Citrus Sinensis ID: 014945

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-----
Protein Sequence
MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYKFFYVSRTC
Secondary Structure (PSIPRED)
cccccccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHcccccHHHHHHHHHHHHHHcccccccHHHHHHccHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHccccccccHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHcccHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mslrpnartevrrSKYKVAvdaeegrrrrEDNMVEIRKNKREESLLKKRREGlqahqpltnsaaldnkkleslpamvagvwsddrniqLDATTQFRKLLSiersppineviqsgvvprfieflsrddfpqLQFEAAWALTniasgtsentrvvidhgAVPIFVRLlssptddvREQAVWALGnvagdspkcrdlvlsngalmPLLAQFNEHAKLSMLRNATWTlsnfcrgkpqplfeqtrpalpaLERLihsnddevLTDACWALsylsdgtnDKIQAVIEAGVCPRLvellrhpspsvlipalrtvgnivtgddmqtqciinhqalPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISnatsggsneqiKYKFFYVSRTC
Flexible Loop (DISEMBL)
mslrpnartevrrskykvavdaeegrrrrednmveirknkreesllkkrreglqahqpltnsaaldnkklESLPAMVAGVWSDDRNIQLDATTQFRKLlsiersppineviqsGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWAlgnvagdspKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLrhpspsvlipALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISnatsggsneqikykffyvsrtc
Low Complexity Region (SEG)
MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNqiqaiieagiigPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYKFFYVSRTC
Disordered region (IsUnstruct)
*************************************************************************PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYKFFYV****
Disordered Region (DISOPRED)
***********************************IRKNKREESLLK************************SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYKFFYVSRTC
Disordered Region (DISEMBL)
*************SKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYKFFYVSRTC
Disordered Region (DISPRO)
******************AVDAEEGRRRREDNMVEIRKNKREESLLKK****************LDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYKFFYVSRTC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYKFFYVSRTC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	415	2.2.26 [Sep-21-2011]
Q71VM4	526	Importin subunit alpha-1a	yes	no	0.992	0.783	0.858	0.0
O22478	527	Importin subunit alpha OS	N/A	no	0.992	0.781	0.824	0.0
Q96321	532	Importin subunit alpha-1	no	no	0.978	0.763	0.808	0.0
Q9SLX0	534	Importin subunit alpha-1b	no	no	0.992	0.771	0.781	0.0
O04294	531	Importin subunit alpha-2	no	no	0.992	0.775	0.747	0.0
Q76P29	516	Importin subunit alpha-B	yes	no	0.973	0.782	0.630	1e-145
O35345	536	Importin subunit alpha-7	yes	no	0.896	0.694	0.581	1e-119
Q0V7M0	536	Importin subunit alpha-7	yes	no	0.896	0.694	0.581	1e-118
Q5RBV0	536	Importin subunit alpha-7	yes	no	0.896	0.694	0.578	1e-117
O60684	536	Importin subunit alpha-7	yes	no	0.896	0.694	0.578	1e-117

>sp|Q71VM4|IMA1A_ORYSJ Importin subunit alpha-1a OS=Oryza sativa subsp. japonica GN=Os01g0253300 PE=1 SV=2

 Score =  733 bits (1893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/416 (85%), Positives = 384/416 (92%), Gaps = 4/416 (0%)

Query: 1   MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLT 60
           MSLRP+ R EVRR++YKVAVDAEEGRRRREDNMVEIRK++REESLLKKRREGLQA  P+ 
Sbjct: 1   MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVP 60

Query: 61  NSAALD-NKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF 119
            SAA   +KKLESLPAM+ GV+SDD N+QL+ATTQFRKLLSIERSPPI EVIQSGVVPRF
Sbjct: 61  ASAATGVDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRF 120

Query: 120 IEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVW 179
           ++FL+R+DFPQLQFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL S +DDVREQAVW
Sbjct: 121 VQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVW 180

Query: 180 ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 239
           ALGNVAGDSPKCRDLVL+NGAL+PLLAQ NEH KLSMLRNATWTLSNFCRGKPQP FEQT
Sbjct: 181 ALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT 240

Query: 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 299
           RPALPAL RLIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSV
Sbjct: 241 RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSV 300

Query: 300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 359
           LIPALRTVGNIVTGDD QTQCII+HQALPCLL LLTQN KKSIKKEACWTISNITAGN +
Sbjct: 301 LIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKD 360

Query: 360 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYKFFYVSRTC 415
           QIQA+I AGIIGPLVNLL  AEF+IKKEAAWAISNATSGGS++QIKY    VS  C
Sbjct: 361 QIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKY---LVSEGC 413

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|O22478|IMA_SOLLC Importin subunit alpha OS=Solanum lycopersicum PE=2 SV=2

 Score =  706 bits (1823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/417 (82%), Positives = 381/417 (91%), Gaps = 5/417 (1%)

Query: 1   MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLT 60
           MSLRPN+RTE RRS+YKVAVDAEEGRRRREDNMVEIRKNKREE+LLKKRREGL   Q   
Sbjct: 1   MSLRPNSRTEARRSRYKVAVDAEEGRRRREDNMVEIRKNKREENLLKKRREGLLQAQQFP 60

Query: 61  NSAALD--NKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPR 118
           ++AA+   +KKLE+LP ++AGVWSDD ++QL+ TTQFRKLLSIER+PPI EVIQSGVVPR
Sbjct: 61  STAAVSHLDKKLETLPELIAGVWSDDSSLQLECTTQFRKLLSIERNPPIEEVIQSGVVPR 120

Query: 119 FIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAV 178
           F+EFL+RDD+PQLQFEAAWALTNIASGTSENT+VVID+G+VPIF+RLLSSP+DDVREQAV
Sbjct: 121 FVEFLARDDYPQLQFEAAWALTNIASGTSENTKVVIDYGSVPIFIRLLSSPSDDVREQAV 180

Query: 179 WALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ 238
           WALGN+AGDSPK RDLVL +GAL+ LLAQFNE AKLSMLRNATWTLSNFCRGKPQPLFEQ
Sbjct: 181 WALGNIAGDSPKYRDLVLGHGALVALLAQFNEQAKLSMLRNATWTLSNFCRGKPQPLFEQ 240

Query: 239 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS 298
           T+ ALP L RLIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVC RLVELL H SPS
Sbjct: 241 TKAALPTLGRLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCSRLVELLLHSSPS 300

Query: 299 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 358
           VLIPALRTVGNIVTGDD+QTQ +I+H ALPCL++LLTQNYKKSIKKEACWTISNITAGN 
Sbjct: 301 VLIPALRTVGNIVTGDDIQTQVMIDHHALPCLVNLLTQNYKKSIKKEACWTISNITAGNR 360

Query: 359 NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYKFFYVSRTC 415
           NQIQ +IEAGII PLV LL NAEFEIKKEAAWAISNATSGG+++QIK   F VS+ C
Sbjct: 361 NQIQIVIEAGIIAPLVYLLQNAEFEIKKEAAWAISNATSGGNHDQIK---FLVSQGC 414

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.

Solanum lycopersicum (taxid: 4081)

>sp|Q96321|IMA1_ARATH Importin subunit alpha-1 OS=Arabidopsis thaliana GN=KAP1 PE=1 SV=2

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/407 (80%), Positives = 373/407 (91%), Gaps = 1/407 (0%)

Query: 1   MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPL- 59
           MSLRPNA+TEVRR++YKVAVDAEEGRRRREDNMVEIRK+KREESL+KKRREG+QA Q   
Sbjct: 1   MSLRPNAKTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLMKKRREGMQALQGFP 60

Query: 60  TNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF 119
           + SAA  +KKL+SL  MVAGVWSDD  +QL++TTQFRKLLSIERSPPI EVI +GVVPRF
Sbjct: 61  SASAASVDKKLDSLKDMVAGVWSDDPALQLESTTQFRKLLSIERSPPIEEVISAGVVPRF 120

Query: 120 IEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVW 179
           +EFL ++D+P +QFEAAWALTNIASGTS++T+VVIDH AVPIFV+LL+SP+DDVREQAVW
Sbjct: 121 VEFLKKEDYPAIQFEAAWALTNIASGTSDHTKVVIDHNAVPIFVQLLASPSDDVREQAVW 180

Query: 180 ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 239
           ALGNVAGDSP+CRDLVL  GAL+PLL Q NEHAKLSMLRNATWTLSNFCRGKPQP F+Q 
Sbjct: 181 ALGNVAGDSPRCRDLVLGCGALLPLLNQLNEHAKLSMLRNATWTLSNFCRGKPQPHFDQV 240

Query: 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 299
           +PALPALERLIHS+D+EVLTDACWALSYLSDGTNDKIQ VI+AGV P+LVELL H SPSV
Sbjct: 241 KPALPALERLIHSDDEEVLTDACWALSYLSDGTNDKIQTVIQAGVVPKLVELLLHHSPSV 300

Query: 300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 359
           LIPALRTVGNIVTGDD+QTQC+IN  ALPCL +LLTQN+KKSIKKEACWTISNITAGN +
Sbjct: 301 LIPALRTVGNIVTGDDIQTQCVINSGALPCLANLLTQNHKKSIKKEACWTISNITAGNKD 360

Query: 360 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY 406
           QIQ ++EA +I PLV+LL NAEF+IKKEAAWAISNATSGGS++QIKY
Sbjct: 361 QIQTVVEANLISPLVSLLQNAEFDIKKEAAWAISNATSGGSHDQIKY 407

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs (By similarity). Cellular receptor for the nuclear import of the virD2 protein of Agrobacterium.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SLX0|IMA1B_ORYSJ Importin subunit alpha-1b OS=Oryza sativa subsp. japonica GN=Os05g0155500 PE=1 SV=2

 Score =  671 bits (1732), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/422 (78%), Positives = 369/422 (87%), Gaps = 10/422 (2%)

Query: 1   MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGL------- 53
           MSLRP+ R EVRRS+YKVAVDA+EGRRRREDNMVEIRK++REESLLKKRR+GL       
Sbjct: 1   MSLRPSERAEVRRSRYKVAVDADEGRRRREDNMVEIRKSRREESLLKKRRDGLPAAAAAA 60

Query: 54  QAHQPLTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQS 113
            A  PL   ++   +KLE LPAMV  V SDD  +QL+ATTQFRKLLSIERSPPI EVI +
Sbjct: 61  AAASPLLAHSSALQQKLEGLPAMVQAVQSDDSAVQLEATTQFRKLLSIERSPPIEEVINT 120

Query: 114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDV 173
           GVVPRFI FL R+D+PQLQFEAAWALTNIASGTS+NT+VV++ GAVPIFV+LLSSP++DV
Sbjct: 121 GVVPRFIAFLQREDYPQLQFEAAWALTNIASGTSDNTKVVVESGAVPIFVKLLSSPSEDV 180

Query: 174 REQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ 233
           REQAVWALGNVAGDSPKCRDLVL++G L PLL Q NEHAKLSMLRNATWTLSNFCRGKPQ
Sbjct: 181 REQAVWALGNVAGDSPKCRDLVLASGGLYPLLQQLNEHAKLSMLRNATWTLSNFCRGKPQ 240

Query: 234 PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR 293
           P FEQ +PAL AL+RLIHS D+EVLTDACWALSYLSDGTNDKIQAVIE+GV PRLVELL 
Sbjct: 241 PNFEQVKPALSALQRLIHSQDEEVLTDACWALSYLSDGTNDKIQAVIESGVFPRLVELLM 300

Query: 294 HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 353
           HPS SVLIPALRTVGNIVTGDDMQTQC+I+HQALPCLL+LLT N+KKSIKKEACWTISNI
Sbjct: 301 HPSASVLIPALRTVGNIVTGDDMQTQCVIDHQALPCLLNLLTNNHKKSIKKEACWTISNI 360

Query: 354 TAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYKFFYVSR 413
           TAGN  QIQA+I A II PLV+LL  AEF+IKKEAAWAISNATSGG+++QIKY    V++
Sbjct: 361 TAGNREQIQAVINANIIAPLVHLLQTAEFDIKKEAAWAISNATSGGTHDQIKY---LVAQ 417

Query: 414 TC 415
            C
Sbjct: 418 GC 419

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. In conjunction with importin beta-1, mediates the nuclear envelope docking, and the subsequent translocation into the nucleus of the constitutive morphogenetic 1 (COP1) protein containing bipartite NLS motif.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O04294|IMA2_ARATH Importin subunit alpha-2 OS=Arabidopsis thaliana GN=KAP2 PE=1 SV=2

 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/419 (74%), Positives = 362/419 (86%), Gaps = 7/419 (1%)

Query: 1   MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLT 60
           MSLRP+A+TEVRR++YKVAVDAEEGRRRREDN+VEIRKNKREE+L KKR     A    T
Sbjct: 1   MSLRPSAKTEVRRNRYKVAVDAEEGRRRREDNLVEIRKNKREENLQKKRFTSSMAFGSAT 60

Query: 61  NSAALD----NKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVV 116
                D    N+  ++LPAMVAG+WS+D N QL+AT   RKLLSIE++PPINEV+QSGVV
Sbjct: 61  GQTEQDLSSANQLKDNLPAMVAGIWSEDSNSQLEATNLLRKLLSIEQNPPINEVVQSGVV 120

Query: 117 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQ 176
           PR ++FLSRDDFP+LQFEAAWALTNIASGTSENT V+I+ GAVPIF++LLSS ++DVREQ
Sbjct: 121 PRVVKFLSRDDFPKLQFEAAWALTNIASGTSENTNVIIESGAVPIFIQLLSSASEDVREQ 180

Query: 177 AVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 236
           AVWALGNVAGDSPKCRDLVLS GA+ PLL+QFNE+ KLSMLRNATWTLSNFCRGKP P F
Sbjct: 181 AVWALGNVAGDSPKCRDLVLSYGAMTPLLSQFNENTKLSMLRNATWTLSNFCRGKPPPAF 240

Query: 237 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS 296
           EQT+PALP LERL+ S D+EVLTDACWALSYLSD +NDKIQAVIEAGV PRL++LL H S
Sbjct: 241 EQTQPALPVLERLVQSMDEEVLTDACWALSYLSDNSNDKIQAVIEAGVVPRLIQLLGHSS 300

Query: 297 PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356
           PSVLIPALRT+GNIVTGDD+QTQ +++ QALPCLL+LL  NYKKSIKKEACWTISNITAG
Sbjct: 301 PSVLIPALRTIGNIVTGDDLQTQMVLDQQALPCLLNLLKNNYKKSIKKEACWTISNITAG 360

Query: 357 NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYKFFYVSRTC 415
           N +QIQA+I+AGII  LV +L +AEFE+KKEAAW ISNATSGG+++QIK   F VS+ C
Sbjct: 361 NADQIQAVIDAGIIQSLVWVLQSAEFEVKKEAAWGISNATSGGTHDQIK---FMVSQGC 416

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q76P29|IMAB_DICDI Importin subunit alpha-B OS=Dictyostelium discoideum GN=DDB_G0272318 PE=3 SV=1

 Score =  513 bits (1322), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 259/411 (63%), Positives = 327/411 (79%), Gaps = 7/411 (1%)

Query: 7   ARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALD 66
           ++ E R+S+YK ++D++E RR+RE+  + IRKNKREESLLKKR + +    P+    +L 
Sbjct: 4   SKQETRKSQYKKSIDSDESRRKREEASLSIRKNKREESLLKKRTQAVPGSTPV-KVDSLI 62

Query: 67  NKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD 126
           N++LE LP++VA + S++ ++ L +TT FRKLLSIE+SPPI EVI++G+VPR ++FL   
Sbjct: 63  NQRLEQLPSLVAEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIVPRLVKFLYMQ 122

Query: 127 DFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG 186
           DFPQLQFEAAWALTNIASGT E TRVVI++GA+ +FV LLSSP DDVREQAVWALGN+AG
Sbjct: 123 DFPQLQFEAAWALTNIASGTPEQTRVVIENGAIQVFVLLLSSPHDDVREQAVWALGNIAG 182

Query: 187 DSPKCRDLVLSNGALMPLLAQFNEHA--KLSMLRNATWTLSNFCRGKPQPLFEQTRPALP 244
           DS  CRDLVLS+ AL PLL+     A  K+SM+RNATWTLSNFCRGKPQP FE  R +LP
Sbjct: 183 DSHYCRDLVLSHNALPPLLSLLQNPAAIKVSMVRNATWTLSNFCRGKPQPPFEIVRASLP 242

Query: 245 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPAL 304
            L +LI+  D+EVL DACWALSYLSDG+N++IQ VI+A VC ++VELL HP+ +V  PAL
Sbjct: 243 VLAKLIYYQDEEVLIDACWALSYLSDGSNERIQEVIDAKVCRKMVELLGHPTIAVQTPAL 302

Query: 305 RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI 364
           RT+GNIVTGDD QTQ +++ QAL  LL+LL Q+ K++I+KEACWTISNITAG+ NQIQ +
Sbjct: 303 RTIGNIVTGDDNQTQIVLSVQALSHLLNLL-QSPKRAIRKEACWTISNITAGDKNQIQQV 361

Query: 365 IEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYKFFYVSRTC 415
           I+A II  LV LL NAEFEI+KEAAWAISNATS G+ +QI    F VS+ C
Sbjct: 362 IDANIIPSLVYLLANAEFEIQKEAAWAISNATSCGTPQQI---HFLVSQGC 409

Functions in nuclear protein import via a substrate-importin alpha-beta transport complex that passes though the nuclear pore complexes (NPC). Binds specifically and directly to substrates containing either a simple or bipartite NLS motif.

Dictyostelium discoideum (taxid: 44689)

>sp|O35345|IMA7_MOUSE Importin subunit alpha-7 OS=Mus musculus GN=Kpna6 PE=1 SV=2

 Score =  427 bits (1098), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/382 (58%), Positives = 276/382 (72%), Gaps = 10/382 (2%)

Query: 34  VEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKKLESLPA-------MVAGVWSDDRN 86
           +++RK KRE+ L K+R   L   +     + L +  + S          MV  ++SDD +
Sbjct: 36  IQLRKQKREQQLFKRRNVELINEEAAMFDSLLMDSYVSSTTGESVITREMVEMLFSDDSD 95

Query: 87  IQLDATTQFRKLLSIERSPPINEVIQS-GVVPRFIEFLSRDDFPQLQFEAAWALTNIASG 145
           +QL  T +FRKLLS E SPPI+EVI + GVV RF+EFL R++   LQFEAAWALTNIASG
Sbjct: 96  LQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRNENCTLQFEAAWALTNIASG 155

Query: 146 TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLL 205
           TS+ T++VI+ GAVPIF+ LL+S  +DV+EQAVWALGN+AGDS  CRD VL+   L PLL
Sbjct: 156 TSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSLCRDYVLNCSILNPLL 215

Query: 206 AQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWA 264
               +  +L+M RNA W LSN CRGK P P F +  P LP L RL+ S+D ++L DACWA
Sbjct: 216 TLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLADACWA 275

Query: 265 LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH 324
           LSYLSDG N+KIQAVI++GVC RLVELL H    V  PALR VGNIVTGDD+QTQ I+N 
Sbjct: 276 LSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTGDDIQTQVILNC 335

Query: 325 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI 384
            ALPCLL LL+ + K+SI+KEACWTISNITAGN  QIQA+I+A I   L+ +L  AEF  
Sbjct: 336 SALPCLLHLLSSS-KESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEILQKAEFRT 394

Query: 385 KKEAAWAISNATSGGSNEQIKY 406
           +KEAAWAI+NATSGG+ EQI+Y
Sbjct: 395 RKEAAWAITNATSGGTPEQIRY 416

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Mus musculus (taxid: 10090)

>sp|Q0V7M0|IMA7_BOVIN Importin subunit alpha-7 OS=Bos taurus GN=KPNA6 PE=2 SV=1

 Score =  425 bits (1093), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 222/382 (58%), Positives = 276/382 (72%), Gaps = 10/382 (2%)

Query: 34  VEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKKLESLPA-------MVAGVWSDDRN 86
           +++RK KRE+ L K+R   L   +     + L +  + S          MV  ++SDD +
Sbjct: 36  IQLRKQKREQQLFKRRNVELINEEAAMFDSLLMDSYVSSTTGESVITREMVEMLFSDDPD 95

Query: 87  IQLDATTQFRKLLSIERSPPINEVIQS-GVVPRFIEFLSRDDFPQLQFEAAWALTNIASG 145
           +QL  T +FRKLLS E SPPI+EVI + GVV RF+EFL R++   LQFEAAWALTNIASG
Sbjct: 96  LQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRNENCTLQFEAAWALTNIASG 155

Query: 146 TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLL 205
           TS+ T++VI+ GAVPIF+ LL+S  +DV+EQAVWALGN+AGDS  CRD VL+   L PLL
Sbjct: 156 TSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDYVLNCSILNPLL 215

Query: 206 AQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWA 264
               +  +L+M RNA W LSN CRGK P P F +  P LP L RL+ S+D ++L DACWA
Sbjct: 216 TLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLADACWA 275

Query: 265 LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH 324
           LSYLSDG N+KIQAVI++GVC RLVELL H    V  PALR VGNIVTGDD+QTQ I+N 
Sbjct: 276 LSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDNKVASPALRAVGNIVTGDDIQTQVILNC 335

Query: 325 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI 384
            ALPCLL LL+ + K+SI+KEACWTISNITAGN  QIQA+I+A I   L+ +L  AEF  
Sbjct: 336 SALPCLLHLLSSS-KESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEILQKAEFRT 394

Query: 385 KKEAAWAISNATSGGSNEQIKY 406
           +KEAAWAI+NATSGG+ EQI+Y
Sbjct: 395 RKEAAWAITNATSGGTPEQIRY 416

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Bos taurus (taxid: 9913)

>sp|Q5RBV0|IMA7_PONAB Importin subunit alpha-7 OS=Pongo abelii GN=KPNA6 PE=2 SV=1

 Score =  422 bits (1085), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 221/382 (57%), Positives = 275/382 (71%), Gaps = 10/382 (2%)

Query: 34  VEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKKLESLPA-------MVAGVWSDDRN 86
           +++RK KRE+ L K+R   L   +     + L +  + S          MV  ++SDD +
Sbjct: 36  IQLRKQKREQQLFKRRNVELINEEAAMFDSLLMDSYVSSTTGESVITREMVEMLFSDDSD 95

Query: 87  IQLDATTQFRKLLSIERSPPINEVIQSG-VVPRFIEFLSRDDFPQLQFEAAWALTNIASG 145
           +QL  T +FRKLLS E SPPI+EVI +  VV RF+EFL R++   LQFEAAWALTNIASG
Sbjct: 96  LQLATTQKFRKLLSKEPSPPIDEVINTPRVVDRFVEFLKRNENCTLQFEAAWALTNIASG 155

Query: 146 TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLL 205
           TS+ T++VI+ GAVPIF+ LL+S  +DV+EQAVWALGN+AGDS  CRD VL+   L PLL
Sbjct: 156 TSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDYVLNCSILNPLL 215

Query: 206 AQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWA 264
               +  +L+M RNA W LSN CRGK P P F +  P LP L RL+ S+D ++L DACWA
Sbjct: 216 TLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLADACWA 275

Query: 265 LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH 324
           LSYLSDG N+KIQAVI++GVC RLVELL H    V  PALR VGNIVTGDD+QTQ I+N 
Sbjct: 276 LSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTGDDIQTQVILNC 335

Query: 325 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI 384
            ALPCLL LL+ + K+SI+KEACWTISNITAGN  QIQA+I+A I   L+ +L  AEF  
Sbjct: 336 SALPCLLHLLS-SPKESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEILQKAEFRT 394

Query: 385 KKEAAWAISNATSGGSNEQIKY 406
           +KEAAWAI+NATSGG+ EQI+Y
Sbjct: 395 RKEAAWAITNATSGGTPEQIRY 416

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Pongo abelii (taxid: 9601)

>sp|O60684|IMA7_HUMAN Importin subunit alpha-7 OS=Homo sapiens GN=KPNA6 PE=1 SV=1

 Score =  422 bits (1085), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 221/382 (57%), Positives = 275/382 (71%), Gaps = 10/382 (2%)

Query: 34  VEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKKLESLPA-------MVAGVWSDDRN 86
           +++RK KRE+ L K+R   L   +     + L +  + S          MV  ++SDD +
Sbjct: 36  IQLRKQKREQQLFKRRNVELINEEAAMFDSLLMDSYVSSTTGESVITREMVEMLFSDDSD 95

Query: 87  IQLDATTQFRKLLSIERSPPINEVIQSG-VVPRFIEFLSRDDFPQLQFEAAWALTNIASG 145
           +QL  T +FRKLLS E SPPI+EVI +  VV RF+EFL R++   LQFEAAWALTNIASG
Sbjct: 96  LQLATTQKFRKLLSKEPSPPIDEVINTPRVVDRFVEFLKRNENCTLQFEAAWALTNIASG 155

Query: 146 TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLL 205
           TS+ T++VI+ GAVPIF+ LL+S  +DV+EQAVWALGN+AGDS  CRD VL+   L PLL
Sbjct: 156 TSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDYVLNCSILNPLL 215

Query: 206 AQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWA 264
               +  +L+M RNA W LSN CRGK P P F +  P LP L RL+ S+D ++L DACWA
Sbjct: 216 TLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLADACWA 275

Query: 265 LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH 324
           LSYLSDG N+KIQAVI++GVC RLVELL H    V  PALR VGNIVTGDD+QTQ I+N 
Sbjct: 276 LSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTGDDIQTQVILNC 335

Query: 325 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI 384
            ALPCLL LL+ + K+SI+KEACWTISNITAGN  QIQA+I+A I   L+ +L  AEF  
Sbjct: 336 SALPCLLHLLS-SPKESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEILQKAEFRT 394

Query: 385 KKEAAWAISNATSGGSNEQIKY 406
           +KEAAWAI+NATSGG+ EQI+Y
Sbjct: 395 RKEAAWAITNATSGGTPEQIRY 416

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	415
118488338	419	unknown [Populus trichocarpa]	0.983	0.973	0.865	0.0
255542844	531	importin alpha, putative [Ricinus commun	0.987	0.772	0.866	0.0
224128392	538	predicted protein [Populus trichocarpa]	0.992	0.765	0.853	0.0
125525217	526	hypothetical protein OsI_01208 [Oryza sa	0.992	0.783	0.860	0.0
440690795	528	Chain A, Rimp_alpha1a	0.992	0.780	0.858	0.0
33337497	526	importin [Oryza sativa]	0.992	0.783	0.858	0.0
115435706	526	Os01g0253300 [Oryza sativa Japonica Grou	0.992	0.783	0.858	0.0
225450645	527	PREDICTED: importin subunit alpha-1 isof	0.978	0.770	0.867	0.0
356564581	530	PREDICTED: importin subunit alpha-1-like	0.987	0.773	0.856	0.0
225437493	529	PREDICTED: importin subunit alpha [Vitis	0.992	0.778	0.858	0.0

>gi|118488338|gb|ABK95987.1| unknown [Populus trichocarpa]

 Score =  739 bits (1908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/416 (86%), Positives = 389/416 (93%), Gaps = 8/416 (1%)

Query: 1   MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQP-- 58
           MSLRPNAR EVRR+KYKVAVDA+EGRRRREDN+VEIRKNKREESLLKKRREGLQA Q   
Sbjct: 1   MSLRPNARVEVRRNKYKVAVDADEGRRRREDNLVEIRKNKREESLLKKRREGLQAQQQQQ 60

Query: 59  ----LTNSAALD--NKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQ 112
               +T+S  +   +K L++LPAM+AGVWSDD+NIQ + TT FRKLLSIERSPPINEVIQ
Sbjct: 61  QQQQVTSSLNISASDKPLDTLPAMIAGVWSDDKNIQFEGTTHFRKLLSIERSPPINEVIQ 120

Query: 113 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDD 172
           SGVVPRFIEFL+RDDFPQLQFEAAWALTNIASGTSENTRVVIDHGA+PIFV+LLSSP +D
Sbjct: 121 SGVVPRFIEFLARDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAIPIFVKLLSSPAED 180

Query: 173 VREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 232
           VREQAVWALGNVAGDSPKCRDLVL +GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP
Sbjct: 181 VREQAVWALGNVAGDSPKCRDLVLGHGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 240

Query: 233 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 292
           QPLF+QT+PALPALERLIHSND+EVLTDACWALSYLSDG+N+KIQAVIEAGVCPRLVELL
Sbjct: 241 QPLFDQTKPALPALERLIHSNDNEVLTDACWALSYLSDGSNEKIQAVIEAGVCPRLVELL 300

Query: 293 RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 352
           RH SP+VLIPALR VGNIVTGDDMQTQC+INHQALPCLL+LLT NYKKSIKKEACWTISN
Sbjct: 301 RHQSPTVLIPALRAVGNIVTGDDMQTQCMINHQALPCLLNLLTNNYKKSIKKEACWTISN 360

Query: 353 ITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYKF 408
           +TAGN NQIQA++EAGIIGPLV LL NAEFEIKKEAAWAISNATSGGS+EQIKY F
Sbjct: 361 VTAGNANQIQAVLEAGIIGPLVQLLQNAEFEIKKEAAWAISNATSGGSHEQIKYLF 416

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542844|ref|XP_002512485.1| importin alpha, putative [Ricinus communis] gi|223548446|gb|EEF49937.1| importin alpha, putative [Ricinus communis]

 Score =  737 bits (1903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/418 (86%), Positives = 391/418 (93%), Gaps = 8/418 (1%)

Query: 1   MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLT 60
           MSLRP+ARTEVRR++YKVAVDAEEGRRRREDNMVEIRKN+REESL KKRREGLQA QP+ 
Sbjct: 1   MSLRPSARTEVRRNRYKVAVDAEEGRRRREDNMVEIRKNRREESLQKKRREGLQA-QPMP 59

Query: 61  ---NSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVP 117
              +S+A++ KKLE LP+MVAGVWSDD N+QL+ATTQFRKLLSIERSPPI EVIQ+GVVP
Sbjct: 60  ASLHSSAVE-KKLEHLPSMVAGVWSDDSNLQLEATTQFRKLLSIERSPPIEEVIQAGVVP 118

Query: 118 RFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQA 177
           RF+EFL R+DFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFV+LL+SP+DDVREQA
Sbjct: 119 RFVEFLMREDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVKLLASPSDDVREQA 178

Query: 178 VWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE 237
           VWALGNVAGDSPKCRDLVL NGAL+PLLAQ NEHAKLSMLRNATWTLSNFCRGKPQP FE
Sbjct: 179 VWALGNVAGDSPKCRDLVLGNGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPFFE 238

Query: 238 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP 297
           Q +PALPAL RLIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSP
Sbjct: 239 QVKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSP 298

Query: 298 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 357
           SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLL+LLT NYKKSIKKEACWTISNITAGN
Sbjct: 299 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAGN 358

Query: 358 VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYKFFYVSRTC 415
             QIQA+IEA IIGPLV+LL NAEF+IKKEAAWAISNATSGG+++QIKY    VS+ C
Sbjct: 359 KEQIQAVIEANIIGPLVHLLENAEFDIKKEAAWAISNATSGGTHDQIKY---LVSQGC 413

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128392|ref|XP_002320318.1| predicted protein [Populus trichocarpa] gi|222861091|gb|EEE98633.1| predicted protein [Populus trichocarpa]

 Score =  735 bits (1898), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/423 (85%), Positives = 391/423 (92%), Gaps = 11/423 (2%)

Query: 1   MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQP-- 58
           MSLRPNAR EVRR+KYKVAVDA+EGRRRREDN+VEIRKNKREESLLKKRREGLQA Q   
Sbjct: 1   MSLRPNARVEVRRNKYKVAVDADEGRRRREDNLVEIRKNKREESLLKKRREGLQAQQQQQ 60

Query: 59  ----LTNSAALD--NKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQ 112
               +T+S  +   +K L++LPAM+AGVWSDD+NIQ + TT FRKLLSIERSPPINEVIQ
Sbjct: 61  QQQQVTSSLNISASDKPLDTLPAMIAGVWSDDKNIQFEGTTHFRKLLSIERSPPINEVIQ 120

Query: 113 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDD 172
           SGVVPRFIEFL+RDDFPQLQFEAAWALTNIASGTSENTRVVIDHGA+PIFV+LLSSP +D
Sbjct: 121 SGVVPRFIEFLARDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAIPIFVKLLSSPAED 180

Query: 173 VREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 232
           VREQAVWALGNVAGDSPKCRDLVL +GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP
Sbjct: 181 VREQAVWALGNVAGDSPKCRDLVLGHGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 240

Query: 233 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 292
           QPLF+QT+PALPALERLIHSND+EVLTDACWALSYLSDG+N+KIQAVIEAGVCPRLVELL
Sbjct: 241 QPLFDQTKPALPALERLIHSNDNEVLTDACWALSYLSDGSNEKIQAVIEAGVCPRLVELL 300

Query: 293 RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 352
           RH SP+VLIPALR VGNIVTGDDMQTQC+INHQALPCLL+LLT NYKKSIKKEACWTISN
Sbjct: 301 RHQSPTVLIPALRAVGNIVTGDDMQTQCMINHQALPCLLNLLTNNYKKSIKKEACWTISN 360

Query: 353 ITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYKFFYVS 412
           +TAGN NQIQA++EAGIIGPLV LL NAEFEIKKEAAWAISNATSGGS+EQIK   F V 
Sbjct: 361 VTAGNANQIQAVLEAGIIGPLVQLLQNAEFEIKKEAAWAISNATSGGSHEQIK---FLVD 417

Query: 413 RTC 415
           + C
Sbjct: 418 QGC 420

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125525217|gb|EAY73331.1| hypothetical protein OsI_01208 [Oryza sativa Indica Group]

 Score =  735 bits (1897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/416 (86%), Positives = 385/416 (92%), Gaps = 4/416 (0%)

Query: 1   MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLT 60
           MSLRP+ R EVRR++YKVAVDAEEGRRRREDNMVEIRK++REESLLKKRREGLQA  P+ 
Sbjct: 1   MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVP 60

Query: 61  NSAALD-NKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF 119
            SAA   +KKLESLPAM+ GV+SDD N+QL+ATTQFRKLLSIERSPPI EVIQSGVVPRF
Sbjct: 61  ASAATGVDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRF 120

Query: 120 IEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVW 179
           ++FL+R+DFPQLQFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL S +DDVREQAVW
Sbjct: 121 VQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVW 180

Query: 180 ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 239
           ALGNVAGDSPKCRDLVL+NGAL+PLLAQ NEHAKLSMLRNATWTLSNFCRGKPQP FEQT
Sbjct: 181 ALGNVAGDSPKCRDLVLANGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPSFEQT 240

Query: 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 299
           RPALPAL RLIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSV
Sbjct: 241 RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSV 300

Query: 300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 359
           LIPALRTVGNIVTGDD QTQCII+HQALPCLL LLTQN KKSIKKEACWTISNITAGN +
Sbjct: 301 LIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKD 360

Query: 360 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYKFFYVSRTC 415
           QIQA+I AGIIGPLVNLL  AEF+IKKEAAWAISNATSGGS++QIKY    VS  C
Sbjct: 361 QIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKY---LVSEGC 413

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|440690795|pdb|4B8J|A Chain A, Rimp_alpha1a

 Score =  734 bits (1895), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/416 (85%), Positives = 384/416 (92%), Gaps = 4/416 (0%)

Query: 1   MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLT 60
           MSLRP+ R EVRR++YKVAVDAEEGRRRREDNMVEIRK++REESLLKKRREGLQA  P+ 
Sbjct: 3   MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVP 62

Query: 61  NSAALD-NKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF 119
            SAA   +KKLESLPAM+ GV+SDD N+QL+ATTQFRKLLSIERSPPI EVIQSGVVPRF
Sbjct: 63  ASAATGVDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRF 122

Query: 120 IEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVW 179
           ++FL+R+DFPQLQFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL S +DDVREQAVW
Sbjct: 123 VQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVW 182

Query: 180 ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 239
           ALGNVAGDSPKCRDLVL+NGAL+PLLAQ NEH KLSMLRNATWTLSNFCRGKPQP FEQT
Sbjct: 183 ALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT 242

Query: 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 299
           RPALPAL RLIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSV
Sbjct: 243 RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSV 302

Query: 300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 359
           LIPALRTVGNIVTGDD QTQCII+HQALPCLL LLTQN KKSIKKEACWTISNITAGN +
Sbjct: 303 LIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKD 362

Query: 360 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYKFFYVSRTC 415
           QIQA+I AGIIGPLVNLL  AEF+IKKEAAWAISNATSGGS++QIKY    VS  C
Sbjct: 363 QIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKY---LVSEGC 415

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33337497|gb|AAQ13406.1|AF005265_1 importin [Oryza sativa]

 Score =  734 bits (1895), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/416 (85%), Positives = 384/416 (92%), Gaps = 4/416 (0%)

Query: 1   MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLT 60
           MSLRP+ R EVRR++YKVAVDAEEGRRRREDNMVEIRK++REESLLKKRREGLQA  P+ 
Sbjct: 1   MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVP 60

Query: 61  NSAALD-NKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF 119
            SAA   +KKLESLPAM+ GV+SDD N+QL+ATTQFRKLLSIERSPPI EVIQSGVVPRF
Sbjct: 61  ASAATGVDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRF 120

Query: 120 IEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVW 179
           ++FL+R+DFPQLQFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL S +DDVREQAVW
Sbjct: 121 VQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVW 180

Query: 180 ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 239
           ALGNVAGDSPKCRDLVL+NGAL+PLLAQ NEH KLSMLRNATWTLSNFCRGKPQP FEQT
Sbjct: 181 ALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT 240

Query: 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 299
           RPALPAL RLIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSV
Sbjct: 241 RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSV 300

Query: 300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 359
           LIPALRTVGNIVTGDD QTQCII+HQALPCLL LLTQN KKSIKKEACWTISNITAGN +
Sbjct: 301 LIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKD 360

Query: 360 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYKFFYVSRTC 415
           QIQA+I AGIIGPLVNLL  AEF+IKKEAAWAISNATSGGS++QIKY    VS  C
Sbjct: 361 QIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKY---LVSEGC 413

Source: Oryza sativa

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115435706|ref|NP_001042611.1| Os01g0253300 [Oryza sativa Japonica Group] gi|62900360|sp|Q71VM4.2|IMA1A_ORYSJ RecName: Full=Importin subunit alpha-1a gi|3273243|dbj|BAA31165.1| NLS receptor [Oryza sativa] gi|3273245|dbj|BAA31166.1| NLS receptor [Oryza sativa Japonica Group] gi|6498466|dbj|BAA87855.1| putative importin alpha 2 [Oryza sativa Japonica Group] gi|113532142|dbj|BAF04525.1| Os01g0253300 [Oryza sativa Japonica Group] gi|125569759|gb|EAZ11274.1| hypothetical protein OsJ_01128 [Oryza sativa Japonica Group] gi|215687001|dbj|BAG90815.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  733 bits (1893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/416 (85%), Positives = 384/416 (92%), Gaps = 4/416 (0%)

Query: 1   MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLT 60
           MSLRP+ R EVRR++YKVAVDAEEGRRRREDNMVEIRK++REESLLKKRREGLQA  P+ 
Sbjct: 1   MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVP 60

Query: 61  NSAALD-NKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF 119
            SAA   +KKLESLPAM+ GV+SDD N+QL+ATTQFRKLLSIERSPPI EVIQSGVVPRF
Sbjct: 61  ASAATGVDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRF 120

Query: 120 IEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVW 179
           ++FL+R+DFPQLQFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL S +DDVREQAVW
Sbjct: 121 VQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVW 180

Query: 180 ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 239
           ALGNVAGDSPKCRDLVL+NGAL+PLLAQ NEH KLSMLRNATWTLSNFCRGKPQP FEQT
Sbjct: 181 ALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT 240

Query: 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 299
           RPALPAL RLIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSV
Sbjct: 241 RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSV 300

Query: 300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 359
           LIPALRTVGNIVTGDD QTQCII+HQALPCLL LLTQN KKSIKKEACWTISNITAGN +
Sbjct: 301 LIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKD 360

Query: 360 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYKFFYVSRTC 415
           QIQA+I AGIIGPLVNLL  AEF+IKKEAAWAISNATSGGS++QIKY    VS  C
Sbjct: 361 QIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKY---LVSEGC 413

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450645|ref|XP_002282816.1| PREDICTED: importin subunit alpha-1 isoform 1 [Vitis vinifera] gi|296089748|emb|CBI39567.3| unnamed protein product [Vitis vinifera]

 Score =  730 bits (1884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/407 (86%), Positives = 382/407 (93%), Gaps = 1/407 (0%)

Query: 1   MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQ-PL 59
           MSLRP+ARTEVRR++YKV+VDAEEGRRRREDNMVEIRKN+REESL KKRREGLQA   P 
Sbjct: 1   MSLRPSARTEVRRNRYKVSVDAEEGRRRREDNMVEIRKNRREESLQKKRREGLQAQTLPA 60

Query: 60  TNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF 119
           +  +A   KKLE LP+MVAGVW+DD NIQL+ATTQFRKLLSIER PPI EVIQSGVVPRF
Sbjct: 61  SIHSAAVEKKLEFLPSMVAGVWTDDSNIQLEATTQFRKLLSIERCPPIEEVIQSGVVPRF 120

Query: 120 IEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVW 179
           +EFL R+DFPQLQFEAAWALTNIASGTS+NT+VVIDHGAVP+FV+LL SP+DDVREQAVW
Sbjct: 121 VEFLVREDFPQLQFEAAWALTNIASGTSDNTKVVIDHGAVPVFVKLLGSPSDDVREQAVW 180

Query: 180 ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 239
           ALGNVAGDSP+CRDLVL +GAL+PLLAQ NEHAKLSMLRNATWTLSNFCRGKPQP F+QT
Sbjct: 181 ALGNVAGDSPRCRDLVLGHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQT 240

Query: 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 299
           +PALPALERLIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSV
Sbjct: 241 KPALPALERLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSV 300

Query: 300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 359
           LIPALRTVGNIVTGDDMQTQCIINHQALPCLL+LLT N+KKSIKKEACWTISNITAGN  
Sbjct: 301 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLNLLTNNHKKSIKKEACWTISNITAGNKE 360

Query: 360 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY 406
           QIQA+IEA IIGPLV+LL NAEF+IKKEAAWAISNATSGGS+EQIKY
Sbjct: 361 QIQAVIEANIIGPLVHLLQNAEFDIKKEAAWAISNATSGGSHEQIKY 407

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564581|ref|XP_003550530.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  729 bits (1882), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/419 (85%), Positives = 386/419 (92%), Gaps = 9/419 (2%)

Query: 1   MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQ--- 57
           MSLRPNARTE+RR++YKVAVDA+EGRRRREDNMVEIRK+KREESLLKKRREGLQA Q   
Sbjct: 1   MSLRPNARTEIRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLLKKRREGLQAQQQFP 60

Query: 58  -PLTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVV 116
            PL NS    +KKLESLPAMVAGVWSDD +IQL+ATTQFRKLLSIERSPPI EVIQ+GVV
Sbjct: 61  APLQNSTV--DKKLESLPAMVAGVWSDDNSIQLEATTQFRKLLSIERSPPIEEVIQAGVV 118

Query: 117 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQ 176
           PRF+EFL R+DFPQLQFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LLSSP+DDVREQ
Sbjct: 119 PRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQ 178

Query: 177 AVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 236
           AVWALGNVAGDSP+CRDLVLS GAL+PLLAQ NEHAKLSMLRNATWTLSNFCRGKPQP F
Sbjct: 179 AVWALGNVAGDSPRCRDLVLSQGALVPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPF 238

Query: 237 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS 296
           EQ RPALPALERL+ SND+EVLTDACWALSYLSDGTNDKIQAVIEAGVC RLV+LL HPS
Sbjct: 239 EQVRPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCARLVQLLIHPS 298

Query: 297 PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356
           PSVLIPALRTVGNIVTGDDMQTQCIINH ALPCLL+LLT N+KKSIKKEACWTISNITAG
Sbjct: 299 PSVLIPALRTVGNIVTGDDMQTQCIINHGALPCLLNLLTNNHKKSIKKEACWTISNITAG 358

Query: 357 NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYKFFYVSRTC 415
           N  QIQ +IEAG++ PLVNLL NAEF+IKKEAAWAISNATSGG +EQIKY    VS+ C
Sbjct: 359 NKEQIQTVIEAGLVAPLVNLLQNAEFDIKKEAAWAISNATSGGIHEQIKY---LVSQGC 414

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437493|ref|XP_002274422.1| PREDICTED: importin subunit alpha [Vitis vinifera] gi|147778789|emb|CAN75951.1| hypothetical protein VITISV_028605 [Vitis vinifera] gi|297743948|emb|CBI36918.3| unnamed protein product [Vitis vinifera]

 Score =  726 bits (1875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/416 (85%), Positives = 385/416 (92%), Gaps = 4/416 (0%)

Query: 1   MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLT 60
           MSLRP+ARTEVRR++YKVAVDAEEGRRRREDN+VEIRKNKREESL KKRREGLQA Q  T
Sbjct: 1   MSLRPSARTEVRRNRYKVAVDAEEGRRRREDNLVEIRKNKREESLQKKRREGLQAQQFTT 60

Query: 61  N-SAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF 119
             SA+   +KLESLPAMVAGVWS+D N+QL+ATT FRKLLSIERSPPINEVIQSGVVPR 
Sbjct: 61  PVSASTFERKLESLPAMVAGVWSEDSNLQLEATTYFRKLLSIERSPPINEVIQSGVVPRL 120

Query: 120 IEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVW 179
           +EFL RDDFPQLQFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL S  DDVREQAVW
Sbjct: 121 VEFLGRDDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSQNDDVREQAVW 180

Query: 180 ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 239
           ALGNVAGDSPKCRDLVL +GALMPL+AQFNEHAKLSMLRNATWTLSNFCRGKPQP FEQT
Sbjct: 181 ALGNVAGDSPKCRDLVLGHGALMPLMAQFNEHAKLSMLRNATWTLSNFCRGKPQPQFEQT 240

Query: 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 299
           +PALPALERLIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSV
Sbjct: 241 KPALPALERLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSV 300

Query: 300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 359
           LIPALRTVGNIVTGDD+QTQCIIN+ ALPCLL+LL+ NYKKSIKKEACWTISNITAGN +
Sbjct: 301 LIPALRTVGNIVTGDDIQTQCIINYGALPCLLNLLSHNYKKSIKKEACWTISNITAGNKD 360

Query: 360 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYKFFYVSRTC 415
           QIQ++IEAGII PL+ LL NAEFEIKKEAAWAISNATSGG+++QIK     VS+ C
Sbjct: 361 QIQSVIEAGIIPPLIYLLQNAEFEIKKEAAWAISNATSGGTHDQIK---LLVSQGC 413

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	415
TAIR|locus:505006475	535	IMPA-2 "importin alpha isoform	0.975	0.757	0.801	1.3e-173
TAIR|locus:2083313	532	IMPA-1 "importin alpha isoform	0.975	0.761	0.791	2.1e-171
TAIR|locus:2132238	531	MOS6 "MODIFIER OF SNC1, 6" [Ar	0.992	0.775	0.725	3.2e-159
TAIR|locus:2196140	539	IMPA-6 "importin alpha isoform	0.992	0.764	0.726	1.6e-157
TAIR|locus:2195351	538	IMPA-4 "AT1G09270" [Arabidopsi	0.978	0.754	0.734	3e-156
TAIR|locus:2155929	519	IMPA-5 "importin alpha isoform	0.968	0.774	0.628	4.8e-133
DICTYBASE|DDB_G0272318	516	DDB_G0272318 "putative importi	0.973	0.782	0.610	6.1e-126
TAIR|locus:2078122	528	IMPA-7 "importin alpha isoform	0.944	0.742	0.625	8e-124
UNIPROTKB|G4MZS0	551	MGG_15072 "Importin subunit al	0.951	0.716	0.616	3.3e-118
ASPGD|ASPL0000045550	553	kapA [Emericella nidulans (tax	0.951	0.714	0.602	1.1e-117

TAIR|locus:505006475 IMPA-2 "importin alpha isoform 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1687 (598.9 bits), Expect = 1.3e-173, P = 1.3e-173
 Identities = 331/413 (80%), Positives = 369/413 (89%)

Query:     1 MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQ--- 57
             MSLRPNA+TEVRR++YKVAVDAEEGRRRREDNMVEIRK+KREESL KKRREGLQA+Q   
Sbjct:     1 MSLRPNAKTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLQKKRREGLQANQLPQ 60

Query:    58 ----PLTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQS 113
                 P+  S+ ++ KKLESLPAMV GVWSDDR++QL+ATTQFRKLLSIERSPPI EVI +
Sbjct:    61 FAPSPVPASSTVE-KKLESLPAMVGGVWSDDRSLQLEATTQFRKLLSIERSPPIEEVIDA 119

Query:   114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDV 173
             GVVPRF+EFL+R+D+PQLQFEAAWALTNIASGTSENT+VVI+HGAVPIFV+LL+S +DDV
Sbjct:   120 GVVPRFVEFLTREDYPQLQFEAAWALTNIASGTSENTKVVIEHGAVPIFVQLLASQSDDV 179

Query:   174 REQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ 233
             REQAVWALGNVAGDSP+CRDLVL  GAL+PLL+Q NEHAKLSMLRNATWTLSNFCRGKPQ
Sbjct:   180 REQAVWALGNVAGDSPRCRDLVLGQGALIPLLSQLNEHAKLSMLRNATWTLSNFCRGKPQ 239

Query:   234 PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR 293
             P F+Q RPALPALERLIHS D+EVLTDACWALSYLSDGTNDKIQ+VIEAGV PRLVELL+
Sbjct:   240 PPFDQVRPALPALERLIHSTDEEVLTDACWALSYLSDGTNDKIQSVIEAGVVPRLVELLQ 299

Query:   294 HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 353
             H SPSVLIPALR++GNIVTGDD+QTQC+I+H AL  LL LLT N+KKSIKKEACWTISNI
Sbjct:   300 HQSPSVLIPALRSIGNIVTGDDLQTQCVISHGALLSLLSLLTHNHKKSIKKEACWTISNI 359

Query:   354 TAGNVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY 406
             TAGN +            PLVNLL NAEF+IKKEAAWAISNATSGGS +QIKY
Sbjct:   360 TAGNRDQIQAVCEAGLICPLVNLLQNAEFDIKKEAAWAISNATSGGSPDQIKY 412

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA;ISS

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2083313 IMPA-1 "importin alpha isoform 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1666 (591.5 bits), Expect = 2.1e-171, P = 2.1e-171
 Identities = 323/408 (79%), Positives = 366/408 (89%)

Query:     1 MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQ--P 58
             MSLRPNA+TEVRR++YKVAVDAEEGRRRREDNMVEIRK+KREESL+KKRREG+QA Q  P
Sbjct:     1 MSLRPNAKTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLMKKRREGMQALQGFP 60

Query:    59 LTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPR 118
               ++A++D KKL+SL  MVAGVWSDD  +QL++TTQFRKLLSIERSPPI EVI +GVVPR
Sbjct:    61 SASAASVD-KKLDSLKDMVAGVWSDDPALQLESTTQFRKLLSIERSPPIEEVISAGVVPR 119

Query:   119 FIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAV 178
             F+EFL ++D+P +QFEAAWALTNIASGTS++T+VVIDH AVPIFV+LL+SP+DDVREQAV
Sbjct:   120 FVEFLKKEDYPAIQFEAAWALTNIASGTSDHTKVVIDHNAVPIFVQLLASPSDDVREQAV 179

Query:   179 WALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ 238
             WALGNVAGDSP+CRDLVL  GAL+PLL Q NEHAKLSMLRNATWTLSNFCRGKPQP F+Q
Sbjct:   180 WALGNVAGDSPRCRDLVLGCGALLPLLNQLNEHAKLSMLRNATWTLSNFCRGKPQPHFDQ 239

Query:   239 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS 298
              +PALPALERLIHS+D+EVLTDACWALSYLSDGTNDKIQ VI+AGV P+LVELL H SPS
Sbjct:   240 VKPALPALERLIHSDDEEVLTDACWALSYLSDGTNDKIQTVIQAGVVPKLVELLLHHSPS 299

Query:   299 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 358
             VLIPALRTVGNIVTGDD+QTQC+IN  ALPCL +LLTQN+KKSIKKEACWTISNITAGN 
Sbjct:   300 VLIPALRTVGNIVTGDDIQTQCVINSGALPCLANLLTQNHKKSIKKEACWTISNITAGNK 359

Query:   359 NXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY 406
             +            PLV+LL NAEF+IKKEAAWAISNATSGGS++QIKY
Sbjct:   360 DQIQTVVEANLISPLVSLLQNAEFDIKKEAAWAISNATSGGSHDQIKY 407

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2132238 MOS6 "MODIFIER OF SNC1, 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1551 (551.0 bits), Expect = 3.2e-159, P = 3.2e-159
 Identities = 304/419 (72%), Positives = 351/419 (83%)

Query:     1 MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLT 60
             MSLRP+A+TEVRR++YKVAVDAEEGRRRREDN+VEIRKNKREE+L KKR     A    T
Sbjct:     1 MSLRPSAKTEVRRNRYKVAVDAEEGRRRREDNLVEIRKNKREENLQKKRFTSSMAFGSAT 60

Query:    61 NSAALD----NKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVV 116
                  D    N+  ++LPAMVAG+WS+D N QL+AT   RKLLSIE++PPINEV+QSGVV
Sbjct:    61 GQTEQDLSSANQLKDNLPAMVAGIWSEDSNSQLEATNLLRKLLSIEQNPPINEVVQSGVV 120

Query:   117 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQ 176
             PR ++FLSRDDFP+LQFEAAWALTNIASGTSENT V+I+ GAVPIF++LLSS ++DVREQ
Sbjct:   121 PRVVKFLSRDDFPKLQFEAAWALTNIASGTSENTNVIIESGAVPIFIQLLSSASEDVREQ 180

Query:   177 AVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 236
             AVWALGNVAGDSPKCRDLVLS GA+ PLL+QFNE+ KLSMLRNATWTLSNFCRGKP P F
Sbjct:   181 AVWALGNVAGDSPKCRDLVLSYGAMTPLLSQFNENTKLSMLRNATWTLSNFCRGKPPPAF 240

Query:   237 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS 296
             EQT+PALP LERL+ S D+EVLTDACWALSYLSD +NDKIQAVIEAGV PRL++LL H S
Sbjct:   241 EQTQPALPVLERLVQSMDEEVLTDACWALSYLSDNSNDKIQAVIEAGVVPRLIQLLGHSS 300

Query:   297 PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356
             PSVLIPALRT+GNIVTGDD+QTQ +++ QALPCLL+LL  NYKKSIKKEACWTISNITAG
Sbjct:   301 PSVLIPALRTIGNIVTGDDLQTQMVLDQQALPCLLNLLKNNYKKSIKKEACWTISNITAG 360

Query:   357 NVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYKFFYVSRTC 415
             N +             LV +L +AEFE+KKEAAW ISNATSGG+++QIK   F VS+ C
Sbjct:   361 NADQIQAVIDAGIIQSLVWVLQSAEFEVKKEAAWGISNATSGGTHDQIK---FMVSQGC 416

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0006952 "defense response" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2196140 IMPA-6 "importin alpha isoform 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1535 (545.4 bits), Expect = 1.6e-157, P = 1.6e-157
 Identities = 306/421 (72%), Positives = 357/421 (84%)

Query:     1 MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQ---AHQ 57
             MS +P+A+TEVRR++YKV+VDA+EGRRRREDNMVEIRKNKREE+L KKRREG     A Q
Sbjct:     1 MSYKPSAKTEVRRNRYKVSVDADEGRRRREDNMVEIRKNKREENLQKKRREGFNPSMASQ 60

Query:    58 PLTN-SAALDNK-KLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGV 115
             P  + S++L  + +LE++  M+AGV S+DR++QL+AT  FR+LLSIER+PPINEV+QSGV
Sbjct:    61 PGQDFSSSLPTETRLENIQQMIAGVMSEDRDLQLEATASFRRLLSIERNPPINEVVQSGV 120

Query:   116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVRE 175
             VP  ++FLSRDDF QLQFEAAWALTNIASGTSENTRV+ID GAVP+FV+LLSS +++VRE
Sbjct:   121 VPHIVQFLSRDDFTQLQFEAAWALTNIASGTSENTRVIIDSGAVPLFVKLLSSASEEVRE 180

Query:   176 QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 235
             QAVWALGNVAGDSPKCRD VLS  A+M LLAQF+EH+KLSMLRNATWTLSNFCRGKPQP 
Sbjct:   181 QAVWALGNVAGDSPKCRDHVLSCEAMMSLLAQFHEHSKLSMLRNATWTLSNFCRGKPQPA 240

Query:   236 FEQ-TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH 294
             FEQ T+ ALPALERL+HS D+EVLTDA WALSYLSDGTN+KIQ VI+AGV PRLV+LL H
Sbjct:   241 FEQQTKAALPALERLLHSTDEEVLTDASWALSYLSDGTNEKIQTVIDAGVIPRLVQLLAH 300

Query:   295 PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT 354
             PSPSVLIPALRT+GNIVTGDD+QTQ +I+ QALP LL+LL   YKKSIKKEACWTISNIT
Sbjct:   301 PSPSVLIPALRTIGNIVTGDDIQTQAVISSQALPGLLNLLKNTYKKSIKKEACWTISNIT 360

Query:   355 AGNVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYKFFYVSRT 414
             AGN +            PL+NLL   EFEIKKEA WAISNATSGG+++QIK   F VS+ 
Sbjct:   361 AGNTSQIQEVFQAGIIRPLINLLEIGEFEIKKEAVWAISNATSGGNHDQIK---FLVSQG 417

Query:   415 C 415
             C
Sbjct:   418 C 418

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0007067 "mitosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2195351 IMPA-4 "AT1G09270" [Arabidopsis thaliana (taxid:3702)]

 Score = 1523 (541.2 bits), Expect = 3.0e-156, P = 3.0e-156
 Identities = 304/414 (73%), Positives = 342/414 (82%)

Query:     1 MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLT 60
             MSLRP+ R E+R+  YK  VDA+E RRRREDN+VEIRKNKRE+SLLKKRREG+   Q L 
Sbjct:     1 MSLRPSTRAELRKKIYKTGVDADEARRRREDNLVEIRKNKREDSLLKKRREGMMLQQQLP 60

Query:    61 NSAALDN--------KKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQ 112
               A LD         K+LE +P MV GV+SDD   QL+ATTQFRKLLSIERSPPI+EVI+
Sbjct:    61 LGAGLDGPQTAAAVEKRLEGIPMMVQGVYSDDPQAQLEATTQFRKLLSIERSPPIDEVIK 120

Query:   113 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDD 172
             +GV+PRF+EFL R D PQLQFEAAWALTN+ASGTS++TRVVI+ GAVPIFV+LL+S +DD
Sbjct:   121 AGVIPRFVEFLGRHDHPQLQFEAAWALTNVASGTSDHTRVVIEQGAVPIFVKLLTSASDD 180

Query:   173 VREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 232
             VREQAVWALGNVAGDSP CR+LVL+ GAL PLLAQ NE++KLSMLRNATWTLSNFCRGKP
Sbjct:   181 VREQAVWALGNVAGDSPNCRNLVLNYGALEPLLAQLNENSKLSMLRNATWTLSNFCRGKP 240

Query:   233 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 292
                FEQ +PALP L +LI+ ND+EVLTDACWALSYLSDG NDKIQAVIEAGVCPRLVELL
Sbjct:   241 PTPFEQVKPALPILRQLIYLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELL 300

Query:   293 RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 352
              H SP+VLIPALRTVGNIVTGDD QTQ II    LP L +LLTQN+KKSIKKEACWTISN
Sbjct:   301 GHQSPTVLIPALRTVGNIVTGDDSQTQFIIESGVLPHLYNLLTQNHKKSIKKEACWTISN 360

Query:   353 ITAGNVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY 406
             ITAGN              PLV+LL NAEF+IKKEAAWAISNATSGGS+EQI+Y
Sbjct:   361 ITAGNKLQIEAVVGAGIILPLVHLLQNAEFDIKKEAAWAISNATSGGSHEQIQY 414

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS;RCA

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0030581 "symbiont intracellular protein transport in host" evidence=IPI

GO:0080034 "host response to induction by symbiont of tumor, nodule or growth in host" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2155929 IMPA-5 "importin alpha isoform 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1304 (464.1 bits), Expect = 4.8e-133, P = 4.8e-133
 Identities = 257/409 (62%), Positives = 318/409 (77%)

Query:     1 MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLT 60
             MSLRP+ +TE+RR +YKV+VDAEEGRRRRED +VEIRK+KR E+L+KKRR  ++   P  
Sbjct:     1 MSLRPSTKTEIRRIRYKVSVDAEEGRRRREDFLVEIRKSKRNENLMKKRR--VKVLPP-- 56

Query:    61 NSAALDNKKLESL---PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVP 117
             +   + N   ESL     M+ GV+SDD ++QL+ TT+FR +LS +RSPP + VI+SGVVP
Sbjct:    57 DYKLISNDPFESLLEIANMITGVFSDDPSLQLEYTTRFRVVLSFDRSPPTDNVIKSGVVP 116

Query:   118 RFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQA 177
             RF+EFL +DD P+LQFEAAWALTNIASG SE+T+VVIDHG VP+FV+LL+SP DDVREQA
Sbjct:   117 RFVEFLKKDDNPKLQFEAAWALTNIASGASEHTKVVIDHGVVPLFVQLLASPDDDVREQA 176

Query:   178 VWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE 237
             +W LGNVAGDS +CRD VL++GA +PLL Q N HA LS+LRNATWTLSNF RGKP P F+
Sbjct:   177 IWGLGNVAGDSIQCRDFVLNSGAFIPLLHQLNNHATLSILRNATWTLSNFFRGKPSPPFD 236

Query:   238 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP 297
               +  LP L+RL++S+D++VL DACWALS LSD +N+ IQ+VIEAGV PRLVELL+H SP
Sbjct:   237 LVKHVLPVLKRLVYSDDEQVLIDACWALSNLSDASNENIQSVIEAGVVPRLVELLQHASP 296

Query:   298 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 357
              VL+PALR +GNIV+G+  QT C+IN   LP L DLLTQN+ + I++EACWTISNITAG 
Sbjct:   297 VVLVPALRCIGNIVSGNSQQTHCVINCGVLPVLADLLTQNHMRGIRREACWTISNITAGL 356

Query:   358 VNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY 406
                            LVNL  +AEF+IKKEA WAISNA+ GGS  QIKY
Sbjct:   357 EEQIQSVIDANLIPSLVNLAQHAEFDIKKEAIWAISNASVGGSPNQIKY 405

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0009407 "toxin catabolic process" evidence=RCA

DICTYBASE|DDB_G0272318 DDB_G0272318 "putative importin subunit alpha B" [Dictyostelium discoideum (taxid:44689)]

 Score = 1237 (440.5 bits), Expect = 6.1e-126, P = 6.1e-126
 Identities = 251/411 (61%), Positives = 318/411 (77%)

Query:     7 ARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALD 66
             ++ E R+S+YK ++D++E RR+RE+  + IRKNKREESLLKKR + +    P+   + + 
Sbjct:     4 SKQETRKSQYKKSIDSDESRRKREEASLSIRKNKREESLLKKRTQAVPGSTPVKVDSLI- 62

Query:    67 NKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD 126
             N++LE LP++VA + S++ ++ L +TT FRKLLSIE+SPPI EVI++G+VPR ++FL   
Sbjct:    63 NQRLEQLPSLVAEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIVPRLVKFLYMQ 122

Query:   127 DFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG 186
             DFPQLQFEAAWALTNIASGT E TRVVI++GA+ +FV LLSSP DDVREQAVWALGN+AG
Sbjct:   123 DFPQLQFEAAWALTNIASGTPEQTRVVIENGAIQVFVLLLSSPHDDVREQAVWALGNIAG 182

Query:   187 DSPKCRDLVLSNGALMPLLAQFNEHA--KLSMLRNATWTLSNFCRGKPQPLFEQTRPALP 244
             DS  CRDLVLS+ AL PLL+     A  K+SM+RNATWTLSNFCRGKPQP FE  R +LP
Sbjct:   183 DSHYCRDLVLSHNALPPLLSLLQNPAAIKVSMVRNATWTLSNFCRGKPQPPFEIVRASLP 242

Query:   245 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPAL 304
              L +LI+  D+EVL DACWALSYLSDG+N++IQ VI+A VC ++VELL HP+ +V  PAL
Sbjct:   243 VLAKLIYYQDEEVLIDACWALSYLSDGSNERIQEVIDAKVCRKMVELLGHPTIAVQTPAL 302

Query:   305 RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXX 364
             RT+GNIVTGDD QTQ +++ QAL  LL+LL Q+ K++I+KEACWTISNITAG+ N     
Sbjct:   303 RTIGNIVTGDDNQTQIVLSVQALSHLLNLL-QSPKRAIRKEACWTISNITAGDKNQIQQV 361

Query:   365 XXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYKFFYVSRTC 415
                     LV LL NAEFEI+KEAAWAISNATS G+ +QI    F VS+ C
Sbjct:   362 IDANIIPSLVYLLANAEFEIQKEAAWAISNATSCGTPQQIH---FLVSQGC 409

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TAIR|locus:2078122 IMPA-7 "importin alpha isoform 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 1217 (433.5 bits), Expect = 8.0e-124, P = 8.0e-124
 Identities = 254/406 (62%), Positives = 301/406 (74%)

Query:    11 VRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKKL 70
             VRRS YK  VD   GRRRRED+MVEIRK KREESLLKKRRE L  H P  +S  LD K  
Sbjct:     9 VRRSGYKAVVDGVGGRRRREDDMVEIRKAKREESLLKKRREALP-HSPSADS--LDQK-- 63

Query:    71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIER-SPPINEVIQSGVVPRFIEFLSRDDFP 129
                  +++ +WSD+R++ ++ATTQ R LL  E  +  + EVIQ+G+VPRF+EFL+ DD P
Sbjct:    64 -----LISCIWSDERDLLIEATTQIRTLLCGEMFNVRVEEVIQAGLVPRFVEFLTWDDSP 118

Query:   130 QLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP 189
             QLQFEAAWALTNIASGTSENT VVIDHGAV I VRLL+SP D VREQ VWALGN++GDSP
Sbjct:   119 QLQFEAAWALTNIASGTSENTEVVIDHGAVAILVRLLNSPYDVVREQVVWALGNISGDSP 178

Query:   190 KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERL 249
             +CRD+VL + AL  LL Q N  AKLSML NA WTLSN CRGKPQP F+Q   ALPAL +L
Sbjct:   179 RCRDIVLGHAALPSLLLQLNHGAKLSMLVNAAWTLSNLCRGKPQPPFDQVSAALPALAQL 238

Query:   250 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 309
             I  +D E+L   CWAL YLSDG+N+KIQAVIEA VC RL+ L  H SPSV+ PALRT+GN
Sbjct:   239 IRLDDKELLAYTCWALVYLSDGSNEKIQAVIEANVCARLIGLSIHRSPSVITPALRTIGN 298

Query:   310 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXX 369
             IVTG+D QTQ II+ QALPCL++LL  +Y K+I+KEACWT+SNITAG  +          
Sbjct:   299 IVTGNDSQTQHIIDLQALPCLVNLLRGSYNKTIRKEACWTVSNITAGCQSQIQAVFDADI 358

Query:   370 XXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYKFFYVSRTC 415
                LVNLL N+E ++KKEAAWAI NA +GGS +QI    F V + C
Sbjct:   359 CPALVNLLQNSEGDVKKEAAWAICNAIAGGSYKQI---MFLVKQEC 401

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

UNIPROTKB|G4MZS0 MGG_15072 "Importin subunit alpha" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 1164 (414.8 bits), Expect = 3.3e-118, P = 3.3e-118
 Identities = 254/412 (61%), Positives = 298/412 (72%)

Query:    10 EVRRSKYKV--AVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTN-SAALD 66
             E RR+++K       EE RRRRE+  VEIRK KREE+L K+R  G  A +P  +  AA D
Sbjct:     8 EHRRTQFKAKNTFKPEELRRRREEQQVEIRKAKREENLAKRRGIGTGADRPGASLGAAPD 67

Query:    67 N--------KKL-ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVP 117
             +         +L E LP MV GV+S+  + Q+ ATT+FRKLLS ER+PPI EVI++GVV 
Sbjct:    68 SDDDTAPTESQLNEDLPQMVQGVFSESIDAQIQATTKFRKLLSKERNPPIEEVIKTGVVS 127

Query:   118 RFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQA 177
             RF+EFL R     +QFEAAWALTNIASG++  T+VVI+ GAVPIFV LL SP  DVREQA
Sbjct:   128 RFVEFL-RSPHTLVQFEAAWALTNIASGSATQTQVVIEAGAVPIFVELLGSPEPDVREQA 186

Query:   178 VWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLF 236
             VWALGN+AGDSP+CRD VLS GAL PLL    +  KLSMLRNATWTLSNFCRGK PQP +
Sbjct:   187 VWALGNIAGDSPQCRDYVLSCGALKPLLNLLGDSRKLSMLRNATWTLSNFCRGKTPQPDW 246

Query:   237 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS 296
                 PALP L +L++S DDEVL DACWA+SYLSDG+NDKIQAVIEAG+  RLVELL H S
Sbjct:   247 TTIAPALPVLAKLVYSLDDEVLIDACWAISYLSDGSNDKIQAVIEAGIPRRLVELLMHAS 306

Query:   297 PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356
              SV  PALR+VGNIVTGDD+QTQ IIN  ALPCLL LL  N K  I+KEACWTISNITAG
Sbjct:   307 TSVQTPALRSVGNIVTGDDVQTQVIINCGALPCLLSLLGSN-KDGIRKEACWTISNITAG 365

Query:   357 NVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKY 406
             N              PL++LL N + + +KEA WAISNATSGG    +QI+Y
Sbjct:   366 NSAQIQSVVDANIIPPLIHLLSNGDLKTRKEACWAISNATSGGLQKPDQIRY 417

GO:0005575 "cellular_component" evidence=ND

ASPGD|ASPL0000045550 kapA [Emericella nidulans (taxid:162425)]

 Score = 1159 (413.0 bits), Expect = 1.1e-117, P = 1.1e-117
 Identities = 249/413 (60%), Positives = 299/413 (72%)

Query:    10 EVRRSKYKVAVD--AEEGRRRREDNMVEIRKNKREESLLKKR----REG-------LQAH 56
             E RR++YK       +E RRRRE+  VEIRK KREE+L K+R    R+G       + A 
Sbjct:     8 EHRRTQYKARNQFRPDELRRRREEQQVEIRKQKREENLAKRRGIQTRDGGIGVGGGMAAA 67

Query:    57 QPLTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVV 116
             +    ++A++++    LP MV GV+SD    Q+ ATT+FRKLLS ER+PPI  VI++GVV
Sbjct:    68 ESDDEASAIESELNVELPEMVKGVFSDQIEAQIQATTKFRKLLSKERNPPIERVIETGVV 127

Query:   117 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQ 176
              RF+EFL R     +QFEAAWALTNIASG+++ T+VVI+ GAVPIFV LLSSP  DVREQ
Sbjct:   128 SRFVEFL-RSPHTLVQFEAAWALTNIASGSAQQTQVVIEAGAVPIFVELLSSPEPDVREQ 186

Query:   177 AVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPL 235
             AVWALGN+AGDSP+CRD VL+ GAL PLL   N+  K+SMLRNATWTLSNFCRGK PQP 
Sbjct:   187 AVWALGNIAGDSPQCRDFVLNAGALRPLLTLINDGRKISMLRNATWTLSNFCRGKTPQPD 246

Query:   236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP 295
             +    PALP L +LI+  DDEVL DACWA+SYLSDG N+KIQAVIEAG+  RLVELL H 
Sbjct:   247 WNTIAPALPVLAKLIYMLDDEVLIDACWAISYLSDGPNEKIQAVIEAGIPRRLVELLMHA 306

Query:   296 SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355
             S SV  PALR+VGNIVTGDD+QTQ IIN  ALP LL LL+   K  I+KEACWTISNITA
Sbjct:   307 STSVQTPALRSVGNIVTGDDVQTQVIINCGALPALLSLLSST-KDGIRKEACWTISNITA 365

Query:   356 GNVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKY 406
             GN +            PLV+LL N +F+ +KEA WAISNATSGG    +QI+Y
Sbjct:   366 GNSSQIQSVIDAGIIPPLVHLLANGDFKTRKEACWAISNATSGGLQKPDQIRY 418

GO:0006606 "protein import into nucleus" evidence=IMP

GO:0005635 "nuclear envelope" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0030261 "chromosome condensation" evidence=IEA

GO:0033554 "cellular response to stress" evidence=IEA

GO:0000087 "M phase of mitotic cell cycle" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O35345	IMA7_MOUSE	No assigned EC number	0.5811	0.8963	0.6940	yes	no
O14063	IMA1_SCHPO	No assigned EC number	0.5637	0.9493	0.7269	yes	no
Q5RBV0	IMA7_PONAB	No assigned EC number	0.5785	0.8963	0.6940	yes	no
Q02821	IMA1_YEAST	No assigned EC number	0.5422	0.9349	0.7158	yes	no
Q76P29	IMAB_DICDI	No assigned EC number	0.6301	0.9734	0.7829	yes	no
O22478	IMA_SOLLC	No assigned EC number	0.8249	0.9927	0.7817	N/A	no
O60684	IMA7_HUMAN	No assigned EC number	0.5785	0.8963	0.6940	yes	no
Q0V7M0	IMA7_BOVIN	No assigned EC number	0.5811	0.8963	0.6940	yes	no
Q71VM4	IMA1A_ORYSJ	No assigned EC number	0.8581	0.9927	0.7832	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	OsI_01208	Importin subunit alpha-1a; Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope (526 aa)
		(Oryza sativa Indica)
Predicted Functional Partners:
	OsI_01059	Os01g0235400 (983 aa)				•	•		•		0.453

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	415
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	1e-173
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	4e-33
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	5e-32
pfam01749	97	pfam01749, IBB, Importin beta binding domain	1e-30
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	5e-21
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-14
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	7e-10
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	9e-10
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	2e-09
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	4e-08
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	6e-08
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	1e-07
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	2e-07
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	3e-07
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	9e-07
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	1e-06
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	3e-06
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	2e-05
pfam13646	88	pfam13646, HEAT_2, HEAT repeats	2e-05
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	3e-05
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	7e-05
COG5116	926	COG5116, RPN2, 26S proteasome regulatory complex c	6e-04
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	7e-04
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	0.002
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	0.003
pfam13646	88	pfam13646, HEAT_2, HEAT repeats	0.004
COG1413	335	COG1413, COG1413, FOG: HEAT repeat [Energy product	0.004

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score =  494 bits (1274), Expect = e-173
 Identities = 233/403 (57%), Positives = 286/403 (70%), Gaps = 7/403 (1%)

Query: 10  EVRRSKY--KVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALDN 67
           E RR  +  K    A+E RRRRE+  VE+RK KREE L K+R     + +  ++   ++ 
Sbjct: 8   EARRYNFKGKGRFSADELRRRREEQQVELRKQKREELLNKRRNLADVSEEAESSFIPMEQ 67

Query: 68  KKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD 127
           +    LP +   ++SDD   QL A  +FRKLLS E SPPI  VI +GVVPRF+EF+    
Sbjct: 68  QFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQ 127

Query: 128 FPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 187
              LQFEAAWALTNIASGT++ T+VV+D GAVP+F++LLSS  DDVREQAVWALGN+AGD
Sbjct: 128 RDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGD 187

Query: 188 SPKCRDLVLSNGALMPLLAQFNEHA-KLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPA 245
           S  CRD VL  GAL PLL      A  +SMLRNATWTLSN CRGK P P +     ALP 
Sbjct: 188 SEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPI 247

Query: 246 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 305
           L +LI+S D EVL DACWA+SYLSDG N+KIQAV++ G+  RLVELL H S  +  PALR
Sbjct: 248 LAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALR 307

Query: 306 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII 365
           +VGNIVTG D QTQ IIN  AL     LL+ + K++I+KEACWTISNITAGN  QIQA+I
Sbjct: 308 SVGNIVTGSDDQTQVIINCGALKAFRSLLS-SPKENIRKEACWTISNITAGNTEQIQAVI 366

Query: 366 EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKY 406
           +A +I PL++LL +AE++IKKEA WAISNATSGG N  + I+Y
Sbjct: 367 DANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRY 409

Length = 526

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score =  120 bits (302), Expect = 4e-33
 Identities = 43/121 (35%), Positives = 70/121 (57%), Gaps = 2/121 (1%)

Query: 109 EVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS 168
            VIQ+G +P  +  LS  D   +Q EAAWAL+N+++G ++N + V++ G +P  V+LL S
Sbjct: 2   AVIQAGGLPALVSLLSSSDEN-VQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60

Query: 169 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 228
             ++V + A+WAL N+A      + +VL  G + P L    + +   + +NAT  LSN  
Sbjct: 61  EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGV-PKLVNLLDSSNEDIQKNATGALSNLA 119

Query: 229 R 229
            
Sbjct: 120 S 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score =  117 bits (295), Expect = 5e-32
 Identities = 44/114 (38%), Positives = 66/114 (57%), Gaps = 1/114 (0%)

Query: 242 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 301
            LPAL  L+ S+D+ V  +A WALS LS G ND IQAV+EAG  P LV+LL+     V+ 
Sbjct: 8   GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVK 67

Query: 302 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355
            AL  + N+  G +     ++    +P L++LL  +  + I+K A   +SN+ +
Sbjct: 68  AALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSS-NEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|201951 pfam01749, IBB, Importin beta binding domain

 Score =  112 bits (283), Expect = 1e-30
 Identities = 42/97 (43%), Positives = 51/97 (52%), Gaps = 6/97 (6%)

Query: 4  RPNARTEVRRSKYKV-AVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLT-- 60
              + E RR  YK    DAEE RRRRE+  VE+RKNKREE LLK+R  GL         
Sbjct: 1  ESPNKPEYRRKSYKNKGRDAEEMRRRREEVGVELRKNKREEQLLKRRNVGLPPEDGAEPE 60

Query: 61 ---NSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQ 94
             + ++  ++    LP MV GV SDD   QL AT  
Sbjct: 61 SELDGSSDADQLSLELPVMVQGVNSDDPENQLSATQA 97

This family consists of the importin alpha (karyopherin alpha), importin beta (karyopherin beta) binding domain. The domain mediates formation of the importin alpha beta complex; required for classical NLS import of proteins into the nucleus, through the nuclear pore complex and across the nuclear envelope. Also in the alignment is the NLS of importin alpha which overlaps with the IBB domain. Length = 97

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 87.4 bits (217), Expect = 5e-21
 Identities = 39/113 (34%), Positives = 65/113 (57%), Gaps = 2/113 (1%)

Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
           LPA+V+ + S D N+Q +A      L S   +  I  V+++G +P  ++ L  +D  ++ 
Sbjct: 9   LPALVSLLSSSDENVQREAAWALSNL-SAGNNDNIQAVVEAGGLPALVQLLKSED-EEVV 66

Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA 185
             A WAL N+A+G  +N  +V++ G VP  V LL S  +D+++ A  AL N+A
Sbjct: 67  KAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 68.9 bits (169), Expect = 2e-14
 Identities = 31/87 (35%), Positives = 55/87 (63%), Gaps = 1/87 (1%)

Query: 321 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA 380
           +I    LP L+ LL+ +  +++++EA W +SN++AGN + IQA++EAG +  LV LL + 
Sbjct: 3   VIQAGGLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61

Query: 381 EFEIKKEAAWAISNATSGGSNEQIKYK 407
           + E+ K A WA+ N  +G  + ++   
Sbjct: 62  DEEVVKAALWALRNLAAGPEDNKLIVL 88

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 53.6 bits (130), Expect = 7e-10
 Identities = 22/40 (55%), Positives = 31/40 (77%)

Query: 146 TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA 185
           + EN + VI+ GAVP  V+LLSSP ++V+E+A WAL N+A
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 53.2 bits (129), Expect = 9e-10
 Identities = 16/40 (40%), Positives = 25/40 (62%)

Query: 146 TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA 185
             EN + V+D G +P  V LL S  ++V ++A WAL N++
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 52.5 bits (127), Expect = 2e-09
 Identities = 19/41 (46%), Positives = 29/41 (70%)

Query: 357 NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397
           +    QA+IEAG + PLV LL + + E+++EAAWA+SN  +
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 48.6 bits (117), Expect = 4e-08
 Identities = 16/41 (39%), Positives = 21/41 (51%)

Query: 272 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 312
           + +  QAVIEAG  P LV+LL  P   V   A   + N+  
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 48.6 bits (116), Expect = 6e-08
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV 184
            +++  AA AL  +A G  E  R  +    +P  + LL    D+VRE A WALG +
Sbjct: 1   WEVREAAALALGALAGGGPELLRPAVPE-LLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 47.4 bits (114), Expect = 1e-07
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 272 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311
            ++  QAV++AG  P LVELL+     V+  A   + N+ 
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 47.0 bits (113), Expect = 2e-07
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 103 RSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 144
                  V+ +G +P  +E L  +D  ++  EAAWAL+N++S
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSED-EEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 46.3 bits (111), Expect = 3e-07
 Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)

Query: 104 SPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 144
                 VI++G VP  ++ LS  D  ++Q EAAWAL+N+A+
Sbjct: 2   PENKQAVIEAGAVPPLVQLLSSPD-EEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 44.7 bits (107), Expect = 9e-07
 Identities = 18/38 (47%), Positives = 27/38 (71%)

Query: 360 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397
             QA+++AG +  LV LL + + E+ KEAAWA+SN +S
Sbjct: 4   NKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 44.4 bits (106), Expect = 1e-06
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 314 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355
                Q +I   A+P L+ LL+    + +++EA W +SN+ A
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSP-DEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 43.2 bits (103), Expect = 3e-06
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 314 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355
           DD   Q +++   LP L++LL    ++ + KEA W +SN+++
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEE-VVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 41.3 bits (98), Expect = 2e-05
 Identities = 14/29 (48%), Positives = 20/29 (68%)

Query: 242 ALPALERLIHSNDDEVLTDACWALSYLSD 270
           A+P L +L+ S D+EV  +A WALS L+ 
Sbjct: 13  AVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 11/73 (15%)

Query: 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVRE 175
           +   +E L  D  P+++  AA AL  +            D  A+P  + LL  P  +VR 
Sbjct: 1   LEALLEALLSDPDPEVRAAAARALGELG-----------DPEALPALLELLKDPDPEVRR 49

Query: 176 QAVWALGNVAGDS 188
            A  ALG +    
Sbjct: 50  AAAEALGKLGDPE 62

This family includes multiple HEAT repeats. Length = 88

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 18/45 (40%), Positives = 35/45 (77%), Gaps = 1/45 (2%)

Query: 362 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY 406
           +A+I+AG +  LV+LL +++  +++EAAWA+SN ++ G+N+ I+ 
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSA-GNNDNIQA 44

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 39.7 bits (94), Expect = 7e-05
 Identities = 16/29 (55%), Positives = 20/29 (68%)

Query: 242 ALPALERLIHSNDDEVLTDACWALSYLSD 270
            LPAL  L+ S D+EV+ +A WALS LS 
Sbjct: 13  GLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|227446 COG5116, RPN2, 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

 Score = 41.9 bits (98), Expect = 6e-04
 Identities = 41/158 (25%), Positives = 57/158 (36%), Gaps = 21/158 (13%)

Query: 119 FIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAV 178
           +I  L  D    L++   ++L     GT  N  VV     +   V   S   DDVR  AV
Sbjct: 520 YINELLYDKDSILRYNGVFSLALAYVGTG-NLGVVST--LLHYAV---SDGNDDVRRAAV 573

Query: 179 WALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ 238
            ALG V      C D  L  G +  L    N H +          L   C G        
Sbjct: 574 IALGFVC-----CDDRDLLVGTVELLSESHNFHVRAG----VAVALGIACAGT------G 618

Query: 239 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKI 276
            + A   LE L++  +D V   A  A+  +    N ++
Sbjct: 619 DKVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPEL 656

Length = 926

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 36.7 bits (86), Expect = 7e-04
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 188 SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229
           SP+ +  V+  GA+ P L Q        +   A W LSN   
Sbjct: 1   SPENKQAVIEAGAV-PPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 35.9 bits (83), Expect = 0.002
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 173 VREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 227
           VRE A  ALG +AG  P    L  +   L+P L    +     +   A W L   
Sbjct: 3   VREAAALALGALAGGGP--ELLRPAVPELLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 35.5 bits (82), Expect = 0.003
 Identities = 18/51 (35%), Positives = 22/51 (43%)

