Citrus Sinensis ID: 014940

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-----
MPKTLLYLLLLFSNAAMVLVTPKSTIEPCSNSDSCSALLGYTLYTDLKVSEVGSLFNVDPVSILTANAIDISYSDVENHILPSQLFVRIPVTCACVDGIRKSVSTHYKTRPSDTLTSIANQVYAGLVSADQLREANDIQDPDVLDVGVNLLVPLPCTCFNGTDNSLPAVYLSYVVKDVDTLAGIAARYRTTLTDLMNANAMGSTAVKAGDILAVPLPACATNFPRYALDHGLIVPNGSYAITASHCVQCSCGPGNLNLYCMPASLAVSCSSMQCKNSNLMLGNVTTQRSSAGCNVTSCSYGGFVNGTIVTMLSTSLQPRCPGPQQFPPLIAPPSSVTRDSTFAPSPAPQSDGAGPAGATTPKSSVVPSSGSIPGLPPASGPSGSVSSACSLTNSLSTFPPAFMLYLFVKFIVSIS
ccHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEcccccHHHHHHHHcccHHHHHHHcccccccccccccEEccccEEEEccccccccccEEEccEEEEEcccccHHHHHHHHccccccHHHHHHHcccccccccccccEEEEccccccccccccccccEEEEEEEEccccHHHHHHHHcccHHHHHHHccccccccccccEEEEccccccccccccccccccEEccccEEEcccccEEEEEccccccccEEcccccccccccccccccEEEccEEEccccccccccEEEEccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccc
ccHHHEEEEHHHHHHcccccccccccccccccccccEEEEEEccccccHHHHHHHHcccHHHHHHHcccccccccccccccccccEEEEEEEccccccccccccEEEEEcccccHHHHHHHHHcccccHHHHHHHcccccccccccccEEEEEEcccccccccccccEEEEEEEEcccccHHHHHHHHcccHHHHHHHccccccccccccEEEEEcccccccccccccccccEcccccEEEEcccEEEEEccccccEEEEccccccccccccccccccEEEccEEEEccccccccEEEEcccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccc
MPKTLLYLLLLFSNAamvlvtpkstiepcsnsdscsallgytlytdlkvsevgslfnvdpvsiLTANaidisysdvenhilpsqlfvripvtcacVDGIRKSvsthyktrpsdtlTSIANQVYAGLVSAdqlreandiqdpdvldvgvnllvplpctcfngtdnslpAVYLSYVVKDVDTLAGIAARYRTTLTDLMnanamgstavkagdilavplpacatnfpryaldhglivpngsyaitashcvqcscgpgnlnlycmpaslavscssmqcknsnlmlgnvttqrssagcnvtscsyggfVNGTIVTMLStslqprcpgpqqfppliappssvtrdstfapspapqsdgagpagattpkssvvpssgsipglppasgpsgsvssacsltnslstfppAFMLYLFVKFIVSIS
MPKTLLYLLLLFSNAAMVLVTPkstiepcsnsdSCSALLGYTLYTDLKVSEVGSLFNVDPVSILTANAIDISYSDVENHILPSQLFVRIPVTCACVDGIRKSvsthyktrpsdtltSIANQVYAGLVSADQLREANDIQDPDVLDVGVNLLVPLPCTCFNGTDNSLPAVYLSYVVKDVDTLAGIAARYRTTLTDLMNANAMGSTAVKAGDILAVPLPACATNFPRYALDHGLIVPNGSYAITASHCVQCSCGPGNLNLYCMPASLAVSCSSMQCKNSNLMLGNVTTQRSSAGCNVTSCSYGGFVNGTIVTMLSTSLQPRCPGPQQFPPLIAPPSSVTRDSTFAPSPAPQSDGAGPAGATTPKSSVVPSSGSIPGLPPASGPSGSVSSACSLTNSLSTFPPAFMLYLFVKFIVSIS
MPKTllyllllFSNAAMVLVTPKSTIEPCSNSDSCSALLGYTLYTDLKVSEVGSLFNVDPVSILTANAIDISYSDVENHILPSQLFVRIPVTCACVDGIRKSVSTHYKTRPSDTLTSIANQVYAGLVSADQLREANDIQDPDVLDVGVNLLVPLPCTCFNGTDNSLPAVYLSYVVKDVDTLAGIAARYRTTLTDLMNANAMGSTAVKAGDILAVPLPACATNFPRYALDHGLIVPNGSYAITASHCVQCSCGPGNLNLYCMPASLAVSCSSMQCKNSNLMLGNVTTQRSSAGCNVTSCSYGGFVNGTIVTMLSTSLQPRCPGPQQFPPLIAPPSSVTRDSTFAPSPAPQSDGAGPAGATTpkssvvpssgsipglppasgpsgsvssACSLTNSLSTFPPAFMLYLFVKFIVSIS
***TLLYLLLLFSNAAMVLVTPKSTIEPCSNSDSCSALLGYTLYTDLKVSEVGSLFNVDPVSILTANAIDISYSDVENHILPSQLFVRIPVTCACVDGIRKSVSTHYKTRPSDTLTSIANQVYAGLVSADQLREANDIQDPDVLDVGVNLLVPLPCTCFNGTDNSLPAVYLSYVVKDVDTLAGIAARYRTTLTDLMNANAMGSTAVKAGDILAVPLPACATNFPRYALDHGLIVPNGSYAITASHCVQCSCGPGNLNLYCMPASLAVSCSSMQCKNSNLMLGNVTTQRSSAGCNVTSCSYGGFVNGTIVTMLST******************************************************************************NSLSTFPPAFMLYLFVKFIVS**
*PKTLLYLLLLFSNAAMVLVTP************CSALLGYTLYTDLKVSEVGSLFNVDPVSILTANAIDISYSDVENHILPSQLFVRIPVTCA**********THYKTRPSDTLTSIANQVYAGLVSADQLREANDIQDPDVLDVGVNLLVPLP***************LSYVVKDVDTLAGIAARYRTTLTDLMNANAMGSTAVKAGDILAVPLPACA********DHGLIVPNGSYAITASHCVQCSCGPGNLNLY*****************SNLML****************CSYGGFVNGTIVTML**********************************************************************************LSTFPPAFMLYLFVKFIVSIS
MPKTLLYLLLLFSNAAMVLVTPKSTIEPCSNSDSCSALLGYTLYTDLKVSEVGSLFNVDPVSILTANAIDISYSDVENHILPSQLFVRIPVTCACVDGIRKSVSTHYKTRPSDTLTSIANQVYAGLVSADQLREANDIQDPDVLDVGVNLLVPLPCTCFNGTDNSLPAVYLSYVVKDVDTLAGIAARYRTTLTDLMNANAMGSTAVKAGDILAVPLPACATNFPRYALDHGLIVPNGSYAITASHCVQCSCGPGNLNLYCMPASLAVSCSSMQCKNSNLMLGNVTTQRSSAGCNVTSCSYGGFVNGTIVTMLSTSLQPRCPGPQQFPPLIAPPS******************************************************CSLTNSLSTFPPAFMLYLFVKFIVSIS
MPKTLLYLLLLFSNAAMVLVTPKSTIEPCSNSDSCSALLGYTLYTDLKVSEVGSLFNVDPVSILTANAIDISYSDVENHILPSQLFVRIPVTCACVDGIRKSVSTHYKTRPSDTLTSIANQVYAGLVSADQLREANDIQDPDVLDVGVNLLVPLPCTCFNGTDNSLPAVYLSYVVKDVDTLAGIAARYRTTLTDLMNANAMGSTAVKAGDILAVPLPACATNFPRYALDHGLIVPNGSYAITASHCVQCSCGPGNLNLYCMPASLAVSCSSMQCKNSNLMLGNVTTQRSSAGCNVTSCSYGGFVNGTIVTMLSTSLQPRCPGPQQFPPLIAPPSSVTRDSTF***********************************************SLTNSLSTFPPAFMLYLFVKFIVSIS
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oooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooo
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MPKTLLYLLLLFSNAAMVLVTPKSTIEPCSNSDSCSALLGYTLYTDLKVSEVGSLFNVDPVSILTANAIDISYSDVENHILPSQLFVRIPVTCACVDGIRKSVSTHYKTRPSDTLTSIANQVYAGLVSADQLREANDIQDPDVLDVGVNLLVPLPCTCFNGTDNSLPAVYLSYVVKDVDTLAGIAARYRTTLTDLMNANAMGSTAVKAGDILAVPLPACATNFPRYALDHGLIVPNGSYAITASHCVQCSCGPGNLNLYCMPASLAVSCSSMQCKNSNLMLGNVTTQRSSAGCNVTSCSYGGFVNGTIVTMLSTSLQPRCPGPQQFPPLIAPPSSVTRDSTFAPSPAPQSDGAGPAGATTPKSSVVPSSGSIPGLPPASGPSGSVSSACSLTNSLSTFPPAFMLYLFVKFIVSIS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query415 2.2.26 [Sep-21-2011]
Q93ZH0416 LysM domain-containing GP yes no 0.968 0.966 0.664 1e-159
Q6NPN4423 LysM domain-containing GP no no 0.930 0.912 0.613 1e-137
O23006350 LysM domain-containing GP no no 0.674 0.8 0.329 4e-30
Q8H8C7356 Chitin elicitor-binding p no no 0.561 0.654 0.324 2e-26
O64825 612 LysM domain receptor-like no no 0.397 0.269 0.293 3e-07
Q1DUF9 1662 Putative DNA helicase INO N/A no 0.144 0.036 0.391 0.0005
>sp|Q93ZH0|LYM1_ARATH LysM domain-containing GPI-anchored protein 1 OS=Arabidopsis thaliana GN=LYM1 PE=1 SV=1 Back     alignment and function desciption
 Score =  563 bits (1450), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 275/414 (66%), Positives = 338/414 (81%), Gaps = 12/414 (2%)