Query: 218 RNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL 268
             A   L     G P+ L       LPAL  L+  +DDEV   A WAL  +
Sbjct: 5   EAAALALGALAGGGPELLRPAVPELLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats

 Score = 36.2 bits (84), Expect = 0.004
 Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 22/108 (20%)

Query: 244 PALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPA 303
             LE L+   D EV   A  AL  L D               P L+ELL+ P P V   A
Sbjct: 3   ALLEALLSDPDPEVRAAAARALGELGD-----------PEALPALLELLKDPDPEVRRAA 51

Query: 304 LRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 351
              +G +  GD          +ALP LL+LL  +    ++  A   ++
Sbjct: 52  AEALGKL--GDP---------EALPALLELLQDDDDAVVRAAAASALA 88

This family includes multiple HEAT repeats. Length = 88

>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion]

 Score = 38.7 bits (90), Expect = 0.004
 Identities = 53/219 (24%), Positives = 74/219 (33%), Gaps = 45/219 (20%)

Query: 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVR 174
                ++ L  +D   ++  AA AL  + S             AVP+   LLS     VR
Sbjct: 44  AADELLKLLEDEDLL-VRLSAAVALGELGSEE-----------AVPLLRELLSDEDPRVR 91

Query: 175 EQAVWALGNVAGDSPKCRDLV--LSN--------------------GALMPLLAQFNEHA 212
           + A  ALG + GD      LV  L N                     AL PLL    +  
Sbjct: 92  DAAADALGEL-GDPEAVPPLVELLENDENEGVRAAAARALGKLGDERALDPLLEALQDED 150

Query: 213 KLSMLRNATWTLSNFCRGKPQPLFE-QTRPALPALERLIHSNDDEVLTDACWALSYLSDG 271
             S        L +      + L E     A+P L  L+   D +V      A S L   
Sbjct: 151 SGSAAAALDAALLDVRAAAAEALGELGDPEAIPLLIELLEDEDADVR---RAAASALGQL 207

Query: 272 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 310
            ++ ++A         LV+ L   S  V   AL  +G I
Sbjct: 208 GSENVEAA------DLLVKALSDESLEVRKAALLALGEI 240

Length = 335

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	415
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.96
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.96
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.91
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.88
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.81
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.77
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.75
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.75
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.74
PRK09687	280	putative lyase; Provisional	99.73
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.7
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.7
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.69
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.68
PRK09687	280	putative lyase; Provisional	99.66
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.65
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.64
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.63
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.62
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.61
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.61
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.6
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.58
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.58
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.57
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.53
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.52
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.51
PF01749	97	IBB: Importin beta binding domain; InterPro: IPR00	99.48
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.47
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.43
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.43
PTZ00429	746	beta-adaptin; Provisional	99.41
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.41
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.4
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.37
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.36
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	99.34
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.31
PTZ00429	746	beta-adaptin; Provisional	99.31
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.3
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.22
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.18
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.16
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.14
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.12
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	99.1
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	99.09
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.08
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.06
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.99
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.92
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.91
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.88
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.87
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.86
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.84
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.82
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.79
COG5369	743	Uncharacterized conserved protein [Function unknow	98.79
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.78
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.78
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.78
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.71
TIGR02270	410	conserved hypothetical protein. Members are found	98.7
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.66
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.66
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.64
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.64
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.62
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.61
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.6
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.59
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.58
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.58
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.58
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.55
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.54
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.54
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.54
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.49
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	98.45
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	98.45
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.44
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.44
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.42
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.42
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.41
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.39
TIGR02270	410	conserved hypothetical protein. Members are found	98.38
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.36
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.3
KOG2259	823	consensus Uncharacterized conserved protein [Funct	98.29
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.29
PF05536	543	Neurochondrin: Neurochondrin	98.29
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.25
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.24
COG5369	743	Uncharacterized conserved protein [Function unknow	98.22
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.21
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.19
PF05536	543	Neurochondrin: Neurochondrin	98.18
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	98.17
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	98.17
KOG2062	929	consensus 26S proteasome regulatory complex, subun	98.17
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.17
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.16
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.13
KOG2259	823	consensus Uncharacterized conserved protein [Funct	98.13
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.12
KOG0567	289	consensus HEAT repeat-containing protein [General	98.09
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	98.08
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	98.05
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	98.04
KOG2734	536	consensus Uncharacterized conserved protein [Funct	98.02
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	98.01
KOG2734	536	consensus Uncharacterized conserved protein [Funct	98.0
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.99
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	97.98
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	97.94
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.93
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.91
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.88
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	97.88
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.82
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.81
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	97.79
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	97.77
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.76
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.74
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	97.74
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	97.72
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	97.7
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.64
PF05004	309	IFRD: Interferon-related developmental regulator (	97.62
COG5116	926	RPN2 26S proteasome regulatory complex component [	97.59
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	97.58
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	97.57
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	97.54
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.53
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	97.53
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	97.51
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	97.5
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	97.49
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.46
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	97.44
KOG0567	289	consensus HEAT repeat-containing protein [General	97.43
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	97.39
KOG0414	1251	consensus Chromosome condensation complex Condensi	97.37
PF05004	309	IFRD: Interferon-related developmental regulator (	97.37
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	97.34
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.33
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.28
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.27
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.27
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	97.26
KOG4653	982	consensus Uncharacterized conserved protein [Funct	97.23
KOG2062	929	consensus 26S proteasome regulatory complex, subun	97.17
KOG4653	982	consensus Uncharacterized conserved protein [Funct	97.17
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.15
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	97.15
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.11
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.09
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.97
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	96.92
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	96.91
KOG0414	1251	consensus Chromosome condensation complex Condensi	96.91
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	96.9
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.87
KOG2956	516	consensus CLIP-associating protein [General functi	96.87
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	96.86
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.84
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.81
COG5656	970	SXM1 Importin, protein involved in nuclear import	96.75
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	96.7
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	96.7
KOG3036	293	consensus Protein involved in cell differentiation	96.69
PF08045	257	CDC14: Cell division control protein 14, SIN compo	96.57
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	96.51
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	96.5
PRK14707	2710	hypothetical protein; Provisional	96.48
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	96.46
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	96.45
KOG2032	533	consensus Uncharacterized conserved protein [Funct	96.44
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	96.37
KOG2956	516	consensus CLIP-associating protein [General functi	96.36
PRK14707	2710	hypothetical protein; Provisional	96.35
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	96.34
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.3
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	96.18
PF08045	257	CDC14: Cell division control protein 14, SIN compo	96.17
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	96.15
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	96.13
KOG2137	700	consensus Protein kinase [Signal transduction mech	96.11
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	96.11
COG5098	1128	Chromosome condensation complex Condensin, subunit	96.09
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	96.07
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	96.07
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	96.0
KOG2025	892	consensus Chromosome condensation complex Condensi	95.97
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	95.93
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	95.92
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	95.84
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	95.84
KOG1243	690	consensus Protein kinase [General function predict	95.83
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	95.83
KOG1243	690	consensus Protein kinase [General function predict	95.81
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	95.79
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	95.78
PF07814	361	WAPL: Wings apart-like protein regulation of heter	95.74
KOG3036	293	consensus Protein involved in cell differentiation	95.72
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	95.71
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	95.7
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	95.48
COG5116	926	RPN2 26S proteasome regulatory complex component [	95.44
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	95.28
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	95.27
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	95.16
KOG2032	533	consensus Uncharacterized conserved protein [Funct	95.03
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	94.74
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	94.7
KOG2025	892	consensus Chromosome condensation complex Condensi	94.68
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	94.63
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	94.63
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	94.54
KOG2933	334	consensus Uncharacterized conserved protein [Funct	94.5
COG5098	1128	Chromosome condensation complex Condensin, subunit	94.39
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	94.36
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	94.27
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	94.19
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	94.11
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	94.06
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	94.04
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	93.99
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	93.97
KOG2137	700	consensus Protein kinase [Signal transduction mech	93.96
COG5656	970	SXM1 Importin, protein involved in nuclear import	93.96
KOG2933	334	consensus Uncharacterized conserved protein [Funct	93.91
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	93.83
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	93.82
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	93.79
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	93.75
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	93.71
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	93.69
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	93.64
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	93.62
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	93.39
KOG2005	878	consensus 26S proteasome regulatory complex, subun	93.37
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	93.37
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	92.96
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	92.62
PF07814	361	WAPL: Wings apart-like protein regulation of heter	92.47
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	92.43
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	92.28
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	92.23
PF04388	668	Hamartin: Hamartin protein; InterPro: IPR007483 Th	92.2
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	92.14
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	91.89
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	91.52
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	91.43
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	91.4
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	91.1
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	90.8
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	90.61
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	90.23
COG5101	1053	CRM1 Importin beta-related nuclear transport recep	89.95
KOG0413	1529	consensus Uncharacterized conserved protein relate	89.7
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	89.19
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	89.06
PF06685	249	DUF1186: Protein of unknown function (DUF1186); In	88.98
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	88.96
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	88.91
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	88.86
PF06685	249	DUF1186: Protein of unknown function (DUF1186); In	88.33
PF12726	727	SEN1_N: SEN1 N terminal; InterPro: IPR024481 The y	88.31
PF11538	40	Snurportin1: Snurportin1; InterPro: IPR024721 Snur	88.19
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	87.98
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	87.81
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	87.57
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	87.49
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	87.12
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	86.91
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	86.55
KOG1410	1082	consensus Nuclear transport receptor RanBP16 (impo	86.34
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	85.81
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	85.77
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	85.75
cd03561	133	VHS VHS domain family; The VHS domain is present i	85.63
cd03561	133	VHS VHS domain family; The VHS domain is present i	85.35
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	84.94
KOG4464	532	consensus Signaling protein RIC-8/synembryn (regul	84.85
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	84.28
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	84.27
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	84.02
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	83.8
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	82.89
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	82.37
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	81.49
PF04869	312	Uso1_p115_head: Uso1 / p115 like vesicle tethering	81.36
PF11791	154	Aconitase_B_N: Aconitate B N-terminal domain; Inte	80.91
KOG2149	393	consensus Uncharacterized conserved protein [Funct	80.47
KOG0392	1549	consensus SNF2 family DNA-dependent ATPase domain-	80.34
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	80.18
KOG4464	532	consensus Signaling protein RIC-8/synembryn (regul	80.14

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=1.3e-76  Score=499.05  Aligned_cols=404  Identities=58%  Similarity=0.882  Sum_probs=373.8

Q ss_pred             ccHHHhhhccC--CCCchHHHHhHHHHHHHHHHHhhhHHHHhhhhccccCCCCCCchhhhhhhhhccHHHHHHhhcCCCH
Q 014945            8 RTEVRRSKYKV--AVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKKLESLPAMVAGVWSDDR   85 (415)
Q Consensus         8 ~~~~~~~~~k~--~~~~~~~r~~r~~~~~~lRk~~r~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~   85 (415)
                      .++.|+..||+  .++++|+||+|++++++|||+||+|.+.||||.....+....+.....++....+|.+...|.|+|-
T Consensus         6 ~p~~Rr~~fk~Kg~f~adelRr~ReeQQvElRkqKreE~LnKrRNl~dv~e~a~ss~i~meqq~~~elp~lt~~l~SdDi   85 (526)
T COG5064           6 VPEARRYNFKGKGRFSADELRRRREEQQVELRKQKREELLNKRRNLADVSEEAESSFIPMEQQFYSELPQLTQQLFSDDI   85 (526)
T ss_pred             chHHHHhcccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhhccCchhHHhhhhhHHHHHHHhhhHH
Confidence            67889999998  4779999999999999999999999999999973322221111123334444678999999999999


Q ss_pred             HHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHh
Q 014945           86 NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRL  165 (415)
Q Consensus        86 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l  165 (415)
                      +.+..|+..+++++|.+.+||++.+++.|++|.|++++.+......+++|+|+|+|+++++..++..+++.|++|.++++
T Consensus        86 e~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiql  165 (526)
T COG5064          86 EQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQL  165 (526)
T ss_pred             HHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHH
Confidence            99999999999999999999999999999999999999654437889999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccch-hHhHHHHHHHHHHHhhhCC-CCCchhhhhchH
Q 014945          166 LSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA-KLSMLRNATWTLSNFCRGK-PQPLFEQTRPAL  243 (415)
Q Consensus       166 l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~-~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l  243 (415)
                      |.+++..++++++|+|||++++++.+|+.+++.|++++++.++..+. +..+.+++.|+|+|||+++ |.+....+...+
T Consensus       166 L~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqal  245 (526)
T COG5064         166 LSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQAL  245 (526)
T ss_pred             HcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHH
Confidence            99999999999999999999999999999999999999999995443 6789999999999999998 888899999999


Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHH
Q 014945          244 PALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN  323 (415)
Q Consensus       244 ~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~  323 (415)
                      |.|.+++.+.|+++..+|||+++++++++.+.++.+++.|+.++|+++|.+++..++.+|++.+||+++|++.+++.+++
T Consensus       246 piL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~  325 (526)
T COG5064         246 PILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIIN  325 (526)
T ss_pred             HHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehhee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCC--CH
Q 014945          324 HQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG--SN  401 (415)
Q Consensus       324 ~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~--~~  401 (415)
                      .|+++.+..+|+++ ...+|++|||+++||++|+.++++.+++.+++|.|+.+|.+.+.+++++||||+.|...+|  -+
T Consensus       326 ~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~P  404 (526)
T COG5064         326 CGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRP  404 (526)
T ss_pred             cccHHHHHHHhcCh-hhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCc
Confidence            99999999999999 8899999999999999999999999999999999999999999999999999999999987  48


Q ss_pred             HHHHHHHHHhhCCC
Q 014945          402 EQIKYKFFYVSRTC  415 (415)
Q Consensus       402 ~~~~~l~~~~~~g~  415 (415)
                      ++++||   +++|+
T Consensus       405 D~iryL---v~qG~  415 (526)
T COG5064         405 DIIRYL---VSQGF  415 (526)
T ss_pred             hHHHHH---HHccc
Confidence            999999   99996

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.3e-73  Score=514.30  Aligned_cols=401  Identities=67%  Similarity=1.010  Sum_probs=369.5

Q ss_pred             HHHhhhccC-CCCchHHHHhHHHHHHHHHHHhhhHHHHhhhhccccCCCCCCchhhhhhhhhccHHHHHHhhcCCCHHHH
Q 014945           10 EVRRSKYKV-AVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKKLESLPAMVAGVWSDDRNIQ   88 (415)
Q Consensus        10 ~~~~~~~k~-~~~~~~~r~~r~~~~~~lRk~~r~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~   88 (415)
                      ..|.++||+ +++++|+||||++..+|+||+||+|.++|||+........+.  ...........+..+..+.|+++..+
T Consensus         6 ~~~~~~~k~~~~~~~e~Rrrr~e~~veiRk~kree~l~k~R~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~S~~~~~q   83 (514)
T KOG0166|consen    6 NNRRRRYKNKGVDAEEMRRRREEQVVEIRKNKREESLLKRRNDEEELMLDEL--LSDSQSQASNLELMLAALYSDDPQQQ   83 (514)
T ss_pred             HHHHHHHhhccccHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhhhcccccc--cchhHHHhhhhHHHHHHHhCCCHHHH
Confidence            456666666 699999999999999999999999999999993222221110  11111122346889999999999999


Q ss_pred             HHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCC
Q 014945           89 LDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS  168 (415)
Q Consensus        89 ~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~  168 (415)
                      ..+...++++++.+.+++++.++..|++|.|+++|...+++.++.+|+|+|+||++++.+.+..+++.|++|.++.++.+
T Consensus        84 ~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s  163 (514)
T KOG0166|consen   84 LTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSS  163 (514)
T ss_pred             HHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcC
Confidence            99999999999999899999999999999999999876669999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC-CCCchhhhhchHHHHH
Q 014945          169 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALE  247 (415)
Q Consensus       169 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~l~  247 (415)
                      ++..++++|+|+|+|++++++.+|+.++..|++++|+.++..+....+.++++|+|+|||+++ |.+.+..+..++|.|.
T Consensus       164 ~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~  243 (514)
T KOG0166|consen  164 PSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALL  243 (514)
T ss_pred             CcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999966666689999999999999999 8899999999999999


Q ss_pred             HhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCCh
Q 014945          248 RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQAL  327 (415)
Q Consensus       248 ~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l  327 (415)
                      .++++.|++|..+|||+++||+++..+.++.+++.|++++|+.+|.+.++.++.+|++++||+++|++.+++.+++.|++
T Consensus       244 ~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L  323 (514)
T KOG0166|consen  244 RLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGAL  323 (514)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014945          328 PCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYK  407 (415)
Q Consensus       328 ~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l  407 (415)
                      |.|..++...+...+|++|||+++||++|++++++.+++.|++|.|+.+|+.+++++|++|+||++|++.+|+++|+.||
T Consensus       324 ~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yL  403 (514)
T KOG0166|consen  324 PVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYL  403 (514)
T ss_pred             HHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHH
Confidence            99999999554778999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCC
Q 014945          408 FFYVSRTC  415 (415)
Q Consensus       408 ~~~~~~g~  415 (415)
                         +++||
T Consensus       404 ---v~~gi  408 (514)
T KOG0166|consen  404 ---VEQGI  408 (514)
T ss_pred             ---HHcCC
Confidence               99997

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1e-45  Score=336.07  Aligned_cols=326  Identities=29%  Similarity=0.462  Sum_probs=297.6

Q ss_pred             ccHHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchh
Q 014945           71 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  149 (415)
Q Consensus        71 ~~i~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  149 (415)
                      |.+|.+++.|.. +++.+++.|+|+|.+++++. .+..+.+++.|.+|.|++++.+++ ..++.+|+|+|+|++.+++.+
T Consensus       109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt-se~T~~vv~agavp~fi~Ll~s~~-~~v~eQavWALgNIagds~~~  186 (514)
T KOG0166|consen  109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGT-SEQTKVVVDAGAVPIFIQLLSSPS-ADVREQAVWALGNIAGDSPDC  186 (514)
T ss_pred             CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCc-hhhccccccCCchHHHHHHhcCCc-HHHHHHHHHHHhccccCChHH
Confidence            789999999985 56999999999999999987 888889999999999999999999 999999999999999999999


Q ss_pred             hHHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhh
Q 014945          150 TRVVIDHGAVPIFVRLLSSPTD-DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  228 (415)
Q Consensus       150 ~~~~~~~g~i~~L~~ll~~~~~-~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~  228 (415)
                      ++.+++.|+++.|+.++..++. .+..+++|+|.|||.+....-..-.-..+++.|..++ ++.|+.+...++|++++|+
T Consensus       187 Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll-~~~D~~Vl~Da~WAlsyLs  265 (514)
T KOG0166|consen  187 RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLL-HSTDEEVLTDACWALSYLT  265 (514)
T ss_pred             HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHh
Confidence            9999999999999999988665 7889999999999976521122222234888999999 8999999999999999999


Q ss_pred             hCC-CCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcC-CCChhhHHHHHHH
Q 014945          229 RGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRT  306 (415)
Q Consensus       229 ~~~-~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~  306 (415)
                      .+. .........|++|.|+++|.++++.++.+|+++++|++.+++.+.+.+++.|+++.|..+|. ++...++..|||+
T Consensus       266 dg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~  345 (514)
T KOG0166|consen  266 DGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWT  345 (514)
T ss_pred             cCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHH
Confidence            886 33445555899999999999999999999999999999999999999999999999999998 6677799999999


Q ss_pred             HHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHhccCCHHHH
Q 014945          307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIK  385 (415)
Q Consensus       307 l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~  385 (415)
                      ++||+.|+.++++.+++.|++|.|+.+|+++ +.++|++|+|+++|++. |+++++.++++.|+++.|+++|.-.|.++.
T Consensus       346 iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii  424 (514)
T KOG0166|consen  346 ISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKII  424 (514)
T ss_pred             HHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHH
Confidence            9999999999999999999999999999999 99999999999999998 799999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCC
Q 014945          386 KEAAWAISNATSGGS  400 (415)
Q Consensus       386 ~~a~~aL~nl~~~~~  400 (415)
                      ..++.+|.|+...+.
T Consensus       425 ~v~Ld~l~nil~~~e  439 (514)
T KOG0166|consen  425 LVALDGLENILKVGE  439 (514)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999986653

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=3.1e-45  Score=309.40  Aligned_cols=331  Identities=27%  Similarity=0.387  Sum_probs=295.2

Q ss_pred             ccHHHHHHhhc-CCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchh
Q 014945           71 ESLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  149 (415)
Q Consensus        71 ~~i~~l~~~l~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  149 (415)
                      |.+|.+++++. .+..-.++.|+|+|.+++|+. ....+.+++.|.+|.|+++|.+++ .+++.+++|+|+|++.+++.+
T Consensus       114 GvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt-t~QTkvVvd~~AVPlfiqlL~s~~-~~V~eQavWALGNiAGDS~~~  191 (526)
T COG5064         114 GVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT-TQQTKVVVDAGAVPLFIQLLSSTE-DDVREQAVWALGNIAGDSEGC  191 (526)
T ss_pred             cccHHHHHHHHhcchhHHHHHHHHHHhhhccCc-ccceEEEEeCCchHHHHHHHcCch-HHHHHHHHHHhccccCCchhH
Confidence            67899999995 556677899999999999987 777788999999999999999998 899999999999999999999


Q ss_pred             hHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHh
Q 014945          150 TRVVIDHGAVPIFVRLLSSP--TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF  227 (415)
Q Consensus       150 ~~~~~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l  227 (415)
                      ++.+...|++++++.++.+.  +..+...+.|+|.|+|.+....-+.-.-...++.|..++ .+.++++...|+|++++|
T Consensus       192 RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLi-ys~D~evlvDA~WAiSYl  270 (526)
T COG5064         192 RDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLI-YSRDPEVLVDACWAISYL  270 (526)
T ss_pred             HHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHh
Confidence            99999999999999998774  458899999999999965321112222223788888888 888999999999999999


Q ss_pred             hhCCCCC-chhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHH
Q 014945          228 CRGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT  306 (415)
Q Consensus       228 ~~~~~~~-~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~  306 (415)
                      +.++... ......++.+.|+++|.+++..++.++++.++|+..+++.+.+.+++.|+++.+..+|+++...++..|||+
T Consensus       271 sDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWT  350 (526)
T COG5064         271 SDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWT  350 (526)
T ss_pred             ccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhhee
Confidence            9886333 333447788899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcC---CHHHHHHHHHcCCHHHHHHHhccCCHH
Q 014945          307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG---NVNQIQAIIEAGIIGPLVNLLLNAEFE  383 (415)
Q Consensus       307 l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~---~~~~~~~l~~~~~i~~L~~~l~~~~~~  383 (415)
                      ++|+..|+.++++.+++.+++|.|+.+|.+. +..++++|||+++|...|   -|+.+.++++.|++..|+++|.-.+.+
T Consensus       351 iSNITAGnteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNk  429 (526)
T COG5064         351 ISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNK  429 (526)
T ss_pred             ecccccCCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCcc
Confidence            9999999999999999999999999999999 999999999999999984   689999999999999999999998989


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHH
Q 014945          384 IKKEAAWAISNATSGGSNEQIK  405 (415)
Q Consensus       384 v~~~a~~aL~nl~~~~~~~~~~  405 (415)
                      +-+.++.++.|+...|..+...
T Consensus       430 iiev~LD~~eniLk~Ge~d~~~  451 (526)
T COG5064         430 IIEVALDAIENILKVGEQDRLR  451 (526)
T ss_pred             chhhhHHHHHHHHhhhhHHHHh
Confidence            9999999999999887655443

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=4.5e-37  Score=318.63  Aligned_cols=333  Identities=21%  Similarity=0.245  Sum_probs=285.8

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh
Q 014945           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  150 (415)
Q Consensus        71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  150 (415)
                      |.+|.++..|.++++..+..|+.++.+++... .++...+++.|++|.|+++|++++++.+|..|+|+|++|+.++++++
T Consensus       189 GaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~-ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r  267 (2102)
T PLN03200        189 GGVDILVKLLSSGNSDAQANAASLLARLMMAF-ESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAK  267 (2102)
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHH
Confidence            78999999999999999999999998876653 45788899999999999999875537999999999999999999999


Q ss_pred             HHHHhCCChHHHHHhhCCCC---------HHHHHHHHHHHHHhcCCCch-----------hHHH---HHhcCChHHHHHH
Q 014945          151 RVVIDHGAVPIFVRLLSSPT---------DDVREQAVWALGNVAGDSPK-----------CRDL---VLSNGALMPLLAQ  207 (415)
Q Consensus       151 ~~~~~~g~i~~L~~ll~~~~---------~~v~~~a~~~L~nl~~~~~~-----------~~~~---~~~~g~i~~L~~~  207 (415)
                      ..+++.|++|.|++++.+++         ..++++|+|+|+|||++.+.           .++.   ....|++.+++..
T Consensus       268 ~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l  347 (2102)
T PLN03200        268 QAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMV  347 (2102)
T ss_pred             HHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHh
Confidence            99999999999999998654         34699999999999987543           2222   2345778888888


Q ss_pred             hccchhHhHH----HHHHHHHHHhhhCC-CCCchhh-------------------hhchHHHHHHhhcCCChhHHHHHHH
Q 014945          208 FNEHAKLSML----RNATWTLSNFCRGK-PQPLFEQ-------------------TRPALPALERLIHSNDDEVLTDACW  263 (415)
Q Consensus       208 l~~~~~~~~~----~~a~~~l~~l~~~~-~~~~~~~-------------------~~~~l~~l~~lL~~~d~~v~~~a~~  263 (415)
                      + +..+...+    ..++|+|.+|++++ +......                   ..++++.|+.+|...+.+++..++|
T Consensus       348 ~-d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~  426 (2102)
T PLN03200        348 F-DSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIR  426 (2102)
T ss_pred             c-CCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHH
Confidence            7 44433333    36789999999987 3332211                   1356678889999999999999999


Q ss_pred             HHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchH
Q 014945          264 ALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIK  343 (415)
Q Consensus       264 ~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~  343 (415)
                      +|.+++.++.+..+.+.+.|+++.|+++|.+++..++..|++++++++.++++++..++++|++|.|+++|.++ ++.++
T Consensus       427 aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-~~~iq  505 (2102)
T PLN03200        427 ALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-SQKAK  505 (2102)
T ss_pred             HHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHH-HcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014945          344 KEACWTISNITAGNVNQIQAII-EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYK  407 (415)
Q Consensus       344 ~~a~~~l~nl~~~~~~~~~~l~-~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l  407 (415)
                      ++|+|+|+|++.++++ ++.++ +.|+++.|+++|+++++++++.|+|+|.|++..++.+++..+
T Consensus       506 eeAawAL~NLa~~~~q-ir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~L  569 (2102)
T PLN03200        506 EDSATVLWNLCCHSED-IRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQL  569 (2102)
T ss_pred             HHHHHHHHHHhCCcHH-HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHH
Confidence            9999999999996544 45555 789999999999999999999999999999988888777665

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=2e-34  Score=299.06  Aligned_cols=336  Identities=18%  Similarity=0.193  Sum_probs=299.3

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh
Q 014945           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  150 (415)
Q Consensus        71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  150 (415)
                      ++++.|+.+|...+.+.|..+++.|+.+...+ .+..+.+.+.|++|.|+++|.+++ ..+|..|+|+|++++.++++++
T Consensus       404 daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~-~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~ndenr  481 (2102)
T PLN03200        404 EAKKVLVGLITMATADVQEELIRALSSLCCGK-GGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDESK  481 (2102)
T ss_pred             cchhhhhhhhccCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHH
Confidence            56788999999999999999999999997664 677888999999999999999988 9999999999999999888999


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhC
Q 014945          151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  230 (415)
Q Consensus       151 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~  230 (415)
                      ..+++.|++|.|+++|.+++..+++.|+|+|+|++.+++..+..+...|++++|+.+| ++.+...+..++|+|.+++..
T Consensus       482 ~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nLi~~  560 (2102)
T PLN03200        482 WAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKLVRT  560 (2102)
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999998888888888899999999999 667889999999999999753


Q ss_pred             CCCCc-------------------------------h-------hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 014945          231 KPQPL-------------------------------F-------EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT  272 (415)
Q Consensus       231 ~~~~~-------------------------------~-------~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~  272 (415)
                      .....                               .       ....+++|.|+.+++++++.++..|+|+|.+++.+.
T Consensus       561 ~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~  640 (2102)
T PLN03200        561 ADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSR  640 (2102)
T ss_pred             cchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence            21110                               0       002468999999999999999999999999999999


Q ss_pred             hHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh-HHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHH
Q 014945          273 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD-MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS  351 (415)
Q Consensus       273 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~  351 (415)
                      .+..+.++..|++++++.+|.+.+..++..++|+|+|++.+.. .+...+++.|++++|+++++++ +..++..|+.+|.
T Consensus       641 ~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~ALa  719 (2102)
T PLN03200        641 QDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVCALA  719 (2102)
T ss_pred             hHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHHHHH
Confidence            8888899999999999999999999999999999999997544 4556778999999999999998 9999999999999


Q ss_pred             HHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCHHH-H-HHHHHHhhCC
Q 014945          352 NITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ-I-KYKFFYVSRT  414 (415)
Q Consensus       352 nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~-~-~~l~~~~~~g  414 (415)
                      |++.. ++....+.+.|+++.|+++|++++++.|+.|+|+|.+++.+++.++ + .++   ...|
T Consensus       720 nLl~~-~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~---~~~g  780 (2102)
T PLN03200        720 NLLSD-PEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSV---QCRG  780 (2102)
T ss_pred             HHHcC-chHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHH---HHhC
Confidence            99986 3456778889999999999999999999999999999999988666 4 555   4555

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=8.8e-28  Score=205.56  Aligned_cols=323  Identities=20%  Similarity=0.321  Sum_probs=283.6

Q ss_pred             hhccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCch
Q 014945           69 KLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE  148 (415)
Q Consensus        69 ~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~  148 (415)
                      ..|++..+.++-++.|..+|..+..+|.++...  .++.+.++..|++|.|+.++++++ .++|+.+..++++|+.+ ..
T Consensus       165 ~sGaL~pltrLakskdirvqrnatgaLlnmThs--~EnRr~LV~aG~lpvLVsll~s~d-~dvqyycttaisnIaVd-~~  240 (550)
T KOG4224|consen  165 RSGALEPLTRLAKSKDIRVQRNATGALLNMTHS--RENRRVLVHAGGLPVLVSLLKSGD-LDVQYYCTTAISNIAVD-RR  240 (550)
T ss_pred             hccchhhhHhhcccchhhHHHHHHHHHHHhhhh--hhhhhhhhccCCchhhhhhhccCC-hhHHHHHHHHhhhhhhh-HH
Confidence            347888999988899999999999999998653  578889999999999999999999 99999999999999985 77


Q ss_pred             hhHHHHhCC--ChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHH
Q 014945          149 NTRVVIDHG--AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN  226 (415)
Q Consensus       149 ~~~~~~~~g--~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~  226 (415)
                      .++.+.+.+  .+|.|+.++.+++++++.+|..+|+|++.+.. ++..+.+.|.+|.++.++ +++..+..-....|+.|
T Consensus       241 ~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~-Yq~eiv~ag~lP~lv~Ll-qs~~~plilasVaCIrn  318 (550)
T KOG4224|consen  241 ARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE-YQREIVEAGSLPLLVELL-QSPMGPLILASVACIRN  318 (550)
T ss_pred             HHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch-hhhHHHhcCCchHHHHHH-hCcchhHHHHHHHHHhh
Confidence            888888887  99999999999999999999999999998877 567888999999999999 77777777788889999


Q ss_pred             hhhCCCCCchhhhhchHHHHHHhhcCCC-hhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHH
Q 014945          227 FCRGKPQPLFEQTRPALPALERLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR  305 (415)
Q Consensus       227 l~~~~~~~~~~~~~~~l~~l~~lL~~~d-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~  305 (415)
                      ++-++-........|++..|+.+|...| ++++..|..++.+|+.........+.++|.++.+..++.+....++...-.
T Consensus       319 isihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisa  398 (550)
T KOG4224|consen  319 ISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISA  398 (550)
T ss_pred             cccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHH
Confidence            9988766666667899999999998875 559999999999999877777788999999999999999999999999999


Q ss_pred             HHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHH------cCCHHHHHHHhcc
Q 014945          306 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE------AGIIGPLVNLLLN  379 (415)
Q Consensus       306 ~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~------~~~i~~L~~~l~~  379 (415)
                      +++.++... .....+.+.|++|.|+.+..+. +.+++..|+-+|.|++..-.+ -..+++      .|+-..|.+++.+
T Consensus       399 c~a~Lal~d-~~k~~lld~gi~~iLIp~t~s~-s~Ev~gNaAaAL~Nlss~v~~-YarviEawd~P~~gi~g~L~Rfl~S  475 (550)
T KOG4224|consen  399 CIAQLALND-NDKEALLDSGIIPILIPWTGSE-SEEVRGNAAAALINLSSDVEH-YARVIEAWDHPVQGIQGRLARFLAS  475 (550)
T ss_pred             HHHHHHhcc-ccHHHHhhcCCcceeecccCcc-chhhcccHHHHHHhhhhhhHH-HHHHHHHhcCcchhHHHHHHHHHhh
Confidence            999998754 4677899999999999999998 999999999999999984222 233332      4566789999999


Q ss_pred             CCHHHHHHHHHHHHHHhCCCC
Q 014945          380 AEFEIKKEAAWAISNATSGGS  400 (415)
Q Consensus       380 ~~~~v~~~a~~aL~nl~~~~~  400 (415)
                      .+..++..|.|++..++...+
T Consensus       476 ~~~tf~hia~wTI~qLle~h~  496 (550)
T KOG4224|consen  476 HELTFRHIARWTIQQLLEDHD  496 (550)
T ss_pred             hHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999999997654

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=5.1e-28  Score=206.97  Aligned_cols=320  Identities=23%  Similarity=0.289  Sum_probs=282.3

Q ss_pred             hccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchh
Q 014945           70 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  149 (415)
Q Consensus        70 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  149 (415)
                      +.++..|+..+.++..++|..++.++.+++..  ......+..+|.+..+.++-++.+ ..+|..+..+|.++... .++
T Consensus       125 l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~--d~nk~kiA~sGaL~pltrLakskd-irvqrnatgaLlnmThs-~En  200 (550)
T KOG4224|consen  125 LLGLDLLILQMMTDGVEVQCNAVGCITNLATF--DSNKVKIARSGALEPLTRLAKSKD-IRVQRNATGALLNMTHS-REN  200 (550)
T ss_pred             ccChHHHHHHhcCCCcEEEeeehhhhhhhhcc--ccchhhhhhccchhhhHhhcccch-hhHHHHHHHHHHHhhhh-hhh
Confidence            46788888888888888999999999999875  355567889999999999888888 89999999999999984 899


Q ss_pred             hHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcC--ChHHHHHHhccchhHhHHHHHHHHHHHh
Q 014945          150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNG--ALMPLLAQFNEHAKLSMLRNATWTLSNF  227 (415)
Q Consensus       150 ~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g--~i~~L~~~l~~~~~~~~~~~a~~~l~~l  227 (415)
                      ++.++..|++|.|+.++.+.+..++..|+.+++||+.+.. .|..+.+.+  .++.|++++ ++.+..++..|..+|.++
T Consensus       201 Rr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~-~Rk~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~lALrnl  278 (550)
T KOG4224|consen  201 RRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRR-ARKILAQAEPKLVPALVDLM-DDGSDKVKCQAGLALRNL  278 (550)
T ss_pred             hhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHH-HHHHHHhcccchHHHHHHHH-hCCChHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999999998876 578888888  899999999 888999999999999999


Q ss_pred             hhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCC-hhhHHHHHHH
Q 014945          228 CRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS-PSVLIPALRT  306 (415)
Q Consensus       228 ~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~v~~~a~~~  306 (415)
                      +....-.......+.+|.++++|+++-.........++.|++.++-.. -.+++.|++.+|+.+|...+ +.++..|..+
T Consensus       279 asdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe-~lI~dagfl~pLVrlL~~~dnEeiqchAvst  357 (550)
T KOG4224|consen  279 ASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNE-VLIADAGFLRPLVRLLRAGDNEEIQCHAVST  357 (550)
T ss_pred             cccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcc-cceecccchhHHHHHHhcCCchhhhhhHHHH
Confidence            987543344455899999999999988777788889999998766543 45788999999999998765 5599999999


Q ss_pred             HHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHH
Q 014945          307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKK  386 (415)
Q Consensus       307 l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~  386 (415)
                      |.|++.........+++.|.+|.+..++.++ ...++.+...+++.++-. ......+.+.|++|.|+.+..+.+.+++.
T Consensus       358 LrnLAasse~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal~-d~~k~~lld~gi~~iLIp~t~s~s~Ev~g  435 (550)
T KOG4224|consen  358 LRNLAASSEHNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLALN-DNDKEALLDSGIIPILIPWTGSESEEVRG  435 (550)
T ss_pred             HHHHhhhhhhhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHhc-cccHHHHhhcCCcceeecccCccchhhcc
Confidence            9999998888999999999999999999999 889999999999988864 33467889999999999999999999999


Q ss_pred             HHHHHHHHHhCC
Q 014945          387 EAAWAISNATSG  398 (415)
Q Consensus       387 ~a~~aL~nl~~~  398 (415)
                      +|+.||.|++..
T Consensus       436 NaAaAL~Nlss~  447 (550)
T KOG4224|consen  436 NAAAALINLSSD  447 (550)
T ss_pred             cHHHHHHhhhhh
Confidence            999999999965

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.91  E-value=9.8e-21  Score=182.91  Aligned_cols=320  Identities=19%  Similarity=0.264  Sum_probs=259.6

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh
Q 014945           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  150 (415)
Q Consensus        71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  150 (415)
                      +.++.|++.|.+++.++...++..|.++...  .++...+.+.|+++.|.+++.+++ .+++..++++|.|++.+ ++.+
T Consensus       290 ~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~--~ENK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSfd-~~~R  365 (708)
T PF05804_consen  290 GIVSLLVKCLDRENEELLILAVTFLKKLSIF--KENKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSFD-PELR  365 (708)
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCcC-HHHH
Confidence            7899999999999999999999999998543  567888999999999999999988 89999999999999996 8899


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhC
Q 014945          151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  230 (415)
Q Consensus       151 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~  230 (415)
                      ..+++.|++|.|+.+|.++  ..+..|+.+|++++.+.. .|..+...++++.+++++...++..+...+++++.|++..
T Consensus       366 ~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~-~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~  442 (708)
T PF05804_consen  366 SQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDE-ARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN  442 (708)
T ss_pred             HHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHh-hHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC
Confidence            9999999999999999864  456779999999998775 7889999999999999885655555555566666665544


Q ss_pred             CCCCch-------------------------------------hhhhchHHHHHHhhcC-CChhHHHHHHHHHHHhccCC
Q 014945          231 KPQPLF-------------------------------------EQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGT  272 (415)
Q Consensus       231 ~~~~~~-------------------------------------~~~~~~l~~l~~lL~~-~d~~v~~~a~~~l~~l~~~~  272 (415)
                      ......                                     ....+.+..|+..+.. ++++....++.+++|+...+
T Consensus       443 ~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~  522 (708)
T PF05804_consen  443 KRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPD  522 (708)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCC
Confidence            321111                                     1122344444445544 46788999999999998766


Q ss_pred             hHHHHHHHHcCcHHHHHHhcCCC--ChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCC-CccchHHHHHHH
Q 014945          273 NDKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-YKKSIKKEACWT  349 (415)
Q Consensus       273 ~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~v~~~a~~~  349 (415)
                      .+....+-+.+++|.|...|..+  ++++...++..+|.++. .+.....+.+.|+++.|+.++... +|.++.-..+++
T Consensus       523 ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~  601 (708)
T PF05804_consen  523 LDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYV  601 (708)
T ss_pred             cCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHH
Confidence            56656555679999999999644  45788899999999996 455777788999999999999765 267899999999


Q ss_pred             HHHHhcCCHHHHHHHH-HcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Q 014945          350 ISNITAGNVNQIQAII-EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG  399 (415)
Q Consensus       350 l~nl~~~~~~~~~~l~-~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~  399 (415)
                      +.++..+. +.+..++ +.+++..|++++++.++.+++.|-.+|--++...
T Consensus       602 f~~ll~h~-~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d  651 (708)
T PF05804_consen  602 FYQLLFHE-ETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYD  651 (708)
T ss_pred             HHHHHcCh-HHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC
Confidence            99999974 4566666 4789999999999999999999999998888763

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.88  E-value=1.9e-19  Score=174.00  Aligned_cols=315  Identities=18%  Similarity=0.201  Sum_probs=251.1

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHH
Q 014945           75 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI  154 (415)
Q Consensus        75 ~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~  154 (415)
                      .+-.++..++ .+..-+...|.+++..  ......+.+.|+++.|+++|++++ .++...++++|.+++.. .+++..+.
T Consensus       254 k~~~l~~kQe-qLlrv~~~lLlNLAed--~~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi~-~ENK~~m~  328 (708)
T PF05804_consen  254 KLQTLIRKQE-QLLRVAFYLLLNLAED--PRVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSIF-KENKDEMA  328 (708)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHhcC--hHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence            3334444443 3445677888898642  355566889999999999999988 89999999999999985 78999999


Q ss_pred             hCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCC
Q 014945          155 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP  234 (415)
Q Consensus       155 ~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~  234 (415)
                      +.|+++.|.+++.+++..++..++++|.|++.+.. .|..+++.|++|.|+.+|. +  +..+..++.+|.++|..+...
T Consensus       329 ~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~-~R~~mV~~GlIPkLv~LL~-d--~~~~~val~iLy~LS~dd~~r  404 (708)
T PF05804_consen  329 ESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPE-LRSQMVSLGLIPKLVELLK-D--PNFREVALKILYNLSMDDEAR  404 (708)
T ss_pred             HcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHH-HHHHHHHCCCcHHHHHHhC-C--CchHHHHHHHHHHhccCHhhH
Confidence            99999999999999999999999999999998876 6899999999999999994 3  345567899999999987666


Q ss_pred             chhhhhchHHHHHHhhcC-CChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHH-----------------------
Q 014945          235 LFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE-----------------------  290 (415)
Q Consensus       235 ~~~~~~~~l~~l~~lL~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~-----------------------  290 (415)
                      ......+++|.+++++.+ +++.+...+++++.|++..... .+.+.+.|+++.|+.                       
T Consensus       405 ~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rn-aqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~  483 (708)
T PF05804_consen  405 SMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRN-AQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGP  483 (708)
T ss_pred             HHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHH-HHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCch
Confidence            666667899999987644 5666777777888887765543 355555455544333                       


Q ss_pred             --------------hcCC-CChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCC-CccchHHHHHHHHHHHh
Q 014945          291 --------------LLRH-PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-YKKSIKKEACWTISNIT  354 (415)
Q Consensus       291 --------------lL~~-~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~v~~~a~~~l~nl~  354 (415)
                                    .+.. ++++....++++|+|+...+....+.+.+.+++|.+...|..+ ..+++.-+++..++.++
T Consensus       484 ~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla  563 (708)
T PF05804_consen  484 LKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLA  563 (708)
T ss_pred             HHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHH
Confidence                          3322 3567888999999999987666666666789999999999765 24579999999999998


Q ss_pred             cCCHHHHHHHHHcCCHHHHHHHhcc--CCHHHHHHHHHHHHHHhCCCC
Q 014945          355 AGNVNQIQAIIEAGIIGPLVNLLLN--AEFEIKKEAAWAISNATSGGS  400 (415)
Q Consensus       355 ~~~~~~~~~l~~~~~i~~L~~~l~~--~~~~v~~~a~~aL~nl~~~~~  400 (415)
                      . ++.....+.+.|+++.|+.+|..  .|.+.....++++..+..+..
T Consensus       564 ~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~  610 (708)
T PF05804_consen  564 S-DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEE  610 (708)
T ss_pred             C-CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChH
Confidence            6 56777788899999999999986  668899999999999998853

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=3.5e-17  Score=154.47  Aligned_cols=331  Identities=20%  Similarity=0.300  Sum_probs=266.0

Q ss_pred             cHHHHHHhhcCC-CHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh
Q 014945           72 SLPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  150 (415)
Q Consensus        72 ~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  150 (415)
                      .+.+|++.|+.. |+..|.+|+..++.+++....+....+--.-++|.|+.+|++..+.++...|+++|++++..-|...
T Consensus       168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~  247 (1051)
T KOG0168|consen  168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS  247 (1051)
T ss_pred             HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence            467889999865 9999999999999998876555555555566899999999998889999999999999999999999


Q ss_pred             HHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhh
Q 014945          151 RVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  229 (415)
Q Consensus       151 ~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~  229 (415)
                      ..+++.++||.|+.-|.. ....+.++++.+|-.|+...+   ..+++.|++...+..| +--+..+++.|+.+.+|.|.
T Consensus       248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~Ck  323 (1051)
T KOG0168|consen  248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYL-DFFSIHAQRVALAIAANCCK  323 (1051)
T ss_pred             heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence            999999999999986554 678899999999999998887   4788999999999998 77788999999999999999


Q ss_pred             CCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC---ChHHHHHHHHcCcHHHHHHhcCCCC----hhhHHH
Q 014945          230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLRHPS----PSVLIP  302 (415)
Q Consensus       230 ~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~i~~L~~lL~~~~----~~v~~~  302 (415)
                      .-+...+..+...+|.|..+|++.|....+.+|-++.+++.+   .++..+.+...|++....++|.-..    ..+...
T Consensus       324 si~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~  403 (1051)
T KOG0168|consen  324 SIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTG  403 (1051)
T ss_pred             cCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhH
Confidence            988888889999999999999999999999999999999754   5577788999999999999986442    346677


Q ss_pred             HHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCc-------------cc-hHHHHH---------------------
Q 014945          303 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYK-------------KS-IKKEAC---------------------  347 (415)
Q Consensus       303 a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~-------------~~-v~~~a~---------------------  347 (415)
                      .++.+..++.+.+-....+...++...+..+|.....             |. +....+                     
T Consensus       404 vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~  483 (1051)
T KOG0168|consen  404 VIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSL  483 (1051)
T ss_pred             HHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhh
Confidence            8888999999888777777777777777777643210             00 000000                     


Q ss_pred             ------------------------------HHHH-------------H---------HhcCCHHHHHHHHHcCCHHHHHH
Q 014945          348 ------------------------------WTIS-------------N---------ITAGNVNQIQAIIEAGIIGPLVN  375 (415)
Q Consensus       348 ------------------------------~~l~-------------n---------l~~~~~~~~~~l~~~~~i~~L~~  375 (415)
                                                    ..+.             +         +....|+-.+.++.. ++|.|++
T Consensus       484 ~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~~-llpVLve  562 (1051)
T KOG0168|consen  484 IYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGKD-LLPVLVE  562 (1051)
T ss_pred             hcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHHH-HHHHHHH
Confidence                                          0001             0         001122333333333 7899999


Q ss_pred             Hhcc-CCHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014945          376 LLLN-AEFEIKKEAAWAISNATSGGSNEQIKYK  407 (415)
Q Consensus       376 ~l~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~l  407 (415)
                      ++.+ .++.||..++.||..+....+.+.|..+
T Consensus       563 VYsSsA~~~VR~kcL~Ailrlvy~s~seli~sl  595 (1051)
T KOG0168|consen  563 VYSSSANPDVRYKCLSAILRLVYFSNSELIGSL  595 (1051)
T ss_pred             HHhccCCchhhHHHHHHHHHHHhhCCHHHHHHH
Confidence            9886 6799999999999999999999988877

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.77  E-value=9.6e-16  Score=130.83  Aligned_cols=311  Identities=12%  Similarity=0.124  Sum_probs=250.1

Q ss_pred             cCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCC-CChHHHHHHHHHHHHHhCCCchhhHHHHhCCCh
Q 014945           81 WSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD-DFPQLQFEAAWALTNIASGTSENTRVVIDHGAV  159 (415)
Q Consensus        81 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i  159 (415)
                      .+++....+.++.+|..+..+     ...+.+..++..++.+|... ++.++....+.++..-+..+..+++.+++.+++
T Consensus       117 ~~~~~~~l~ksL~al~~lt~~-----qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il  191 (461)
T KOG4199|consen  117 ESPNESVLKKSLEAINSLTHK-----QPDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKIL  191 (461)
T ss_pred             hCCchhHHHHHHHHHHHhhcC-----CcchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHH
Confidence            356666777777777766432     24566777888999988753 237888888889999888889999999999999


Q ss_pred             HHHHHhhCC-CCHHHHHHHHHHHHHhcCCCc---------hhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhh
Q 014945          160 PIFVRLLSS-PTDDVREQAVWALGNVAGDSP---------KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  229 (415)
Q Consensus       160 ~~L~~ll~~-~~~~v~~~a~~~L~nl~~~~~---------~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~  229 (415)
                      +.+...|.. ....+...+.|++.-+..++.         .....+...|++..|+..+.-..++.+...++.+|..|+-
T Consensus       192 ~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAV  271 (461)
T KOG4199|consen  192 ELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAV  271 (461)
T ss_pred             HHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHH
Confidence            999977665 445688899999999886653         2346677888899999999666789999999999999987


Q ss_pred             CCCCCchhhhhchHHHHHHhhcCC-Chh---HHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhc--CCCChhhHHHH
Q 014945          230 GKPQPLFEQTRPALPALERLIHSN-DDE---VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL--RHPSPSVLIPA  303 (415)
Q Consensus       230 ~~~~~~~~~~~~~l~~l~~lL~~~-d~~---v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL--~~~~~~v~~~a  303 (415)
                      .+.-.......|++..++.++.+. +..   ....++..|..++..++ ....+++.|+.+.++.++  .+++|.+...+
T Consensus       272 r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~Ds-vKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~  350 (461)
T KOG4199|consen  272 RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDS-VKSTIVEKGGLDKIITLALRHSDDPLVIQEV  350 (461)
T ss_pred             HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCc-hHHHHHHhcChHHHHHHHHHcCCChHHHHHH
Confidence            765555666789999999999874 333   45677888888876554 457799999999999997  35688999999


Q ss_pred             HHHHHHhhcCChHHHHHHHHCCChHHHHHHhc-CCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCH
Q 014945          304 LRTVGNIVTGDDMQTQCIINHQALPCLLDLLT-QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEF  382 (415)
Q Consensus       304 ~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~  382 (415)
                      +.+++-++-..++....+++.|+-...++.++ ++....+++.|||.+.|++..+.++...++.. +++.|+......++
T Consensus       351 ~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~-GiE~Li~~A~~~h~  429 (461)
T KOG4199|consen  351 MAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLAN-GIEKLIRTAKANHE  429 (461)
T ss_pred             HHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhc-cHHHHHHHHHhcCc
Confidence            99999999999989999999999998888775 44456899999999999999888888888777 67888888888889


Q ss_pred             HHHHHHHHHHHHHhCC
Q 014945          383 EIKKEAAWAISNATSG  398 (415)
Q Consensus       383 ~v~~~a~~aL~nl~~~  398 (415)
                      .+...|..||..+-.+
T Consensus       430 tce~~akaALRDLGc~  445 (461)
T KOG4199|consen  430 TCEAAAKAALRDLGCD  445 (461)
T ss_pred             cHHHHHHHHHHhcCcc
Confidence            9999999999888644

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.75  E-value=4e-16  Score=147.80  Aligned_cols=321  Identities=25%  Similarity=0.288  Sum_probs=244.7

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCch--
Q 014945           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE--  148 (415)
Q Consensus        71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~--  148 (415)
                      -.+|+.+.+|.++++..|-.|+..+..+..+. +.....+.+.|+|+.|+.+|.+.. .+++.+|+++|.|+..++..  
T Consensus       233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd-~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~~~  310 (717)
T KOG1048|consen  233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGD-NKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKSTDS  310 (717)
T ss_pred             cccHHHHHHHhccChhhhHHHHHHHHHHHhhh-HHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCCcc
Confidence            46899999999999999999999998885543 555566778999999999999999 99999999999999997766  


Q ss_pred             hhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhcc-c------------hhH
Q 014945          149 NTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE-H------------AKL  214 (415)
Q Consensus       149 ~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~-~------------~~~  214 (415)
                      ++-.+.+.++++.++++|.. .|.++++.+..+|+||+..+. ++..++. ..+..|...+.. .            .+.
T Consensus       311 NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~-lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~  388 (717)
T KOG1048|consen  311 NKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDA-LKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDS  388 (717)
T ss_pred             cchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhH-HHHHHHH-HHHHHHHHhhcccccccCCCCcccccccc
Confidence            88889999999999999997 789999999999999998844 5555544 366666655421 1            135


Q ss_pred             hHHHHHHHHHHHhhhCCC-CC-chhhhhchHHHHHHhhc-----------------------------------------
Q 014945          215 SMLRNATWTLSNFCRGKP-QP-LFEQTRPALPALERLIH-----------------------------------------  251 (415)
Q Consensus       215 ~~~~~a~~~l~~l~~~~~-~~-~~~~~~~~l~~l~~lL~-----------------------------------------  251 (415)
                      ++..+++.+|.|++.... .. .+....|++..|+..++                                         
T Consensus       389 ~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~  468 (717)
T KOG1048|consen  389 TVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLAN  468 (717)
T ss_pred             eeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhc
Confidence            677888888888875321 11 11111222333222221                                         


Q ss_pred             -------------------------------------------------------------CCChhHHHHHHHHHHHhcc
Q 014945          252 -------------------------------------------------------------SNDDEVLTDACWALSYLSD  270 (415)
Q Consensus       252 -------------------------------------------------------------~~d~~v~~~a~~~l~~l~~  270 (415)
                                                                                   +.++.+.+.++.+|.|++.
T Consensus       469 ~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA  548 (717)
T KOG1048|consen  469 IARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTA  548 (717)
T ss_pred             ccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhc
Confidence                                                                         1234455666777777765


Q ss_pred             CCh----HHHHHH-HHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCc-----c
Q 014945          271 GTN----DKIQAV-IEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYK-----K  340 (415)
Q Consensus       271 ~~~----~~~~~~-~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~-----~  340 (415)
                      +..    .....+ ..+.+++.|+++|..++..+...++.+|.|++.+..  .+.++..++++.|+..|.....     .
T Consensus       549 ~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~r--nk~ligk~a~~~lv~~Lp~~~~~~~~se  626 (717)
T KOG1048|consen  549 GLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIR--NKELIGKYAIPDLVRCLPGSGPSTSLSE  626 (717)
T ss_pred             cCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCch--hhhhhhcchHHHHHHhCcCCCCCcCchH
Confidence            432    111222 456788999999999999999999999999998543  4556778999999999966533     6


Q ss_pred             chHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHHHHHHHHHhC
Q 014945          341 SIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNATS  397 (415)
Q Consensus       341 ~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~-~~~~v~~~a~~aL~nl~~  397 (415)
                      ++...+|.+|.|+...+..+...+.+.+.++.|+.+..+ .++++.+.|...|..+=.
T Consensus       627 dtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~  684 (717)
T KOG1048|consen  627 DTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQ  684 (717)
T ss_pred             HHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence            788999999999999999999999999999999999887 457899999888888753

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.75  E-value=2.1e-15  Score=144.56  Aligned_cols=316  Identities=19%  Similarity=0.241  Sum_probs=246.4

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHH
Q 014945           74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV  153 (415)
Q Consensus        74 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~  153 (415)
                      +.++..|++++.+....++.+|..++...  .+ ..+ ..+..+.|...|.+++ +.+|..+++.+++++.++......+
T Consensus        41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~--~~-~~l-~~~~~~~L~~gL~h~~-~~Vr~l~l~~l~~~~~~~~~~~~~~  115 (503)
T PF10508_consen   41 PVLFDCLNTSNREQVELICDILKRLLSAL--SP-DSL-LPQYQPFLQRGLTHPS-PKVRRLALKQLGRIARHSEGAAQLL  115 (503)
T ss_pred             HHHHHHHhhcChHHHHHHHHHHHHHHhcc--CH-HHH-HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHHHHHHh
Confidence            34788888888888888889999998643  22 222 4567899999999998 9999999999999999877777888


Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCC
Q 014945          154 IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ  233 (415)
Q Consensus       154 ~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~  233 (415)
                      .+.++++.++.++.+++..+...|+.+|.+++...+.. +.++..+.+..|..++ ...+..++..+.+++.+++...+.
T Consensus       116 ~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~~  193 (503)
T PF10508_consen  116 VDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSPE  193 (503)
T ss_pred             cCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCHH
Confidence            88999999999999999999999999999999887754 5677878888888888 555667888899999999877532


Q ss_pred             -CchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCCh-----hhHH-HHHHH
Q 014945          234 -PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP-----SVLI-PALRT  306 (415)
Q Consensus       234 -~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~-----~v~~-~a~~~  306 (415)
                       .......|+++.++..+.++|.-++.+++.++..++. .+...+.+.+.|+++.|..++.+.+.     .+.. ..+..
T Consensus       194 ~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f  272 (503)
T PF10508_consen  194 AAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKF  272 (503)
T ss_pred             HHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHH
Confidence             2333446899999999999999999999999999998 44556889999999999999964422     2233 34478


Q ss_pred             HHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHH-HHcC-----CHHHHHHHhccC
Q 014945          307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI-IEAG-----IIGPLVNLLLNA  380 (415)
Q Consensus       307 l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l-~~~~-----~i~~L~~~l~~~  380 (415)
                      .|+++...+....... ..++..+..++.+. ++..+..|.-+++.|+.. .+....+ ...+     ++..+.....++
T Consensus       273 ~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~-d~~~~~~A~dtlg~igst-~~G~~~L~~~~~~~~~~~l~~~~~~~~~~  349 (503)
T PF10508_consen  273 FGNLARVSPQEVLELY-PAFLERLFSMLESQ-DPTIREVAFDTLGQIGST-VEGKQLLLQKQGPAMKHVLKAIGDAIKSG  349 (503)
T ss_pred             HHHHHhcChHHHHHHH-HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHhCC-HHHHHHHHhhcchHHHHHHHHHHHHhcCC
Confidence            8888885443332211 24566777777888 999999999999999964 4545555 3322     355555556667


Q ss_pred             CHHHHHHHHHHHHHHhCCCC
Q 014945          381 EFEIKKEAAWAISNATSGGS  400 (415)
Q Consensus       381 ~~~v~~~a~~aL~nl~~~~~  400 (415)
                      ..++|..++.++.++...++
T Consensus       350 ~~~lk~r~l~al~~il~~~~  369 (503)
T PF10508_consen  350 STELKLRALHALASILTSGT  369 (503)
T ss_pred             chHHHHHHHHHHHHHHhcCC
Confidence            88999999999999976554

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.74  E-value=9.9e-15  Score=139.88  Aligned_cols=320  Identities=19%  Similarity=0.234  Sum_probs=250.1

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (415)
Q Consensus        72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  151 (415)
                      ..+.+...|.++++.++..+++.+.+++... ....+.+.+.++++.++.++.+++ ..+...|+.+|.+++.. +....
T Consensus        78 ~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~-~~~~~~~~~~~l~~~i~~~L~~~d-~~Va~~A~~~L~~l~~~-~~~~~  154 (503)
T PF10508_consen   78 YQPFLQRGLTHPSPKVRRLALKQLGRIARHS-EGAAQLLVDNELLPLIIQCLRDPD-LSVAKAAIKALKKLASH-PEGLE  154 (503)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-HHHHHHhcCccHHHHHHHHHcCCc-HHHHHHHHHHHHHHhCC-chhHH
Confidence            4577888999999999999999999987543 344566778999999999999999 99999999999999985 55667


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC
Q 014945          152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK  231 (415)
Q Consensus       152 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~  231 (415)
                      .+++.+.++.|..++..+++.++-.+..++.+++..++.....+...|+++.++..+ +++|.-++.+++.++..|+..+
T Consensus       155 ~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL-~~dDiLvqlnalell~~La~~~  233 (503)
T PF10508_consen  155 QLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKEL-DSDDILVQLNALELLSELAETP  233 (503)
T ss_pred             HHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHh-cCccHHHHHHHHHHHHHHHcCh
Confidence            788888899999999888888999999999999999999999999999999999999 6689999999999999999976


Q ss_pred             CCCchhhhhchHHHHHHhhcCC--Ch---h-HHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHH
Q 014945          232 PQPLFEQTRPALPALERLIHSN--DD---E-VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR  305 (415)
Q Consensus       232 ~~~~~~~~~~~l~~l~~lL~~~--d~---~-v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~  305 (415)
                      ....+....|+++.|..++.+.  |+   . .....+...++++...+..+-... ..++..+..++.+.++..+..|+.
T Consensus       234 ~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A~d  312 (503)
T PF10508_consen  234 HGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELY-PAFLERLFSMLESQDPTIREVAFD  312 (503)
T ss_pred             hHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHH
Confidence            6667777789999999999654  23   1 233344677777765433322111 246677778888999999999999


Q ss_pred             HHHHhhcCChHHHHHH-HHC-C----ChHHHHHHhcCCCccchHHHHHHHHHHHhcC-C---HHHHHHH----H---HcC
Q 014945          306 TVGNIVTGDDMQTQCI-INH-Q----ALPCLLDLLTQNYKKSIKKEACWTISNITAG-N---VNQIQAI----I---EAG  368 (415)
Q Consensus       306 ~l~nl~~~~~~~~~~~-~~~-~----~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~-~---~~~~~~l----~---~~~  368 (415)
                      ++|.++...+ ....+ ... +    ++..+.....++ ..++|..+..+++++... .   .+.+..+    .   ..+
T Consensus       313 tlg~igst~~-G~~~L~~~~~~~~~~~l~~~~~~~~~~-~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~  390 (503)
T PF10508_consen  313 TLGQIGSTVE-GKQLLLQKQGPAMKHVLKAIGDAIKSG-STELKLRALHALASILTSGTDRQDNDILSITESWYESLSGS  390 (503)
T ss_pred             HHHHHhCCHH-HHHHHHhhcchHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCC
Confidence            9999997554 55545 333 2    344555555666 778999999999999642 1   2222222    1   223


Q ss_pred             CHH-HHHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945          369 IIG-PLVNLLLNAEFEIKKEAAWAISNATSG  398 (415)
Q Consensus       369 ~i~-~L~~~l~~~~~~v~~~a~~aL~nl~~~  398 (415)
                      -.. .++.+++.+-+++|..+...|..++.+
T Consensus       391 ~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~  421 (503)
T PF10508_consen  391 PLSNLLMSLLKQPFPELRCAAYRLLQALAAQ  421 (503)
T ss_pred             chHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence            344 778888888899999999999998866

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PRK09687 putative lyase; Provisional

Probab=99.73  E-value=2.9e-15  Score=131.96  Aligned_cols=254  Identities=16%  Similarity=0.125  Sum_probs=201.0

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (415)
Q Consensus        72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  151 (415)
                      .++.|++.|.+.|..++..++..|..+-.            ..+++.+..++++++ +.+|..++++|+.+......   
T Consensus        24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~------------~~~~~~l~~ll~~~d-~~vR~~A~~aLg~lg~~~~~---   87 (280)
T PRK09687         24 NDDELFRLLDDHNSLKRISSIRVLQLRGG------------QDVFRLAIELCSSKN-PIERDIGADILSQLGMAKRC---   87 (280)
T ss_pred             cHHHHHHHHhCCCHHHHHHHHHHHHhcCc------------chHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCccc---
Confidence            56889999999999999999999988732            225678888888888 99999999999998753211   


Q ss_pred             HHHhCCChHHHHHh-hCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhC
Q 014945          152 VVIDHGAVPIFVRL-LSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  230 (415)
Q Consensus       152 ~~~~~g~i~~L~~l-l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~  230 (415)
                         ...+++.|..+ ++++++.|+..|+.+||+++......     ...++..+...+ .+.+..++..++++|..+.. 
T Consensus        88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~-  157 (280)
T PRK09687         88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITA-FDKSTNVRFAVAFALSVIND-  157 (280)
T ss_pred             ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHh-hCCCHHHHHHHHHHHhccCC-
Confidence               11357778776 67789999999999999996443311     111344555666 66788999999999976542 


Q ss_pred             CCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHh
Q 014945          231 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI  310 (415)
Q Consensus       231 ~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl  310 (415)
                               ...++.|+.+|.++++.|+..|+.+|+.+....+         .+++.|+..|.+.++.|+..|+++||.+
T Consensus       158 ---------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~  219 (280)
T PRK09687        158 ---------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLALR  219 (280)
T ss_pred             ---------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence                     3578999999999999999999999999843333         2457899999999999999999999996


Q ss_pred             hcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhc-cCCHHHHHHHH
Q 014945          311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL-NAEFEIKKEAA  389 (415)
Q Consensus       311 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~-~~~~~v~~~a~  389 (415)
                      -.  +         .++|.|++.+.++ +  ++..++.+|+++..  +.         .+|.|..++. ++|.+++..|.
T Consensus       220 ~~--~---------~av~~Li~~L~~~-~--~~~~a~~ALg~ig~--~~---------a~p~L~~l~~~~~d~~v~~~a~  274 (280)
T PRK09687        220 KD--K---------RVLSVLIKELKKG-T--VGDLIIEAAGELGD--KT---------LLPVLDTLLYKFDDNEIITKAI  274 (280)
T ss_pred             CC--h---------hHHHHHHHHHcCC-c--hHHHHHHHHHhcCC--Hh---------HHHHHHHHHhhCCChhHHHHHH
Confidence            43  2         4688999999887 4  78899999999875  33         6889999997 78999999999


Q ss_pred             HHHHH
Q 014945          390 WAISN  394 (415)
Q Consensus       390 ~aL~n  394 (415)
                      ++|..
T Consensus       275 ~a~~~  279 (280)
T PRK09687        275 DKLKR  279 (280)
T ss_pred             HHHhc
Confidence            99863

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.70  E-value=2.8e-14  Score=122.00  Aligned_cols=292  Identities=16%  Similarity=0.180  Sum_probs=229.2

Q ss_pred             hcCchHHHHHhh---cCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhcC
Q 014945          112 QSGVVPRFIEFL---SRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAG  186 (415)
Q Consensus       112 ~~g~i~~L~~ll---~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~~L~nl~~  186 (415)
                      ..|..+.++.++   .+++ ..+...++.+|..+..+.|+.    .+..++..++.+|..  ++.++....+.++..-|.
T Consensus       102 ~~ga~~~~it~~~la~~~~-~~~l~ksL~al~~lt~~qpdl----~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~  176 (461)
T KOG4199|consen  102 KNGAHDALITLLELAESPN-ESVLKKSLEAINSLTHKQPDL----FDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACI  176 (461)
T ss_pred             cCCCcchhhhHHHHhhCCc-hhHHHHHHHHHHHhhcCCcch----hccccHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence            345555554433   3455 788889999999888876654    456778889998864  567788888888888888


Q ss_pred             CCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCC-chh---------hhhchHHHHHHhhcCC-Ch
Q 014945          187 DSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP-LFE---------QTRPALPALERLIHSN-DD  255 (415)
Q Consensus       187 ~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~---------~~~~~l~~l~~lL~~~-d~  255 (415)
                      ..+.+|+.+.+.++++.+.+.|.......+.+.++|++.-+...+... .+.         ...+++..|.+.++-. ||
T Consensus       177 ~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp  256 (461)
T KOG4199|consen  177 MHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDP  256 (461)
T ss_pred             HhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCc
Confidence            888899999999999999988866666689999999999998775322 111         1245677788887654 79


Q ss_pred             hHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCC-hh---hHHHHHHHHHHhhcCChHHHHHHHHCCChHHHH
Q 014945          256 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS-PS---VLIPALRTVGNIVTGDDMQTQCIINHQALPCLL  331 (415)
Q Consensus       256 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~---v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~  331 (415)
                      .+...++.+|..++-.++- .+.+.+.|+++.|++++.+.+ ..   ....++..|..++. ++.....+++.|+.+.++
T Consensus       257 ~~L~~l~~tl~~lAVr~E~-C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~IV~~gg~~~ii  334 (461)
T KOG4199|consen  257 DSLVSLSTTLKALAVRDEI-CKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKSTIVEKGGLDKII  334 (461)
T ss_pred             cHHHHHHHHHHHHHHHHHH-HHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHHHHHhcChHHHH
Confidence            9999999999999876654 466899999999999998743 33   44678888888876 556788899999999999


Q ss_pred             HHh-cCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCC--HHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014945          332 DLL-TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAE--FEIKKEAAWAISNATSGGSNEQIKYKF  408 (415)
Q Consensus       332 ~ll-~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~--~~v~~~a~~aL~nl~~~~~~~~~~~l~  408 (415)
                      .++ .+..+|.|..+++.+++-++-..|++-...++.|+-...++.|+...  ..++++|||++.|++.+ +.++...+ 
T Consensus       335 ~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~r-s~~~~~~~-  412 (461)
T KOG4199|consen  335 TLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVR-SAENRTIL-  412 (461)
T ss_pred             HHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh-hhhccchH-
Confidence            866 45558899999999999999988999999999999999999998643  57999999999999987 44555555 


Q ss_pred             HHhhCC
Q 014945          409 FYVSRT  414 (415)
Q Consensus       409 ~~~~~g  414 (415)
                        +..|
T Consensus       413 --l~~G  416 (461)
T KOG4199|consen  413 --LANG  416 (461)
T ss_pred             --Hhcc
Confidence              5555

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=4.3e-16  Score=143.74  Aligned_cols=318  Identities=19%  Similarity=0.241  Sum_probs=218.9

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhH-HH---hcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCC
Q 014945           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINE-VI---QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT  146 (415)
Q Consensus        71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~-~~---~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~  146 (415)
                      +.+|.|.++|.++|...+.-|..+|.++.... .+..+. +.   -.-.+|.|+++.++++ +.+|..|+.|+..+.-..
T Consensus       128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDs-a~~lds~~~~rpl~~mipkfl~f~~h~s-pkiRs~A~~cvNq~i~~~  205 (885)
T KOG2023|consen  128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDS-AQFLDSDVLTRPLNIMIPKFLQFFKHPS-PKIRSHAVGCVNQFIIIQ  205 (885)
T ss_pred             hHHHHHHHHhcCCcccccchhHHHHHHHHhhh-HHHHhhhcccCchHHhHHHHHHHHhCCC-hhHHHHHHhhhhheeecC
Confidence            35788999999999999999999999985332 111111 00   0125899999999998 999999999998877643


Q ss_pred             chhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHH
Q 014945          147 SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN  226 (415)
Q Consensus       147 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~  226 (415)
                      ++....-++ ..++.+..+-.+++++||.+.+.++..+....+. +-.-.-.++++.++... ++.++.+.-.||..+..
T Consensus       206 ~qal~~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d-kl~phl~~IveyML~~t-qd~dE~VALEACEFwla  282 (885)
T KOG2023|consen  206 TQALYVHID-KFLEILFALANDEDPEVRKNVCRALVFLLEVRPD-KLVPHLDNIVEYMLQRT-QDVDENVALEACEFWLA  282 (885)
T ss_pred             cHHHHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH-hcccchHHHHHHHHHHc-cCcchhHHHHHHHHHHH
Confidence            433222222 4577777888889999999999999999876653 11111234566777766 67788899999999999


Q ss_pred             hhhCCCC--CchhhhhchHHHHHHhhcCCCh-------------------------------------------------
Q 014945          227 FCRGKPQ--PLFEQTRPALPALERLIHSNDD-------------------------------------------------  255 (415)
Q Consensus       227 l~~~~~~--~~~~~~~~~l~~l~~lL~~~d~-------------------------------------------------  255 (415)
                      ++..+..  .-......++|.|+.-+..++.                                                 
T Consensus       283 ~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DD  362 (885)
T KOG2023|consen  283 LAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDD  362 (885)
T ss_pred             HhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccc
Confidence            9988511  1123345667776654422111                                                 


Q ss_pred             -------hHHHHHHHHHHHhccCChHHHHHHHHcCc----HHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHC
Q 014945          256 -------EVLTDACWALSYLSDGTNDKIQAVIEAGV----CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH  324 (415)
Q Consensus       256 -------~v~~~a~~~l~~l~~~~~~~~~~~~~~~~----i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~  324 (415)
                             .+|.-.+.+|--++        .+....+    +|.|-+.|.+++|.+++.+..++|.|+.|.-   +.+..+
T Consensus       363 dD~~~dWNLRkCSAAaLDVLa--------nvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM---~g~~p~  431 (885)
T KOG2023|consen  363 DDAFSDWNLRKCSAAALDVLA--------NVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCM---QGFVPH  431 (885)
T ss_pred             ccccccccHhhccHHHHHHHH--------HhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHh---hhcccc
Confidence                   12222222222222        1222333    4555556678899999999999999998753   333333


Q ss_pred             --CChHHHHHHhcCCCccchHHHHHHHHHHHhcC--CHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCC
Q 014945          325 --QALPCLLDLLTQNYKKSIKKEACWTISNITAG--NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS  400 (415)
Q Consensus       325 --~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~--~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~  400 (415)
                        .++|.++.+|.+. .+-||.-+||+|+..+..  ..+ .+..... ++..|++.+-+++-+|++.||.|+..+-+.+.
T Consensus       432 LpeLip~l~~~L~DK-kplVRsITCWTLsRys~wv~~~~-~~~~f~p-vL~~ll~~llD~NK~VQEAAcsAfAtleE~A~  508 (885)
T KOG2023|consen  432 LPELIPFLLSLLDDK-KPLVRSITCWTLSRYSKWVVQDS-RDEYFKP-VLEGLLRRLLDSNKKVQEAACSAFATLEEEAG  508 (885)
T ss_pred             hHHHHHHHHHHhccC-ccceeeeeeeeHhhhhhhHhcCC-hHhhhHH-HHHHHHHHHhcccHHHHHHHHHHHHHHHHhcc
Confidence              4789999999999 999999999999998862  111 2222222 56667777778999999999999999999888


Q ss_pred             HHHHHHH
Q 014945          401 NEQIKYK  407 (415)
Q Consensus       401 ~~~~~~l  407 (415)
                      .+.++|+
T Consensus       509 ~eLVp~l  515 (885)
T KOG2023|consen  509 EELVPYL  515 (885)
T ss_pred             chhHHHH
Confidence            8777766

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=5.3e-14  Score=138.30  Aligned_cols=329  Identities=19%  Similarity=0.212  Sum_probs=235.0

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHH
Q 014945           73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV  152 (415)
Q Consensus        73 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~  152 (415)
                      ++-|++..+|+++..|..|+..|..+...-.+.....+-  .+.+.|.+.+.+++ ..+|..|+++++.++...+..+..
T Consensus       120 l~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~--~l~~lf~q~~~d~s-~~vr~~a~rA~~a~~~~~~~~~~~  196 (1075)
T KOG2171|consen  120 LQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLD--DLLRLFSQTMTDPS-SPVRVAAVRALGAFAEYLENNKSE  196 (1075)
T ss_pred             HHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHH--HHHHHHHHhccCCc-chHHHHHHHHHHHHHHHhccchHH
Confidence            445556667999999999999999886543222222222  25678888888888 459999999999988755433322


Q ss_pred             HHh-CCChHHHHHhh----CCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhcc-chhHhHHHHHHHHHHH
Q 014945          153 VID-HGAVPIFVRLL----SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE-HAKLSMLRNATWTLSN  226 (415)
Q Consensus       153 ~~~-~g~i~~L~~ll----~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~-~~~~~~~~~a~~~l~~  226 (415)
                      ... ...+|.++..+    ...+......++.+|..++...|.+-...+.. ++...+.+..+ .-+..++..|+.++..
T Consensus       197 ~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~-ii~~~l~Ia~n~~l~~~~R~~ALe~ivs  275 (1075)
T KOG2171|consen  197 VDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQ-IIQFSLEIAKNKELENSIRHLALEFLVS  275 (1075)
T ss_pred             HHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHH-HHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence            222 13456555554    44667777888889988887766543333321 44444444422 2356677777776666


Q ss_pred             hhhCCCCCc----------------------------------------------------------hhhhhchHHHHHH
Q 014945          227 FCRGKPQPL----------------------------------------------------------FEQTRPALPALER  248 (415)
Q Consensus       227 l~~~~~~~~----------------------------------------------------------~~~~~~~l~~l~~  248 (415)
                      +++..|...                                                          ......+++.+-.
T Consensus       276 ~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~  355 (1075)
T KOG2171|consen  276 LSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEA  355 (1075)
T ss_pred             HHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHH
Confidence            655411000                                                          0001234555666


Q ss_pred             hhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChH
Q 014945          249 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALP  328 (415)
Q Consensus       249 lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~  328 (415)
                      ++.+.+..-|..++.+|+.++.+..+.+...+ ..+++.++..|.++++.||-.||.++|.+++.-....+.-....+++
T Consensus       356 ~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~  434 (1075)
T KOG2171|consen  356 MLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPP  434 (1075)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccH
Confidence            77889999999999999999999887765544 35888899999999999999999999999998777777777778888


Q ss_pred             HHHHHhcCCCccchHHHHHHHHHHHhcC-CHHHHHHHHHcCCHH-HHHHHhccCCHHHHHHHHHHHHHHhCCCCHHHHHH
Q 014945          329 CLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIG-PLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY  406 (415)
Q Consensus       329 ~L~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~i~-~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~  406 (415)
                      .|+..+.+..+++|+..|+-++.|+... ..+.+...++. ++. .+..++.++.+.+++.+..+|+..+..+...+++|
T Consensus       435 aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~-lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY  513 (1075)
T KOG2171|consen  435 ALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDG-LMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPY  513 (1075)
T ss_pred             HHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHH-HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhH
Confidence            9999999987889999999999999985 44555555543 666 44455566889999999999999998888888777


Q ss_pred             H
Q 014945          407 K  407 (415)
Q Consensus       407 l  407 (415)
                      +
T Consensus       514 ~  514 (1075)
T KOG2171|consen  514 F  514 (1075)
T ss_pred             H
Confidence            6

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.68  E-value=5.7e-15  Score=140.09  Aligned_cols=279  Identities=19%  Similarity=0.225  Sum_probs=220.3

Q ss_pred             chHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCch--hH
Q 014945          115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK--CR  192 (415)
Q Consensus       115 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~--~~  192 (415)
                      -+|..+.+|.+.+ +.+|..|+.-+-.++.++.+.+..+.+.|+|+.|+.+|.+.+.+++.+|+|+|.||..+...  .+
T Consensus       234 ~lpe~i~mL~~q~-~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK  312 (717)
T KOG1048|consen  234 TLPEVISMLMSQD-PSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK  312 (717)
T ss_pred             ccHHHHHHHhccC-hhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence            4788899999988 99999999999999999999999999999999999999999999999999999999976654  67


Q ss_pred             HHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcC--------------CChhHH
Q 014945          193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS--------------NDDEVL  258 (415)
Q Consensus       193 ~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~--------------~d~~v~  258 (415)
                      -.+.+.++++.++++|....|.++++.++.+|+||+.. .......+...++.|...+-.              .+.++.
T Consensus       313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf  391 (717)
T KOG1048|consen  313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF  391 (717)
T ss_pred             hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceee
Confidence            78889999999999997778999999999999999988 344445556666666544311              135678


Q ss_pred             HHHHHHHHHhccCChHHHHHHHHc-CcHHHHHHhcC--------------------------------------------
Q 014945          259 TDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLR--------------------------------------------  293 (415)
Q Consensus       259 ~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~L~~lL~--------------------------------------------  293 (415)
                      .++..+|.|++....+..+.+.+. |.++.|+..+.                                            
T Consensus       392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~  471 (717)
T KOG1048|consen  392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR  471 (717)
T ss_pred             ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence            889999999987555555555443 55555554432                                            


Q ss_pred             ----------------------------------------------------------CCChhhHHHHHHHHHHhhcCCh
Q 014945          294 ----------------------------------------------------------HPSPSVLIPALRTVGNIVTGDD  315 (415)
Q Consensus       294 ----------------------------------------------------------~~~~~v~~~a~~~l~nl~~~~~  315 (415)
                                                                                +.++.+.+.++.+|.|++.+..
T Consensus       472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~  551 (717)
T KOG1048|consen  472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW  551 (717)
T ss_pred             cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence                                                                      0111255677778888877653


Q ss_pred             ----HHHHHH-HHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccC------CHHH
Q 014945          316 ----MQTQCI-INHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA------EFEI  384 (415)
Q Consensus       316 ----~~~~~~-~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~------~~~v  384 (415)
                          .....+ ....+++.|++++..+ ++.|.+.++.+|.|++.+-  ..+.++..++++.|++.|...      +.++
T Consensus       552 ~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~d~--rnk~ligk~a~~~lv~~Lp~~~~~~~~sedt  628 (717)
T KOG1048|consen  552 TWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSRDI--RNKELIGKYAIPDLVRCLPGSGPSTSLSEDT  628 (717)
T ss_pred             cchhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhccCc--hhhhhhhcchHHHHHHhCcCCCCCcCchHHH
Confidence                222333 4668899999999999 9999999999999999862  245677788999999999763      2588


Q ss_pred             HHHHHHHHHHHhCC
Q 014945          385 KKEAAWAISNATSG  398 (415)
Q Consensus       385 ~~~a~~aL~nl~~~  398 (415)
                      ...+|.+|.|+...
T Consensus       629 v~~vc~tl~niv~~  642 (717)
T KOG1048|consen  629 VRAVCHTLNNIVRK  642 (717)
T ss_pred             HHHHHHhHHHHHHH
Confidence            89999999999865

>PRK09687 putative lyase; Provisional

Probab=99.66  E-value=2.4e-14  Score=126.25  Aligned_cols=227  Identities=14%  Similarity=0.122  Sum_probs=180.3

Q ss_pred             chHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHH
Q 014945          115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL  194 (415)
Q Consensus       115 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~  194 (415)
                      -++.|..+|.+.+ ..++..|++.|..+...           .+++.+..++.++++.+|..++|+|+.|-.....    
T Consensus        24 ~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~~-----------~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~----   87 (280)
T PRK09687         24 NDDELFRLLDDHN-SLKRISSIRVLQLRGGQ-----------DVFRLAIELCSSKNPIERDIGADILSQLGMAKRC----   87 (280)
T ss_pred             cHHHHHHHHhCCC-HHHHHHHHHHHHhcCcc-----------hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----
Confidence            4688999999988 99999999999877642           3577888899999999999999999998543221    


Q ss_pred             HHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChH
Q 014945          195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND  274 (415)
Q Consensus       195 ~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~  274 (415)
                        ....++.|..++.+++++.++..++.+|.+++......    ...+++.+...+.++++.|+..++++|+.+..  + 
T Consensus        88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--~-  158 (280)
T PRK09687         88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND--E-  158 (280)
T ss_pred             --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--H-
Confidence              11255677777558889999999999999997543211    12355667777888899999999999987642  1 


Q ss_pred             HHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHh
Q 014945          275 KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT  354 (415)
Q Consensus       275 ~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~  354 (415)
                              ..++.|+.+|.++++.|+..|+.+||.+..+++         ..++.|+..+.+. ++.||..|+++|+.+-
T Consensus       159 --------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~-~~~VR~~A~~aLg~~~  220 (280)
T PRK09687        159 --------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK-NEEIRIEAIIGLALRK  220 (280)
T ss_pred             --------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC-ChHHHHHHHHHHHccC
Confidence                    257899999999999999999999999954443         3467799999998 9999999999999864


Q ss_pred             cCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhC
Q 014945          355 AGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  397 (415)
Q Consensus       355 ~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~  397 (415)
                        ++.         ++|.|++.+.+++  ++..|+.+|+++-.
T Consensus       221 --~~~---------av~~Li~~L~~~~--~~~~a~~ALg~ig~  250 (280)
T PRK09687        221 --DKR---------VLSVLIKELKKGT--VGDLIIEAAGELGD  250 (280)
T ss_pred             --Chh---------HHHHHHHHHcCCc--hHHHHHHHHHhcCC
Confidence              333         6888999998766  67789999998874

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.65  E-value=8.7e-14  Score=138.22  Aligned_cols=322  Identities=20%  Similarity=0.216  Sum_probs=229.8

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCC--ChHHHHHHHHHHHHHhCCCchh
Q 014945           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD--FPQLQFEAAWALTNIASGTSEN  149 (415)
Q Consensus        72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~--~~~i~~~a~~~L~~l~~~~~~~  149 (415)
                      ....++.++...|++   .-...|..+.+.  .+..-.+..+|.+|.|+++|.-++  +.+.+..|-.+|.||....++.
T Consensus       198 ts~sllsml~t~D~e---e~ar~fLemSss--~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~  272 (2195)
T KOG2122|consen  198 TSNSLLSMLGTDDEE---EMARTFLEMSSS--PESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDE  272 (2195)
T ss_pred             hhhHHhhhcccCCHH---HHHHHHHHhccC--chhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcch
Confidence            344666777766663   334555555332  355566889999999999998654  2678899999999999877776


Q ss_pred             hHHHHhCCChHHHH---H-------hhCC--------CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhc--
Q 014945          150 TRVVIDHGAVPIFV---R-------LLSS--------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN--  209 (415)
Q Consensus       150 ~~~~~~~g~i~~L~---~-------ll~~--------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~--  209 (415)
                      ...-.+..++..|-   .       ++..        ++.--...|+.+|..++.+.+ .|..+.+.|++..+-.++.  
T Consensus       273 kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEE-hR~aM~ELG~LqAIaeLl~vD  351 (2195)
T KOG2122|consen  273 KRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEE-HRHAMNELGGLQAIAELLQVD  351 (2195)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHH-HHHHHHHhhhHHHHHHHHHHH
Confidence            54433323333222   1       2221        111122367777777776655 7899999999999888763  


Q ss_pred             ---------cchhHhHHHHHHHHHHHhhhCC--CCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHH
Q 014945          210 ---------EHAKLSMLRNATWTLSNFCRGK--PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA  278 (415)
Q Consensus       210 ---------~~~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~  278 (415)
                               ......+++++..+|.||..++  .........+++..+|..|.+..+++..-...+|.||+...+.....
T Consensus       352 h~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKk  431 (2195)
T KOG2122|consen  352 HEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKK  431 (2195)
T ss_pred             HHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHH
Confidence                     1235678999999999999997  33344556899999999999888888888899999998765543333


Q ss_pred             HH-HcCc--------------------------------------------HHHHHHhcCCC----ChhhHHHHHHHHHH
Q 014945          279 VI-EAGV--------------------------------------------CPRLVELLRHP----SPSVLIPALRTVGN  309 (415)
Q Consensus       279 ~~-~~~~--------------------------------------------i~~L~~lL~~~----~~~v~~~a~~~l~n  309 (415)
                      ++ +.|-                                            +..|+.+|...    ...+.+.+-++|.|
T Consensus       432 vLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRN  511 (2195)
T KOG2122|consen  432 VLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRN  511 (2195)
T ss_pred             HHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHH
Confidence            32 2233                                            33344444322    12344444444444


Q ss_pred             hh---cCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHH
Q 014945          310 IV---TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKK  386 (415)
Q Consensus       310 l~---~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~  386 (415)
                      +.   ..++.+++.+.+++++..|+..|++. +-.+..++|.+|+||.+.+++..+.+++.|.++.|.+++.+.+..+..
T Consensus       512 VSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~-SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~  590 (2195)
T KOG2122|consen  512 VSSLIATCEDYRQILRRHNCLQTLLQHLKSH-SLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAM  590 (2195)
T ss_pred             HHhHhhccchHHHHHHHhhHHHHHHHHhhhc-ceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhh
Confidence            32   23345677777888999999999998 999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCC
Q 014945          387 EAAWAISNATSGGS  400 (415)
Q Consensus       387 ~a~~aL~nl~~~~~  400 (415)
                      -++.+|.|+...-+
T Consensus       591 GSaaALrNLln~RP  604 (2195)
T KOG2122|consen  591 GSAAALRNLLNFRP  604 (2195)
T ss_pred             hHHHHHHHHhcCCc
Confidence            99999999987654

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.64  E-value=2.3e-14  Score=142.25  Aligned_cols=265  Identities=20%  Similarity=0.181  Sum_probs=221.6

Q ss_pred             HHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCC--------C---ChHHHHHHHHHHHHHhCCCchhhHHHHh-CC
Q 014945           90 DATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD--------D---FPQLQFEAAWALTNIASGTSENTRVVID-HG  157 (415)
Q Consensus        90 ~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~--------~---~~~i~~~a~~~L~~l~~~~~~~~~~~~~-~g  157 (415)
                      .|+..|.++ +.+ .+..+.+-+.|++..+-+|+.-.        +   +..+|..|..+|+||..++..++..+.. -|
T Consensus       317 aA~~~lMK~-SFD-EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rg  394 (2195)
T KOG2122|consen  317 AALCTLMKL-SFD-EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRG  394 (2195)
T ss_pred             HHHHHHHHh-hcc-HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhh
Confidence            566777776 443 68888899999988888776531        1   2478999999999999998887776665 49


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhcC-CCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC--CCC
Q 014945          158 AVPIFVRLLSSPTDDVREQAVWALGNVAG-DSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK--PQP  234 (415)
Q Consensus       158 ~i~~L~~ll~~~~~~v~~~a~~~L~nl~~-~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~--~~~  234 (415)
                      ++..++..|.+..+++.+....+|.||+= -+...+..+-+.|.+..|...-.....+..+..++.+|+||+.+-  ...
T Consensus       395 fMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA  474 (2195)
T KOG2122|consen  395 FMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKA  474 (2195)
T ss_pred             HHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccch
Confidence            99999999999888999999999999983 223356677788889999888657777788899999999999876  455


Q ss_pred             chhhhhchHHHHHHhhcCC----ChhHHHHHHHHHHHhcc---CChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHH
Q 014945          235 LFEQTRPALPALERLIHSN----DDEVLTDACWALSYLSD---GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV  307 (415)
Q Consensus       235 ~~~~~~~~l~~l~~lL~~~----d~~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l  307 (415)
                      .+..+.|++-+|+.+|...    .-.|++.+-.+|.|++.   ..+...+.+.+.+++..|++.|++.+-.+...+|++|
T Consensus       475 ~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTL  554 (2195)
T KOG2122|consen  475 EICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTL  554 (2195)
T ss_pred             hhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhh
Confidence            6777899999999999654    35678888888887764   3455667788999999999999999999999999999


Q ss_pred             HHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCC
Q 014945          308 GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN  357 (415)
Q Consensus       308 ~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~  357 (415)
                      +||...+++..+.+++.|+++.|..++.+. +..+...++.+|.|+...-
T Consensus       555 WNLSAR~p~DQq~LwD~gAv~mLrnLIhSK-hkMIa~GSaaALrNLln~R  603 (2195)
T KOG2122|consen  555 WNLSARSPEDQQMLWDDGAVPMLRNLIHSK-HKMIAMGSAAALRNLLNFR  603 (2195)
T ss_pred             hhhhcCCHHHHHHHHhcccHHHHHHHHhhh-hhhhhhhHHHHHHHHhcCC
Confidence            999999999999999999999999999998 9999999999999999864

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.63  E-value=2.2e-14  Score=126.53  Aligned_cols=309  Identities=16%  Similarity=0.156  Sum_probs=224.8

Q ss_pred             CHHHHHHHHHHHHHHhccC--CCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHH
Q 014945           84 DRNIQLDATTQFRKLLSIE--RSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPI  161 (415)
Q Consensus        84 ~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~  161 (415)
                      +..+...+..++......+  ++.....-++.+++..|.+..++++ .++..+..++|+|+|.++.+.|..+.+.|+-..
T Consensus        55 ~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqi  133 (604)
T KOG4500|consen   55 SDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLGGAQI  133 (604)
T ss_pred             cchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcCCcee
Confidence            3444455555555553211  1111223356778888999999887 899999999999999999999999999999888


Q ss_pred             HHHhhCC-------CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhc-cchhHhHHHHHHHHHHHhhhCCCC
Q 014945          162 FVRLLSS-------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN-EHAKLSMLRNATWTLSNFCRGKPQ  233 (415)
Q Consensus       162 L~~ll~~-------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~-~~~~~~~~~~a~~~l~~l~~~~~~  233 (415)
                      ++++|+.       .+.+....+...|.|..-++...+..+.+.|+++.|...+. ..++....+.....+.|+.+-...
T Consensus       134 vid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e  213 (604)
T KOG4500|consen  134 VIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCE  213 (604)
T ss_pred             hHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHH
Confidence            8888764       23567778889999999999999999999999999988863 344555556555555555433211


Q ss_pred             --CchhhhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCC-CC-------hhhHHH
Q 014945          234 --PLFEQTRPALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PS-------PSVLIP  302 (415)
Q Consensus       234 --~~~~~~~~~l~~l~~lL~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~-------~~v~~~  302 (415)
                        .++.....+.-.+++++... ++++.+-+...+...+.++.-.. .+.+.|.+..++.++.. .+       -.....
T Consensus       214 ~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl-~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~  292 (604)
T KOG4500|consen  214 MLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKL-SLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKR  292 (604)
T ss_pred             hhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceee-ehhhcchHHHHHHHHHhcccccchHHHHHHHHh
Confidence              22222334444556666443 56677777888888887766543 37788999998888854 11       123344


Q ss_pred             HHHHHHHhhcCChHHHHHHHHCC-ChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc--
Q 014945          303 ALRTVGNIVTGDDMQTQCIINHQ-ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN--  379 (415)
Q Consensus       303 a~~~l~nl~~~~~~~~~~~~~~~-~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~--  379 (415)
                      ++..+.-+..|++ ..+.+...+ +++.+...+.+. +....-.+..+++|++..+.. ..+++++|++..|++++..  
T Consensus       293 ~~el~vllltGDe-SMq~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D~~-ci~~v~~~~~nkL~~~l~~~~  369 (604)
T KOG4500|consen  293 IAELDVLLLTGDE-SMQKLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARRDDI-CIQLVQKDFLNKLISCLMQEK  369 (604)
T ss_pred             hhhHhhhhhcCch-HHHHHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhccchH-HHHHHHHHHHHHHHHHHHHhc
Confidence            5555555666655 556666665 899999999999 999999999999999996544 5688899999999999864  


Q ss_pred             ---CCHHHHHHHHHHHHHHhC
Q 014945          380 ---AEFEIKKEAAWAISNATS  397 (415)
Q Consensus       380 ---~~~~v~~~a~~aL~nl~~  397 (415)
                         ++.+++..++.||.|+.-
T Consensus       370 ~vdgnV~~qhA~lsALRnl~I  390 (604)
T KOG4500|consen  370 DVDGNVERQHACLSALRNLMI  390 (604)
T ss_pred             CCCccchhHHHHHHHHHhccc
Confidence               678899999999999974

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.62  E-value=5.3e-13  Score=117.90  Aligned_cols=324  Identities=13%  Similarity=0.054  Sum_probs=246.5

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCC---C---ChHHHHHHHHHHHHHhC
Q 014945           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD---D---FPQLQFEAAWALTNIAS  144 (415)
Q Consensus        71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~---~---~~~i~~~a~~~L~~l~~  144 (415)
                      +.+..|.+...|+|.++-.+..++|.++...+ ++....+.+.|+-..++..|+..   +   +.+....+...|.|..-
T Consensus        87 ~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn-~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l  165 (604)
T KOG4500|consen   87 EALELLRQTPSSPDTEVHEQCFRALGNICYDN-NENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL  165 (604)
T ss_pred             HHHHHHHhCCCCCcccHHHHHHHHHhhhhccC-chhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence            46677888888888899999999999997765 88888899999977777777642   1   24566667788999999


Q ss_pred             CCchhhHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhcCC-CchhHHHHHhcCChHHHHHHhccchhHhHHHHHH
Q 014945          145 GTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGD-SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNAT  221 (415)
Q Consensus       145 ~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~  221 (415)
                      ++.+.+..+.+.|+++.|...+.-  .+....+..+-..+|+.+- .+...+..........+++++....++++.+.+.
T Consensus       166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f  245 (604)
T KOG4500|consen  166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF  245 (604)
T ss_pred             CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence            999999999999999999887653  5667777777777777632 2223345556666778888886667888899999


Q ss_pred             HHHHHhhhCCCCCchhhhhchHHHHHHhhcC-CC-------hhHHHHHHHHHHHhccCChHHHHHHHHcC-cHHHHHHhc
Q 014945          222 WTLSNFCRGKPQPLFEQTRPALPALERLIHS-ND-------DEVLTDACWALSYLSDGTNDKIQAVIEAG-VCPRLVELL  292 (415)
Q Consensus       222 ~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~-~d-------~~v~~~a~~~l~~l~~~~~~~~~~~~~~~-~i~~L~~lL  292 (415)
                      ..+...++++...-.....|.+..+..+++. .+       -.....++....-+..+++.. +.+...+ +++.+.+++
T Consensus       246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSM-q~L~~~p~~l~~~~sw~  324 (604)
T KOG4500|consen  246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESM-QKLHADPQFLDFLESWF  324 (604)
T ss_pred             HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHH-HHHhcCcHHHHHHHHHh
Confidence            9999998886555455556777777777754 22       223344555555555666554 5666666 899999999


Q ss_pred             CCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCC----CccchHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 014945          293 RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN----YKKSIKKEACWTISNITAGNVNQIQAIIEAG  368 (415)
Q Consensus       293 ~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~----~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~  368 (415)
                      .+++......+.-+|||++..++.. ..+++.+++..|+.++...    .+.+++..++.+|.|++--- .+...++..|
T Consensus       325 ~S~d~~l~t~g~LaigNfaR~D~~c-i~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv-~nka~~~~aG  402 (604)
T KOG4500|consen  325 RSDDSNLITMGSLAIGNFARRDDIC-IQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPV-SNKAHFAPAG  402 (604)
T ss_pred             cCCchhHHHHHHHHHHhhhccchHH-HHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccC-Cchhhccccc
Confidence            9999999999999999999977644 4588889999999988542    15567788899999999742 3356788999


Q ss_pred             CHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945          369 IIGPLVNLLLNAEFEIKKEAAWAISNATSG  398 (415)
Q Consensus       369 ~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~  398 (415)
                      +.+.++..++...|.+...-...+.-+..+
T Consensus       403 vteaIL~~lk~~~ppv~fkllgTlrM~~d~  432 (604)
T KOG4500|consen  403 VTEAILLQLKLASPPVTFKLLGTLRMIRDS  432 (604)
T ss_pred             hHHHHHHHHHhcCCcchHHHHHHHHHHHhc
Confidence            999999999998888887777766665544

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.61  E-value=1.2e-13  Score=118.94  Aligned_cols=196  Identities=19%  Similarity=0.233  Sum_probs=162.8

Q ss_pred             HhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCch
Q 014945          111 IQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK  190 (415)
Q Consensus       111 ~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~  190 (415)
                      .+.+-++.|+.+|+...++.++..++.++++.+.. +..+..+.+.|+++.+..++.++++.+++.|+++|.|++.+.+ 
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e-   86 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE-   86 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh-
Confidence            55667899999999765599999999999998774 8899999999999999999999999999999999999998776 


Q ss_pred             hHHHHHhcCChHHHHHHhccc-hhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 014945          191 CRDLVLSNGALMPLLAQFNEH-AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS  269 (415)
Q Consensus       191 ~~~~~~~~g~i~~L~~~l~~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~  269 (415)
                      .+..+-.  .++.++..+... -+..++..++.+|.+++.....  ...+...+|.++.+|.+++..++..++++|.+|+
T Consensus        87 n~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS  162 (254)
T PF04826_consen   87 NQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLS  162 (254)
T ss_pred             hHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence            3444432  466666654333 4788999999999999866322  3334678999999999999999999999999999


Q ss_pred             cCChHHHHHHHHcCcHHHHHHhcCCC-ChhhHHHHHHHHHHhhcC
Q 014945          270 DGTNDKIQAVIEAGVCPRLVELLRHP-SPSVLIPALRTVGNIVTG  313 (415)
Q Consensus       270 ~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~l~nl~~~  313 (415)
                      ..+.. ...++..+++..++.++..+ +..+...++..+.||..+
T Consensus       163 ~np~~-~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~  206 (254)
T PF04826_consen  163 ENPDM-TRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN  206 (254)
T ss_pred             cCHHH-HHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence            87664 46688889999999999765 578899999999999654

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.61  E-value=2.8e-14  Score=110.50  Aligned_cols=118  Identities=34%  Similarity=0.507  Sum_probs=111.2

Q ss_pred             HHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCH
Q 014945          279 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV  358 (415)
Q Consensus       279 ~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~  358 (415)
                      +++.|+++.++++|.+.++.++..++++|++++...+.....+++.|+++.+.+++.++ ++.++..++|+|+|++.+.+
T Consensus         3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~   81 (120)
T cd00020           3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPE   81 (120)
T ss_pred             HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcH
Confidence            56789999999999999999999999999999999888888899999999999999998 99999999999999999888


Q ss_pred             HHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhC
Q 014945          359 NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  397 (415)
Q Consensus       359 ~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~  397 (415)
                      .....+.+.|+++.|++++.+++.+++..|+|+|.|++.
T Consensus        82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence            888888899999999999999999999999999999873

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.60  E-value=7.4e-13  Score=130.41  Aligned_cols=327  Identities=15%  Similarity=0.145  Sum_probs=228.9

Q ss_pred             HHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHH
Q 014945           74 PAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV  152 (415)
Q Consensus        74 ~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~  152 (415)
                      ..++..+.+ ..+.++..-+..+..+++..-.+     --.++++.|.+..++++ +..|+.|+.+|..+...-...-.-
T Consensus        82 s~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-----~WPell~~L~q~~~S~~-~~~rE~al~il~s~~~~~~~~~~~  155 (1075)
T KOG2171|consen   82 SSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-----KWPELLQFLFQSTKSPN-PSLRESALLILSSLPETFGNTLQP  155 (1075)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-----chHHHHHHHHHHhcCCC-cchhHHHHHHHHhhhhhhccccch
Confidence            456666665 45677888888888887654122     22357889999999999 999999999999988642222111


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCc---hhHHHHHhcCChHHHHHHhc---cchhHhHHHHHHHHHHH
Q 014945          153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP---KCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSN  226 (415)
Q Consensus       153 ~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~---~~~~~~~~~g~i~~L~~~l~---~~~~~~~~~~a~~~l~~  226 (415)
                      .+. .+.+.+.+.+.+++..++..++.+++.++...+   ..++.+..  .+|.++..+.   +..+.+....+..++..
T Consensus       156 ~~~-~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~--llP~~l~vl~~~i~~~d~~~a~~~l~~l~E  232 (1075)
T KOG2171|consen  156 HLD-DLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRD--LLPSLLNVLQEVIQDGDDDAAKSALEALIE  232 (1075)
T ss_pred             hHH-HHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHH--HhHHHHHHhHhhhhccchHHHHHHHHHHHH
Confidence            111 234555556666666699999999999985443   22233322  5666777663   34466667778888888


Q ss_pred             hhhCCCCCchhhhhchHHHHHHhhcCC--ChhHHHHHHHHHHHhccCChHHHH---------------------------
Q 014945          227 FCRGKPQPLFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSDGTNDKIQ---------------------------  277 (415)
Q Consensus       227 l~~~~~~~~~~~~~~~l~~l~~lL~~~--d~~v~~~a~~~l~~l~~~~~~~~~---------------------------  277 (415)
                      +....|..-......++........+.  ++.+|..|+..|..++...+...+                           
T Consensus       233 l~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~  312 (1075)
T KOG2171|consen  233 LLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWS  312 (1075)
T ss_pred             HHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhc
Confidence            887765544445555555555555544  566777777766655542111000                           


Q ss_pred             ------------------HHHH--------c----CcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCCh
Q 014945          278 ------------------AVIE--------A----GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQAL  327 (415)
Q Consensus       278 ------------------~~~~--------~----~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l  327 (415)
                                        ..++        .    -+++.+-.+|.+++|.-|..++.+|+.++.|..+.....++ .++
T Consensus       313 ~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il  391 (1075)
T KOG2171|consen  313 NEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KIL  391 (1075)
T ss_pred             cccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHH
Confidence                              0000        0    12344555567899999999999999999999887776555 788


Q ss_pred             HHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHHHHHHHHHhCCCCHHHH-H
Q 014945          328 PCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNATSGGSNEQI-K  405 (415)
Q Consensus       328 ~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~-~~~~v~~~a~~aL~nl~~~~~~~~~-~  405 (415)
                      +.++..++++ +|+||..||.+++.++.+-...++.-...-+++.|+..+++ .+++|+..|+.|+.|++..++.+.+ +
T Consensus       392 ~~Vl~~l~Dp-hprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~p  470 (1075)
T KOG2171|consen  392 PIVLNGLNDP-HPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEP  470 (1075)
T ss_pred             HHHHhhcCCC-CHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            9999999999 99999999999999999766667777777789999999987 5689999999999999999987777 7


Q ss_pred             HHHHHh
Q 014945          406 YKFFYV  411 (415)
Q Consensus       406 ~l~~~~  411 (415)
                      ||+.++
T Consensus       471 YLd~lm  476 (1075)
T KOG2171|consen  471 YLDGLM  476 (1075)
T ss_pred             HHHHHH
Confidence            774433

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.58  E-value=1.4e-12  Score=133.97  Aligned_cols=259  Identities=19%  Similarity=0.199  Sum_probs=167.9

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (415)
Q Consensus        72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  151 (415)
                      .++.|+..|.++|+.++..|+..|..+..            .+.++.|+..|++++ +.++..|+..|..+....+    
T Consensus       622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~~----  684 (897)
T PRK13800        622 SVAELAPYLADPDPGVRRTAVAVLTETTP------------PGFGPALVAALGDGA-AAVRRAAAEGLRELVEVLP----  684 (897)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHhhhcc------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhccC----
Confidence            46789999999999999999999988632            235788999998888 8999999999988753211    


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCc------------hhHHH----HHhcCChHHHHHHhccchhHh
Q 014945          152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP------------KCRDL----VLSNGALMPLLAQFNEHAKLS  215 (415)
Q Consensus       152 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~------------~~~~~----~~~~g~i~~L~~~l~~~~~~~  215 (415)
                            ..+.|...|.++++.++..++.+|+.+....+            ..|..    +...+..+.|...+ .+++..
T Consensus       685 ------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l-~D~~~~  757 (897)
T PRK13800        685 ------PAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAA-TDENRE  757 (897)
T ss_pred             ------chHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHh-cCCCHH
Confidence                  12345555555666666666666655431111            00000    00001122333444 445555


Q ss_pred             HHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCC
Q 014945          216 MLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP  295 (415)
Q Consensus       216 ~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~  295 (415)
                      ++..++.+|..+....        ...++.|..+++++|+.|+..++.+|+.+.....          +.+.+...|.++
T Consensus       758 VR~~aa~aL~~~~~~~--------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~----------~~~~l~~aL~d~  819 (897)
T PRK13800        758 VRIAVAKGLATLGAGG--------APAGDAVRALTGDPDPLVRAAALAALAELGCPPD----------DVAAATAALRAS  819 (897)
T ss_pred             HHHHHHHHHHHhcccc--------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcch----------hHHHHHHHhcCC
Confidence            5555555555554321        1225666777777777777777777777643211          124566777777


Q ss_pred             ChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHH
Q 014945          296 SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVN  375 (415)
Q Consensus       296 ~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~  375 (415)
                      ++.||..|+.+|+.+...           ..++.|..+|.++ ++.||..|+++|+.+ .+++.         ..+.|..
T Consensus       820 d~~VR~~Aa~aL~~l~~~-----------~a~~~L~~~L~D~-~~~VR~~A~~aL~~~-~~~~~---------a~~~L~~  877 (897)
T PRK13800        820 AWQVRQGAARALAGAAAD-----------VAVPALVEALTDP-HLDVRKAAVLALTRW-PGDPA---------ARDALTT  877 (897)
T ss_pred             ChHHHHHHHHHHHhcccc-----------chHHHHHHHhcCC-CHHHHHHHHHHHhcc-CCCHH---------HHHHHHH
Confidence            788888888888776421           2357888888888 889999999999886 23343         3566677


Q ss_pred             HhccCCHHHHHHHHHHHHH
Q 014945          376 LLLNAEFEIKKEAAWAISN  394 (415)
Q Consensus       376 ~l~~~~~~v~~~a~~aL~n  394 (415)
                      .+++++.+||..|..+|..
T Consensus       878 al~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        878 ALTDSDADVRAYARRALAH  896 (897)
T ss_pred             HHhCCCHHHHHHHHHHHhh
Confidence            8888899999999988864

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.58  E-value=6.2e-14  Score=108.58  Aligned_cols=119  Identities=35%  Similarity=0.621  Sum_probs=110.9

Q ss_pred             HHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC
Q 014945          109 EVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS  188 (415)
Q Consensus       109 ~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~  188 (415)
                      .+++.|+++.|++++.+++ +.++..++++|++++.++++....+.+.|+++.++.++.++++.++..++|+|+||+.+.
T Consensus         2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~   80 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP   80 (120)
T ss_pred             hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence            4668899999999999988 899999999999999988899999999999999999999999999999999999999998


Q ss_pred             chhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhh
Q 014945          189 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  229 (415)
Q Consensus       189 ~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~  229 (415)
                      +..+..+...|+++.++..+ .+.+..+++.++|++.+++.
T Consensus        81 ~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          81 EDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence            87888889999999999999 66688999999999999873

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.57  E-value=4.4e-13  Score=115.51  Aligned_cols=226  Identities=20%  Similarity=0.232  Sum_probs=175.4

Q ss_pred             HhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCC
Q 014945          154 IDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP  232 (415)
Q Consensus       154 ~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~  232 (415)
                      .+.+-++.|+.+|+. .++.+++.++.+++|.+..+. .++.+.+.|+++.+..++ +++++.++..|++++.|++...+
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~-nq~~Ir~~Ggi~lI~~lL-~~p~~~vr~~AL~aL~Nls~~~e   86 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPF-NQDIIRDLGGISLIGSLL-NDPNPSVREKALNALNNLSVNDE   86 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChh-HHHHHHHcCCHHHHHHHc-CCCChHHHHHHHHHHHhcCCChh
Confidence            455678999999985 689999999999999876664 789999999999999999 78899999999999999987743


Q ss_pred             CCchhhhhchHHHHHHhhcC--CChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHh
Q 014945          233 QPLFEQTRPALPALERLIHS--NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI  310 (415)
Q Consensus       233 ~~~~~~~~~~l~~l~~lL~~--~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl  310 (415)
                      ...  .+...++.+.+.+.+  -|..++..++++|.+++..++.  +.++ .+.++.++.+|.+++..++..++++|.|+
T Consensus        87 n~~--~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l-~~~i~~ll~LL~~G~~~~k~~vLk~L~nL  161 (254)
T PF04826_consen   87 NQE--QIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHML-ANYIPDLLSLLSSGSEKTKVQVLKVLVNL  161 (254)
T ss_pred             hHH--HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhH-HhhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence            322  334567766665443  3788999999999999866543  3344 34689999999999999999999999999


Q ss_pred             hcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcC--CH-----------HHHHHHH-Hc-CCHHHHHH
Q 014945          311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG--NV-----------NQIQAII-EA-GIIGPLVN  375 (415)
Q Consensus       311 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~--~~-----------~~~~~l~-~~-~~i~~L~~  375 (415)
                      +..++ .+..++..+++..++.+++...+.++...+.+.+.||..+  .+           +....++ +. .+...|..
T Consensus       162 S~np~-~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~  240 (254)
T PF04826_consen  162 SENPD-MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQA  240 (254)
T ss_pred             ccCHH-HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHH
Confidence            98654 6778899999999999998876788899999999999653  11           1111111 11 24556666


Q ss_pred             HhccCCHHHHHH
Q 014945          376 LLLNAEFEIKKE  387 (415)
Q Consensus       376 ~l~~~~~~v~~~  387 (415)
                      +..++|++|+..
T Consensus       241 l~~h~d~ev~~~  252 (254)
T PF04826_consen  241 LANHPDPEVKEQ  252 (254)
T ss_pred             HHcCCCHHHhhh
Confidence            666677777654

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.53  E-value=2.3e-11  Score=111.61  Aligned_cols=321  Identities=12%  Similarity=0.086  Sum_probs=225.8

Q ss_pred             cHHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHHh-----cCchHHHHHhhcCCCChHHHHHHHHHHHHHhCC
Q 014945           72 SLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQ-----SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASG  145 (415)
Q Consensus        72 ~i~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-----~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~  145 (415)
                      ....+++++.. ..++.....+..+..++... +.....+.+     .+....++.+|..++ .-+...|+.+|+.++..
T Consensus        54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~-~~~~~~f~~~~~~~~~~~~~fl~lL~~~d-~~i~~~a~~iLt~l~~~  131 (429)
T cd00256          54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQED-DTRVKLFHDDALLKKKTWEPFFNLLNRQD-QFIVHMSFSILAKLACF  131 (429)
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-hHHHHHHHHHhhccccchHHHHHHHcCCc-hhHHHHHHHHHHHHHhc
Confidence            45667777774 56778888888888888753 333444554     356778888998877 88999999999998875


Q ss_pred             CchhhHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccch-hHhHHHHHHHH
Q 014945          146 TSENTRVVIDHGAVPIFVRLLSSP-TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA-KLSMLRNATWT  223 (415)
Q Consensus       146 ~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~-~~~~~~~a~~~  223 (415)
                      ++.........-.++.+...+.++ +...+..|+.+|..+....+ +|..+.+.++++.|+.+|.... +.+++..++.+
T Consensus       132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~-~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~  210 (429)
T cd00256         132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDE-YRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFC  210 (429)
T ss_pred             CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCch-HHHHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence            443222111111334455556543 46678889999999987776 7888989999999999996544 67899999999


Q ss_pred             HHHhhhCCCCCchhhhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccCC------hHHHHHHHHcCcHHHHHHhcCC--
Q 014945          224 LSNFCRGKPQPLFEQTRPALPALERLIHSN-DDEVLTDACWALSYLSDGT------NDKIQAVIEAGVCPRLVELLRH--  294 (415)
Q Consensus       224 l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~-d~~v~~~a~~~l~~l~~~~------~~~~~~~~~~~~i~~L~~lL~~--  294 (415)
                      ++-++...+........+++|.++.+++.. -++|..-++.++.|+...+      ......+++.|+.+ ++..|..  
T Consensus       211 lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~rk  289 (429)
T cd00256         211 IWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLEQRK  289 (429)
T ss_pred             HHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHhcCC
Confidence            999988754333334468999999999765 5778889999999998643      22334577777755 4444432  


Q ss_pred             -CChhhHHHHHHHHHHhh-------cCCh------------------------HHHHHHHHC--CChHHHHHHhcCCCcc
Q 014945          295 -PSPSVLIPALRTVGNIV-------TGDD------------------------MQTQCIINH--QALPCLLDLLTQNYKK  340 (415)
Q Consensus       295 -~~~~v~~~a~~~l~nl~-------~~~~------------------------~~~~~~~~~--~~l~~L~~ll~~~~~~  340 (415)
                       .|+++.. .+..|....       +..+                        ++...+-+.  .++..|..+|..+.++
T Consensus       290 ~~DedL~e-dl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~  368 (429)
T cd00256         290 YDDEDLTD-DLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDP  368 (429)
T ss_pred             CCcHHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCc
Confidence             2333322 111211111       0111                        222222232  3578899999655488


Q ss_pred             chHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhC
Q 014945          341 SIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  397 (415)
Q Consensus       341 ~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~  397 (415)
                      .+..-||.=++.++...|..+..+-+.|+=..++++|.++|++|+.+|+.|+..+..
T Consensus       369 ~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~  425 (429)
T cd00256         369 IILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV  425 (429)
T ss_pred             ceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999888877777788999999999999999999999999987743

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.52  E-value=4.7e-13  Score=124.03  Aligned_cols=308  Identities=14%  Similarity=0.148  Sum_probs=211.4

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHh
Q 014945           76 MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVID  155 (415)
Q Consensus        76 l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~  155 (415)
                      .++.+...++-++-..-..+..+++...-...     ..++|.|.++|.+++ ...+..|..+|..++.++++.-+.-..
T Consensus        95 ~l~~lgd~~~lIr~tvGivITTI~s~~~~~~w-----pelLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~~  168 (885)
T KOG2023|consen   95 CLHGLGDASPLIRATVGIVITTIASTGGLQHW-----PELLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDVL  168 (885)
T ss_pred             HHhhccCchHHHHhhhhheeeeeecccccccc-----hhHHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhcc
Confidence            44455555554443344445555543321111     346899999999998 889999999999999987766544222


Q ss_pred             ----CCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC
Q 014945          156 ----HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK  231 (415)
Q Consensus       156 ----~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~  231 (415)
                          .-.+|.++++.+++++.+|..|+.|+..+....+..-..-++ .+++.+..+- .+.+++++++.|.++..|....
T Consensus       169 ~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD-~Fle~lFala-nD~~~eVRk~vC~alv~Llevr  246 (885)
T KOG2023|consen  169 TRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHID-KFLEILFALA-NDEDPEVRKNVCRALVFLLEVR  246 (885)
T ss_pred             cCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHH-HHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHhc
Confidence                136899999999999999999999999988665532111111 1445555555 7889999999999999999887


Q ss_pred             CCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHH--cCcHHHHHHhcCCCC-------------
Q 014945          232 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE--AGVCPRLVELLRHPS-------------  296 (415)
Q Consensus       232 ~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~--~~~i~~L~~lL~~~~-------------  296 (415)
                      +..-.....++++.+++..++.|++|.-.||.....++..+.. ...+..  ..++|.|++-+...+             
T Consensus       247 ~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~-~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~  325 (885)
T KOG2023|consen  247 PDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPIC-KEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDE  325 (885)
T ss_pred             HHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCc-HHHHHHHHHHHHHHHHccCccccccHHHhcCccccc
Confidence            7777777788889999888999999999999999888876532 121211  145555555442110             


Q ss_pred             -------------------------------------------hhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHH
Q 014945          297 -------------------------------------------PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL  333 (415)
Q Consensus       297 -------------------------------------------~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~l  333 (415)
                                                                 |.+|.....+|.-++.-..   +.++. -++|.|-..
T Consensus       326 ~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~---~elL~-~l~PlLk~~  401 (885)
T KOG2023|consen  326 SVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFG---DELLP-ILLPLLKEH  401 (885)
T ss_pred             cCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhH---HHHHH-HHHHHHHHH
Confidence                                                       3344443333333332111   11222 345666666


Q ss_pred             hcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945          334 LTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG  398 (415)
Q Consensus       334 l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~  398 (415)
                      |.+. +..+|+.+..+++.|+.|+-...-.-+. .++|.|+.+|.+..+-||...||+|+..+..
T Consensus       402 L~~~-~W~vrEagvLAlGAIAEGcM~g~~p~Lp-eLip~l~~~L~DKkplVRsITCWTLsRys~w  464 (885)
T KOG2023|consen  402 LSSE-EWKVREAGVLALGAIAEGCMQGFVPHLP-ELIPFLLSLLDDKKPLVRSITCWTLSRYSKW  464 (885)
T ss_pred             cCcc-hhhhhhhhHHHHHHHHHHHhhhcccchH-HHHHHHHHHhccCccceeeeeeeeHhhhhhh
Confidence            7777 8999999999999999875443322222 3799999999999999999999999998754

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.51  E-value=4.1e-11  Score=107.57  Aligned_cols=319  Identities=13%  Similarity=0.144  Sum_probs=236.6

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh
Q 014945           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  150 (415)
Q Consensus        71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  150 (415)
                      ..+..|++.|..++.++.......|.++.-.  .++...+.+.|++..|++++...+ ++++..++..+.|++.+ ...+
T Consensus       304 niV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf--~eNK~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSFD-~glr  379 (791)
T KOG1222|consen  304 NIVAMLVKALDRSNSSLLTLVIKFLKKLSIF--DENKIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSFD-SGLR  379 (791)
T ss_pred             hHHHHHHHHHcccchHHHHHHHHHHHHhhhh--ccchHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhcccc-cccc
Confidence            3567899999988888888888888887443  467778889999999999999999 99999999999999996 6678


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhC
Q 014945          151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  230 (415)
Q Consensus       151 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~  230 (415)
                      ..++..|.+|.+..++.++..  ...|+..+..++.++. .+.++.....++.+...+....+..+-...+...-|+|..
T Consensus       380 ~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~-~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~ln  456 (791)
T KOG1222|consen  380 PKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDD-AKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLN  456 (791)
T ss_pred             HHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcH-HHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhc
Confidence            889999999999999987543  3468888899988776 6778887788888887765555555544444444556544


Q ss_pred             CCCCchhh-------------------------------------hhchHHHHHHhhcC-CChhHHHHHHHHHHHhccCC
Q 014945          231 KPQPLFEQ-------------------------------------TRPALPALERLIHS-NDDEVLTDACWALSYLSDGT  272 (415)
Q Consensus       231 ~~~~~~~~-------------------------------------~~~~l~~l~~lL~~-~d~~v~~~a~~~l~~l~~~~  272 (415)
                      ....+...                                     .-..+.-|...+.. +++.....++.+++++.-.+
T Consensus       457 kRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~d  536 (791)
T KOG1222|consen  457 KRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTD  536 (791)
T ss_pred             cccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCC
Confidence            32222110                                     01111222233333 34667788889999998766


Q ss_pred             hHHHHHHHHcCcHHHHHHhcCCC--ChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCC-CccchHHHHHHH
Q 014945          273 NDKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-YKKSIKKEACWT  349 (415)
Q Consensus       273 ~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~v~~~a~~~  349 (415)
                      -+....+-+.+.+|.+-..|...  ..++......++|.++... .....+..+|+++.++++|+.. ++.+......++
T Consensus       537 ldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~-~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyV  615 (791)
T KOG1222|consen  537 LDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDL-DCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYV  615 (791)
T ss_pred             CCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhh-HHHHHhCccccHHHHHHHHHhhcccchHHHHHHHH
Confidence            55656566778999999998653  3456677777888887643 3556666779999999999764 266777888888


Q ss_pred             HHHHhcCCHHHHHHHH-HcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945          350 ISNITAGNVNQIQAII-EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG  398 (415)
Q Consensus       350 l~nl~~~~~~~~~~l~-~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~  398 (415)
                      +..+..+ ...+..++ +...-..|++++.+.+.++|+.+-.+|--++.+
T Consensus       616 F~Q~l~H-e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~  664 (791)
T KOG1222|consen  616 FLQFLKH-ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEH  664 (791)
T ss_pred             HHHHHHH-HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence            8888876 44455666 455677899999999999999999999988877

>PF01749 IBB: Importin beta binding domain; InterPro: IPR002652 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=99.48  E-value=1.1e-14  Score=105.73  Aligned_cols=88  Identities=45%  Similarity=0.623  Sum_probs=60.2

Q ss_pred             CCccHHHhhhccC-CCCchHHHHhHHHHHHHHHHHhhhHHHHhhhhccccCCCCCC----ch-hhhhhhhhccHHHHHHh
Q 014945            6 NARTEVRRSKYKV-AVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLT----NS-AALDNKKLESLPAMVAG   79 (415)
Q Consensus         6 ~~~~~~~~~~~k~-~~~~~~~r~~r~~~~~~lRk~~r~~~~~~~R~~~~~~~~~~~----~~-~~~~~~~~~~i~~l~~~   79 (415)
                      ....+.|++.||+ |++++|+|+||+++.++|||+||+|.|.|||++.......++    .. ..........++.++..
T Consensus         3 ~~~~~~R~~~yK~~g~d~~e~RrrRee~~veLRK~KReE~l~KRRn~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~   82 (97)
T PF01749_consen    3 SKKPENRRKSYKNKGKDAEEMRRRREEEQVELRKQKREEQLQKRRNINMADEESSSEESESDQNSSAQQLNEELPEMVAG   82 (97)
T ss_dssp             ----GGGGGGSTTTT-SHHHHHHHCCCCHHHHCHHHHHCCHSCCHT-----------------TCCCCS--HHHHHHHHH
T ss_pred             ccCHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccccccccccccccccccHHHHHh
Confidence            3467889999999 699999999999999999999999999999998654433211    00 01112223467889999


Q ss_pred             hcCCCHHHHHHHHH
Q 014945           80 VWSDDRNIQLDATT   93 (415)
Q Consensus        80 l~~~~~~~~~~a~~   93 (415)
                      +.|+|+..++.|..
T Consensus        83 v~S~d~~~ql~Atq   96 (97)
T PF01749_consen   83 VNSDDPEVQLEATQ   96 (97)
T ss_dssp             HTSSCHHHHHHHHH
T ss_pred             cCCCCHHHHHHhhC
Confidence            99999999998875

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. Members of the importin-alpha (karyopherin-alpha) family can form heterodimers with importin-beta. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Proteins can contain one (monopartite) or two (bipartite) NLS motifs. Importin-alpha contains several armadillo (ARM) repeats, which produce a curving structure with two NLS-binding sites, a major one close to the N terminus and a minor one close to the C terminus. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. The N-terminal importin-beta-binding (IBB) domain of importin-alpha contains an auto-regulatory region that mimics the NLS motif []. The release of importin-beta frees the auto-regulatory region on importin-alpha to loop back and bind to the major NLS-binding site, causing the cargo to be released []. This entry represents the N-terminal IBB domain of importin-alpha that contains the auto-regulatory region. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006606 protein import into nucleus, 0006886 intracellular protein transport, 0005634 nucleus, 0005737 cytoplasm; PDB: 1BK5_B 1UN0_A 1WA5_B 2C1T_A 1EE4_A 1BK6_A 1EE5_A 3TJ3_A 2JDQ_A 3FEY_C ....

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.47  E-value=8e-11  Score=109.66  Aligned_cols=327  Identities=15%  Similarity=0.163  Sum_probs=216.8

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCC-ChHHHHHHHHHHHHHhCCCchhhHHHH
Q 014945           76 MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSENTRVVI  154 (415)
Q Consensus        76 l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~~i~~~a~~~L~~l~~~~~~~~~~~~  154 (415)
                      ++..+...+|+....|..-..+.+.+. +++...+++.|.++.++.+++..+ .++.+.+.+-++...+.+.......+.
T Consensus        14 ~l~~L~~~dpe~lvrai~~~kN~vig~-~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL   92 (678)
T KOG1293|consen   14 LLYRLLHLDPEQLVRAIYMSKNLVIGF-TDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVL   92 (678)
T ss_pred             HHHhhhcCCHHHHHHHHHHhcchhhcC-CCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHH
Confidence            444555677888888999999988775 566667999999999999998755 256777778888888888888889999


Q ss_pred             hCCChHHHHHhhCCCC-HHHHHHHHHHHHHhcCCCchhHHHHH---hcCChHHHHHHhccchhHhHHHHHHHH-------
Q 014945          155 DHGAVPIFVRLLSSPT-DDVREQAVWALGNVAGDSPKCRDLVL---SNGALMPLLAQFNEHAKLSMLRNATWT-------  223 (415)
Q Consensus       155 ~~g~i~~L~~ll~~~~-~~v~~~a~~~L~nl~~~~~~~~~~~~---~~g~i~~L~~~l~~~~~~~~~~~a~~~-------  223 (415)
                      +.+.++.|.+++.+++ ..+.+..+.++.++...++.. +...   ...++..+..++ ..+.......-+..       
T Consensus        93 ~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q-~~~~s~~~~sIi~~~s~l~-s~~lk~~~~l~~~~~a~~s~~  170 (678)
T KOG1293|consen   93 RIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQ-DKKMSLHLKSIIVKFSLLY-SIELKYISRLDVSRAAHLSST  170 (678)
T ss_pred             HHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhccccc-ccchhhhHHHHHHHHHHHH-hhhhhhhhhhhhhhhcccccc
Confidence            9999999999999988 889999999999998766422 2111   111222222222 11111111111111       


Q ss_pred             -------------------------------HHHhhhCC---CCCch--hhh------hchHH--HHHHhhcCCChhHHH
Q 014945          224 -------------------------------LSNFCRGK---PQPLF--EQT------RPALP--ALERLIHSNDDEVLT  259 (415)
Q Consensus       224 -------------------------------l~~l~~~~---~~~~~--~~~------~~~l~--~l~~lL~~~d~~v~~  259 (415)
                                                     +..++++.   -..+.  ...      .++.+  .+..++++++..-+.
T Consensus       171 ~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l  250 (678)
T KOG1293|consen  171 KDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERL  250 (678)
T ss_pred             chhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHH
Confidence                                           22222111   00000  011      11222  122233333333333


Q ss_pred             HHHHHHHHhccCC-------------------------------------------------------------------
Q 014945          260 DACWALSYLSDGT-------------------------------------------------------------------  272 (415)
Q Consensus       260 ~a~~~l~~l~~~~-------------------------------------------------------------------  272 (415)
                      .++.++.++...+                                                                   
T Consensus       251 ~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~  330 (678)
T KOG1293|consen  251 RSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTT  330 (678)
T ss_pred             HHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhH
Confidence            3444443332210                                                                   


Q ss_pred             --------------h----------------------------------------------HHHH-------------HH
Q 014945          273 --------------N----------------------------------------------DKIQ-------------AV  279 (415)
Q Consensus       273 --------------~----------------------------------------------~~~~-------------~~  279 (415)
                                    +                                              ....             ..
T Consensus       331 ~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~a  410 (678)
T KOG1293|consen  331 TELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSA  410 (678)
T ss_pred             HHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHH
Confidence                          0                                              0000             00


Q ss_pred             H-----HcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHh
Q 014945          280 I-----EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT  354 (415)
Q Consensus       280 ~-----~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~  354 (415)
                      +     +..+++.+++++..++..+...++++|.|++.........++..|+++.+..++.+. ++.+|+.+.|+|.++.
T Consensus       411 L~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~-~~n~r~~~~~~Lr~l~  489 (678)
T KOG1293|consen  411 LRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDP-DFNSRANSLWVLRHLM  489 (678)
T ss_pred             HHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCC-CchHHHHHHHHHHHHH
Confidence            1     124567788888888888999999999999987777888899999999999999999 9999999999999999


Q ss_pred             cCCHHHHHHHHHcCC-HHHHHHHhccCCHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014945          355 AGNVNQIQAIIEAGI-IGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYK  407 (415)
Q Consensus       355 ~~~~~~~~~l~~~~~-i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l  407 (415)
                      -++.+..+......+ ...+..+..++++.|++.+...|.|++.+ ..+.+.++
T Consensus       490 f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~-~~~svdfl  542 (678)
T KOG1293|consen  490 FNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN-SRKSVDFL  542 (678)
T ss_pred             hcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC-cHHHHHHH
Confidence            876665555544444 45666677889999999999999999976 44556666

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.43  E-value=3.3e-11  Score=118.24  Aligned_cols=295  Identities=18%  Similarity=0.198  Sum_probs=213.8

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh
Q 014945           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  150 (415)
Q Consensus        71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  150 (415)
                      ...+.+++.+.++|...+..+--++..+....  +. ..+.   +++.+.+-+.+++ +.++..|++++++++.  ++..
T Consensus        42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~--~~-~~~l---~~n~l~kdl~~~n-~~~~~lAL~~l~~i~~--~~~~  112 (526)
T PF01602_consen   42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHED--PE-LLIL---IINSLQKDLNSPN-PYIRGLALRTLSNIRT--PEMA  112 (526)
T ss_dssp             STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTS--HH-HHHH---HHHHHHHHHCSSS-HHHHHHHHHHHHHH-S--HHHH
T ss_pred             hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcc--hh-HHHH---HHHHHHHhhcCCC-HHHHHHHHhhhhhhcc--cchh
Confidence            46788999999999999998888888876432  21 1111   4688888888888 9999999999999985  5554


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhC
Q 014945          151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  230 (415)
Q Consensus       151 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~  230 (415)
                      ..     +++.+.+++.++++.||..|+.++..+....|..   +... .++.+..++ .+.++.++..|+.++..+ ..
T Consensus       113 ~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL-~d~~~~V~~~a~~~l~~i-~~  181 (526)
T PF01602_consen  113 EP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLL-SDKDPSVVSAALSLLSEI-KC  181 (526)
T ss_dssp             HH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHT-THSSHHHHHHHHHHHHHH-HC
T ss_pred             hH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhc-cCCcchhHHHHHHHHHHH-cc
Confidence            43     4778888999999999999999999998766542   2222 577888888 778899999999999999 22


Q ss_pred             CCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHh
Q 014945          231 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI  310 (415)
Q Consensus       231 ~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl  310 (415)
                      .+..........++.+..++...++..+..++..+..++...+.....   ..+++.+..++.+.++.+...++.++..+
T Consensus       182 ~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l  258 (526)
T PF01602_consen  182 NDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKL  258 (526)
T ss_dssp             THHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence            211111444566677777778889999999999999988766654311   34677888888888888888888888877


Q ss_pred             hcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHH
Q 014945          311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAW  390 (415)
Q Consensus       311 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~  390 (415)
                      ....+      .-..+++.|..++.++ ++.++..++.++..++...+..+.     +....+..+..+++..++..++.
T Consensus       259 ~~~~~------~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~~~~~~v~-----~~~~~~~~l~~~~d~~Ir~~~l~  326 (526)
T PF01602_consen  259 SPSPE------LLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQSNPPAVF-----NQSLILFFLLYDDDPSIRKKALD  326 (526)
T ss_dssp             SSSHH------HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCCHCHHHHG-----THHHHHHHHHCSSSHHHHHHHHH
T ss_pred             hcchH------HHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhcccchhhh-----hhhhhhheecCCCChhHHHHHHH
Confidence            76433      1225677888888877 888888888888888875533222     12222333333778888888888


Q ss_pred             HHHHHhCCCC
Q 014945          391 AISNATSGGS  400 (415)
Q Consensus       391 aL~nl~~~~~  400 (415)
                      .|.+++...+
T Consensus       327 lL~~l~~~~n  336 (526)
T PF01602_consen  327 LLYKLANESN  336 (526)
T ss_dssp             HHHHH--HHH
T ss_pred             HHhhcccccc
Confidence            8888886543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.43  E-value=9.3e-11  Score=107.69  Aligned_cols=280  Identities=14%  Similarity=0.130  Sum_probs=204.5

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (415)
Q Consensus        72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  151 (415)
                      ....++..|+++|.-++..|+..+..+++.. ..........-+++.|...++++++...+..++.+|..+... +++|.
T Consensus       102 ~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~-~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~  179 (429)
T cd00256         102 TWEPFFNLLNRQDQFIVHMSFSILAKLACFG-LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRF  179 (429)
T ss_pred             chHHHHHHHcCCchhHHHHHHHHHHHHHhcC-ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHH
Confidence            4567788888899999999999999998754 222221111114556677777654468888899999999985 88999


Q ss_pred             HHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhh
Q 014945          152 VVIDHGAVPIFVRLLSSP--TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  229 (415)
Q Consensus       152 ~~~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~  229 (415)
                      .+.+.++++.|+.+|+..  +..++..++.|++-++.+.+ ........+.++.+++++..+..+.+.+-++.++.|+..
T Consensus       180 ~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~  258 (429)
T cd00256         180 AFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLIS  258 (429)
T ss_pred             HHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence            999999999999999762  56889999999999998776 445666788999999999888899999999999999998


Q ss_pred             CCC----CC--chhhhhchHHHHHHhhcC---CChhHHHHHHHHHH-------Hhcc---------------CCh-----
Q 014945          230 GKP----QP--LFEQTRPALPALERLIHS---NDDEVLTDACWALS-------YLSD---------------GTN-----  273 (415)
Q Consensus       230 ~~~----~~--~~~~~~~~l~~l~~lL~~---~d~~v~~~a~~~l~-------~l~~---------------~~~-----  273 (415)
                      ...    ..  ....+...++.++..|..   .|+++..+.-..-.       .++.               .+.     
T Consensus       259 ~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~  338 (429)
T cd00256         259 KRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEK  338 (429)
T ss_pred             cccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCch
Confidence            641    11  112223345555666643   46666544322211       1111               010     


Q ss_pred             ---HHHHHHHHc--CcHHHHHHhcC-CCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHH
Q 014945          274 ---DKIQAVIEA--GVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEAC  347 (415)
Q Consensus       274 ---~~~~~~~~~--~~i~~L~~lL~-~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~  347 (415)
                         ++...+-+.  .++..|+.+|. +.++.+..-||.=||.++...|..+..+-+.|+-..++.++.++ +++||.+|.
T Consensus       339 FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~-d~~Vr~eAL  417 (429)
T cd00256         339 FWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHE-DPNVRYEAL  417 (429)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCC-CHHHHHHHH
Confidence               112223333  35778899984 56788888999999999999888888777889999999999999 999999999


Q ss_pred             HHHHHHhc
Q 014945          348 WTISNITA  355 (415)
Q Consensus       348 ~~l~nl~~  355 (415)
                      .++..+..
T Consensus       418 ~avQklm~  425 (429)
T cd00256         418 LAVQKLMV  425 (429)
T ss_pred             HHHHHHHH
Confidence            99987764

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PTZ00429 beta-adaptin; Provisional

Probab=99.41  E-value=7.9e-10  Score=109.28  Aligned_cols=294  Identities=15%  Similarity=0.101  Sum_probs=202.4

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh
Q 014945           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  150 (415)
Q Consensus        71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  150 (415)
                      |.+..+.+.|++.+...+..+++.+....... .+..      .+++..++++.+++ .+++.-....+.+++...++..
T Consensus        32 ge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G-~DvS------~LF~dVvk~~~S~d-~elKKLvYLYL~~ya~~~pela  103 (746)
T PTZ00429         32 GEGAELQNDLNGTDSYRKKAAVKRIIANMTMG-RDVS------YLFVDVVKLAPSTD-LELKKLVYLYVLSTARLQPEKA  103 (746)
T ss_pred             chHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-CCch------HHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccChHHH
Confidence            45677888888888888888887555444332 2222      24677888888888 8999999999999988666543


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhC
Q 014945          151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  230 (415)
Q Consensus       151 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~  230 (415)
                      -.     +++.+.+=+.++++.+|..|++++++|-...  .-+.     .+.++.+.+ .+.++-+++.|+.++..+...
T Consensus       104 lL-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~~--i~e~-----l~~~lkk~L-~D~~pYVRKtAalai~Kly~~  170 (746)
T PTZ00429        104 LL-----AVNTFLQDTTNSSPVVRALAVRTMMCIRVSS--VLEY-----TLEPLRRAV-ADPDPYVRKTAAMGLGKLFHD  170 (746)
T ss_pred             HH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcHH--HHHH-----HHHHHHHHh-cCCCHHHHHHHHHHHHHHHhh
Confidence            22     3677888888999999999999999985321  1111     455667777 778999999999999999876


Q ss_pred             CCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHh
Q 014945          231 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI  310 (415)
Q Consensus       231 ~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl  310 (415)
                      .+.  .....+.++.|..+|.+.|+.|..+|+.++..+....+....  ...+.+..++..|...++..+...+.+|...
T Consensus       171 ~pe--lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y  246 (746)
T PTZ00429        171 DMQ--LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLPECNEWGQLYILELLAAQ  246 (746)
T ss_pred             Ccc--cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhhcCChHHHHHHHHHHHhc
Confidence            543  223356788899999999999999999999999866544332  2345577788888777777777888888664


Q ss_pred             hcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHH
Q 014945          311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAA  389 (415)
Q Consensus       311 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~  389 (415)
                      .-.++...     ..++..+...+++. ++.|.-+|+.++.++... +++.+..+... +-+.++.+ .+++++++-.++
T Consensus       247 ~P~~~~e~-----~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~~~~~~~~~~~~~~r-l~~pLv~L-~ss~~eiqyvaL  318 (746)
T PTZ00429        247 RPSDKESA-----ETLLTRVLPRMSHQ-NPAVVMGAIKVVANLASRCSQELIERCTVR-VNTALLTL-SRRDAETQYIVC  318 (746)
T ss_pred             CCCCcHHH-----HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCcCCHHHHHHHHHH-HHHHHHHh-hCCCccHHHHHH
Confidence            33222222     24677788888888 899999999998888753 23333332221 22344444 234555665555


Q ss_pred             HHHHHHhC
Q 014945          390 WAISNATS  397 (415)
Q Consensus       390 ~aL~nl~~  397 (415)
                      ..+.-++.
T Consensus       319 r~I~~i~~  326 (746)
T PTZ00429        319 KNIHALLV  326 (746)
T ss_pred             HHHHHHHH
Confidence            55544444

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.41  E-value=3e-10  Score=102.18  Aligned_cols=304  Identities=15%  Similarity=0.134  Sum_probs=215.6

Q ss_pred             CHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHH
Q 014945           84 DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFV  163 (415)
Q Consensus        84 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~  163 (415)
                      ...+..-|+..|.+++..  ...-..+...+++..|++.|+.++ .++...+...|..++-- .+++..+.+.|++..|+
T Consensus       276 QeqLLrva~ylLlNlAed--~~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~  351 (791)
T KOG1222|consen  276 QEQLLRVAVYLLLNLAED--ISVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLL  351 (791)
T ss_pred             HHHHHHHHHHHHHHHhhh--hhHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHH
Confidence            344555677788888642  233345788899999999999988 88888888999888875 67888899999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchH
Q 014945          164 RLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPAL  243 (415)
Q Consensus       164 ~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l  243 (415)
                      +++...+++++...+..+.|++.++. .|...+..|.+|.+..++.++...   ..|+..+..++..+..........++
T Consensus       352 klfp~~h~dL~~~tl~LlfNlSFD~g-lr~KMv~~GllP~l~~ll~~d~~~---~iA~~~lYh~S~dD~~K~MfayTdci  427 (791)
T KOG1222|consen  352 KLFPIQHPDLRKATLMLLFNLSFDSG-LRPKMVNGGLLPHLASLLDSDTKH---GIALNMLYHLSCDDDAKAMFAYTDCI  427 (791)
T ss_pred             HhcCCCCHHHHHHHHHHhhhcccccc-ccHHHhhccchHHHHHHhCCcccc---hhhhhhhhhhccCcHHHHHHHHHHHH
Confidence            99999999999999999999998887 678888999999999999544433   33555666676665555555556777


Q ss_pred             HHHHHhhc-CCChhHHHHHHH--------------------------------------HHHHhccCChHHHHHHHHcCc
Q 014945          244 PALERLIH-SNDDEVLTDACW--------------------------------------ALSYLSDGTNDKIQAVIEAGV  284 (415)
Q Consensus       244 ~~l~~lL~-~~d~~v~~~a~~--------------------------------------~l~~l~~~~~~~~~~~~~~~~  284 (415)
                      +.+.+.+- ..+.+|-.+.+.                                      .+.+++.+.......+++  .
T Consensus       428 ~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~Fid--y  505 (791)
T KOG1222|consen  428 KLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFID--Y  505 (791)
T ss_pred             HHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHH--H
Confidence            76665442 233333333222                                      223333332222222222  2


Q ss_pred             HHHHHHhcC-CCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCC-ccchHHHHHHHHHHHhcCCHHHHH
Q 014945          285 CPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY-KKSIKKEACWTISNITAGNVNQIQ  362 (415)
Q Consensus       285 i~~L~~lL~-~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~~v~~~a~~~l~nl~~~~~~~~~  362 (415)
                      +.-|...+. ++++.....++++++|+....-+..+.+.+.+++|.+-..|..+- .+++.-....+++.++.. ..+..
T Consensus       506 vgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-~~cA~  584 (791)
T KOG1222|consen  506 VGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-LDCAR  584 (791)
T ss_pred             HHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-hHHHH
Confidence            333444443 345667888999999999877677777778899999999997652 345666777777777763 44455


Q ss_pred             HHHHcCCHHHHHHHhcc--CCHHHHHHHHHHHHHHhCC
Q 014945          363 AIIEAGIIGPLVNLLLN--AEFEIKKEAAWAISNATSG  398 (415)
Q Consensus       363 ~l~~~~~i~~L~~~l~~--~~~~v~~~a~~aL~nl~~~  398 (415)
                      .+..+|+++.|+++|+.  .|.+.....+++...+..+
T Consensus       585 Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~H  622 (791)
T KOG1222|consen  585 LLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKH  622 (791)
T ss_pred             HhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Confidence            66689999999999986  5566777777777777655

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.40  E-value=8.8e-11  Score=120.85  Aligned_cols=230  Identities=18%  Similarity=0.211  Sum_probs=151.9

Q ss_pred             hcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchh
Q 014945          112 QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC  191 (415)
Q Consensus       112 ~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~  191 (415)
                      +...++.|+..|.+++ +.+|..|+..|+.+..           .+.++.|...|.++++.++..|+.+|+.+....+  
T Consensus       619 ~~~~~~~L~~~L~D~d-~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~--  684 (897)
T PRK13800        619 DAPSVAELAPYLADPD-PGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP--  684 (897)
T ss_pred             cchhHHHHHHHhcCCC-HHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC--
Confidence            4556789999999998 9999999999998753           2468899999999999999999999988853221  


Q ss_pred             HHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCC--------Cch----hhh-----hchHHHHHHhhcCCC
Q 014945          192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ--------PLF----EQT-----RPALPALERLIHSND  254 (415)
Q Consensus       192 ~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~--------~~~----~~~-----~~~l~~l~~lL~~~d  254 (415)
                              ..+.+...| .++++.++..++.+|..+....+.        .+.    ...     .+..+.|..++.+++
T Consensus       685 --------~~~~L~~~L-~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~  755 (897)
T PRK13800        685 --------PAPALRDHL-GSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDEN  755 (897)
T ss_pred             --------chHHHHHHh-cCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCC
Confidence                    112344445 445556666666555554311000        000    000     000122333444444


Q ss_pred             hhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHh
Q 014945          255 DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL  334 (415)
Q Consensus       255 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll  334 (415)
                      +.|+..++.+|+.+.....         ..++.|..++.++++.++..|+.+|+.+....          .+.+.+...+
T Consensus       756 ~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~----------~~~~~l~~aL  816 (897)
T PRK13800        756 REVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALAELGCPP----------DDVAAATAAL  816 (897)
T ss_pred             HHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc----------hhHHHHHHHh
Confidence            4444444444444432211         12567778888888888888888888875421          1234577888


Q ss_pred             cCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHH
Q 014945          335 TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA  395 (415)
Q Consensus       335 ~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl  395 (415)
                      .++ ++.||..|+++|+.+..  ++         .++.|+.+|.++++.||..|+++|+.+
T Consensus       817 ~d~-d~~VR~~Aa~aL~~l~~--~~---------a~~~L~~~L~D~~~~VR~~A~~aL~~~  865 (897)
T PRK13800        817 RAS-AWQVRQGAARALAGAAA--DV---------AVPALVEALTDPHLDVRKAAVLALTRW  865 (897)
T ss_pred             cCC-ChHHHHHHHHHHHhccc--cc---------hHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence            888 88899999999987643  22         468899999999999999999999997

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=2.7e-10  Score=108.72  Aligned_cols=332  Identities=14%  Similarity=0.165  Sum_probs=237.1

Q ss_pred             cHHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh
Q 014945           72 SLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  150 (415)
Q Consensus        72 ~i~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  150 (415)
                      -+|.|+.+|+. .+++++..|+++|.++...- ++....+++.+.||.|++-|..-.+.++-++++.+|-.|+..   +.
T Consensus       212 lvp~Lv~LL~~E~n~DIMl~AcRaltyl~evl-P~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~---H~  287 (1051)
T KOG0168|consen  212 LVPVLVALLSHEHNFDIMLLACRALTYLCEVL-PRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR---HP  287 (1051)
T ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHHhhc-cchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh---cc
Confidence            46889999985 57999999999999997654 566677889999999998777655689999999999999975   44


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCC--CchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhh
Q 014945          151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD--SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  228 (415)
Q Consensus       151 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~--~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~  228 (415)
                      ..+.++|++...+.+|+--...+++.|+.+..|+|..  ++++ +.+.+  .+|.|..+| +..+....++++-++..++
T Consensus       288 ~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f-~~v~e--alPlL~~lL-s~~D~k~ies~~ic~~ri~  363 (1051)
T KOG0168|consen  288 KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEF-HFVME--ALPLLTPLL-SYQDKKPIESVCICLTRIA  363 (1051)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc-hHHHH--HHHHHHHHH-hhccchhHHHHHHHHHHHH
Confidence            6788899999999999887888999999999999853  2222 44554  789999999 7778888899999999998


Q ss_pred             hCC-CCCc---hhhhhchHHHHHHhhcCCC----hhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCC----
Q 014945          229 RGK-PQPL---FEQTRPALPALERLIHSND----DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS----  296 (415)
Q Consensus       229 ~~~-~~~~---~~~~~~~l~~l~~lL~~~d----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~----  296 (415)
                      ... +.+.   .....+++..+.++|.-.+    ..+-...++.+.-++.+.+.....+.+.++...|..+|...+    
T Consensus       364 d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~n  443 (1051)
T KOG0168|consen  364 DGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSAN  443 (1051)
T ss_pred             HhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcc
Confidence            776 2222   2233677888888876543    345566677888888887766677777788777777774211    


Q ss_pred             ----------h-hhHHHHHHH-----------------------------------------------HHHhhc------
Q 014945          297 ----------P-SVLIPALRT-----------------------------------------------VGNIVT------  312 (415)
Q Consensus       297 ----------~-~v~~~a~~~-----------------------------------------------l~nl~~------  312 (415)
                                + ++.+....+                                               ...+..      
T Consensus       444 as~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~  523 (1051)
T KOG0168|consen  444 ASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDT  523 (1051)
T ss_pred             cccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCc
Confidence                      0 000000000                                               001111      


Q ss_pred             --------------------CChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc-CCHHHHHHHHH-cCCH
Q 014945          313 --------------------GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIE-AGII  370 (415)
Q Consensus       313 --------------------~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~-~~~i  370 (415)
                                          ..++..+.++. .++|.|+++..+.-++.||..+..+|..+.. .+++-+..++. .++-
T Consensus       524 ~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~-~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vS  602 (1051)
T KOG0168|consen  524 GTSRKQQDKLNGSAREGLLKNQPELLQSFGK-DLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVS  602 (1051)
T ss_pred             ccchhhhhhcCCchhhhhhhcCHHHHHHHHH-HHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHH
Confidence                                00111121111 4688999998887799999999999999987 57888888885 4555


Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhCCC
Q 014945          371 GPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYKFFYVSRTC  415 (415)
Q Consensus       371 ~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~~g~  415 (415)
                      ..+--+|.+.|..|.--|+....-+...-+.-+..+|   +..||
T Consensus       603 S~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F---~REGV  644 (1051)
T KOG0168|consen  603 SHLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSF---RREGV  644 (1051)
T ss_pred             HHHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhH---hhhhH
Confidence            6666778888888777777766666655555555666   55553

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.36  E-value=1e-10  Score=110.52  Aligned_cols=319  Identities=16%  Similarity=0.188  Sum_probs=210.0

Q ss_pred             ccHHHHHHhhc----CCCHH-HHHHHHHHHHHHhccCCCCchhHHH-hcCchHHHHHhhcC-CCChHHHHHHHHHHHHHh
Q 014945           71 ESLPAMVAGVW----SDDRN-IQLDATTQFRKLLSIERSPPINEVI-QSGVVPRFIEFLSR-DDFPQLQFEAAWALTNIA  143 (415)
Q Consensus        71 ~~i~~l~~~l~----~~~~~-~~~~a~~~l~~l~~~~~~~~~~~~~-~~g~i~~L~~ll~~-~~~~~i~~~a~~~L~~l~  143 (415)
                      +.+|.|+..|.    .+.+. ++..++.++..+...  -.+....- ...++..+++-... ..+..+|..|+.+|.|-.
T Consensus       125 n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~--i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsL  202 (859)
T KOG1241|consen  125 NQWPELIVTLVSNVGEEQASMVKESSLEALGYICED--IDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSL  202 (859)
T ss_pred             hhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHcc--CCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHH
Confidence            45666666554    33443 677788888887432  22221111 23455555655543 333789999999998855


Q ss_pred             CCCchhh-HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHH
Q 014945          144 SGTSENT-RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATW  222 (415)
Q Consensus       144 ~~~~~~~-~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~  222 (415)
                      .-...+. ...-.+=++...+..-++++.+++..|..||..|..-.-.+-........+..-+..+ ++++.++.-.+..
T Consensus       203 ef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~am-ks~~deValQaiE  281 (859)
T KOG1241|consen  203 EFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAM-KSDNDEVALQAIE  281 (859)
T ss_pred             HHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHH
Confidence            4222111 1111123456666677789999999999999998754333323333333344444555 5788899999999


Q ss_pred             HHHHhhhCCC-------------CCc--hh----hhhchHHHHHHhhcCC-------ChhHHHHHHHHHHHhccCChHHH
Q 014945          223 TLSNFCRGKP-------------QPL--FE----QTRPALPALERLIHSN-------DDEVLTDACWALSYLSDGTNDKI  276 (415)
Q Consensus       223 ~l~~l~~~~~-------------~~~--~~----~~~~~l~~l~~lL~~~-------d~~v~~~a~~~l~~l~~~~~~~~  276 (415)
                      .++++|....             .++  ..    ....++|.|+++|...       |......|-.+|.-++....+. 
T Consensus       282 FWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~-  360 (859)
T KOG1241|consen  282 FWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD-  360 (859)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc-
Confidence            9999986531             111  11    1246788888888441       2334455555565555332222 


Q ss_pred             HHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcC
Q 014945          277 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG  356 (415)
Q Consensus       277 ~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~  356 (415)
                        ++. -+++.+-+.+.++++.-+..|..++|.+..+.+.....-+..+++|.++.++.++ .-.++..++|+++.++.+
T Consensus       361 --Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~-sl~VkdTaAwtlgrI~d~  436 (859)
T KOG1241|consen  361 --IVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDP-SLWVKDTAAWTLGRIADF  436 (859)
T ss_pred             --chh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCc-hhhhcchHHHHHHHHHhh
Confidence              222 3566666778899999999999999999999887777777789999999999988 889999999999999987


Q ss_pred             CHHHHHH-HHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945          357 NVNQIQA-IIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG  398 (415)
Q Consensus       357 ~~~~~~~-l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~  398 (415)
                      .++.+.. ....+.++.++.-|. ++|++..++||++.+|+..
T Consensus       437 l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea  478 (859)
T KOG1241|consen  437 LPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEA  478 (859)
T ss_pred             chhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHH
Confidence            6654322 223445666666665 5789999999999999943

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=99.34  E-value=2.1e-10  Score=101.73  Aligned_cols=311  Identities=14%  Similarity=0.065  Sum_probs=215.2

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (415)
Q Consensus        72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  151 (415)
                      ..+..++.|..+|.-....+.+.+..+++.. +.........=....|-..+++..+++....|++||-.+... ++.+.
T Consensus       115 ~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g-~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~  192 (442)
T KOG2759|consen  115 EWLSFLNLLNRQDTFIVEMSFRILSKLACFG-NCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRY  192 (442)
T ss_pred             chHHHHHHHhcCChHHHHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchhh
Confidence            3678899999999888888889999887654 222211000012344555566644478888999999999986 88999


Q ss_pred             HHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhh
Q 014945          152 VVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  229 (415)
Q Consensus       152 ~~~~~g~i~~L~~ll~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~  229 (415)
                      .++...++..++..+.+  .+..++-+.+.|++-++.+++.. ..+...+.++.|..++..+..+.+.+-++.++.|++.
T Consensus       193 ~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~a-e~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~  271 (442)
T KOG2759|consen  193 AFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAA-EKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLD  271 (442)
T ss_pred             eeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHH-HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99988888889988833  57789999999999999887755 5567788999999999888899999999999999998


Q ss_pred             CCCCCc------hhhhhchHHHHHHhhcC---CChhHHHHHHHHHHHhccCChHHHHHHHHc-CcHHHHHHhcCCCChhh
Q 014945          230 GKPQPL------FEQTRPALPALERLIHS---NDDEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRHPSPSV  299 (415)
Q Consensus       230 ~~~~~~------~~~~~~~l~~l~~lL~~---~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~L~~lL~~~~~~v  299 (415)
                      ..+...      ...+..-++..++.|..   +|+++..+.-..-..|-..    .+.+-.- .....|-.-.-+-+|.-
T Consensus       272 k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~s----vq~LsSFDeY~sEl~sG~L~WSP~H  347 (442)
T KOG2759|consen  272 KGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNS----VQDLSSFDEYKSELRSGRLEWSPVH  347 (442)
T ss_pred             cCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH----HHhhccHHHHHHHHHhCCcCCCccc
Confidence            764222      12233445555555543   5777766644333333211    1111000 00111111111223322


Q ss_pred             HHHHHHHHHHhhcCChHHHHHHHHC--CChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHh
Q 014945          300 LIPALRTVGNIVTGDDMQTQCIINH--QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL  377 (415)
Q Consensus       300 ~~~a~~~l~nl~~~~~~~~~~~~~~--~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l  377 (415)
                      +..-.|-         ++...+-+.  .++..|+.+|+.+.+|.+-.-||.=++......|+....+.+-|+=..++++|
T Consensus       348 k~e~FW~---------eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Ll  418 (442)
T KOG2759|consen  348 KSEKFWR---------ENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLL  418 (442)
T ss_pred             cccchHH---------HhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHh
Confidence            3222221         122222222  46889999999886799999999999999999999888888999999999999


Q ss_pred             ccCCHHHHHHHHHHHHHHhCC
Q 014945          378 LNAEFEIKKEAAWAISNATSG  398 (415)
Q Consensus       378 ~~~~~~v~~~a~~aL~nl~~~  398 (415)
                      .++|++|+.+|+.|+..+..+
T Consensus       419 nh~d~~Vry~ALlavQ~lm~~  439 (442)
T KOG2759|consen  419 NHEDPEVRYHALLAVQKLMVH  439 (442)
T ss_pred             cCCCchHHHHHHHHHHHHHhh
Confidence            999999999999999887643

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.31  E-value=6.6e-10  Score=109.04  Aligned_cols=289  Identities=19%  Similarity=0.224  Sum_probs=215.1

Q ss_pred             HHHHhhcCC--CHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHH
Q 014945           75 AMVAGVWSD--DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV  152 (415)
Q Consensus        75 ~l~~~l~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~  152 (415)
                      ++.+.+.+.  +...+..++..+..+...+ .+..      .+.+..++++.+.+ ...+.-+--.+..+...+++....
T Consensus         8 el~~~~~~~~~~~~~~~~~l~kli~~~~~G-~~~~------~~~~~vi~l~~s~~-~~~Krl~yl~l~~~~~~~~~~~~l   79 (526)
T PF01602_consen    8 ELAKILNSFKIDISKKKEALKKLIYLMMLG-YDIS------FLFMEVIKLISSKD-LELKRLGYLYLSLYLHEDPELLIL   79 (526)
T ss_dssp             HHHHHHHCSSTHHHHHHHHHHHHHHHHHTT----G------STHHHHHCTCSSSS-HHHHHHHHHHHHHHTTTSHHHHHH
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHcC-CCCc------hHHHHHHHHhCCCC-HHHHHHHHHHHHHHhhcchhHHHH
Confidence            344444444  6666777776665554333 2211      36788999999877 899999988999998876663222


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCC
Q 014945          153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP  232 (415)
Q Consensus       153 ~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~  232 (415)
                           ++..+.+=+.++++.++..|+.++++++  .++....     .++.+..++ .++++.+++.|+.++..+....|
T Consensus        80 -----~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll-~~~~~~VRk~A~~~l~~i~~~~p  146 (526)
T PF01602_consen   80 -----IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLL-SDPSPYVRKKAALALLKIYRKDP  146 (526)
T ss_dssp             -----HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHH-HSSSHHHHHHHHHHHHHHHHHCH
T ss_pred             -----HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHh-cCCchHHHHHHHHHHHHHhccCH
Confidence                 4677888899999999999999999997  3322222     567778888 78888999999999999998754


Q ss_pred             CCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 014945          233 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT  312 (415)
Q Consensus       233 ~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~  312 (415)
                      .....  . .++.+..++.+.|+.++..|+.++..+ ..++.... -.-...++.|..++...++..+..+++++..++.
T Consensus       147 ~~~~~--~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~  221 (526)
T PF01602_consen  147 DLVED--E-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAP  221 (526)
T ss_dssp             CCHHG--G-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTS
T ss_pred             HHHHH--H-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-hhHHHHHHHhhhcccccchHHHHHHHHHHHhccc
Confidence            32211  1 689999999999999999999999999 33332211 1112356677777788999999999999999998


Q ss_pred             CChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHH
Q 014945          313 GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAI  392 (415)
Q Consensus       313 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL  392 (415)
                      ..+.....   ..+++.+..++++. ++.|.-+++.++..+....+      .-..+++.|..++.++++.++..++.+|
T Consensus       222 ~~~~~~~~---~~~i~~l~~~l~s~-~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~L  291 (526)
T PF01602_consen  222 MEPEDADK---NRIIEPLLNLLQSS-SPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDSL  291 (526)
T ss_dssp             SSHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred             CChhhhhH---HHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccchhehhHHHHH
Confidence            77655421   35678899999988 99999999999998876422      2223788999999999999999999999


Q ss_pred             HHHhCCC
Q 014945          393 SNATSGG  399 (415)
Q Consensus       393 ~nl~~~~  399 (415)
                      ..++...
T Consensus       292 ~~l~~~~  298 (526)
T PF01602_consen  292 SQLAQSN  298 (526)
T ss_dssp             HHHCCHC
T ss_pred             HHhhccc
Confidence            9998764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PTZ00429 beta-adaptin; Provisional

Probab=99.31  E-value=1.4e-08  Score=100.52  Aligned_cols=260  Identities=14%  Similarity=0.123  Sum_probs=185.5

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (415)
Q Consensus        72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  151 (415)
                      .++.+++.+.++|...+..+...+.+++...  + -..+.   +++.|.+-+.+++ +.+|-.|++.++++-.  ++..+
T Consensus        69 LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~--p-elalL---aINtl~KDl~d~N-p~IRaLALRtLs~Ir~--~~i~e  139 (746)
T PTZ00429         69 LFVDVVKLAPSTDLELKKLVYLYVLSTARLQ--P-EKALL---AVNTFLQDTTNSS-PVVRALAVRTMMCIRV--SSVLE  139 (746)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHcccC--h-HHHHH---HHHHHHHHcCCCC-HHHHHHHHHHHHcCCc--HHHHH
Confidence            5688889999999999999988888886432  2 11222   4788899999988 9999999999998776  44433


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC
Q 014945          152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK  231 (415)
Q Consensus       152 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~  231 (415)
                      .     +++.+.+.+.+.++.||..|+.++.++...+|.   .+...|.++.|..+| .+.++.++.+|+.+|..+....
T Consensus       140 ~-----l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~~  210 (746)
T PTZ00429        140 Y-----TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDYG  210 (746)
T ss_pred             H-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHhC
Confidence            3     356778888999999999999999999876663   455667888899988 7899999999999999998765


Q ss_pred             CCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhh
Q 014945          232 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV  311 (415)
Q Consensus       232 ~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~  311 (415)
                      +. ......+.+..+...|..-++..+...+.++......++...     ..++..+...|++.++.|...|++++-++.
T Consensus       211 ~~-~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~  284 (746)
T PTZ00429        211 SE-KIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANLA  284 (746)
T ss_pred             ch-hhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence            43 344446666777777777778888888888866543322221     246788889999999999999999999887


Q ss_pred             cCC-hHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCH
Q 014945          312 TGD-DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV  358 (415)
Q Consensus       312 ~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~  358 (415)
                      ... +........ .+-+.++.++ ++ ++.++-.+...+.-+....|
T Consensus       285 ~~~~~~~~~~~~~-rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~~~~P  329 (746)
T PTZ00429        285 SRCSQELIERCTV-RVNTALLTLS-RR-DAETQYIVCKNIHALLVIFP  329 (746)
T ss_pred             CcCCHHHHHHHHH-HHHHHHHHhh-CC-CccHHHHHHHHHHHHHHHCH
Confidence            642 222222111 1223444443 34 56666666655555544333

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.30  E-value=3.2e-10  Score=107.18  Aligned_cols=323  Identities=19%  Similarity=0.204  Sum_probs=222.9

Q ss_pred             HHHHHHhhcC--CCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh
Q 014945           73 LPAMVAGVWS--DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  150 (415)
Q Consensus        73 i~~l~~~l~~--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  150 (415)
                      +-.++.....  .+..++..|+.+|.+-+...+.-...+.-..=++...++..++++ .+++..|+.||..|..-..++.
T Consensus       174 LtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d-~~i~~aa~~ClvkIm~LyY~~m  252 (859)
T KOG1241|consen  174 LTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPD-EEIQVAAFQCLVKIMSLYYEFM  252 (859)
T ss_pred             HHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCc-HHHHHHHHHHHHHHHHHHHHHH
Confidence            4455666654  456788889999988764432111222223335666777778888 9999999999999998777777


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchh--------------HHHHH----hcCChHHHHHHhcc-c
Q 014945          151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC--------------RDLVL----SNGALMPLLAQFNE-H  211 (415)
Q Consensus       151 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~--------------~~~~~----~~g~i~~L~~~l~~-~  211 (415)
                      ...+....+..-+.-+.++++++.-+++...+++|.+.-+.              ....+    -.+.+|.|+.+|.+ +
T Consensus       253 ~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqd  332 (859)
T KOG1241|consen  253 EPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQD  332 (859)
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCC
Confidence            77777677787888888999999999999999987432110              00001    12456777787753 1


Q ss_pred             -----hhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHH
Q 014945          212 -----AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCP  286 (415)
Q Consensus       212 -----~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~  286 (415)
                           ++......|.-||.-+++...   ...+..++|.+-.-++++|..-+..+..+++.+..+.+.....-+-.++++
T Consensus       333 e~~d~DdWnp~kAAg~CL~l~A~~~~---D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp  409 (859)
T KOG1241|consen  333 EDDDDDDWNPAKAAGVCLMLFAQCVG---DDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALP  409 (859)
T ss_pred             CCcccccCcHHHHHHHHHHHHHHHhc---ccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhH
Confidence                 233455555555555554321   123357788888889999999999999999999988775544445567899


Q ss_pred             HHHHhcCCCChhhHHHHHHHHHHhhcCChHHHH-HHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHH----
Q 014945          287 RLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ-CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI----  361 (415)
Q Consensus       287 ~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~-~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~----  361 (415)
                      .++.++.++...++..+.|++|.++.+.++.+. .....+.++.++.-|.+  .|++...+||++.+++.+.++..    
T Consensus       410 ~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D--ePrva~N~CWAf~~Laea~~eA~~s~~  487 (859)
T KOG1241|consen  410 SIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND--EPRVASNVCWAFISLAEAAYEAAVSNG  487 (859)
T ss_pred             HHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh--CchHHHHHHHHHHHHHHHHHHhccCCC
Confidence            999999988888999999999999987764332 12223566777777765  58999999999999994322211    


Q ss_pred             -----HHHHHcCCHHHHHHHhcc---CCHHHHHHHHHHHHHHhCCCCHH
Q 014945          362 -----QAIIEAGIIGPLVNLLLN---AEFEIKKEAAWAISNATSGGSNE  402 (415)
Q Consensus       362 -----~~l~~~~~i~~L~~~l~~---~~~~v~~~a~~aL~nl~~~~~~~  402 (415)
                           ..+.+. ++..|+..-+.   .+...|..|-.||..+...++.+
T Consensus       488 qt~~~t~~y~~-ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~  535 (859)
T KOG1241|consen  488 QTDPATPFYEA-IIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDD  535 (859)
T ss_pred             CCCccchhHHH-HHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHH
Confidence                 112221 44455555443   45689999999999999887654

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=2.1e-09  Score=94.23  Aligned_cols=187  Identities=23%  Similarity=0.238  Sum_probs=155.3

Q ss_pred             cCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChH
Q 014945           81 WSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVP  160 (415)
Q Consensus        81 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~  160 (415)
                      .+.+++.+..|+.-|..++-  +-++...++..|++..++.++++++ ..+|..|+|+++.++..+|.....+++.|+++
T Consensus        93 ~s~~le~ke~ald~Le~lve--~iDnAndl~~~ggl~~ll~~l~~~~-~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~  169 (342)
T KOG2160|consen   93 SSVDLEDKEDALDNLEELVE--DIDNANDLISLGGLVPLLGYLENSD-AELRELAARVIGTAVQNNPKSQEQVIELGALS  169 (342)
T ss_pred             ccCCHHHHHHHHHHHHHHHH--hhhhHHhHhhccCHHHHHHHhcCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHcccHH
Confidence            35678888999999998864  3577788999999999999999998 99999999999999999999999999999999