Query: 2   PKTLLYLLLLFSNAAMVLVTPKSTIEPCSNSDSCSALLGYTLYTDLKVSEVGSLFNVDPV 61
           P  L+++ L+ +++     T KSTIEPCS++D+C+ALLGYTLYTDLKVSEV SLF VDP+
Sbjct: 7   PIFLIFVSLILASSLTFTATAKSTIEPCSSNDTCNALLGYTLYTDLKVSEVASLFQVDPI 66

Query: 62  SILTANAIDISYSDVENHILPSQLFVRIPVTCACVDGIRKSVSTHYKTRPSDTLTSIANQ 121
           SIL ANAIDISY DVENHILPS+LF++IP+TC+CVDGIRKSVSTHYKTRPSD L SIA+ 
Sbjct: 67  SILLANAIDISYPDVENHILPSKLFLKIPITCSCVDGIRKSVSTHYKTRPSDNLGSIADS 126

Query: 122 VYAGLVSADQLREANDIQDPDVLDVGVNLLVPLPCTCFNGTDNSLPAVYLSYVVKDVDTL 181
           VY GLVSA+Q++EAN + DP +LDVG +L++PLPC CFNGTDNSLPAVYLSYVVK++DTL
Sbjct: 127 VYGGLVSAEQIQEANSVNDPSLLDVGTSLVIPLPCACFNGTDNSLPAVYLSYVVKEIDTL 186

Query: 182 AGIAARYRTTLTDLMNANAMGSTAVKAGDILAVPLPACATNFPRYALDHGLIVPNGSYAI 241
            GIA RY TT+TDLMN NAMG+  V +GDILAVPL ACA+ FPRYA D GLIVPNGSYA+
Sbjct: 187 VGIARRYSTTITDLMNVNAMGAPDVSSGDILAVPLSACASKFPRYASDFGLIVPNGSYAL 246

Query: 242 TASHCVQCSCGPGNLNLYCMPASLAVSCSSMQCKNSNLMLGNVTTQRSSAGCNVTSCSYG 301
            A HCVQCSC  G+ NLYC PASLAVSCSSMQC+NSNLMLGN+T Q++SAGCNVT+C Y 
Sbjct: 247 AAGHCVQCSCALGSRNLYCEPASLAVSCSSMQCRNSNLMLGNITVQQTSAGCNVTTCDYN 306

Query: 302 GFVNGTIVTMLSTSLQPRCPGPQQFPPLIAPPSSVTRDSTFAPSPAPQSDGAGPAGATTP 361
           G  NGTI+TML+ SLQPRCPGPQQF PL+APP +V RD  +AP+P+P  DG G + A++P
Sbjct: 307 GIANGTILTMLTRSLQPRCPGPQQFAPLLAPPDTVPRDVMYAPAPSPDFDGPG-SIASSP 365

Query: 362 KSSVVPSSGSIPGLPPASGPSGSVSSACSLTNSLSTFPPAFMLYLFVKFIVSIS 415
           +SS++P  G +PG  PA+GP+GS+S+A + + S          Y F+ F++SI+
Sbjct: 366 RSSMLPGGGILPG-NPANGPAGSISTASASSVS----------YFFITFLISIA 408