Q ss_pred             HHHHhhCCC-CHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccc-hhHhHHHHHHHHHHHhhhCCCCCchhh
Q 014945          161 IFVRLLSSP-TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH-AKLSMLRNATWTLSNFCRGKPQPLFEQ  238 (415)
Q Consensus       161 ~L~~ll~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~  238 (415)
                      .|+..+.++ +..++..|+.+++.+....+...+.+...++...|...+... .+..+++.++..+..+...........
T Consensus       170 ~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~  249 (342)
T KOG2160|consen  170 KLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIA  249 (342)
T ss_pred             HHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHH
Confidence            999999874 456789999999999999988899999999999999999543 688899999999999998874433333


Q ss_pred             h-hchHHHHHHhhcCCChhHHHHHHHHHHHhcc
Q 014945          239 T-RPALPALERLIHSNDDEVLTDACWALSYLSD  270 (415)
Q Consensus       239 ~-~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~  270 (415)
                      . .++-..+..+..+.+.++.+.++.++..+..
T Consensus       250 ~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  250 SSLGFQRVLENLISSLDFEVNEAALTALLSLLS  282 (342)
T ss_pred             HHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence            3 3344445566666677888888777766553

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=5.2e-09  Score=91.79  Aligned_cols=183  Identities=19%  Similarity=0.221  Sum_probs=154.1

Q ss_pred             hHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHh
Q 014945          129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF  208 (415)
Q Consensus       129 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l  208 (415)
                      .+-+..|+.-|..++.. -++...+++.|++..++.++.+.+..+|+.|+|+|+..+.++|..+..+++.|++..|+..+
T Consensus        97 le~ke~ald~Le~lve~-iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~l  175 (342)
T KOG2160|consen   97 LEDKEDALDNLEELVED-IDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKIL  175 (342)
T ss_pred             HHHHHHHHHHHHHHHHh-hhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHH
Confidence            77888899999888885 77888899999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhHhHHHHHHHHHHHhhhCC-CCCchhhhhchHHHHHHhhcC--CChhHHHHHHHHHHHhccCChHHHHHHHHcCcH
Q 014945          209 NEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHS--NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVC  285 (415)
Q Consensus       209 ~~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~l~~lL~~--~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i  285 (415)
                      ..+.+..++..|+.+++.+.+.. +........++...|...+++  .+...+..++..+.++..........+...++.
T Consensus       176 s~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~  255 (342)
T KOG2160|consen  176 SSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQ  255 (342)
T ss_pred             ccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhh
Confidence            87778889999999999999998 444444445668899999988  567788999999999987766555555556777


Q ss_pred             HHHHHhcCCCChhhHHHHHHHHHHhhc
Q 014945          286 PRLVELLRHPSPSVLIPALRTVGNIVT  312 (415)
Q Consensus       286 ~~L~~lL~~~~~~v~~~a~~~l~nl~~  312 (415)
                      ..+..+....+..+...++.++-....
T Consensus       256 ~~~~~l~~~l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  256 RVLENLISSLDFEVNEAALTALLSLLS  282 (342)
T ss_pred             HHHHHHhhccchhhhHHHHHHHHHHHH
Confidence            777777777778888888777666554

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.16  E-value=2.7e-09  Score=99.64  Aligned_cols=282  Identities=13%  Similarity=0.126  Sum_probs=183.7

Q ss_pred             CCCHHHHHHHHHHHH---HHhccCCCCch----hHHHhcCchH--HHHHhhcCCCChHHHHHHHHHHHHHhCCCchh---
Q 014945           82 SDDRNIQLDATTQFR---KLLSIERSPPI----NEVIQSGVVP--RFIEFLSRDDFPQLQFEAAWALTNIASGTSEN---  149 (415)
Q Consensus        82 ~~~~~~~~~a~~~l~---~l~~~~~~~~~----~~~~~~g~i~--~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~---  149 (415)
                      ......+..|+..++   +++..+ +...    ....+.|+.+  ..-+++++++ ...+..++.++..+...+...   
T Consensus       192 ~~s~~~RlaaL~~~sr~~~iL~Nn-~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~-~s~~l~sl~cl~~~~~~s~~~d~l  269 (678)
T KOG1293|consen  192 YLSSKLRLAALLCLSRGDRILRNN-PLGSMFLLGLLKDKGVNIRCVVTRLLKDPD-FSERLRSLECLVPYLRKSFNYDPL  269 (678)
T ss_pred             hhhHHHHHHHHHHhhccceeeecC-chhHHHHHHHHhccccchhhhhhhhhhCCC-ccHHHHHHHHHHHHHhcccccccc
Confidence            345677888888888   666543 2221    2244667776  5667888887 788899999999888755111   


Q ss_pred             --hHHHHhCC----------------Ch-----HH-----HHHhhCC-CCH-------HHHHHHHHHHHHhcCCCchhHH
Q 014945          150 --TRVVIDHG----------------AV-----PI-----FVRLLSS-PTD-------DVREQAVWALGNVAGDSPKCRD  193 (415)
Q Consensus       150 --~~~~~~~g----------------~i-----~~-----L~~ll~~-~~~-------~v~~~a~~~L~nl~~~~~~~~~  193 (415)
                        ...+.+.|                ++     ..     +..+.+. ..+       +....-+.+-+.++...+.++.
T Consensus       270 ~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~  349 (678)
T KOG1293|consen  270 PWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRL  349 (678)
T ss_pred             ccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhH
Confidence              01111111                00     00     0001100 011       1112223333444444444444


Q ss_pred             HHHhcCChHHH---------------------HHHhccchhHhHHHHHHHHHHHhhhCCCCCc-hhhhhchHHHHHHhhc
Q 014945          194 LVLSNGALMPL---------------------LAQFNEHAKLSMLRNATWTLSNFCRGKPQPL-FEQTRPALPALERLIH  251 (415)
Q Consensus       194 ~~~~~g~i~~L---------------------~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~l~~l~~lL~  251 (415)
                      .++....++.-                     ...+....+.+....++.++.++++....-. ......+...+++++.
T Consensus       350 i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~  429 (678)
T KOG1293|consen  350 ILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLM  429 (678)
T ss_pred             HHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhh
Confidence            44332221110                     1111133466778888888888876541111 1222456778889999


Q ss_pred             CCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHH-H
Q 014945          252 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPC-L  330 (415)
Q Consensus       252 ~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~-L  330 (415)
                      .++..|...++.+|+|++-...+....++..|+++.+.+++.+.+..++..++|+|.++..+.++..+......+-.. +
T Consensus       430 dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i  509 (678)
T KOG1293|consen  430 DPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLI  509 (678)
T ss_pred             CcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHH
Confidence            899999999999999999776666788999999999999999999999999999999999999877776665555444 4


Q ss_pred             HHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHH
Q 014945          331 LDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE  366 (415)
Q Consensus       331 ~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~  366 (415)
                      ..+.+++ ++.|++.+...+.|+..++.+.++.+++
T Consensus       510 ~~l~nd~-d~~Vqeq~fqllRNl~c~~~~svdfll~  544 (678)
T KOG1293|consen  510 LDLINDP-DWAVQEQCFQLLRNLTCNSRKSVDFLLE  544 (678)
T ss_pred             HHHHhCC-CHHHHHHHHHHHHHhhcCcHHHHHHHHH
Confidence            5566666 9999999999999999998888877765

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.14  E-value=1.9e-07  Score=89.26  Aligned_cols=325  Identities=18%  Similarity=0.207  Sum_probs=238.7

Q ss_pred             ccHHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCC-CChHHHHHHHHHHHHHhCCCc-
Q 014945           71 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD-DFPQLQFEAAWALTNIASGTS-  147 (415)
Q Consensus        71 ~~i~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~i~~~a~~~L~~l~~~~~-  147 (415)
                      +.|+.|+....+ .=++.+..|+..|..+...     .+..+-.-+++.|++.|+.+ .++++...++..+.++..... 
T Consensus        22 ETI~kLcDRvessTL~eDRR~A~rgLKa~srk-----YR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~   96 (970)
T KOG0946|consen   22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSRK-----YREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS   96 (970)
T ss_pred             hHHHHHHHHHhhccchhhHHHHHHHHHHHHHH-----HHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence            578899988875 4478899999999888532     23333344589999988753 348999999999999887542 


Q ss_pred             -----hh----------hHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhcC-CCchhHHHHHhc-CChHHHHHHhc
Q 014945          148 -----EN----------TRVVID-HGAVPIFVRLLSSPTDDVREQAVWALGNVAG-DSPKCRDLVLSN-GALMPLLAQFN  209 (415)
Q Consensus       148 -----~~----------~~~~~~-~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~-~~~~~~~~~~~~-g~i~~L~~~l~  209 (415)
                           +.          .+.++. .+.|..++..+...|-.||..++..|.++.. .+++.++.++.. -++..|+.+| 
T Consensus        97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL-  175 (970)
T KOG0946|consen   97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL-  175 (970)
T ss_pred             hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH-
Confidence                 11          122333 5788899999999999999999999999875 455677776654 4799999999 


Q ss_pred             cchhHhHHHHHHHHHHHhhhCCCCCch-hhhhchHHHHHHhhcCC---C-hhHHHHHHHHHHHhccCChHHHHHHHHcCc
Q 014945          210 EHAKLSMLRNATWTLSNFCRGKPQPLF-EQTRPALPALERLIHSN---D-DEVLTDACWALSYLSDGTNDKIQAVIEAGV  284 (415)
Q Consensus       210 ~~~~~~~~~~a~~~l~~l~~~~~~~~~-~~~~~~l~~l~~lL~~~---d-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~  284 (415)
                      .+....++..++..|+.+..+.+..+. .....++..|..++...   | .-|..+++..+.||..++..+.+.+.+.+.
T Consensus       176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~  255 (970)
T KOG0946|consen  176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSY  255 (970)
T ss_pred             hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcccc
Confidence            777888999999999999998755544 44578899999999653   3 358889999999999888888788888899


Q ss_pred             HHHHHHhcCC---CC-----hh-----hHHHHHHHHHHhhcCC-h----HHH-HHHHHCCChHHHHHHhcCC-CccchHH
Q 014945          285 CPRLVELLRH---PS-----PS-----VLIPALRTVGNIVTGD-D----MQT-QCIINHQALPCLLDLLTQN-YKKSIKK  344 (415)
Q Consensus       285 i~~L~~lL~~---~~-----~~-----v~~~a~~~l~nl~~~~-~----~~~-~~~~~~~~l~~L~~ll~~~-~~~~v~~  344 (415)
                      +++|..+|..   .+     |.     -...++.++..++.-. .    .+. ..+...+++..|..++.++ -..+|+.
T Consensus       256 i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlt  335 (970)
T KOG0946|consen  256 IPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILT  335 (970)
T ss_pred             HHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHH
Confidence            9999988852   11     21     2234666666666421 1    222 4566779999999988776 3457999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHcCC----------HHHHHHHhcc-CCHHHHHHHHHHHHHHhCCCCH
Q 014945          345 EACWTISNITAGNVNQIQAIIEAGI----------IGPLVNLLLN-AEFEIKKEAAWAISNATSGGSN  401 (415)
Q Consensus       345 ~a~~~l~nl~~~~~~~~~~l~~~~~----------i~~L~~~l~~-~~~~v~~~a~~aL~nl~~~~~~  401 (415)
                      ++..+++++..|+..+...+.+..+          +-.++.+..+ ..+..|..+.+++..+......
T Consensus       336 esiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~  403 (970)
T KOG0946|consen  336 ESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDD  403 (970)
T ss_pred             HHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchh
Confidence            9999999999998888777765221          1122223222 5678999999999988876543

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.12  E-value=7.2e-08  Score=91.97  Aligned_cols=284  Identities=16%  Similarity=0.213  Sum_probs=215.1

Q ss_pred             chHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhcCCCc---
Q 014945          115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSP---  189 (415)
Q Consensus       115 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~~L~nl~~~~~---  189 (415)
                      .|+.|+.-+.+..-.+-|+.|+..|-.++.   +++..+...| +++|++.|..  .|+++...++.++.++.....   
T Consensus        23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~   98 (970)
T KOG0946|consen   23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE   98 (970)
T ss_pred             HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence            478888877765547789999999998885   5777777655 8889999876  588999999999999985442   


Q ss_pred             -----h--------hHHH-HHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhh---hhchHHHHHHhhcC
Q 014945          190 -----K--------CRDL-VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ---TRPALPALERLIHS  252 (415)
Q Consensus       190 -----~--------~~~~-~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~---~~~~l~~l~~lL~~  252 (415)
                           .        +.+. +...+.+..++..+ ...|-.++.+++..++++....|......   ...++..++.+|.+
T Consensus        99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~-e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D  177 (970)
T KOG0946|consen   99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSL-EEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD  177 (970)
T ss_pred             hcccchhhhHHHHHHHHHHHcCchhHHHHHHHH-HhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence                 1        1122 33456677788888 77788999999999999998875433322   25678899999999


Q ss_pred             CChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCC----ChhhHHHHHHHHHHhhcCChHHHHHHHHCCChH
Q 014945          253 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP----SPSVLIPALRTVGNIVTGDDMQTQCIINHQALP  328 (415)
Q Consensus       253 ~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~----~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~  328 (415)
                      .-+.||.+++..|..++.+++.....+.=.+++.+|.+++...    ..-|...|+..|.|+...+....+.+.+.+.+|
T Consensus       178 srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~  257 (970)
T KOG0946|consen  178 SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIP  257 (970)
T ss_pred             hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHH
Confidence            9999999999999999988876545455568999999999643    236788899999999999888888888889999


Q ss_pred             HHHHHhcCCC--c-----cch-----HHHHHHHHHHHhc-CCH----HHH-HHHHHcCCHHHHHHHhccC--CHHHHHHH
Q 014945          329 CLLDLLTQNY--K-----KSI-----KKEACWTISNITA-GNV----NQI-QAIIEAGIIGPLVNLLLNA--EFEIKKEA  388 (415)
Q Consensus       329 ~L~~ll~~~~--~-----~~v-----~~~a~~~l~nl~~-~~~----~~~-~~l~~~~~i~~L~~~l~~~--~~~v~~~a  388 (415)
                      .|.++|....  +     +.-     ...+..++..+.. +++    .+. +.+...+++..|+.++.++  ..+|+.++
T Consensus       258 rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltes  337 (970)
T KOG0946|consen  258 RLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTES  337 (970)
T ss_pred             HHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHH
Confidence            9998885431  1     111     1345555666665 332    222 3555788999999998876  46899999


Q ss_pred             HHHHHHHhCCCCHHH
Q 014945          389 AWAISNATSGGSNEQ  403 (415)
Q Consensus       389 ~~aL~nl~~~~~~~~  403 (415)
                      ..++.+...++...|
T Consensus       338 iitvAevVRgn~~nQ  352 (970)
T KOG0946|consen  338 IITVAEVVRGNARNQ  352 (970)
T ss_pred             HHHHHHHHHhchHHH
Confidence            999999998754433

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=99.10  E-value=9.8e-09  Score=94.41  Aligned_cols=318  Identities=14%  Similarity=0.083  Sum_probs=200.8

Q ss_pred             ccHHHHHHhhc----CCC-HHHHHHHHHHHHHHhccCCCCchhHHHhcC--chHHHHHhhcCCCChHHHHHHHHHHHH-H
Q 014945           71 ESLPAMVAGVW----SDD-RNIQLDATTQFRKLLSIERSPPINEVIQSG--VVPRFIEFLSRDDFPQLQFEAAWALTN-I  142 (415)
Q Consensus        71 ~~i~~l~~~l~----~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g--~i~~L~~ll~~~~~~~i~~~a~~~L~~-l  142 (415)
                      +.+|.++..+-    .+. ...+..++.++.+.....  .|...+..++  ++......++...+..+|..|+.+|.+ +
T Consensus       129 ~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~--~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl  206 (858)
T COG5215         129 SLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESE--APEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSL  206 (858)
T ss_pred             ccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhcc--CHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHH
Confidence            45666666554    333 456777888888876543  3322222232  222333445554447899999999977 2


Q ss_pred             hCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHH
Q 014945          143 ASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATW  222 (415)
Q Consensus       143 ~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~  222 (415)
                      ......+...--.+=++...+..-+.++.+++..|..||..|..-.-.+-....+........+.+ ++++.++...+..
T Consensus       207 ~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~m-ks~nd~va~qavE  285 (858)
T COG5215         207 MFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFM-KSQNDEVAIQAVE  285 (858)
T ss_pred             HHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchHHHHHHHH
Confidence            221000000000111344555566678999999999999998754333333333432223333444 7888899999999


Q ss_pred             HHHHhhhCCCCCch-----------------hhhhchHHHHHHhhcCC-------ChhHHHHHHHHHHHhccCChHHHHH
Q 014945          223 TLSNFCRGKPQPLF-----------------EQTRPALPALERLIHSN-------DDEVLTDACWALSYLSDGTNDKIQA  278 (415)
Q Consensus       223 ~l~~l~~~~~~~~~-----------------~~~~~~l~~l~~lL~~~-------d~~v~~~a~~~l~~l~~~~~~~~~~  278 (415)
                      .++.+|........                 ..+..++|.|+.+|...       |..+-..|..+|.-.+....+.   
T Consensus       286 fWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~---  362 (858)
T COG5215         286 FWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDK---  362 (858)
T ss_pred             HHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhH---
Confidence            99999876411110                 11356889999999542       3345566666666665443322   


Q ss_pred             HHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCH
Q 014945          279 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV  358 (415)
Q Consensus       279 ~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~  358 (415)
                      +++. ++..+-+-+.++++.-++.+.-++|.+..++......-+-+.++|.+...+.++ .-.++..++|+++.|+.+-+
T Consensus       363 i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~-~l~vk~ttAwc~g~iad~va  440 (858)
T COG5215         363 IMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDS-CLWVKSTTAWCFGAIADHVA  440 (858)
T ss_pred             hHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccc-eeehhhHHHHHHHHHHHHHH
Confidence            2222 455556667889999999999999999999887666666678899999999888 88999999999999986533


Q ss_pred             HHHHHHHHcCCHHHHHHHhc---cCCHHHHHHHHHHHHHHhCCC
Q 014945          359 NQIQAIIEAGIIGPLVNLLL---NAEFEIKKEAAWAISNATSGG  399 (415)
Q Consensus       359 ~~~~~l~~~~~i~~L~~~l~---~~~~~v~~~a~~aL~nl~~~~  399 (415)
                      +.+.   ..|-++..+....   .+.|.+..+++|+..|++.+-
T Consensus       441 ~~i~---p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~  481 (858)
T COG5215         441 MIIS---PCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHI  481 (858)
T ss_pred             HhcC---ccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhh
Confidence            3222   2233333333221   256889999999999998654

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=99.09  E-value=3e-08  Score=91.34  Aligned_cols=322  Identities=13%  Similarity=0.124  Sum_probs=208.3

Q ss_pred             ccHHHHHHhhcCC-------CHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHh
Q 014945           71 ESLPAMVAGVWSD-------DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIA  143 (415)
Q Consensus        71 ~~i~~l~~~l~~~-------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~  143 (415)
                      +.+|.++++|..+       |...-..|..+|.-+....    .+.+.+. ++...-+-+++++ ..-+..|+.+++.+.
T Consensus       321 dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~----gd~i~~p-Vl~FvEqni~~~~-w~nreaavmAfGSvm  394 (858)
T COG5215         321 DVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLK----GDKIMRP-VLGFVEQNIRSES-WANREAAVMAFGSVM  394 (858)
T ss_pred             HHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHh----hhHhHHH-HHHHHHHhccCch-hhhHHHHHHHhhhhh
Confidence            3579999999752       2344455555554443211    1222221 3444445566777 788999999999999


Q ss_pred             CCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhcc--chhHhHHHHHH
Q 014945          144 SGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE--HAKLSMLRNAT  221 (415)
Q Consensus       144 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~--~~~~~~~~~a~  221 (415)
                      .+..+....-+-..++|.+...+.++..-+.+.+.||++.|+..-+   ..+-..|.++..+.....  .+.+....+++
T Consensus       395 ~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va---~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncs  471 (858)
T COG5215         395 HGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVA---MIISPCGHLVLEVSASLIGLMDCPFRSINCS  471 (858)
T ss_pred             cCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHH---HhcCccccccHHHHHHHhhhhccchHHhhhH
Confidence            9866555444445789999999988888899999999999986543   445556666666655422  34677888999


Q ss_pred             HHHHHhhhCCCCCc---hhhhhchHHHHHHhh------cCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHH-----
Q 014945          222 WTLSNFCRGKPQPL---FEQTRPALPALERLI------HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR-----  287 (415)
Q Consensus       222 ~~l~~l~~~~~~~~---~~~~~~~l~~l~~lL------~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~-----  287 (415)
                      |...|+..+-+...   ...+..+.+.++.-|      ..++...+..+..+|+.+....++....+. .|+...     
T Consensus       472 w~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~-a~~~~~~~~kl  550 (858)
T COG5215         472 WRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDIL-AGFYDYTSKKL  550 (858)
T ss_pred             HHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHH-HHHHHHHHHHH
Confidence            99999998763322   223334444444322      234567888888888887755543322221 122222     


Q ss_pred             ------HHHhcCCCC----hhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCC
Q 014945          288 ------LVELLRHPS----PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN  357 (415)
Q Consensus       288 ------L~~lL~~~~----~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~  357 (415)
                            +-+.|..++    .+++..-+..|..+....+..++.+-+ .++..++++|++.....+......++++++..-
T Consensus       551 ~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D-~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl  629 (858)
T COG5215         551 DECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVED-QLMELFIRILESTKPTTAFGDVYTAISALSTSL  629 (858)
T ss_pred             HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHH-HHHHHHHHHHhccCCchhhhHHHHHHHHHHHHH
Confidence                  222222222    357777888888887655433332222 466778888988834456778889999999865


Q ss_pred             HHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCHHHH
Q 014945          358 VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI  404 (415)
Q Consensus       358 ~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~  404 (415)
                      .+........ ++|.|.+-|...|..+...|...++.++..-..++.
T Consensus       630 ~e~Fe~y~~~-fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~  675 (858)
T COG5215         630 EERFEQYASK-FIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFN  675 (858)
T ss_pred             HHHHHHHHhh-hhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHH
Confidence            5655555544 999999999888999999999999999876554443

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.08  E-value=1.4e-08  Score=99.42  Aligned_cols=276  Identities=17%  Similarity=0.222  Sum_probs=210.6

Q ss_pred             HHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHH
Q 014945           85 RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR  164 (415)
Q Consensus        85 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~  164 (415)
                      ...|..|.+.+....+..+.||-+       +|..++.|-+   .--|..|+..|+....-.+-....-..-|++|.+++
T Consensus       450 FteQLTAFevWLd~gse~r~PPeQ-------LPiVLQVLLS---QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLK  519 (1387)
T KOG1517|consen  450 FTEQLTAFEVWLDYGSESRTPPEQ-------LPIVLQVLLS---QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLK  519 (1387)
T ss_pred             HHHHHHHHHHHHHhccccCCChHh-------cchHHHHHHH---HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHH
Confidence            355777777777776666666654       4666666654   345788999999988877877788888899999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccch--hHhHHHHHHHHHHHhhhCCCCCchhh-hhc
Q 014945          165 LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA--KLSMLRNATWTLSNFCRGKPQPLFEQ-TRP  241 (415)
Q Consensus       165 ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~-~~~  241 (415)
                      +|+++-.+++...+.+.+.|..-++.|+..+++.++...+++.|..++  +++-+..++++|+.++.+.+..+... ..+
T Consensus       520 LLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~  599 (1387)
T KOG1517|consen  520 LLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGN  599 (1387)
T ss_pred             HhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhcccc
Confidence            999999999999999999988777889999999999999999885423  45678889999999998875444433 356


Q ss_pred             hHHHHHHhhcCC-ChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcC----ChH
Q 014945          242 ALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG----DDM  316 (415)
Q Consensus       242 ~l~~l~~lL~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~----~~~  316 (415)
                      ++......|.++ .+-++.-+|-+|+.|=.+.++..=.-.+.++.+.|..+|+++-++||..|+.+||.+..+    .++
T Consensus       600 li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde  679 (1387)
T KOG1517|consen  600 LIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDE  679 (1387)
T ss_pred             HHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccch
Confidence            777888888875 577889999999999766655433345568899999999999999999999999999985    333


Q ss_pred             HHHHH------------HHCCCh---HHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHH
Q 014945          317 QTQCI------------INHQAL---PCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIG  371 (415)
Q Consensus       317 ~~~~~------------~~~~~l---~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~  371 (415)
                      +...+            ++..+.   -.++.+++++ .+-++.+.+-+|+.+..+...+...+.-+...+
T Consensus       680 ~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~g~~~~~~~va~n~~~~  748 (1387)
T KOG1517|consen  680 QTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVVVALSHFVVGYVSHLKVVAGNYLLP  748 (1387)
T ss_pred             hhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHHhhHHHhHHHhhhhccc
Confidence            33322            222222   2667778888 999999999999999988777665554433333

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.06  E-value=5.2e-09  Score=94.82  Aligned_cols=228  Identities=18%  Similarity=0.259  Sum_probs=159.5

Q ss_pred             hHHHHHhhC--CCCHHHHHHHHHHHHHhcCCCchhHHHHHh------cCChHHHHHHhccchhHhHHHHHHHHHHHhhhC
Q 014945          159 VPIFVRLLS--SPTDDVREQAVWALGNVAGDSPKCRDLVLS------NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  230 (415)
Q Consensus       159 i~~L~~ll~--~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~------~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~  230 (415)
                      ...++.+|+  ++++++...++..+..+..+.+...+.+..      .....++++++ ..+|..+...++..++.+...
T Consensus        57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll-~~~D~~i~~~a~~iLt~Ll~~  135 (312)
T PF03224_consen   57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLL-DRNDSFIQLKAAFILTSLLSQ  135 (312)
T ss_dssp             -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH--S-SSHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHc
Confidence            334444443  467889999999999999888876666655      22578888877 667999999999999999988


Q ss_pred             CCCCchhhhhchHHHHHHhhcC----CChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhc-----CC--CChhh
Q 014945          231 KPQPLFEQTRPALPALERLIHS----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-----RH--PSPSV  299 (415)
Q Consensus       231 ~~~~~~~~~~~~l~~l~~lL~~----~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL-----~~--~~~~v  299 (415)
                      .+........+.++.++..+.+    ++.+++..++.++.++..... ....+.+.|+++.+.++|     .+  .+..+
T Consensus       136 ~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~-~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql  214 (312)
T PF03224_consen  136 GPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKE-YRQVFWKSNGVSPLFDILRKQATNSNSSGIQL  214 (312)
T ss_dssp             TTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHH-HHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred             CCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcch-hHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence            7555554335566666666543    566778899999999986555 446688899999999999     22  23567


Q ss_pred             HHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCH-HHHHHHHHcCCHHHHHHHhc
Q 014945          300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV-NQIQAIIEAGIIGPLVNLLL  378 (415)
Q Consensus       300 ~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~l~~~~~i~~L~~~l~  378 (415)
                      +-.++.++.-++.. ++....+.+.++++.+..+++.....+|-+-+..++.|++...+ .....++..|+++.+-.+..
T Consensus       215 ~Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~  293 (312)
T PF03224_consen  215 QYQALLCLWLLSFE-PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE  293 (312)
T ss_dssp             HHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred             HHHHHHHHHHHhcC-HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence            78899999888875 55777788889999999999887688999999999999998544 37778888877777766665


Q ss_pred             c--CCHHHHHHHH
Q 014945          379 N--AEFEIKKEAA  389 (415)
Q Consensus       379 ~--~~~~v~~~a~  389 (415)
                      .  +|+++....-
T Consensus       294 rk~~Dedl~edl~  306 (312)
T PF03224_consen  294 RKWSDEDLTEDLE  306 (312)
T ss_dssp             S--SSHHHHHHHH
T ss_pred             CCCCCHHHHHHHH
Confidence            4  7788766443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.99  E-value=1.2e-08  Score=92.56  Aligned_cols=214  Identities=18%  Similarity=0.265  Sum_probs=150.3

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHh------cCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCch
Q 014945           75 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQ------SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE  148 (415)
Q Consensus        75 ~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~------~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~  148 (415)
                      .+++.+ +.+++.....+..+..+++.. ....+.+..      ......|++++.++| ..++..|+.+|+.++...+.
T Consensus        62 ~lL~~~-~~~~d~v~yvL~li~dll~~~-~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D-~~i~~~a~~iLt~Ll~~~~~  138 (312)
T PF03224_consen   62 NLLNKL-SSNDDTVQYVLTLIDDLLSDD-PSRVELFLELAKQDDSDPYSPFLKLLDRND-SFIQLKAAFILTSLLSQGPK  138 (312)
T ss_dssp             HHHHHH----HHHHHHHHHHHHHHHH-S-SSSHHHHHHHHH-TTH--HHHHHHH-S-SS-HHHHHHHHHHHHHHHTSTTT
T ss_pred             HHHHHc-cCcHHHHHHHHHHHHHHHhcC-HHHHHHHHHhcccccchhHHHHHHHhcCCC-HHHHHHHHHHHHHHHHcCCc
Confidence            444444 568888999999999998765 344444432      236788889888887 99999999999999886555


Q ss_pred             hhHHHHhCCChHHHHHhhCC----CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHh------ccchhHhHHH
Q 014945          149 NTRVVIDHGAVPIFVRLLSS----PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF------NEHAKLSMLR  218 (415)
Q Consensus       149 ~~~~~~~~g~i~~L~~ll~~----~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l------~~~~~~~~~~  218 (415)
                      ...... .+.++.+++++.+    ++.+++..|+.+|.++....+ +|..+.+.|+++.+..++      ....+.+++.
T Consensus       139 ~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~-~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y  216 (312)
T PF03224_consen  139 RSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKE-YRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQY  216 (312)
T ss_dssp             --HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHH-HHHHHHTHHHHHHHHHHHH---------HHHHHH
T ss_pred             cccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcch-hHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHH
Confidence            444322 3556777777654    456678999999999985554 899999999999999999      4566889999


Q ss_pred             HHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccCChH-HHHHHHHcCcHHHHHHhcC
Q 014945          219 NATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN-DDEVLTDACWALSYLSDGTND-KIQAVIEAGVCPRLVELLR  293 (415)
Q Consensus       219 ~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~-d~~v~~~a~~~l~~l~~~~~~-~~~~~~~~~~i~~L~~lL~  293 (415)
                      +++.+++.|+..+.........+++|.++.+++.. .++|..-++.++.|+...... ....++..|+++.+-.+..
T Consensus       217 ~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~  293 (312)
T PF03224_consen  217 QALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE  293 (312)
T ss_dssp             HHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred             HHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence            99999999998754444444466899999999764 688999999999999977653 5677888887666655553

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.92  E-value=1.3e-06  Score=82.97  Aligned_cols=218  Identities=16%  Similarity=0.171  Sum_probs=162.6

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHH
Q 014945           74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV  153 (415)
Q Consensus        74 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~  153 (415)
                      +.++.+|++.-|-++..|+..+.++.-.. ++..+     ..+|.|.+-|.++| +.++..|+.++|.+|..+|.+.-  
T Consensus       147 ~Dv~tLL~sskpYvRKkAIl~lykvFLkY-PeAlr-----~~FprL~EkLeDpD-p~V~SAAV~VICELArKnPknyL--  217 (877)
T KOG1059|consen  147 DDVFTLLNSSKPYVRKKAILLLYKVFLKY-PEALR-----PCFPRLVEKLEDPD-PSVVSAAVSVICELARKNPQNYL--  217 (877)
T ss_pred             HHHHHHHhcCchHHHHHHHHHHHHHHHhh-hHhHh-----hhHHHHHHhccCCC-chHHHHHHHHHHHHHhhCCcccc--
Confidence            67788889888989999998888876443 22222     25899999999999 99999999999999998776543  


Q ss_pred             HhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC-
Q 014945          154 IDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-  231 (415)
Q Consensus       154 ~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~-  231 (415)
                         ..-|.+..+|.. .|.=+....+..+++|+--.|.....     .+++|..++.+..-..+...+..++..-+... 
T Consensus       218 ---~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~s~s~g  289 (877)
T KOG1059|consen  218 ---QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAVSMSSG  289 (877)
T ss_pred             ---cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence               245778887765 34445667888999998777755444     67899999955445556666665554332221 


Q ss_pred             CCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhh
Q 014945          232 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV  311 (415)
Q Consensus       232 ~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~  311 (415)
                      .......+.-++..|-.++.++|+.+..-++-+++.+....+..++..     -+.++.+|.+.++.++..|+..+--++
T Consensus       290 ~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl~gmV  364 (877)
T KOG1059|consen  290 MSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDKDESIRLRALDLLYGMV  364 (877)
T ss_pred             CCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccCCchhHHHHHHHHHHHh
Confidence            123344556778888889999999999999999999997776554432     377899999999999999999888777


Q ss_pred             cC
Q 014945          312 TG  313 (415)
Q Consensus       312 ~~  313 (415)
                      ..
T Consensus       365 sk  366 (877)
T KOG1059|consen  365 SK  366 (877)
T ss_pred             hh
Confidence            53

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.91  E-value=3.6e-07  Score=88.98  Aligned_cols=310  Identities=15%  Similarity=0.144  Sum_probs=194.3

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHH
Q 014945           75 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI  154 (415)
Q Consensus        75 ~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~  154 (415)
                      .|++.+.+.|.+.++.|+.-|.+=+... .-..+.--+..++..++++|++.+ .++|..|+.|++-+++.-++.+-.  
T Consensus         9 ~LlekmtssDKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~D~n-gEVQnlAVKClg~lvsKvke~~le--   84 (1233)
T KOG1824|consen    9 NLLEKMTSSDKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLEDKN-GEVQNLAVKCLGPLVSKVKEDQLE--   84 (1233)
T ss_pred             HHHHHccCCCcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHhccC-cHHHHHHHHHHHHHHhhchHHHHH--
Confidence            7888999999999999999888766543 222333334567899999999998 999999999999999754444322  


Q ss_pred             hCCChHHHHHhhCCCCHHHHHHHHHHHHHh-cCCCchhHHHHHhcCChHHHHHHh----ccch-hHhHHHHHHHHHHHhh
Q 014945          155 DHGAVPIFVRLLSSPTDDVREQAVWALGNV-AGDSPKCRDLVLSNGALMPLLAQF----NEHA-KLSMLRNATWTLSNFC  228 (415)
Q Consensus       155 ~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl-~~~~~~~~~~~~~~g~i~~L~~~l----~~~~-~~~~~~~a~~~l~~l~  228 (415)
                        ..++.|+.-+-++.+..+..+.-.|... +.-.| .....+...+.+.++..+    .... ...++..++..+..+.
T Consensus        85 --~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P-~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~l  161 (1233)
T KOG1824|consen   85 --TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPP-SSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVL  161 (1233)
T ss_pred             --HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCC-ccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHH
Confidence              1344555544444444444443333322 22222 222223333444444444    2222 2335666666665554


Q ss_pred             hCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCC-ChhhHHHHHHHH
Q 014945          229 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP-SPSVLIPALRTV  307 (415)
Q Consensus       229 ~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~l  307 (415)
                      ......-..+-.+.+..++.-+.++...|+..++.+|+.++...+..   +. .++++.|+.-|..+ .......-+.+|
T Consensus       162 sr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~---ly-~~li~~Ll~~L~~~~q~~~~rt~Iq~l  237 (1233)
T KOG1824|consen  162 SRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD---LY-VELIEHLLKGLSNRTQMSATRTYIQCL  237 (1233)
T ss_pred             HhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH---HH-HHHHHHHHhccCCCCchHHHHHHHHHH
Confidence            44322222244566677777788888999999999999998654432   11 24567777777544 444555566788


Q ss_pred             HHhhcCChHHHHHHHHCCChHHHHHHh---cCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccC----
Q 014945          308 GNIVTGDDMQTQCIINHQALPCLLDLL---TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA----  380 (415)
Q Consensus       308 ~nl~~~~~~~~~~~~~~~~l~~L~~ll---~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~----  380 (415)
                      +.++.........- -...+|.+.++.   +.. ++++|+.+..++..+...+|..+-..+.. ++..+++.+.++    
T Consensus       238 ~~i~r~ag~r~~~h-~~~ivp~v~~y~~~~e~~-dDELrE~~lQale~fl~rcp~ei~p~~pe-i~~l~l~yisYDPNy~  314 (1233)
T KOG1824|consen  238 AAICRQAGHRFGSH-LDKIVPLVADYCNKIEED-DDELREYCLQALESFLRRCPKEILPHVPE-IINLCLSYISYDPNYN  314 (1233)
T ss_pred             HHHHHHhcchhhcc-cchhhHHHHHHhcccccC-cHHHHHHHHHHHHHHHHhChhhhcccchH-HHHHHHHHhccCCCCC
Confidence            88876443222211 115678888888   556 88999999999999988777766554443 455555544321    


Q ss_pred             ------------------------------CHHHHHHHHHHHHHHhCC
Q 014945          381 ------------------------------EFEIKKEAAWAISNATSG  398 (415)
Q Consensus       381 ------------------------------~~~v~~~a~~aL~nl~~~  398 (415)
                                                    .++||.+|+.++.-+...
T Consensus       315 yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsS  362 (1233)
T KOG1824|consen  315 YDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISS  362 (1233)
T ss_pred             CCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhc
Confidence                                          246999999999888754

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.88  E-value=1.5e-07  Score=84.80  Aligned_cols=266  Identities=14%  Similarity=0.102  Sum_probs=180.7

Q ss_pred             ccHHHHHHhhcCCCHH--HHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCch
Q 014945           71 ESLPAMVAGVWSDDRN--IQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE  148 (415)
Q Consensus        71 ~~i~~l~~~l~~~~~~--~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~  148 (415)
                      +++..|++++.+.+.+  ++.+|...|..++..   ++.+.+...| +..++.+-+....++.+...+.+|.++..++.+
T Consensus       180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a---eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee  255 (832)
T KOG3678|consen  180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILVA---ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE  255 (832)
T ss_pred             chHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh---hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence            6789999999987754  588999999999864   5566676665 555555555544478999999999999999999


Q ss_pred             hhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCC-CchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHh
Q 014945          149 NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD-SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF  227 (415)
Q Consensus       149 ~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l  227 (415)
                      ....++..|+++.++-.....++.+..+|..+|+|++-. ....+..+++..+-+-|..+. .+.+.-++.+||.+++.+
T Consensus       256 t~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA-~skDel~R~~AClAV~vl  334 (832)
T KOG3678|consen  256 TCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA-FSKDELLRLHACLAVAVL  334 (832)
T ss_pred             HHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh-cchHHHHHHHHHHHHhhh
Confidence            999999999999999999999999999999999999843 445566777776777777666 666888899999999999


Q ss_pred             hhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHH
Q 014945          228 CRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV  307 (415)
Q Consensus       228 ~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l  307 (415)
                      +..+.........+.+..+-.++.+-|+.--..   --...+.+..        ..-+++|+.+|.+..-+.+..+..-+
T Consensus       335 at~KE~E~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG~~--------~d~LqRLvPlLdS~R~EAq~i~AF~l  403 (832)
T KOG3678|consen  335 ATNKEVEREVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQGRG--------PDDLQRLVPLLDSNRLEAQCIGAFYL  403 (832)
T ss_pred             hhhhhhhHHHhhccchhhhhhhhhccCcchhhh---hhhhhhccCC--------hHHHHHhhhhhhcchhhhhhhHHHHH
Confidence            987644444444555555555555555442111   1111111111        13468899999865444433333222


Q ss_pred             HHhh--cCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHH
Q 014945          308 GNIV--TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI  353 (415)
Q Consensus       308 ~nl~--~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl  353 (415)
                      ..=+  .......+.+-+-|.+..|..+.+++ +..-.+.|-.+|.-|
T Consensus       404 ~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtvi  450 (832)
T KOG3678|consen  404 CAEAAIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTVI  450 (832)
T ss_pred             HHHHHHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHh
Confidence            2111  11122344455669999999999877 655444454555443

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=98.87  E-value=2.1e-07  Score=88.36  Aligned_cols=317  Identities=14%  Similarity=0.158  Sum_probs=201.1

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCC-hHHHHHHHHHHHHHhCCC-chh
Q 014945           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDF-PQLQFEAAWALTNIASGT-SEN  149 (415)
Q Consensus        72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~-~~i~~~a~~~L~~l~~~~-~~~  149 (415)
                      .+..++.-++++.+..+..++....++.+.-....+++-.+.-.+..++-.++.++. ..+-...+..+.+-.... ..+
T Consensus       717 ~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpy  796 (1172)
T KOG0213|consen  717 IVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPY  796 (1172)
T ss_pred             HHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccc
Confidence            356677777888888888888887777654333334443344455555555554431 233334444443322210 111


Q ss_pred             hHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhH--HHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHh
Q 014945          150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR--DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF  227 (415)
Q Consensus       150 ~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~--~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l  227 (415)
                      .     ..++..++..|+++.+.++++|+..++.|+.--..+.  ..+-..|.  .|...| ....+++.-.++.++..+
T Consensus       797 l-----pqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEyl-geeypEvLgsILgAikaI  868 (1172)
T KOG0213|consen  797 L-----PQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYL-GEEYPEVLGSILGAIKAI  868 (1172)
T ss_pred             h-----HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhc-CcccHHHHHHHHHHHHHH
Confidence            1     1245677778999999999999999999873222111  11111111  233444 566788888888888777


Q ss_pred             hhCC-CCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHH
Q 014945          228 CRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT  306 (415)
Q Consensus       228 ~~~~-~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~  306 (415)
                      +... -..-..-+.+++|.|...|++....|+++++..++.++...++.+..---..+.=.|+++|.+.+..++..|..+
T Consensus       869 ~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nT  948 (1172)
T KOG0213|consen  869 VNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNT  948 (1172)
T ss_pred             HHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            7554 122233457899999999999999999999999999998766542211111344567788888888999999999


Q ss_pred             HHHhhc--CChHHHHHHHH-----------------------CC---ChHHHHHHhcCCCccchHHHHHHHHHHHhcCCH
Q 014945          307 VGNIVT--GDDMQTQCIIN-----------------------HQ---ALPCLLDLLTQNYKKSIKKEACWTISNITAGNV  358 (415)
Q Consensus       307 l~nl~~--~~~~~~~~~~~-----------------------~~---~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~  358 (415)
                      +|-|+.  |+.+....+++                       +|   ++|.|+.=...+ +..|+.....+++.+.....
T Consensus       949 fG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtP-e~nVQnGVLkalsf~Feyig 1027 (1172)
T KOG0213|consen  949 FGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTP-EANVQNGVLKALSFMFEYIG 1027 (1172)
T ss_pred             hhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCc-hhHHHHhHHHHHHHHHHHHH
Confidence            998875  22222222221                       12   345555544555 67788888888888776322


Q ss_pred             HH-HHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Q 014945          359 NQ-IQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG  399 (415)
Q Consensus       359 ~~-~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~  399 (415)
                      +. .+++..  +.|.|-+.|.+.|.--|..|+.++.+++.+.
T Consensus      1028 emskdYiya--v~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~ 1067 (1172)
T KOG0213|consen 1028 EMSKDYIYA--VTPLLEDALMDRDLVHRQTAMNVIKHLALGV 1067 (1172)
T ss_pred             HHhhhHHHH--hhHHHHHhhccccHHHHHHHHHHHHHHhcCC
Confidence            22 223222  6788888999999999999999999998764

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.86  E-value=2.3e-07  Score=83.72  Aligned_cols=275  Identities=17%  Similarity=0.196  Sum_probs=190.9

Q ss_pred             hhHHHhcCchHHHHHhhcCCCC-hHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHh
Q 014945          107 INEVIQSGVVPRFIEFLSRDDF-PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNV  184 (415)
Q Consensus       107 ~~~~~~~g~i~~L~~ll~~~~~-~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~nl  184 (415)
                      .+.+...|++..|++++..++. ..++.+++..|..+..  .++++.+..-| +..++.+.+. ...+.....+..|+++
T Consensus       173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m  249 (832)
T KOG3678|consen  173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM  249 (832)
T ss_pred             hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence            3456677899999999998872 3569999999999887  67888888876 5555555443 5678899999999999


Q ss_pred             cCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCC-Cchhhh-hchHHHHHHhhcCCChhHHHHHH
Q 014945          185 AGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ-PLFEQT-RPALPALERLIHSNDDEVLTDAC  262 (415)
Q Consensus       185 ~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~-~~~l~~l~~lL~~~d~~v~~~a~  262 (415)
                      ..++.+....+++.|++..++-.+ ...++.+.++++.+|.|++-+... .+...+ ..+-+-|..+-.+.|+-.+..||
T Consensus       250 FKHSeet~~~Lvaa~~lD~vl~~~-rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC  328 (832)
T KOG3678|consen  250 FKHSEETCQRLVAAGGLDAVLYWC-RRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC  328 (832)
T ss_pred             hhhhHHHHHHHHhhcccchheeec-ccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence            999988888899999999998888 677899999999999999877522 222222 33444566666677888999999


Q ss_pred             HHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccch
Q 014945          263 WALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSI  342 (415)
Q Consensus       263 ~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v  342 (415)
                      -+++.++...+-. ..+-.+|.+..+-.++.+-++.-...   --...+.+..        ...+..|+.+|++. .-+.
T Consensus       329 lAV~vlat~KE~E-~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG~~--------~d~LqRLvPlLdS~-R~EA  395 (832)
T KOG3678|consen  329 LAVAVLATNKEVE-REVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQGRG--------PDDLQRLVPLLDSN-RLEA  395 (832)
T ss_pred             HHHhhhhhhhhhh-HHHhhccchhhhhhhhhccCcchhhh---hhhhhhccCC--------hHHHHHhhhhhhcc-hhhh
Confidence            9999998765432 44666777666666665555421111   1111222211        13467889999877 6666


Q ss_pred             HHHHHHHHHHHhc-CC-HHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945          343 KKEACWTISNITA-GN-VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG  398 (415)
Q Consensus       343 ~~~a~~~l~nl~~-~~-~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~  398 (415)
                      +..+++-++.=++ .+ ....+.+-+-|.|..|-++..++|.--.+-|..||.-+-+.
T Consensus       396 q~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEE  453 (832)
T KOG3678|consen  396 QCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEE  453 (832)
T ss_pred             hhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhccc
Confidence            6656555543333 11 12234455778999999998877765556677777666544

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.84  E-value=7.9e-07  Score=79.49  Aligned_cols=263  Identities=11%  Similarity=0.151  Sum_probs=173.5

Q ss_pred             HHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhh-cCCCChHHHHHHHHHHHHHhCCCchhhHHH
Q 014945           76 MVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFL-SRDDFPQLQFEAAWALTNIASGTSENTRVV  153 (415)
Q Consensus        76 l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~  153 (415)
                      +...+++ .+.+....|+.+|..++..  .+....++..+++..++..+ +..-.-++|++.+.|+.-++.. +...+.+
T Consensus       161 l~~~l~~~~~~~~~~~~~rcLQ~ll~~--~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn-~~~ae~~  237 (442)
T KOG2759|consen  161 LKEQLQSSTNNDYIQFAARCLQTLLRV--DEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFN-PHAAEKL  237 (442)
T ss_pred             HHHHHhccCCCchHHHHHHHHHHHhcC--cchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcC-HHHHHHH
Confidence            3344454 5667777888888888754  35555677788899999988 4433379999999999999985 6666777


Q ss_pred             HhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCCc------hhHHHHHhcCChHHHHHHhcc--chhHhHHHHHHHHH
Q 014945          154 IDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSP------KCRDLVLSNGALMPLLAQFNE--HAKLSMLRNATWTL  224 (415)
Q Consensus       154 ~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~nl~~~~~------~~~~~~~~~g~i~~L~~~l~~--~~~~~~~~~a~~~l  224 (415)
                      ...+.|+.|..++++ ..++|.+.++.++.|+....+      ......+.. .+++-++.|..  -.|+++....-..-
T Consensus       238 ~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~-~v~k~l~~L~~rkysDEDL~~di~~L~  316 (442)
T KOG2759|consen  238 KRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLC-KVLKTLQSLEERKYSDEDLVDDIEFLT  316 (442)
T ss_pred             hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhc-CchHHHHHHHhcCCCcHHHHHHHHHHH
Confidence            778999999999986 467899999999999997664      111223333 44555555532  23666655544443


Q ss_pred             HHhhhCC-CCCchhhhhchH-HHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHc--CcHHHHHHhcCCC-Chhh
Q 014945          225 SNFCRGK-PQPLFEQTRPAL-PALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA--GVCPRLVELLRHP-SPSV  299 (415)
Q Consensus       225 ~~l~~~~-~~~~~~~~~~~l-~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~--~~i~~L~~lL~~~-~~~v  299 (415)
                      ..|-... .-..+   .... +.....|+.+... ...-.|-         ++...+-+.  .++..|+.+|... +|.+
T Consensus       317 e~L~~svq~LsSF---DeY~sEl~sG~L~WSP~H-k~e~FW~---------eNa~rlnennyellkiL~~lLe~s~Dp~i  383 (442)
T KOG2759|consen  317 EKLKNSVQDLSSF---DEYKSELRSGRLEWSPVH-KSEKFWR---------ENADRLNENNYELLKILIKLLETSNDPII  383 (442)
T ss_pred             HHHHHHHHhhccH---HHHHHHHHhCCcCCCccc-cccchHH---------HhHHHHhhccHHHHHHHHHHHhcCCCCce
Confidence            3333221 00000   0000 0111112111110 0111110         111222222  3678899999755 5888


Q ss_pred             HHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcC
Q 014945          300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG  356 (415)
Q Consensus       300 ~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~  356 (415)
                      ..-||.=||..+...|+....+.+.|+-..+++++.++ +++||.+|..++-.+..+
T Consensus       384 L~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~-d~~Vry~ALlavQ~lm~~  439 (442)
T KOG2759|consen  384 LCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHE-DPEVRYHALLAVQKLMVH  439 (442)
T ss_pred             eehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCC-CchHHHHHHHHHHHHHhh
Confidence            88999999999999999999888999999999999999 999999999998877653

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.82  E-value=9.1e-06  Score=78.31  Aligned_cols=261  Identities=16%  Similarity=0.209  Sum_probs=159.3

Q ss_pred             hHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHH
Q 014945          116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLV  195 (415)
Q Consensus       116 i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~  195 (415)
                      .+.+.+=|++++ .-+.-.|+.+|++++.  +|....     ..|-+.+++++.++.++..|+.|...+..-.|..-.. 
T Consensus       109 tNslknDL~s~n-q~vVglAL~alg~i~s--~Emard-----lapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~-  179 (866)
T KOG1062|consen  109 TNSLKNDLNSSN-QYVVGLALCALGNICS--PEMARD-----LAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH-  179 (866)
T ss_pred             HHHHHhhccCCC-eeehHHHHHHhhccCC--HHHhHH-----hhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH-
Confidence            455666677777 7788888999999887  554433     4677888999999999999999999988776654333 


Q ss_pred             HhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcC---------------CChhHHHH
Q 014945          196 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS---------------NDDEVLTD  260 (415)
Q Consensus       196 ~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~---------------~d~~v~~~  260 (415)
                          +++..-.+| .+.+..+....+..+..+|...+. .......+.|.++..|+.               +||-++..
T Consensus       180 ----f~~~~~~lL-~ek~hGVL~~~l~l~~e~c~~~~~-~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~  253 (866)
T KOG1062|consen  180 ----FVIAFRKLL-CEKHHGVLIAGLHLITELCKISPD-ALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIR  253 (866)
T ss_pred             ----hhHHHHHHH-hhcCCceeeeHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHH
Confidence                334444444 334444444444444455544221 111122233333333310               24555555


Q ss_pred             HHHHHHHhccCChHHHHHHHH--------------------cCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHH
Q 014945          261 ACWALSYLSDGTNDKIQAVIE--------------------AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQC  320 (415)
Q Consensus       261 a~~~l~~l~~~~~~~~~~~~~--------------------~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~  320 (415)
                      +++.|.-+..++.+..+.+.+                    ...+..+..+  .++..++..|+.+||.+..+.+.++++
T Consensus       254 iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I--~~~~~LrvlainiLgkFL~n~d~NirY  331 (866)
T KOG1062|consen  254 ILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDI--RSNSGLRVLAINILGKFLLNRDNNIRY  331 (866)
T ss_pred             HHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHhcCCccceee
Confidence            555555555544433332211                    0112222222  245668889999999998887765554


Q ss_pred             HHH----------CCCh----HHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHH
Q 014945          321 IIN----------HQAL----PCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKK  386 (415)
Q Consensus       321 ~~~----------~~~l----~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~  386 (415)
                      +--          ..++    ..++.+|+++ |..+|+.|.-.+..+...  .++..     ++..|+++|...+++.+.
T Consensus       332 vaLn~L~r~V~~d~~avqrHr~tIleCL~Dp-D~SIkrralELs~~lvn~--~Nv~~-----mv~eLl~fL~~~d~~~k~  403 (866)
T KOG1062|consen  332 VALNMLLRVVQQDPTAVQRHRSTILECLKDP-DVSIKRRALELSYALVNE--SNVRV-----MVKELLEFLESSDEDFKA  403 (866)
T ss_pred             eehhhHHhhhcCCcHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHhcc--ccHHH-----HHHHHHHHHHhccHHHHH
Confidence            321          1111    4577888888 888999888888877743  33444     355778888888888888


Q ss_pred             HHHHHHHHHhCCCCH
Q 014945          387 EAAWAISNATSGGSN  401 (415)
Q Consensus       387 ~a~~aL~nl~~~~~~  401 (415)
                      ..+.-+..+++.-.+
T Consensus       404 ~~as~I~~laEkfaP  418 (866)
T KOG1062|consen  404 DIASKIAELAEKFAP  418 (866)
T ss_pred             HHHHHHHHHHHhcCC
Confidence            888888888865543

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.79  E-value=4.3e-07  Score=89.31  Aligned_cols=247  Identities=15%  Similarity=0.202  Sum_probs=193.3

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (415)
Q Consensus        72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  151 (415)
                      .+|.+++-|-|+-  -+..|+..|..++... ...+.....-|++|..+++|+++. .+++..-+.+.+.|...++.+..
T Consensus       473 QLPiVLQVLLSQv--HRlRAL~LL~RFLDlG-pWAV~LaLsVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILAvD~SCQ~  548 (1387)
T KOG1517|consen  473 QLPIVLQVLLSQV--HRLRALVLLARFLDLG-PWAVDLALSVGIFPYVLKLLQSSA-RELRPILVFIWAKILAVDPSCQA  548 (1387)
T ss_pred             hcchHHHHHHHHH--HHHHHHHHHHHHhccc-hhhhhhhhccchHHHHHHHhccch-HhhhhhHHHHHHHHHhcCchhHH
Confidence            4566666655432  3566888888888664 666677778899999999999998 89999999999998887799998


Q ss_pred             HHHhCCChHHHHHhhCC-C--CHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhh
Q 014945          152 VVIDHGAVPIFVRLLSS-P--TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  228 (415)
Q Consensus       152 ~~~~~g~i~~L~~ll~~-~--~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~  228 (415)
                      .+++.++-..+++.|.. .  +++-+..|+..|+.|..+-+-.+..+++.+.+...+..|+.+..+-++.-++-+|..|-
T Consensus       549 dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW  628 (1387)
T KOG1517|consen  549 DLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLW  628 (1387)
T ss_pred             HHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHh
Confidence            89988888888888876 2  45889999999999998888888889998899988999955456778888999999999


Q ss_pred             hCCCCCchhhh-hchHHHHHHhhcCCChhHHHHHHHHHHHhccC----ChHHHHHH------------HHcCcH---HHH
Q 014945          229 RGKPQPLFEQT-RPALPALERLIHSNDDEVLTDACWALSYLSDG----TNDKIQAV------------IEAGVC---PRL  288 (415)
Q Consensus       229 ~~~~~~~~~~~-~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~----~~~~~~~~------------~~~~~i---~~L  288 (415)
                      .+.+...+... ..+...|..+|.++-++|+..|+.+|+.+..+    .++.....            ++..+.   -.+
T Consensus       629 ~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~l  708 (1387)
T KOG1517|consen  629 EDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSL  708 (1387)
T ss_pred             hhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHH
Confidence            88766555544 56788899999999999999999999998764    23332222            222222   256


Q ss_pred             HHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHH
Q 014945          289 VELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII  322 (415)
Q Consensus       289 ~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~  322 (415)
                      +..+++..+-++....-+++.++.+.......+.
T Consensus       709 l~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va  742 (1387)
T KOG1517|consen  709 LALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVA  742 (1387)
T ss_pred             HHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHh
Confidence            6777888899999999999999988765554443

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.79  E-value=4e-08  Score=89.85  Aligned_cols=282  Identities=17%  Similarity=0.235  Sum_probs=194.4

Q ss_pred             HHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCc
Q 014945          110 VIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP  189 (415)
Q Consensus       110 ~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~  189 (415)
                      +.+..+.+.|+++|+.++ ..+..-+...++|....-..-+..+...|+|..|+.++.+.+..++....|.+.++..++.
T Consensus       427 L~d~~I~elLi~~Ls~Pe-imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq  505 (743)
T COG5369         427 LLDYPIVELLIDALSNPE-IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQ  505 (743)
T ss_pred             ccccchHHHHHHHhcCcc-ceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCc
Confidence            557778999999999987 7888888889999887666777889999999999999999999999999999999986654


Q ss_pred             hh-HHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCC--Cchhhh------hchHHHHHHhhcCCChhHHHH
Q 014945          190 KC-RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ--PLFEQT------RPALPALERLIHSNDDEVLTD  260 (415)
Q Consensus       190 ~~-~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~--~~~~~~------~~~l~~l~~lL~~~d~~v~~~  260 (415)
                      .. +-..+..-++..++... +++...++..+...+.|+..+...  ......      .-+...+.+.+...+|-....
T Consensus       506 ~~ekf~~Lakig~~kvl~~~-NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~  584 (743)
T COG5369         506 KNEKFKFLAKIGVEKVLSYT-NDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILE  584 (743)
T ss_pred             chhhhhhHHhcCHHHHHHHh-cCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhh
Confidence            32 33455666888999998 888889999999999999874311  111111      235667778888888777778


Q ss_pred             HHHHHHHhccCChHHHHHHHHc-CcHHHHHHhcC-----------CCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChH
Q 014945          261 ACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLR-----------HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALP  328 (415)
Q Consensus       261 a~~~l~~l~~~~~~~~~~~~~~-~~i~~L~~lL~-----------~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~  328 (415)
                      .|..+.+++..+++..+.+.+. .++..+..+|.           +.+..+..+-..+.-++....+.....+.-.   |
T Consensus       585 ~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~---p  661 (743)
T COG5369         585 GCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTT---P  661 (743)
T ss_pred             hHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecccccccccccceecC---C
Confidence            8999999887776655544432 44444444442           1112333333333334433222221111100   1


Q ss_pred             HHHHHhcCC--CccchHHHHHHHHHHHhc---CCH------HHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHh
Q 014945          329 CLLDLLTQN--YKKSIKKEACWTISNITA---GNV------NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT  396 (415)
Q Consensus       329 ~L~~ll~~~--~~~~v~~~a~~~l~nl~~---~~~------~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~  396 (415)
                      .+=.+=+++  .++++-.+..|.+.|+..   ++.      +.++.+++.|+-+.+..+-.++++.|++.+-.||.++-
T Consensus       662 ~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l~  740 (743)
T COG5369         662 HLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALENLR  740 (743)
T ss_pred             CccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhhh
Confidence            111111111  144577788898888764   233      66778888998888888888888999999999998863

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.78  E-value=5.2e-07  Score=84.06  Aligned_cols=304  Identities=15%  Similarity=0.129  Sum_probs=185.9

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhccC-CCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945           73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIE-RSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (415)
Q Consensus        73 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  151 (415)
                      +..++..|++..|.++..|+.....+...- .....+.+...|  ..|.+.|.... +++.-..+.+++.|.+...-...
T Consensus       606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~y-pEvLgsil~Ai~~I~sv~~~~~m  682 (975)
T COG5181         606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDY-PEVLGSILKAICSIYSVHRFRSM  682 (975)
T ss_pred             HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCccc-HHHHHHHHHHHHHHhhhhccccc
Confidence            566778889999999999988766553211 012233444545  34667777766 88877777777766653111100


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC
Q 014945          152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK  231 (415)
Q Consensus       152 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~  231 (415)
                      .---.|++|.|..+|.+.+.++....+..++.|+..+|+....--.-.+--.|+..| .+.+.+++++|..++..+++.-
T Consensus       683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~L-ks~nKeiRR~A~~tfG~Is~ai  761 (975)
T COG5181         683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSL-KSWNKEIRRNATETFGCISRAI  761 (975)
T ss_pred             CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHH-HHhhHHHHHhhhhhhhhHHhhc
Confidence            001148999999999999999999999999999988775322111111233567777 7789999999999999998763


Q ss_pred             CCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhh
Q 014945          232 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV  311 (415)
Q Consensus       232 ~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~  311 (415)
                            .-..++..|+.-|+..+...+....-+++-.+......       .++|.|+.=-..++..++.-.+++++.+.
T Consensus       762 ------GPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpf-------sVlP~lm~dY~TPe~nVQnGvLkam~fmF  828 (975)
T COG5181         762 ------GPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPF-------SVLPTLMSDYETPEANVQNGVLKAMCFMF  828 (975)
T ss_pred             ------CHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCch-------hhHHHHHhcccCchhHHHHhHHHHHHHHH
Confidence                  11345566666666665555544444444444322211       24566666666777788888888887776


Q ss_pred             cCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHH--HHHHHHcCCHHHHHHHhccCCHHHHHHHH
Q 014945          312 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ--IQAIIEAGIIGPLVNLLLNAEFEIKKEAA  389 (415)
Q Consensus       312 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~--~~~l~~~~~i~~L~~~l~~~~~~v~~~a~  389 (415)
                      .......... -.-+.|.|-..|.+. ++.-|..|..++..++-+++..  .+..+.  ++..|..-+-.+.|.+.....
T Consensus       829 eyig~~s~dY-vy~itPlleDAltDr-D~vhRqta~nvI~Hl~Lnc~gtg~eda~IH--LlNllwpNIle~sPhvi~~~~  904 (975)
T COG5181         829 EYIGQASLDY-VYSITPLLEDALTDR-DPVHRQTAMNVIRHLVLNCPGTGDEDAAIH--LLNLLWPNILEPSPHVIQSFD  904 (975)
T ss_pred             HHHHHHHHHH-HHHhhHHHHhhhccc-chHHHHHHHHHHHHHhcCCCCcccHHHHHH--HHHHhhhhccCCCcHHHHHHH
Confidence            5322111111 123566777778777 8888888988888887643211  111111  122233223345666665554


Q ss_pred             HHHHHHhC
Q 014945          390 WAISNATS  397 (415)
Q Consensus       390 ~aL~nl~~  397 (415)
                      ..+..++.
T Consensus       905 Eg~e~~~~  912 (975)
T COG5181         905 EGMESFAT  912 (975)
T ss_pred             HHHHHHHH
Confidence            44444443

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.78  E-value=2.1e-06  Score=73.66  Aligned_cols=269  Identities=15%  Similarity=0.145  Sum_probs=170.5

Q ss_pred             hHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHh--CCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHH
Q 014945          116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVID--HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD  193 (415)
Q Consensus       116 i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~  193 (415)
                      ...++.++.+.+ |.++..|+..+..++..   .-+.+.+  ...++.+.+++....+  .+.|+.++.|++.+.. .++
T Consensus         5 l~elv~ll~~~s-P~v~~~AV~~l~~lt~~---~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~-l~~   77 (353)
T KOG2973|consen    5 LVELVELLHSLS-PPVRKAAVEHLLGLTGR---GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEE-LRK   77 (353)
T ss_pred             HHHHHHHhccCC-hHHHHHHHHHHhhcccc---chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHH-HHH
Confidence            456889999998 99999999999888875   2222222  2457888899887666  7889999999997765 667


Q ss_pred             HHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhh-------hchHHHHHHhhcCC-C-hhHHHHHHHH
Q 014945          194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT-------RPALPALERLIHSN-D-DEVLTDACWA  264 (415)
Q Consensus       194 ~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-------~~~l~~l~~lL~~~-d-~~v~~~a~~~  264 (415)
                      .+++. .+..++..+ .++...+...+|..++|+++.+........       .+.+.....+...+ + ..-....+..
T Consensus        78 ~ll~~-~~k~l~~~~-~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v  155 (353)
T KOG2973|consen   78 KLLQD-LLKVLMDML-TDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV  155 (353)
T ss_pred             HHHHH-HHHHHHHHh-cCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence            77665 666677777 555566788899999999987532221111       23333333444332 1 1234556677


Q ss_pred             HHHhccCChHHHHHHHHcC--cHHHHHHhcCCCChhhHH-HHHHHHHHhhcCChHHHHHHHHC--CChHHHH--------
Q 014945          265 LSYLSDGTNDKIQAVIEAG--VCPRLVELLRHPSPSVLI-PALRTVGNIVTGDDMQTQCIINH--QALPCLL--------  331 (415)
Q Consensus       265 l~~l~~~~~~~~~~~~~~~--~i~~L~~lL~~~~~~v~~-~a~~~l~nl~~~~~~~~~~~~~~--~~l~~L~--------  331 (415)
                      +++++.....+ ..+....  ..+.+..+-+ .+..+|. ..+++|-|.|.....+ ..+++.  .++|.++        
T Consensus       156 f~nls~~~~gR-~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h-~~lL~e~~~lLp~iLlPlagpee  232 (353)
T KOG2973|consen  156 FANLSQFEAGR-KLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLH-EVLLDESINLLPAILLPLAGPEE  232 (353)
T ss_pred             HHHHhhhhhhh-hHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhH-HHHhcchHHHHHHHHhhcCCccc
Confidence            88888766554 2233332  2233444434 4445554 4777888888765433 223332  2233222        


Q ss_pred             -------------HHhcC----CCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccC-CHHHHHHHHHHHH
Q 014945          332 -------------DLLTQ----NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAIS  393 (415)
Q Consensus       332 -------------~ll~~----~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~-~~~v~~~a~~aL~  393 (415)
                                   +++..    ..++.+|+.-.-+|.-+|+. ...+..+.+.|+.+.+-.+-++. ++++++ ||.-+.
T Consensus       233 ~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT-~~GRe~lR~kgvYpilRElhk~e~ded~~~-ace~vv  310 (353)
T KOG2973|consen  233 LSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT-RAGREVLRSKGVYPILRELHKWEEDEDIRE-ACEQVV  310 (353)
T ss_pred             cCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh-hHhHHHHHhcCchHHHHHHhcCCCcHHHHH-HHHHHH
Confidence                         33321    11788999999999999984 45578889999999988887774 455554 555555


Q ss_pred             HHhCC
Q 014945          394 NATSG  398 (415)
Q Consensus       394 nl~~~  398 (415)
                      ++...
T Consensus       311 q~Lv~  315 (353)
T KOG2973|consen  311 QMLVR  315 (353)
T ss_pred             HHHHh
Confidence            55543

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.78  E-value=8.4e-06  Score=76.67  Aligned_cols=310  Identities=17%  Similarity=0.209  Sum_probs=202.8

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (415)
Q Consensus        72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  151 (415)
                      .+..+++.+....+.+|.....++..+...........     +.+.+.++++..+ ..-+..+++.+..+..+.  ...
T Consensus        97 ~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~-----~l~~l~~ll~~~~-~~~~~~aa~~~ag~v~g~--~i~  168 (569)
T KOG1242|consen   97 IIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEY-----VLELLLELLTSTK-IAERAGAAYGLAGLVNGL--GIE  168 (569)
T ss_pred             HHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHH-----HHHHHHHHhcccc-HHHHhhhhHHHHHHHcCc--HHh
Confidence            45777888888889999988888887754432222222     4677888888777 788999999999888753  334


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHH-HHHHHHHhcCC-CchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhh
Q 014945          152 VVIDHGAVPIFVRLLSSPTDDVREQ-AVWALGNVAGD-SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  229 (415)
Q Consensus       152 ~~~~~g~i~~L~~ll~~~~~~v~~~-a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~  229 (415)
                      .+.+.+++..+...+.+.....+.. +..+....++. ++..--.+..  .++.++... .+....++..+..+...+.+
T Consensus       169 ~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~--~lp~il~~~-~d~~~~Vr~Aa~~a~kai~~  245 (569)
T KOG1242|consen  169 SLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVP--ILPSILTNF-GDKINKVREAAVEAAKAIMR  245 (569)
T ss_pred             hhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHh--hHHHHHHHh-hccchhhhHHHHHHHHHHHH
Confidence            5566788999999888754443332 32222222211 1111011111  344444444 45567777777777666654


Q ss_pred             CCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHH
Q 014945          230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN  309 (415)
Q Consensus       230 ~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~n  309 (415)
                      .-+   ...+..++|.++.-+......-...++..++.++...+.+.. ..-..++|.+.+.|-+..+.++..+..+|-+
T Consensus       246 ~~~---~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT~~evr~a~~~~l~~  321 (569)
T KOG1242|consen  246 CLS---AYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDTKPEVRKAGIETLLK  321 (569)
T ss_pred             hcC---cchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccCCHHHHHHHHHHHHH
Confidence            431   122344555555555444555667788888888877776654 4556799999999999999999999999888


Q ss_pred             hhcCCh-HHHHHHH------------------------------HCCCh----HHHHHHhcCCCccchHHHHHHHHHHHh
Q 014945          310 IVTGDD-MQTQCII------------------------------NHQAL----PCLLDLLTQNYKKSIKKEACWTISNIT  354 (415)
Q Consensus       310 l~~~~~-~~~~~~~------------------------------~~~~l----~~L~~ll~~~~~~~v~~~a~~~l~nl~  354 (415)
                      ++.--+ ..++.++                              +.-.+    |.|.+-+... +..+++.++.+++|++
T Consensus       322 ~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eR-st~~kr~t~~IidNm~  400 (569)
T KOG1242|consen  322 FGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAER-STSIKRKTAIIIDNMC  400 (569)
T ss_pred             HHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhc-cchhhhhHHHHHHHHH
Confidence            875321 1122111                              11112    3333333444 6778899999999999


Q ss_pred             c--CCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945          355 A--GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG  398 (415)
Q Consensus       355 ~--~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~  398 (415)
                      .  .++..+..++.. ++|.|-..+.+..|++|..+..||+.+...
T Consensus       401 ~LveDp~~lapfl~~-Llp~lk~~~~d~~PEvR~vaarAL~~l~e~  445 (569)
T KOG1242|consen  401 KLVEDPKDLAPFLPS-LLPGLKENLDDAVPEVRAVAARALGALLER  445 (569)
T ss_pred             HhhcCHHHHhhhHHH-HhhHHHHHhcCCChhHHHHHHHHHHHHHHH
Confidence            8  367777777665 788888888888999999999999887754

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.71  E-value=1.2e-06  Score=80.83  Aligned_cols=318  Identities=11%  Similarity=0.074  Sum_probs=204.4

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (415)
Q Consensus        72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  151 (415)
                      .+++++..+..+|..++..|+..+.+++...+.+....  -..+...+.++..+++ ..++. ++..+-.+..+-.....
T Consensus        85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~--Fn~iFdvL~klsaDsd-~~V~~-~aeLLdRLikdIVte~~  160 (675)
T KOG0212|consen   85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVY--FNEIFDVLCKLSADSD-QNVRG-GAELLDRLIKDIVTESA  160 (675)
T ss_pred             hhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccc--hHHHHHHHHHHhcCCc-ccccc-HHHHHHHHHHHhccccc
Confidence            57889999999999999999999998875442222221  2235667777777766 45543 44444443332111111


Q ss_pred             -HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHH-hcCChHHHHHHhccchhHhHHHHHHHHHHHhhh
Q 014945          152 -VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVL-SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  229 (415)
Q Consensus       152 -~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~-~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~  229 (415)
                       .+-=.+.+|.|-.-+...++..|...+.-|..+-.-++  .+++- -..+++.|..+| .+++.+++..+-.+++++..
T Consensus       161 ~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~--~~m~~yl~~~ldGLf~~L-sD~s~eVr~~~~t~l~~fL~  237 (675)
T KOG0212|consen  161 STFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPD--LEMISYLPSLLDGLFNML-SDSSDEVRTLTDTLLSEFLA  237 (675)
T ss_pred             cccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCc--HHHHhcchHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHH
Confidence             12212455655555666788888777777766643332  23332 122566777788 77788888777777777765


Q ss_pred             CC-CCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChh-hHHHHHHH-
Q 014945          230 GK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS-VLIPALRT-  306 (415)
Q Consensus       230 ~~-~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~-v~~~a~~~-  306 (415)
                      .- ..+........++.++.-++++++.++..|+.-+..+..-.+... ...-+|++..+++++.++++. ++..+... 
T Consensus       238 eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n  316 (675)
T KOG0212|consen  238 EIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLSDTEEMSIKEYAQMVN  316 (675)
T ss_pred             HHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCCCCccccHHHHHHHHH
Confidence            54 333333556788999999999999999888776766665443321 234468888889998877663 44443332 


Q ss_pred             --HHHhhcCChHHHHHHHHC-CChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHH
Q 014945          307 --VGNIVTGDDMQTQCIINH-QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFE  383 (415)
Q Consensus       307 --l~nl~~~~~~~~~~~~~~-~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~  383 (415)
                        +..++.... ..+. ++. .+++.+.+.+.+. ....|..+..-+..+-...|.+.-. ....+++.|++-|.+.+.+
T Consensus       317 ~~l~~l~s~~~-~~~~-id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~ql~~-h~~~if~tLL~tLsd~sd~  392 (675)
T KOG0212|consen  317 GLLLKLVSSER-LKEE-IDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPGQLLV-HNDSIFLTLLKTLSDRSDE  392 (675)
T ss_pred             HHHHHHHhhhh-hccc-cchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcchhhh-hccHHHHHHHHhhcCchhH
Confidence              222222111 1111 333 4578888899888 8888888886666666655554322 2456899999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCH
Q 014945          384 IKKEAAWAISNATSGGSN  401 (415)
Q Consensus       384 v~~~a~~aL~nl~~~~~~  401 (415)
                      |...++..+.+++...+.
T Consensus       393 vvl~~L~lla~i~~s~~~  410 (675)
T KOG0212|consen  393 VVLLALSLLASICSSSNS  410 (675)
T ss_pred             HHHHHHHHHHHHhcCccc
Confidence            999999999999987654

>TIGR02270 conserved hypothetical protein

Probab=98.70  E-value=6.9e-06  Score=76.37  Aligned_cols=241  Identities=17%  Similarity=0.050  Sum_probs=165.0

Q ss_pred             cHHHHHHhhc-CCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh
Q 014945           72 SLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  150 (415)
Q Consensus        72 ~i~~l~~~l~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  150 (415)
                      .++.++..|. ..++.+...++..+...   + .+        ..+..|+..|.+.+ +.++..++..|+.+-..     
T Consensus        55 a~~~L~~aL~~d~~~ev~~~aa~al~~~---~-~~--------~~~~~L~~~L~d~~-~~vr~aaa~ALg~i~~~-----  116 (410)
T TIGR02270        55 ATELLVSALAEADEPGRVACAALALLAQ---E-DA--------LDLRSVLAVLQAGP-EGLCAGIQAALGWLGGR-----  116 (410)
T ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHhcc---C-Ch--------HHHHHHHHHhcCCC-HHHHHHHHHHHhcCCch-----
Confidence            4667777774 45566655554444321   1 11        13788899998887 78999999999865442     


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhC
Q 014945          151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  230 (415)
Q Consensus       151 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~  230 (415)
                            ...+.|+.+|.+.++.++..++.+++..-.            ...+.+...| ++.++.++..++.++..+...
T Consensus       117 ------~a~~~L~~~L~~~~p~vR~aal~al~~r~~------------~~~~~L~~~L-~d~d~~Vra~A~raLG~l~~~  177 (410)
T TIGR02270       117 ------QAEPWLEPLLAASEPPGRAIGLAALGAHRH------------DPGPALEAAL-THEDALVRAAALRALGELPRR  177 (410)
T ss_pred             ------HHHHHHHHHhcCCChHHHHHHHHHHHhhcc------------ChHHHHHHHh-cCCCHHHHHHHHHHHHhhccc
Confidence                  457788889999999999888888876321            1345777888 688899999999999887643


Q ss_pred             CCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHh
Q 014945          231 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI  310 (415)
Q Consensus       231 ~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl  310 (415)
                                ..+|.|...+.+.|+.|+..|++++..+-.  +.         ....+..+...........+..+++..
T Consensus       178 ----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~---------A~~~l~~~~~~~g~~~~~~l~~~lal~  236 (410)
T TIGR02270       178 ----------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--RL---------AWGVCRRFQVLEGGPHRQRLLVLLAVA  236 (410)
T ss_pred             ----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--Hh---------HHHHHHHHHhccCccHHHHHHHHHHhC
Confidence                      456667788889999999999999977643  21         123444433333433444433344333


Q ss_pred             hcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHH
Q 014945          311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAW  390 (415)
Q Consensus       311 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~  390 (415)
                        +.+         ..++.|..+++++ .  ++..++++++.+..  +.         .++.|+..+.+  +.++..|.+
T Consensus       237 --~~~---------~a~~~L~~ll~d~-~--vr~~a~~AlG~lg~--p~---------av~~L~~~l~d--~~~aR~A~e  289 (410)
T TIGR02270       237 --GGP---------DAQAWLRELLQAA-A--TRREALRAVGLVGD--VE---------AAPWCLEAMRE--PPWARLAGE  289 (410)
T ss_pred             --Cch---------hHHHHHHHHhcCh-h--hHHHHHHHHHHcCC--cc---------hHHHHHHHhcC--cHHHHHHHH
Confidence              222         4577888888776 3  89999999997754  33         57778887764  339999999


Q ss_pred             HHHHHhC
Q 014945          391 AISNATS  397 (415)
Q Consensus       391 aL~nl~~  397 (415)
                      ++..++-
T Consensus       290 A~~~ItG  296 (410)
T TIGR02270       290 AFSLITG  296 (410)
T ss_pred             HHHHhhC
Confidence            9999884

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.66  E-value=1.4e-05  Score=73.57  Aligned_cols=250  Identities=26%  Similarity=0.322  Sum_probs=173.3

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (415)
Q Consensus        72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  151 (415)
                      .++.+++.+.+.++.++..++..+..+-..            ..++.+..++.+.+ +.++..|+.+|+.+-..      
T Consensus        44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~------------~av~~l~~~l~d~~-~~vr~~a~~aLg~~~~~------  104 (335)
T COG1413          44 AADELLKLLEDEDLLVRLSAAVALGELGSE------------EAVPLLRELLSDED-PRVRDAAADALGELGDP------  104 (335)
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHhhhchH------------HHHHHHHHHhcCCC-HHHHHHHHHHHHccCCh------
Confidence            678899999999999999999887666432            25899999999999 89999999988876642      


Q ss_pred             HHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchh-----------HhHHHH
Q 014945          152 VVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAK-----------LSMLRN  219 (415)
Q Consensus       152 ~~~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~-----------~~~~~~  219 (415)
                           ..++.++.++. +++..++..+.++|+.+-...           .+.+++..+.+...           ..++..
T Consensus       105 -----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~  168 (335)
T COG1413         105 -----EAVPPLVELLENDENEGVRAAAARALGKLGDER-----------ALDPLLEALQDEDSGSAAAALDAALLDVRAA  168 (335)
T ss_pred             -----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-----------hhHHHHHHhccchhhhhhhhccchHHHHHHH
Confidence                 35888999888 589999999999999884222           36677777733221           123444


Q ss_pred             HHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhh
Q 014945          220 ATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV  299 (415)
Q Consensus       220 a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v  299 (415)
                      +...+..+-.          ...++.+..++.+.+..++..+..+++.+....         ..+.+.+...+.++++.+
T Consensus       169 a~~~l~~~~~----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~v  229 (335)
T COG1413         169 AAEALGELGD----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEV  229 (335)
T ss_pred             HHHHHHHcCC----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHH
Confidence            4444444332          355678888899888999999999999887654         234578888899999999


Q ss_pred             HHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc
Q 014945          300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN  379 (415)
Q Consensus       300 ~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~  379 (415)
                      +..++..+|.+-....           .+.+...+... +..++..+...+...  +...         ....+...+.+
T Consensus       230 r~~~~~~l~~~~~~~~-----------~~~l~~~l~~~-~~~~~~~~~~~~~~~--~~~~---------~~~~l~~~~~~  286 (335)
T COG1413         230 RKAALLALGEIGDEEA-----------VDALAKALEDE-DVILALLAAAALGAL--DLAE---------AALPLLLLLID  286 (335)
T ss_pred             HHHHHHHhcccCcchh-----------HHHHHHHHhcc-chHHHHHHHHHhccc--Cchh---------hHHHHHHHhhc
Confidence            9999999988865432           45566666666 555555555444411  1111         13334444455


Q ss_pred             CCHHHHHHHHHHHHHHhCC
Q 014945          380 AEFEIKKEAAWAISNATSG  398 (415)
Q Consensus       380 ~~~~v~~~a~~aL~nl~~~  398 (415)
                      .+..++..+..++......
T Consensus       287 ~~~~~~~~~~~~l~~~~~~  305 (335)
T COG1413         287 EANAVRLEAALALGQIGQE  305 (335)
T ss_pred             chhhHHHHHHHHHHhhccc
Confidence            5555666666666555544

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.66  E-value=1e-05  Score=77.98  Aligned_cols=291  Identities=16%  Similarity=0.183  Sum_probs=156.2

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHH
Q 014945           74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV  153 (415)
Q Consensus        74 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~  153 (415)
                      ..+.+-|++.+.-++-.|+.++.++.+   .+-++.     +.|.+.+++++.+ +-++..|+.|...+....|+..+.+
T Consensus       110 NslknDL~s~nq~vVglAL~alg~i~s---~Emard-----lapeVe~Ll~~~~-~~irKKA~Lca~r~irK~P~l~e~f  180 (866)
T KOG1062|consen  110 NSLKNDLNSSNQYVVGLALCALGNICS---PEMARD-----LAPEVERLLQHRD-PYIRKKAALCAVRFIRKVPDLVEHF  180 (866)
T ss_pred             HHHHhhccCCCeeehHHHHHHhhccCC---HHHhHH-----hhHHHHHHHhCCC-HHHHHHHHHHHHHHHHcCchHHHHh
Confidence            444555556666666666666666653   223332     2456666666666 6677777766666665555544433


Q ss_pred             Hh----------CCC----hHHHHHhhCCCC------HHHHHHHHHHHHHhcCCC--ch-----hHHHHHhcCChHHHHH
Q 014945          154 ID----------HGA----VPIFVRLLSSPT------DDVREQAVWALGNVAGDS--PK-----CRDLVLSNGALMPLLA  206 (415)
Q Consensus       154 ~~----------~g~----i~~L~~ll~~~~------~~v~~~a~~~L~nl~~~~--~~-----~~~~~~~~g~i~~L~~  206 (415)
                      +.          .|+    +..+..++....      ..+...-+..|.++....  ++     ..+.+++. -+-.+++
T Consensus       181 ~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi-~iLrlLr  259 (866)
T KOG1062|consen  181 VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQI-RILRLLR  259 (866)
T ss_pred             hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHH-HHHHHHH
Confidence            21          122    222223322211      123344444555554221  11     01111111 0112233


Q ss_pred             HhccchhHhHHHHHHHHHHHhhhCCCC-C-------------------chhhhhchHHHHHHhhcCCChhHHHHHHHHHH
Q 014945          207 QFNEHAKLSMLRNATWTLSNFCRGKPQ-P-------------------LFEQTRPALPALERLIHSNDDEVLTDACWALS  266 (415)
Q Consensus       207 ~l~~~~~~~~~~~a~~~l~~l~~~~~~-~-------------------~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~  266 (415)
                      +| -..+.+.-......|..+++.-.. .                   ......-++..|-++|.+.|..++.-++..|.
T Consensus       260 iL-Gq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~  338 (866)
T KOG1062|consen  260 IL-GQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLL  338 (866)
T ss_pred             Hh-cCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHH
Confidence            33 222333333344444444432100 0                   00111234556677777777777777777777


Q ss_pred             HhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHH
Q 014945          267 YLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEA  346 (415)
Q Consensus       267 ~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a  346 (415)
                      .+...++...+.-.     ..++++|++++..++..|+..+-.++...  ++..     .+..|+.+|... ++..+...
T Consensus       339 r~V~~d~~avqrHr-----~tIleCL~DpD~SIkrralELs~~lvn~~--Nv~~-----mv~eLl~fL~~~-d~~~k~~~  405 (866)
T KOG1062|consen  339 RVVQQDPTAVQRHR-----STILECLKDPDVSIKRRALELSYALVNES--NVRV-----MVKELLEFLESS-DEDFKADI  405 (866)
T ss_pred             hhhcCCcHHHHHHH-----HHHHHHhcCCcHHHHHHHHHHHHHHhccc--cHHH-----HHHHHHHHHHhc-cHHHHHHH
Confidence            77766665443222     45889999999999999999998888654  3442     355788999888 89999999


Q ss_pred             HHHHHHHhc-CCHHHHHHH-------------HHcCCHHHHHHHhccCCHHHHHHH
Q 014945          347 CWTISNITA-GNVNQIQAI-------------IEAGIIGPLVNLLLNAEFEIKKEA  388 (415)
Q Consensus       347 ~~~l~nl~~-~~~~~~~~l-------------~~~~~i~~L~~~l~~~~~~v~~~a  388 (415)
                      +.-+..++. ..|+....+             +...++..++.++.+...+....+
T Consensus       406 as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~  461 (866)
T KOG1062|consen  406 ASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYA  461 (866)
T ss_pred             HHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHH
Confidence            888888886 233332211             223346666666665533333333

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=98.64  E-value=2.3e-06  Score=81.47  Aligned_cols=262  Identities=16%  Similarity=0.167  Sum_probs=165.6

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhccCC-CCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCC--chhh
Q 014945           74 PAMVAGVWSDDRNIQLDATTQFRKLLSIER-SPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT--SENT  150 (415)
Q Consensus        74 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~--~~~~  150 (415)
                      ..++..|++..+.++++|+..+..++..-+ ...-+.+-..|+  .|.+.|.... +++.-..+.++..|....  ....
T Consensus       802 stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeey-pEvLgsILgAikaI~nvigm~km~  878 (1172)
T KOG0213|consen  802 STILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEY-PEVLGSILGAIKAIVNVIGMTKMT  878 (1172)
T ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCccc-HHHHHHHHHHHHHHHHhccccccC
Confidence            345567788899999999988877653211 111223444553  4678888776 887665555555544321  1111


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhC
Q 014945          151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  230 (415)
Q Consensus       151 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~  230 (415)
                      ..  -.+++|.|.-+|.+.+.++++.++..++.|+..++++...--.-.+--.|+.+| ...+.++++++..++..++..
T Consensus       879 pP--i~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelL-kahkK~iRRaa~nTfG~Iaka  955 (1172)
T KOG0213|consen  879 PP--IKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELL-KAHKKEIRRAAVNTFGYIAKA  955 (1172)
T ss_pred             CC--hhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhHHHHh
Confidence            11  137899999999999999999999999999987765322111111233567777 778889999999999999876


Q ss_pred             CCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHh
Q 014945          231 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI  310 (415)
Q Consensus       231 ~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl  310 (415)
                      -.      -..++..|+.-|+..+...+....-+|+-.+..+...       .++|.|++--..++..|+.-.+++++.+
T Consensus       956 IG------PqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF-------tVLPalmneYrtPe~nVQnGVLkalsf~ 1022 (1172)
T KOG0213|consen  956 IG------PQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPF-------TVLPALMNEYRTPEANVQNGVLKALSFM 1022 (1172)
T ss_pred             cC------HHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCch-------hhhHHHHhhccCchhHHHHhHHHHHHHH
Confidence            31      1345555666565555444444333444443322211       2456666666677888999898888877


Q ss_pred             hcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcC
Q 014945          311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG  356 (415)
Q Consensus       311 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~  356 (415)
                      ...-.+.....+ .-+.|.|-..|.+. +..-|..|+.++..++-+
T Consensus      1023 FeyigemskdYi-yav~PlleDAlmDr-D~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen 1023 FEYIGEMSKDYI-YAVTPLLEDALMDR-DLVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred             HHHHHHHhhhHH-HHhhHHHHHhhccc-cHHHHHHHHHHHHHHhcC
Confidence            653222111111 13567777777777 888888888888877754

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.64  E-value=1.7e-05  Score=68.29  Aligned_cols=271  Identities=15%  Similarity=0.225  Sum_probs=174.8

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHH--hcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchh
Q 014945           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI--QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  149 (415)
Q Consensus        72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~--~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  149 (415)
                      .+..++.++.+.+|.++..|+..+..+...    +.+.+.  +.-.++.+.+++...+ +  -..|+.++.|++.. ...
T Consensus         4 ~l~elv~ll~~~sP~v~~~AV~~l~~lt~~----~~~~~~~~~~~~lk~l~qL~~~~~-~--~~~a~~alVnlsq~-~~l   75 (353)
T KOG2973|consen    4 ELVELVELLHSLSPPVRKAAVEHLLGLTGR----GLQSLSKYSEALLKDLTQLLKDLD-P--AEPAATALVNLSQK-EEL   75 (353)
T ss_pred             HHHHHHHHhccCChHHHHHHHHHHhhcccc----chhhhccchhhhHHHHHHHccCcc-c--ccHHHHHHHHHHhh-HHH
Confidence            346789999999999999999888887543    222222  3346788999998876 4  67899999999985 666


Q ss_pred             hHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcC-----ChHHHHHHhcc-chh-HhHHHHHHH
Q 014945          150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNG-----ALMPLLAQFNE-HAK-LSMLRNATW  222 (415)
Q Consensus       150 ~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g-----~i~~L~~~l~~-~~~-~~~~~~a~~  222 (415)
                      +..++.. .+..++..+.++...+.+..+..|.|++.+...+........     ++..++....+ +.+ ..-..+.+.
T Consensus        76 ~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~  154 (353)
T KOG2973|consen   76 RKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAP  154 (353)
T ss_pred             HHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHH
Confidence            7777665 677777777777777888999999999998876655544322     34444444323 222 234567788


Q ss_pred             HHHHhhhCCCCCchhhhhchHH--HHHHhhcCCChhHHH-HHHHHHHHhccCChHHHHHHHHc--CcHHHHH--------
Q 014945          223 TLSNFCRGKPQPLFEQTRPALP--ALERLIHSNDDEVLT-DACWALSYLSDGTNDKIQAVIEA--GVCPRLV--------  289 (415)
Q Consensus       223 ~l~~l~~~~~~~~~~~~~~~l~--~l~~lL~~~d~~v~~-~a~~~l~~l~~~~~~~~~~~~~~--~~i~~L~--------  289 (415)
                      +++|+++.............+|  .+..+ .+.+..+|. ..+.+|.|.|-..... ..+++.  ++++.++        
T Consensus       155 vf~nls~~~~gR~l~~~~k~~p~~kll~f-t~~~s~vRr~GvagtlkN~cFd~~~h-~~lL~e~~~lLp~iLlPlagpee  232 (353)
T KOG2973|consen  155 VFANLSQFEAGRKLLLEPKRFPDQKLLPF-TSEDSQVRRGGVAGTLKNCCFDAKLH-EVLLDESINLLPAILLPLAGPEE  232 (353)
T ss_pred             HHHHHhhhhhhhhHhcchhhhhHhhhhcc-cccchhhhccchHHHHHhhhccchhH-HHHhcchHHHHHHHHhhcCCccc
Confidence            8889988764444433333322  33333 335555543 4567777777544332 222222  2223222        


Q ss_pred             -------------HhcC-----CCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHH
Q 014945          290 -------------ELLR-----HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS  351 (415)
Q Consensus       290 -------------~lL~-----~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~  351 (415)
                                   +.|.     .+++.++..-+.+|--+|... ..++.+.+.|+.+.+-.+=+..+++++++ +|.-++
T Consensus       233 ~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~-~GRe~lR~kgvYpilRElhk~e~ded~~~-ace~vv  310 (353)
T KOG2973|consen  233 LSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATR-AGREVLRSKGVYPILRELHKWEEDEDIRE-ACEQVV  310 (353)
T ss_pred             cCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhh-HhHHHHHhcCchHHHHHHhcCCCcHHHHH-HHHHHH
Confidence                         2231     346779999999998888754 46777888888888888777774566555 454444


Q ss_pred             HHhc
Q 014945          352 NITA  355 (415)
Q Consensus       352 nl~~  355 (415)
                      ++..
T Consensus       311 q~Lv  314 (353)
T KOG2973|consen  311 QMLV  314 (353)
T ss_pred             HHHH
Confidence            4443

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.62  E-value=5.1e-07  Score=84.10  Aligned_cols=237  Identities=16%  Similarity=0.170  Sum_probs=156.0

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhH--HHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCC-CC
Q 014945          158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR--DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP-QP  234 (415)
Q Consensus       158 ~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~--~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~-~~  234 (415)
                      ++..++.+|+++.+.++++|+...+.|+.--..|.  ..+...|.  .|..-| ....+++.-..+.++..+..... ..
T Consensus       605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~l-ge~ypEvLgsil~Ai~~I~sv~~~~~  681 (975)
T COG5181         605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENL-GEDYPEVLGSILKAICSIYSVHRFRS  681 (975)
T ss_pred             HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhc-CcccHHHHHHHHHHHHHHhhhhcccc
Confidence            56788889999999999999999998863211111  12222221  233334 45577777777777776665431 11


Q ss_pred             chhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhc--
Q 014945          235 LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT--  312 (415)
Q Consensus       235 ~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~--  312 (415)
                      -..-+.+++|.|...|.+....|..+.+..++.++...++.+..---..+.-.|+..|.+.+.+++..|..++|-|+.  
T Consensus       682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ai  761 (975)
T COG5181         682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAI  761 (975)
T ss_pred             cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhc
Confidence            122347899999999999999999999999999998776543211111344567788888889999999999888875  


Q ss_pred             CChHHHHHHHH-----------------------CCC---hHHHHHHhcCCCccchHHHHHHHHHHHhcCC-HHHHHHHH
Q 014945          313 GDDMQTQCIIN-----------------------HQA---LPCLLDLLTQNYKKSIKKEACWTISNITAGN-VNQIQAII  365 (415)
Q Consensus       313 ~~~~~~~~~~~-----------------------~~~---l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~-~~~~~~l~  365 (415)
                      |+.+....+++                       .|.   +|.|+.=...+ +..|+.....+++.+.... ....+++.
T Consensus       762 GPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TP-e~nVQnGvLkam~fmFeyig~~s~dYvy  840 (975)
T COG5181         762 GPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETP-EANVQNGVLKAMCFMFEYIGQASLDYVY  840 (975)
T ss_pred             CHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCc-hhHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            22222222221                       233   34444444455 6678888888887776521 12223333


Q ss_pred             HcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCC
Q 014945          366 EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS  400 (415)
Q Consensus       366 ~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~  400 (415)
                      .  +.|.|-+.|.+.|+--|..|...+.+++.+++
T Consensus       841 ~--itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~  873 (975)
T COG5181         841 S--ITPLLEDALTDRDPVHRQTAMNVIRHLVLNCP  873 (975)
T ss_pred             H--hhHHHHhhhcccchHHHHHHHHHHHHHhcCCC
Confidence            2  67888889999999999999999999987653

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.61  E-value=2.4e-05  Score=74.61  Aligned_cols=260  Identities=15%  Similarity=0.169  Sum_probs=183.0

Q ss_pred             chHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHH
Q 014945          115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL  194 (415)
Q Consensus       115 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~  194 (415)
                      +-+-++.+|+++- +-+|..|+.++..+....|+...     ..+|.|..-|.++|+.|+..|+..++.|+..+|..  .
T Consensus       145 La~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn--y  216 (877)
T KOG1059|consen  145 LADDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN--Y  216 (877)
T ss_pred             HHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc--c
Confidence            3456778888888 89999999999998876555433     36899999999999999999999999999888753  1


Q ss_pred             HHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCC-hhHHHHHHHHHH--HhccC
Q 014945          195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSND-DEVLTDACWALS--YLSDG  271 (415)
Q Consensus       195 ~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d-~~v~~~a~~~l~--~l~~~  271 (415)
                       +  ..-|.+..+|..+.|.-+....+-.+.+|+...|    .....++|.|..++++.. ..+...++.++.  +++.+
T Consensus       217 -L--~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEP----RLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g  289 (877)
T KOG1059|consen  217 -L--QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEP----RLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSG  289 (877)
T ss_pred             -c--cccHHHHHHHhccCCCeehHHHHHHHhhccccCc----hhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence             1  1456677777666676677777778888875533    233567888888887764 445555555543  33333


Q ss_pred             ChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHH
Q 014945          272 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS  351 (415)
Q Consensus       272 ~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~  351 (415)
                      .++... .+. =+++.|-.++.+.++.++-.++.+++.++...+..++.     --+.++++|.+. |+.+|-.|.-.+.
T Consensus       290 ~~d~~a-siq-LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~Dk-D~SIRlrALdLl~  361 (877)
T KOG1059|consen  290 MSDHSA-SIQ-LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDK-DESIRLRALDLLY  361 (877)
T ss_pred             CCCcHH-HHH-HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccC-CchhHHHHHHHHH
Confidence            211111 111 14688888889999999999999999999887765553     245789999999 9999999999998


Q ss_pred             HHhcCCHHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHHHHHHHHHhCCCCHHHH
Q 014945          352 NITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNATSGGSNEQI  404 (415)
Q Consensus       352 nl~~~~~~~~~~l~~~~~i~~L~~~l~~-~~~~v~~~a~~aL~nl~~~~~~~~~  404 (415)
                      -+..  .+++..+     +..|+..+.. +....|.+.+.-+..++...+++.+
T Consensus       362 gmVs--kkNl~eI-----Vk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~I  408 (877)
T KOG1059|consen  362 GMVS--KKNLMEI-----VKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYI  408 (877)
T ss_pred             HHhh--hhhHHHH-----HHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhh
Confidence            8885  3444443     3444444443 3346777777666666665555544

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.60  E-value=2.1e-05  Score=74.12  Aligned_cols=231  Identities=15%  Similarity=0.129  Sum_probs=163.8

Q ss_pred             chHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHH
Q 014945          115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL  194 (415)
Q Consensus       115 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~  194 (415)
                      ++..|+.-++.+. +.+|.....||..+.........    .-+.+.+.+++......-+..+.+.++.+..+...  ..
T Consensus        97 ~~~~~~~~~~tps-~~~q~~~~~~l~~~~~~~~~~~~----~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i--~~  169 (569)
T KOG1242|consen   97 IIEILLEELDTPS-KSVQRAVSTCLPPLVVLSKGLSG----EYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGI--ES  169 (569)
T ss_pred             HHHHHHHhcCCCc-HHHHHHHHHHhhhHHHHhhccCH----HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHH--hh
Confidence            5678888888888 99999999999876653221111    12467788888888888888999999999877653  56


Q ss_pred             HHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh-
Q 014945          195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN-  273 (415)
Q Consensus       195 ~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~-  273 (415)
                      +.+.+++..+...+.+..+..-++.+..+.-..+..-.......+...+|.++..+.+..+.++..+..+...+...-+ 
T Consensus       170 ~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~  249 (569)
T KOG1242|consen  170 LKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA  249 (569)
T ss_pred             hhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc
Confidence            6677888888888843333333333444444444443444455667788888888888889999888777766543222 


Q ss_pred             HHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHH
Q 014945          274 DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI  353 (415)
Q Consensus       274 ~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl  353 (415)
                      ....     -+++.++.-+....|.....++..+|.++...+.+.. ..-..++|.+.+.|.+. .+.+|+.+..++.++
T Consensus       250 ~aVK-----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT-~~evr~a~~~~l~~~  322 (569)
T KOG1242|consen  250 YAVK-----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDT-KPEVRKAGIETLLKF  322 (569)
T ss_pred             chhh-----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence            1111     1345555555455888899999999999988886655 34448999999999999 999999999999999


Q ss_pred             hc--CCHH
Q 014945          354 TA--GNVN  359 (415)
Q Consensus       354 ~~--~~~~  359 (415)
                      +.  .+++
T Consensus       323 ~svidN~d  330 (569)
T KOG1242|consen  323 GSVIDNPD  330 (569)
T ss_pred             HHhhccHH
Confidence            87  4544

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.59  E-value=5.8e-06  Score=75.95  Aligned_cols=314  Identities=17%  Similarity=0.172  Sum_probs=194.0

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCC-ChHHHHHHHHHHHHHhCCCchhhHH
Q 014945           74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSENTRV  152 (415)
Q Consensus        74 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~~i~~~a~~~L~~l~~~~~~~~~~  152 (415)
                      +.+...+-+++.+++-.+.+.+|.++..  ....+.+.+.++--.++..|..++ +..-|.+|+..+..+..-.. ..+ 
T Consensus        28 ~~i~~~lL~~~~~vraa~yRilRy~i~d--~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~-~~~-  103 (371)
T PF14664_consen   28 ERIQCMLLSDSKEVRAAGYRILRYLISD--EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK-GPK-  103 (371)
T ss_pred             HHHHHHHCCCcHHHHHHHHHHHHHHHcC--HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC-Ccc-
Confidence            3444345555688899999999998864  466677777776666666666543 35678899999988776421 111 


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCC
Q 014945          153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP  232 (415)
Q Consensus       153 ~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~  232 (415)
                      .+..|++..++.+..++++.++..|+.+|+.++-.+|   +.+...|++..|++.+.+ ...++...++.++.++...+.
T Consensus       104 ~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d-~~~~~~~~l~~~lL~lLd~p~  179 (371)
T PF14664_consen  104 EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALID-GSFSISESLLDTLLYLLDSPR  179 (371)
T ss_pred             cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHh-ccHhHHHHHHHHHHHHhCCcc
Confidence            1245788999999999999999999999999998888   478899999999999954 444488899999999998764


Q ss_pred             CCchhhhhchHHHHHHhhcC-------CCh--hHHHHHHHHHHHhccCChHHHHHHHH-cCcHHHHHHhcCCCChhhHHH
Q 014945          233 QPLFEQTRPALPALERLIHS-------NDD--EVLTDACWALSYLSDGTNDKIQAVIE-AGVCPRLVELLRHPSPSVLIP  302 (415)
Q Consensus       233 ~~~~~~~~~~l~~l~~lL~~-------~d~--~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~i~~L~~lL~~~~~~v~~~  302 (415)
                      .........-+..+..-+.+       ++.  +-...+..++..+...=++....-.+ ...+..|+..|..+++.++..
T Consensus       180 tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~  259 (371)
T PF14664_consen  180 TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKA  259 (371)
T ss_pred             hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHH
Confidence            44333222223333222211       122  34455555665554332222211111 146788999999999999999


Q ss_pred             HHHHHHHhhcCChH-HHHHH------HHCCChHHHHHHh---cCCCccchHHHHHHHHHHHhcC-CHHHHHHHHHcCCHH
Q 014945          303 ALRTVGNIVTGDDM-QTQCI------INHQALPCLLDLL---TQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIG  371 (415)
Q Consensus       303 a~~~l~nl~~~~~~-~~~~~------~~~~~l~~L~~ll---~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~i~  371 (415)
                      .+..+-.+..-... .....      ...|-...-.++-   ... ....... ..--.++..+ ..--...+++.|+++
T Consensus       260 Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~-~~~~~~~-~~~~~~l~~~y~aLll~ili~~gL~~  337 (371)
T PF14664_consen  260 ILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEA-KSILPHR-SSKRPNLVNHYLALLLAILIEAGLLE  337 (371)
T ss_pred             HHHHHHHHHCCCCCCcccchhhcccccccccccchhhhccccccc-ccccCcc-ccccccHHHHHHHHHHHHHHHcChHH
Confidence            99888887753221 11111      1111110000000   000 0000000 0001122211 112234567899999


Q ss_pred             HHHHHhccC-CHHHHHHHHHHHHHHhC
Q 014945          372 PLVNLLLNA-EFEIKKEAAWAISNATS  397 (415)
Q Consensus       372 ~L~~~l~~~-~~~v~~~a~~aL~nl~~  397 (415)
                      .|+++..+. +..+...|...|+++..
T Consensus       338 ~L~~li~~~~d~~l~~KAtlLL~elL~  364 (371)
T PF14664_consen  338 ALVELIESSEDSSLSRKATLLLGELLH  364 (371)
T ss_pred             HHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            999999986 88899999999988763

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.58  E-value=1.9e-06  Score=82.77  Aligned_cols=303  Identities=18%  Similarity=0.193  Sum_probs=161.3

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHH
Q 014945           73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV  152 (415)
Q Consensus        73 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~  152 (415)
                      ..++.+.++++++-++..++....++.    ....+...+.|+++.|-.++.+++ +.+...|+.+|..|...++.....
T Consensus       123 ~~Pl~~~l~d~~~yvRktaa~~vakl~----~~~~~~~~~~gl~~~L~~ll~D~~-p~VVAnAlaaL~eI~e~~~~~~~~  197 (734)
T KOG1061|consen  123 CDPLLKCLKDDDPYVRKTAAVCVAKLF----DIDPDLVEDSGLVDALKDLLSDSN-PMVVANALAALSEIHESHPSVNLL  197 (734)
T ss_pred             HHHHHHhccCCChhHHHHHHHHHHHhh----cCChhhccccchhHHHHHHhcCCC-chHHHHHHHHHHHHHHhCCCCCcc
Confidence            467888889999999999999999885    455667778999999999999887 999999999999999876542222


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCC
Q 014945          153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP  232 (415)
Q Consensus       153 ~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~  232 (415)
                      .+....+..++..+..-++=-+...+.++.+..-.++  ++..   .++..+...| ++.+..+.-.+.-++.++....+
T Consensus       198 ~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~--~ea~---~i~~r~~p~L-qh~n~avvlsavKv~l~~~~~~~  271 (734)
T KOG1061|consen  198 ELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS--REAE---DICERLTPRL-QHANSAVVLSAVKVILQLVKYLK  271 (734)
T ss_pred             cccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc--hhHH---HHHHHhhhhh-ccCCcceEeehHHHHHHHHHHHH
Confidence            2222223333333322222112222223332222211  0110   1223333333 33333333333333333333221


Q ss_pred             CCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChH----------------------HHHH----HHHcC---
Q 014945          233 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND----------------------KIQA----VIEAG---  283 (415)
Q Consensus       233 ~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~----------------------~~~~----~~~~~---  283 (415)
                      ..........-|.++.++.... +++.-++.=+.-+....++                      ..+.    ..+++   
T Consensus       272 ~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~q  350 (734)
T KOG1061|consen  272 QVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQ  350 (734)
T ss_pred             HHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHH
Confidence            1111112222333333333222 2222222222211111110                      0000    01111   


Q ss_pred             cHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHH
Q 014945          284 VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQA  363 (415)
Q Consensus       284 ~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~  363 (415)
                      ++..+...-..-+.+....+++++|+++..-++.      +++++.|+.++... ...+..+++..+..+....|.....
T Consensus       351 vl~El~eYatevD~~fvrkaIraig~~aik~e~~------~~cv~~lLell~~~-~~yvvqE~~vvi~dilRkyP~~~~~  423 (734)
T KOG1061|consen  351 VLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS------NDCVSILLELLETK-VDYVVQEAIVVIRDILRKYPNKYES  423 (734)
T ss_pred             HHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh------hhhHHHHHHHHhhc-ccceeeehhHHHHhhhhcCCCchhh
Confidence            1222222233456788899999999998754422      57888899999877 6677777888888777754443222


Q ss_pred             HHHcCCHHHHHHHhcc-CCHHHHHHHHHHHHHHhCCC
Q 014945          364 IIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNATSGG  399 (415)
Q Consensus       364 l~~~~~i~~L~~~l~~-~~~~v~~~a~~aL~nl~~~~  399 (415)
                           +++.+...+.+ ++|+.|....|.++.-+..-
T Consensus       424 -----vv~~l~~~~~sl~epeak~amiWilg~y~~~i  455 (734)
T KOG1061|consen  424 -----VVAILCENLDSLQEPEAKAALIWILGEYAERI  455 (734)
T ss_pred             -----hhhhhcccccccCChHHHHHHHHHHhhhhhcc
Confidence                 33444444444 56777777777777776543

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.58  E-value=3.5e-06  Score=82.34  Aligned_cols=311  Identities=15%  Similarity=0.164  Sum_probs=183.0

Q ss_pred             HHHHHhhcC--CCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945           74 PAMVAGVWS--DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (415)
Q Consensus        74 ~~l~~~l~~--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  151 (415)
                      ...++.|..  .|.+++..|+.++..++..-. +..... -...++.|++-+..   +-.|..|+++++.|+...-....
T Consensus       571 ~~tl~rL~a~d~DqeVkeraIscmgq~i~~fg-D~l~~e-L~~~L~il~eRl~n---EiTRl~AvkAlt~Ia~S~l~i~l  645 (1233)
T KOG1824|consen  571 DCTLQRLKATDSDQEVKERAISCMGQIIANFG-DFLGNE-LPRTLPILLERLGN---EITRLTAVKALTLIAMSPLDIDL  645 (1233)
T ss_pred             HHHHHHHhcccccHHHHHHHHHHHHHHHHHHh-hhhhhh-hHHHHHHHHHHHhc---hhHHHHHHHHHHHHHhccceeeh
Confidence            334455554  467888888888877765331 111111 11245555555543   66799999999999986443332


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCch-hHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhC
Q 014945          152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK-CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  230 (415)
Q Consensus       152 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~-~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~  230 (415)
                      .-+-..+++.+..++......++...+.++-.+...... .....++ -++..+..++ ..++..+...+..++..+...
T Consensus       646 ~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e-~vL~el~~Li-sesdlhvt~~a~~~L~tl~~~  723 (1233)
T KOG1824|consen  646 SPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLE-AVLVELPPLI-SESDLHVTQLAVAFLTTLAII  723 (1233)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH-HHHHHhhhhh-hHHHHHHHHHHHHHHHHHHhc
Confidence            222235688888888877777777777776666532111 1111111 1344555555 667778888999999999988


Q ss_pred             CCCCchhhhhchHHHHHHhhcCCCh--hHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCCh-----hhHHHH
Q 014945          231 KPQPLFEQTRPALPALERLIHSNDD--EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP-----SVLIPA  303 (415)
Q Consensus       231 ~~~~~~~~~~~~l~~l~~lL~~~d~--~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~-----~v~~~a  303 (415)
                      .|.........+++.++.+++++--  .....++..+.-+........      + +..++.++..+-.     .+...|
T Consensus       724 ~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l------~-y~~l~s~lt~PV~~~~~~~l~kqa  796 (1233)
T KOG1824|consen  724 QPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDL------D-YISLLSLLTAPVYEQVTDGLHKQA  796 (1233)
T ss_pred             ccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCc------c-HHHHHHHHcCCcccccccchhHHH
Confidence            7766666667889999999987632  222222222222222211111      1 3445555543311     123333


Q ss_pred             ----HHHHHHhhcCChHHHHHHHHCCChHHH-HHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhc
Q 014945          304 ----LRTVGNIVTGDDMQTQCIINHQALPCL-LDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL  378 (415)
Q Consensus       304 ----~~~l~nl~~~~~~~~~~~~~~~~l~~L-~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~  378 (415)
                          ..|.+.++...++...     .....+ ..+.+...+..++..|...++.+..+...    .-..++...+++.+.
T Consensus       797 ~~siA~cvA~Lt~~~~~~s~-----s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~----s~~~e~~~~iieaf~  867 (1233)
T KOG1824|consen  797 YYSIAKCVAALTCACPQKSK-----SLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDL----SPQNELKDTIIEAFN  867 (1233)
T ss_pred             HHHHHHHHHHHHHhccccch-----hHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCC----CcchhhHHHHHHHcC
Confidence                3344444433331111     122233 34444444678888999999999874111    112335557888899


Q ss_pred             cCCHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014945          379 NAEFEIKKEAAWAISNATSGGSNEQIKYK  407 (415)
Q Consensus       379 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~l  407 (415)
                      +++.+|+.+|.+||++++.+.-+..++++
T Consensus       868 sp~edvksAAs~ALGsl~vgnl~~yLpfi  896 (1233)
T KOG1824|consen  868 SPSEDVKSAASYALGSLAVGNLPKYLPFI  896 (1233)
T ss_pred             CChHHHHHHHHHHhhhhhcCchHhHHHHH
Confidence            99999999999999999998777777666

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=6.3e-05  Score=74.74  Aligned_cols=313  Identities=16%  Similarity=0.170  Sum_probs=203.2

Q ss_pred             HHHHHHHHHHHHhccCCCCchhH-----HHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHH
Q 014945           87 IQLDATTQFRKLLSIERSPPINE-----VIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPI  161 (415)
Q Consensus        87 ~~~~a~~~l~~l~~~~~~~~~~~-----~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~  161 (415)
                      -...++.+|+++++..  +....     ..--|.++.+..++.....+.++..|+.++..+.. +.++...+...|.+..
T Consensus      1741 ~v~m~LtAL~Nli~~n--PdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~ 1817 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSAN--PDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTT 1817 (2235)
T ss_pred             HHHHHHHHHHHHHhhC--cchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHH
Confidence            4556899999998764  32222     22346788888888875548999999999987777 4888889999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC-CCCc-hhhh
Q 014945          162 FVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPL-FEQT  239 (415)
Q Consensus       162 L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~-~~~~  239 (415)
                      |+.+|.+ -+..++.++.+|..++.... ......+.|++..+..++..+++...+..++..+..+...+ ..+. ....
T Consensus      1818 LL~lLHS-~PS~R~~vL~vLYAL~S~~~-i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL 1895 (2235)
T KOG1789|consen 1818 LLTLLHS-QPSMRARVLDVLYALSSNGQ-IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITL 1895 (2235)
T ss_pred             HHHHHhc-ChHHHHHHHHHHHHHhcCcH-HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeeh
Confidence            9999976 46789999999999987765 55677889999999999988888999999999999998876 2221 1111


Q ss_pred             hchH------------HHHHHhhcC--CChhH------HHHHHHHHHHhcc--------C------ChHH----------
Q 014945          240 RPAL------------PALERLIHS--NDDEV------LTDACWALSYLSD--------G------TNDK----------  275 (415)
Q Consensus       240 ~~~l------------~~l~~lL~~--~d~~v------~~~a~~~l~~l~~--------~------~~~~----------  275 (415)
                      ..++            +..+++++.  .++++      +...-..+..+..        +      -++.          
T Consensus      1896 ~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E 1975 (2235)
T KOG1789|consen 1896 IKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKE 1975 (2235)
T ss_pred             HHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccC
Confidence            2222            234444432  22221      1111222222211        0      0000          


Q ss_pred             --------HHHH------------HHcCcHHHHHHhcCCCCh--hhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHH
Q 014945          276 --------IQAV------------IEAGVCPRLVELLRHPSP--SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL  333 (415)
Q Consensus       276 --------~~~~------------~~~~~i~~L~~lL~~~~~--~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~l  333 (415)
                              ...+            +-.+.++.+.+++..+++  ........++-.+....+...+.+-..|.+|.++..
T Consensus      1976 ~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~A 2055 (2235)
T KOG1789|consen 1976 CAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTA 2055 (2235)
T ss_pred             cccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHH
Confidence                    0001            112445556666654432  222223334444555566666666677999999999


Q ss_pred             hcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014945          334 LTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYK  407 (415)
Q Consensus       334 l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l  407 (415)
                      +... +..+-+.|..+|..++.+ .-+.+.+.....+..++..|.. .+....-|+.+|..+......+.+...
T Consensus      2056 m~~~-n~s~P~SaiRVlH~Lsen-~~C~~AMA~l~~i~~~m~~mkK-~~~~~GLA~EalkR~~~r~~~eLVAQ~ 2126 (2235)
T KOG1789|consen 2056 MCLQ-NTSAPRSAIRVLHELSEN-QFCCDAMAQLPCIDGIMKSMKK-QPSLMGLAAEALKRLMKRNTGELVAQM 2126 (2235)
T ss_pred             HHhc-CCcCcHHHHHHHHHHhhc-cHHHHHHhccccchhhHHHHHh-cchHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            9887 777778899999988874 4556666665566667777663 344555788888888776554444333

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.55  E-value=0.00027  Score=61.58  Aligned_cols=323  Identities=14%  Similarity=0.151  Sum_probs=217.7

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCc---hhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchh
Q 014945           73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPP---INEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  149 (415)
Q Consensus        73 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~---~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  149 (415)
                      .|.|-..|..+|..++..++..+..++...+...   +..++..|+++.++.++-.++ .++-..|...+..++.. +..
T Consensus        84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrialf-paa  161 (524)
T KOG4413|consen   84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIALF-PAA  161 (524)
T ss_pred             hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHhc-HHH
Confidence            3556667778888899989988887775432112   233558899999999999988 89999999999999985 777


Q ss_pred             hHHHHhCCChHHH--HHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHh
Q 014945          150 TRVVIDHGAVPIF--VRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF  227 (415)
Q Consensus       150 ~~~~~~~g~i~~L--~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l  227 (415)
                      .+.++++...+.+  .++.-..+.-.+..++..+..|.+-++.....+..+|.+..|..-+....+.-++.+++.....|
T Consensus       162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL  241 (524)
T KOG4413|consen  162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL  241 (524)
T ss_pred             HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH
Confidence            7777777666543  22333456667778889999999999888888999999999988885557888999999999999


Q ss_pred             hhCCCCCchhhhhchHHHHHHhhcCC--ChhHHHHHHHHHHHhccCChH---HHHHHHHc--CcHHHHHHhcCCCChhhH
Q 014945          228 CRGKPQPLFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSDGTND---KIQAVIEA--GVCPRLVELLRHPSPSVL  300 (415)
Q Consensus       228 ~~~~~~~~~~~~~~~l~~l~~lL~~~--d~~v~~~a~~~l~~l~~~~~~---~~~~~~~~--~~i~~L~~lL~~~~~~v~  300 (415)
                      ........+....+++..+...+.-.  +|--.-.++...+.+.....-   .-+.+++.  -+++...+.....+++.+
T Consensus       242 aeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdai  321 (524)
T KOG4413|consen  242 AETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAI  321 (524)
T ss_pred             HHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHH
Confidence            98776677777788888888777533  443333344444443321100   00111111  234455566677889999


Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHCCC--hHHHHHHhcCCCccchHHHHHHHHHHHhcC---CHHHHH----------HHH
Q 014945          301 IPALRTVGNIVTGDDMQTQCIINHQA--LPCLLDLLTQNYKKSIKKEACWTISNITAG---NVNQIQ----------AII  365 (415)
Q Consensus       301 ~~a~~~l~nl~~~~~~~~~~~~~~~~--l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~---~~~~~~----------~l~  365 (415)
                      ..|+.++|.+.+... ..+.+...|-  ...++.-.-+.....-+..+..+|.+|+..   .++++.          .+.
T Consensus       322 eaAiDalGilGSnte-GadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclif  400 (524)
T KOG4413|consen  322 EAAIDALGILGSNTE-GADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIF  400 (524)
T ss_pred             HHHHHHHHhccCCcc-hhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHH
Confidence            999999999987654 5555555442  333433333331333456677888888862   333321          111


Q ss_pred             Hc-------CCHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945          366 EA-------GIIGPLVNLLLNAEFEIKKEAAWAISNATSG  398 (415)
Q Consensus       366 ~~-------~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~  398 (415)
                      ++       .-...+..+++.+.++++..+...+.-++..
T Consensus       401 daaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaq  440 (524)
T KOG4413|consen  401 DAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQ  440 (524)
T ss_pred             HHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcC
Confidence            11       2245566677778899999998888877743

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.54  E-value=2.3e-07  Score=56.01  Aligned_cols=41  Identities=46%  Similarity=0.690  Sum_probs=38.4

Q ss_pred             CHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhC
Q 014945          357 NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  397 (415)
Q Consensus       357 ~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~  397 (415)
                      ++++++.+++.|++|.|+++|.+++++++++|+|+|+|++.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            47889999999999999999999999999999999999973

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.54  E-value=4.7e-05  Score=73.47  Aligned_cols=306  Identities=16%  Similarity=0.187  Sum_probs=201.3

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh
Q 014945           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  150 (415)
Q Consensus        71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  150 (415)
                      +-++.+++.....|.+.+..+-..+.+.+...   +...   .+.++.+++=..+++ +.+|.-|++.++.+-.+  ...
T Consensus        49 slF~dvvk~~~T~dlelKKlvyLYl~nYa~~~---P~~a---~~avnt~~kD~~d~n-p~iR~lAlrtm~~l~v~--~i~  119 (734)
T KOG1061|consen   49 SLFPDVVKCMQTRDLELKKLVYLYLMNYAKGK---PDLA---ILAVNTFLKDCEDPN-PLIRALALRTMGCLRVD--KIT  119 (734)
T ss_pred             hhhHHHHhhcccCCchHHHHHHHHHHHhhccC---chHH---HhhhhhhhccCCCCC-HHHHHHHhhceeeEeeh--HHH
Confidence            35688999999999888888888888887543   2222   235778888888888 99999998888766552  222


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhC
Q 014945          151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  230 (415)
Q Consensus       151 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~  230 (415)
                      ..     +...+...+++.++.++..+.-+..++-..++   +.+...|.++.|-.++ .+.++.+..+|+.++..+...
T Consensus       120 ey-----~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll-~D~~p~VVAnAlaaL~eI~e~  190 (734)
T KOG1061|consen  120 EY-----LCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLL-SDSNPMVVANALAALSEIHES  190 (734)
T ss_pred             HH-----HHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHh-cCCCchHHHHHHHHHHHHHHh
Confidence            22     46788999999999999999999999976665   5778889999999999 688999999999999999988


Q ss_pred             CCC-CchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHH
Q 014945          231 KPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN  309 (415)
Q Consensus       231 ~~~-~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~n  309 (415)
                      .+. .........+..++..+..-++.-+...+.++.+-...++...+     .++.++...|.+.+..+...+...+-+
T Consensus       191 ~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~-----~i~~r~~p~Lqh~n~avvlsavKv~l~  265 (734)
T KOG1061|consen  191 HPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAE-----DICERLTPRLQHANSAVVLSAVKVILQ  265 (734)
T ss_pred             CCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHH-----HHHHHhhhhhccCCcceEeehHHHHHH
Confidence            753 34444455556666666555666666666666665544442222     246778888888887777777777776


Q ss_pred             hhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHH-------------------------HH
Q 014945          310 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQ-------------------------AI  364 (415)
Q Consensus       310 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~-------------------------~l  364 (415)
                      .....+.... .+-...-+.++.++.+. . .+.-.|..-+.-+....|+...                         .+
T Consensus       266 ~~~~~~~~~~-~~~~K~~~pl~tlls~~-~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~l  342 (734)
T KOG1061|consen  266 LVKYLKQVNE-LLFKKVAPPLVTLLSSE-S-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIEL  342 (734)
T ss_pred             HHHHHHHHHH-HHHHHhcccceeeeccc-c-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHH
Confidence            6654443222 22224445555555444 2 3332222222222222222110                         00


Q ss_pred             H-HcC---CHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCHH
Q 014945          365 I-EAG---IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNE  402 (415)
Q Consensus       365 ~-~~~---~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~  402 (415)
                      . +.+   ++..+......-|.+...+|.+|+++++......
T Consensus       343 a~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~  384 (734)
T KOG1061|consen  343 ANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS  384 (734)
T ss_pred             hhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh
Confidence            0 011   3444444445578888899999999999765443

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.54  E-value=2.1e-05  Score=72.90  Aligned_cols=303  Identities=13%  Similarity=0.167  Sum_probs=194.9

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHH-hcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCC---Cchh
Q 014945           74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI-QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASG---TSEN  149 (415)
Q Consensus        74 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~---~~~~  149 (415)
                      |.+-+.+.-.++..+...+..+..+-+.   |..+.+- -..+++-|.++|++++ ++++..+=.++.++...   +|..
T Consensus       170 pLL~eriy~~n~~tR~flv~Wl~~Lds~---P~~~m~~yl~~~ldGLf~~LsD~s-~eVr~~~~t~l~~fL~eI~s~P~s  245 (675)
T KOG0212|consen  170 PLLRERIYVINPMTRQFLVSWLYVLDSV---PDLEMISYLPSLLDGLFNMLSDSS-DEVRTLTDTLLSEFLAEIRSSPSS  245 (675)
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHhcC---CcHHHHhcchHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHHhcCccc
Confidence            3344444467888888888777777543   3333322 2346788889999988 89987766655543321   2322


Q ss_pred             hHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHH---HHHHH
Q 014945          150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNAT---WTLSN  226 (415)
Q Consensus       150 ~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~---~~l~~  226 (415)
                      .   --...++.++.-+.++++.++..|+.-+..+..-.+. .-...-.|++..++.++.++....+...+.   ..+..
T Consensus       246 ~---d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~-~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~  321 (675)
T KOG0212|consen  246 M---DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGR-DLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLK  321 (675)
T ss_pred             c---CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCc-chhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHH
Confidence            1   1124688899999999999999998777777654442 123444566777777773333222332222   23444


Q ss_pred             hhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHH
Q 014945          227 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT  306 (415)
Q Consensus       227 l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~  306 (415)
                      ++.............++..+.+.+.++..+.+..++.-+..+-...+...- .....+.+.|+.-|++++..+...++..
T Consensus       322 l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~-~h~~~if~tLL~tLsd~sd~vvl~~L~l  400 (675)
T KOG0212|consen  322 LVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLL-VHNDSIFLTLLKTLSDRSDEVVLLALSL  400 (675)
T ss_pred             HHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhh-hhccHHHHHHHHhhcCchhHHHHHHHHH
Confidence            444332222244467889999999999999998888777777655554432 3445788999999999999999999999


Q ss_pred             HHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHhcc-CCHHH
Q 014945          307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLN-AEFEI  384 (415)
Q Consensus       307 l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~i~~L~~~l~~-~~~~v  384 (415)
                      ++++|...... . .  -.++..|+++.... ..-+...+..++..+|. -+++.+        +..+..+|.. ++.+.
T Consensus       401 la~i~~s~~~~-~-~--~~fl~sLL~~f~e~-~~~l~~Rg~lIIRqlC~lL~aE~I--------Yr~~a~ILe~e~nl~F  467 (675)
T KOG0212|consen  401 LASICSSSNSP-N-L--RKFLLSLLEMFKED-TKLLEVRGNLIIRQLCLLLNAERI--------YRSIADILEREENLKF  467 (675)
T ss_pred             HHHHhcCcccc-c-H--HHHHHHHHHHHhhh-hHHHHhhhhHHHHHHHHHhCHHHH--------HHHHHHHHhccccchH
Confidence            99999865532 0 0  12344455555555 66677888888888886 456654        3444455543 44566


Q ss_pred             HHHHHHHHHHHhCC
Q 014945          385 KKEAAWAISNATSG  398 (415)
Q Consensus       385 ~~~a~~aL~nl~~~  398 (415)
                      ......+|..+.-.
T Consensus       468 AstMV~~Ln~iLlT  481 (675)
T KOG0212|consen  468 ASTMVQALNTILLT  481 (675)
T ss_pred             HHHHHHHHHhhhcc
Confidence            66666676666544

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=4.8e-05  Score=75.54  Aligned_cols=303  Identities=12%  Similarity=0.178  Sum_probs=199.8

Q ss_pred             hhccHHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCc
Q 014945           69 KLESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS  147 (415)
Q Consensus        69 ~~~~i~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~  147 (415)
                      .++.++-+...+.+ .++.++..|+..+..+.+.  .+....+...|++..|+.+|.+.  |..+..++.+|..+++. +
T Consensus      1769 lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan--~~Cv~~~a~~~vL~~LL~lLHS~--PS~R~~vL~vLYAL~S~-~ 1843 (2235)
T KOG1789|consen 1769 LIGNFPLLITYLRCRKHPKLQILALQVILLATAN--KECVTDLATCNVLTTLLTLLHSQ--PSMRARVLDVLYALSSN-G 1843 (2235)
T ss_pred             hhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc--cHHHHHHHhhhHHHHHHHHHhcC--hHHHHHHHHHHHHHhcC-c
Confidence            34677778888874 7889999999998887553  57778899999999999999875  68999999999999985 6


Q ss_pred             hhhHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhcCCC---chhHHHHHh----------cCChHHHHHHhccc-h
Q 014945          148 ENTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDS---PKCRDLVLS----------NGALMPLLAQFNEH-A  212 (415)
Q Consensus       148 ~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~nl~~~~---~~~~~~~~~----------~g~i~~L~~~l~~~-~  212 (415)
                      +......+.|++..+..++. +.++..+.+++..++.+..+.   |..+-.++.          ...-+..+.++... .
T Consensus      1844 ~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~E 1923 (2235)
T KOG1789|consen 1844 QIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSE 1923 (2235)
T ss_pred             HHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCC
Confidence            66666677787777777554 567889999999999997543   222211111          00113334444211 1


Q ss_pred             hHhH------HHHHHHHHHHhh----hCC---CCC--------------------------------------chhhhhc
Q 014945          213 KLSM------LRNATWTLSNFC----RGK---PQP--------------------------------------LFEQTRP  241 (415)
Q Consensus       213 ~~~~------~~~a~~~l~~l~----~~~---~~~--------------------------------------~~~~~~~  241 (415)
                      ++++      +......+..+.    +..   +..                                      +..+..+
T Consensus      1924 nPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~ 2003 (2235)
T KOG1789|consen 1924 NPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTE 2003 (2235)
T ss_pred             CcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHH
Confidence            2221      222222222221    111   100                                      0112344


Q ss_pred             hHHHHHHhhcCCCh--hHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHH
Q 014945          242 ALPALERLIHSNDD--EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ  319 (415)
Q Consensus       242 ~l~~l~~lL~~~d~--~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~  319 (415)
                      ++..+.+++..+++  +...-...++..|....+...+.+-..|.+|.++..+...+..+-..|+++|..++...- ..+
T Consensus      2004 LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~-C~~ 2082 (2235)
T KOG1789|consen 2004 LLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQF-CCD 2082 (2235)
T ss_pred             HHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccH-HHH
Confidence            55555666654432  222233334444555555555556666999999999988888888999999999987543 566


Q ss_pred             HHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHhcc
Q 014945          320 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLN  379 (415)
Q Consensus       320 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~i~~L~~~l~~  379 (415)
                      .+.....+..+++.+...  +....-|+.+|-.+.. ...+-+.+.++.|++|.|+.+|+.
T Consensus      2083 AMA~l~~i~~~m~~mkK~--~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2083 AMAQLPCIDGIMKSMKKQ--PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDS 2141 (2235)
T ss_pred             HHhccccchhhHHHHHhc--chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhcc
Confidence            666666777788877654  4556688889988886 456667778889999999999975

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=98.45  E-value=7.1e-05  Score=71.01  Aligned_cols=256  Identities=16%  Similarity=0.132  Sum_probs=170.1

Q ss_pred             CchhHHHhcCchHHHHHhh---------cCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCC-----C
Q 014945          105 PPINEVIQSGVVPRFIEFL---------SRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP-----T  170 (415)
Q Consensus       105 ~~~~~~~~~g~i~~L~~ll---------~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-----~  170 (415)
                      ...+.+....++..|.++-         ....++.+..+|++||+|+...++..+..+.+.|..+.++..|+..     +
T Consensus        13 ~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~   92 (446)
T PF10165_consen   13 TGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQP   92 (446)
T ss_pred             ccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCC
Confidence            3444455555566666655         2233389999999999999999999999999999999999999875     6


Q ss_pred             HHHHHHHHHHHHHhcCCCchhHHHHHhc-CChHHHHHHhcc---------c-------hhHhHHHHHHHHHHHhhhCCCC
Q 014945          171 DDVREQAVWALGNVAGDSPKCRDLVLSN-GALMPLLAQFNE---------H-------AKLSMLRNATWTLSNFCRGKPQ  233 (415)
Q Consensus       171 ~~v~~~a~~~L~nl~~~~~~~~~~~~~~-g~i~~L~~~l~~---------~-------~~~~~~~~a~~~l~~l~~~~~~  233 (415)
                      .++.-...+.|--++...+..+..+.+. +++..++..|..         .       .+......++.++.|+....+.
T Consensus        93 ~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~  172 (446)
T PF10165_consen   93 SDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPK  172 (446)
T ss_pred             hhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCc
Confidence            7777788888888887777677666554 677777665521         0       2445677888888999877644


Q ss_pred             Cch----hhhhchHHHHHHhh---cC--CChhHHHHHHHHHHHhccCChHHH-----------HHHHHcCcHHHHHHhcC
Q 014945          234 PLF----EQTRPALPALERLI---HS--NDDEVLTDACWALSYLSDGTNDKI-----------QAVIEAGVCPRLVELLR  293 (415)
Q Consensus       234 ~~~----~~~~~~l~~l~~lL---~~--~d~~v~~~a~~~l~~l~~~~~~~~-----------~~~~~~~~i~~L~~lL~  293 (415)
                      ...    .....+++.+..++   ..  +.......++.+|.++--......           ........+..|+.+|.
T Consensus       173 ~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld  252 (446)
T PF10165_consen  173 SVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLD  252 (446)
T ss_pred             ccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHH
Confidence            332    22344455555552   11  124566777777777732111110           00111234666777763


Q ss_pred             C-----C---ChhhHHHHHHHHHHhhcCChHHHHHHHH----------------CCChHHHHHHhcCCCccchHHHHHHH
Q 014945          294 H-----P---SPSVLIPALRTVGNIVTGDDMQTQCIIN----------------HQALPCLLDLLTQNYKKSIKKEACWT  349 (415)
Q Consensus       294 ~-----~---~~~v~~~a~~~l~nl~~~~~~~~~~~~~----------------~~~l~~L~~ll~~~~~~~v~~~a~~~  349 (415)
                      .     .   -.....+.+.+|.+++......++.+..                ..+-..|++++.++ .+.+|..++..
T Consensus       253 ~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~-~~~~k~~vael  331 (446)
T PF10165_consen  253 KRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP-DPQLKDAVAEL  331 (446)
T ss_pred             HHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC-CchHHHHHHHH
Confidence            1     1   1357788999999999877655544432                24567899999999 69999999999


Q ss_pred             HHHHhcCCHHHH
Q 014945          350 ISNITAGNVNQI  361 (415)
Q Consensus       350 l~nl~~~~~~~~  361 (415)
                      +..+|..+....
T Consensus       332 lf~Lc~~d~~~~  343 (446)
T PF10165_consen  332 LFVLCKEDASRF  343 (446)
T ss_pred             HHHHHhhhHHHH
Confidence            999987655433

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.45  E-value=1.8e-05  Score=68.30  Aligned_cols=261  Identities=16%  Similarity=0.142  Sum_probs=166.7

Q ss_pred             HhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHh-CCChHHHHHhhCC--CCHHHHHHHHHHHHHhcCCCchhHHHHHh
Q 014945          121 EFLSRDDFPQLQFEAAWALTNIASGTSENTRVVID-HGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLS  197 (415)
Q Consensus       121 ~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~ll~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~  197 (415)
                      ++++.-+ +-.+..|+.|+.++... ++.+...-. ...-..+..++++  ...+++-..+.+++.++..+. +.+.+-+
T Consensus       156 kl~Q~i~-~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~-~aqdi~K  232 (432)
T COG5231         156 KLSQLID-FLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKE-CAQDIDK  232 (432)
T ss_pred             HHHHHHH-HHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHH-HHHHHHH
Confidence            3444444 66899999999999986 777765443 3445567777765  467889999999998876554 3322211


Q ss_pred             -cCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchh--hhhchHHHHHHhhc---CCChhHHHHHHHHHHHhccC
Q 014945          198 -NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE--QTRPALPALERLIH---SNDDEVLTDACWALSYLSDG  271 (415)
Q Consensus       198 -~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~--~~~~~l~~l~~lL~---~~d~~v~~~a~~~l~~l~~~  271 (415)
                       ...+.-++.+........+.+-++..+.|++...|.....  ...+-+...++.|.   ..|++++.+.-.+=..+...
T Consensus       233 ~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~  312 (432)
T COG5231         233 MDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQN  312 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh
Confidence             2246667777756668889999999999999854333221  22332333344442   35777777655544444432


Q ss_pred             ChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHC--CChHHHHHHhcCCCccc-hHHHHHH
Q 014945          272 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH--QALPCLLDLLTQNYKKS-IKKEACW  348 (415)
Q Consensus       272 ~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~--~~l~~L~~ll~~~~~~~-v~~~a~~  348 (415)
                      .....  ..+ ..+..|-.-+-+-+|..+..-.|.         ...+.+.+.  .++..|.++++.. .+. .-.-||.
T Consensus       313 ~k~l~--~fD-~Y~~ELdsg~l~wSp~H~~~dFWs---------~N~d~l~kdny~i~k~L~~~lq~n-~~nt~i~vAc~  379 (432)
T COG5231         313 TKKLC--IFD-NYLNELDSGRLEWSPYHHKKDFWS---------TNLDMLIKDNYEIVKVLKKYLQSN-NPNTWICVACS  379 (432)
T ss_pred             hhhhh--HHH-HHHHHHhhCcccCCCcccccCchh---------hhHHHHhhhhHHHHHHHHHHHhcC-CCCceEeeeHh
Confidence            22110  010 112222222222333333333321         122333322  5678899999988 555 6677888


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhC
Q 014945          349 TISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  397 (415)
Q Consensus       349 ~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~  397 (415)
                      -++.+....|+.+..+..-|+=..+++++.++|++|+-+|+.|+..+..
T Consensus       380 Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         380 DIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS  428 (432)
T ss_pred             hHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence            8999998899999999999999999999999999999999999987763

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.44  E-value=0.00023  Score=68.79  Aligned_cols=261  Identities=18%  Similarity=0.181  Sum_probs=161.9

Q ss_pred             HhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCC
Q 014945          121 EFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGA  200 (415)
Q Consensus       121 ~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~  200 (415)
                      ++..+.. +-+|..|+.++-.+=+-.++....+     +..+-.+|.+.++.|.-.|+.++-.+|-+.-   +.+  ++.
T Consensus       150 ~~~~D~s-~yVRk~AA~AIpKLYsLd~e~k~qL-----~e~I~~LLaD~splVvgsAv~AF~evCPerl---dLI--Hkn  218 (968)
T KOG1060|consen  150 KAVTDPS-PYVRKTAAHAIPKLYSLDPEQKDQL-----EEVIKKLLADRSPLVVGSAVMAFEEVCPERL---DLI--HKN  218 (968)
T ss_pred             HHhcCCc-HHHHHHHHHhhHHHhcCChhhHHHH-----HHHHHHHhcCCCCcchhHHHHHHHHhchhHH---HHh--hHH
Confidence            3444555 6777777777777766666665543     3445556777778888888888777764432   232  235


Q ss_pred             hHHHHHHhccchhHhHHHHHHHHHHHhhhCC-CCCc----------------------------hhhhhchHHHHHHhhc
Q 014945          201 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPL----------------------------FEQTRPALPALERLIH  251 (415)
Q Consensus       201 i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~----------------------------~~~~~~~l~~l~~lL~  251 (415)
                      ...+.++| .+-+.--+..++..|...++.. +.+.                            ..-..-++...-.+|+
T Consensus       219 yrklC~ll-~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~  297 (968)
T KOG1060|consen  219 YRKLCRLL-PDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQ  297 (968)
T ss_pred             HHHHHhhc-cchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHh
Confidence            66677776 4444444555555665556554 2220                            0111334556667788


Q ss_pred             CCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHH--------------
Q 014945          252 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ--------------  317 (415)
Q Consensus       252 ~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~--------------  317 (415)
                      +.++.|...++.++.+++...+.       .+++..|+.+|.+.. .++.-.+..++.++...+..              
T Consensus       298 S~n~sVVmA~aql~y~lAP~~~~-------~~i~kaLvrLLrs~~-~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssD  369 (968)
T KOG1060|consen  298 SRNPSVVMAVAQLFYHLAPKNQV-------TKIAKALVRLLRSNR-EVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSD  369 (968)
T ss_pred             cCCcHHHHHHHhHHHhhCCHHHH-------HHHHHHHHHHHhcCC-cchhhhHHHHHHHHhcchhhhhhhhhceEeecCC
Confidence            89999999999999999854421       234677777775433 34555555555555332211              


Q ss_pred             ---HH--------HHHHC----CChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCH
Q 014945          318 ---TQ--------CIINH----QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEF  382 (415)
Q Consensus       318 ---~~--------~~~~~----~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~  382 (415)
                         +.        .+.+.    .+++-+...+.+. +..+...+..+|+.++........     ..+.-|+.++.+.+.
T Consensus       370 p~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~-d~~faa~aV~AiGrCA~~~~sv~~-----tCL~gLv~Llsshde  443 (968)
T KOG1060|consen  370 PTQVKILKLEILSNLANESNISEILRELQTYIKSS-DRSFAAAAVKAIGRCASRIGSVTD-----TCLNGLVQLLSSHDE  443 (968)
T ss_pred             HHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHhhCchhh-----HHHHHHHHHHhcccc
Confidence               10        00111    2344455566666 557888888888888864222222     257788999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHH
Q 014945          383 EIKKEAAWAISNATSGGSNEQIKYK  407 (415)
Q Consensus       383 ~v~~~a~~aL~nl~~~~~~~~~~~l  407 (415)
                      .|..+|...+..+....+.++.+++
T Consensus       444 ~Vv~eaV~vIk~Llq~~p~~h~~ii  468 (968)
T KOG1060|consen  444 LVVAEAVVVIKRLLQKDPAEHLEIL  468 (968)
T ss_pred             hhHHHHHHHHHHHHhhChHHHHHHH
Confidence            9999999999999998888875555

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=9e-05  Score=64.45  Aligned_cols=319  Identities=14%  Similarity=0.125  Sum_probs=203.2

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHH--HHhhcCCCChHHHHHHHHHHHHHhCCCch
Q 014945           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF--IEFLSRDDFPQLQFEAAWALTNIASGTSE  148 (415)
Q Consensus        71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L--~~ll~~~~~~~i~~~a~~~L~~l~~~~~~  148 (415)
                      +.++.++..+..+|.++-..|...+..+...  ......+.++.....+  ..+--..+ .-.|...+..+..+.+-+++
T Consensus       128 eilklildcIggeddeVAkAAiesikrialf--paaleaiFeSellDdlhlrnlaakcn-diaRvRVleLIieifSiSpe  204 (524)
T KOG4413|consen  128 EILKLILDCIGGEDDEVAKAAIESIKRIALF--PAALEAIFESELLDDLHLRNLAAKCN-DIARVRVLELIIEIFSISPE  204 (524)
T ss_pred             hHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--HHHHHHhcccccCChHHHhHHHhhhh-hHHHHHHHHHHHHHHhcCHH
Confidence            4567788888888888888888888888543  2334555565554433  33333334 56788888999999999999


Q ss_pred             hhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccc-hhHhHHHHHHHHHHH
Q 014945          149 NTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH-AKLSMLRNATWTLSN  226 (415)
Q Consensus       149 ~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~-~~~~~~~~a~~~l~~  226 (415)
                      .....-++|.+..|..-+.. .+.-++..++.....++...- .++.+.+.|.++.+.+++... +++--.-.++.....
T Consensus       205 saneckkSGLldlLeaElkGteDtLVianciElvteLaeteH-greflaQeglIdlicnIIsGadsdPfekfralmgfgk  283 (524)
T KOG4413|consen  205 SANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEH-GREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGK  283 (524)
T ss_pred             HHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhh-hhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHH
Confidence            99999999999999888876 677888899999999986544 467888889999999988422 233222223333333


Q ss_pred             hhhCCC--CCch----hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCc--HHHHHHhcCCCC-h
Q 014945          227 FCRGKP--QPLF----EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV--CPRLVELLRHPS-P  297 (415)
Q Consensus       227 l~~~~~--~~~~----~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~--i~~L~~lL~~~~-~  297 (415)
                      +.....  ....    ....-++....+++..+|++.+..|+.+++.+...... .+.+.+.|-  ...++.-..+.+ .
T Consensus       284 ffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteG-adlllkTgppaaehllarafdqnah  362 (524)
T KOG4413|consen  284 FFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEG-ADLLLKTGPPAAEHLLARAFDQNAH  362 (524)
T ss_pred             HhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcch-hHHHhccCChHHHHHHHHHhccccc
Confidence            332210  1011    11233455566778889999999999999998765544 355666653  333333333333 3


Q ss_pred             hhHHHHHHHHHHhhcCC---hH----------HHHHHHHC-------CChHHHHHHhcCCCccchHHHHHHHHHHHhcCC
Q 014945          298 SVLIPALRTVGNIVTGD---DM----------QTQCIINH-------QALPCLLDLLTQNYKKSIKKEACWTISNITAGN  357 (415)
Q Consensus       298 ~v~~~a~~~l~nl~~~~---~~----------~~~~~~~~-------~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~  357 (415)
                      .-+..++++|.+++...   ++          .+..+++.       .-+..+..+++.+ .++++..+..++..++...
T Consensus       363 akqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQp-fpEihcAalktfTAiaaqP  441 (524)
T KOG4413|consen  363 AKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQP-FPEIHCAALKTFTAIAAQP  441 (524)
T ss_pred             chHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCC-ChhhHHHHHHHHHHHHcCc
Confidence            44667888888887532   11          11112221       2345667778888 8999999999999998753


Q ss_pred             HHHHHHHHHcCCHHHHHHHhccC---CHHHHHHHHHHHHHH
Q 014945          358 VNQIQAIIEAGIIGPLVNLLLNA---EFEIKKEAAWAISNA  395 (415)
Q Consensus       358 ~~~~~~l~~~~~i~~L~~~l~~~---~~~v~~~a~~aL~nl  395 (415)
                      -.....+-..|++..+.+.-...   .-+.+.++|.|+.+-
T Consensus       442 WalkeifakeefieiVtDastEhaKaakdAkYeccKAiaea  482 (524)
T KOG4413|consen  442 WALKEIFAKEEFIEIVTDASTEHAKAAKDAKYECCKAIAEA  482 (524)
T ss_pred             HHHHHHhcCccceeeecccchhhHHHHHHHHHHHHHHHHHH
Confidence            33222333566666665543221   123455566666553

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.42  E-value=0.00026  Score=67.65  Aligned_cols=313  Identities=17%  Similarity=0.175  Sum_probs=193.7

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHH
Q 014945           73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV  152 (415)
Q Consensus        73 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~  152 (415)
                      --+-+++|.++-...++-+-..+.-++..+ .+..+.     ++..+.+=|.+.+ +.....|+.+++|+.+  .+..+.
T Consensus        76 hmEaV~LLss~kysEKqIGYl~is~L~n~n-~dl~kl-----vin~iknDL~srn-~~fv~LAL~~I~niG~--re~~ea  146 (938)
T KOG1077|consen   76 HMEAVNLLSSNKYSEKQIGYLFISLLLNEN-SDLMKL-----VINSIKNDLSSRN-PTFVCLALHCIANIGS--REMAEA  146 (938)
T ss_pred             hHHHHHHhhcCCccHHHHhHHHHHHHHhcc-hHHHHH-----HHHHHHhhhhcCC-cHHHHHHHHHHHhhcc--HhHHHH
Confidence            345667777766555555544444444222 222222     2455556666777 8889999999999887  555555


Q ss_pred             HHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhC
Q 014945          153 VIDHGAVPIFVRLLSSP--TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  230 (415)
Q Consensus       153 ~~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~  230 (415)
                      +..  -|+   ++|.++  .+-++..|+-||..|...+|+   .+-..+....++.+| ++.+..+...+...+.-|+..
T Consensus       147 ~~~--DI~---KlLvS~~~~~~vkqkaALclL~L~r~spD---l~~~~~W~~riv~LL-~D~~~gv~ta~~sLi~~lvk~  217 (938)
T KOG1077|consen  147 FAD--DIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPD---LVNPGEWAQRIVHLL-DDQHMGVVTAATSLIEALVKK  217 (938)
T ss_pred             hhh--hhH---HHHhCCcchHHHHHHHHHHHHHHHhcCcc---ccChhhHHHHHHHHh-CccccceeeehHHHHHHHHHc
Confidence            443  244   555553  456888898899888877764   333334678899999 666677777888888888876


Q ss_pred             CCCCchhhhhchHHHHHHhhc-------------CCChhHHHHHHHHHHHhccCCh-HHHHHHHHcCcHHHHHHhcCCC-
Q 014945          231 KPQPLFEQTRPALPALERLIH-------------SNDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLRHP-  295 (415)
Q Consensus       231 ~~~~~~~~~~~~l~~l~~lL~-------------~~d~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~i~~L~~lL~~~-  295 (415)
                      .+..........+..|.....             -+.|.+...++++|.++-.-.+ .....+  ..+++.++...+.+ 
T Consensus       218 ~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l--~evl~~iLnk~~~~~  295 (938)
T KOG1077|consen  218 NPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARL--NEVLERILNKAQEPP  295 (938)
T ss_pred             CCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHH--HHHHHHHHhccccCc
Confidence            654433333333333333221             1347788889999988843222 111112  13455555555421 


Q ss_pred             ---C---hhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 014945          296 ---S---PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGI  369 (415)
Q Consensus       296 ---~---~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~  369 (415)
                         +   .......+.-.-+++..-|..-+.+.  ..+..|-.++.+. +..+|--|.-.++.++... ..++.+...  
T Consensus       296 ~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~r-E~NiRYLaLEsm~~L~ss~-~s~davK~h--  369 (938)
T KOG1077|consen  296 KSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFLSHR-ETNIRYLALESMCKLASSE-FSIDAVKKH--  369 (938)
T ss_pred             cccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhcc-cccchhhhHHHHHHHHhcc-chHHHHHHH--
Confidence               1   12333444444455544443333222  3577889999998 9999999999999988742 223333333  


Q ss_pred             HHHHHHHhc-cCCHHHHHHHHHHHHHHhCCCCHHHH-HHHHHHh
Q 014945          370 IGPLVNLLL-NAEFEIKKEAAWAISNATSGGSNEQI-KYKFFYV  411 (415)
Q Consensus       370 i~~L~~~l~-~~~~~v~~~a~~aL~nl~~~~~~~~~-~~l~~~~  411 (415)
                      .+.++..|+ ..|..+|+.|+..|.-++...+..+| ..|+.|+
T Consensus       370 ~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~IV~elLqYL  413 (938)
T KOG1077|consen  370 QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQIVAELLQYL  413 (938)
T ss_pred             HHHHHHHhccccchHHHHHHHHHHHHHhchhhHHHHHHHHHHHH
Confidence            677788888 68899999999999999988776555 5554443

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.42  E-value=4.7e-07  Score=54.60  Aligned_cols=40  Identities=45%  Similarity=0.908  Sum_probs=37.8

Q ss_pred             CchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 014945          146 TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA  185 (415)
Q Consensus       146 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~  185 (415)
                      +++++..+++.|++|.|+++|.++++.+++.|+|+|+||+
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            3678899999999999999999999999999999999997

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=98.41  E-value=5.5e-07  Score=58.43  Aligned_cols=55  Identities=22%  Similarity=0.557  Sum_probs=48.6

Q ss_pred             cchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHH
Q 014945          340 KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA  395 (415)
Q Consensus       340 ~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl  395 (415)
                      +.+|..|+|+|++++...++........ +++.|+.+|.+++++||..|+|+|+++
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~-~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPE-LLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHH-HHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHH-HHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            4689999999999988888877775554 999999999999999999999999975

...

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.39  E-value=7.5e-06  Score=61.47  Aligned_cols=126  Identities=19%  Similarity=0.192  Sum_probs=106.3

Q ss_pred             hhccHHHHHHhhc-CCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCc
Q 014945           69 KLESLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS  147 (415)
Q Consensus        69 ~~~~i~~l~~~l~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~  147 (415)
                      .++-+..|+...+ ..+.+.+...+.-|.+++-.  +-+...+.+.+++..++..|..++ ..+...++..|+|+|.+ +
T Consensus        14 Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD--P~Nys~Lrql~vLdlFvdsl~e~n-e~LvefgIgglCNlC~d-~   89 (173)
T KOG4646|consen   14 RLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYD--PINYSHLRQLDVLDLFVDSLEEQN-ELLVEFGIGGLCNLCLD-K   89 (173)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccC--cchHHHHHHhhHHHHHHHHhhccc-HHHHHHhHHHHHhhccC-h
Confidence            3456788888777 47788888888888888632  344456778999999999999999 89999999999999996 8


Q ss_pred             hhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhc
Q 014945          148 ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN  198 (415)
Q Consensus       148 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~  198 (415)
                      .+...+.+++++|.++..++++...+...++.++..++......|+.+...
T Consensus        90 ~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p  140 (173)
T KOG4646|consen   90 TNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSP  140 (173)
T ss_pred             HHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccH
Confidence            888999999999999999999999999999999999998777777777653

>TIGR02270 conserved hypothetical protein

Probab=98.38  E-value=0.00011  Score=68.58  Aligned_cols=209  Identities=19%  Similarity=0.091  Sum_probs=153.1

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHH
Q 014945           73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV  152 (415)
Q Consensus        73 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~  152 (415)
                      +..++..|.+.++.++..++..|..+-.            ....+.|+.+|++.+ +.++..++.+++....        
T Consensus        88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~------------~~a~~~L~~~L~~~~-p~vR~aal~al~~r~~--------  146 (410)
T TIGR02270        88 LRSVLAVLQAGPEGLCAGIQAALGWLGG------------RQAEPWLEPLLAASE-PPGRAIGLAALGAHRH--------  146 (410)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHhcCCc------------hHHHHHHHHHhcCCC-hHHHHHHHHHHHhhcc--------
Confidence            7889999999889899999888876521            235688999999888 8999888877766222        


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCC
Q 014945          153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP  232 (415)
Q Consensus       153 ~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~  232 (415)
                          ...+.+..+|+++++.++..|+.+|+.+-...           .++.|...+ .+.++.++..+++++..+-.   
T Consensus       147 ----~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~-----------a~~~L~~al-~d~~~~VR~aA~~al~~lG~---  207 (410)
T TIGR02270       147 ----DPGPALEAALTHEDALVRAAALRALGELPRRL-----------SESTLRLYL-RDSDPEVRFAALEAGLLAGS---  207 (410)
T ss_pred             ----ChHHHHHHHhcCCCHHHHHHHHHHHHhhcccc-----------chHHHHHHH-cCCCHHHHHHHHHHHHHcCC---
Confidence                23568889999999999999999999885322           445566666 88999999999999976642   


Q ss_pred             CCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 014945          233 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT  312 (415)
Q Consensus       233 ~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~  312 (415)
                             ....+.+..+...........+..++...  +.+         .+++.|..++.++.  ++..++.++|.+-.
T Consensus       208 -------~~A~~~l~~~~~~~g~~~~~~l~~~lal~--~~~---------~a~~~L~~ll~d~~--vr~~a~~AlG~lg~  267 (410)
T TIGR02270       208 -------RLAWGVCRRFQVLEGGPHRQRLLVLLAVA--GGP---------DAQAWLRELLQAAA--TRREALRAVGLVGD  267 (410)
T ss_pred             -------HhHHHHHHHHHhccCccHHHHHHHHHHhC--Cch---------hHHHHHHHHhcChh--hHHHHHHHHHHcCC
Confidence                   13344555544444444443433333333  111         35688888887655  89999999997754


Q ss_pred             CChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc
Q 014945          313 GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA  355 (415)
Q Consensus       313 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~  355 (415)
                      .           ..++.|+..+.+.   .++..|..++..|+.
T Consensus       268 p-----------~av~~L~~~l~d~---~~aR~A~eA~~~ItG  296 (410)
T TIGR02270       268 V-----------EAAPWCLEAMREP---PWARLAGEAFSLITG  296 (410)
T ss_pred             c-----------chHHHHHHHhcCc---HHHHHHHHHHHHhhC
Confidence            2           4578899998766   499999999999986

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.36  E-value=7.3e-05  Score=68.87  Aligned_cols=215  Identities=25%  Similarity=0.341  Sum_probs=159.5

Q ss_pred             CchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHH
Q 014945          114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD  193 (415)
Q Consensus       114 g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~  193 (415)
                      ..++.+.+++.+.+ ..++..+++.++.+...           -+++.+..++.+.++.++..|+.+|+.+-  .+.   
T Consensus        43 ~~~~~~~~~l~~~~-~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~~~~vr~~a~~aLg~~~--~~~---  105 (335)
T COG1413          43 EAADELLKLLEDED-LLVRLSAAVALGELGSE-----------EAVPLLRELLSDEDPRVRDAAADALGELG--DPE---  105 (335)
T ss_pred             hhHHHHHHHHcCCC-HHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCCCHHHHHHHHHHHHccC--Chh---
Confidence            35788999999987 89999999997776542           35899999999999999999999998873  221   


Q ss_pred             HHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCCh------------hHHHHH
Q 014945          194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDD------------EVLTDA  261 (415)
Q Consensus       194 ~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~------------~v~~~a  261 (415)
                            .++.++..+..+.+..++..+.++|..+-..          ..+..++..+.+...            .++..+
T Consensus       106 ------a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a  169 (335)
T COG1413         106 ------AVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAA  169 (335)
T ss_pred             ------HHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence                  5788899995578999999999999988654          225556666665442            244444


Q ss_pred             HHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccc
Q 014945          262 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS  341 (415)
Q Consensus       262 ~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~  341 (415)
                      ...++.+-           +...++.+...+.+.+..++..+..+++.+....         ..+.+.+...+.+. +..
T Consensus       170 ~~~l~~~~-----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~-~~~  228 (335)
T COG1413         170 AEALGELG-----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDE-SLE  228 (335)
T ss_pred             HHHHHHcC-----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCC-CHH
Confidence            44444432           1234678888898888899999999999998765         24567888899888 999


Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHH
Q 014945          342 IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAIS  393 (415)
Q Consensus       342 v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~  393 (415)
                      +|..++.+++.+-..  .         ..+.+...+.+.+..++..+..++.
T Consensus       229 vr~~~~~~l~~~~~~--~---------~~~~l~~~l~~~~~~~~~~~~~~~~  269 (335)
T COG1413         229 VRKAALLALGEIGDE--E---------AVDALAKALEDEDVILALLAAAALG  269 (335)
T ss_pred             HHHHHHHHhcccCcc--h---------hHHHHHHHHhccchHHHHHHHHHhc
Confidence            999999999988653  2         2445566666666666555544443

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.30  E-value=0.00017  Score=69.69  Aligned_cols=251  Identities=12%  Similarity=0.139  Sum_probs=166.9

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHH
Q 014945           74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV  153 (415)
Q Consensus        74 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~  153 (415)
                      ..|..+|+++....+..|..-+..+.... ..      -+..+|..++...+.+ .+++...---|...|...++-.  +
T Consensus        38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G-~d------vS~~Fp~VVKNVaskn-~EVKkLVyvYLlrYAEeqpdLA--L  107 (968)
T KOG1060|consen   38 DDLKQLLDSNKDSLKLEAMKRIIALIAKG-KD------VSLLFPAVVKNVASKN-IEVKKLVYVYLLRYAEEQPDLA--L  107 (968)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHhcC-Cc------HHHHHHHHHHHhhccC-HHHHHHHHHHHHHHhhcCCCce--e
Confidence            57889999999999999998766665433 12      2235799999999998 9999999888888888655432  2


Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCC
Q 014945          154 IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ  233 (415)
Q Consensus       154 ~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~  233 (415)
                      .   -|..+-+-|.++|+.+|..|+++|..|=.       .++.-=.+-.+-+.. .+..+-++..|+.++-.|-.-.+.
T Consensus       108 L---SIntfQk~L~DpN~LiRasALRvlSsIRv-------p~IaPI~llAIk~~~-~D~s~yVRk~AA~AIpKLYsLd~e  176 (968)
T KOG1060|consen  108 L---SINTFQKALKDPNQLIRASALRVLSSIRV-------PMIAPIMLLAIKKAV-TDPSPYVRKTAAHAIPKLYSLDPE  176 (968)
T ss_pred             e---eHHHHHhhhcCCcHHHHHHHHHHHHhcch-------hhHHHHHHHHHHHHh-cCCcHHHHHHHHHhhHHHhcCChh
Confidence            2   37788889999999999999999987621       111100111222222 567888999999999999876543


Q ss_pred             CchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcC
Q 014945          234 PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG  313 (415)
Q Consensus       234 ~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~  313 (415)
                      ..    ..++..+-.+|.+.++.|.-.|+.++-.+|...-+.+.     +-..++..+|.+-+..=+...+..|...|..
T Consensus       177 ~k----~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIH-----knyrklC~ll~dvdeWgQvvlI~mL~RYAR~  247 (968)
T KOG1060|consen  177 QK----DQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIH-----KNYRKLCRLLPDVDEWGQVVLINMLTRYARH  247 (968)
T ss_pred             hH----HHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhh-----HHHHHHHhhccchhhhhHHHHHHHHHHHHHh
Confidence            32    25667777888899999999999999888854433322     3357777777665554555566666655532


Q ss_pred             C---hHHHHH----------------------HHHC---CChHHHHHHhcCCCccchHHHHHHHHHHHhc
Q 014945          314 D---DMQTQC----------------------IINH---QALPCLLDLLTQNYKKSIKKEACWTISNITA  355 (415)
Q Consensus       314 ~---~~~~~~----------------------~~~~---~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~  355 (415)
                      .   +.....                      ..+.   -++...-.++.+. ++.|...+|.+...++-
T Consensus       248 ~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~-n~sVVmA~aql~y~lAP  316 (968)
T KOG1060|consen  248 QLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSR-NPSVVMAVAQLFYHLAP  316 (968)
T ss_pred             cCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcC-CcHHHHHHHhHHHhhCC
Confidence            1   000000                      0000   0233444566676 77888888877777764

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.29  E-value=4.2e-05  Score=72.33  Aligned_cols=219  Identities=15%  Similarity=0.150  Sum_probs=149.6

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHH---HHHHHHhhhCC---C
Q 014945          159 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNA---TWTLSNFCRGK---P  232 (415)
Q Consensus       159 i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a---~~~l~~l~~~~---~  232 (415)
                      ...++.+..+.+..++.+|+.+|..|..... ....     .....+.++ .+.+..++..|   +|.++|.+-.+   .
T Consensus       200 ~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~k-L~~~-----~Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~e  272 (823)
T KOG2259|consen  200 ARGLIYLEHDQDFRVRTHAVEGLLALSEGFK-LSKA-----CYSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLERE  272 (823)
T ss_pred             HHHHHHHhcCCCcchHHHHHHHHHhhccccc-ccHH-----HHHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccch
Confidence            3347777777888888888888877766322 2222     344567777 77788888777   56666666322   1


Q ss_pred             CCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHH--------------------------
Q 014945          233 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCP--------------------------  286 (415)
Q Consensus       233 ~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~--------------------------  286 (415)
                      .........++..+...+.+-...|+..|..+++.+...+++.++..++..++.                          
T Consensus       273 ~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~  352 (823)
T KOG2259|consen  273 SEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKE  352 (823)
T ss_pred             hhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcc
Confidence            222333456677788888888888899999988888776666665555544444                          


Q ss_pred             ------------------------HHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccch
Q 014945          287 ------------------------RLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSI  342 (415)
Q Consensus       287 ------------------------~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v  342 (415)
                                              .++.-|.++-.+|+.+|...++.++...+....     ..++.|+.++++. ...|
T Consensus       353 ~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE-~~~V  426 (823)
T KOG2259|consen  353 WNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDE-IEVV  426 (823)
T ss_pred             ccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccH-HHHH
Confidence                                    233333333345999999999999998775544     4577899999998 9999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHh
Q 014945          343 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT  396 (415)
Q Consensus       343 ~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~  396 (415)
                      |..|.++|..|+.+      -.++...++.++..|.+.++++|.++-..|++.-
T Consensus       427 RL~ai~aL~~Is~~------l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~  474 (823)
T KOG2259|consen  427 RLKAIFALTMISVH------LAIREEQLRQILESLEDRSVDVREALRELLKNAR  474 (823)
T ss_pred             HHHHHHHHHHHHHH------heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            99999999988864      1122234667777788888888877776666543

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.29  E-value=8.7e-06  Score=61.14  Aligned_cols=116  Identities=13%  Similarity=0.084  Sum_probs=100.7

Q ss_pred             cCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhH
Q 014945          113 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR  192 (415)
Q Consensus       113 ~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~  192 (415)
                      .+.+..|+.-.....+.+.+.+..--|.|.+.+ |.+...+.+..+++.++.-|..++..+.+.++..|+|+|-+.. ..
T Consensus        15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~-n~   92 (173)
T KOG4646|consen   15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKT-NA   92 (173)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChH-HH
Confidence            345677776666555489999999999999996 8888999999999999999999999999999999999998877 56


Q ss_pred             HHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC
Q 014945          193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK  231 (415)
Q Consensus       193 ~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~  231 (415)
                      ..+.+.++++.++..+ .++...+...++.++..++.+.
T Consensus        93 ~~I~ea~g~plii~~l-ssp~e~tv~sa~~~l~~l~~~~  130 (173)
T KOG4646|consen   93 KFIREALGLPLIIFVL-SSPPEITVHSAALFLQLLEFGE  130 (173)
T ss_pred             HHHHHhcCCceEEeec-CCChHHHHHHHHHHHHHhcCcc
Confidence            8899999999999999 7778888899999999998765

>PF05536 Neurochondrin: Neurochondrin

Probab=98.29  E-value=7.6e-05  Score=72.39  Aligned_cols=235  Identities=19%  Similarity=0.166  Sum_probs=160.5

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCc--hhHHHhcCchHHHHHhhcCCC------ChHHHHHHHHHHHHHh
Q 014945           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPP--INEVIQSGVVPRFIEFLSRDD------FPQLQFEAAWALTNIA  143 (415)
Q Consensus        72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~--~~~~~~~g~i~~L~~ll~~~~------~~~i~~~a~~~L~~l~  143 (415)
                      .+...+++|++.+.+.++.++..+.+++...+...  .+.+.+.-+.+.+-++|.+..      ....+..|+.+|..++
T Consensus         6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~   85 (543)
T PF05536_consen    6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC   85 (543)
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence            57888999999888888889999999987542212  234667767888889998732      1567788888999888


Q ss_pred             CCCchhh--HHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHH
Q 014945          144 SGTSENT--RVVIDHGAVPIFVRLLSSPTD-DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNA  220 (415)
Q Consensus       144 ~~~~~~~--~~~~~~g~i~~L~~ll~~~~~-~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a  220 (415)
                      .. ++..  ..++  +-||.|+..+.+.+. .+...|+.+|..++ ..+..+..+++.|.++.|...+.+  .+.....+
T Consensus        86 ~~-~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~A  159 (543)
T PF05536_consen   86 RD-PELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN--QSFQMEIA  159 (543)
T ss_pred             CC-hhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh--CcchHHHH
Confidence            84 4443  2233  569999999987666 99999999999999 555578999999999999999844  55567778


Q ss_pred             HHHHHHhhhCCCCC----chhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHH-HHHHHH----cCcHHHHHHh
Q 014945          221 TWTLSNFCRGKPQP----LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK-IQAVIE----AGVCPRLVEL  291 (415)
Q Consensus       221 ~~~l~~l~~~~~~~----~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~-~~~~~~----~~~i~~L~~l  291 (415)
                      +.++.+++......    .......+++.+...+..........+|..+..+....+.. ......    ..+...+..+
T Consensus       160 l~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~i  239 (543)
T PF05536_consen  160 LNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDI  239 (543)
T ss_pred             HHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHH
Confidence            88888877654321    12223455666666666666666777888888876554211 011111    1233445555


Q ss_pred             cCCC-ChhhHHHHHHHHHHhhc
Q 014945          292 LRHP-SPSVLIPALRTVGNIVT  312 (415)
Q Consensus       292 L~~~-~~~v~~~a~~~l~nl~~  312 (415)
                      |.+. .+.-|.+++...+.+..
T Consensus       240 L~sr~~~~~R~~al~Laa~Ll~  261 (543)
T PF05536_consen  240 LQSRLTPSQRDPALNLAASLLD  261 (543)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHH
Confidence            5443 45666677776666653

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.25  E-value=0.0008  Score=64.47  Aligned_cols=301  Identities=12%  Similarity=0.100  Sum_probs=182.1