Arabidopsis thaliana (taxid: 3702)
>sp|Q6NPN4|LYM3_ARATH LysM domain-containing GPI-anchored protein 2 OS=Arabidopsis thaliana GN=LYM3 PE=1 SV=1 Back     alignment and function description
>sp|O23006|LYM2_ARATH LysM domain-containing GPI-anchored protein 2 OS=Arabidopsis thaliana GN=LYM2 PE=1 SV=1 Back     alignment and function description
>sp|Q8H8C7|CEBIP_ORYSJ Chitin elicitor-binding protein OS=Oryza sativa subsp. japonica GN=CEBIP PE=1 SV=1 Back     alignment and function description
>sp|O64825|LYK4_ARATH LysM domain receptor-like kinase 4 OS=Arabidopsis thaliana GN=LYK4 PE=1 SV=1 Back     alignment and function description
>sp|Q1DUF9|INO80_COCIM Putative DNA helicase INO80 OS=Coccidioides immitis (strain RS) GN=INO80 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query415
224063104412 predicted protein [Populus trichocarpa] 0.956 0.963 0.775 1e-178
449458099432 PREDICTED: lysM domain-containing GPI-an 0.983 0.944 0.742 1e-177
225459538418 PREDICTED: lysM domain-containing GPI-an 0.975 0.968 0.755 1e-175
255545472410 LysM domain GPI-anchored protein 1 precu 0.973 0.985 0.728 1e-172
188509929453 peptidoglycan-binding LysM domain-contai 0.956 0.876 0.759 1e-172
302141828408 unnamed protein product [Vitis vinifera] 0.927 0.943 0.773 1e-171
356509418417 PREDICTED: lysM domain-containing GPI-an 0.971 0.966 0.709 1e-165
356515884418 PREDICTED: lysM domain-containing GPI-an 0.983 0.976 0.688 1e-162
339777223326 peptidoglycan-binding LysM domain-contai 0.771 0.981 0.867 1e-161
18395044416 LysM domain-containing GPI-anchored prot 0.968 0.966 0.664 1e-158
>gi|224063104|ref|XP_002300994.1| predicted protein [Populus trichocarpa] gi|222842720|gb|EEE80267.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  630 bits (1625), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 310/400 (77%), Positives = 354/400 (88%), Gaps = 3/400 (0%)

Query: 8   LLLLFSNAAMVLVTPKSTIEPCSNSDSCSALLGYTLYTDLKVSEVGSLFNVDPVSILTAN 67
            +L+F NA + LVT KSTIEPC+NSDSC+ALL YTLYTDLKVSEV SLF +DP+++LT N
Sbjct: 9   FILIFINA-VALVTSKSTIEPCTNSDSCNALLAYTLYTDLKVSEVASLFQIDPIALLTTN 67

Query: 68  AIDISYSDVENHILPSQLFVRIPVTCACVDGIRKSVSTHYKTRPSDTLTSIANQVYAGLV 127
           AIDISY DVENHILPSQLF++IP+TC+CVDGIRKSVSTHYKTRPSDTL+SIA+ +YAGLV
Sbjct: 68  AIDISYPDVENHILPSQLFLKIPITCSCVDGIRKSVSTHYKTRPSDTLSSIADSIYAGLV 127

Query: 128 SADQLREANDIQDPDVLDVGVNLLVPLPCTCFNGTDNSLPAVYLSYVVKDVDTLAGIAAR 187
           SADQ++EAN I DP VLDVG +L+VPLPCTCFNGTDNSLPA+YLSYVVK+VDTLA IAAR
Sbjct: 128 SADQIKEANSIDDPSVLDVGQSLVVPLPCTCFNGTDNSLPAIYLSYVVKEVDTLAAIAAR 187

Query: 188 YRTTLTDLMNANAMGSTAVKAGDILAVPLPACATNFPRYALDHGLIVPNGSYAITASHCV 247
           Y TTLTDLMN NAMGS A+KAGDILAVPLPACA+ FPRYA D GLIVPNGSYAI+ASHCV
Sbjct: 188 YETTLTDLMNVNAMGSAAIKAGDILAVPLPACASKFPRYASDFGLIVPNGSYAISASHCV 247

Query: 248 QCSCGPGNLNLYCMPASLAVSCSSMQCKNSNLMLGNVTTQRSSAGCNVTSCSYGGFVNGT 307
           QCSCGPGNLNLYCMPASLAVSCSSMQC+NSNLMLGNVT Q+SSAGCNVTSC+YGG+VNGT
Sbjct: 248 QCSCGPGNLNLYCMPASLAVSCSSMQCRNSNLMLGNVTVQQSSAGCNVTSCNYGGYVNGT 307

Query: 308 IVTMLSTSLQPRCPGPQQFPPLIAPPSSVTRDSTFAPSPAPQSDGAGPAGATTPKSSVVP 367
           I+T LST LQPRCPG QQFPPL+ PP++V RDSTFAP+PAPQSDG+      TPK+ VVP
Sbjct: 308 IMTTLSTYLQPRCPGSQQFPPLVVPPTTVIRDSTFAPAPAPQSDGSS-TPTPTPKTEVVP 366

Query: 368 SSGSIPGLPPASGPSGSVSSACSLTNSLSTFPPAFMLYLF 407
           ++GS+PGLPPASGP GS+S + S+ N  +T   A +L LF
Sbjct: 367 ATGSLPGLPPASGPVGSISLSFSV-NPSATLMIAAVLLLF 405