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCC-hHHHHHHHHHHHHHhCCCchhhH
Q 014945           73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDF-PQLQFEAAWALTNIASGTSENTR  151 (415)
Q Consensus        73 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~-~~i~~~a~~~L~~l~~~~~~~~~  151 (415)
                      +..+.+-|.|.|+.....|+.++.++-+.   +..+.+. .+ ++   ++|-++++ +-++..|+-||..+-..+|+.. 
T Consensus       113 in~iknDL~srn~~fv~LAL~~I~niG~r---e~~ea~~-~D-I~---KlLvS~~~~~~vkqkaALclL~L~r~spDl~-  183 (938)
T KOG1077|consen  113 INSIKNDLSSRNPTFVCLALHCIANIGSR---EMAEAFA-DD-IP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDLV-  183 (938)
T ss_pred             HHHHHhhhhcCCcHHHHHHHHHHHhhccH---hHHHHhh-hh-hH---HHHhCCcchHHHHHHHHHHHHHHHhcCcccc-
Confidence            45556666788888888888888887542   2222222 11 33   55555442 5678889999999988766532 


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhcc------------chhHhHHHH
Q 014945          152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE------------HAKLSMLRN  219 (415)
Q Consensus       152 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~------------~~~~~~~~~  219 (415)
                        -..+-+..++.+|.+.+-.+...+...+.-|+...|+.....+- -.+..|.++...            -+.+-++..
T Consensus       184 --~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~-~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vK  260 (938)
T KOG1077|consen  184 --NPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP-LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVK  260 (938)
T ss_pred             --ChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH-HHHHHHHHHHhhcccchhhceeecCCChHHHHH
Confidence              22356889999999988888888888888888766543222111 022223222210            123455666


Q ss_pred             HHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCC----C---hhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhc
Q 014945          220 ATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN----D---DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL  292 (415)
Q Consensus       220 a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~----d---~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL  292 (415)
                      ++.+|.++-.............++..++...+.+    +   .......+.-.-+++.+-+..-+.+.  ..+..|-++|
T Consensus       261 l~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fl  338 (938)
T KOG1077|consen  261 LLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFL  338 (938)
T ss_pred             HHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHh
Confidence            6666665521111112222234444444433321    1   11222233322333322222212232  4578999999


Q ss_pred             CCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHH
Q 014945          293 RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGP  372 (415)
Q Consensus       293 ~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~  372 (415)
                      .+.+..+|-.|+..+..++.... ..+.+-.+  .+.++..|+...|..+|+.|+-.|-.+|..  ++.+.     ++..
T Consensus       339 s~rE~NiRYLaLEsm~~L~ss~~-s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~--~Nak~-----IV~e  408 (938)
T KOG1077|consen  339 SHRETNIRYLALESMCKLASSEF-SIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDV--SNAKQ-----IVAE  408 (938)
T ss_pred             hcccccchhhhHHHHHHHHhccc-hHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhch--hhHHH-----HHHH
Confidence            99999999999999999998754 33434443  788899998555999999999999999962  22223     4667


Q ss_pred             HHHHhccCCHHHHHHHHHHHHHHhC
Q 014945          373 LVNLLLNAEFEIKKEAAWAISNATS  397 (415)
Q Consensus       373 L~~~l~~~~~~v~~~a~~aL~nl~~  397 (415)
                      |++.|...|+.+|++..--+.-+++
T Consensus       409 lLqYL~tAd~sireeivlKvAILaE  433 (938)
T KOG1077|consen  409 LLQYLETADYSIREEIVLKVAILAE  433 (938)
T ss_pred             HHHHHhhcchHHHHHHHHHHHHHHH
Confidence            7888888888888776655555543

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.24  E-value=1.9e-05  Score=68.44  Aligned_cols=187  Identities=16%  Similarity=0.129  Sum_probs=118.3

Q ss_pred             cCCCHHHHHHHHHHHHHHhccC-CCCchhHHHh--cCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCC
Q 014945           81 WSDDRNIQLDATTQFRKLLSIE-RSPPINEVIQ--SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHG  157 (415)
Q Consensus        81 ~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~--~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g  157 (415)
                      .+.|...+..|+..|+.++.+. .......+.+  ..+++.+...+.+.. ..+...|+.++..++..-........+ .
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~~l~~~~~~~~~-~   94 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLARQLGSHFEPYAD-I   94 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHH-H
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHhHHHHHH-H
Confidence            4688999999999999998764 1122223221  145567777777766 788999999999988754444444433 5


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCC--CCc
Q 014945          158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP--QPL  235 (415)
Q Consensus       158 ~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~--~~~  235 (415)
                      ++|.|+..+.++...+++.|..+|..++...+.....     ....+...+ .+.++.++..++..+..+....+  ...
T Consensus        95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-----~~~~l~~~~-~~Kn~~vR~~~~~~l~~~l~~~~~~~~~  168 (228)
T PF12348_consen   95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-----LLEILSQGL-KSKNPQVREECAEWLAIILEKWGSDSSV  168 (228)
T ss_dssp             HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-----HHHHHHHHT-T-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-----HHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence            7899999999999999999999999998776511111     123344444 78899999999998888887654  111


Q ss_pred             h---hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHH
Q 014945          236 F---EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK  275 (415)
Q Consensus       236 ~---~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~  275 (415)
                      .   .....+.+.+..++.+.+++||..|-.++..+....++.
T Consensus       169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~  211 (228)
T PF12348_consen  169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER  211 (228)
T ss_dssp             G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred             hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence            1   123568889999999999999999999888886544433

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.22  E-value=2.6e-05  Score=71.99  Aligned_cols=201  Identities=13%  Similarity=0.142  Sum_probs=142.3

Q ss_pred             HHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCC-CchhhhhchHHHHHHhhcCC
Q 014945          175 EQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIHSN  253 (415)
Q Consensus       175 ~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~~l~~l~~lL~~~  253 (415)
                      ..++.+|..++..-...|.-+....+.+.|+++| ++++.-+.-.++..++|+.-.... .......+++..++.++.+.
T Consensus       407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~L-s~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK  485 (743)
T COG5369         407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDAL-SNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK  485 (743)
T ss_pred             HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHh-cCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc
Confidence            3445556666666666777788888899999999 666666666677777777655433 33344478899999999999


Q ss_pred             ChhHHHHHHHHHHHhccCChHHHH-HHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChH---HHHHHHHC----C
Q 014945          254 DDEVLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM---QTQCIINH----Q  325 (415)
Q Consensus       254 d~~v~~~a~~~l~~l~~~~~~~~~-~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~---~~~~~~~~----~  325 (415)
                      |..++.+..|.+.++..+.++..+ .++..-.+..++++.+++.+.++..++..+.|+......   ..+.++..    -
T Consensus       486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y  565 (743)
T COG5369         486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY  565 (743)
T ss_pred             hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence            999999999999999877654322 245556679999999999999999999999999874332   12211111    2


Q ss_pred             ChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHHh
Q 014945          326 ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLVNLL  377 (415)
Q Consensus       326 ~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~-~~~i~~L~~~l  377 (415)
                      +.+.+.+.+... +|-.-.+.|+.|.++++.+.+-.+.+++ ..++..+..+|
T Consensus       566 lfk~l~~k~e~~-np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil  617 (743)
T COG5369         566 LFKRLIDKYEEN-NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEIL  617 (743)
T ss_pred             HHHHHHHHHHhc-CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHH
Confidence            456777777777 7877788899999999865554444443 33444444444

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.21  E-value=5.6e-05  Score=76.11  Aligned_cols=267  Identities=15%  Similarity=0.149  Sum_probs=170.8

Q ss_pred             HHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCC----c
Q 014945           73 LPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT----S  147 (415)
Q Consensus        73 i~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~----~  147 (415)
                      ++.+...+.+ ...+.+..|+..|..+...-    .++..-..++|.++.++.++. .++|..|+..|+.+...-    +
T Consensus       424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i----~de~~LDRVlPY~v~l~~Ds~-a~Vra~Al~Tlt~~L~~Vr~~~~  498 (1431)
T KOG1240|consen  424 VSVLTSCIRALKTIQTKLAALELLQELSTYI----DDEVKLDRVLPYFVHLLMDSE-ADVRATALETLTELLALVRDIPP  498 (1431)
T ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHHhhhc----chHHHHhhhHHHHHHHhcCch-HHHHHHHHHHHHHHHhhccCCCc
Confidence            4556666654 45677888888888874321    122223357999999999998 999999999998876522    1


Q ss_pred             hhhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCC------------------chh-----------HHHHHh
Q 014945          148 ENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDS------------------PKC-----------RDLVLS  197 (415)
Q Consensus       148 ~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~nl~~~~------------------~~~-----------~~~~~~  197 (415)
                      .....+. .=++|.|-.++.+ ....++..-+.+|+.||...                  +..           ...+..
T Consensus       499 ~daniF~-eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~  577 (1431)
T KOG1240|consen  499 SDANIFP-EYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHH  577 (1431)
T ss_pred             ccchhhH-hhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHH
Confidence            2222222 2357888888877 33445555455555554211                  100           000000


Q ss_pred             cCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHH
Q 014945          198 NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ  277 (415)
Q Consensus       198 ~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~  277 (415)
                        .+..++.-|..++++-+++..+..|.-||.....  .....-+++.|..+|++.|..+|..-...|..++..-.-+  
T Consensus       578 --~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk--~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r--  651 (1431)
T KOG1240|consen  578 --TVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGK--EKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR--  651 (1431)
T ss_pred             --HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhh--cccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee--
Confidence              1222232222455566777777777777754311  1112346788888999999998888777777665332211  


Q ss_pred             HHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc
Q 014945          278 AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA  355 (415)
Q Consensus       278 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~  355 (415)
                       -++.+++|.|.+-|.+.++.|...|++++.-++...--....+.  .+++....+|-++ +..+|..++..+..+..
T Consensus       652 -s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~  725 (1431)
T KOG1240|consen  652 -SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHP-NLWIRRAVLGIIAAIAR  725 (1431)
T ss_pred             -eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCc-hHHHHHHHHHHHHHHHh
Confidence             23456789999999999999999999999999875432222222  3567788889999 99999999999887775

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.19  E-value=4.5e-06  Score=60.23  Aligned_cols=87  Identities=31%  Similarity=0.517  Sum_probs=70.4

Q ss_pred             HHHHHHhh-cCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHH
Q 014945          243 LPALERLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCI  321 (415)
Q Consensus       243 l~~l~~lL-~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~  321 (415)
                      +|.|++.| +++++.++..++++++.+-   +.        .+++.|..++.++++.++..|+++||.+.          
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~---~~--------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG---DP--------EAIPALIELLKDEDPMVRRAAARALGRIG----------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT---HH--------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC---CH--------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence            57888888 8889999999999999552   11        34799999999999999999999999883          


Q ss_pred             HHCCChHHHHHHhcCCCccchHHHHHHHHH
Q 014945          322 INHQALPCLLDLLTQNYKKSIKKEACWTIS  351 (415)
Q Consensus       322 ~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~  351 (415)
                       +...++.|.+++.++.+..+|..|+++|+
T Consensus        60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 -DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence             12468899999988746667999998885

>PF05536 Neurochondrin: Neurochondrin

Probab=98.18  E-value=0.00042  Score=67.36  Aligned_cols=238  Identities=18%  Similarity=0.154  Sum_probs=164.8

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchh---HHHHHhcCChHHHHHHhccc------hhHhHHHHHHHHHHHhh
Q 014945          158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC---RDLVLSNGALMPLLAQFNEH------AKLSMLRNATWTLSNFC  228 (415)
Q Consensus       158 ~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~---~~~~~~~g~i~~L~~~l~~~------~~~~~~~~a~~~l~~l~  228 (415)
                      .+...+.+|++.+++-+-.++..+.++....+..   +..+.+.=+...+-++|...      +....+.-++..|+.+|
T Consensus         6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~   85 (543)
T PF05536_consen    6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC   85 (543)
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence            3666778888877777777888888888765532   23456655566666777321      34567788888999999


Q ss_pred             hCCCCCchhhhhchHHHHHHhhcCCCh-hHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHH
Q 014945          229 RGKPQPLFEQTRPALPALERLIHSNDD-EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV  307 (415)
Q Consensus       229 ~~~~~~~~~~~~~~l~~l~~lL~~~d~-~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l  307 (415)
                      ..+.......+.+.+|.++..+...+. .+...++.+|..++..++.. +.+++.|.++.|.+.+.+ .+.....|+.++
T Consensus        86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~-~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL  163 (543)
T PF05536_consen   86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGA-KALLESGAVPALCEIIPN-QSFQMEIALNLL  163 (543)
T ss_pred             CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhH-HHHHhcCCHHHHHHHHHh-CcchHHHHHHHH
Confidence            865555556778899999999987766 99999999999999655554 779999999999999977 556788899999


Q ss_pred             HHhhcCChHHHHH---HHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHH-HHHH----HHcCCHHHHHHHhcc
Q 014945          308 GNIVTGDDMQTQC---IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ-IQAI----IEAGIIGPLVNLLLN  379 (415)
Q Consensus       308 ~nl~~~~~~~~~~---~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~-~~~l----~~~~~i~~L~~~l~~  379 (415)
                      .+++.........   -.-..+++.+...+... ....+-+++..|+++....+.. ....    .-..+...+..++.+
T Consensus       164 ~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~-~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~s  242 (543)
T PF05536_consen  164 LNLLSRLGQKSWAEDSQLLHSILPSLARDFSSF-HGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQS  242 (543)
T ss_pred             HHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhc
Confidence            9988754421110   00113456666666666 6777888999999988754211 1111    112355666667766


Q ss_pred             -CCHHHHHHHHHHHHHHhCC
Q 014945          380 -AEFEIKKEAAWAISNATSG  398 (415)
Q Consensus       380 -~~~~v~~~a~~aL~nl~~~  398 (415)
                       ..+.-|..|+.....+...
T Consensus       243 r~~~~~R~~al~Laa~Ll~~  262 (543)
T PF05536_consen  243 RLTPSQRDPALNLAASLLDL  262 (543)
T ss_pred             CCCHHHHHHHHHHHHHHHHH
Confidence             4466677777777776644

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.17  E-value=8e-05  Score=76.73  Aligned_cols=315  Identities=14%  Similarity=0.154  Sum_probs=178.7

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhC-CCchhhHH
Q 014945           74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS-GTSENTRV  152 (415)
Q Consensus        74 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~-~~~~~~~~  152 (415)
                      ..+...+.+.+|..+..++..|..+...-...+........+...|.++|.+.| +-.|..|.+-++-+=+ ++...++.
T Consensus       821 ~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~d-Ef~QDvAsrGlglVYelgd~~~k~~  899 (1702)
T KOG0915|consen  821 KLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDND-EFSQDVASRGLGLVYELGDSSLKKS  899 (1702)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccH-HHHHHHHhcCceEEEecCCchhHHH
Confidence            456667778999998876544443322111111112223345588889998887 7788888777654322 22333333


Q ss_pred             HHhCCChHHHHHhhCC-----CCHHHHH-------------HHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhH
Q 014945          153 VIDHGAVPIFVRLLSS-----PTDDVRE-------------QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKL  214 (415)
Q Consensus       153 ~~~~g~i~~L~~ll~~-----~~~~v~~-------------~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~  214 (415)
                      +++ +.+..|..-=.+     ++.++.+             ....=|+|||.+-.. -+.      +-.++++.+.+-..
T Consensus       900 LV~-sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~q-PdL------VYKFM~LAnh~A~w  971 (1702)
T KOG0915|consen  900 LVD-SLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQ-PDL------VYKFMQLANHNATW  971 (1702)
T ss_pred             HHH-HHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCC-hHH------HHHHHHHhhhhchh
Confidence            332 223333220000     1222221             112234444432211 012      22344444333344


Q ss_pred             hHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCC
Q 014945          215 SMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH  294 (415)
Q Consensus       215 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~  294 (415)
                      .-+.-|++.+..++.............++|.|...=.++|..|+.....+-..|..+....++.... .+++-|+.-|.+
T Consensus       972 nSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~~lt~ 1050 (1702)
T KOG0915|consen  972 NSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLVNLTS 1050 (1702)
T ss_pred             hcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHHhccc
Confidence            4455566667777765433444455667777777777888888876665555566655555454443 478889999999


Q ss_pred             CChhhHHHHHHHHHHhhcCChHHHHHHHHC--CChHHHHHHhcCCCccchHHH---HHHHHHHHhc--C---CHHHHHHH
Q 014945          295 PSPSVLIPALRTVGNIVTGDDMQTQCIINH--QALPCLLDLLTQNYKKSIKKE---ACWTISNITA--G---NVNQIQAI  364 (415)
Q Consensus       295 ~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~--~~l~~L~~ll~~~~~~~v~~~---a~~~l~nl~~--~---~~~~~~~l  364 (415)
                      ..|.+|+.+|-+|..+..+.+..  .+.+.  .+...+.+.+++- ...||+.   ++.+|+.+|.  +   ++..-+..
T Consensus      1051 kewRVReasclAL~dLl~g~~~~--~~~e~lpelw~~~fRvmDDI-KEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~ 1127 (1702)
T KOG0915|consen 1051 KEWRVREASCLALADLLQGRPFD--QVKEKLPELWEAAFRVMDDI-KESVREAADKAARALSKLCVRICDVTNGAKGKEA 1127 (1702)
T ss_pred             hhHHHHHHHHHHHHHHHcCCChH--HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHH
Confidence            99999999999999999987621  12221  3444555566655 5667764   4556666653  1   22223333


Q ss_pred             HHcCCHHHHHHH-hccCCHHHHHHHHHHHHHHhCCCCHH
Q 014945          365 IEAGIIGPLVNL-LLNAEFEIKKEAAWAISNATSGGSNE  402 (415)
Q Consensus       365 ~~~~~i~~L~~~-l~~~~~~v~~~a~~aL~nl~~~~~~~  402 (415)
                      ++. ++|.|++- +-+.-+++|..++..+..++.+.+.+
T Consensus      1128 l~~-iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~ 1165 (1702)
T KOG0915|consen 1128 LDI-ILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKE 1165 (1702)
T ss_pred             HHH-HHHHHhccCcccchHHHHHHHHHHHHHHHHhchhh
Confidence            333 56666552 11456789999999999999776543

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.17  E-value=0.00038  Score=72.01  Aligned_cols=286  Identities=18%  Similarity=0.152  Sum_probs=181.9

Q ss_pred             chHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHH
Q 014945          115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL  194 (415)
Q Consensus       115 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~  194 (415)
                      +||.|.++=-+++ ..+|.....+...+..++....+...+ .++.-|+.-+.+....+|+.++.+|..|..+.+.  +.
T Consensus       999 LIPrLyRY~yDP~-~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~~lt~kewRVReasclAL~dLl~g~~~--~~ 1074 (1702)
T KOG0915|consen  999 LIPRLYRYQYDPD-KKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLVNLTSKEWRVREASCLALADLLQGRPF--DQ 1074 (1702)
T ss_pred             hhHHHhhhccCCc-HHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHHhccchhHHHHHHHHHHHHHHHcCCCh--HH
Confidence            6788888888888 889888888888888876666665554 5677777777788889999999999999987663  23


Q ss_pred             HHhc--CChHHHHHHhccchhHhHHHH---HHHHHHHhhhCC-----CCCchhhhhchHHHHH-HhhcCCChhHHHHHHH
Q 014945          195 VLSN--GALMPLLAQFNEHAKLSMLRN---ATWTLSNFCRGK-----PQPLFEQTRPALPALE-RLIHSNDDEVLTDACW  263 (415)
Q Consensus       195 ~~~~--g~i~~L~~~l~~~~~~~~~~~---a~~~l~~l~~~~-----~~~~~~~~~~~l~~l~-~lL~~~d~~v~~~a~~  263 (415)
                      +.+.  .....+.+.+ ++-.+.++..   ++.+++.+|-..     +.........++|.|+ +.+-+.-++++.-++.
T Consensus      1075 ~~e~lpelw~~~fRvm-DDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~ 1153 (1702)
T KOG0915|consen 1075 VKEKLPELWEAAFRVM-DDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIG 1153 (1702)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHH
Confidence            3221  1233344444 4445555544   456666666432     2222334455666665 2233667899999999


Q ss_pred             HHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHH-----------HHHHHHH-HhhcCCh--HHHHHHH-------
Q 014945          264 ALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI-----------PALRTVG-NIVTGDD--MQTQCII-------  322 (415)
Q Consensus       264 ~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~-----------~a~~~l~-nl~~~~~--~~~~~~~-------  322 (415)
                      ++..++......+.... ...++.|+...+.-++.+..           .|+..+. +.+.+.+  +.+...+       
T Consensus      1154 tl~dl~Kssg~~lkP~~-~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~v 1232 (1702)
T KOG0915|consen 1154 TLMDLAKSSGKELKPHF-PKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISV 1232 (1702)
T ss_pred             HHHHHHHhchhhhcchh-hHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHH
Confidence            99999987765443222 24566666666655544332           2222222 2222222  1111111       


Q ss_pred             HCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCHH
Q 014945          323 NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNE  402 (415)
Q Consensus       323 ~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~  402 (415)
                      -...+|.+.+++..+-.-..|..++..++-++...+......... ++..++..+++.++.+++.-..|.+.++....++
T Consensus      1233 Leelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgK-ll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~d 1311 (1702)
T KOG0915|consen 1233 LEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGK-LLRALFPGAKDRNESVRKAFASAMGYLAKFSSPD 1311 (1702)
T ss_pred             HHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhH-HHHHHhhccccccHHHHHHHHHHHHHHHhcCChH
Confidence            124678888888776566777788888777775211112222222 5667777788889999999999999999988887


Q ss_pred             HHHHH
Q 014945          403 QIKYK  407 (415)
Q Consensus       403 ~~~~l  407 (415)
                      +.+.+
T Consensus      1312 q~qKL 1316 (1702)
T KOG0915|consen 1312 QMQKL 1316 (1702)
T ss_pred             HHHHH
Confidence            87766

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.17  E-value=7.4e-05  Score=71.58  Aligned_cols=242  Identities=17%  Similarity=0.193  Sum_probs=146.9

Q ss_pred             chHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHH
Q 014945          115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL  194 (415)
Q Consensus       115 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~  194 (415)
                      ....|.+.|++.+++.++..++--|+-..-++...       .+.+.+-..|..++.-.-+.|..++|-+.-+....   
T Consensus       414 ~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~-------eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~---  483 (929)
T KOG2062|consen  414 ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANE-------EIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQ---  483 (929)
T ss_pred             HHHHHHHHHHhccchhhhhhhhhhccchhcccccH-------HHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcH---
Confidence            45566666666555666666666555444432211       12344555555555545555555555554333210   


Q ss_pred             HHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChH
Q 014945          195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND  274 (415)
Q Consensus       195 ~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~  274 (415)
                          .++.-++..-...+...+.+-..-.++-...+.       ...+=|.+-+++.+.|+-+|.....++.---.+.. 
T Consensus       484 ----eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygr-------qe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg-  551 (929)
T KOG2062|consen  484 ----EAIEDMLTYAQETQHEKIIRGLAVGIALVVYGR-------QEDADPLIKELLRDKDPILRYGGMYTLALAYVGTG-  551 (929)
T ss_pred             ----HHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhh-------hhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccC-
Confidence                123344444434445555554443333332221       12444566778888888888887765543211111 


Q ss_pred             HHHHHHHcCcHHHHHHh-cCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHH
Q 014945          275 KIQAVIEAGVCPRLVEL-LRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI  353 (415)
Q Consensus       275 ~~~~~~~~~~i~~L~~l-L~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl  353 (415)
                            +.+++..|+.. .++.+.+|+..|..+||-++..++++         ++..+.+|..++++.||..++.+|+-.
T Consensus       552 ------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~---------~~s~V~lLses~N~HVRyGaA~ALGIa  616 (929)
T KOG2062|consen  552 ------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ---------LPSTVSLLSESYNPHVRYGAAMALGIA  616 (929)
T ss_pred             ------chhhHHHhhcccccccchHHHHHHHHHheeeEecChhh---------chHHHHHHhhhcChhhhhhHHHHHhhh
Confidence                  12456777777 57788999999999999999887743         677888888888999999999999999


Q ss_pred             hcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCC
Q 014945          354 TAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS  400 (415)
Q Consensus       354 ~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~  400 (415)
                      |+|+...-       .+..|-.+..++..-||+.|+.++.-+....+
T Consensus       617 CAGtG~~e-------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t  656 (929)
T KOG2062|consen  617 CAGTGLKE-------AINLLEPLTSDPVDFVRQGALIALAMIMIQQT  656 (929)
T ss_pred             hcCCCcHH-------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcc
Confidence            98543211       23333344556667799999999988875443

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.17  E-value=6.3e-06  Score=59.46  Aligned_cols=87  Identities=28%  Similarity=0.443  Sum_probs=69.5

Q ss_pred             hHHHHHhh-cCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHH
Q 014945          116 VPRFIEFL-SRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL  194 (415)
Q Consensus       116 i~~L~~ll-~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~  194 (415)
                      +|.|++.| ++++ +.+|..++++|+.+..  +         .+++.|+.+++++++.++..|+++|+.+-         
T Consensus         1 i~~L~~~l~~~~~-~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPD-PQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG---------   59 (88)
T ss_dssp             HHHHHHHHHTSSS-HHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred             CHHHHHHHhcCCC-HHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence            57899999 6666 9999999999995432  1         35899999999999999999999999882         


Q ss_pred             HHhcCChHHHHHHhccchhHhHHHHHHHHHH
Q 014945          195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLS  225 (415)
Q Consensus       195 ~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~  225 (415)
                        ....++.|..++.++.+..++..+.++|+
T Consensus        60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 --DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence              12278899999966667777888888874

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.16  E-value=0.00056  Score=63.05  Aligned_cols=236  Identities=17%  Similarity=0.062  Sum_probs=163.3

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccch-hHhHHHHHHHHHHHhhhCCCCCchh
Q 014945          159 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA-KLSMLRNATWTLSNFCRGKPQPLFE  237 (415)
Q Consensus       159 i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~-~~~~~~~a~~~l~~l~~~~~~~~~~  237 (415)
                      .+.+..++-+++.+++..+.+++..+..+.... ..+.+.+.-..++.-|..+. +..=+..|+..+..+...+.. ...
T Consensus        27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l-~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~-~~~  104 (371)
T PF14664_consen   27 GERIQCMLLSDSKEVRAAGYRILRYLISDEESL-QILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG-PKE  104 (371)
T ss_pred             HHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHH-HHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC-ccc
Confidence            444444444455999999999999999887754 56666666556666664433 444567888888888876422 223


Q ss_pred             hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHH
Q 014945          238 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ  317 (415)
Q Consensus       238 ~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~  317 (415)
                      .-.+++..++.+.++.++..+..++.+++.++-.+++   .+..+|++..|...+.++..++....+.++-.+...+. .
T Consensus       105 ~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~-t  180 (371)
T PF14664_consen  105 IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPR-T  180 (371)
T ss_pred             CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcc-h
Confidence            3577888999999999999999999999999987774   47789999999999987666688888888888887543 4


Q ss_pred             HHHHHHCCChHHHHHHhcCC------Ccc--chHHHHHHHHHHHhcCCHHHHHHHHHc--CCHHHHHHHhccCCHHHHHH
Q 014945          318 TQCIINHQALPCLLDLLTQN------YKK--SIKKEACWTISNITAGNVNQIQAIIEA--GIIGPLVNLLLNAEFEIKKE  387 (415)
Q Consensus       318 ~~~~~~~~~l~~L~~ll~~~------~~~--~v~~~a~~~l~nl~~~~~~~~~~l~~~--~~i~~L~~~l~~~~~~v~~~  387 (415)
                      ++.+...--++.++.-+.+.      .+.  ..-..+..++..+...=+. .-.+...  ..+..|+..|..+.+++|+.
T Consensus       181 R~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~G-Ll~l~~~~~~~lksLv~~L~~p~~~ir~~  259 (371)
T PF14664_consen  181 RKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPG-LLYLSMNDFRGLKSLVDSLRLPNPEIRKA  259 (371)
T ss_pred             hhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCc-eeeeecCCchHHHHHHHHHcCCCHHHHHH
Confidence            45444433355555444332      022  2334455666655542222 1122222  46888999999999999999


Q ss_pred             HHHHHHHHhCCCCH
Q 014945          388 AAWAISNATSGGSN  401 (415)
Q Consensus       388 a~~aL~nl~~~~~~  401 (415)
                      ....+..+..-..+
T Consensus       260 Ildll~dllrik~p  273 (371)
T PF14664_consen  260 ILDLLFDLLRIKPP  273 (371)
T ss_pred             HHHHHHHHHCCCCC
Confidence            99999999876544

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=98.13  E-value=4.1e-06  Score=54.29  Aligned_cols=55  Identities=27%  Similarity=0.466  Sum_probs=47.3

Q ss_pred             hhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHH
Q 014945          297 PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI  353 (415)
Q Consensus       297 ~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl  353 (415)
                      |.++..|+++||+++...+...... ...+++.|..+|.++ ++.||..|+|+|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~-~~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPY-LPELLPALIPLLQDD-DDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHH-HHHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHH-HHHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence            5689999999999998887766653 447899999999998 889999999999976

...

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.13  E-value=4.6e-05  Score=72.06  Aligned_cols=294  Identities=16%  Similarity=0.089  Sum_probs=181.3

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHH---HHHHHhC--CCc
Q 014945           73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAW---ALTNIAS--GTS  147 (415)
Q Consensus        73 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~---~L~~l~~--~~~  147 (415)
                      +..+.....++|+.++..|+..+..+..+.  ...+.     .....++.+++.+ .++|..|+.   .++|..-  ...
T Consensus       200 ~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~--kL~~~-----~Y~~A~~~lsD~~-e~VR~aAvqlv~v~gn~~p~~~e~  271 (823)
T KOG2259|consen  200 ARGLIYLEHDQDFRVRTHAVEGLLALSEGF--KLSKA-----CYSRAVKHLSDDY-EDVRKAAVQLVSVWGNRCPAPLER  271 (823)
T ss_pred             HHHHHHHhcCCCcchHHHHHHHHHhhcccc--cccHH-----HHHHHHHHhcchH-HHHHHHHHHHHHHHHhcCCCcccc
Confidence            344777777888888888888887764321  11111     3567788898887 899988855   4455541  111


Q ss_pred             hhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHh
Q 014945          148 ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF  227 (415)
Q Consensus       148 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l  227 (415)
                      +..+.-....++..++..+.+-+..++-.|..+||.+-.-+.++-..-    .-..++.-+....  ...+..-...++-
T Consensus       272 e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QT----LdKKlms~lRRkr--~ahkrpk~l~s~G  345 (823)
T KOG2259|consen  272 ESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQT----LDKKLMSRLRRKR--TAHKRPKALYSSG  345 (823)
T ss_pred             hhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHH----HHHHHhhhhhhhh--hcccchHHHHhcC
Confidence            222222222567888888988888899999999998865544332221    1222222221000  0000011111111


Q ss_pred             --hhCC------CC------CchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcC
Q 014945          228 --CRGK------PQ------PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR  293 (415)
Q Consensus       228 --~~~~------~~------~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~  293 (415)
                        ++++      |.      .......|..-++++-|++.-.+|+.+|...++.|+...+....     ..++.|+.+++
T Consensus       346 ewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfN  420 (823)
T KOG2259|consen  346 EWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFN  420 (823)
T ss_pred             CcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhc
Confidence              1111      11      11112255666788888888899999999999999987765432     35789999999


Q ss_pred             CCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHH
Q 014945          294 HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPL  373 (415)
Q Consensus       294 ~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L  373 (415)
                      ++...|+..|+.+|..|+..      ..++...++.+...|.+. ++++|.+.-..|.+.--.+-+.+..++     ..|
T Consensus       421 DE~~~VRL~ai~aL~~Is~~------l~i~eeql~~il~~L~D~-s~dvRe~l~elL~~~~~~d~~~i~m~v-----~~l  488 (823)
T KOG2259|consen  421 DEIEVVRLKAIFALTMISVH------LAIREEQLRQILESLEDR-SVDVREALRELLKNARVSDLECIDMCV-----AHL  488 (823)
T ss_pred             cHHHHHHHHHHHHHHHHHHH------heecHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCCcHHHHHHHH-----HHH
Confidence            99999999999999998864      223445678899999998 999999888888776555555554433     233


Q ss_pred             HHHhccCCHHHHHHHHHHHHHHhCC
Q 014945          374 VNLLLNAEFEIKKEAAWAISNATSG  398 (415)
Q Consensus       374 ~~~l~~~~~~v~~~a~~aL~nl~~~  398 (415)
                      ++.|. .-|.-+.+...++..+...
T Consensus       489 L~~L~-kyPqDrd~i~~cm~~iGqn  512 (823)
T KOG2259|consen  489 LKNLG-KYPQDRDEILRCMGRIGQN  512 (823)
T ss_pred             HHHhh-hCCCCcHHHHHHHHHHhcc
Confidence            33333 2233344555566666654

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.12  E-value=2.7e-05  Score=67.41  Aligned_cols=190  Identities=14%  Similarity=0.102  Sum_probs=120.7

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCC--chhHHHHHh--cCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhch
Q 014945          167 SSPTDDVREQAVWALGNVAGDS--PKCRDLVLS--NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPA  242 (415)
Q Consensus       167 ~~~~~~v~~~a~~~L~nl~~~~--~~~~~~~~~--~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~  242 (415)
                      .+.+.+.+..++.-|..+....  ......+..  ...+..+...+ .+....+...|+.++..++..-...-......+
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l-~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~   95 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQL-SDLRSKVSKTACQLLSDLARQLGSHFEPYADIL   95 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S--HH---HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence            5577888888998888887554  112222221  02445566666 566778999999999999977544433456778


Q ss_pred             HHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh---HHHH
Q 014945          243 LPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD---MQTQ  319 (415)
Q Consensus       243 l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~---~~~~  319 (415)
                      +|.|++.+.+....++..|..+|..++........ +    .++.+...+.+.++.++..++..+..+....+   ....
T Consensus        96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~-~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~  170 (228)
T PF12348_consen   96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYSPK-I----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQ  170 (228)
T ss_dssp             HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--H-H----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred             HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHH-H----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhc
Confidence            99999999999999999999999999876651111 1    15677778899999999999999999987655   1111


Q ss_pred             H-HHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHH
Q 014945          320 C-IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQA  363 (415)
Q Consensus       320 ~-~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~  363 (415)
                      . ..-..+++.+...+.++ ++.||..|-.++..+....++....
T Consensus       171 ~~~~~~~l~~~l~~~l~D~-~~~VR~~Ar~~~~~l~~~~~~~a~~  214 (228)
T PF12348_consen  171 KSAFLKQLVKALVKLLSDA-DPEVREAARECLWALYSHFPERAES  214 (228)
T ss_dssp             -HHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHHHH-HHH--
T ss_pred             ccchHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHCCHhhcc
Confidence            1 11125778899999999 9999999999999887654444433

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=98.09  E-value=0.0012  Score=55.93  Aligned_cols=245  Identities=18%  Similarity=0.214  Sum_probs=149.3

Q ss_pred             CCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHH
Q 014945           83 DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIF  162 (415)
Q Consensus        83 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L  162 (415)
                      .....++.|+..|+++....            .+..+.+...+.+ ...+.+.+.+|+.....           .+++.|
T Consensus        17 ~~l~~r~rALf~Lr~l~~~~------------~i~~i~ka~~d~s-~llkhe~ay~LgQ~~~~-----------~Av~~l   72 (289)
T KOG0567|consen   17 QPLQNRFRALFNLRNLLGPA------------AIKAITKAFIDDS-ALLKHELAYVLGQMQDE-----------DAVPVL   72 (289)
T ss_pred             HHHHHHHHHHHhhhccCChH------------HHHHHHHhcccch-hhhccchhhhhhhhccc-----------hhhHHH
Confidence            33456777888888876422            1455555555554 56677778888766543           458888


Q ss_pred             HHhhCC--CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCC------
Q 014945          163 VRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP------  234 (415)
Q Consensus       163 ~~ll~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~------  234 (415)
                      +..+..  ..+-+|..|..+|+++. + +.         ..+.+-+.. +++-.++...+..++..+-......      
T Consensus        73 ~~vl~desq~pmvRhEAaealga~~-~-~~---------~~~~l~k~~-~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~  140 (289)
T KOG0567|consen   73 VEVLLDESQEPMVRHEAAEALGAIG-D-PE---------SLEILTKYI-KDPCKEVRETCELAIKRLEWKDIIDKIANSS  140 (289)
T ss_pred             HHHhcccccchHHHHHHHHHHHhhc-c-hh---------hHHHHHHHh-cCCccccchHHHHHHHHHHHhhccccccccC
Confidence            887765  45667888888998886 2 21         233344444 5555566666666665554322000      


Q ss_pred             chh-------hhhchHHHHHHhhcCC-Chh-HHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHH
Q 014945          235 LFE-------QTRPALPALERLIHSN-DDE-VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR  305 (415)
Q Consensus       235 ~~~-------~~~~~l~~l~~lL~~~-d~~-v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~  305 (415)
                      ...       ....-+.-+-..|.+. .+. -+..+.+.|.|+-  .++         .+..|.+-+..++.-.+..+..
T Consensus       141 p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g--~Ee---------aI~al~~~l~~~SalfrhEvAf  209 (289)
T KOG0567|consen  141 PYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIG--TEE---------AINALIDGLADDSALFRHEVAF  209 (289)
T ss_pred             ccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccC--cHH---------HHHHHHHhcccchHHHHHHHHH
Confidence            011       1112233333333332 222 2344555555542  222         2455667777778889999999


Q ss_pred             HHHHhhcCChHHHHHHHHCCChHHHHHHhcC-CCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHH
Q 014945          306 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI  384 (415)
Q Consensus       306 ~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v  384 (415)
                      ++|.+-..           -.+|.|.+.|.+ .+.+.||.+|+.+|+.++.  ++         .++.|.+.+.++++-|
T Consensus       210 VfGQl~s~-----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--e~---------~~~vL~e~~~D~~~vv  267 (289)
T KOG0567|consen  210 VFGQLQSP-----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--ED---------CVEVLKEYLGDEERVV  267 (289)
T ss_pred             HHhhccch-----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--HH---------HHHHHHHHcCCcHHHH
Confidence            99988653           236777776643 3478999999999999984  34         3566777888877878


Q ss_pred             HHHHHHHHHHHh
Q 014945          385 KKEAAWAISNAT  396 (415)
Q Consensus       385 ~~~a~~aL~nl~  396 (415)
                      ++.+..+|.-+-
T Consensus       268 ~esc~valdm~e  279 (289)
T KOG0567|consen  268 RESCEVALDMLE  279 (289)
T ss_pred             HHHHHHHHHHHH
Confidence            888777776554

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=98.08  E-value=0.0029  Score=59.96  Aligned_cols=114  Identities=17%  Similarity=0.191  Sum_probs=84.1

Q ss_pred             cHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHH-------------HHHHHHCCChHHHHHHhcCCCccchHHHHHHHH
Q 014945          284 VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ-------------TQCIINHQALPCLLDLLTQNYKKSIKKEACWTI  350 (415)
Q Consensus       284 ~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~-------------~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l  350 (415)
                      +++.|+.+|.+  +.+...+.+.++-+....+..             .|.++. .++|.+++..... +...|..-..+|
T Consensus       272 ~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~-~~~p~L~~~~~~~-~~~~k~~yL~AL  347 (415)
T PF12460_consen  272 LLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT-QVLPKLLEGFKEA-DDEIKSNYLTAL  347 (415)
T ss_pred             HHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH-HHHHHHHHHHhhc-ChhhHHHHHHHH
Confidence            46778888876  567888888888888763322             233333 3567777777776 666888888999


Q ss_pred             HHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCH
Q 014945          351 SNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSN  401 (415)
Q Consensus       351 ~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~  401 (415)
                      +++..+-|..+-.---..++|.|++.|..++.+++..++.+|..+....+.
T Consensus       348 s~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~  398 (415)
T PF12460_consen  348 SHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPE  398 (415)
T ss_pred             HHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHH
Confidence            999997665442222245899999999999999999999999999988643

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=98.05  E-value=0.00034  Score=69.50  Aligned_cols=306  Identities=12%  Similarity=0.114  Sum_probs=200.4

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHH
Q 014945           73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV  152 (415)
Q Consensus        73 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~  152 (415)
                      ++.....++....+.+...+.-...+....+.+....+..+.++|.+-.+..+.+ ..++...+.....++...+..  .
T Consensus       357 ~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~-~~vr~a~a~~~~~~~p~~~k~--~  433 (759)
T KOG0211|consen  357 VPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNA-LHVRSALASVITGLSPILPKE--R  433 (759)
T ss_pred             hhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhccc-chHHHHHhccccccCccCCcC--c
Confidence            4455555555555555555554444433323334445556666888888888877 788887777777665433311  1


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCC
Q 014945          153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP  232 (415)
Q Consensus       153 ~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~  232 (415)
                      -+ ....|.++..+++..+.++.+..+.+..+-...+...-.......++.+..+- ...+..++..+.+.+..++....
T Consensus       434 ti-~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~-~d~~wRvr~ail~~ip~la~q~~  511 (759)
T KOG0211|consen  434 TI-SELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELA-EDLLWRVRLAILEYIPQLALQLG  511 (759)
T ss_pred             Cc-cccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhc-cchhHHHHHHHHHHHHHHHHhhh
Confidence            11 24577888888889999999999888776544433333344444566666665 45577888888888888886532


Q ss_pred             CCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 014945          233 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT  312 (415)
Q Consensus       233 ~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~  312 (415)
                        ........-+.+...+.+...+++..|...+..++......   -.....++.++....+++...|...+.++.-++.
T Consensus       512 --~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~---w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~  586 (759)
T KOG0211|consen  512 --VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSE---WARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAE  586 (759)
T ss_pred             --hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcc---hhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHH
Confidence              11111223344445556666789999888888777433311   1122356777777777778888888888876654


Q ss_pred             CChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHH
Q 014945          313 GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWA  391 (415)
Q Consensus       313 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~a  391 (415)
                      -   .-+.+....++|.+..+..++ .+.||-.++..+-.+... ..    ...+..+.|.+..+-++.+.+++..|..+
T Consensus       587 v---~g~ei~~~~Llp~~~~l~~D~-vanVR~nvak~L~~i~~~L~~----~~~~~~v~pll~~L~~d~~~dvr~~a~~a  658 (759)
T KOG0211|consen  587 V---LGQEITCEDLLPVFLDLVKDP-VANVRINVAKHLPKILKLLDE----SVRDEEVLPLLETLSSDQELDVRYRAILA  658 (759)
T ss_pred             H---hccHHHHHHHhHHHHHhccCC-chhhhhhHHHHHHHHHhhcch----HHHHHHHHHHHHHhccCcccchhHHHHHH
Confidence            2   122344557889999999999 999999999999988863 22    33444567788888888888888888877


Q ss_pred             HHHHh
Q 014945          392 ISNAT  396 (415)
Q Consensus       392 L~nl~  396 (415)
                      ++.+.
T Consensus       659 ~~~i~  663 (759)
T KOG0211|consen  659 FGSIE  663 (759)
T ss_pred             HHHHH
Confidence            77665

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=98.04  E-value=0.0021  Score=63.37  Aligned_cols=316  Identities=11%  Similarity=0.086  Sum_probs=189.8

Q ss_pred             CCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHH
Q 014945           82 SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPI  161 (415)
Q Consensus        82 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~  161 (415)
                      +..|.....+.+.+.+..+..  .....+. .-++...+..+..+..+-++..|+.+++..++  ++..... ..+++..
T Consensus       461 ~e~P~Ll~Ra~~~i~~fs~~~--~~~~~~~-~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~-~p~ild~  534 (1005)
T KOG2274|consen  461 QESPFLLLRAFLTISKFSSST--VINPQLL-QHFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLSL-QPMILDG  534 (1005)
T ss_pred             ccCHHHHHHHHHHHHHHHhhh--ccchhHH-HHHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceecccc-chHHHHH
Confidence            345666667777777665431  1111111 11344555555554447788888888888774  3222222 2377888


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHh-ccchhHhHHHHHHHHHHHhhhCCCCCchhhhh
Q 014945          162 FVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF-NEHAKLSMLRNATWTLSNFCRGKPQPLFEQTR  240 (415)
Q Consensus       162 L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l-~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~  240 (415)
                      |+++......++.-..+.+|+..+..+|+.... .+..+.|..+.+. ..+.++.+...+-.++..++... ........
T Consensus       535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~as-~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~-~~~g~m~e  612 (1005)
T KOG2274|consen  535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAAS-MESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA-ANYGPMQE  612 (1005)
T ss_pred             HHHHcccccHHHHHHHHHHHHHHhccChhhhhh-hhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-HhhcchHH
Confidence            899888888889999999999999888876333 3444555555554 35567777777778888777642 22223446


Q ss_pred             chHHHHHHhhcCCC----hhHHHHHHHHHHHhccCCh-HHHHHHHHcCcHHHHHHhc-CCCChhhHHHHHHHHHHhhcCC
Q 014945          241 PALPALERLIHSND----DEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGD  314 (415)
Q Consensus       241 ~~l~~l~~lL~~~d----~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~l~nl~~~~  314 (415)
                      .++|.++..+..++    .....-++..|..+..+.+ ...+.++ .-++|.+.++. .+++......+-.||..+....
T Consensus       613 ~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~-~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~  691 (1005)
T KOG2274|consen  613 RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI-CYAFPAVAKITLHSDDHETLQNATECLRALISVT  691 (1005)
T ss_pred             HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH-HHHhHHhHhheeecCChHHHHhHHHHHHHHHhcC
Confidence            78999999998765    4555566666665554433 2323233 34667777775 5556778888999999998877


Q ss_pred             hHHHHHHHHCCChH--HHHHHhcCCCccchHHHHHHHHHHH----hcCCHHHHHHHHHcCCHHHHHHHhc-cCCHHHHHH
Q 014945          315 DMQTQCIINHQALP--CLLDLLTQNYKKSIKKEACWTISNI----TAGNVNQIQAIIEAGIIGPLVNLLL-NAEFEIKKE  387 (415)
Q Consensus       315 ~~~~~~~~~~~~l~--~L~~ll~~~~~~~v~~~a~~~l~nl----~~~~~~~~~~l~~~~~i~~L~~~l~-~~~~~v~~~  387 (415)
                      .++...--+.++..  .+++.+..=-+++.-..+|..+|.+    ..+-+..+...++. ++..++.-|. .....+-..
T Consensus       692 ~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d~-IL~Avisrmq~ae~lsviQs  770 (1005)
T KOG2274|consen  692 LEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLDQ-ILRAVISRLQQAETLSVIQS  770 (1005)
T ss_pred             HHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHHH-HHHHHHHHHHHhhhHHHHHH
Confidence            66665555544443  3333332111333344444444443    33322223332222 3344444443 466888888


Q ss_pred             HHHHHHHHhCCCCHHHHHHH
Q 014945          388 AAWAISNATSGGSNEQIKYK  407 (415)
Q Consensus       388 a~~aL~nl~~~~~~~~~~~l  407 (415)
                      -+.+++++........+..|
T Consensus       771 Li~VfahL~~t~~~~~l~FL  790 (1005)
T KOG2274|consen  771 LIMVFAHLVHTDLDQLLNFL  790 (1005)
T ss_pred             HHHHHHHHhhCCHHHHHHHH
Confidence            99999999877555554555

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.02  E-value=0.0023  Score=58.10  Aligned_cols=224  Identities=13%  Similarity=0.124  Sum_probs=160.8

Q ss_pred             hhccHHHHHHhhcCCCHHHHHHHHHHHHHHhccC----CCC----chhHHHhcCchHHHHHhhcCCC-----ChHHHHHH
Q 014945           69 KLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIE----RSP----PINEVIQSGVVPRFIEFLSRDD-----FPQLQFEA  135 (415)
Q Consensus        69 ~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~----~~~----~~~~~~~~g~i~~L~~ll~~~~-----~~~i~~~a  135 (415)
                      .+.+++.++++|..+|.++-...+..+..+...+    ..+    .++.+++.++++.|++.+..-+     ...-.+.+
T Consensus       123 eln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~  202 (536)
T KOG2734|consen  123 ELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNT  202 (536)
T ss_pred             HhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHH
Confidence            3578999999999999999999998888875432    112    2466789999999999887544     12334556


Q ss_pred             HHHHHHHhCCCchhhHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhc----
Q 014945          136 AWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN----  209 (415)
Q Consensus       136 ~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~----  209 (415)
                      +.++-|+..-.++....+++.|.+.-|+.-+..  +-..-...|...++-+..++...+...-...++..+++-+.    
T Consensus       203 L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~  282 (536)
T KOG2734|consen  203 LAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKR  282 (536)
T ss_pred             HHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhc
Confidence            778889999889999999999888877774432  34455677888888888888777788888888999888763    


Q ss_pred             cc----hhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh--HHHHHHHHcC
Q 014945          210 EH----AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN--DKIQAVIEAG  283 (415)
Q Consensus       210 ~~----~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~--~~~~~~~~~~  283 (415)
                      ++    ...++.++...+|+.+.....+.........+....-+++. ....+..++.+|-+...+++  .....+++..
T Consensus       283 ~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~l  361 (536)
T KOG2734|consen  283 HDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEIL  361 (536)
T ss_pred             cCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            11    24567788888888777765444444445555555555544 45567788899988887766  5556677777


Q ss_pred             cHHHHHHhcC
Q 014945          284 VCPRLVELLR  293 (415)
Q Consensus       284 ~i~~L~~lL~  293 (415)
                      ++..+.....
T Consensus       362 GLrtiF~~FM  371 (536)
T KOG2734|consen  362 GLRTIFPLFM  371 (536)
T ss_pred             hHHHHHHHHh
Confidence            7777766653

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.01  E-value=0.00039  Score=60.36  Aligned_cols=256  Identities=13%  Similarity=0.121  Sum_probs=154.9

Q ss_pred             CHHHHHHHHHHHHHHhccCCCCchhH-HHhcCchHHHHHhhcCCC-ChHHHHHHHHHHHHHhCCCchhhHHHHh-CCChH
Q 014945           84 DRNIQLDATTQFRKLLSIERSPPINE-VIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSENTRVVID-HGAVP  160 (415)
Q Consensus        84 ~~~~~~~a~~~l~~l~~~~~~~~~~~-~~~~g~i~~L~~ll~~~~-~~~i~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~  160 (415)
                      ++-.+..|+.++.++...  .+.... ..+...-..++..++..- ..++|+.++.++.-++.. +++.+.+-+ ...+.
T Consensus       162 ~~lTrlfav~cl~~l~~~--~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~-~~~aqdi~K~~dli~  238 (432)
T COG5231         162 DFLTRLFAVSCLSNLEFD--VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFS-KECAQDIDKMDDLIN  238 (432)
T ss_pred             HHHHHHHHHHHHhhhhhh--HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC-HHHHHHHHHHHHHHH
Confidence            444556666666666432  122222 224445567777777632 168999999999988885 666543333 24566


Q ss_pred             HHHHhhCC-CCHHHHHHHHHHHHHhcCCCc-hhHHHHHhcCChHHHHHHhccc--hhHhHHHHHHHHHHHhhhCCCCCch
Q 014945          161 IFVRLLSS-PTDDVREQAVWALGNVAGDSP-KCRDLVLSNGALMPLLAQFNEH--AKLSMLRNATWTLSNFCRGKPQPLF  236 (415)
Q Consensus       161 ~L~~ll~~-~~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~g~i~~L~~~l~~~--~~~~~~~~a~~~l~~l~~~~~~~~~  236 (415)
                      .|+++... ..+.+.+.++..+.|++...| .......-.|-+.+-++.|...  .+++++...-..=+.+-...  ...
T Consensus       239 dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~--k~l  316 (432)
T COG5231         239 DLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNT--KKL  316 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhh--hhh
Confidence            67777665 356788899999999987443 2222233344455666666432  36666655544444443321  111


Q ss_pred             hhhhchHHHHHH-hhcCCChhHHHHHHHHHHHhccCChHHHHHHHHc--CcHHHHHHhcCCCChh-hHHHHHHHHHHhhc
Q 014945          237 EQTRPALPALER-LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA--GVCPRLVELLRHPSPS-VLIPALRTVGNIVT  312 (415)
Q Consensus       237 ~~~~~~l~~l~~-lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~--~~i~~L~~lL~~~~~~-v~~~a~~~l~nl~~  312 (415)
                      ......+.-|-. .|..+.+. +..-.|.         .+...+.+.  .++..|..++++.++. ...-||.-++.++.
T Consensus       317 ~~fD~Y~~ELdsg~l~wSp~H-~~~dFWs---------~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr  386 (432)
T COG5231         317 CIFDNYLNELDSGRLEWSPYH-HKKDFWS---------TNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVR  386 (432)
T ss_pred             hHHHHHHHHHhhCcccCCCcc-cccCchh---------hhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHH
Confidence            111111222211 12211111 1111111         122223332  4678899999887765 66778999999999


Q ss_pred             CChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc
Q 014945          313 GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA  355 (415)
Q Consensus       313 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~  355 (415)
                      ..|+....+...|+-..++.+++|+ +++||-+|..++..+..
T Consensus       387 ~~PE~~~vl~Kyg~k~~im~L~nh~-d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         387 ASPEINAVLSKYGVKEIIMNLINHD-DDDVKFEALQALQTCIS  428 (432)
T ss_pred             hCchHHHHHHHhhhHHHHHHHhcCC-CchhhHHHHHHHHHHHh
Confidence            9999999888999999999999999 99999999999876654

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.00  E-value=0.0039  Score=56.72  Aligned_cols=229  Identities=12%  Similarity=0.162  Sum_probs=158.5

Q ss_pred             CCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCC-----c----hhhHHHHhCCChHHHHHhhCCCCHHH-
Q 014945          104 SPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT-----S----ENTRVVIDHGAVPIFVRLLSSPTDDV-  173 (415)
Q Consensus       104 ~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~-----~----~~~~~~~~~g~i~~L~~ll~~~~~~v-  173 (415)
                      ++....+++.++++.|+.+|.+.+ .++-...+..+..++..+     .    .-.+.+++.++++.|++-+..-++.+ 
T Consensus       115 PdLYp~lveln~V~slL~LLgHeN-tDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvk  193 (536)
T KOG2734|consen  115 PDLYPILVELNAVQSLLELLGHEN-TDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVK  193 (536)
T ss_pred             hHHHHHHHHhccHHHHHHHhcCCC-chhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcch
Confidence            455567889999999999999998 899999999998888532     2    23456777899999999876533333 


Q ss_pred             -----HHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhcc-chhHhHHHHHHHHHHHhhhCCCC-CchhhhhchHHHH
Q 014945          174 -----REQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE-HAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPAL  246 (415)
Q Consensus       174 -----~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~-~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~~l~~l  246 (415)
                           ...++..+-|+..-.+.+...+.+.|.+.-|+..+.. ..-.....+|..+++-+...... ......-.++..+
T Consensus       194 eea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~l  273 (536)
T KOG2734|consen  194 EEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVL  273 (536)
T ss_pred             hhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHH
Confidence                 4566778888988888888888899888888885533 23445667788888888776532 2222223344444


Q ss_pred             HHhh----cCC-----ChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh--
Q 014945          247 ERLI----HSN-----DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD--  315 (415)
Q Consensus       247 ~~lL----~~~-----d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~--  315 (415)
                      ++-+    .++     ..+..++...+|+.+....... ..++...+++...-+++. ....+..++++|-....+.+  
T Consensus       274 L~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr-~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt  351 (536)
T KOG2734|consen  274 LRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANR-ERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGT  351 (536)
T ss_pred             HhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhh-hhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCch
Confidence            4433    221     2456677777777776665554 456666666665555554 44567789999999998877  


Q ss_pred             HHHHHHHHCCChHHHHHHhc
Q 014945          316 MQTQCIINHQALPCLLDLLT  335 (415)
Q Consensus       316 ~~~~~~~~~~~l~~L~~ll~  335 (415)
                      .....+++..++..++.+.-
T Consensus       352 ~~C~kfVe~lGLrtiF~~FM  371 (536)
T KOG2734|consen  352 PNCNKFVEILGLRTIFPLFM  371 (536)
T ss_pred             HHHHHHHHHHhHHHHHHHHh
Confidence            66777788877777776543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.99  E-value=0.00063  Score=68.93  Aligned_cols=272  Identities=14%  Similarity=0.128  Sum_probs=171.4

Q ss_pred             chHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcC---CCchh
Q 014945          115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG---DSPKC  191 (415)
Q Consensus       115 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~---~~~~~  191 (415)
                      +++.+...++.-...+.+..|+..|..++....+..  .+ .-++|.++.++.++...||..|+.+|..+..   +-+..
T Consensus       423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~--~L-DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~  499 (1431)
T KOG1240|consen  423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEV--KL-DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPS  499 (1431)
T ss_pred             eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHH--HH-hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence            456666666654447889999999988886422211  11 2479999999999999999999999988753   22322


Q ss_pred             HHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhh------------------CCCCC------ch----hhh-hch
Q 014945          192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR------------------GKPQP------LF----EQT-RPA  242 (415)
Q Consensus       192 ~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~------------------~~~~~------~~----~~~-~~~  242 (415)
                      -..++..-.+|.|-.++.++....++...+..|..|+.                  +.+..      ..    ... ..+
T Consensus       500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V  579 (1431)
T KOG1240|consen  500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTV  579 (1431)
T ss_pred             cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHH
Confidence            23344444566666666433333333333333333321                  11111      00    111 222


Q ss_pred             HHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHH
Q 014945          243 LPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII  322 (415)
Q Consensus       243 l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~  322 (415)
                      -...+.++.++++-|+...+..|.-||......   --+.=+++.|+.+|++.++.+|..-...|.-++..-.   ..-.
T Consensus       580 ~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~---ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG---~rs~  653 (1431)
T KOG1240|consen  580 EQMVSSLLSDSPPIVKRALLESIIPLCVFFGKE---KSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG---WRSV  653 (1431)
T ss_pred             HHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhc---ccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEe---eeeH
Confidence            234556677777788888888887777422110   0011257889999999999998887777765554221   1123


Q ss_pred             HCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945          323 NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG  398 (415)
Q Consensus       323 ~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~  398 (415)
                      +.+++|.|.+-|.++ .+.|...|..++.-++...--....+.+  ++....-+|-+++.=+|..++..+..++..
T Consensus       654 seyllPLl~Q~ltD~-EE~Viv~aL~~ls~Lik~~ll~K~~v~~--i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~  726 (1431)
T KOG1240|consen  654 SEYLLPLLQQGLTDG-EEAVIVSALGSLSILIKLGLLRKPAVKD--ILQDVLPLLCHPNLWIRRAVLGIIAAIARQ  726 (1431)
T ss_pred             HHHHHHHHHHhccCc-chhhHHHHHHHHHHHHHhcccchHHHHH--HHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence            457889999999999 9999999999999998731111122222  455666677788888999999988887754

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=97.98  E-value=0.00065  Score=63.60  Aligned_cols=283  Identities=13%  Similarity=0.110  Sum_probs=152.2

Q ss_pred             HhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCC
Q 014945           78 AGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHG  157 (415)
Q Consensus        78 ~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g  157 (415)
                      ..|.+.-..++..+++.++.+....   ....+++ ..+..|-.+|+++. ...|+.|+++|..++-..|+....     
T Consensus       271 ~wls~k~emV~lE~Ar~v~~~~~~n---v~~~~~~-~~vs~L~~fL~s~r-v~~rFsA~Riln~lam~~P~kv~v-----  340 (898)
T COG5240         271 SWLSDKFEMVFLEAARAVCALSEEN---VGSQFVD-QTVSSLRTFLKSTR-VVLRFSAMRILNQLAMKYPQKVSV-----  340 (898)
T ss_pred             HHhcCcchhhhHHHHHHHHHHHHhc---cCHHHHH-HHHHHHHHHHhcch-HHHHHHHHHHHHHHHhhCCceeee-----
Confidence            3444555677777888777764321   1122222 24667777888877 788888888888888765543211     


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchh
Q 014945          158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE  237 (415)
Q Consensus       158 ~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~  237 (415)
                      +=+-+-.++.+.+..+...|+.+|..-  +..+..+.++.  .++.++.-+    +......+..++..||...|.....
T Consensus       341 cN~evEsLIsd~Nr~IstyAITtLLKT--Gt~e~idrLv~--~I~sfvhD~----SD~FKiI~ida~rsLsl~Fp~k~~s  412 (898)
T COG5240         341 CNKEVESLISDENRTISTYAITTLLKT--GTEETIDRLVN--LIPSFVHDM----SDGFKIIAIDALRSLSLLFPSKKLS  412 (898)
T ss_pred             cChhHHHHhhcccccchHHHHHHHHHc--CchhhHHHHHH--HHHHHHHhh----ccCceEEeHHHHHHHHhhCcHHHHH
Confidence            112233455555555544444444332  22222233222  222222222    2333344445555555444433332


Q ss_pred             hhhchHHHHHHhh-cCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCC-hhhHHHHHHHHHHhhcCCh
Q 014945          238 QTRPALPALERLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS-PSVLIPALRTVGNIVTGDD  315 (415)
Q Consensus       238 ~~~~~l~~l~~lL-~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~v~~~a~~~l~nl~~~~~  315 (415)
                      .    +..|...| +...-+....+..++..+....++..+     .++..|..++.+.+ +.+.   +++|+-+....|
T Consensus       413 ~----l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skE-----raLe~LC~fIEDcey~~I~---vrIL~iLG~EgP  480 (898)
T COG5240         413 Y----LDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKE-----RALEVLCTFIEDCEYHQIT---VRILGILGREGP  480 (898)
T ss_pred             H----HHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHH-----HHHHHHHHHHhhcchhHHH---HHHHHHhcccCC
Confidence            2    33333322 344566777788888877766654433     23456666665443 3344   444444433222


Q ss_pred             HHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHH
Q 014945          316 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA  395 (415)
Q Consensus       316 ~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl  395 (415)
                      ....   ....+-++..-+--. +.-+|..|..+|+.++-+-.+   .+....+...|-+++.+.|.+||..|..+|.++
T Consensus       481 ~a~~---P~~yvrhIyNR~iLE-N~ivRsaAv~aLskf~ln~~d---~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~  553 (898)
T COG5240         481 RAKT---PGKYVRHIYNRLILE-NNIVRSAAVQALSKFALNISD---VVSPQSVENALKRCLNDQDDEVRDRASFLLRNM  553 (898)
T ss_pred             CCCC---cchHHHHHHHHHHHh-hhHHHHHHHHHHHHhccCccc---cccHHHHHHHHHHHhhcccHHHHHHHHHHHHhh
Confidence            1100   011233444433334 668999999999888763221   112222556788889999999999999999998


Q ss_pred             hC
Q 014945          396 TS  397 (415)
Q Consensus       396 ~~  397 (415)
                      -.
T Consensus       554 ~~  555 (898)
T COG5240         554 RL  555 (898)
T ss_pred             hh
Confidence            63

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=97.94  E-value=0.011  Score=59.77  Aligned_cols=312  Identities=15%  Similarity=0.127  Sum_probs=180.2

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (415)
Q Consensus        72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  151 (415)
                      .+..|++.+++.|..++..|+..+..+.+.-  | . .+.+ .++...+.++...+.+..-..|+-+|+.++...---..
T Consensus       342 vie~Lls~l~d~dt~VrWSaAKg~grvt~rl--p-~-~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps  416 (1133)
T KOG1943|consen  342 VIEHLLSALSDTDTVVRWSAAKGLGRVTSRL--P-P-ELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS  416 (1133)
T ss_pred             HHHHHHHhccCCcchhhHHHHHHHHHHHccC--c-H-HHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence            4677888888999999999999999998653  2 1 1211 24566666666544356677899999999975322222


Q ss_pred             HHHhCCChHHHHHhhC--------CCCHHHHHHHHHHHHHhcCCCchh-HHHHHhcCChHHHHHHhccchhHhHHHHHHH
Q 014945          152 VVIDHGAVPIFVRLLS--------SPTDDVREQAVWALGNVAGDSPKC-RDLVLSNGALMPLLAQFNEHAKLSMLRNATW  222 (415)
Q Consensus       152 ~~~~~g~i~~L~~ll~--------~~~~~v~~~a~~~L~nl~~~~~~~-~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~  222 (415)
                      .+.  .++|.++.-|.        +....+|+.|+++++.++...... -+.+.. .....|+..---+.+..+++.|..
T Consensus       417 ~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~-~L~s~LL~~AlFDrevncRRAAsA  493 (1133)
T KOG1943|consen  417 LLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQ-SLASALLIVALFDREVNCRRAASA  493 (1133)
T ss_pred             HHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHH-HHHHHHHHHHhcCchhhHhHHHHH
Confidence            222  24566665553        134679999999999998543321 111111 122222222225667788888888


Q ss_pred             HHHHhhhCCCCCc----hh-----------------------hhhchHHH-HHHh----hcCCChhHHHHHHHHHHHhcc
Q 014945          223 TLSNFCRGKPQPL----FE-----------------------QTRPALPA-LERL----IHSNDDEVLTDACWALSYLSD  270 (415)
Q Consensus       223 ~l~~l~~~~~~~~----~~-----------------------~~~~~l~~-l~~l----L~~~d~~v~~~a~~~l~~l~~  270 (415)
                      ++-......++.+    ..                       ...+.... +-++    +.+-|..+++-+.++|..|+.
T Consensus       494 AlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~  573 (1133)
T KOG1943|consen  494 ALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSL  573 (1133)
T ss_pred             HHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence            8776654422211    00                       01122222 2222    345689999999999999987


Q ss_pred             CChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHH---HHHHH---CCC---hHHHHH-HhcCCCcc
Q 014945          271 GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT---QCIIN---HQA---LPCLLD-LLTQNYKK  340 (415)
Q Consensus       271 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~---~~~~~---~~~---l~~L~~-ll~~~~~~  340 (415)
                      ..++.    ...+.++.++....+.+...+.-+..+.|.++.+.....   ..+.+   ++.   ++.+.. .+..+...
T Consensus       574 ~~pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~  649 (1133)
T KOG1943|consen  574 TEPKY----LADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGT  649 (1133)
T ss_pred             hhHHh----hcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHH
Confidence            66543    335677888888878888777777666666654322111   10111   121   222222 22222122


Q ss_pred             chHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHh
Q 014945          341 SIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT  396 (415)
Q Consensus       341 ~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~  396 (415)
                      -.+...+..+-++...........+-.+.-..+.+.+..++ .+|..|.++++.++
T Consensus       650 lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~  704 (1133)
T KOG1943|consen  650 LMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLV  704 (1133)
T ss_pred             HHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHH
Confidence            34555566666776654443444443434445555554444 78888999988887

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.93  E-value=0.0001  Score=53.52  Aligned_cols=93  Identities=14%  Similarity=0.187  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc
Q 014945          300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN  379 (415)
Q Consensus       300 ~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~  379 (415)
                      |..++.+|+.++.+-+......++ .++++++..+.++ +++||..||.+|.|++....+.+-... ..+++.|.+++.+
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D~-d~rVRy~AcEaL~ni~k~~~~~~l~~f-~~IF~~L~kl~~D   79 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDDQ-DSRVRYYACEALYNISKVARGEILPYF-NEIFDALCKLSAD   79 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC
Confidence            566788888887766655554444 6889999999999 999999999999999974443333322 3489999999999


Q ss_pred             CCHHHHHHHHHHHHHHh
Q 014945          380 AEFEIKKEAAWAISNAT  396 (415)
Q Consensus       380 ~~~~v~~~a~~aL~nl~  396 (415)
                      .++.||..| +.|-++.
T Consensus        80 ~d~~Vr~~a-~~Ld~ll   95 (97)
T PF12755_consen   80 PDENVRSAA-ELLDRLL   95 (97)
T ss_pred             CchhHHHHH-HHHHHHh
Confidence            999998866 5555543

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.91  E-value=0.018  Score=57.20  Aligned_cols=141  Identities=16%  Similarity=0.154  Sum_probs=111.6

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (415)
Q Consensus        72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  151 (415)
                      -++.+++...+.|.+++...-..|..+....   |...+.   .++.+.+=+++++ +.+|..|++.++.+=.  ++...
T Consensus        56 Lf~dViK~~~trd~ElKrL~ylYl~~yak~~---P~~~lL---avNti~kDl~d~N-~~iR~~AlR~ls~l~~--~el~~  126 (757)
T COG5096          56 LFPDVIKNVATRDVELKRLLYLYLERYAKLK---PELALL---AVNTIQKDLQDPN-EEIRGFALRTLSLLRV--KELLG  126 (757)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHhccC---HHHHHH---HHHHHHhhccCCC-HHHHHHHHHHHHhcCh--HHHHH
Confidence            3577777777888888888888888886543   233333   4788899999999 9999999999987654  22222


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhC
Q 014945          152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  230 (415)
Q Consensus       152 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~  230 (415)
                           .+++.+.+++.++++.||..|+.|+.++-.-++   +.+.+.|.+..+..++ .+.++.+..+|+.++..+...
T Consensus       127 -----~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~-~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         127 -----NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELV-ADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             -----HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHh-hCCCchHHHHHHHHHHHhchh
Confidence                 357899999999999999999999999986654   4667777777777777 889999999999999988765

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.88  E-value=0.00089  Score=66.05  Aligned_cols=164  Identities=13%  Similarity=0.169  Sum_probs=124.9

Q ss_pred             hHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhc
Q 014945          213 KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL  292 (415)
Q Consensus       213 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL  292 (415)
                      +..-....=.+++.+..+++      +..++|-+++.+.+.|.++..-.-.-+...+...++..  +.   ++..+..=+
T Consensus        33 ~~~kidAmK~iIa~M~~G~d------mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~--lL---avNti~kDl  101 (757)
T COG5096          33 DYKKIDAMKKIIAQMSLGED------MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELA--LL---AVNTIQKDL  101 (757)
T ss_pred             hHHHHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHH--HH---HHHHHHhhc
Confidence            33344444466677776643      56677888888888899988887777777777766432  22   357777888


Q ss_pred             CCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHH
Q 014945          293 RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGP  372 (415)
Q Consensus       293 ~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~  372 (415)
                      .++++.+|..|+++++.+-..      .+++ .+++.+.+++.++ ++.||+.|+.++..+-.-+++   .+-+.|.+..
T Consensus       102 ~d~N~~iR~~AlR~ls~l~~~------el~~-~~~~~ik~~l~d~-~ayVRk~Aalav~kly~ld~~---l~~~~g~~~~  170 (757)
T COG5096         102 QDPNEEIRGFALRTLSLLRVK------ELLG-NIIDPIKKLLTDP-HAYVRKTAALAVAKLYRLDKD---LYHELGLIDI  170 (757)
T ss_pred             cCCCHHHHHHHHHHHHhcChH------HHHH-HHHHHHHHHccCC-cHHHHHHHHHHHHHHHhcCHh---hhhcccHHHH
Confidence            999999999999999887431      2222 5678999999999 999999999999999875444   4456788889


Q ss_pred             HHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945          373 LVNLLLNAEFEIKKEAAWAISNATSG  398 (415)
Q Consensus       373 L~~~l~~~~~~v~~~a~~aL~nl~~~  398 (415)
                      +..++.+.+|.|..+|..+|..+-..
T Consensus       171 l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         171 LKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             HHHHhhCCCchHHHHHHHHHHHhchh
Confidence            99999999999999999999988754

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.88  E-value=0.00088  Score=64.97  Aligned_cols=253  Identities=18%  Similarity=0.208  Sum_probs=131.9

Q ss_pred             chHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHH
Q 014945          115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL  194 (415)
Q Consensus       115 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~  194 (415)
                      ..+.+-.++.+.. ..+..+|++++.++...++....     ..+..|--+++++...+|-.|.++|..+|.-.|..-..
T Consensus       246 ~~~fl~s~l~~K~-emV~~EaArai~~l~~~~~r~l~-----pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~  319 (865)
T KOG1078|consen  246 LFPFLESCLRHKS-EMVIYEAARAIVSLPNTNSRELA-----PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTV  319 (865)
T ss_pred             HHHHHHHHHhchh-HHHHHHHHHHHhhccccCHhhcc-----hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccc
Confidence            4556666777777 89999999999988775433221     26777888889999999999999999999776642111


Q ss_pred             HHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChH
Q 014945          195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND  274 (415)
Q Consensus       195 ~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~  274 (415)
                        ..--++.|+    .+.+..   .+..++..+..............-++..+.=+.++..-+..+++.+++....... 
T Consensus       320 --cN~elE~lI----td~Nrs---Iat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~-  389 (865)
T KOG1078|consen  320 --CNLDLESLI----TDSNRS---IATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKH-  389 (865)
T ss_pred             --cchhHHhhh----cccccc---hhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHH-
Confidence              000122222    222222   2222333333222222222222333333333333333444455554444321110 


Q ss_pred             HHHHHHHcCcHHHHHHhcCCC-ChhhHHHHHHHHHHhhcCChHHHHH--------HH-----------------------
Q 014945          275 KIQAVIEAGVCPRLVELLRHP-SPSVLIPALRTVGNIVTGDDMQTQC--------II-----------------------  322 (415)
Q Consensus       275 ~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~l~nl~~~~~~~~~~--------~~-----------------------  322 (415)
                             .+.+..|..+|... .-+.......++..++...++....        +.                       
T Consensus       390 -------~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~  462 (865)
T KOG1078|consen  390 -------TVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAP  462 (865)
T ss_pred             -------HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCC
Confidence                   11122222222211 1122222222222222211111100        00                       


Q ss_pred             -HCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHh
Q 014945          323 -NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT  396 (415)
Q Consensus       323 -~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~  396 (415)
                       ....+..+...+-=. +..+|..|..++.++..+++.-.     ..+...|.+++.+.|.++|..|..+|.++-
T Consensus       463 ~Pskyir~iyNRviLE-n~ivRaaAv~alaKfg~~~~~l~-----~sI~vllkRc~~D~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  463 NPSKYIRFIYNRVILE-NAIVRAAAVSALAKFGAQDVVLL-----PSILVLLKRCLNDSDDEVRDRATFYLKNLE  531 (865)
T ss_pred             CcchhhHHHhhhhhhh-hhhhHHHHHHHHHHHhcCCCCcc-----ccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence             112233344333333 67889999999999996544322     225667888889999999999999999988

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.82  E-value=6.6e-05  Score=45.10  Aligned_cols=38  Identities=47%  Similarity=0.682  Sum_probs=35.2

Q ss_pred             HHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHh
Q 014945          359 NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT  396 (415)
Q Consensus       359 ~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~  396 (415)
                      ++...+++.|+++.|+.++.++++++++.|+|+|.|++
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            46778889999999999999999999999999999987

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.81  E-value=0.00013  Score=53.05  Aligned_cols=67  Identities=16%  Similarity=0.354  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhcCCCchhHHHHHh
Q 014945          131 LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLL--SSPTDDVREQAVWALGNVAGDSPKCRDLVLS  197 (415)
Q Consensus       131 i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll--~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~  197 (415)
                      ++...+.+|+|++..++...+.+.+.|++|.++...  +..+|.+++.|++++.|++.++++.+..+.+
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            356788999999999999999999999999999964  4578999999999999999999988777654

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=97.79  E-value=0.0036  Score=61.85  Aligned_cols=232  Identities=14%  Similarity=0.159  Sum_probs=157.1

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHH
Q 014945          167 SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPAL  246 (415)
Q Consensus       167 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l  246 (415)
                      .+..+.+.-.+.|+++.++...+.......  .++...+..+..+..+.++..++.+++..|.  +........+++..|
T Consensus       460 ~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~~p~ild~L  535 (1005)
T KOG2274|consen  460 YQESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLSLQPMILDGL  535 (1005)
T ss_pred             cccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceeccccchHHHHHH
Confidence            446677777999999988755433222221  2455666666566777788888888888883  333334446777788


Q ss_pred             HHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhc--CCCChhhHHHHHHHHHHhhcCChHHHHHHHHC
Q 014945          247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL--RHPSPSVLIPALRTVGNIVTGDDMQTQCIINH  324 (415)
Q Consensus       247 ~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL--~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~  324 (415)
                      .++......++..-...+|+..+..+++.. ...++.+.|.++.++  .+++|.+...+-.++-.++.... . ..-+..
T Consensus       536 ~qlas~~s~evl~llmE~Ls~vv~~dpef~-as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~-~-~g~m~e  612 (1005)
T KOG2274|consen  536 LQLASKSSDEVLVLLMEALSSVVKLDPEFA-ASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAA-N-YGPMQE  612 (1005)
T ss_pred             HHHcccccHHHHHHHHHHHHHHhccChhhh-hhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH-h-hcchHH
Confidence            888888888999999999999998888764 356677888888776  35567676666666666654211 1 111223


Q ss_pred             CChHHHHHHhcCCCc----cchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHh-ccCCHHHHHHHHHHHHHHhCCC
Q 014945          325 QALPCLLDLLTQNYK----KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL-LNAEFEIKKEAAWAISNATSGG  399 (415)
Q Consensus       325 ~~l~~L~~ll~~~~~----~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l-~~~~~~v~~~a~~aL~nl~~~~  399 (415)
                      -.+|.++..+..+ .    ......+.-.|..+..+.|.-....+-.-++|.+.++. .++|..+-..+..||.-+...+
T Consensus       613 ~~iPslisil~~~-~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~  691 (1005)
T KOG2274|consen  613 RLIPSLISVLQLN-ADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVT  691 (1005)
T ss_pred             HHHHHHHHHHcCc-ccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcC
Confidence            5789999999877 5    56667777778778775443333333333688888874 5577888899999999998775


Q ss_pred             CHHHHHH
Q 014945          400 SNEQIKY  406 (415)
Q Consensus       400 ~~~~~~~  406 (415)
                      .++...+
T Consensus       692 ~eq~~t~  698 (1005)
T KOG2274|consen  692 LEQLLTW  698 (1005)
T ss_pred             HHHHHhh
Confidence            4443343

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.77  E-value=0.0033  Score=62.72  Aligned_cols=282  Identities=14%  Similarity=0.153  Sum_probs=164.0

Q ss_pred             CchHHHHHhhc------CC-CChHHHHHHHHHHHHHhCC--CchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 014945          114 GVVPRFIEFLS------RD-DFPQLQFEAAWALTNIASG--TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV  184 (415)
Q Consensus       114 g~i~~L~~ll~------~~-~~~~i~~~a~~~L~~l~~~--~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl  184 (415)
                      |+++.+++.+.      .+ +++.-+..|++.++++++-  .+.--...++.-+++.+.-.++++.--++..|+|.++.+
T Consensus       410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~  489 (1010)
T KOG1991|consen  410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQF  489 (1010)
T ss_pred             hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHH
Confidence            45666777776      22 2366778889988888841  111112223333455666677888888999999999999


Q ss_pred             cCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCC---chhhhhchHHHHHHhhcCCChhHHHHH
Q 014945          185 AGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP---LFEQTRPALPALERLIHSNDDEVLTDA  261 (415)
Q Consensus       185 ~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~---~~~~~~~~l~~l~~lL~~~d~~v~~~a  261 (415)
                      +...-  .+...-..++....+.|..+.+.+++..|+.+|..+..+.+..   ....+.+.+..++++.+.-+.+.....
T Consensus       490 ~~~df--~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~v  567 (1010)
T KOG1991|consen  490 SSIDF--KDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNV  567 (1010)
T ss_pred             HhccC--CChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHH
Confidence            84332  2222223366777777856888899999999999998876433   223345556666666666555555554


Q ss_pred             HHHH-HHhccCChHHHHHHHHcCcHHHHHHhcCC---CC---hhhHHHHHHHHHH---hhcCCh--HHHHHHHHCCChHH
Q 014945          262 CWAL-SYLSDGTNDKIQAVIEAGVCPRLVELLRH---PS---PSVLIPALRTVGN---IVTGDD--MQTQCIINHQALPC  329 (415)
Q Consensus       262 ~~~l-~~l~~~~~~~~~~~~~~~~i~~L~~lL~~---~~---~~v~~~a~~~l~n---l~~~~~--~~~~~~~~~~~l~~  329 (415)
                      +..+ +..+..-....-.+. ..+.....+++..   .+   ..=...|.++|..   +...-+  ...-.-++..++|.
T Consensus       568 me~iV~~fseElsPfA~eL~-q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~v  646 (1010)
T KOG1991|consen  568 MEKIVCKFSEELSPFAVELC-QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPV  646 (1010)
T ss_pred             HHHHHHHHHHhhchhHHHHH-HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            4433 222221111111111 1344555556652   11   1222333343333   332211  11222234466777


Q ss_pred             HHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCH
Q 014945          330 LLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSN  401 (415)
Q Consensus       330 L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~  401 (415)
                      +-.++++. -.++-++++-.+.+++...++.-..+.  |+++.+.+.+.....+--....-+|.|+.+.|.+
T Consensus       647 i~~iL~~~-i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~  715 (1010)
T KOG1991|consen  647 IGFILKND-ITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGIDYFTDMMPALHNYVTYGTP  715 (1010)
T ss_pred             HHHHHHHh-hHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCch
Confidence            77788777 778888888888877764433222222  2567777777776677777777788888776654

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.76  E-value=0.004  Score=59.29  Aligned_cols=268  Identities=15%  Similarity=0.117  Sum_probs=156.1

Q ss_pred             HHHHHhCCCchhhHHHHhCCChHHHHHhh----------CCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHH
Q 014945          138 ALTNIASGTSENTRVVIDHGAVPIFVRLL----------SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQ  207 (415)
Q Consensus       138 ~L~~l~~~~~~~~~~~~~~g~i~~L~~ll----------~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~  207 (415)
                      +|.-++.+ +...+.+....++..|.++-          ..++..+...|+.||+|+...++..|..+.+.|..+.++..
T Consensus         4 ~LRiLsRd-~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~   82 (446)
T PF10165_consen    4 TLRILSRD-PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCER   82 (446)
T ss_pred             HHHHHccC-cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHH
Confidence            34334443 44555555555566666654          33678899999999999999999999999999999999999


Q ss_pred             hccc----hhHhHHHHHHHHHHHhhhCCCCCch--hhhhchHHHHHHhh----cC-------------CChhHHHHHHHH
Q 014945          208 FNEH----AKLSMLRNATWTLSNFCRGKPQPLF--EQTRPALPALERLI----HS-------------NDDEVLTDACWA  264 (415)
Q Consensus       208 l~~~----~~~~~~~~a~~~l~~l~~~~~~~~~--~~~~~~l~~l~~lL----~~-------------~d~~v~~~a~~~  264 (415)
                      |...    .+.++.-..+..+.-++...+....  ....+++..+...|    ..             .+.....+++.+
T Consensus        83 Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKl  162 (446)
T PF10165_consen   83 LKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKL  162 (446)
T ss_pred             HHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHH
Confidence            9543    1455555555555555544322221  11123444444333    11             245678889999


Q ss_pred             HHHhccCChHHHHHHHHcCcHHHHHHhcC---------CCChhhHHHHHHHHHHhhcCChHH-------HHH----HHHC
Q 014945          265 LSYLSDGTNDKIQAVIEAGVCPRLVELLR---------HPSPSVLIPALRTVGNIVTGDDMQ-------TQC----IINH  324 (415)
Q Consensus       265 l~~l~~~~~~~~~~~~~~~~i~~L~~lL~---------~~~~~v~~~a~~~l~nl~~~~~~~-------~~~----~~~~  324 (415)
                      +.|++...+.... -...+.++.++.++.         .+.......++.+|.|+--.....       ...    ..+.
T Consensus       163 lFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~  241 (446)
T PF10165_consen  163 LFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNM  241 (446)
T ss_pred             HHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCCh
Confidence            9999765443221 011223333333321         112345666777777763211111       000    0112


Q ss_pred             CChHHHHHHhcCC----Ccc---chHHHHHHHHHHHhcCCHHHHHHHHH----------------cCCHHHHHHHhccCC
Q 014945          325 QALPCLLDLLTQN----YKK---SIKKEACWTISNITAGNVNQIQAIIE----------------AGIIGPLVNLLLNAE  381 (415)
Q Consensus       325 ~~l~~L~~ll~~~----~~~---~v~~~a~~~l~nl~~~~~~~~~~l~~----------------~~~i~~L~~~l~~~~  381 (415)
                      ..+..|+.+|...    ...   ..-.-...+|.+++..+...++++..                ..+-..|++++.+..
T Consensus       242 ~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~  321 (446)
T PF10165_consen  242 DVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPD  321 (446)
T ss_pred             HHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCC
Confidence            3455566655322    111   23344556677777766555555533                234678999999988


Q ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014945          382 FEIKKEAAWAISNATSGGSNEQIKYK  407 (415)
Q Consensus       382 ~~v~~~a~~aL~nl~~~~~~~~~~~l  407 (415)
                      +.++..+...|..++.......++|.
T Consensus       322 ~~~k~~vaellf~Lc~~d~~~~v~~~  347 (446)
T PF10165_consen  322 PQLKDAVAELLFVLCKEDASRFVKYV  347 (446)
T ss_pred             chHHHHHHHHHHHHHhhhHHHHHHHc
Confidence            99999999999999866544544443

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.74  E-value=9e-05  Score=44.51  Aligned_cols=39  Identities=38%  Similarity=0.753  Sum_probs=35.8

Q ss_pred             chhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 014945          147 SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA  185 (415)
Q Consensus       147 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~  185 (415)
                      ++.+..+.+.|+++.|+.++.++++.++..++|+|+||+
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            457788889999999999999999999999999999997

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=97.74  E-value=0.0033  Score=62.73  Aligned_cols=149  Identities=15%  Similarity=0.095  Sum_probs=87.8

Q ss_pred             ChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHH
Q 014945          200 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAV  279 (415)
Q Consensus       200 ~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~  279 (415)
                      +++.+-.+. .+.+..++...+..+..+..-.+  ....+...+|.+...+++.++.|+.+..+.+..+-...+..-...
T Consensus       399 ilp~~~~lv-~d~~~~vr~a~a~~~~~~~p~~~--k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~  475 (759)
T KOG0211|consen  399 ILPEVQVLV-LDNALHVRSALASVITGLSPILP--KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGIST  475 (759)
T ss_pred             hhHHHHHHH-hcccchHHHHHhccccccCccCC--cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchh
Confidence            344444444 55566666666655555543322  233446778888889999999999999987766543333221223


Q ss_pred             HHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc
Q 014945          280 IEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA  355 (415)
Q Consensus       280 ~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~  355 (415)
                      +....++.+..+-....+.++...++.+-.++....   ..+++...-+.+...+.+. ...+++.|+..+..++.
T Consensus       476 ~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~-v~~Ir~~aa~~l~~l~~  547 (759)
T KOG0211|consen  476 VSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDH-VYSIREAAARNLPALVE  547 (759)
T ss_pred             hhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhh-HHHHHHHHHHHhHHHHH
Confidence            444566777777666678888888888777775332   2233333334444444444 45566666665555553

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=97.72  E-value=0.0044  Score=62.50  Aligned_cols=260  Identities=15%  Similarity=0.144  Sum_probs=159.9

Q ss_pred             CchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCCchhH
Q 014945          114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCR  192 (415)
Q Consensus       114 g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~nl~~~~~~~~  192 (415)
                      +++..|+..+++.+ ..++..|+..++.++...|..   +.+ .++...+.++.- +++..-..++-+|+.++...--.-
T Consensus       341 ~vie~Lls~l~d~d-t~VrWSaAKg~grvt~rlp~~---Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp  415 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTD-TVVRWSAAKGLGRVTSRLPPE---LAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP  415 (1133)
T ss_pred             HHHHHHHHhccCCc-chhhHHHHHHHHHHHccCcHH---HHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence            57888888899988 899999999999999876622   221 345566665543 334455588999999986543222


Q ss_pred             HHHHhcCChHHHHHHhcc-------chhHhHHHHHHHHHHHhhhCC-CCCchhhhhchHHHHH-HhhcCCChhHHHHHHH
Q 014945          193 DLVLSNGALMPLLAQFNE-------HAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALE-RLIHSNDDEVLTDACW  263 (415)
Q Consensus       193 ~~~~~~g~i~~L~~~l~~-------~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~l~-~lL~~~d~~v~~~a~~  263 (415)
                      ..+..  +++.++.-|..       .....++..||.+++.+++.. +..-......+.+.|+ ..+.+.+-.+|..|..
T Consensus       416 s~l~d--VvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsA  493 (1133)
T KOG1943|consen  416 SLLED--VVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASA  493 (1133)
T ss_pred             HHHHH--HHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHH
Confidence            22222  45555555421       224568888998888888876 3333334444555433 4456677788888888


Q ss_pred             HHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHH-hcCCCccch
Q 014945          264 ALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL-LTQNYKKSI  342 (415)
Q Consensus       264 ~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~l-l~~~~~~~v  342 (415)
                      ++........+.-     .|+  .|+...+.-....+..+...+..-....+.....+++     .++.. +.|= +..+
T Consensus       494 AlqE~VGR~~n~p-----~Gi--~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~-----~L~t~Kv~HW-d~~i  560 (1133)
T KOG1943|consen  494 ALQENVGRQGNFP-----HGI--SLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFN-----HLLTKKVCHW-DVKI  560 (1133)
T ss_pred             HHHHHhccCCCCC-----Cch--hhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHH-----HHHhcccccc-cHHH
Confidence            8876653322110     011  1222222223345556655565555555555554444     22222 4555 7889


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhC
Q 014945          343 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  397 (415)
Q Consensus       343 ~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~  397 (415)
                      |..++|+|.++....|+    ....+.++.+++.....+...+.-+..+.+.++.
T Consensus       561 relaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~  611 (1133)
T KOG1943|consen  561 RELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG  611 (1133)
T ss_pred             HHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence            99999999998765444    3345678888888888888877666666665553

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.70  E-value=0.0091  Score=60.95  Aligned_cols=230  Identities=11%  Similarity=0.080  Sum_probs=150.7

Q ss_pred             CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhc---cchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHH
Q 014945          169 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPA  245 (415)
Q Consensus       169 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~---~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~  245 (415)
                      .+..+|..+...|..++...+ +.....+  .+..+.+.+.   ++.....+...+.+|..|....+......+...+|-
T Consensus       666 ~~~~vQkK~yrlL~~l~~~~s-~~~~~~q--~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~E  742 (1176)
T KOG1248|consen  666 SSTKVQKKAYRLLEELSSSPS-GEGLVEQ--RIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPE  742 (1176)
T ss_pred             ccHHHHHHHHHHHHHHhcCCc-hhhHHHH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            478899999999999987632 2222211  2333333332   445667888889999999887664444555566665


Q ss_pred             HHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHc----------CcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh
Q 014945          246 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA----------GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD  315 (415)
Q Consensus       246 l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~----------~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~  315 (415)
                      ++-.+++.|...+..+..+|..++.     ++...+.          .+++.+...+..+...+....+.+++.+.....
T Consensus       743 vIL~~Ke~n~~aR~~Af~lL~~i~~-----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~  817 (1176)
T KOG1248|consen  743 VILSLKEVNVKARRNAFALLVFIGA-----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFK  817 (1176)
T ss_pred             HHHhcccccHHHHhhHHHHHHHHHH-----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHh
Confidence            5555577888899999888888872     1111111          233444444444444444444666777665433


Q ss_pred             HHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHH
Q 014945          316 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA  395 (415)
Q Consensus       316 ~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl  395 (415)
                      .......-.++++.+.-+|.+. ++.+++.|...+.-++...|+..-.-....+++.+..+.++..-.++..+-..|..+
T Consensus       818 ~~ld~~~l~~li~~V~~~L~s~-sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekL  896 (1176)
T KOG1248|consen  818 NILDDETLEKLISMVCLYLASN-SREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKL  896 (1176)
T ss_pred             ccccHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            2222222335677777888888 999999999999999986554332222233899999988888899999999999999


Q ss_pred             hCCCCHHHHHHH
Q 014945          396 TSGGSNEQIKYK  407 (415)
Q Consensus       396 ~~~~~~~~~~~l  407 (415)
                      ......+.++.+
T Consensus       897 irkfg~~eLe~~  908 (1176)
T KOG1248|consen  897 IRKFGAEELESF  908 (1176)
T ss_pred             HHHhCHHHHHhh
Confidence            987777766554

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.64  E-value=0.00045  Score=50.20  Aligned_cols=68  Identities=16%  Similarity=0.221  Sum_probs=57.4

Q ss_pred             hHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcC-CCccchHHHHHHHHHHHhcCCHHHHHHHHH
Q 014945          299 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAGNVNQIQAIIE  366 (415)
Q Consensus       299 v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~  366 (415)
                      ++...+++|||++..++.....+.+.|++|.++....- ..+|.+|+.|.|++.|++.+++++...+.+
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            45678899999999999888999999999999986632 238899999999999999999987665543

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.62  E-value=0.0059  Score=55.05  Aligned_cols=191  Identities=17%  Similarity=0.214  Sum_probs=124.8

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHH---hcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCC--C
Q 014945           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI---QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASG--T  146 (415)
Q Consensus        72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~---~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~--~  146 (415)
                      .+...+..+.......+..++..+.+++...   ....++   ...++..+.+.++.+. .+-+..|+.+++-++-.  .
T Consensus        44 ~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~---~~~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~ltlg~  119 (309)
T PF05004_consen   44 KLKEAIDLLTEKSSSTREAALEALIRALSSR---YLPDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLALTLGA  119 (309)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhhhcCC
Confidence            3677788888777899999999999988643   222333   2346778888888887 56777787877766543  2


Q ss_pred             chhhHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhcC---CCchhHHHHHhcCChHHHHH--Hhcc---------
Q 014945          147 SENTRVVIDHGAVPIFVRLLSSP--TDDVREQAVWALGNVAG---DSPKCRDLVLSNGALMPLLA--QFNE---------  210 (415)
Q Consensus       147 ~~~~~~~~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~nl~~---~~~~~~~~~~~~g~i~~L~~--~l~~---------  210 (415)
                      .+....+++ ...|.|.+.+.+.  ...++..++.+|+-++.   ..+......++  .+..+..  ....         
T Consensus       120 g~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~  196 (309)
T PF05004_consen  120 GEDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAA  196 (309)
T ss_pred             CccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccC
Confidence            234444444 4678888888764  45677777777777652   22221111111  2332211  1211         


Q ss_pred             chhHhHHHHHHHHHHHhhhCCCCCc-hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 014945          211 HAKLSMLRNATWTLSNFCRGKPQPL-FEQTRPALPALERLIHSNDDEVLTDACWALSYLS  269 (415)
Q Consensus       211 ~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~  269 (415)
                      .+++.+...|+.+++-|...-+... .......+|.|..+|.++|.+|+..|-.+|.-+.
T Consensus       197 ~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~  256 (309)
T PF05004_consen  197 EDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY  256 (309)
T ss_pred             CCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            1235688888888888876654322 2344678999999999999999999999888764

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=97.59  E-value=0.0028  Score=59.50  Aligned_cols=134  Identities=16%  Similarity=0.214  Sum_probs=99.8

Q ss_pred             HHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHh-cCCCChhhHHHHHHHHHHhhcCChHHHHHHHH
Q 014945          245 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL-LRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN  323 (415)
Q Consensus       245 ~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~l-L~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~  323 (415)
                      .+-+++.+.|+-.+.....+++.--.+..       +.|++..++.. .++.+.+|+..|..+||-+|..+.        
T Consensus       520 ~I~ell~d~ds~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~--------  584 (926)
T COG5116         520 YINELLYDKDSILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR--------  584 (926)
T ss_pred             HHHHHhcCchHHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCc--------
Confidence            56677788888888877665543222211       13567777777 677889999999999999988654        


Q ss_pred             CCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCH
Q 014945          324 HQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSN  401 (415)
Q Consensus       324 ~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~  401 (415)
                       ..++..+++|..+.++.||...+.+|+-.|+++..+.       .+..|-.++.+...-||+.|+.+++-+...+++
T Consensus       585 -~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~  654 (926)
T COG5116         585 -DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNP  654 (926)
T ss_pred             -chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCc
Confidence             4567788888777799999999999999998755543       345555667777888999999999998876654

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.58  E-value=0.037  Score=54.02  Aligned_cols=248  Identities=17%  Similarity=0.111  Sum_probs=150.4

Q ss_pred             HhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCC
Q 014945          121 EFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGA  200 (415)
Q Consensus       121 ~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~  200 (415)
                      +=|++++ +-+|-.+++.|+.+=.  ++-.+     ..+|.+...|.+.+.-+|..|+.++..|-.....   .+-  .+
T Consensus       106 kDLQHPN-EyiRG~TLRFLckLkE--~ELle-----pl~p~IracleHrhsYVRrNAilaifsIyk~~~~---L~p--Da  172 (948)
T KOG1058|consen  106 KDLQHPN-EYIRGSTLRFLCKLKE--PELLE-----PLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEH---LIP--DA  172 (948)
T ss_pred             hhccCch-HhhcchhhhhhhhcCc--HHHhh-----hhHHHHHHHHhCcchhhhhhhheeehhHHhhhhh---hcC--Ch
Confidence            3455565 6677677776666544  32222     3577778888888888888888888877544221   111  13


Q ss_pred             hHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHh---hcCCChhHHHHHHHHHHHhccCChHHHH
Q 014945          201 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERL---IHSNDDEVLTDACWALSYLSDGTNDKIQ  277 (415)
Q Consensus       201 i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~l---L~~~d~~v~~~a~~~l~~l~~~~~~~~~  277 (415)
                      -+.+-..|....++...++|...|...-..          .++..+...   +.+-++..+......|...+...+... 
T Consensus       173 peLi~~fL~~e~DpsCkRNAFi~L~~~D~E----------rAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~-  241 (948)
T KOG1058|consen  173 PELIESFLLTEQDPSCKRNAFLMLFTTDPE----------RALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEK-  241 (948)
T ss_pred             HHHHHHHHHhccCchhHHHHHHHHHhcCHH----------HHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHh-
Confidence            333444554666777788777665544321          122222222   223345555566666666665444332 


Q ss_pred             HHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCC
Q 014945          278 AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN  357 (415)
Q Consensus       278 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~  357 (415)
                          ...+..+..+|.+.++.++-.|..+|-++...+. ...     -....++.++....+-.++--..--|..+.+.+
T Consensus       242 ----~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~-alk-----~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~  311 (948)
T KOG1058|consen  242 ----ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPT-ALK-----AAASTYIDLLVKESDNNVKLIVLDRLSELKALH  311 (948)
T ss_pred             ----hHHHHHHHHHHhcCCchhhhhhcceEEEccCCHH-HHH-----HHHHHHHHHHHhccCcchhhhhHHHHHHHhhhh
Confidence                2456788889988888888888888887776433 222     123456666544435566665555566655433


Q ss_pred             HHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014945          358 VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYK  407 (415)
Q Consensus       358 ~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l  407 (415)
                      ....     .|++-.++.+|..+|.++++.++.....++..-+-+++-.+
T Consensus       312 ~~il-----~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~  356 (948)
T KOG1058|consen  312 EKIL-----QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQF  356 (948)
T ss_pred             HHHH-----HHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHH
Confidence            3322     23566778888999999999999999999877666655433

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.57  E-value=0.0045  Score=60.26  Aligned_cols=260  Identities=16%  Similarity=0.149  Sum_probs=139.4

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHH-
Q 014945           74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV-  152 (415)
Q Consensus        74 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~-  152 (415)
                      +-+=+++.+....+...|+.++..+..    ...+.+..  .+..|--+++++. ..+|..|.++|..+|...|+.... 
T Consensus       248 ~fl~s~l~~K~emV~~EaArai~~l~~----~~~r~l~p--avs~Lq~flssp~-~~lRfaAvRtLnkvAm~~P~~v~~c  320 (865)
T KOG1078|consen  248 PFLESCLRHKSEMVIYEAARAIVSLPN----TNSRELAP--AVSVLQLFLSSPK-VALRFAAVRTLNKVAMKHPQAVTVC  320 (865)
T ss_pred             HHHHHHHhchhHHHHHHHHHHHhhccc----cCHhhcch--HHHHHHHHhcCcH-HHHHHHHHHHHHHHHHhCCcccccc
Confidence            444456667888899999999988743    33333333  5778888889988 899999999999999765543211 


Q ss_pred             ------HHh-C---CChHHHHHhhCCCCH----HHHHHHHHHHHHhcCCCch-----hHHHH-----HhcCChHHHHHHh
Q 014945          153 ------VID-H---GAVPIFVRLLSSPTD----DVREQAVWALGNVAGDSPK-----CRDLV-----LSNGALMPLLAQF  208 (415)
Q Consensus       153 ------~~~-~---g~i~~L~~ll~~~~~----~v~~~a~~~L~nl~~~~~~-----~~~~~-----~~~g~i~~L~~~l  208 (415)
                            ++. .   -...++..+|....+    .+..+......+++.+...     .+...     ...+.+..|.++|
T Consensus       321 N~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~L  400 (865)
T KOG1078|consen  321 NLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNML  400 (865)
T ss_pred             chhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence                  111 0   012233333433222    2333333333333322110     00000     1112233444444


Q ss_pred             ccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHH
Q 014945          209 NEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL  288 (415)
Q Consensus       209 ~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L  288 (415)
                      .+....+..+....++..+....+.....    .+..|..++.+.  +...-+.+.+..+....+..   ...+..+..+
T Consensus       401 r~eGg~e~K~aivd~Ii~iie~~pdsKe~----~L~~LCefIEDc--e~~~i~~rILhlLG~EgP~a---~~Pskyir~i  471 (865)
T KOG1078|consen  401 REEGGFEFKRAIVDAIIDIIEENPDSKER----GLEHLCEFIEDC--EFTQIAVRILHLLGKEGPKA---PNPSKYIRFI  471 (865)
T ss_pred             HhccCchHHHHHHHHHHHHHHhCcchhhH----HHHHHHHHHHhc--cchHHHHHHHHHHhccCCCC---CCcchhhHHH
Confidence            44444455555555555555543332222    222333333221  12223333333333221100   0112234445


Q ss_pred             HHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc
Q 014945          289 VELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA  355 (415)
Q Consensus       289 ~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~  355 (415)
                      .....-.+..++..|..++.++..+.+....     .+...+..++.+. +..+|..|.+.+.++-.
T Consensus       472 yNRviLEn~ivRaaAv~alaKfg~~~~~l~~-----sI~vllkRc~~D~-DdevRdrAtf~l~~l~~  532 (865)
T KOG1078|consen  472 YNRVILENAIVRAAAVSALAKFGAQDVVLLP-----SILVLLKRCLNDS-DDEVRDRATFYLKNLEE  532 (865)
T ss_pred             hhhhhhhhhhhHHHHHHHHHHHhcCCCCccc-----cHHHHHHHHhcCc-hHHHHHHHHHHHHHhhh
Confidence            5555456778999999999999965553222     4455677788888 99999999999998873

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.54  E-value=0.016  Score=59.23  Aligned_cols=243  Identities=12%  Similarity=0.100  Sum_probs=154.4

Q ss_pred             HHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHh--CCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCc-hhHHHH
Q 014945          119 FIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVID--HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP-KCRDLV  195 (415)
Q Consensus       119 L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~-~~~~~~  195 (415)
                      +.....+.++..+|..+..+|..++.. +.......+  ..+...|..-+++.....+...+.+|..|....+ +..+.+
T Consensus       658 v~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i  736 (1176)
T KOG1248|consen  658 VDPEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI  736 (1176)
T ss_pred             hhHHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            334444443389999999999999986 332222211  1234445555555666777788888888775554 222332


Q ss_pred             HhcCChHHHHHHhccchhHhHHHHHHHHHHHhh--hCC----CCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 014945          196 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC--RGK----PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS  269 (415)
Q Consensus       196 ~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~--~~~----~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~  269 (415)
                      ..  .++.++-.+ +..+...++++..+|..++  ...    ..+....+..+++.|...+-.+...+....+-++..+.
T Consensus       737 ~k--~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il  813 (1176)
T KOG1248|consen  737 PK--LIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHIL  813 (1176)
T ss_pred             HH--HHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence            22  344444444 6678888888888888887  221    22235566777777776655444444444355565555


Q ss_pred             cCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHH
Q 014945          270 DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT  349 (415)
Q Consensus       270 ~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~  349 (415)
                      ....+....-.-.++++.+..+|.+.++.++..|++.+..++...++..-......+++.+..++++. .-.+|..+-..
T Consensus       814 ~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr~L  892 (1176)
T KOG1248|consen  814 QEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH-KIKVRKKVRLL  892 (1176)
T ss_pred             HHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHHHH
Confidence            33222222222235677777888999999999999999999988775444333445788888888877 78888888888


Q ss_pred             HHHHhc-CCHHHHHHHHH
Q 014945          350 ISNITA-GNVNQIQAIIE  366 (415)
Q Consensus       350 l~nl~~-~~~~~~~~l~~  366 (415)
                      +-.++. ...+.++.+..
T Consensus       893 lekLirkfg~~eLe~~~p  910 (1176)
T KOG1248|consen  893 LEKLIRKFGAEELESFLP  910 (1176)
T ss_pred             HHHHHHHhCHHHHHhhCH
Confidence            888886 34555666655

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.53  E-value=0.007  Score=49.97  Aligned_cols=93  Identities=24%  Similarity=0.295  Sum_probs=75.5

Q ss_pred             hHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhc
Q 014945          213 KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL  292 (415)
Q Consensus       213 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL  292 (415)
                      ++.++.+++-+++-|+...|    ..+.+.+|.+...|.++++.||..|+.++.+|...+.-...    ..++..++..+
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~----~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k----~~l~~~~l~~l   72 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYP----NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK----GQLFSRILKLL   72 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCc----HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh----hhhhHHHHHHH
Confidence            46788899999999987654    34467789999999999999999999999999865432211    23347888888


Q ss_pred             CCCChhhHHHHHHHHHHhhcC
Q 014945          293 RHPSPSVLIPALRTVGNIVTG  313 (415)
Q Consensus       293 ~~~~~~v~~~a~~~l~nl~~~  313 (415)
                      .++++.++..|..++..+...
T Consensus        73 ~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   73 VDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             cCCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999999876

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.53  E-value=0.028  Score=56.47  Aligned_cols=320  Identities=15%  Similarity=0.118  Sum_probs=167.9

Q ss_pred             CHHHHHHHHHHHHHHhccC-CCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHH
Q 014945           84 DRNIQLDATTQFRKLLSIE-RSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIF  162 (415)
Q Consensus        84 ~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L  162 (415)
                      ++.....|+..+..+.+.- +..+.+...+.=+++.+...++++- --+|..|+|+++.+++.+-.....+.  .++...
T Consensus       431 ~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~-g~Lrarac~vl~~~~~~df~d~~~l~--~ale~t  507 (1010)
T KOG1991|consen  431 NPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPY-GYLRARACWVLSQFSSIDFKDPNNLS--EALELT  507 (1010)
T ss_pred             ChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCch-hHHHHHHHHHHHHHHhccCCChHHHH--HHHHHH
Confidence            3444555666666554321 2344444455556677777888877 78999999999999963322222222  356666


Q ss_pred             HHhhC-CCCHHHHHHHHHHHHHhcCCCchhHHHHHh--cCChHHHHHHhccch----------------------hHhHH
Q 014945          163 VRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLS--NGALMPLLAQFNEHA----------------------KLSML  217 (415)
Q Consensus       163 ~~ll~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~--~g~i~~L~~~l~~~~----------------------~~~~~  217 (415)
                      .+.|. +.+-.|+-.|+-+|..+..+.+.....+-.  .+.++.|+.+.+...                      -.++.
T Consensus       508 ~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~  587 (1010)
T KOG1991|consen  508 HNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELC  587 (1010)
T ss_pred             HHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHH
Confidence            66666 667788999999999988776643222211  012223333321111                      11333


Q ss_pred             HHHHHHHHHhhhC----CC--CCchhhhhchHHHHHHhhcC--CChhH-----------------------HHHHHHHHH
Q 014945          218 RNATWTLSNFCRG----KP--QPLFEQTRPALPALERLIHS--NDDEV-----------------------LTDACWALS  266 (415)
Q Consensus       218 ~~a~~~l~~l~~~----~~--~~~~~~~~~~l~~l~~lL~~--~d~~v-----------------------~~~a~~~l~  266 (415)
                      .+...++..+...    .+  ........|++..+..+|.+  +.+++                       -+.++..+.
T Consensus       588 q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~  667 (1010)
T KOG1991|consen  588 QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVS  667 (1010)
T ss_pred             HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence            3444444444442    11  11222335666555554432  12222                       222333332


Q ss_pred             HhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCC-----ChHHHHHHhcCC-Ccc
Q 014945          267 YLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQ-----ALPCLLDLLTQN-YKK  340 (415)
Q Consensus       267 ~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~-----~l~~L~~ll~~~-~~~  340 (415)
                      +++....+..-.+  -|+++.+.+.+....-.......-+|.|+.+....   .+...+     ++..+..++.+. ...
T Consensus       668 ~~t~~~~~Isp~m--W~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~---~~~s~~~y~~il~~i~~~~l~~e~~~D  742 (1010)
T KOG1991|consen  668 SLTFLSKEISPIM--WGLLELILEVFQDDGIDYFTDMMPALHNYVTYGTP---SLLSNPDYLQILLEIIKKVLTSENGED  742 (1010)
T ss_pred             hhhhhhcccCHHH--HHHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCch---hhhccchHHHHHHHHHHHHHcCCCCch
Confidence            2222111110000  14556666666666666667777788887763321   122221     234445555542 133


Q ss_pred             chHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc--CCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhCCC
Q 014945          341 SIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN--AEFEIKKEAAWAISNATSGGSNEQIKYKFFYVSRTC  415 (415)
Q Consensus       341 ~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~~g~  415 (415)
                      .=...||..+.-+.-.....+++.+.. .+...+..+..  .+...+..++..+.|.....+...+..|   -+.|+
T Consensus       743 ~d~~~a~kLle~iiL~~kg~~dq~ipl-f~~~a~~~l~~~~e~s~~~~~~leVvinalyynP~ltL~iL---e~~~~  815 (1010)
T KOG1991|consen  743 SDCESACKLLEVIILNCKGLLDQYIPL-FLELALSRLTREVETSELRVMLLEVVINALYYNPKLTLGIL---ENQGF  815 (1010)
T ss_pred             HHHHHHHHHHHHHHHHhcCcHhhHhHH-HHHHHHHHHhccccchHHHHHHHHHHHHHHHcCcHHHHHHH---HHcCC
Confidence            344557777666654322234443332 33333344444  5667888899999888888888888888   66663

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=97.51  E-value=0.0008  Score=66.38  Aligned_cols=188  Identities=19%  Similarity=0.163  Sum_probs=129.9

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHH--------HHh----cCChHHHHHHhccchhHhHHHHHHHHHHH
Q 014945          159 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL--------VLS----NGALMPLLAQFNEHAKLSMLRNATWTLSN  226 (415)
Q Consensus       159 i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~--------~~~----~g~i~~L~~~l~~~~~~~~~~~a~~~l~~  226 (415)
                      ...++.+|++  +++-..+..++.-+..|++.++..        +.+    ..++|.+++.+ .......+.+...+|++
T Consensus       817 a~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~-~t~~~~~K~~yl~~Lsh  893 (1030)
T KOG1967|consen  817 AEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKF-ETAPGSQKHNYLEALSH  893 (1030)
T ss_pred             HHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHh-ccCCccchhHHHHHHHH
Confidence            4456667765  344456667777776665533221        122    23577777777 35566677888888888


Q ss_pred             hhhCCCCCc-hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCC---hhhHHH
Q 014945          227 FCRGKPQPL-FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS---PSVLIP  302 (415)
Q Consensus       227 l~~~~~~~~-~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~---~~v~~~  302 (415)
                      +..+-|... ......++|.|++.|.-+|..++..++.++.-+....+.....-++ -+++.++.+-.+++   ..+|..
T Consensus       894 Vl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR~~  972 (1030)
T KOG1967|consen  894 VLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVRED  972 (1030)
T ss_pred             HHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHh-HHHHHHHhcCCCCCcchhHHHHH
Confidence            887654432 3345678899999999999999999999998887655544332332 36777777766555   579999


Q ss_pred             HHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHH
Q 014945          303 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS  351 (415)
Q Consensus       303 a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~  351 (415)
                      |+.+|+.+....|...-......++..+.+.|.++ ..-||++|..+=.
T Consensus       973 ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen  973 ALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDTRQ 1020 (1030)
T ss_pred             HHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHHhh
Confidence            99999999985553333344446788899999998 8899999987643

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=97.50  E-value=0.032  Score=53.72  Aligned_cols=254  Identities=12%  Similarity=0.096  Sum_probs=136.6

Q ss_pred             HHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHH
Q 014945          117 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVL  196 (415)
Q Consensus       117 ~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~  196 (415)
                      ..++...+. + ...+..|+..+......-|+..+.     ++..++.+..+++..||.+|+..|..+|.+.++....  
T Consensus        26 ~~il~~~kg-~-~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k--   96 (556)
T PF05918_consen   26 KEILDGVKG-S-PKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK--   96 (556)
T ss_dssp             HHHHHGGGS---HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH--
T ss_pred             HHHHHHccC-C-HHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH--
Confidence            344555553 4 789999999999999887777655     5778999999999999999999999999998765444  


Q ss_pred             hcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhc---CCChhHHHHHHHHHHH-hccCC
Q 014945          197 SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH---SNDDEVLTDACWALSY-LSDGT  272 (415)
Q Consensus       197 ~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~---~~d~~v~~~a~~~l~~-l~~~~  272 (415)
                         +...|+++| ...++.-...+-++|..+...++       .+.+..+...+.   +.|+.+++.++..|.. +-.-.
T Consensus        97 ---vaDvL~QlL-~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~  165 (556)
T PF05918_consen   97 ---VADVLVQLL-QTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLK  165 (556)
T ss_dssp             ---HHHHHHHHT-T---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-
T ss_pred             ---HHHHHHHHH-hcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCc
Confidence               456788888 56666666666677777765432       344444444443   5678899998877743 22111


Q ss_pred             hHHHH--HHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhc----CChHHHHHHHHCCChHHHHHHh------cCCCcc
Q 014945          273 NDKIQ--AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT----GDDMQTQCIINHQALPCLLDLL------TQNYKK  340 (415)
Q Consensus       273 ~~~~~--~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~----~~~~~~~~~~~~~~l~~L~~ll------~~~~~~  340 (415)
                      .+...  .=.+.-++..+...|.+-...--...+.+|..+-.    .+....+.+     ++.+....      ... ++
T Consensus       166 ~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeL-----v~ii~eQa~Ld~~f~~s-D~  239 (556)
T PF05918_consen  166 PELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQEL-----VDIIEEQADLDQPFDPS-DP  239 (556)
T ss_dssp             TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHH-----HHHHHHHHTTTS---SS-SH
T ss_pred             HHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHH-----HHHHHHHhccCCCCCCc-CH
Confidence            11111  11122245667777765444444445555655554    223333433     33344332      112 33


Q ss_pred             chHHHHHHHHHH----Hhc--CCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCH
Q 014945          341 SIKKEACWTISN----ITA--GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSN  401 (415)
Q Consensus       341 ~v~~~a~~~l~n----l~~--~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~  401 (415)
                      ..-.....++..    +..  .+.....++++. ++|.+-++    +.+.+..-+.++..++..+..
T Consensus       240 e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~k-vlP~l~~l----~e~~kl~lLk~lAE~s~~~~~  301 (556)
T PF05918_consen  240 ESIDRLISCLRQALPFFSRGVSSSKFVNYMCEK-VLPKLSDL----PEDRKLDLLKLLAELSPFCGA  301 (556)
T ss_dssp             HHHHHHHHHHHHHGGG-BTTB--HHHHHHHHHH-TCCCTT---------HHHHHHHHHHHHHTT---
T ss_pred             HHHHHHHHHHHHhhHHhcCCCChHHHHHHHHHH-hcCChhhC----ChHHHHHHHHHHHHHcCCCCc
Confidence            333333333222    222  244445555554 77766555    456677788888888876653

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.49  E-value=0.019  Score=55.94  Aligned_cols=149  Identities=14%  Similarity=0.125  Sum_probs=93.5

Q ss_pred             hhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh-HHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHH
Q 014945          239 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ  317 (415)
Q Consensus       239 ~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~  317 (415)
                      ..+++--++.+|.++|-+++..++.....|+.... +.+-.++...+...--. =...+...|..-+.++...+...++.
T Consensus       315 l~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~-e~d~~~~yRqlLiktih~cav~Fp~~  393 (948)
T KOG1058|consen  315 LQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE-ESDDNGKYRQLLIKTIHACAVKFPEV  393 (948)
T ss_pred             HHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc-ccccchHHHHHHHHHHHHHhhcChHH
Confidence            34555566778889999999999988877764322 22211222111111100 01234567888889999888877765


Q ss_pred             HHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHHHHHHHHHh
Q 014945          318 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNAT  396 (415)
Q Consensus       318 ~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~-~~~~v~~~a~~aL~nl~  396 (415)
                      ..     .+++.+++++.+. ++.........+.......|.-+..     ++..|++-+.. ...++..-|+|.++..+
T Consensus       394 aa-----tvV~~ll~fisD~-N~~aas~vl~FvrE~iek~p~Lr~~-----ii~~l~~~~~~irS~ki~rgalwi~GeYc  462 (948)
T KOG1058|consen  394 AA-----TVVSLLLDFISDS-NEAAASDVLMFVREAIEKFPNLRAS-----IIEKLLETFPQIRSSKICRGALWILGEYC  462 (948)
T ss_pred             HH-----HHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhCchHHHH-----HHHHHHHhhhhhcccccchhHHHHHHHHH
Confidence            44     5688999999888 7765555555555555444443332     45555555543 56778889999999998


Q ss_pred             CCC
Q 014945          397 SGG  399 (415)
Q Consensus       397 ~~~  399 (415)
                      ...
T Consensus       463 e~~  465 (948)
T KOG1058|consen  463 EGL  465 (948)
T ss_pred             hhh
Confidence            763

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.46  E-value=0.0065  Score=55.08  Aligned_cols=202  Identities=12%  Similarity=0.100  Sum_probs=139.5

Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchh-----HHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHH
Q 014945          152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC-----RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN  226 (415)
Q Consensus       152 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~-----~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~  226 (415)
                      .+...+.+..|+..|..-+-+.+..+....+++.......     .+.+.. ..-..+..++....++++.-.+...|..
T Consensus        71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~-~~peil~~L~~gy~~~dial~~g~mlRe  149 (335)
T PF08569_consen   71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLER-HRPEILDILLRGYENPDIALNCGDMLRE  149 (335)
T ss_dssp             HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHh-CCHHHHHHHHHHhcCccccchHHHHHHH
Confidence            3445578888999998888889999999999987654332     223332 1123333333333466677777777777


Q ss_pred             hhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHc---CcHHHHHHhcCCCChhhHHHH
Q 014945          227 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLRHPSPSVLIPA  303 (415)
Q Consensus       227 l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~i~~L~~lL~~~~~~v~~~a  303 (415)
                      .++...-.......+.+-.+...++.++-+|..+|..++..+..........++..   .++.....+|.+++--++..+
T Consensus       150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs  229 (335)
T PF08569_consen  150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS  229 (335)
T ss_dssp             HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred             HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence            77664333333345566677888889999999999999999776665555555555   456788888999999999999


Q ss_pred             HHHHHHhhcCChHH---HHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc
Q 014945          304 LRTVGNIVTGDDMQ---TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA  355 (415)
Q Consensus       304 ~~~l~nl~~~~~~~---~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~  355 (415)
                      +..||.+.......   ...+-+..-+..++.+|.+. +..++-+|..++--+++
T Consensus       230 lkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVA  283 (335)
T PF08569_consen  230 LKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVA  283 (335)
T ss_dssp             HHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHh
Confidence            99999999755422   23333446688999999999 99999999999998887

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=97.44  E-value=0.0033  Score=57.84  Aligned_cols=267  Identities=15%  Similarity=0.099  Sum_probs=145.5

Q ss_pred             hHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhc-----CCCchhHHHHHhcCChHH
Q 014945          129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA-----GDSPKCRDLVLSNGALMP  203 (415)
Q Consensus       129 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~-----~~~~~~~~~~~~~g~i~~  203 (415)
                      ..++.+++.+|..++..-.-.+..+++  ....+...+....+.+...+..++..+-     .+.|+.-+.-...|.+-.
T Consensus       269 s~~rle~~qvl~~~a~~~~~~~~~~~~--l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~  346 (728)
T KOG4535|consen  269 SPMRLEALQVLTLLARYFSMTQAYLME--LGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWT  346 (728)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHH
Confidence            467888888888877642222222222  2233333455678888888888887764     222322111112221111


Q ss_pred             ------HHHHhccchhHhHHHHHHHHHHHhhhCC-CCCchhhhhchHHHHH-HhhcCCChhHHHHHHHHHHHhccCChHH
Q 014945          204 ------LLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALE-RLIHSNDDEVLTDACWALSYLSDGTNDK  275 (415)
Q Consensus       204 ------L~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~l~-~lL~~~d~~v~~~a~~~l~~l~~~~~~~  275 (415)
                            .-....++.....+..+|.+++++.... ..-+... ....+.+. .+=.+.+.-++..|++++.-+.-+....
T Consensus       347 ~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~-~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr  425 (728)
T KOG4535|consen  347 MMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDR-QTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLR  425 (728)
T ss_pred             HHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcc-hhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchh
Confidence                  1122223345567788888888887553 1111111 12222222 2222334557888888888877666544


Q ss_pred             HHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhc----CCh---HHHHHHHHCCChHHHHHHh--cCCCccchHHHH
Q 014945          276 IQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT----GDD---MQTQCIINHQALPCLLDLL--TQNYKKSIKKEA  346 (415)
Q Consensus       276 ~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~----~~~---~~~~~~~~~~~l~~L~~ll--~~~~~~~v~~~a  346 (415)
                      .....-.+....+...|.+..-..+..+.|++|||..    +.+   .....+.. -.+..++..-  .+..+++|+..+
T Consensus       426 ~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad~dkV~~na  504 (728)
T KOG4535|consen  426 QDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASADKDKVKSNA  504 (728)
T ss_pred             hhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhhHH
Confidence            4444444566777777777777889999999999974    222   22222222 1223333322  222367899999


Q ss_pred             HHHHHHHhcCC---HHHHHHHHHcCCHHHHHHH-hccCCHHHHHHHHHHHHHHhCCC
Q 014945          347 CWTISNITAGN---VNQIQAIIEAGIIGPLVNL-LLNAEFEIKKEAAWAISNATSGG  399 (415)
Q Consensus       347 ~~~l~nl~~~~---~~~~~~l~~~~~i~~L~~~-l~~~~~~v~~~a~~aL~nl~~~~  399 (415)
                      ..+|+|+..--   .+.....+..|-+..+... ......+|+=+||++++|+..+-
T Consensus       505 vraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~  561 (728)
T KOG4535|consen  505 VRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNP  561 (728)
T ss_pred             HHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCc
Confidence            99999987520   0101111112222222222 23356789999999999998663

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.43  E-value=0.041  Score=46.95  Aligned_cols=197  Identities=19%  Similarity=0.284  Sum_probs=131.2

Q ss_pred             hcCchHHHHHhhcCCC-ChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCC---
Q 014945          112 QSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD---  187 (415)
Q Consensus       112 ~~g~i~~L~~ll~~~~-~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~---  187 (415)
                      ....+|.|+..+.+.+ .+.+|.+|+.+|+.+..  +         +..+.+-++.+++-..+++.+..++..+--.   
T Consensus        65 ~~~Av~~l~~vl~desq~pmvRhEAaealga~~~--~---------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~  133 (289)
T KOG0567|consen   65 DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD--P---------ESLEILTKYIKDPCKEVRETCELAIKRLEWKDII  133 (289)
T ss_pred             cchhhHHHHHHhcccccchHHHHHHHHHHHhhcc--h---------hhHHHHHHHhcCCccccchHHHHHHHHHHHhhcc
Confidence            3456899998887643 37889999999998873  3         3467777777777788888877777766311   


Q ss_pred             ------------CchhHHHHHhcCChHHHHHHhccchhHhH-HHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCC
Q 014945          188 ------------SPKCRDLVLSNGALMPLLAQFNEHAKLSM-LRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSND  254 (415)
Q Consensus       188 ------------~~~~~~~~~~~g~i~~L~~~l~~~~~~~~-~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d  254 (415)
                                  +|...   ...+-+..+-..|.+.+.+.. +..+.+.|.|+-.          ...+..+..-+..+.
T Consensus       134 ~~~~~~~p~~SvdPa~p---~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~----------EeaI~al~~~l~~~S  200 (289)
T KOG0567|consen  134 DKIANSSPYISVDPAPP---ANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT----------EEAINALIDGLADDS  200 (289)
T ss_pred             ccccccCccccCCCCCc---cccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc----------HHHHHHHHHhcccch
Confidence                        11111   111224444444423333332 3455555555532          345667778888888


Q ss_pred             hhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcC--CCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHH
Q 014945          255 DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR--HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD  332 (415)
Q Consensus       255 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~--~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~  332 (415)
                      .-.+..+..+++.+-..           -.++.|.+.|.  ..++-+|..|+.+||.++..           ..++.|.+
T Consensus       201 alfrhEvAfVfGQl~s~-----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e-----------~~~~vL~e  258 (289)
T KOG0567|consen  201 ALFRHEVAFVFGQLQSP-----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIADE-----------DCVEVLKE  258 (289)
T ss_pred             HHHHHHHHHHHhhccch-----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH-----------HHHHHHHH
Confidence            88999999999887421           23566777764  34678999999999999852           23667888


Q ss_pred             HhcCCCccchHHHHHHHHHHHhc
Q 014945          333 LLTQNYKKSIKKEACWTISNITA  355 (415)
Q Consensus       333 ll~~~~~~~v~~~a~~~l~nl~~  355 (415)
                      ++.++ ++-|++.+..+|.-+-.
T Consensus       259 ~~~D~-~~vv~esc~valdm~ey  280 (289)
T KOG0567|consen  259 YLGDE-ERVVRESCEVALDMLEY  280 (289)
T ss_pred             HcCCc-HHHHHHHHHHHHHHHHH
Confidence            89888 88888888888765543

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=97.39  E-value=0.0014  Score=60.17  Aligned_cols=187  Identities=21%  Similarity=0.184  Sum_probs=111.4

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC----CCCchhhh---h
Q 014945          168 SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK----PQPLFEQT---R  240 (415)
Q Consensus       168 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~----~~~~~~~~---~  240 (415)
                      +.+.-++..|+++++-+.-+..-..+...-..+...++..+ .+.....+..+.|+++|++..-    |.......   .
T Consensus       402 ~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl-~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg  480 (728)
T KOG4535|consen  402 SKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSL-EDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG  480 (728)
T ss_pred             hHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHh-hhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH
Confidence            34555777788888777655544445554445666666666 5556678899999999998542    33222221   1


Q ss_pred             chHHHHHHhhc---CCChhHHHHHHHHHHHhccCChHHHHH---HHHcCcHHHHHHh-cCCCChhhHHHHHHHHHHhhcC
Q 014945          241 PALPALERLIH---SNDDEVLTDACWALSYLSDGTNDKIQA---VIEAGVCPRLVEL-LRHPSPSVLIPALRTVGNIVTG  313 (415)
Q Consensus       241 ~~l~~l~~lL~---~~d~~v~~~a~~~l~~l~~~~~~~~~~---~~~~~~i~~L~~l-L~~~~~~v~~~a~~~l~nl~~~  313 (415)
                      ..+..+...-.   -++..|+.++.++|+|+.+.-+..+..   ....+.+..+... .-...-.|+-.+|.++||+..+
T Consensus       481 ~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn  560 (728)
T KOG4535|consen  481 LLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKN  560 (728)
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcC
Confidence            22233322221   235779999999999987532211110   1111222222222 2234567999999999999986


Q ss_pred             ChH-HHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc
Q 014945          314 DDM-QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA  355 (415)
Q Consensus       314 ~~~-~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~  355 (415)
                      ..- ....-....+++.|..++.+..+.+||..|+.+|.--..
T Consensus       561 ~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~  603 (728)
T KOG4535|consen  561 PALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK  603 (728)
T ss_pred             ccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence            542 111111224577788887666589999999999986664

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.37  E-value=0.0034  Score=63.85  Aligned_cols=164  Identities=18%  Similarity=0.157  Sum_probs=123.5

Q ss_pred             HHHHHHhhhCC-CCCchhhhhchHHHHHHhhc----CCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcC-C
Q 014945          221 TWTLSNFCRGK-PQPLFEQTRPALPALERLIH----SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-H  294 (415)
Q Consensus       221 ~~~l~~l~~~~-~~~~~~~~~~~l~~l~~lL~----~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~  294 (415)
                      ..++..+|+.. -.........+.|.+++...    .+||+++..|.-+++.+..-+.+.    .+. -++.|+..+. +
T Consensus       898 ~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~f----ces-~l~llftimeks  972 (1251)
T KOG0414|consen  898 ADLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEF----CES-HLPLLFTIMEKS  972 (1251)
T ss_pred             HHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHH----HHH-HHHHHHHHHhcC
Confidence            44455555443 11122334567788888874    457999999999999987655432    222 3688888886 8


Q ss_pred             CChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHH
Q 014945          295 PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLV  374 (415)
Q Consensus       295 ~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~  374 (415)
                      +++.+|..+.-++|.++...+...+     -.-+.|+..|.++ ++.||+.|..+++++...     ..+--.|.++.+.
T Consensus       973 p~p~IRsN~VvalgDlav~fpnlie-----~~T~~Ly~rL~D~-~~~vRkta~lvlshLILn-----dmiKVKGql~eMA 1041 (1251)
T KOG0414|consen  973 PSPRIRSNLVVALGDLAVRFPNLIE-----PWTEHLYRRLRDE-SPSVRKTALLVLSHLILN-----DMIKVKGQLSEMA 1041 (1251)
T ss_pred             CCceeeecchheccchhhhcccccc-----hhhHHHHHHhcCc-cHHHHHHHHHHHHHHHHh-----hhhHhcccHHHHH
Confidence            8999999999999999987774443     3456899999999 999999999999999864     1333478999999


Q ss_pred             HHhccCCHHHHHHHHHHHHHHhCCCC
Q 014945          375 NLLLNAEFEIKKEAAWAISNATSGGS  400 (415)
Q Consensus       375 ~~l~~~~~~v~~~a~~aL~nl~~~~~  400 (415)
                      .++.+++.+++.-|-.....++..++
T Consensus      1042 ~cl~D~~~~IsdlAk~FF~Els~k~n 1067 (1251)
T KOG0414|consen 1042 LCLEDPNAEISDLAKSFFKELSSKGN 1067 (1251)
T ss_pred             HHhcCCcHHHHHHHHHHHHHhhhccc
Confidence            99999999999999977777776653

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.37  E-value=0.021  Score=51.51  Aligned_cols=190  Identities=17%  Similarity=0.188  Sum_probs=115.1

Q ss_pred             HHHHhccchhHhHHHHHHHHHHHhhhCCCCCchh--hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC--ChHHHHHH
Q 014945          204 LLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE--QTRPALPALERLIHSNDDEVLTDACWALSYLSDG--TNDKIQAV  279 (415)
Q Consensus       204 L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~--~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~--~~~~~~~~  279 (415)
                      .+..+ .......+..++..+.++........+.  ....+++.+.+.++....+-+.-|+.+++-++-.  .......+
T Consensus        48 ~Id~l-~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei  126 (309)
T PF05004_consen   48 AIDLL-TEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI  126 (309)
T ss_pred             HHHHH-HhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence            34444 3445778888888888888776443332  2355678888888877666666677777766533  22222334


Q ss_pred             HHcCcHHHHHHhcCCCC--hhhHHHHHHHHHHhhc---CChHHHHHHHHCCChHHHHH--HhcCC---------CccchH
Q 014945          280 IEAGVCPRLVELLRHPS--PSVLIPALRTVGNIVT---GDDMQTQCIINHQALPCLLD--LLTQN---------YKKSIK  343 (415)
Q Consensus       280 ~~~~~i~~L~~lL~~~~--~~v~~~a~~~l~nl~~---~~~~~~~~~~~~~~l~~L~~--ll~~~---------~~~~v~  343 (415)
                      ++ .+.+.|...+.+..  ..++..++.+||-++.   .........++  .+..+..  ..+..         .++.+.
T Consensus       127 ~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l~  203 (309)
T PF05004_consen  127 FE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAALV  203 (309)
T ss_pred             HH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHHH
Confidence            43 46788888886554  4566677777776654   22222221112  2332211  22211         134577


Q ss_pred             HHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945          344 KEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG  398 (415)
Q Consensus       344 ~~a~~~l~nl~~~-~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~  398 (415)
                      ..|+.+-+-+... ....+....+. .++.|..+|.+++.+||..|..+|.-+...
T Consensus       204 ~aAL~aW~lLlt~~~~~~~~~~~~~-~~~~l~~lL~s~d~~VRiAAGEaiAll~E~  258 (309)
T PF05004_consen  204 AAALSAWALLLTTLPDSKLEDLLEE-ALPALSELLDSDDVDVRIAAGEAIALLYEL  258 (309)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            7776555555553 33334444443 699999999999999999999999887643

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=97.34  E-value=0.0064  Score=57.27  Aligned_cols=250  Identities=14%  Similarity=0.119  Sum_probs=145.8

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (415)
Q Consensus        72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  151 (415)
                      .+..|-..|.+.....++.|++.|..++...  |..-.+    .-+.+-.++++.+ ..+-..|...|..  .++.+..+
T Consensus       304 ~vs~L~~fL~s~rv~~rFsA~Riln~lam~~--P~kv~v----cN~evEsLIsd~N-r~IstyAITtLLK--TGt~e~id  374 (898)
T COG5240         304 TVSSLRTFLKSTRVVLRFSAMRILNQLAMKY--PQKVSV----CNKEVESLISDEN-RTISTYAITTLLK--TGTEETID  374 (898)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHHHHHhhC--Cceeee----cChhHHHHhhccc-ccchHHHHHHHHH--cCchhhHH
Confidence            4566667778888888999999998886542  221111    1244455566666 4555555444432  45566666


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC
Q 014945          152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK  231 (415)
Q Consensus       152 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~  231 (415)
                      .+++  .|+.++.=++++-..+   ++.++..|+-.-|.-+..     .+..|...|.+...-+..+.+..+++.+....
T Consensus       375 rLv~--~I~sfvhD~SD~FKiI---~ida~rsLsl~Fp~k~~s-----~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~  444 (898)
T COG5240         375 RLVN--LIPSFVHDMSDGFKII---AIDALRSLSLLFPSKKLS-----YLDFLGSSLLQEGGLEFKKYMVDAISDAMEND  444 (898)
T ss_pred             HHHH--HHHHHHHhhccCceEE---eHHHHHHHHhhCcHHHHH-----HHHHHHHHHHhcccchHHHHHHHHHHHHHhhC
Confidence            6654  3555555444433333   444444444333322222     34556666656667778888888888888776


Q ss_pred             CCCchhhhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHh
Q 014945          232 PQPLFEQTRPALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI  310 (415)
Q Consensus       232 ~~~~~~~~~~~l~~l~~lL~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl  310 (415)
                      |...    ..++..|..++.+. -+++....+.+|+.=......-      ...+..+..-+--++..+|..|+.+|+.+
T Consensus       445 p~sk----EraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P------~~yvrhIyNR~iLEN~ivRsaAv~aLskf  514 (898)
T COG5240         445 PDSK----ERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTP------GKYVRHIYNRLILENNIVRSAAVQALSKF  514 (898)
T ss_pred             chHH----HHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCc------chHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            5433    33455566666544 3455555555544422111110      01234444444446777999999999888


Q ss_pred             hcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHh
Q 014945          311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT  354 (415)
Q Consensus       311 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~  354 (415)
                      +..-.+.   +....+...|..++.+. ++++|..|.+.+.++-
T Consensus       515 ~ln~~d~---~~~~sv~~~lkRclnD~-DdeVRdrAsf~l~~~~  554 (898)
T COG5240         515 ALNISDV---VSPQSVENALKRCLNDQ-DDEVRDRASFLLRNMR  554 (898)
T ss_pred             ccCcccc---ccHHHHHHHHHHHhhcc-cHHHHHHHHHHHHhhh
Confidence            7643311   11223445677788888 9999999999999986

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.33  E-value=0.0012  Score=48.07  Aligned_cols=91  Identities=18%  Similarity=0.167  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCC
Q 014945          217 LRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS  296 (415)
Q Consensus       217 ~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~  296 (415)
                      +.-++++|...+..-+.........++|.++..+.++|..||..||.++.+++....+.+-. .=..+++.|..++.+++
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~-~f~~IF~~L~kl~~D~d   81 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILP-YFNEIFDALCKLSADPD   81 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCc
Confidence            34566677777666555556667889999999999999999999999999998654433221 11357888899999999


Q ss_pred             hhhHHHHHHHHHH
Q 014945          297 PSVLIPALRTVGN  309 (415)
Q Consensus       297 ~~v~~~a~~~l~n  309 (415)
                      +.|+..| ..|-+
T Consensus        82 ~~Vr~~a-~~Ld~   93 (97)
T PF12755_consen   82 ENVRSAA-ELLDR   93 (97)
T ss_pred             hhHHHHH-HHHHH
Confidence            9988776 44433

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.28  E-value=0.018  Score=45.61  Aligned_cols=126  Identities=13%  Similarity=0.124  Sum_probs=98.0

Q ss_pred             hHHHHHhcCChHHHHHHhccchh-----HhHHHHHHHHHHHhhhCCCCCchhhh-hchHHHHHHhhcCC--ChhHHHHHH
Q 014945          191 CRDLVLSNGALMPLLAQFNEHAK-----LSMLRNATWTLSNFCRGKPQPLFEQT-RPALPALERLIHSN--DDEVLTDAC  262 (415)
Q Consensus       191 ~~~~~~~~g~i~~L~~~l~~~~~-----~~~~~~a~~~l~~l~~~~~~~~~~~~-~~~l~~l~~lL~~~--d~~v~~~a~  262 (415)
                      +...++..|++..|+.++.....     ..+...++.++..|-++. ...+... ..++..++..+..+  |..+...++
T Consensus         3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sL   81 (160)
T PF11841_consen    3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSL   81 (160)
T ss_pred             hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHH
Confidence            34678889999999999965442     477888889999988763 3334333 45677777777544  688999999


Q ss_pred             HHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHH
Q 014945          263 WALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ  317 (415)
Q Consensus       263 ~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~  317 (415)
                      ..|-+++..++...+.+.+.=-++.|+.+|..+++.++..++..+-.+....++.
T Consensus        82 aILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~  136 (160)
T PF11841_consen   82 AILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS  136 (160)
T ss_pred             HHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence            9999999988877676666667999999999999999999999888887665543

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.27  E-value=0.013  Score=57.41  Aligned_cols=217  Identities=16%  Similarity=0.090  Sum_probs=146.3

Q ss_pred             hcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCC-hhHHHHHH
Q 014945          184 VAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSND-DEVLTDAC  262 (415)
Q Consensus       184 l~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d-~~v~~~a~  262 (415)
                      ++.....-+...++.|+...|+.+. ..+.+.....+..+|.  .  .-.-........++.+...++... ..-...++
T Consensus       489 ~aA~~K~~~~~~Ik~~~~~aLlrl~-~~q~e~akl~~~~aL~--~--~i~f~~~~~~~v~~~~~s~~~~d~~~~en~E~L  563 (748)
T KOG4151|consen  489 LAAKEKYERAKKIKPGGYEALLRLG-QQQFEEAKLKWYHALA--G--KIDFPGERSYEVVKPLDSALHNDEKGLENFEAL  563 (748)
T ss_pred             HhhhhHHhcCccccccHHHHHHHHH-HHhchHHHHHHHHHHh--h--hcCCCCCchhhhhhhhcchhhhhHHHHHHHHHH
Confidence            3333444567788899999999998 4555555555566665  1  111111122344444444444332 22345678


Q ss_pred             HHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHC-CChHHHHHHhcCCCccc
Q 014945          263 WALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH-QALPCLLDLLTQNYKKS  341 (415)
Q Consensus       263 ~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~-~~l~~L~~ll~~~~~~~  341 (415)
                      .++.||+..++...+.++....++.+-.++..+++..+..++..+.||..++.-....+.+. ..++.....+... +..
T Consensus       564 ~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~-~E~  642 (748)
T KOG4151|consen  564 EALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA-DEK  642 (748)
T ss_pred             HHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh-hhH
Confidence            88999988777666778888777888888888999999999999999999887666667773 5567676777665 777


Q ss_pred             hHHHHHHHHHHHhcCCHHHHHH-HHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014945          342 IKKEACWTISNITAGNVNQIQA-IIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYK  407 (415)
Q Consensus       342 v~~~a~~~l~nl~~~~~~~~~~-l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l  407 (415)
                      ....++.++..|+.-...++.. .-.......++.++.++++.++...+....|+. .+..+.++.+
T Consensus       643 ~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~-~~~~ei~~~~  708 (748)
T KOG4151|consen  643 FELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLF-EALFEIAEKI  708 (748)
T ss_pred             HhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHH-HHHHHHHHHh
Confidence            7777777777676644444442 223446788888999999999999888888844 3344444443

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.27  E-value=0.019  Score=47.34  Aligned_cols=92  Identities=15%  Similarity=0.176  Sum_probs=73.1

Q ss_pred             hHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCC-hHHHHHH
Q 014945          129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGA-LMPLLAQ  207 (415)
Q Consensus       129 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~-i~~L~~~  207 (415)
                      +.+|..++-+++-++...+...+     ..++.+...|.++++.+|.+|+.+|.+|...+.     +.-.|. +..++..
T Consensus         2 ~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-----ik~k~~l~~~~l~~   71 (178)
T PF12717_consen    2 PSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM-----IKVKGQLFSRILKL   71 (178)
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-----eeehhhhhHHHHHH
Confidence            78999999999999885443332     358899999999999999999999999975432     222233 3677788


Q ss_pred             hccchhHhHHHHHHHHHHHhhhCC
Q 014945          208 FNEHAKLSMLRNATWTLSNFCRGK  231 (415)
Q Consensus       208 l~~~~~~~~~~~a~~~l~~l~~~~  231 (415)
                      + .+++++++..|..++..+....
T Consensus        72 l-~D~~~~Ir~~A~~~~~e~~~~~   94 (178)
T PF12717_consen   72 L-VDENPEIRSLARSFFSELLKKR   94 (178)
T ss_pred             H-cCCCHHHHHHHHHHHHHHHHhc
Confidence            8 8889999999999999999773

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=97.26  E-value=0.016  Score=55.01  Aligned_cols=207  Identities=17%  Similarity=0.178  Sum_probs=128.8

Q ss_pred             ChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhc----cchhHhHHHHHHHHHHHhhhCCC
Q 014945          158 AVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGKP  232 (415)
Q Consensus       158 ~i~~L~~ll~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~----~~~~~~~~~~a~~~l~~l~~~~~  232 (415)
                      .+..++.+..+ .++..+..++.+++.++---+.. +.+ + ..+..+...+.    ........+...|+..-+.....
T Consensus       190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~-~~l-~-~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~  266 (415)
T PF12460_consen  190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDD-DDL-D-EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH  266 (415)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCh-hhH-H-HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence            44555555433 45667777777777776432111 100 0 12233333221    11234556666777776665432


Q ss_pred             CCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHH--------HHHHHHc----CcHHHHHHhcCCCChhhH
Q 014945          233 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK--------IQAVIEA----GVCPRLVELLRHPSPSVL  300 (415)
Q Consensus       233 ~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~--------~~~~~~~----~~i~~L~~lL~~~~~~v~  300 (415)
                          ......+..++.+|.+  +++...++.++..+....++.        ++.+.+.    .++|.|++.....+...+
T Consensus       267 ----~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k  340 (415)
T PF12460_consen  267 ----PLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIK  340 (415)
T ss_pred             ----chHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhH
Confidence                1234456677777765  677788888888887653322        2223332    356677777776666688


Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHH
Q 014945          301 IPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVN  375 (415)
Q Consensus       301 ~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~  375 (415)
                      ...+.+|+++..+-|...-.---..++|.+++.|..+ +..++..+..++..+....++.+..-++. +++.|++
T Consensus       341 ~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~-~~~v~~s~L~tL~~~l~~~~~~i~~hl~s-LI~~LL~  413 (415)
T PF12460_consen  341 SNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLP-DADVLLSSLETLKMILEEAPELISEHLSS-LIPRLLK  413 (415)
T ss_pred             HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHcCHHHHHHHHHH-HHHHHHh
Confidence            8899999999998774433222236899999999888 89999999999999998777766654443 5666654

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.23  E-value=0.013  Score=57.83  Aligned_cols=226  Identities=13%  Similarity=0.101  Sum_probs=150.2

Q ss_pred             HHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHH
Q 014945          117 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVL  196 (415)
Q Consensus       117 ~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~  196 (415)
                      ...+..+.++. +.++-.++..|..+.... +....+...+++...+..+.+.++-+--.|+..+..+|.-.|+      
T Consensus       730 qeai~sl~d~q-vpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e------  801 (982)
T KOG4653|consen  730 QEAISSLHDDQ-VPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE------  801 (982)
T ss_pred             HHHHHHhcCCc-ccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch------
Confidence            33444555555 789999999999999853 4555666678999999999999999999999988888755443      


Q ss_pred             hcCChHHHHHHhccc---hhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 014945          197 SNGALMPLLAQFNEH---AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN  273 (415)
Q Consensus       197 ~~g~i~~L~~~l~~~---~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~  273 (415)
                        .+++.+.....+.   ..++.+-.+-.++.++..............++..+...+.++|...+..++..++++|.-..
T Consensus       802 --~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a  879 (982)
T KOG4653|consen  802 --DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLA  879 (982)
T ss_pred             --hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHh
Confidence              2556666643221   12355555667888887765554555556777788888888888899999999999986433


Q ss_pred             HHHHHHHHcCcHHHHHHhcC-CCChhhHHHHHHHHHHhhcCChHHHHHHHH---CCChHHHHHHhcCCCccchHHHHHHH
Q 014945          274 DKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCIIN---HQALPCLLDLLTQNYKKSIKKEACWT  349 (415)
Q Consensus       274 ~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~---~~~l~~L~~ll~~~~~~~v~~~a~~~  349 (415)
                      .....++ ..++..++.+.. +++..+|..|...+..+..+.....-.+..   ......+..+.....+..++..|+.+
T Consensus       880 ~~vsd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~  958 (982)
T KOG4653|consen  880 FQVSDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLC  958 (982)
T ss_pred             hhhhHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence            2211111 123445555554 556789999999999998876643333321   13334444444444266677777776


Q ss_pred             HHHH
Q 014945          350 ISNI  353 (415)
Q Consensus       350 l~nl  353 (415)
                      +-.+
T Consensus       959 leei  962 (982)
T KOG4653|consen  959 LEEI  962 (982)
T ss_pred             HHHH
Confidence            6544

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.17  E-value=0.077  Score=51.79  Aligned_cols=225  Identities=16%  Similarity=0.175  Sum_probs=133.6

Q ss_pred             HHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCCchhHHHH
Q 014945          117 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLV  195 (415)
Q Consensus       117 ~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~  195 (415)
                      ..+-..|..++ .-.-..|.-.++-+..++.. .      .++.-+..+-.. .++.+.+-..-.++-+.....      
T Consensus       452 e~lKevLy~D~-AvsGEAAgi~MGl~mlGt~~-~------eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrq------  517 (929)
T KOG2062|consen  452 EKLKEVLYNDS-AVSGEAAGIAMGLLMLGTAN-Q------EAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQ------  517 (929)
T ss_pred             HHHHHHHhccc-hhhhhHHHHhhhhHhhCcCc-H------HHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhh------
Confidence            44555555544 33344455555555554321 1      134445555443 344444433333333322221      


Q ss_pred             HhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHh-hcCCChhHHHHHHHHHHHhccCChH
Q 014945          196 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERL-IHSNDDEVLTDACWALSYLSDGTND  274 (415)
Q Consensus       196 ~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~l-L~~~d~~v~~~a~~~l~~l~~~~~~  274 (415)
                         +...+++.-+..+.++-++...+.++.---.+-      ...+++..|++. ..+.+.+|+..|.-+|+.++..+++
T Consensus       518 ---e~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GT------gnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~  588 (929)
T KOG2062|consen  518 ---EDADPLIKELLRDKDPILRYGGMYTLALAYVGT------GNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE  588 (929)
T ss_pred             ---hhhHHHHHHHhcCCchhhhhhhHHHHHHHHhcc------CchhhHHHhhcccccccchHHHHHHHHHheeeEecChh
Confidence               133445554446778877777766655333221      113455556655 4667899999999999999877765


Q ss_pred             HHHHHHHcCcHHHHHHhcC-CCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHH
Q 014945          275 KIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI  353 (415)
Q Consensus       275 ~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl  353 (415)
                      .         ++..+++|. +-++.||-.+..+||-.|.|.....       ++..|-.+..++ ..-||+.|+.+++-|
T Consensus       589 ~---------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e-------Ai~lLepl~~D~-~~fVRQgAlIa~amI  651 (929)
T KOG2062|consen  589 Q---------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE-------AINLLEPLTSDP-VDFVRQGALIALAMI  651 (929)
T ss_pred             h---------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH-------HHHHHhhhhcCh-HHHHHHHHHHHHHHH
Confidence            4         467777775 5589999999999999998876322       355566677777 889999999999988


Q ss_pred             hcC-CHHHHHHHHHcCCHHHHHHHhccCCHH
Q 014945          354 TAG-NVNQIQAIIEAGIIGPLVNLLLNAEFE  383 (415)
Q Consensus       354 ~~~-~~~~~~~l~~~~~i~~L~~~l~~~~~~  383 (415)
                      ... ++.....  -.++...+.+.+.+.+.+
T Consensus       652 m~Q~t~~~~pk--v~~frk~l~kvI~dKhEd  680 (929)
T KOG2062|consen  652 MIQQTEQLCPK--VNGFRKQLEKVINDKHED  680 (929)
T ss_pred             HHhcccccCch--HHHHHHHHHHHhhhhhhH
Confidence            752 2221111  123556666677664443

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.17  E-value=0.015  Score=57.34  Aligned_cols=225  Identities=12%  Similarity=0.157  Sum_probs=143.1

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhh
Q 014945          161 IFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTR  240 (415)
Q Consensus       161 ~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~  240 (415)
                      ..+..+.++...++..++..|..++.... -...+...+++...+..+ .+.++-+.-+|...+..||.-.|       .
T Consensus       731 eai~sl~d~qvpik~~gL~~l~~l~e~r~-~~~~~~~ekvl~i~ld~L-kdedsyvyLnaI~gv~~Lcevy~-------e  801 (982)
T KOG4653|consen  731 EAISSLHDDQVPIKGYGLQMLRHLIEKRK-KATLIQGEKVLAIALDTL-KDEDSYVYLNAIRGVVSLCEVYP-------E  801 (982)
T ss_pred             HHHHHhcCCcccchHHHHHHHHHHHHhcc-hhhhhhHHHHHHHHHHHh-cccCceeeHHHHHHHHHHHHhcc-------h
Confidence            34445556677789999999999987553 235667778888999999 78888888899998888887633       4


Q ss_pred             chHHHHHHhh-cCCC---hhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChH
Q 014945          241 PALPALERLI-HSND---DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM  316 (415)
Q Consensus       241 ~~l~~l~~lL-~~~d---~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~  316 (415)
                      .++|-+.+.- +..+   .+-+-..-.++.++...-.+....... -++...+....+++...|..++..+|++|.-...
T Consensus       802 ~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~  880 (982)
T KOG4653|consen  802 DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAF  880 (982)
T ss_pred             hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhh
Confidence            5566665532 2211   222222224555554333332222222 3556677777888888899999999999975553


Q ss_pred             HHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHH---cCCHHHHHHHhcc-CCHHHHHHHHHHH
Q 014945          317 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE---AGIIGPLVNLLLN-AEFEIKKEAAWAI  392 (415)
Q Consensus       317 ~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~---~~~i~~L~~~l~~-~~~~v~~~a~~aL  392 (415)
                      .....+. .++..++.+...+.++-+|+.|+..+..+..+.....-.+..   .+....+...... ++..++..|+.++
T Consensus       881 ~vsd~~~-ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~l  959 (982)
T KOG4653|consen  881 QVSDFFH-EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCL  959 (982)
T ss_pred             hhhHHHH-HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            3332221 345556666665547889999999999998865544433332   2234444444444 4556777888777


Q ss_pred             HHHh
Q 014945          393 SNAT  396 (415)
Q Consensus       393 ~nl~  396 (415)
                      ..+-
T Consensus       960 eei~  963 (982)
T KOG4653|consen  960 EEIQ  963 (982)
T ss_pred             HHHH
Confidence            6653

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.15  E-value=0.022  Score=45.13  Aligned_cols=130  Identities=13%  Similarity=0.097  Sum_probs=99.1

Q ss_pred             HHHHHcCcHHHHHHhcCCCC------hhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCC-ccchHHHHHHH
Q 014945          277 QAVIEAGVCPRLVELLRHPS------PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY-KKSIKKEACWT  349 (415)
Q Consensus       277 ~~~~~~~~i~~L~~lL~~~~------~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~~v~~~a~~~  349 (415)
                      ..+++.|++..|++++.+..      ..+...++.++..+....- .....++..++..+..++.... +..+...|...
T Consensus         5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~-vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI   83 (160)
T PF11841_consen    5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGI-VSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI   83 (160)
T ss_pred             HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCc-CchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence            45788899999999997654      3666778888877776532 2233555567888888887663 67899999999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014945          350 ISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYK  407 (415)
Q Consensus       350 l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l  407 (415)
                      |-+++.+++..-..+-+.=-++.|+..|...+++++..|...+.-+...++.+.-+.+
T Consensus        84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i  141 (160)
T PF11841_consen   84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEI  141 (160)
T ss_pred             HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence            9999987666544444444599999999999999999999999999988877655554

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=97.15  E-value=0.29  Score=49.71  Aligned_cols=238  Identities=15%  Similarity=0.151  Sum_probs=142.2

Q ss_pred             hCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhc---cchh----HhHHHHHHH
Q 014945          155 DHGAVPIFVRLLSS-----PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---EHAK----LSMLRNATW  222 (415)
Q Consensus       155 ~~g~i~~L~~ll~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~---~~~~----~~~~~~a~~  222 (415)
                      +.|++..++.++.+     ....+....+..|...+.- +.+|..+++.|+++.|+..+.   ....    ..+.+..+.
T Consensus       115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~  193 (802)
T PF13764_consen  115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE  193 (802)
T ss_pred             cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence            45888888888875     2345666666666666655 568999999999999998874   2222    556666666


Q ss_pred             HHHHhhhCCCCCchh-------------hhhchHHHHHHhhcC----CChhHHHHHHHHHHHhccCChHHHHHHHHcCcH
Q 014945          223 TLSNFCRGKPQPLFE-------------QTRPALPALERLIHS----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVC  285 (415)
Q Consensus       223 ~l~~l~~~~~~~~~~-------------~~~~~l~~l~~lL~~----~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i  285 (415)
                      ++-.+..........             ....-+..+++.+.+    .++.+....+++|.+|+.+..+..+.+++.  +
T Consensus       194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F  271 (802)
T PF13764_consen  194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--F  271 (802)
T ss_pred             HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--H
Confidence            665555432111110             012235555555554    468899999999999999999887776643  2


Q ss_pred             HHHHHhcCC--CChhhHHHHHHHHHHhhcCC------hHHHHHHHHCCChHHHHHHhcCCCccc----------------
Q 014945          286 PRLVELLRH--PSPSVLIPALRTVGNIVTGD------DMQTQCIINHQALPCLLDLLTQNYKKS----------------  341 (415)
Q Consensus       286 ~~L~~lL~~--~~~~v~~~a~~~l~nl~~~~------~~~~~~~~~~~~l~~L~~ll~~~~~~~----------------  341 (415)
                      ...+++=.-  ....--...+.++..++.+-      ....+.+++.|++...+.+|... -|.                
T Consensus       272 ~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~-~P~~~~~~s~eWk~~l~~p  350 (802)
T PF13764_consen  272 KPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKH-FPSLKNTDSPEWKEFLSRP  350 (802)
T ss_pred             HHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHh-CcccccCCCHHHHHHhcCC
Confidence            222232111  11111123355666665543      35677888999999888877543 221                


Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHHHHHHHHHhC
Q 014945          342 IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNATS  397 (415)
Q Consensus       342 v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~-~~~~v~~~a~~aL~nl~~  397 (415)
                      --..+...|.-++.++.. .+.++..++++.+..+=.- ++..+=.-|=..|-.+..
T Consensus       351 sLp~iL~lL~GLa~gh~~-tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~  406 (802)
T PF13764_consen  351 SLPYILRLLRGLARGHEP-TQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAE  406 (802)
T ss_pred             cHHHHHHHHHHHHhcCHH-HHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence            224566777777776554 3455666677555544332 234444444444444444

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.11  E-value=0.03  Score=55.02  Aligned_cols=245  Identities=14%  Similarity=0.075  Sum_probs=158.5

Q ss_pred             HhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHH-HhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHH
Q 014945          142 IASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALG-NVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNA  220 (415)
Q Consensus       142 l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~-nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a  220 (415)
                      ++.....-+...++.|+...|+++.....+..+-....+|. .+...+..      ....++++...+.++..-.-....
T Consensus       489 ~aA~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~------~~~v~~~~~s~~~~d~~~~en~E~  562 (748)
T KOG4151|consen  489 LAAKEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER------SYEVVKPLDSALHNDEKGLENFEA  562 (748)
T ss_pred             HhhhhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc------hhhhhhhhcchhhhhHHHHHHHHH
Confidence            33333555566778899999999987777777767777776 33322211      112455666665333333334567


Q ss_pred             HHHHHHhhhCCCCCchhhh-hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHc-CcHHHHHHhcCCCChh
Q 014945          221 TWTLSNFCRGKPQPLFEQT-RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRHPSPS  298 (415)
Q Consensus       221 ~~~l~~l~~~~~~~~~~~~-~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~L~~lL~~~~~~  298 (415)
                      +.++.||+..+........ ...++.+-.++..+++..+..++..+.||..++.-....+.+. .-.+.....+...+..
T Consensus       563 L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~  642 (748)
T KOG4151|consen  563 LEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEK  642 (748)
T ss_pred             HHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhH
Confidence            8888888877633333333 4456667777788899999999999999998776665656653 3455555555556666


Q ss_pred             hHHHHHHHHHHhhcCChHHHH-HHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHh
Q 014945          299 VLIPALRTVGNIVTGDDMQTQ-CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL  377 (415)
Q Consensus       299 v~~~a~~~l~nl~~~~~~~~~-~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l  377 (415)
                      ...+++.++..|+.-...... ..-.......+..++.+. ++.++......+.|+.....+....+.....++.+...-
T Consensus       643 ~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~-~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~  721 (748)
T KOG4151|consen  643 FELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDE-DDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQ  721 (748)
T ss_pred             HhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc-hhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHH
Confidence            677777777666554443333 222336778899999999 999999999999997766667667777776776666554


Q ss_pred             ccCCHHHHHHHHHHHH
Q 014945          378 LNAEFEIKKEAAWAIS  393 (415)
Q Consensus       378 ~~~~~~v~~~a~~aL~  393 (415)
                      .-.-...+..+..+|.
T Consensus       722 ~~~~a~~~~~~~~~l~  737 (748)
T KOG4151|consen  722 KLNRAPKREDAAPCLS  737 (748)
T ss_pred             HhhhhhhhhhhhhHHH
Confidence            3333344444444443

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.09  E-value=0.041  Score=49.99  Aligned_cols=202  Identities=12%  Similarity=0.115  Sum_probs=144.2

Q ss_pred             HHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCch----hhh----hchHHHHHHhhcCCChhHHHHHHHH
Q 014945          193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF----EQT----RPALPALERLIHSNDDEVLTDACWA  264 (415)
Q Consensus       193 ~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~----~~~----~~~l~~l~~lL~~~d~~v~~~a~~~  264 (415)
                      ..+...+.+..|+..| ..-+.+.+..++.++.++.+.......    ...    ..++..|+..-.  ++++...+-..
T Consensus        70 ~Ei~~~dll~~Li~~L-~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~m  146 (335)
T PF08569_consen   70 QEIYRSDLLYLLIRNL-PKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDM  146 (335)
T ss_dssp             HHHHHHTHHHHHHHTG-GGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHh-hhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHH
Confidence            4555667888888888 777888999999999999988743322    122    223334444333  45555555555


Q ss_pred             HHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHC---CChHHHHHHhcCCCccc
Q 014945          265 LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH---QALPCLLDLLTQNYKKS  341 (415)
Q Consensus       265 l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~---~~l~~L~~ll~~~~~~~  341 (415)
                      +...+.. +.....++....+..+......++-++...|..++..+.+.........+..   .++.....+|.++ +.-
T Consensus       147 lRec~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~-NYv  224 (335)
T PF08569_consen  147 LRECIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESS-NYV  224 (335)
T ss_dssp             HHHHTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-S-SHH
T ss_pred             HHHHHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCC-CeE
Confidence            6555544 4455678888888999999999999999999999999888877666666654   4567788899998 999


Q ss_pred             hHHHHHHHHHHHhcC--CHHHHHHHH-HcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Q 014945          342 IKKEACWTISNITAG--NVNQIQAII-EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG  399 (415)
Q Consensus       342 v~~~a~~~l~nl~~~--~~~~~~~l~-~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~  399 (415)
                      +|..+...|+.+...  +.......+ +..-+..++.+|.+....+|-+|-..+.-++...
T Consensus       225 tkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp  285 (335)
T PF08569_consen  225 TKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP  285 (335)
T ss_dssp             HHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred             eehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence            999999999999863  444444444 3456889999999999999999999999888654

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.97  E-value=0.0013  Score=49.11  Aligned_cols=72  Identities=21%  Similarity=0.254  Sum_probs=60.1

Q ss_pred             CChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHh
Q 014945          325 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT  396 (415)
Q Consensus       325 ~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~  396 (415)
                      .++..|+.+|..+.++.+..-||.=|+.++...|..+..+-+.|+-..++++|.++|++|+.+|+.|+..+.
T Consensus        43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM  114 (119)
T ss_dssp             HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            457889999955548889999999999999977777777767899999999999999999999999998775

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.92  E-value=0.47  Score=47.05  Aligned_cols=323  Identities=13%  Similarity=0.109  Sum_probs=187.5

Q ss_pred             HHHHHHhhcCC-CHHHHHHHHHHHHHHhccCCCCchhHHH--hcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchh
Q 014945           73 LPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVI--QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  149 (415)
Q Consensus        73 i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~--~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  149 (415)
                      ...++++++.+ |..++..+++.++.++..- +-.-+.+.  -..+...+.+++..-..-+.+...+..++-+.....+.
T Consensus       528 Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~-nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~  606 (978)
T KOG1993|consen  528 YCAFLNLLQDQNDLVVRLTTARTLKLVVDDW-NFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEH  606 (978)
T ss_pred             HHHHHHhcCccccceeehHHHHHHHHhhhhc-cCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence            45677888865 7788888999998887543 22222221  13344555566655332466777777777666533333


Q ss_pred             hHHHHhCCChHHHHHhhC---CCCHHHHHHHHHHHHHhcC----CCchhHHHHHhcCChHHHHHHhccc---hhHhHHHH
Q 014945          150 TRVVIDHGAVPIFVRLLS---SPTDDVREQAVWALGNVAG----DSPKCRDLVLSNGALMPLLAQFNEH---AKLSMLRN  219 (415)
Q Consensus       150 ~~~~~~~g~i~~L~~ll~---~~~~~v~~~a~~~L~nl~~----~~~~~~~~~~~~g~i~~L~~~l~~~---~~~~~~~~  219 (415)
                      .....  +-+-.++..|-   .+.+-++...+.+|.|+..    .++.+..      ++-+.+.+-.+.   +..-+.+.
T Consensus       607 I~P~~--~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~------fL~pVIel~~D~~sP~hv~L~ED  678 (978)
T KOG1993|consen  607 IAPYA--STIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYP------FLYPVIELSTDPSSPEHVYLLED  678 (978)
T ss_pred             hhHHH--HHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchH------HHHHHHHHhcCCCCCceeehhhh
Confidence            22111  11112222221   2456678888888888752    1221111      222333333221   23345566


Q ss_pred             HHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHH-HhccCChHHHHHHHHcCcHHHHHHhcCCCChh
Q 014945          220 ATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALS-YLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS  298 (415)
Q Consensus       220 a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~-~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~  298 (415)
                      +.........+.+. -.....+++|.++..++...+.++. ++.++. ++.-.++.. -.....|++..+..++.+-..+
T Consensus       679 gmeLW~~~L~n~~~-l~p~ll~L~p~l~~~iE~ste~L~t-~l~Ii~sYilLd~~~f-l~~y~~~i~k~~~~~l~dvr~e  755 (978)
T KOG1993|consen  679 GMELWLTTLMNSQK-LTPELLLLFPHLLYIIEQSTENLPT-VLMIISSYILLDNTVF-LNDYAFGIFKKLNDLLDDVRNE  755 (978)
T ss_pred             HHHHHHHHHhcccc-cCHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHhhccHHH-HHHHHHHHHHHHHHHHHHhhHH
Confidence            66666665555322 2233467788888888765544432 333333 232233332 2234457888888888766666


Q ss_pred             hHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHh-cCCCccchHHHHHHHHHHHhcCCHHHHHHHHH-cC--------
Q 014945          299 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL-TQNYKKSIKKEACWTISNITAGNVNQIQAIIE-AG--------  368 (415)
Q Consensus       299 v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~-~~--------  368 (415)
                      -....+.++-.+...++ ........++++.+..-+ ...+.|.+...-..+++.+.--+++..-.++. .+        
T Consensus       756 gl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~msvlqt~~~~d~~~~~  834 (978)
T KOG1993|consen  756 GLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFMSVLQTKNTYDILIAM  834 (978)
T ss_pred             HHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHHHHHhhhhHHHHHHH
Confidence            66777777777776655 444455668888887755 23336788888888888888777777766654 22        


Q ss_pred             CHHHHHHHhcc-CCHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014945          369 IIGPLVNLLLN-AEFEIKKEAAWAISNATSGGSNEQIKYKF  408 (415)
Q Consensus       369 ~i~~L~~~l~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~l~  408 (415)
                      ++..-+.++.+ .+++-|+--+-|+..+...+.+.....|.
T Consensus       835 li~~WI~~~~~I~~~k~rKl~~LalsSll~t~~~~ila~~~  875 (978)
T KOG1993|consen  835 LIGNWILLFDHINHPKDRKLNTLALSSLLRTNNPDILAVLD  875 (978)
T ss_pred             HHHHHHHHcccCCCHHHhhHHHHHHHHHhccCCcHHHHHHh
Confidence            23333334444 67899999999999999887776665553

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=96.91  E-value=0.2  Score=45.19  Aligned_cols=171  Identities=16%  Similarity=0.122  Sum_probs=109.4

Q ss_pred             CchHHHH-HhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC-chh
Q 014945          114 GVVPRFI-EFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKC  191 (415)
Q Consensus       114 g~i~~L~-~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~-~~~  191 (415)
                      +++..|+ ..+++.+ +.+|..|+.||+-.+--+.+....     .++.+...+..+++.++..|+.++..+.... ...
T Consensus        26 ~ll~~lI~P~v~~~~-~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~   99 (298)
T PF12719_consen   26 SLLDSLILPAVQSSD-PAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI   99 (298)
T ss_pred             HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence            3455554 6788888 899999999999988765533322     3667777777778999999999999886321 111


Q ss_pred             HHHHH-------hcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcC----CChhHHHH
Q 014945          192 RDLVL-------SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS----NDDEVLTD  260 (415)
Q Consensus       192 ~~~~~-------~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~----~d~~v~~~  260 (415)
                      -+...       ....+..+...+ .+.+++++..++..++.|.-...-..   ...++..|+-+..+    ++..++.-
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~  175 (298)
T PF12719_consen  100 FDSESDNDESVDSKSLLKILTKFL-DSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQC  175 (298)
T ss_pred             ccchhccCccchHhHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence            11111       123455666666 55688899999999999887653222   12333333332222    34566666


Q ss_pred             HHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCC
Q 014945          261 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP  295 (415)
Q Consensus       261 a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~  295 (415)
                      ....+-..+...... +..+...+++.+..+....
T Consensus       176 L~~Ffp~y~~s~~~~-Q~~l~~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  176 LSVFFPVYASSSPEN-QERLAEAFLPTLRTLSNAP  209 (298)
T ss_pred             HHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHhCc
Confidence            666666666666655 4455566777777776543

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.91  E-value=0.009  Score=60.92  Aligned_cols=159  Identities=21%  Similarity=0.246  Sum_probs=119.2