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449458099|ref|XP_004146785.1| PREDICTED: lysM domain-containing GPI-anchored protein 1-like [Cucumis sativus] gi|449528597|ref|XP_004171290.1| PREDICTED: lysM domain-containing GPI-anchored protein 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225459538|ref|XP_002285848.1| PREDICTED: lysM domain-containing GPI-anchored protein 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255545472|ref|XP_002513796.1| LysM domain GPI-anchored protein 1 precursor, putative [Ricinus communis] gi|223546882|gb|EEF48379.1| LysM domain GPI-anchored protein 1 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|188509929|gb|ACD56618.1| peptidoglycan-binding LysM domain-containing related protein [Gossypioides kirkii] Back     alignment and taxonomy information
>gi|302141828|emb|CBI19031.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356509418|ref|XP_003523446.1| PREDICTED: lysM domain-containing GPI-anchored protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356515884|ref|XP_003526627.1| PREDICTED: lysM domain-containing GPI-anchored protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|339777223|gb|AEK05508.1| peptidoglycan-binding LysM domain-containing protein [Dimocarpus longan] Back     alignment and taxonomy information
>gi|18395044|ref|NP_564153.1| LysM domain-containing GPI-anchored protein 1 [Arabidopsis thaliana] gi|38258218|sp|Q93ZH0.1|LYM1_ARATH RecName: Full=LysM domain-containing GPI-anchored protein 1; Flags: Precursor gi|15982870|gb|AAL09782.1| At1g21880/T26F17_5 [Arabidopsis thaliana] gi|53749174|gb|AAU90072.1| At1g21880 [Arabidopsis thaliana] gi|332192047|gb|AEE30168.1| LysM domain-containing GPI-anchored protein 1 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query415
TAIR|locus:2201143416 LYP2 "LysM-containing receptor 0.804 0.802 0.748 7e-143
TAIR|locus:2204720423 LYM3 "lysin-motif (LysM) domai 0.795 0.780 0.669 1.8e-126
TAIR|locus:2827686350 LYP1 "LysM-containing receptor 0.681 0.808 0.329 2.2e-34
UNIPROTKB|Q8H8C7356 CEBIP "Chitin elicitor-binding 0.701 0.817 0.298 9.8e-32
TAIR|locus:2049029 612 LYK4 "LysM-containing receptor 0.4 0.271 0.305 1.6e-09
TAIR|locus:2050987 664 LYK5 "LysM-containing receptor 0.438 0.274 0.251 8.5e-07
TAIR|locus:2082359 654 LYK2 "LysM-containing receptor 0.440 0.279 0.229 7.7e-05
TAIR|locus:2201143 LYP2 "LysM-containing receptor protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1374 (488.7 bits), Expect = 7.0e-143, Sum P(2) = 7.0e-143
 Identities = 250/334 (74%), Positives = 289/334 (86%)

Query:    21 TPKSTIEPCSNSDSCSALLGYTLYTDLKVSEVGSLFNVDPVSILTANAIDISYSDVENHI 80
             T KSTIEPCS++D+C+ALLGYTLYTDLKVSEV SLF VDP+SIL ANAIDISY DVENHI
Sbjct:    26 TAKSTIEPCSSNDTCNALLGYTLYTDLKVSEVASLFQVDPISILLANAIDISYPDVENHI 85

Query:    81 LPSQLFVRIPVTCACVDGIRKSVSTHYKTRPSDTLTSIANQVYAGLVSADQLREANDIQD 140
             LPS+LF++IP+TC+CVDGIRKSVSTHYKTRPSD L SIA+ VY GLVSA+Q++EAN + D
Sbjct:    86 LPSKLFLKIPITCSCVDGIRKSVSTHYKTRPSDNLGSIADSVYGGLVSAEQIQEANSVND 145

Query:   141 PDVLDVGVNLLVPLPCTCFNGTDNSLPAVYLSYVVKDVDTLAGIAARYRTTLTDLMNANA 200
             P +LDVG +L++PLPC CFNGTDNSLPAVYLSYVVK++DTL GIA RY TT+TDLMN NA
Sbjct:   146 PSLLDVGTSLVIPLPCACFNGTDNSLPAVYLSYVVKEIDTLVGIARRYSTTITDLMNVNA 205

Query:   201 MGSTAVKAGDILAVPLPACATNFPRYALDHGLIVPNGSYAITASHCVQCSCGPGNLNLYC 260
             MG+  V +GDILAVPL ACA+ FPRYA D GLIVPNGSYA+ A HCVQCSC  G+ NLYC
Sbjct:   206 MGAPDVSSGDILAVPLSACASKFPRYASDFGLIVPNGSYALAAGHCVQCSCALGSRNLYC 265

Query:   261 MPASLAVSCSSMQCKNSNLMLGNVTTQRSSAGCNVTSCSYGGFVNGTIVTMLSTSLQPRC 320
              PASLAVSCSSMQC+NSNLMLGN+T Q++SAGCNVT+C Y G  NGTI+TML+ SLQPRC
Sbjct:   266 EPASLAVSCSSMQCRNSNLMLGNITVQQTSAGCNVTTCDYNGIANGTILTMLTRSLQPRC 325

Query:   321 PGPQQFPPLIAPPSSVTRDSTFAPSPAPQSDGAG 354
             PGPQQF PL+APP +V RD  +AP+P+P  DG G
Sbjct:   326 PGPQQFAPLLAPPDTVPRDVMYAPAPSPDFDGPG 359
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0016998 "cell wall macromolecule catabolic process" evidence=IEA;ISS
GO:0031225 "anchored to membrane" evidence=TAS
GO:0046658 "anchored to plasma membrane" evidence=IDA
GO:0006955 "immune response" evidence=IMP
GO:0042834 "peptidoglycan binding" evidence=IDA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0016570 "histone modification" evidence=RCA
GO:0048449 "floral organ formation" evidence=RCA
TAIR|locus:2204720 LYM3 "lysin-motif (LysM) domain protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2827686 LYP1 "LysM-containing receptor protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q8H8C7 CEBIP "Chitin elicitor-binding protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2049029 LYK4 "LysM-containing receptor-like kinase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050987 LYK5 "LysM-containing receptor-like kinase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082359 LYK2 "LysM-containing receptor-like kinase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q93ZH0LYM1_ARATHNo assigned EC number0.66420.96860.9663yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
grail3.0003072201
hypothetical protein (412 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query415
pfam0147643 pfam01476, LysM, LysM domain 2e-08
PRK10783456 PRK10783, mltD, membrane-bound lytic murein transg 9e-07
cd0011845 cd00118, LysM, Lysine Motif is a small domain invo 2e-06
cd0011845 cd00118, LysM, Lysine Motif is a small domain invo 3e-05
smart0025744 smart00257, LysM, Lysin motif 3e-05
smart0025744 smart00257, LysM, Lysin motif 5e-05
pfam0147643 pfam01476, LysM, LysM domain 2e-04
PRK10783456 PRK10783, mltD, membrane-bound lytic murein transg 0.002
COG3858423 COG3858, COG3858, Predicted glycosyl hydrolase [Ge 0.002
>gnl|CDD|144899 pfam01476, LysM, LysM domain Back     alignment and domain information 
 Score = 49.7 bits (120), Expect = 2e-08
 Identities = 17/43 (39%), Positives = 23/43 (53%)

Query: 173 YVVKDVDTLAGIAARYRTTLTDLMNANAMGSTAVKAGDILAVP 215
           Y VK  DTL+ IA RY  T+ +L   N + S  +  G  L +P
Sbjct: 1   YTVKKGDTLSSIAKRYGITVEELAELNGLSSPNLYVGQKLKIP 43

The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known. Length = 43
>gnl|CDD|182727 PRK10783, mltD, membrane-bound lytic murein transglycosylase D; Provisional Back     alignment and domain information
>gnl|CDD|212030 cd00118, LysM, Lysine Motif is a small domain involved in binding peptidoglycan Back     alignment and domain information
>gnl|CDD|212030 cd00118, LysM, Lysine Motif is a small domain involved in binding peptidoglycan Back     alignment and domain information
>gnl|CDD|197609 smart00257, LysM, Lysin motif Back     alignment and domain information
>gnl|CDD|197609 smart00257, LysM, Lysin motif Back     alignment and domain information
>gnl|CDD|144899 pfam01476, LysM, LysM domain Back     alignment and domain information
>gnl|CDD|182727 PRK10783, mltD, membrane-bound lytic murein transglycosylase D; Provisional Back     alignment and domain information
>gnl|CDD|226376 COG3858, COG3858, Predicted glycosyl hydrolase [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 415
PRK06347592 autolysin; Reviewed 99.93
PRK06347592 autolysin; Reviewed 99.93
PRK10783456 mltD membrane-bound lytic murein transglycosylase 99.9
PRK10783456 mltD membrane-bound lytic murein transglycosylase 99.6
PRK13914481 invasion associated secreted endopeptidase; Provis 99.6
PF0147644 LysM: LysM domain; InterPro: IPR018392 This domain 99.2
COG1388124 LytE FOG: LysM repeat [Cell envelope biogenesis, o 99.15
PF0147644 LysM: LysM domain; InterPro: IPR018392 This domain 98.99
PRK14125103 cell division suppressor protein YneA; Provisional 98.86
COG1388124 LytE FOG: LysM repeat [Cell envelope biogenesis, o 98.82
cd0011846 LysM Lysin domain, found in a variety of enzymes i 98.71
TIGR0289944 spore_safA spore coat assembly protein SafA. in wh 98.66
PRK14125103 cell division suppressor protein YneA; Provisional 98.55
cd0011846 LysM Lysin domain, found in a variety of enzymes i 98.55
TIGR02907338 spore_VI_D stage VI sporulation protein D. SpoVID, 98.54
COG3858 423 Predicted glycosyl hydrolase [General function pre 98.54
TIGR0289944 spore_safA spore coat assembly protein SafA. in wh 98.52
PRK10871319 nlpD lipoprotein NlpD; Provisional 98.48
PRK13914 481 invasion associated secreted endopeptidase; Provis 98.42
PRK10871319 nlpD lipoprotein NlpD; Provisional 98.37
smart0025744 LysM Lysin motif. 98.36
TIGR02907338 spore_VI_D stage VI sporulation protein D. SpoVID, 98.27
smart0025744 LysM Lysin motif. 98.17
PRK11198147 LysM domain/BON superfamily protein; Provisional 98.12
COG3858423 Predicted glycosyl hydrolase [General function pre 98.09
PRK11198147 LysM domain/BON superfamily protein; Provisional 97.96
PRK10260306 L,D-transpeptidase; Provisional 97.31
PRK10190310 L,D-transpeptidase; Provisional 97.28
COG1652269 XkdP Uncharacterized protein containing LysM domai 97.2
PRK10190310 L,D-transpeptidase; Provisional 96.42
PF0422585 OapA: Opacity-associated protein A LysM-like domai 96.41
PRK10260306 L,D-transpeptidase; Provisional 96.37
PF0422585 OapA: Opacity-associated protein A LysM-like domai 96.21
TIGR0350574 FimV_core FimV N-terminal domain. This region is f 96.13
PF0548960 Phage_tail_X: Phage Tail Protein X; InterPro: IPR0 96.07
TIGR0350574 FimV_core FimV N-terminal domain. This region is f 95.9
COG1652269 XkdP Uncharacterized protein containing LysM domai 95.85
PRK11649439 putative peptidase; Provisional 94.9
PF0548960 Phage_tail_X: Phage Tail Protein X; InterPro: IPR0 92.91
COG3170 755 FimV Tfp pilus assembly protein FimV [Cell motilit 89.86
COG3170 755 FimV Tfp pilus assembly protein FimV [Cell motilit 89.44
PRK11649439 putative peptidase; Provisional 89.31
COG3061242 OapA Cell envelope opacity-associated protein A [C 86.1
COG3061242 OapA Cell envelope opacity-associated protein A [C 86.09
>PRK06347 autolysin; Reviewed Back     alignment and domain information 
Probab=99.93  E-value=1.4e-25  Score=239.21  Aligned_cols=205  Identities=17%  Similarity=0.180  Sum_probs=154.4

Q ss_pred             ccEEEEeCCCCCHHHHHHHcCCCHHHHHHhCCCCCCCCCCCCCccCCCceEEeeccccccC------------Cc----c
Q 014940           37 ALLGYTLYTDLKVSEVGSLFNVDPVSILTANAIDISYSDVENHILPSQLFVRIPVTCACVD------------GI----R  100 (415)
Q Consensus        37 a~~~Ytv~~gdtL~~IA~~fgvs~~~L~~~N~l~~t~P~~~~~~L~~Gq~l~IP~~csc~~------------g~----~  100 (415)
                      .+..|+|++||+|+.||++||++.++|+++|++       ..+.|.+||.|+||..-.-..            ..    .
T Consensus       329 ~~~~Y~V~sGDTL~~IA~rygvSv~eL~~~N~l-------~~d~L~~Gq~L~VP~~~~~~~~~t~~~~~~~~~~~~~~~~  401 (592)
T PRK06347        329 NAKIYTVVKGDSLWRIANNHKVTVANLKAWNNL-------KSDFIYPGQKLKVSAGSTTSDTNTSKPSTGTSTSKPSTGT  401 (592)
T ss_pred             CceEEEeCCCCCHHHHHHHhCCCHHHHHHHhCC-------CccccccCcEEEEecccccccccccccccccccccccccc
Confidence            577899999999999999999999999999997       235789999999996311000            00    0


Q ss_pred             cccceeEEeCCCCCHHHHHHHHhCCCCCHHHHHhhcCCCCCCCccCCcEEEecCCCcCCCCC------------cCCCCc
Q 014940          101 KSVSTHYKTRPSDTLTSIANQVYAGLVSADQLREANDIQDPDVLDVGVNLLVPLPCTCFNGT------------DNSLPA  168 (415)
Q Consensus       101 ~~~~~~YtV~~GDTL~~IA~~~fggLvs~~~L~~~N~l~~~~~L~~Gq~L~IP~~c~c~~~~------------~~~~~~  168 (415)
                      ...+..|+|++||||+.||++ |+  +++.+|++||++. .+.|.+||.|.||....-....            ......
T Consensus       402 ~~~~~~ytVk~GDTL~sIA~k-yg--VSv~~L~~~N~l~-s~~L~~Gq~L~IP~~~~~~~~t~~~s~~~~~~k~~s~~~~  477 (592)
T PRK06347        402 STNAKVYTVVKGDSLWRIANN-NK--VTIANLKSWNNLK-SDFIYPGQKLKVSAGSTSNTNTSKPSTNTNTSKPSTNTNT  477 (592)
T ss_pred             ccCceeEEecCCCCHHHHHHH-hC--CCHHHHHHHhCCC-cceeccCcEEEEecCCcccccccccccccccccccccccc
Confidence            124568999999999999999 99  9999999999975 4679999999999753210000            000112


Q ss_pred             eeeeEEecCCCCHHHHHHHhCCCHHHHHHhcCCCCCCcCCCCEEEECCCCCCCCCC--CccCCCceeeccceeEEecCce
Q 014940          169 VYLSYVVKDVDTLAGIAARYRTTLTDLMNANAMGSTAVKAGDILAVPLPACATNFP--RYALDHGLIVPNGSYAITASHC  246 (415)
Q Consensus       169 ~~~tY~Vq~GDTL~sIA~rfgvt~~~L~~~N~l~~~~I~pGq~L~IPl~~~~ss~~--~~s~~~~l~v~~gsY~~~AG~~  246 (415)
                      ....|+|++|||||+||++||+++++|++||++..+.|++||.|.||.....+...  ..+...........|.|..||.
T Consensus       478 ~~~~YtVk~GDTL~sIAkkygVSv~~L~~~N~l~s~~L~~GQ~L~Ip~~~~~s~~~t~~~s~~~~~~~~~~~Y~Vk~GDT  557 (592)
T PRK06347        478 NAKVYTVAKGDSLWRIANNNKVTIANLKSWNNLKSDFIYPGQKLKVSAGSTTNNTNTAKPSTNKPSNSTVKTYTVKKGDS  557 (592)
T ss_pred             cceeeeecCCCCHHHHHHHHCCCHHHHHHhcCCCcccccCCcEEEEecCcccccccccCCccCCccCccceeeecCCCCc
Confidence            34689999999999999999999999999999987899999999999865332111  0000111111234699999999


Q ss_pred             eEEeec
Q 014940          247 VQCSCG  252 (415)
Q Consensus       247 v~~~~~  252 (415)
                      +.-|+.
T Consensus       558 L~sIA~  563 (592)
T PRK06347        558 LWAISR  563 (592)
T ss_pred             HHHHHH
Confidence            998883

>PRK06347 autolysin; Reviewed Back     alignment and domain information
>PRK10783 mltD membrane-bound lytic murein transglycosylase D; Provisional Back     alignment and domain information
>PRK10783 mltD membrane-bound lytic murein transglycosylase D; Provisional Back     alignment and domain information
>PRK13914 invasion associated secreted endopeptidase; Provisional Back     alignment and domain information
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation [] Back     alignment and domain information
>COG1388 LytE FOG: LysM repeat [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation [] Back     alignment and domain information
>PRK14125 cell division suppressor protein YneA; Provisional Back     alignment and domain information
>COG1388 LytE FOG: LysM repeat [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd00118 LysM Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation Back     alignment and domain information
>TIGR02899 spore_safA spore coat assembly protein SafA Back     alignment and domain information
>PRK14125 cell division suppressor protein YneA; Provisional Back     alignment and domain information
>cd00118 LysM Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation Back     alignment and domain information
>TIGR02907 spore_VI_D stage VI sporulation protein D Back     alignment and domain information
>COG3858 Predicted glycosyl hydrolase [General function prediction only] Back     alignment and domain information
>TIGR02899 spore_safA spore coat assembly protein SafA Back     alignment and domain information
>PRK10871 nlpD lipoprotein NlpD; Provisional Back     alignment and domain information
>PRK13914 invasion associated secreted endopeptidase; Provisional Back     alignment and domain information
>PRK10871 nlpD lipoprotein NlpD; Provisional Back     alignment and domain information
>smart00257 LysM Lysin motif Back     alignment and domain information
>TIGR02907 spore_VI_D stage VI sporulation protein D Back     alignment and domain information
>smart00257 LysM Lysin motif Back     alignment and domain information
>PRK11198 LysM domain/BON superfamily protein; Provisional Back     alignment and domain information
>COG3858 Predicted glycosyl hydrolase [General function prediction only] Back     alignment and domain information
>PRK11198 LysM domain/BON superfamily protein; Provisional Back     alignment and domain information
>PRK10260 L,D-transpeptidase; Provisional Back     alignment and domain information
>PRK10190 L,D-transpeptidase; Provisional Back     alignment and domain information
>COG1652 XkdP Uncharacterized protein containing LysM domain [Function unknown] Back     alignment and domain information
>PRK10190 L,D-transpeptidase; Provisional Back     alignment and domain information
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein Back     alignment and domain information
>PRK10260 L,D-transpeptidase; Provisional Back     alignment and domain information
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein Back     alignment and domain information
>TIGR03505 FimV_core FimV N-terminal domain Back     alignment and domain information
>PF05489 Phage_tail_X: Phage Tail Protein X; InterPro: IPR008861 This entry is represented by Bacteriophage P2, GpX Back     alignment and domain information
>TIGR03505 FimV_core FimV N-terminal domain Back     alignment and domain information
>COG1652 XkdP Uncharacterized protein containing LysM domain [Function unknown] Back     alignment and domain information
>PRK11649 putative peptidase; Provisional Back     alignment and domain information
>PF05489 Phage_tail_X: Phage Tail Protein X; InterPro: IPR008861 This entry is represented by Bacteriophage P2, GpX Back     alignment and domain information
>COG3170 FimV Tfp pilus assembly protein FimV [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>COG3170 FimV Tfp pilus assembly protein FimV [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PRK11649 putative peptidase; Provisional Back     alignment and domain information
>COG3061 OapA Cell envelope opacity-associated protein A [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>COG3061 OapA Cell envelope opacity-associated protein A [Cell envelope biogenesis, outer membrane] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query415
4eby_A212 Chitin elicitor receptor kinase 1; pathogen-associ 5e-36
2l9y_A167 CVNH-LYSM lectin; carbohydrate, sugar binding prot 2e-11
2l9y_A167 CVNH-LYSM lectin; carbohydrate, sugar binding prot 2e-04
2djp_A77 Hypothetical protein SB145; LYSM, structural genom 1e-07
2djp_A77 Hypothetical protein SB145; LYSM, structural genom 1e-05
1e0g_A48 Membrane-bound lytic murein transglycosylase D; ce 9e-07
1y7m_A164 Hypothetical protein BSU14040; surface mutagenesis 8e-05
>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A* Length = 212 Back     alignment and structure
 Score =  130 bits (328), Expect = 5e-36
 Identities = 42/197 (21%), Positives = 70/197 (35%), Gaps = 6/197 (3%)

Query: 32  SDSC-SALLGYTLYTDLKVSEVGSLFNVDPVSILTANAIDISYSD---VENHILPSQLFV 87
             SC  AL  Y L     +S +    N         N   I   +    +   +     V
Sbjct: 2   RTSCPLALASYYLENGTTLSVINQNLNSSIAPYDQINFDPILRYNSNIKDKDRIQMGSRV 61

Query: 88  RIPVTCACVDGIRKSVSTHYKTRPSDTLTSIANQVYAGLVSADQLREANDIQDPDVLDVG 147
            +P  C C  G     +  Y  R  DT   +A   YA L + + L+  N       + + 
Sbjct: 62  LVPFPCECQPGDFLGHNFSYSVRQEDTYERVAISNYANLTTMESLQARNPF-PATNIPLS 120

Query: 148 VNLLVPLPCTCFNGTDNSLPAVYLSYVVKDVDTLAGIAARYRTTLTDLMNANAMGSTAVK 207
             L V + C+C + + +    ++++Y ++  D+L+ IA     +   L   N  G     
Sbjct: 121 ATLNVLVNCSCGDESVSKDFGLFVTYPLRPEDSLSSIARSSGVSADILQRYNP-GVNFNS 179

Query: 208 AGDILAVPLPACATNFP 224
              I+ VP       FP
Sbjct: 180 GNGIVYVPGRDPNGAFP 196
>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15} Length = 167 Back     alignment and structure
>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15} Length = 167 Back     alignment and structure
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 77 Back     alignment and structure
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 77 Back     alignment and structure
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1 Length = 48 Back     alignment and structure
>1y7m_A Hypothetical protein BSU14040; surface mutagenesis, cysteine proteases, cell WALL catabolism, structural genomics, PSI; 2.05A {Bacillus subtilis subsp} SCOP: b.160.1.1 d.7.1.1 Length = 164 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query415
4eby_A212 Chitin elicitor receptor kinase 1; pathogen-associ 100.0
4eby_A212 Chitin elicitor receptor kinase 1; pathogen-associ 99.87
2l9y_A167 CVNH-LYSM lectin; carbohydrate, sugar binding prot 99.49
2gu1_A361 Zinc peptidase; alpha/beta, beta barrel, structura 99.36
2djp_A77 Hypothetical protein SB145; LYSM, structural genom 99.28
1e0g_A48 Membrane-bound lytic murein transglycosylase D; ce 99.17
2djp_A77 Hypothetical protein SB145; LYSM, structural genom 99.1
2gu1_A361 Zinc peptidase; alpha/beta, beta barrel, structura 99.08
2l9y_A167 CVNH-LYSM lectin; carbohydrate, sugar binding prot 99.06
1e0g_A48 Membrane-bound lytic murein transglycosylase D; ce 99.0
4a1k_A165 Putative L, D-transpeptidase YKUD; transferase, pe 98.28
4a1k_A165 Putative L, D-transpeptidase YKUD; transferase, pe 98.05
3slu_A371 M23 peptidase domain protein; outer membrane, hydr 97.44
3slu_A371 M23 peptidase domain protein; outer membrane, hydr 96.51
>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A* Back     alignment and structure
Probab=100.00  E-value=8.9e-38  Score=294.39  Aligned_cols=186  Identities=23%  Similarity=0.321  Sum_probs=161.4

Q ss_pred             CCCC-ccEEEEeCCCCCHHHHHHHcCCCH--------HHHHHhCCCCCCCCCCCCCccCCCceEEeeccccccCCccccc
Q 014940           33 DSCS-ALLGYTLYTDLKVSEVGSLFNVDP--------VSILTANAIDISYSDVENHILPSQLFVRIPVTCACVDGIRKSV  103 (415)
Q Consensus        33 ~~C~-a~~~Ytv~~gdtL~~IA~~fgvs~--------~~L~~~N~l~~t~P~~~~~~L~~Gq~l~IP~~csc~~g~~~~~  103 (415)
                      .+|+ +|+.|+|++||||+.||++|+++.        ++|+++|+. +.    ..+.|.+||.|+||.+|.|..+.....
T Consensus         3 ~~C~~a~~~Y~V~~GDTL~~IA~~~~vsv~~~~~~~~~~I~~~Np~-l~----~~~~l~~Gq~L~IP~~~~~~~~~~~~~   77 (212)
T 4eby_A            3 TSCPLALASYYLENGTTLSVINQNLNSSIAPYDQINFDPILRYNSN-IK----DKDRIQMGSRVLVPFPCECQPGDFLGH   77 (212)
T ss_dssp             CCCSCEEEEEECCTTCCHHHHHHHTCCSSSCCCSSCCHHHHTTCTT-CS----CTTSCCTTCEEEEEECCEEETTTEEEE
T ss_pred             CCCccceEEEEeCCCCCHHHHHHHHCCCchhccccCHHHHHHhccC-CC----CcCccCCCCEEEEeccccccCCccccC
Confidence            6799 999999999999999999999998        999999943 22    235789999999999999976665667


Q ss_pred             ceeEEeCCCCCHHHHH-HHHhCCCCCHHHHHhhcCCCCCCCccCCcEEEecCCCcCCCCCcCCCCceeeeEEecCCCCHH
Q 014940          104 STHYKTRPSDTLTSIA-NQVYAGLVSADQLREANDIQDPDVLDVGVNLLVPLPCTCFNGTDNSLPAVYLSYVVKDVDTLA  182 (415)
Q Consensus       104 ~~~YtV~~GDTL~~IA-~~~fggLvs~~~L~~~N~l~~~~~L~~Gq~L~IP~~c~c~~~~~~~~~~~~~tY~Vq~GDTL~  182 (415)
                      ...|+|++|||||.|| ++ |+|++++++|+++|+ .+++.|++||+|.||..|.|+............+|+|++|||||
T Consensus        78 ~~~Y~V~~GDTL~~IA~~~-y~~lvt~~~L~~~N~-~~~~~l~~Gq~L~IP~~~~~~~~~~~~~~~~~~~Y~V~~GDTL~  155 (212)
T 4eby_A           78 NFSYSVRQEDTYERVAISN-YANLTTMESLQARNP-FPATNIPLSATLNVLVNCSCGDESVSKDFGLFVTYPLRPEDSLS  155 (212)
T ss_dssp             EEEEECCTTCCHHHHHHTT-TTTSSCHHHHHHHCC-SCTTCCCTTCEEEEEEECCCCCTTTCSSCCCEEEEECCTTCCHH
T ss_pred             ceEEEecCCCcHHHHHHHh-cCCCCCHHHHHHhcC-CCcccCCCCCEEEEcCCCcCCCcccccCCCCeEEEEECCCCcHH
Confidence            7899999999999999 57 999999999999999 46788999999999999998765444444556899999999999


Q ss_pred             HHHHHhCCCHHHHHHhcCCCCCCcCCCCEEEECCCCCCCCCCCc
Q 014940          183 GIAARYRTTLTDLMNANAMGSTAVKAGDILAVPLPACATNFPRY  226 (415)
Q Consensus       183 sIA~rfgvt~~~L~~~N~l~~~~I~pGq~L~IPl~~~~ss~~~~  226 (415)
                      +||+|||+++++|++||++.+..+..|+ |+||.+.+.+.+++.
T Consensus       156 ~IA~~fgvsv~~L~~~N~~~~~~~~~g~-l~IP~~~~~~~~~~~  198 (212)
T 4eby_A          156 SIARSSGVSADILQRYNPGVNFNSGNGI-VYVPGRDPNGAFPPF  198 (212)
T ss_dssp             HHHHHHTSCHHHHHHHSTTCCTTSCSSE-EEEECCCTTSCCCCC
T ss_pred             HHHHHHCcCHHHHHHhcCCCccCCCCCE-EEecCCCCCCccCCc
Confidence            9999999999999999998766666665 999999988766544
>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A* Back     alignment and structure
>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15} Back     alignment and structure
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae} Back     alignment and structure
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1 Back     alignment and structure
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae} Back     alignment and structure
>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15} Back     alignment and structure
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1 Back     alignment and structure
>4a1k_A Putative L, D-transpeptidase YKUD; transferase, peptidoglycan synthesis; HET: CME; 1.75A {Bacillus subtilis} PDB: 4a1j_A 4a1i_A* 1y7m_A 3zqd_A 4a52_A* Back     alignment and structure
>4a1k_A Putative L, D-transpeptidase YKUD; transferase, peptidoglycan synthesis; HET: CME; 1.75A {Bacillus subtilis} PDB: 4a1j_A 4a1i_A* 1y7m_A 3zqd_A 4a52_A* Back     alignment and structure
>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A {Neisseria meningitidis} Back     alignment and structure
>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A {Neisseria meningitidis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 415
d1e0ga_48 d.7.1.1 (A:) Membrane-bound lytic murein transclyc 3e-06
d1e0ga_48 d.7.1.1 (A:) Membrane-bound lytic murein transclyc 0.002
d1y7ma248 d.7.1.1 (A:1-48) Hypothetical protein YkuD, N-term 5e-06
d1y7ma248 d.7.1.1 (A:1-48) Hypothetical protein YkuD, N-term 0.003
>d1e0ga_ d.7.1.1 (A:) Membrane-bound lytic murein transclycosylase D, MltD {Escherichia coli [TaxId: 562]} Length = 48 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: LysM domain
superfamily: LysM domain
family: LysM domain
domain: Membrane-bound lytic murein transclycosylase D, MltD
species: Escherichia coli [TaxId: 562]

 Score = 41.9 bits (99), Expect = 3e-06
 Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 170 YLSYVVKDVDTLAGIAARYRTTLTDLMNANAMGSTAVKAGDILAVPL 216
            ++Y V+  D+L+ IA R+   + D+M  N+  +  ++ GD L + +
Sbjct: 2   SITYRVRKGDSLSSIAKRHGVNIKDVMRWNSDTAN-LQPGDKLTLFV 47
>d1e0ga_ d.7.1.1 (A:) Membrane-bound lytic murein transclycosylase D, MltD {Escherichia coli [TaxId: 562]} Length = 48 Back     information, alignment and structure
>d1y7ma2 d.7.1.1 (A:1-48) Hypothetical protein YkuD, N-terminal domain {Bacillus subtilis [TaxId: 1423]} Length = 48 Back     information, alignment and structure
>d1y7ma2 d.7.1.1 (A:1-48) Hypothetical protein YkuD, N-terminal domain {Bacillus subtilis [TaxId: 1423]} Length = 48 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query415
d1e0ga_48 Membrane-bound lytic murein transclycosylase D, Ml 99.4
d1y7ma248 Hypothetical protein YkuD, N-terminal domain {Baci 99.38
d1e0ga_48 Membrane-bound lytic murein transclycosylase D, Ml 99.2
d1y7ma248 Hypothetical protein YkuD, N-terminal domain {Baci 99.17
d1ijwc_47 HIN recombinase (DNA-binding domain) {Synthetic} 81.55
>d1e0ga_ d.7.1.1 (A:) Membrane-bound lytic murein transclycosylase D, MltD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: LysM domain
superfamily: LysM domain
family: LysM domain
domain: Membrane-bound lytic murein transclycosylase D, MltD
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=8.9e-14  Score=99.26  Aligned_cols=46  Identities=28%  Similarity=0.448  Sum_probs=43.1

Q ss_pred             eeEEecCCCCHHHHHHHhCCCHHHHHHhcCCCCCCcCCCCEEEECCC
Q 014940          171 LSYVVKDVDTLAGIAARYRTTLTDLMNANAMGSTAVKAGDILAVPLP  217 (415)
Q Consensus       171 ~tY~Vq~GDTL~sIA~rfgvt~~~L~~~N~l~~~~I~pGq~L~IPl~  217 (415)
                      .+|+|++|||||+||++||+++++|++||++.+ .|++||+|.||++
T Consensus         3 v~y~V~~GDTl~~IA~~y~vs~~~i~~~N~l~~-~l~~Gq~L~i~vk   48 (48)
T d1e0ga_           3 ITYRVRKGDSLSSIAKRHGVNIKDVMRWNSDTA-NLQPGDKLTLFVK   48 (48)
T ss_dssp             CEEEECTTCCHHHHHHHHTCCHHHHHHHCSCGG-GCCTTEEEECCCC
T ss_pred             EEEEECCCCCHHHHHHHHCCCHHHHHHHcCCcc-cCcCCCEEEEEeC
Confidence            689999999999999999999999999999864 6999999999985
>d1y7ma2 d.7.1.1 (A:1-48) Hypothetical protein YkuD, N-terminal domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1e0ga_ d.7.1.1 (A:) Membrane-bound lytic murein transclycosylase D, MltD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1y7ma2 d.7.1.1 (A:1-48) Hypothetical protein YkuD, N-terminal domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic} Back     information, alignment and structure