Q ss_pred             chHHHHHhhcC----CCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhcCCCc
Q 014945          115 VVPRFIEFLSR----DDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSP  189 (415)
Q Consensus       115 ~i~~L~~ll~~----~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~nl~~~~~  189 (415)
                      +.|.+++..+.    ++ |++|..|.-+|+.+..-+.++...     .+|.|+..+. ++++.++.+++-++|.++..-|
T Consensus       920 f~piv~e~c~n~~~~sd-p~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p~IRsN~VvalgDlav~fp  993 (1251)
T KOG0414|consen  920 FAPIVVEGCRNPGLFSD-PELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP  993 (1251)
T ss_pred             HHHHHHHHhcCCCcCCC-HHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCceeeecchheccchhhhcc
Confidence            56777887754    34 899999999999998866665543     4889999998 7899999999999999987766


Q ss_pred             hhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 014945          190 KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS  269 (415)
Q Consensus       190 ~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~  269 (415)
                      ..-+.     .-+.|...| .+.++.++++|..++++|...    ....+.|.++-+..+|.++++.|..-|=..+..|+
T Consensus       994 nlie~-----~T~~Ly~rL-~D~~~~vRkta~lvlshLILn----dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen  994 NLIEP-----WTEHLYRRL-RDESPSVRKTALLVLSHLILN----DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred             cccch-----hhHHHHHHh-cCccHHHHHHHHHHHHHHHHh----hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence            54333     345677777 788999999999999999865    34556889999999999999998877765666665


Q ss_pred             cCChHHHHHHHHcCcHHHHHHhcCCC
Q 014945          270 DGTNDKIQAVIEAGVCPRLVELLRHP  295 (415)
Q Consensus       270 ~~~~~~~~~~~~~~~i~~L~~lL~~~  295 (415)
                      ......+      +++|-++..|++.
T Consensus      1064 ~k~n~iy------nlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1064 SKGNTIY------NLLPDILSRLSNG 1083 (1251)
T ss_pred             hcccchh------hhchHHHHhhccC
Confidence            4432221      2445555555443

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=96.90  E-value=0.39  Score=46.51  Aligned_cols=296  Identities=15%  Similarity=0.162  Sum_probs=151.8

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (415)
Q Consensus        72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  151 (415)
                      ....++..-+ ++...+..|+..+.++....  |....    ..+..++.+..+.+ ..+|.+|+..|-.+|.+++++..
T Consensus        24 ~y~~il~~~k-g~~k~K~Laaq~I~kffk~F--P~l~~----~Ai~a~~DLcEDed-~~iR~~aik~lp~~ck~~~~~v~   95 (556)
T PF05918_consen   24 DYKEILDGVK-GSPKEKRLAAQFIPKFFKHF--PDLQE----EAINAQLDLCEDED-VQIRKQAIKGLPQLCKDNPEHVS   95 (556)
T ss_dssp             HHHHHHHGGG-S-HHHHHHHHHHHHHHHCC---GGGHH----HHHHHHHHHHT-SS-HHHHHHHHHHGGGG--T--T-HH
T ss_pred             HHHHHHHHcc-CCHHHHHHHHHHHHHHHhhC--hhhHH----HHHHHHHHHHhccc-HHHHHHHHHhHHHHHHhHHHHHh
Confidence            4456666666 46889999999999987543  22221    24788999999998 99999999999999999888877


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhc--cchhHhHHHHHHHHHHHhhh
Q 014945          152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN--EHAKLSMLRNATWTLSNFCR  229 (415)
Q Consensus       152 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~--~~~~~~~~~~a~~~l~~l~~  229 (415)
                      .+     ...|+++|.++++.-...+-++|..+...++..        .+..+...+.  ...+..+++.++..|..=..
T Consensus        96 kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~--------tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~  162 (556)
T PF05918_consen   96 KV-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKG--------TLTGLFSQIESSKSGDEQVRERALKFLREKLK  162 (556)
T ss_dssp             HH-----HHHHHHHTT---HHHHHHHHHHHHHHHHH-HHH--------HHHHHHHHHH---HS-HHHHHHHHHHHHHHGG
T ss_pred             HH-----HHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHH--------HHHHHHHHHHhcccCchHHHHHHHHHHHHHHh
Confidence            65     568999999988887788888888876555432        3445555552  24566788888876643332


Q ss_pred             C-CCC---CchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc----CChHHHHHHHHcCcHHHHHHhc------CCC
Q 014945          230 G-KPQ---PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD----GTNDKIQAVIEAGVCPRLVELL------RHP  295 (415)
Q Consensus       230 ~-~~~---~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~----~~~~~~~~~~~~~~i~~L~~lL------~~~  295 (415)
                      . .+.   +..+....++..+-+.|++-..+--.-...+|..+-.    ......+.++     +.+.+..      ...
T Consensus       163 ~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv-----~ii~eQa~Ld~~f~~s  237 (556)
T PF05918_consen  163 PLKPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELV-----DIIEEQADLDQPFDPS  237 (556)
T ss_dssp             GS-TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHH-----HHHHHHHTTTS---SS
T ss_pred             hCcHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHH-----HHHHHHhccCCCCCCc
Confidence            2 111   1133334555666677765333333344445555543    1222323332     3333221      223


Q ss_pred             ChhhHHHHHHHHHH----hhcCC--hHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCH-HHHHHHHHcC
Q 014945          296 SPSVLIPALRTVGN----IVTGD--DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV-NQIQAIIEAG  368 (415)
Q Consensus       296 ~~~v~~~a~~~l~n----l~~~~--~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~l~~~~  368 (415)
                      ++......+.|+..    +..+.  ......+.+ .++|.+-.+     ....+-....++.-++.... .....+++. 
T Consensus       238 D~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~-kvlP~l~~l-----~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~-  310 (556)
T PF05918_consen  238 DPESIDRLISCLRQALPFFSRGVSSSKFVNYMCE-KVLPKLSDL-----PEDRKLDLLKLLAELSPFCGAQDARQLLPS-  310 (556)
T ss_dssp             SHHHHHHHHHHHHHHGGG-BTTB--HHHHHHHHH-HTCCCTT----------HHHHHHHHHHHHHTT----THHHHHHH-
T ss_pred             CHHHHHHHHHHHHHhhHHhcCCCChHHHHHHHHH-HhcCChhhC-----ChHHHHHHHHHHHHHcCCCCcccHHHHHHH-
Confidence            34444333333332    11111  122332223 455544444     34567777888888886322 113333322 


Q ss_pred             CHHHHHHHhcc--CCH----HHHHHHHHHHHHHhCCCC
Q 014945          369 IIGPLVNLLLN--AEF----EIKKEAAWAISNATSGGS  400 (415)
Q Consensus       369 ~i~~L~~~l~~--~~~----~v~~~a~~aL~nl~~~~~  400 (415)
                      ++..|...|-.  ..+    ...+..+.++.+|+...+
T Consensus       311 i~~~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p  348 (556)
T PF05918_consen  311 IFQLLKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSP  348 (556)
T ss_dssp             HHHHHHTTS----------HHHHHHHHHHHHHHHTT-T
T ss_pred             HHHHHHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCc
Confidence            33333333322  122    345667777778876644

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.87  E-value=0.0017  Score=48.56  Aligned_cols=71  Identities=18%  Similarity=0.317  Sum_probs=60.3

Q ss_pred             cHHHHHHhc-CCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc
Q 014945          284 VCPRLVELL-RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA  355 (415)
Q Consensus       284 ~i~~L~~lL-~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~  355 (415)
                      ++..|+.+| .+.++.+..-||.=||.++...|..+..+-+.|+-..++.++.++ +++||.+|..++..+..
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~-d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHE-DPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-S-SHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            578899999 445778888899999999999888888777889999999999999 99999999999987764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=96.87  E-value=0.081  Score=48.94  Aligned_cols=147  Identities=14%  Similarity=0.219  Sum_probs=101.6

Q ss_pred             ChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHH-HHHHhccCChHHHHH
Q 014945          200 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACW-ALSYLSDGTNDKIQA  278 (415)
Q Consensus       200 ~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~-~l~~l~~~~~~~~~~  278 (415)
                      ++..++..|.++.+...+.-|+..|..+|...+..-+....-++..+++.-.+.++++...|.. ++.-++...+..   
T Consensus       330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~---  406 (516)
T KOG2956|consen  330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ---  406 (516)
T ss_pred             HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh---
Confidence            4566778886668888999999999999998766666655666666666656665555544444 344445555432   


Q ss_pred             HHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc
Q 014945          279 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA  355 (415)
Q Consensus       279 ~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~  355 (415)
                           .+..+..++...+......++..+..++.+-+...-..+-..+.|.+++...+. +..||+.|+++|..+..
T Consensus       407 -----~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~-SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  407 -----CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDST-SSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             -----HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCc-hHHhhhhHHHhHHHHHH
Confidence                 123344444446667777888888888876542222222337889999999999 99999999999998875

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=96.86  E-value=0.1  Score=47.06  Aligned_cols=170  Identities=16%  Similarity=0.078  Sum_probs=114.5

Q ss_pred             CChHHHH-HhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCc
Q 014945          157 GAVPIFV-RLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL  235 (415)
Q Consensus       157 g~i~~L~-~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~  235 (415)
                      +.+..|+ ..+.++++.+|+.++.|||-.+--+......     .++.+...+ +..+..++..++.++.-+........
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~-~~~~~~v~~~al~~l~Dll~~~g~~~   99 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQAL-QKDDEEVKITALKALFDLLLTHGIDI   99 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHcCchh
Confidence            3444444 4678889999999999999998665532222     456677777 55588899999999988876542211


Q ss_pred             h---------hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcC----CCChhhHHH
Q 014945          236 F---------EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR----HPSPSVLIP  302 (415)
Q Consensus       236 ~---------~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~----~~~~~v~~~  302 (415)
                      .         .....++..+.+.+.+.+++++..++..++.|.-...-..    ...++..|+-..-    .++..++..
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~  175 (298)
T PF12719_consen  100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQC  175 (298)
T ss_pred             ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence            1         1224677888899999999999999999999763321110    0223344443332    234567777


Q ss_pred             HHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCC
Q 014945          303 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN  337 (415)
Q Consensus       303 a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~  337 (415)
                      -...+-..+...+.. +..+...++|.+..+....
T Consensus       176 L~~Ffp~y~~s~~~~-Q~~l~~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  176 LSVFFPVYASSSPEN-QERLAEAFLPTLRTLSNAP  209 (298)
T ss_pred             HHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHhCc
Confidence            777778888877644 5566678888888888665

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=96.84  E-value=0.0018  Score=35.98  Aligned_cols=30  Identities=20%  Similarity=0.282  Sum_probs=26.3

Q ss_pred             CHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945          369 IIGPLVNLLLNAEFEIKKEAAWAISNATSG  398 (415)
Q Consensus       369 ~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~  398 (415)
                      ++|.+++++.+++++||..|+++|+.++.+
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            478999999999999999999999999864

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.81  E-value=0.14  Score=51.61  Aligned_cols=197  Identities=18%  Similarity=0.204  Sum_probs=122.6

Q ss_pred             HHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchH--HHHHHhhcCCCh-h
Q 014945          180 ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPAL--PALERLIHSNDD-E  256 (415)
Q Consensus       180 ~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l--~~l~~lL~~~d~-~  256 (415)
                      +|.++..+.+.....+++.|++..+...+....+.++...++..+.+++...+..........+  ..+-.++...+. +
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e  573 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE  573 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence            4557777778778889999999999999976778889999999999999775332222222111  233334444443 7


Q ss_pred             HHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHH-HHHHhc
Q 014945          257 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPC-LLDLLT  335 (415)
Q Consensus       257 v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~-L~~ll~  335 (415)
                      .-..++..++.+....++......               .+.+...-..++.......   .....+ ..+.. +..++.
T Consensus       574 rsY~~~siLa~ll~~~~~~~~~~~---------------r~~~~~~l~e~i~~~~~~~---~~~~~~-~~f~~~~~~il~  634 (699)
T KOG3665|consen  574 RSYNAASILALLLSDSEKTTECVF---------------RNSVNELLVEAISRWLTSE---IRVIND-RSFFPRILRILR  634 (699)
T ss_pred             HHHHHHHHHHHHHhCCCcCccccc---------------hHHHHHHHHHHhhccCccc---eeehhh-hhcchhHHHHhc
Confidence            777777777777655433111111               1122222222333332221   111222 22333 666666


Q ss_pred             CCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHHHHHHHHH
Q 014945          336 QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNA  395 (415)
Q Consensus       336 ~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~-~~~~v~~~a~~aL~nl  395 (415)
                      .+..+.....|.|++.+++..+++..+.+.+.|+++.+.+.-.. ...+++.++...+.++
T Consensus       635 ~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  695 (699)
T KOG3665|consen  635 LSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESC  695 (699)
T ss_pred             ccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhcc
Confidence            66578899999999999999888888888899999888876543 2445566655554443

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=96.75  E-value=0.1  Score=51.10  Aligned_cols=281  Identities=16%  Similarity=0.115  Sum_probs=160.1

Q ss_pred             cCchHHHHHhhcCC-------CChHHHHHHHHHHHHHhC--CCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 014945          113 SGVVPRFIEFLSRD-------DFPQLQFEAAWALTNIAS--GTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGN  183 (415)
Q Consensus       113 ~g~i~~L~~ll~~~-------~~~~i~~~a~~~L~~l~~--~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~n  183 (415)
                      .|+++.++..|...       +++.-.+.|++.+.++..  ..+.....+.+.-+++.++..++++.--++..|+..+..
T Consensus       407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~  486 (970)
T COG5656         407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST  486 (970)
T ss_pred             hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence            47788888888421       124445667777777665  323334445555567777777888888899999999999


Q ss_pred             hcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCc--hhhhhchHHHHHHhhcCCChhHHHHH
Q 014945          184 VAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL--FEQTRPALPALERLIHSNDDEVLTDA  261 (415)
Q Consensus       184 l~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~--~~~~~~~l~~l~~lL~~~d~~v~~~a  261 (415)
                      +..+   +++..+-..+.+...+++ ++++.+++..|+.++.-+..+.....  ...+.+.++.|+.+-+.-+.++...+
T Consensus       487 ~eeD---fkd~~ill~aye~t~ncl-~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~v  562 (970)
T COG5656         487 IEED---FKDNGILLEAYENTHNCL-KNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMV  562 (970)
T ss_pred             HHHh---cccchHHHHHHHHHHHHH-hcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHH
Confidence            9544   334444444677777788 55788888899999988887751111  11223333444444344455555554


Q ss_pred             HHHHH-HhccCChHHHHHHHHc---CcHHHHHHhcCCCC------hhhHHHHHHHHHHhh---cCCh--HHHHHHHHCCC
Q 014945          262 CWALS-YLSDGTNDKIQAVIEA---GVCPRLVELLRHPS------PSVLIPALRTVGNIV---TGDD--MQTQCIINHQA  326 (415)
Q Consensus       262 ~~~l~-~l~~~~~~~~~~~~~~---~~i~~L~~lL~~~~------~~v~~~a~~~l~nl~---~~~~--~~~~~~~~~~~  326 (415)
                      ...+. +.+..-......+...   .++....+++..++      ++-+..|.+.|..+.   -+-+  ..+-.-+....
T Consensus       563 Me~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~sl  642 (970)
T COG5656         563 MESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSL  642 (970)
T ss_pred             HHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence            44332 2222111111111111   12223333332221      123344444444433   2221  11222234466


Q ss_pred             hHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCH-HHHHHHHHHHHHHhCCCC
Q 014945          327 LPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEF-EIKKEAAWAISNATSGGS  400 (415)
Q Consensus       327 l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~-~v~~~a~~aL~nl~~~~~  400 (415)
                      .|.+--++++. ..+.-.+|+-.+-+.+--..+ +. -+.-|+.+.+.+++.+... .--.++.-++.|+...|.
T Consensus       643 ypvi~Filkn~-i~dfy~Ea~dildg~tf~ske-I~-pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~  714 (970)
T COG5656         643 YPVISFILKNE-ISDFYQEALDILDGYTFMSKE-IE-PIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGK  714 (970)
T ss_pred             HHHHHHHHhhh-HHHHHHHHHHHHhhhhHHHHH-hh-hhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCc
Confidence            77777778887 788888898888777643222 21 2234567777777776664 667889999999998774

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=96.70  E-value=0.012  Score=58.54  Aligned_cols=155  Identities=17%  Similarity=0.187  Sum_probs=113.2

Q ss_pred             hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHH--cCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh
Q 014945          238 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE--AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD  315 (415)
Q Consensus       238 ~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~--~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~  315 (415)
                      +...++|.+++.++..+..++..-+.+|+++..+-+..  .+..  ..++|.|++.|+-++..++..++.++.-+....+
T Consensus       864 fF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~--vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~  941 (1030)
T KOG1967|consen  864 FFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQ--VLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE  941 (1030)
T ss_pred             HHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHH--hhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc
Confidence            34678999999999778888888888898887766542  2322  2578889999999999999999999988876554


Q ss_pred             HHHHHHHHCCChHHHHHHhcCCCc---cchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHH
Q 014945          316 MQTQCIINHQALPCLLDLLTQNYK---KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAI  392 (415)
Q Consensus       316 ~~~~~~~~~~~l~~L~~ll~~~~~---~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL  392 (415)
                      .....-.+ .++|.++.+-.+. +   ..||..|..++..+..-.|...-......++..|...|+++-.-||++|..+=
T Consensus       942 tL~t~~~~-Tlvp~lLsls~~~-~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen  942 TLQTEHLS-TLVPYLLSLSSDN-DNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred             ccchHHHh-HHHHHHHhcCCCC-CcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence            33222222 5678888777666 4   57999999999999984333222333344888999999988888999998765


Q ss_pred             HHHh
Q 014945          393 SNAT  396 (415)
Q Consensus       393 ~nl~  396 (415)
                      .+-.
T Consensus      1020 ~~W~ 1023 (1030)
T KOG1967|consen 1020 QNWY 1023 (1030)
T ss_pred             hhhh
Confidence            4433

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=96.70  E-value=0.016  Score=39.32  Aligned_cols=67  Identities=16%  Similarity=0.227  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 014945          300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG  368 (415)
Q Consensus       300 ~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~  368 (415)
                      .+.++|++|+++..+ .....+.+.++++.++++..+.+...+|-.|.++|+-++.. .+-.+.+-+.|
T Consensus         4 lKaaLWaighIgss~-~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T-~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSSP-LGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST-EEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcCh-HHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC-HHHHHHHHHcC
Confidence            568999999999854 45666667799999999998775889999999999988864 44444444443

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=96.69  E-value=0.14  Score=43.36  Aligned_cols=138  Identities=17%  Similarity=0.269  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCC-----CChhhHHHHHHHHHHhhcCCh-HHHHHHHHCCChHHHH
Q 014945          258 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-----PSPSVLIPALRTVGNIVTGDD-MQTQCIINHQALPCLL  331 (415)
Q Consensus       258 ~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-----~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~~l~~L~  331 (415)
                      ..+++..+..++.+++.. ..++++.+--.+..+|..     +.+..|..++++||.++..++ +....++..+++|..+
T Consensus        96 VcnaL~LlQcvASHpdTr-~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL  174 (293)
T KOG3036|consen   96 VCNALALLQCVASHPDTR-RAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL  174 (293)
T ss_pred             HHHHHHHHHHHhcCcchH-HHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence            456666777777776655 568888887788888853     346789999999999998655 5566777889999999


Q ss_pred             HHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHH--------cCCHHHHH-HHhccCCHHHHHHHHHHHHHHhCC
Q 014945          332 DLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE--------AGIIGPLV-NLLLNAEFEIKKEAAWAISNATSG  398 (415)
Q Consensus       332 ~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~--------~~~i~~L~-~~l~~~~~~v~~~a~~aL~nl~~~  398 (415)
                      +.+..+ +..-+..|.+++..|..++. ...+++.        ..++..++ .+.+.+++++.+.++.+..+++..
T Consensus       175 rime~G-SelSKtvA~fIlqKIlldD~-GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn  248 (293)
T KOG3036|consen  175 RIMESG-SELSKTVATFILQKILLDDV-GLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN  248 (293)
T ss_pred             HHHhcc-cHHHHHHHHHHHHHHhhccc-cHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence            999999 88889999999988876321 1222221        11333333 334457889999999999888854

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=96.57  E-value=0.21  Score=43.25  Aligned_cols=101  Identities=12%  Similarity=0.062  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHh
Q 014945          130 QLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF  208 (415)
Q Consensus       130 ~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l  208 (415)
                      .....|+.+|--++--+|..+..+.....+..++.+|.. ..+.++..++.+|..+..++|.+...+-+.+++..++.++
T Consensus       106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll  185 (257)
T PF08045_consen  106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL  185 (257)
T ss_pred             HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence            445668889988888889999999999999999999954 6788999999999999999998888999999999999999


Q ss_pred             ccc-hhHhHHHHHHHHHHHhhhC
Q 014945          209 NEH-AKLSMLRNATWTLSNFCRG  230 (415)
Q Consensus       209 ~~~-~~~~~~~~a~~~l~~l~~~  230 (415)
                      +.. .+.+++-.++.+|.-....
T Consensus       186 k~~~~~~~~r~K~~EFL~fyl~~  208 (257)
T PF08045_consen  186 KSKSTDRELRLKCIEFLYFYLMP  208 (257)
T ss_pred             ccccccHHHhHHHHHHHHHHHcc
Confidence            543 3677777777776655543

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.51  E-value=0.05  Score=57.18  Aligned_cols=164  Identities=16%  Similarity=0.136  Sum_probs=109.6

Q ss_pred             HHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCCh
Q 014945          218 RNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP  297 (415)
Q Consensus       218 ~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~  297 (415)
                      .++.|+...++...+  -.....+.+..++..+..+...+|..|+.|++.+...++..   +....+-..+..-+.+...
T Consensus       795 ~~a~li~~~la~~r~--f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v---L~~~dvq~~Vh~R~~Dssa  869 (1692)
T KOG1020|consen  795 DDAKLIVFYLAHARS--FSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSV---LSRPDVQEAVHGRLNDSSA  869 (1692)
T ss_pred             hhHHHHHHHHHhhhH--HHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh---hcCHHHHHHHHHhhccchh
Confidence            455555555554421  11223566777888888888999999999999999877643   2223344445555677888


Q ss_pred             hhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHh
Q 014945          298 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL  377 (415)
Q Consensus       298 ~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l  377 (415)
                      .||++|+..+|..+...++....     ....+..-+.++ ...||+.+...+.-+|..+|+. ..+.+  +...++.-.
T Consensus       870 sVREAaldLvGrfvl~~~e~~~q-----yY~~i~erIlDt-gvsVRKRvIKIlrdic~e~pdf-~~i~~--~cakmlrRv  940 (1692)
T KOG1020|consen  870 SVREAALDLVGRFVLSIPELIFQ-----YYDQIIERILDT-GVSVRKRVIKILRDICEETPDF-SKIVD--MCAKMLRRV  940 (1692)
T ss_pred             HHHHHHHHHHhhhhhccHHHHHH-----HHHHHHhhcCCC-chhHHHHHHHHHHHHHHhCCCh-hhHHH--HHHHHHHHh
Confidence            99999999999998877765553     345677777777 8899999999999999865442 11111  122233333


Q ss_pred             ccCCHHHHHHHHHHHHHH
Q 014945          378 LNAEFEIKKEAAWAISNA  395 (415)
Q Consensus       378 ~~~~~~v~~~a~~aL~nl  395 (415)
                      .+++..+++-++.++.++
T Consensus       941 ~DEEg~I~kLv~etf~kl  958 (1692)
T KOG1020|consen  941 NDEEGNIKKLVRETFLKL  958 (1692)
T ss_pred             ccchhHHHHHHHHHHHHH
Confidence            333444777777777776

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=96.50  E-value=0.87  Score=43.93  Aligned_cols=286  Identities=13%  Similarity=0.100  Sum_probs=149.4

Q ss_pred             HHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHh
Q 014945           86 NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRL  165 (415)
Q Consensus        86 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l  165 (415)
                      ..+..|+..++..+...+-.++..+     ...--.++......+.|..+...|..++........ ...    ..+.+.
T Consensus         5 ~~R~~a~~~l~~~i~~~~~~~i~~i-----W~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~-~~R----~~fF~~   74 (464)
T PF11864_consen    5 SERIKAAEELCESIQKYPLSSIEEI-----WYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSG-LMR----AEFFRD   74 (464)
T ss_pred             HHHHHHHHHHHHHHHhCCchHHHHH-----HHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccH-HHH----HHHHHH
Confidence            4566677777766554322222222     222234555554467888888888888876433111 111    112222


Q ss_pred             hC-CCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccch--------------------------hHhHHH
Q 014945          166 LS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA--------------------------KLSMLR  218 (415)
Q Consensus       166 l~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~--------------------------~~~~~~  218 (415)
                      +. ...++....-+.+|..|+.++...  ..++.+..+.|...+....                          +.....
T Consensus        75 I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~  152 (464)
T PF11864_consen   75 ISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLS  152 (464)
T ss_pred             HhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHH
Confidence            22 234444556667777777666544  2245566666766662111                          222334


Q ss_pred             HHHHHHHHhhhCC-CCCchhhhhchHHHHHHhh-cCCChhHHHHHHHHHHHhccC---ChHHHHHHHHcCcHHHHHHhcC
Q 014945          219 NATWTLSNFCRGK-PQPLFEQTRPALPALERLI-HSNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLR  293 (415)
Q Consensus       219 ~a~~~l~~l~~~~-~~~~~~~~~~~l~~l~~lL-~~~d~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~i~~L~~lL~  293 (415)
                      .....+.++.... .......+.+++..+..+- .+.++.....++..+-.+..+   +++...     .++..|.... 
T Consensus       153 ~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~-----~~i~vLCsi~-  226 (464)
T PF11864_consen  153 DLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLS-----PCIEVLCSIV-  226 (464)
T ss_pred             HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHH-----HHHHHHhhHh-
Confidence            4444455555444 2233334444555444442 223333334444443333221   111111     1122233332 


Q ss_pred             CCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCC-----CccchHHHHHHHHHHHhcCCHHHHHHHHH-c
Q 014945          294 HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-----YKKSIKKEACWTISNITAGNVNQIQAIIE-A  367 (415)
Q Consensus       294 ~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~-----~~~~v~~~a~~~l~nl~~~~~~~~~~l~~-~  367 (415)
                       ...+....+-.++.||+...-.+       ..+..|..+|.++     .+..+...|...+..+..+..++...-+. .
T Consensus       227 -~~~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~  298 (464)
T PF11864_consen  227 -NSVSLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFS  298 (464)
T ss_pred             -cccccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceeccc
Confidence             22256777888999998754322       2356677878322     13456678888898888765222221121 2


Q ss_pred             C--CHHHHHHHhccCCHHHHHHHHHHHHHHhC
Q 014945          368 G--IIGPLVNLLLNAEFEIKKEAAWAISNATS  397 (415)
Q Consensus       368 ~--~i~~L~~~l~~~~~~v~~~a~~aL~nl~~  397 (415)
                      -  +++.+...++.+++.+-.+.+..+.++..
T Consensus       299 ~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~  330 (464)
T PF11864_consen  299 PSSVLPSLLNALKSNSPRVDYEILLLINRLLD  330 (464)
T ss_pred             HHHHHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence            2  78888888988888888888888888773

>PRK14707 hypothetical protein; Provisional

Probab=96.48  E-value=1  Score=49.73  Aligned_cols=318  Identities=17%  Similarity=0.103  Sum_probs=170.4

Q ss_pred             HHHHHHhhcC--CCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh
Q 014945           73 LPAMVAGVWS--DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  150 (415)
Q Consensus        73 i~~l~~~l~~--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  150 (415)
                      +..+++.+..  ++.+.+. ++..|...+..+ ......+-..|+...|-.+-+-++++..+..+...-..++.+ ...+
T Consensus       165 ~~lllNafSKw~~~~~c~~-aa~~la~~~~~~-d~~~~~~~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~-~~l~  241 (2710)
T PRK14707        165 ISLALNAFSKWSDNPDCQA-VAPRFAALVASD-DRLRSAMDAQGVATVLNALCKWPDTPDCGNAVSALAERLADE-SRLR  241 (2710)
T ss_pred             HHHHHHHhhcCCCCchHHH-HHHHHHHHhcCC-hhhhcccchHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCc-HHHH
Confidence            4455555552  3444444 444444444433 233333434444444444445566455544444444445543 3333


Q ss_pred             HHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhh
Q 014945          151 RVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  229 (415)
Q Consensus       151 ~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~  229 (415)
                      .. ++...+...++.|+. ++...-.+++.++..=..+.+..+..+- ...+...++-|.+-.+..+...+...+..=..
T Consensus       242 ~~-~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~-~q~vanalNalSKwpd~~vc~~Aa~~la~rl~  319 (2710)
T PRK14707        242 NE-LKPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALD-PINVTQALNALSKWADLPVCAEAAIALAERLA  319 (2710)
T ss_pred             Hh-CChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcC-HHHHHHHHhhhhcCCCchHHHHHHHHHHHHHh
Confidence            33 333345555565554 5665555666555543334444444432 22455556666677777777666655554333


Q ss_pred             CCCCCchhh-hhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHH
Q 014945          230 GKPQPLFEQ-TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG  308 (415)
Q Consensus       230 ~~~~~~~~~-~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~  308 (415)
                      +++...... ..++-..|..+-+-+|..+...+..+|.--...+++..+.+--.|+-..|-.+-+-++..+...+...|+
T Consensus       320 ~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA  399 (2710)
T PRK14707        320 DDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALA  399 (2710)
T ss_pred             ccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHH
Confidence            333222222 2333334444445677666666666665544444444343333344334444445566666666767776


Q ss_pred             HhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHH
Q 014945          309 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEA  388 (415)
Q Consensus       309 nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a  388 (415)
                      .=..+.++..+.+-..|+-..|-.+-+.+ +..+...++..|.--..++.+-.+.+-..++...|--+-+.+|..+...|
T Consensus       400 ~~l~~d~~l~~~~~~Q~van~lnalsKWP-d~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~a  478 (2710)
T PRK14707        400 EHVVDDLELRKGLDPQGVSNALNALAKWP-DLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICGQT  478 (2710)
T ss_pred             HHhccChhhhhhcchhhHHHHHHHhhcCC-cchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHHH
Confidence            66656666655554446666666677788 77888888887776666667766555555555555555567887777666


Q ss_pred             HHHHHHHh
Q 014945          389 AWAISNAT  396 (415)
Q Consensus       389 ~~aL~nl~  396 (415)
                      +..|..=.
T Consensus       479 a~~La~~l  486 (2710)
T PRK14707        479 ASALAARL  486 (2710)
T ss_pred             HHHHHHHh
Confidence            66665433

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=96.46  E-value=0.13  Score=44.17  Aligned_cols=152  Identities=13%  Similarity=0.127  Sum_probs=102.6

Q ss_pred             CChhHHHHHHHHHHHhccCChHHHHHHHHc-CcHHHHHHh-------cCCCC--h---hhHHHHHHHHHHhhcCChHHHH
Q 014945          253 NDDEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVEL-------LRHPS--P---SVLIPALRTVGNIVTGDDMQTQ  319 (415)
Q Consensus       253 ~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~L~~l-------L~~~~--~---~v~~~a~~~l~nl~~~~~~~~~  319 (415)
                      .+++.++.|+.-|+.--+..++..-.+..+ |.+..|++-       ++.++  .   .-...|+..+..++.+ ++.+.
T Consensus         7 ~~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAsh-petr~   85 (262)
T PF04078_consen    7 CNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASH-PETRM   85 (262)
T ss_dssp             SSHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHH
T ss_pred             cCcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcC-hHHHH
Confidence            356778887777776655444443333333 665555433       33332  2   1223455556666664 55778


Q ss_pred             HHHHCCChHHHHHHhcCCC----ccchHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHH
Q 014945          320 CIINHQALPCLLDLLTQNY----KKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN  394 (415)
Q Consensus       320 ~~~~~~~l~~L~~ll~~~~----~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~n  394 (415)
                      .++++++.-.|..+|+...    -..+|-.+..+++.+.. ++++.+..+.+.+++|..++.|+.++.-.+..|...+..
T Consensus        86 ~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqK  165 (262)
T PF04078_consen   86 PFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQK  165 (262)
T ss_dssp             HHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            8999999888888886552    24688889999999997 688999999999999999999999999999999999999


Q ss_pred             HhCCCCHHHHHHH
Q 014945          395 ATSGGSNEQIKYK  407 (415)
Q Consensus       395 l~~~~~~~~~~~l  407 (415)
                      +..+  ...+.|+
T Consensus       166 IL~d--d~GL~yi  176 (262)
T PF04078_consen  166 ILLD--DVGLNYI  176 (262)
T ss_dssp             HHHS--HHHHHHH
T ss_pred             HHcc--hhHHHHH
Confidence            9864  4444554

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=96.45  E-value=0.19  Score=43.32  Aligned_cols=222  Identities=14%  Similarity=0.153  Sum_probs=127.0

Q ss_pred             CHHHHHHHHHHHHHhcCCCchhHHHHHh-cCChHHHHHHhc------cch--hH---hHHHHHHHHHHHhhhCCCCCchh
Q 014945          170 TDDVREQAVWALGNVAGDSPKCRDLVLS-NGALMPLLAQFN------EHA--KL---SMLRNATWTLSNFCRGKPQPLFE  237 (415)
Q Consensus       170 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~-~g~i~~L~~~l~------~~~--~~---~~~~~a~~~l~~l~~~~~~~~~~  237 (415)
                      +++.++.|+.-|+.--...++..-.+.. .|.+..|++-+-      ..+  +.   .-..+|+..+--++.+ |.....
T Consensus         8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAsh-petr~~   86 (262)
T PF04078_consen    8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASH-PETRMP   86 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred             CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcC-hHHHHH
Confidence            5778888888888776655555444433 455555554331      111  12   2234445555556665 555555


Q ss_pred             hhhchHH-HHHHhhcCCC-----hhHHHHHHHHHHHhccC-ChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHh
Q 014945          238 QTRPALP-ALERLIHSND-----DEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI  310 (415)
Q Consensus       238 ~~~~~l~-~l~~lL~~~d-----~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl  310 (415)
                      +...-+| .|.++|+..+     +.++-.+++.++.+... +.+.+..+.+++++|..+..+..+++--+.-|..++..+
T Consensus        87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI  166 (262)
T PF04078_consen   87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI  166 (262)
T ss_dssp             HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            5443333 4556665432     66889999999999864 456778889999999999999988888888899999888


Q ss_pred             hcCChHHHHHHH-------H-CCChHHHHH-HhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHH---cCCHHHHHHHhc
Q 014945          311 VTGDDMQTQCII-------N-HQALPCLLD-LLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE---AGIIGPLVNLLL  378 (415)
Q Consensus       311 ~~~~~~~~~~~~-------~-~~~l~~L~~-ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~---~~~i~~L~~~l~  378 (415)
                      ...+. ....+.       . ..++..++. +...+ ++++-+....+-..++.+ +.....+..   ..+-...+..+-
T Consensus       167 L~dd~-GL~yiC~t~eRf~av~~vL~~mV~~l~~~p-S~RLLKhIIrCYlRLsdn-prar~aL~~~LP~~Lrd~~f~~~l  243 (262)
T PF04078_consen  167 LLDDV-GLNYICQTAERFFAVAMVLNKMVEQLVKQP-SPRLLKHIIRCYLRLSDN-PRAREALRQCLPDQLRDGTFSNIL  243 (262)
T ss_dssp             HHSHH-HHHHHTSSHHHHHHHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHTTS-TTHHHHHHHHS-GGGTSSTTTTGG
T ss_pred             Hcchh-HHHHHhcCHHHHHHHHHHHHHHHHHHccCC-ChhHHHHHHHHHHHHccC-HHHHHHHHHhCcHHHhcHHHHHHH
Confidence            76432 111111       0 123444444 44555 889999999999999874 333333332   111111111112


Q ss_pred             cCCHHHHHHHHHHHHHH
Q 014945          379 NAEFEIKKEAAWAISNA  395 (415)
Q Consensus       379 ~~~~~v~~~a~~aL~nl  395 (415)
                      .+|+.++.--...+.|+
T Consensus       244 ~~D~~~k~~l~qLl~nl  260 (262)
T PF04078_consen  244 KDDPSTKRWLQQLLSNL  260 (262)
T ss_dssp             CS-HHHHHHHHHHHHHT
T ss_pred             hcCHHHHHHHHHHHHHh
Confidence            24666666555555554

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.44  E-value=0.81  Score=42.92  Aligned_cols=265  Identities=13%  Similarity=0.097  Sum_probs=135.8

Q ss_pred             hcCchHHHHHhh----cCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhcC
Q 014945          112 QSGVVPRFIEFL----SRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAG  186 (415)
Q Consensus       112 ~~g~i~~L~~ll----~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~nl~~  186 (415)
                      +.|.+..++..+    .+++ ..++..|+.+|++.+++-|+....... -.+..++.-|. ..+.+|+-.++.+|..+..
T Consensus       252 ~~~lL~s~~~~la~ka~dp~-a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~  329 (533)
T KOG2032|consen  252 KTGLLGSVLLSLANKATDPS-AKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLE  329 (533)
T ss_pred             ccccHHHHHHHHHHhccCch-hHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHH
Confidence            334444444433    4455 689999999999999985654443333 23555555444 4568899999999888764


Q ss_pred             CCc--hhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCC--Cchhh--hhchHHHHHHhhcCCChhHHHH
Q 014945          187 DSP--KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ--PLFEQ--TRPALPALERLIHSNDDEVLTD  260 (415)
Q Consensus       187 ~~~--~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~--~~~~~--~~~~l~~l~~lL~~~d~~v~~~  260 (415)
                      .-.  .....++.  +...+..+. .+.+.+++.++...+..|+.....  ..+..  +.+....++-.|+++++.+ ..
T Consensus       330 ~~~~~~l~~~~l~--ialrlR~l~-~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~v-a~  405 (533)
T KOG2032|consen  330 KASNDDLESYLLN--IALRLRTLF-DSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYV-AR  405 (533)
T ss_pred             hhhhcchhhhchh--HHHHHHHHH-HhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHH-HH
Confidence            322  12122211  233344445 677888888888887777755422  22211  2222223334445566655 45


Q ss_pred             HHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHH---HHHHHhhcCChHHHHHHHHCCChHHHHHHhcCC
Q 014945          261 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPAL---RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN  337 (415)
Q Consensus       261 a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~---~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~  337 (415)
                      ||+.....+.-+-.... .  .++++...    +.+.. +..+.   |++ .+....++......     .....++++.
T Consensus       406 ACr~~~~~c~p~l~rke-~--~~~~q~~l----d~~~~-~~q~Fyn~~c~-~L~~i~~d~l~~~~-----t~~~~~f~ss  471 (533)
T KOG2032|consen  406 ACRSELRTCYPNLVRKE-L--YHLFQESL----DTDMA-RFQAFYNQWCI-QLNHIHPDILMLLL-----TEDQHIFSSS  471 (533)
T ss_pred             HHHHHHHhcCchhHHHH-H--HHHHhhhh----HHhHH-HHHHHHHHHHH-HHhhhCHHHHHHHH-----Hhchhheecc
Confidence            66666665533222111 1  12222222    11110 11111   111 11111222222111     1223344444


Q ss_pred             CccchHHHHHHHHHHHhcCCHHHHHHHH-HcCCHHHHHHHhccCCHHHHHHHHHHHHHHhC
Q 014945          338 YKKSIKKEACWTISNITAGNVNQIQAII-EAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  397 (415)
Q Consensus       338 ~~~~v~~~a~~~l~nl~~~~~~~~~~l~-~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~  397 (415)
                       -+.++..+...-.++..+..+...+.. -.-+...+-.+..++-++++..|..|+..+..
T Consensus       472 -we~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~  531 (533)
T KOG2032|consen  472 -WEQVREAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV  531 (533)
T ss_pred             -hHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence             456777666666666654222222222 12245566666677889999999999987754

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=96.37  E-value=0.13  Score=47.74  Aligned_cols=139  Identities=19%  Similarity=0.215  Sum_probs=84.2

Q ss_pred             HHHHHhhcCCC-hhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcC------CCChhhHHHHHHHHHHhhcCChH
Q 014945          244 PALERLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR------HPSPSVLIPALRTVGNIVTGDDM  316 (415)
Q Consensus       244 ~~l~~lL~~~d-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~------~~~~~v~~~a~~~l~nl~~~~~~  316 (415)
                      +.+-.-+...| ..-+..|+..+..++.........++    ...+..+|.      +.++.-+..|+..++.++.....
T Consensus       213 EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t  288 (370)
T PF08506_consen  213 EYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGST  288 (370)
T ss_dssp             HHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--
T ss_pred             HHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhcc
Confidence            33333443333 45677888888888854433322222    222333332      45678888999999999875421


Q ss_pred             ------------HHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHH
Q 014945          317 ------------QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI  384 (415)
Q Consensus       317 ------------~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v  384 (415)
                                  ....++...++|-|. - ..+..|-++..|++.+..+-..-+.  +.+.  +++|.++..|.+++.-|
T Consensus       289 ~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~-~~~~~piLka~aik~~~~Fr~~l~~--~~l~--~~~~~l~~~L~~~~~vv  362 (370)
T PF08506_consen  289 TKSGVTQTNELVDVVDFFSQHVLPELQ-P-DVNSHPILKADAIKFLYTFRNQLPK--EQLL--QIFPLLVNHLQSSSYVV  362 (370)
T ss_dssp             BTTB-S-B-TTS-HHHHHHHHTCHHHH---SS-S-HHHHHHHHHHHHHHGGGS-H--HHHH--HHHHHHHHHTTSS-HHH
T ss_pred             ccCCcccccccccHHHHHHHHhHHHhc-c-cCCCCcchHHHHHHHHHHHHhhCCH--HHHH--HHHHHHHHHhCCCCcch
Confidence                        234455555666665 1 2223778999999999999874332  1222  27999999999999999


Q ss_pred             HHHHHHHH
Q 014945          385 KKEAAWAI  392 (415)
Q Consensus       385 ~~~a~~aL  392 (415)
                      ...|+.|+
T Consensus       363 ~tyAA~~i  370 (370)
T PF08506_consen  363 HTYAAIAI  370 (370)
T ss_dssp             HHHHHHHH
T ss_pred             hhhhhhhC
Confidence            99999875

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=96.36  E-value=0.49  Score=44.03  Aligned_cols=180  Identities=10%  Similarity=0.099  Sum_probs=110.7

Q ss_pred             hHHHHHHHHHHHhhhCCCCCchh-hhhchHHHHHHhhcC-CChhHHHHHHHHHHHhccCChHHHHHHHHc--CcHHHHHH
Q 014945          215 SMLRNATWTLSNFCRGKPQPLFE-QTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEA--GVCPRLVE  290 (415)
Q Consensus       215 ~~~~~a~~~l~~l~~~~~~~~~~-~~~~~l~~l~~lL~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~--~~i~~L~~  290 (415)
                      +-+..|+.-|..+........+. ....++..+++.|.+ .++.++.-|++.|..++...+..   +.+.  -++..+++
T Consensus       302 ~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~---l~DstE~ai~K~Le  378 (516)
T KOG2956|consen  302 SERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPAR---LFDSTEIAICKVLE  378 (516)
T ss_pred             hHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHh---hhchHHHHHHHHHH
Confidence            33444444333333332333333 335667778888877 67888999999999999876644   2222  23445555


Q ss_pred             hcCCCChhhHHHHHHH-HHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcC-CHHHHHHHHHcC
Q 014945          291 LLRHPSPSVLIPALRT-VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAG  368 (415)
Q Consensus       291 lL~~~~~~v~~~a~~~-l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~  368 (415)
                      .-.+..+.+...|... +.-+++..+..        .+..+..++... +...-..+...+..++.. ..+....++. .
T Consensus       379 aa~ds~~~v~~~Aeed~~~~las~~P~~--------~I~~i~~~Ilt~-D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~-d  448 (516)
T KOG2956|consen  379 AAKDSQDEVMRVAEEDCLTTLASHLPLQ--------CIVNISPLILTA-DEPRAVAVIKMLTKLFERLSAEELLNLLP-D  448 (516)
T ss_pred             HHhCCchhHHHHHHHHHHHHHHhhCchh--------HHHHHhhHHhcC-cchHHHHHHHHHHHHHhhcCHHHHHHhhh-h
Confidence            5555555555444443 33344433321        244566666666 666666666678888863 4454444444 4


Q ss_pred             CHHHHHHHhccCCHHHHHHHHHHHHHHhCCCC-HHHHHHH
Q 014945          369 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGS-NEQIKYK  407 (415)
Q Consensus       369 ~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~-~~~~~~l  407 (415)
                      +.|.+++...+.+..||+.|.++|.-+...-. .+.-+||
T Consensus       449 iaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL  488 (516)
T KOG2956|consen  449 IAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHL  488 (516)
T ss_pred             hhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHh
Confidence            99999999999999999999999998875433 3333444

>PRK14707 hypothetical protein; Provisional

Probab=96.35  E-value=1.3  Score=48.99  Aligned_cols=320  Identities=14%  Similarity=0.055  Sum_probs=175.8

Q ss_pred             cHHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh
Q 014945           72 SLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  150 (415)
Q Consensus        72 ~i~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  150 (415)
                      +|..+++.+.. .+...-..++..|...+... ......+-..|+-..|-.+-+-++.+.....+.++-..++.+ +..+
T Consensus       206 ~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~-~~l~~~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~-~~l~  283 (2710)
T PRK14707        206 GVATVLNALCKWPDTPDCGNAVSALAERLADE-SRLRNELKPQELGNALNALSKWADTPVCAAAASALAERLVDD-PGLR  283 (2710)
T ss_pred             HHHHHHHHHhcCCCChhHHHHHHHHHHHHcCc-HHHHHhCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhh-HHHH
Confidence            45556666653 33333344555555544433 233334444454444445555566334444444444556643 4444


Q ss_pred             HHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHH-Hhh
Q 014945          151 RVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS-NFC  228 (415)
Q Consensus       151 ~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~-~l~  228 (415)
                      ..+-..+ +...++-|+ -++..+-..|...|..=..+++..+..+ ..-.+...++-|.+-++..+.+.+..+|. .++
T Consensus       284 ~al~~q~-vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~  361 (2710)
T PRK14707        284 KALDPIN-VTQALNALSKWADLPVCAEAAIALAERLADDPELCKAL-NARGLSTALNALSKWPDNPVCAAAVSALAERLV  361 (2710)
T ss_pred             HhcCHHH-HHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHHHHHHhc
Confidence            4443333 333334343 3777777777776665555565554333 33345666777767676666655555554 454


Q ss_pred             hCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHH
Q 014945          229 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG  308 (415)
Q Consensus       229 ~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~  308 (415)
                      ............++-..|..+-+-++..+...+...|..=..++.+..+.+-..|+-..|-.+-+-++..+...+...|+
T Consensus       362 ~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA  441 (2710)
T PRK14707        362 ADPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALA  441 (2710)
T ss_pred             cCHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHH
Confidence            44333333333455555555556678777777777776655555555444444455555555555677777777777776


Q ss_pred             HhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHH-HHHH
Q 014945          309 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFE-IKKE  387 (415)
Q Consensus       309 nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~-v~~~  387 (415)
                      --...+.+..+.+-..++...|-.+-+.+ +..+...++..|..=....++..+.+-..++...|-.+-+.++.. ....
T Consensus       442 ~~la~d~~l~~~~~p~~va~~LnalSKWP-d~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A  520 (2710)
T PRK14707        442 GRLAHDTELCKALDPINVTQALDALSKWP-DTPICGQTASALAARLAHERRLRKALKPQEVVIALHSLSKWPDTPICAEA  520 (2710)
T ss_pred             HHHhccHHHHhhcChHHHHHHHHHhhcCC-CChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHH
Confidence            66555554444333335555555566777 777887777777655555566555555555666666666666644 4444


Q ss_pred             HHHHHHHHh
Q 014945          388 AAWAISNAT  396 (415)
Q Consensus       388 a~~aL~nl~  396 (415)
                      +.|.-..+.
T Consensus       521 ~~~lA~rl~  529 (2710)
T PRK14707        521 ASALAERVV  529 (2710)
T ss_pred             HHHHHHHhc
Confidence            555555544

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=96.34  E-value=0.2  Score=46.63  Aligned_cols=141  Identities=13%  Similarity=0.206  Sum_probs=103.9

Q ss_pred             CchhHHHh-cCchHHHHHhhcCCCC--hHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhC-C---CCHHHHHHH
Q 014945          105 PPINEVIQ-SGVVPRFIEFLSRDDF--PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS-S---PTDDVREQA  177 (415)
Q Consensus       105 ~~~~~~~~-~g~i~~L~~ll~~~~~--~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~---~~~~v~~~a  177 (415)
                      ...+.+++ +.++..|...+++...  +.+-..|+.++..+....|..-..+.+.|+++.+++.+. .   ++.++....
T Consensus        96 ~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~l  175 (379)
T PF06025_consen   96 DRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSL  175 (379)
T ss_pred             cccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHH
Confidence            33445666 6667777788877542  688899999999999988999999999999999999887 4   567777777


Q ss_pred             HHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhH------hHHHHHHHHHHHhhhCCCCCchhhhhchHHHH
Q 014945          178 VWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKL------SMLRNATWTLSNFCRGKPQPLFEQTRPALPAL  246 (415)
Q Consensus       178 ~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~------~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l  246 (415)
                      -.+|+.||-+... .+.+.+.+.++.++.++.+....      +.....-..+-.|.++.|......+..++..+
T Consensus       176 P~~l~AicLN~~G-l~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~~ii~~l  249 (379)
T PF06025_consen  176 PNVLSAICLNNRG-LEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIIDAIIKIL  249 (379)
T ss_pred             HHHHhHHhcCHHH-HHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            8888889887774 57788889999999998433322      34455566677788877665555444444433

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=96.30  E-value=0.0052  Score=34.10  Aligned_cols=30  Identities=27%  Similarity=0.422  Sum_probs=26.0

Q ss_pred             ChHHHHHHhcCCCccchHHHHHHHHHHHhcC
Q 014945          326 ALPCLLDLLTQNYKKSIKKEACWTISNITAG  356 (415)
Q Consensus       326 ~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~  356 (415)
                      ++|.+.++++++ +++||..|+++|+.++.+
T Consensus         1 llp~l~~~l~D~-~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDP-SPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-S-SHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCC-CHHHHHHHHHHHHHHHhh
Confidence            378999999999 999999999999999753

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=96.18  E-value=0.11  Score=52.65  Aligned_cols=187  Identities=14%  Similarity=0.102  Sum_probs=131.1

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhh
Q 014945          160 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT  239 (415)
Q Consensus       160 ~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~  239 (415)
                      +.+..-+.+++..-+-.|+..+..+..... ........|.+..++.....+.|..+...++.+|..++..-........
T Consensus       256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~  334 (815)
T KOG1820|consen  256 KNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA  334 (815)
T ss_pred             hHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH
Confidence            344444556677778888888887776554 1111112334555666666778999999999999999987655555666


Q ss_pred             hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChH-HH
Q 014945          240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM-QT  318 (415)
Q Consensus       240 ~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~-~~  318 (415)
                      ...+|.+++-+......++..+..++-.++....       -..+.+.+...+.+.++.++..+...+.......+. ..
T Consensus       335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~  407 (815)
T KOG1820|consen  335 KNVFPSLLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTV  407 (815)
T ss_pred             HhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCc
Confidence            7888999999888877777666666655443221       123568888999999999999988888877765441 11


Q ss_pred             HHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc
Q 014945          319 QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA  355 (415)
Q Consensus       319 ~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~  355 (415)
                      ..---.+++|.++....+. +..||..|..+++-+..
T Consensus       408 ~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k  443 (815)
T KOG1820|consen  408 EKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMK  443 (815)
T ss_pred             chhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHH
Confidence            1112236788899999888 99999999999988775

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=96.17  E-value=0.15  Score=44.05  Aligned_cols=100  Identities=17%  Similarity=0.138  Sum_probs=84.4

Q ss_pred             hhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHh
Q 014945          298 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL  377 (415)
Q Consensus       298 ~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l  377 (415)
                      .....|++.|.-++--.+.....+-....+..++.++.....+.++..+..+|..+...++.+...+-+.+++..++.++
T Consensus       106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll  185 (257)
T PF08045_consen  106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL  185 (257)
T ss_pred             HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence            35666888888888877777787888899999999996554789999999999999999999999888999999999999


Q ss_pred             ccC--CHHHHHHHHHHHHHHhC
Q 014945          378 LNA--EFEIKKEAAWAISNATS  397 (415)
Q Consensus       378 ~~~--~~~v~~~a~~aL~nl~~  397 (415)
                      ++.  +.+++..++..|.-...
T Consensus       186 k~~~~~~~~r~K~~EFL~fyl~  207 (257)
T PF08045_consen  186 KSKSTDRELRLKCIEFLYFYLM  207 (257)
T ss_pred             ccccccHHHhHHHHHHHHHHHc
Confidence            974  56788888888877663

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=96.15  E-value=0.37  Score=44.85  Aligned_cols=216  Identities=13%  Similarity=0.188  Sum_probs=133.1

Q ss_pred             HHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHH---HhcC--CC-chhHHHHHhcCChHHHHHH
Q 014945          134 EAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALG---NVAG--DS-PKCRDLVLSNGALMPLLAQ  207 (415)
Q Consensus       134 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~---nl~~--~~-~~~~~~~~~~g~i~~L~~~  207 (415)
                      .|+.+|-.+....+.....+.+.+++..++..+..+-       -.++.   +...  .. ++.+.....       -..
T Consensus         3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev-------~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~   68 (379)
T PF06025_consen    3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEV-------DFALEENKNEEAGSGIPPEYKESSVD-------GYS   68 (379)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHH-------HHHHhcccccCCCCCCCCCccccccc-------ccc
Confidence            4667777777776777788888999999998885421       12222   1110  00 111000000       000


Q ss_pred             hccchhHhHHHHHHHHHHHhhh-CC-CCCch-hhh--hchHHHHHHhhcCC---ChhHHHHHHHHHHHhccCChHHHHHH
Q 014945          208 FNEHAKLSMLRNATWTLSNFCR-GK-PQPLF-EQT--RPALPALERLIHSN---DDEVLTDACWALSYLSDGTNDKIQAV  279 (415)
Q Consensus       208 l~~~~~~~~~~~a~~~l~~l~~-~~-~~~~~-~~~--~~~l~~l~~lL~~~---d~~v~~~a~~~l~~l~~~~~~~~~~~  279 (415)
                      + ......+.+..+.++..+.. .. ..... ..+  ..++..|...+++.   -+.+...|+..+..+..+++.....+
T Consensus        69 i-~~~r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l  147 (379)
T PF06025_consen   69 I-SYQRQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSIL  147 (379)
T ss_pred             c-CHHHHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHH
Confidence            1 11223344555555555555 22 11111 112  34455666677665   37899999999999999999888989


Q ss_pred             HHcCcHHHHHHhcC-C---CChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccc--hHH-HHHHHHH-
Q 014945          280 IEAGVCPRLVELLR-H---PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS--IKK-EACWTIS-  351 (415)
Q Consensus       280 ~~~~~i~~L~~lL~-~---~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~--v~~-~a~~~l~-  351 (415)
                      .+.|+++.+++.+. .   ++.++....-.+++.||-... ..+.+.+.+.++.+++++.++ +.-  .+. +.+..++ 
T Consensus       148 ~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~-Gl~~~~~~~~l~~~f~if~s~-~~~~~l~~~d~a~~lG~  225 (379)
T PF06025_consen  148 QEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNR-GLEKVKSSNPLDKLFEIFTSP-DYVKALRRRDTASNLGN  225 (379)
T ss_pred             HHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHH-HHHHHHhcChHHHHHHHhCCH-HHHHHhcccchHHHHHH
Confidence            99999999999887 3   345677777788999998654 677788899999999999877 321  111 3444444 


Q ss_pred             ---HHhcCCHHHHHHHHH
Q 014945          352 ---NITAGNVNQIQAIIE  366 (415)
Q Consensus       352 ---nl~~~~~~~~~~l~~  366 (415)
                         .+..+.|.-...+++
T Consensus       226 ~~DEL~RH~p~Lk~~i~~  243 (379)
T PF06025_consen  226 SFDELMRHHPSLKPDIID  243 (379)
T ss_pred             HHHHHHccCHHHHHHHHH
Confidence               455566665555444

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=96.13  E-value=0.063  Score=43.28  Aligned_cols=146  Identities=10%  Similarity=0.080  Sum_probs=89.0

Q ss_pred             chHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHH
Q 014945          115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL  194 (415)
Q Consensus       115 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~  194 (415)
                      +++.|+++|+.+.+..+|.+++++|+.|..-+|...+.+...  .+.-.  -...+........... ++....    +.
T Consensus        11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~~~~--~~~~~~~~~~~~l~~~-~~~~~~----ee   81 (160)
T PF11865_consen   11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS--LDSKS--SENSNDESTDISLPMM-GISPSS----EE   81 (160)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc--CCccc--cccccccchhhHHhhc-cCCCch----HH
Confidence            578888999887668999999999999998766544432221  11000  0111111222222111 111111    23


Q ss_pred             HHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 014945          195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS  269 (415)
Q Consensus       195 ~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~  269 (415)
                      ..-..++..|++.|++..-..-...++.++.++..............++|.++..+++.++..++...+-++.+.
T Consensus        82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv  156 (160)
T PF11865_consen   82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV  156 (160)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            333346788899885544444555677777777765544446777889999999998777787777776666554

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=96.11  E-value=0.35  Score=47.46  Aligned_cols=141  Identities=14%  Similarity=0.178  Sum_probs=99.3

Q ss_pred             chhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhc-CCCChhhHHHHHHHHHHhhcC
Q 014945          235 LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTG  313 (415)
Q Consensus       235 ~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~l~nl~~~  313 (415)
                      .......++|.|...+++.+..++..++..+..+++.-+.   .+++.-++|++..+. .+.+..++..++-|++.++..
T Consensus       383 ~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~---~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~  459 (700)
T KOG2137|consen  383 PEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV---PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR  459 (700)
T ss_pred             hHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH---HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH
Confidence            3445578889888999999999999999999988876552   255566788888774 566789999999999999843


Q ss_pred             ChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHH
Q 014945          314 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI  384 (415)
Q Consensus       314 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v  384 (415)
                      -+.  ..++  ..+..+.+..+.. ++.+......+.-++....+.. ..++...++|.++-+...+...+
T Consensus       460 lD~--~~v~--d~~lpi~~~~~~~-dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~L~~  524 (700)
T KOG2137|consen  460 LDK--AAVL--DELLPILKCIKTR-DPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPSLNG  524 (700)
T ss_pred             HHH--HHhH--HHHHHHHHHhcCC-CcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhcccccH
Confidence            221  1122  2355566666777 8888888888777777643332 34455568888888776654333

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=96.11  E-value=0.88  Score=43.05  Aligned_cols=260  Identities=13%  Similarity=0.134  Sum_probs=146.2

Q ss_pred             HHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCC-
Q 014945           90 DATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-  168 (415)
Q Consensus        90 ~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-  168 (415)
                      .+-..|..++......+.+..++..++..|+.+++++| +.-|...-.+|.++-......+..+.. .+...+.+++.. 
T Consensus       109 ~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D-~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~  186 (409)
T PF01603_consen  109 LVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPD-PRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYET  186 (409)
T ss_dssp             HHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCc
Confidence            34455555554332223444667778999999999999 999999999998877655556555544 455667777664 


Q ss_pred             CCHHHHHHHHHHHHHhcCCCc-hhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHH
Q 014945          169 PTDDVREQAVWALGNVAGDSP-KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALE  247 (415)
Q Consensus       169 ~~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~  247 (415)
                      ....-...++..++.+..+-. ..+..... =....++.+.....-.........++..++..++...    ..++..++
T Consensus       187 ~~~~gI~elLeil~sii~gf~~plk~eh~~-fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~----~~~i~~ll  261 (409)
T PF01603_consen  187 ERHNGIAELLEILGSIINGFAVPLKEEHKQ-FLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLA----EPVIKGLL  261 (409)
T ss_dssp             S--STHHHHHHHHHHHHTT--SS--HHHHH-HHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGH----HHHHHHHH
T ss_pred             ccccCHHHHHHHHHHHHhccCCCCcHHHHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhH----HHHHHHHH
Confidence            344456678888888876522 12222111 0122334444222333445666666666665543221    22333333


Q ss_pred             HhhcCCChhHHHHHHHHHHHhccCCh-HHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHC--
Q 014945          248 RLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH--  324 (415)
Q Consensus       248 ~lL~~~d~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~--  324 (415)
                      ..=-..+..-..--+.-+..+...-+ .... -+...+...+...+.+++..|.+.|+....|     +... .++..  
T Consensus       262 k~WP~t~s~Kev~FL~el~~il~~~~~~~f~-~i~~~lf~~la~ci~S~h~qVAErAl~~w~n-----~~~~-~li~~~~  334 (409)
T PF01603_consen  262 KHWPKTNSQKEVLFLNELEEILEVLPPEEFQ-KIMVPLFKRLAKCISSPHFQVAERALYFWNN-----EYFL-SLISQNS  334 (409)
T ss_dssp             HHS-SS-HHHHHHHHHHHHHHHTT--HHHHH-HHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS-----HHHH-HHHHCTH
T ss_pred             HhCCCCCchhHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC-----HHHH-HHHHhCh
Confidence            33333444434444445555554332 2222 2223467888888899999999999866533     2222 23322  


Q ss_pred             -CChHHHHHHhcCC----CccchHHHHHHHHHHHhcCCHHHHHH
Q 014945          325 -QALPCLLDLLTQN----YKKSIKKEACWTISNITAGNVNQIQA  363 (415)
Q Consensus       325 -~~l~~L~~ll~~~----~~~~v~~~a~~~l~nl~~~~~~~~~~  363 (415)
                       .++|.+..-+...    =+..|+..|..++.-+..-++...+.
T Consensus       335 ~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~  378 (409)
T PF01603_consen  335 RVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDK  378 (409)
T ss_dssp             HHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHH
Confidence             3577777766432    15689999999999998877775544

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=96.09  E-value=0.23  Score=48.43  Aligned_cols=143  Identities=18%  Similarity=0.172  Sum_probs=107.1

Q ss_pred             chHHHHHhhcC----CCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhcCCCc
Q 014945          115 VVPRFIEFLSR----DDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSP  189 (415)
Q Consensus       115 ~i~~L~~ll~~----~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~nl~~~~~  189 (415)
                      +-|...+...+    ++ +.++..|.-+|..+..-+.++..     ..+|.|+..+. +++|.++..|+-.+|.++..-.
T Consensus       893 F~pvVeE~csn~~~~sd-~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN  966 (1128)
T COG5098         893 FKPVVEEGCSNSSRFSD-EELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFN  966 (1128)
T ss_pred             hhHHHHHHhccccccCC-HHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehh
Confidence            44555555555    34 89999999999988775555443     35899999887 7999999999999998875433


Q ss_pred             hhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 014945          190 KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS  269 (415)
Q Consensus       190 ~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~  269 (415)
                      ...+.     .-..|.+.| .+.+..+++.+..++.+|....    ...+.|-++.++.+|.++|..+..-|-..+..++
T Consensus       967 ~~~de-----~t~yLyrrL-~De~~~V~rtclmti~fLilag----q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a 1036 (1128)
T COG5098         967 TTADE-----HTHYLYRRL-GDEDADVRRTCLMTIHFLILAG----QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIA 1036 (1128)
T ss_pred             hhhHH-----HHHHHHHHh-cchhhHHHHHHHHHHHHHHHcc----ceeeccchhhhHhhccCCcchHHHHHHHHHHHHH
Confidence            32222     345677777 7788999999999999988653    2344688899999999999998877777777777


Q ss_pred             cCCh
Q 014945          270 DGTN  273 (415)
Q Consensus       270 ~~~~  273 (415)
                      ..+.
T Consensus      1037 ~KdN 1040 (1128)
T COG5098        1037 KKDN 1040 (1128)
T ss_pred             hccc
Confidence            6544

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=96.07  E-value=0.94  Score=40.01  Aligned_cols=203  Identities=12%  Similarity=0.110  Sum_probs=130.4

Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchh----HHHHHhcCChHHHHHHhccch-hHhHHHHHHHHHH
Q 014945          151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC----RDLVLSNGALMPLLAQFNEHA-KLSMLRNATWTLS  225 (415)
Q Consensus       151 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~----~~~~~~~g~i~~L~~~l~~~~-~~~~~~~a~~~l~  225 (415)
                      ..+.++|.+..++..+..-+-+-+..++.+..|+-...-+.    .+.+..  -.+.+-.++.... .+++.-++...+.
T Consensus        73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t--~~e~~~~lv~~~~~~~~iaL~cg~mlr  150 (342)
T KOG1566|consen   73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLET--NPEILDNLVKGYENTPEIALTCGNMLR  150 (342)
T ss_pred             HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHh--CHHHHHHHHhhhccchHHHHHHHHHHH
Confidence            34567788999999998877777777777777775332211    222221  2223333332222 2444444444444


Q ss_pred             HhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCc----HHHHHHhcCCCChhhHH
Q 014945          226 NFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV----CPRLVELLRHPSPSVLI  301 (415)
Q Consensus       226 ~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~----i~~L~~lL~~~~~~v~~  301 (415)
                      ...++..-........-+......++.+.-++..+|..++..+.......+..++..+.    .+.--.++.+.+.-++.
T Consensus       151 Ecirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkr  230 (342)
T KOG1566|consen  151 ECIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKR  230 (342)
T ss_pred             HHHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHH
Confidence            44444322222333455556666777777889999999998887554444444554433    33356667888888999


Q ss_pred             HHHHHHHHhhcCCh---HHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcC
Q 014945          302 PALRTVGNIVTGDD---MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG  356 (415)
Q Consensus       302 ~a~~~l~nl~~~~~---~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~  356 (415)
                      .++..+|.+..+.+   ..++++-...-+..++.+|.++ +..++-+|..+..-+.++
T Consensus       231 qs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdk-skniQ~eAFhvFKvfvAn  287 (342)
T KOG1566|consen  231 QSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDK-SKNIQLEAFHVFKVFVAN  287 (342)
T ss_pred             HHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCc-cccchHHHHHHHHHHhcC
Confidence            99999999987654   2334444446788999999999 999999999999888873

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=96.07  E-value=0.021  Score=45.92  Aligned_cols=148  Identities=20%  Similarity=0.171  Sum_probs=97.4

Q ss_pred             ChHHHHHHhcc-chhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHH
Q 014945          200 ALMPLLAQFNE-HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA  278 (415)
Q Consensus       200 ~i~~L~~~l~~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~  278 (415)
                      .+..++..|.. ....+++..++-++..+..   .........+-+.+...+...+.+-...++.++..+-...++....
T Consensus         4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~---~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~   80 (157)
T PF11701_consen    4 ELDTLLTSLDMLRQPEEVRSHALVILSKLLD---AAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE   80 (157)
T ss_dssp             CCCHHHHHHHCTTTSCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred             HHHHHHHHhcccCCCHhHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence            34455666533 4567788888888887741   1111222333445555555555556677888888888887765544


Q ss_pred             H-HHcCcHHHHHHhcC--CCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccc-hHHHHHHHHHH
Q 014945          279 V-IEAGVCPRLVELLR--HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS-IKKEACWTISN  352 (415)
Q Consensus       279 ~-~~~~~i~~L~~lL~--~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~-v~~~a~~~l~n  352 (415)
                      + ...|+++.+..+..  ..+..+...++.+|..-|. .... ...+...+++.|-..++.++++. +|..|+-+|.-
T Consensus        81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~-d~~~-r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI-DKSC-RTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT-SHHH-HHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc-cHHH-HHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            4 46699999999998  7788889999999877665 3334 44555578899999996553566 88888877753

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=96.00  E-value=0.24  Score=46.73  Aligned_cols=253  Identities=12%  Similarity=0.065  Sum_probs=144.6

Q ss_pred             HHHHHHHHHhCCCchh-hHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccch
Q 014945          134 EAAWALTNIASGTSEN-TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA  212 (415)
Q Consensus       134 ~a~~~L~~l~~~~~~~-~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~  212 (415)
                      .+-..|..+....+.. ....++...+..|+.+++++|+.-|+....+|.++.+.-+..|..+.. .....+.+.+....
T Consensus       109 ~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~  187 (409)
T PF01603_consen  109 LVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETE  187 (409)
T ss_dssp             HHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCcc
Confidence            3444555554432221 222344456888999999999999999999999987655555555544 24556666664455


Q ss_pred             hHhHHHHHHHHHHHhhhCCCCC-chhhhhchHHHHHHhhcCCC-hhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHH
Q 014945          213 KLSMLRNATWTLSNFCRGKPQP-LFEQTRPALPALERLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE  290 (415)
Q Consensus       213 ~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~l~~l~~lL~~~d-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~  290 (415)
                      ...-...++..++.+..+...+ ......-+...++.+...+. .........++..++..++.....     ++..++.
T Consensus       188 ~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~-----~i~~llk  262 (409)
T PF01603_consen  188 RHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEP-----VIKGLLK  262 (409)
T ss_dssp             --STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHH-----HHHHHHH
T ss_pred             cccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHH-----HHHHHHH
Confidence            6667788888888888875322 23333344456666666554 233455555555555555444332     2333444


Q ss_pred             hcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHc---
Q 014945          291 LLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEA---  367 (415)
Q Consensus       291 lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~---  367 (415)
                      .=-..+..=...-+.-+..+....+...-.-+..-+...+...+++. +..|.+.|+....|     +. +-.++..   
T Consensus       263 ~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~-h~qVAErAl~~w~n-----~~-~~~li~~~~~  335 (409)
T PF01603_consen  263 HWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSP-HFQVAERALYFWNN-----EY-FLSLISQNSR  335 (409)
T ss_dssp             HS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHGGGGS-----HH-HHHHHHCTHH
T ss_pred             hCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHCC-----HH-HHHHHHhChH
Confidence            43334444445566667777664432222222335677888888888 88888888766532     11 2222221   


Q ss_pred             CCHHHHHHHhcc-----CCHHHHHHHHHHHHHHhCCC
Q 014945          368 GIIGPLVNLLLN-----AEFEIKKEAAWAISNATSGG  399 (415)
Q Consensus       368 ~~i~~L~~~l~~-----~~~~v~~~a~~aL~nl~~~~  399 (415)
                      .++|.+...+..     =+..|+..|..++.-+....
T Consensus       336 ~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d  372 (409)
T PF01603_consen  336 VILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMD  372 (409)
T ss_dssp             HHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence            156666666543     14679999999998888763

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.97  E-value=0.63  Score=45.60  Aligned_cols=113  Identities=18%  Similarity=0.180  Sum_probs=82.5

Q ss_pred             CchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 014945          105 PPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV  184 (415)
Q Consensus       105 ~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl  184 (415)
                      +....++ .|++..+++...+.+ ..+|+.++.+|..+.....+.-+.+.+ +....+..-+.+..+.|+.+|+.+|+.+
T Consensus        77 d~e~DlV-~~~f~hlLRg~Eskd-k~VRfrvlqila~l~d~~~eidd~vfn-~l~e~l~~Rl~Drep~VRiqAv~aLsrl  153 (892)
T KOG2025|consen   77 DKEEDLV-AGTFYHLLRGTESKD-KKVRFRVLQILALLSDENAEIDDDVFN-KLNEKLLIRLKDREPNVRIQAVLALSRL  153 (892)
T ss_pred             CchhhHH-HHHHHHHHhcccCcc-hhHHHHHHHHHHHHhccccccCHHHHH-HHHHHHHHHHhccCchHHHHHHHHHHHH
Confidence            3333443 356778888888888 899999999999998854444444443 5666666666677889999999999999


Q ss_pred             cCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHH
Q 014945          185 AGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS  225 (415)
Q Consensus       185 ~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~  225 (415)
                      -++...-     +..+...+..+++++++.++++.++..+.
T Consensus       154 Q~d~~de-----e~~v~n~l~~liqnDpS~EVRRaaLsnI~  189 (892)
T KOG2025|consen  154 QGDPKDE-----ECPVVNLLKDLIQNDPSDEVRRAALSNIS  189 (892)
T ss_pred             hcCCCCC-----cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence            8544321     23366788888888899999998776544

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=95.93  E-value=0.089  Score=43.79  Aligned_cols=111  Identities=16%  Similarity=0.164  Sum_probs=77.5

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCC--------CChHHHHHHHHHHHHHh
Q 014945           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD--------DFPQLQFEAAWALTNIA  143 (415)
Q Consensus        72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~--------~~~~i~~~a~~~L~~l~  143 (415)
                      ....+++.+.+.....  ..+..|+..+......-++.+++.|++..|+.+|..-        ........++.||..|.
T Consensus        67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~  144 (187)
T PF06371_consen   67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM  144 (187)
T ss_dssp             HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence            3456778887655432  4455555555543223356788889999999887631        12578899999999988


Q ss_pred             CCCchhhHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 014945          144 SGTSENTRVVID-HGAVPIFVRLLSSPTDDVREQAVWALGNVA  185 (415)
Q Consensus       144 ~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~  185 (415)
                      .. ......+++ .+++..++..|.+++..++..++..|+.+|
T Consensus       145 n~-~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  145 NT-KYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             SS-HHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             cc-HHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            75 455666665 688999999999999999999999998876

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=95.92  E-value=1.1  Score=39.47  Aligned_cols=225  Identities=14%  Similarity=0.106  Sum_probs=138.3

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhcc-chhHhHHHHHHHHHHHhhhCCCCCchhhh
Q 014945          161 IFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE-HAKLSMLRNATWTLSNFCRGKPQPLFEQT  239 (415)
Q Consensus       161 ~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~  239 (415)
                      .|-..|.++++.+|..|+.+|+.+...-+..  . +...-+..|+..+.+ -.|......++.++..|...+ .......
T Consensus         3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~--~-L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~-~~~~~~~   78 (262)
T PF14500_consen    3 SLGEYLTSEDPIIRAKALELLSEVLERLPPD--F-LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMK-NFSPESA   78 (262)
T ss_pred             chhhhhCCCCHHHHHHHHHHHHHHHHhCCHh--h-ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCc-CCChhhH
Confidence            4556788899999999999999987665521  1 222235555555422 135555666677777777543 2222223


Q ss_pred             hchHHHHHHhhcC--CChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCC-CChhhHHHHHHHHHHhhcCChH
Q 014945          240 RPALPALERLIHS--NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDM  316 (415)
Q Consensus       240 ~~~l~~l~~lL~~--~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~l~nl~~~~~~  316 (415)
                      ..++..+.+..+.  .....|..+...+..+.....+.... ...+++..+++.... .||.-...+...+..+....+.
T Consensus        79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~-~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~  157 (262)
T PF14500_consen   79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQS-MGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI  157 (262)
T ss_pred             HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHh-chhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence            4444454443332  24667888888888887665443321 223567777777754 4777777777777777665441


Q ss_pred             HHHHHHHCCChHHHHHHhc--------CCC-cc--chHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHH
Q 014945          317 QTQCIINHQALPCLLDLLT--------QNY-KK--SIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIK  385 (415)
Q Consensus       317 ~~~~~~~~~~l~~L~~ll~--------~~~-~~--~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~  385 (415)
                             ....+.+.+.+.        .+. ++  -.+..-...|.+....++....     -.+|.|++-|.++.+.++
T Consensus       158 -------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~-----~~~p~LleKL~s~~~~~K  225 (262)
T PF14500_consen  158 -------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAP-----FAFPLLLEKLDSTSPSVK  225 (262)
T ss_pred             -------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHH-----HHHHHHHHHHcCCCcHHH
Confidence                   122333333331        111 22  3455666667766665554322     268999999999999999


Q ss_pred             HHHHHHHHHHhCCCCHH
Q 014945          386 KEAAWAISNATSGGSNE  402 (415)
Q Consensus       386 ~~a~~aL~nl~~~~~~~  402 (415)
                      ..++.+|..++..-+..
T Consensus       226 ~D~L~tL~~c~~~y~~~  242 (262)
T PF14500_consen  226 LDSLQTLKACIENYGAD  242 (262)
T ss_pred             HHHHHHHHHHHHHCCHH
Confidence            99999999998654443

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=95.84  E-value=3.3  Score=44.46  Aligned_cols=80  Identities=13%  Similarity=0.158  Sum_probs=54.1

Q ss_pred             hhHHHHHHHHHHhhcCCh-----------HHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHH
Q 014945          298 SVLIPALRTVGNIVTGDD-----------MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE  366 (415)
Q Consensus       298 ~v~~~a~~~l~nl~~~~~-----------~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~  366 (415)
                      ......+.++|-++...+           .+....+..+++..|..+.++. +..+|..|...++.+|...+.   .+.+
T Consensus      1187 p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~-~~~lR~~al~~Lg~~ci~hp~---l~~~ 1262 (1692)
T KOG1020|consen 1187 PKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDK-DGELRRKALINLGFICIQHPS---LFTS 1262 (1692)
T ss_pred             HHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHhhCch---hhhh
Confidence            456678889998887321           1112234457778888888888 899999999999999985554   3444


Q ss_pred             cCCHHHHHHHhccCC
Q 014945          367 AGIIGPLVNLLLNAE  381 (415)
Q Consensus       367 ~~~i~~L~~~l~~~~  381 (415)
                      ..+...+...+.+.+
T Consensus      1263 ~~v~nly~~ila~~n 1277 (1692)
T KOG1020|consen 1263 REVLNLYDEILADDN 1277 (1692)
T ss_pred             HHHHHHHHHHHhhhc
Confidence            445555666666543

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=95.84  E-value=0.086  Score=42.40  Aligned_cols=136  Identities=20%  Similarity=0.176  Sum_probs=91.8

Q ss_pred             CCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHH-HCCChHHH
Q 014945          252 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII-NHQALPCL  330 (415)
Q Consensus       252 ~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~-~~~~l~~L  330 (415)
                      ...++++..+.-++..+-+.    ...-...-+-+.+-..+...+.+-...++.+++.+-.+.++....++ ..|+++.+
T Consensus        16 ~~~~~~r~~a~v~l~k~l~~----~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l   91 (157)
T PF11701_consen   16 RQPEEVRSHALVILSKLLDA----AREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESL   91 (157)
T ss_dssp             TTSCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHH
T ss_pred             CCCHhHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHH
Confidence            35677888888888777411    11122223344555555555556778888999999998887776666 55999999


Q ss_pred             HHHhc--CCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc-CCHH-HHHHHHHHHHH
Q 014945          331 LDLLT--QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFE-IKKEAAWAISN  394 (415)
Q Consensus       331 ~~ll~--~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~-~~~~-v~~~a~~aL~n  394 (415)
                      ..++.  .. +..+...++.+++.-|. +...+.. +..++++.|-+.++. ++.. ++..|+-+|+.
T Consensus        92 ~~~~~~~~~-~~~~~~~~lell~aAc~-d~~~r~~-I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   92 LPLASRKSK-DRKVQKAALELLSAACI-DKSCRTF-ISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HHHHH-CTS--HHHHHHHHHHHHHHTT-SHHHHHC-CHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHHHhcccC-CHHHHHHHHHHHHHHHc-cHHHHHH-HHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            99998  55 77777777777766654 4554444 444489999999964 5455 78888877764

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=95.83  E-value=0.03  Score=54.33  Aligned_cols=183  Identities=15%  Similarity=0.168  Sum_probs=120.3

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (415)
Q Consensus        72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  151 (415)
                      .+|.+++++.+.|..+|..=+..+-++.    ....+.+++.-++|.+..-+.+.+ +.++.+++.++..++.-=.   .
T Consensus       331 i~p~l~kLF~~~Dr~iR~~LL~~i~~~i----~~Lt~~~~~d~I~phv~~G~~DTn-~~Lre~Tlksm~~La~kL~---~  402 (690)
T KOG1243|consen  331 IIPVLLKLFKSPDRQIRLLLLQYIEKYI----DHLTKQILNDQIFPHVALGFLDTN-ATLREQTLKSMAVLAPKLS---K  402 (690)
T ss_pred             hhhhHHHHhcCcchHHHHHHHHhHHHHh----hhcCHHhhcchhHHHHHhhcccCC-HHHHHHHHHHHHHHHhhhc---h
Confidence            4677888888888877776666665553    233455667778888888888887 8888888888887775211   1


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCC-CchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhC
Q 014945          152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD-SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  230 (415)
Q Consensus       152 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~  230 (415)
                      ...+...+..+-++-.+++..++....-||+.++.. .+..|+.+    ...++.+.+ .++-...+..+.+++...+..
T Consensus       403 ~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~v----L~~aftral-kdpf~paR~a~v~~l~at~~~  477 (690)
T KOG1243|consen  403 RNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRV----LASAFTRAL-KDPFVPARKAGVLALAATQEY  477 (690)
T ss_pred             hhhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhccc----cchhhhhhh-cCCCCCchhhhhHHHhhcccc
Confidence            133334455555555556677888888888888765 33333333    233455545 555566677777777766654


Q ss_pred             CCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 014945          231 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS  269 (415)
Q Consensus       231 ~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~  269 (415)
                        -........++|.+..+.-+++..++..+..++...-
T Consensus       478 --~~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl  514 (690)
T KOG1243|consen  478 --FDQSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFL  514 (690)
T ss_pred             --cchhhhhhhccccccccccCcccchhhHHHHHHHHHH
Confidence              3334455678888888888888888888777665543

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=95.83  E-value=2.3  Score=43.48  Aligned_cols=238  Identities=18%  Similarity=0.216  Sum_probs=137.5

Q ss_pred             hcCchHHHHHhhcCCC----ChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhC----CCC----HHHHHHHHH
Q 014945          112 QSGVVPRFIEFLSRDD----FPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS----SPT----DDVREQAVW  179 (415)
Q Consensus       112 ~~g~i~~L~~ll~~~~----~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~----~~~----~~v~~~a~~  179 (415)
                      +.|++..++.++.+-.    ........+..|...+. -+.+++.+++.|+++.|+..+.    .+.    ..+.+..+.
T Consensus       115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~  193 (802)
T PF13764_consen  115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE  193 (802)
T ss_pred             cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence            5678888888887632    13444455666666665 4899999999999999998774    333    677888887


Q ss_pred             HHHHhcCCCchhHH----H-HHhcC-------ChHHHHHHhccc---hhHhHHHHHHHHHHHhhhCCCCCchhhhhchHH
Q 014945          180 ALGNVAGDSPKCRD----L-VLSNG-------ALMPLLAQFNEH---AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALP  244 (415)
Q Consensus       180 ~L~nl~~~~~~~~~----~-~~~~g-------~i~~L~~~l~~~---~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~  244 (415)
                      ++..+..+.....-    . ....|       .+..+++.+...   .++.+....+.+|-+|+.+....-...+..+-|
T Consensus       194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F~p  273 (802)
T PF13764_consen  194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHFKP  273 (802)
T ss_pred             HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHH
Confidence            77776543221000    0 01111       255666666422   367889999999999998854332222233333


Q ss_pred             HHHHhh--c---CCChhHHHHHHHHHHHhccC----C--hHHHHHHHHcCcHHHHHHhcCCC--------Chh-------
Q 014945          245 ALERLI--H---SNDDEVLTDACWALSYLSDG----T--NDKIQAVIEAGVCPRLVELLRHP--------SPS-------  298 (415)
Q Consensus       245 ~l~~lL--~---~~d~~v~~~a~~~l~~l~~~----~--~~~~~~~~~~~~i~~L~~lL~~~--------~~~-------  298 (415)
                      .+ ++=  .   ..+..+.   +.+++.++.+    .  ....+.+++.|++...+..|...        ++.       
T Consensus       274 ~l-~f~~~D~~~~~~~~~~---Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~  349 (802)
T PF13764_consen  274 YL-DFDKFDEEHSPDEQFK---LECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSR  349 (802)
T ss_pred             hc-ChhhcccccCchHHHH---HHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcC
Confidence            22 111  1   1112222   4444444432    1  24567788899999888887421        111       


Q ss_pred             -hHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc
Q 014945          299 -VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA  355 (415)
Q Consensus       299 -v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~  355 (415)
                       -...++..|.-++.+.. ..+..+..++++.+..+=+.+.+..+=.-|=.+|-.+..
T Consensus       350 psLp~iL~lL~GLa~gh~-~tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~  406 (802)
T PF13764_consen  350 PSLPYILRLLRGLARGHE-PTQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAE  406 (802)
T ss_pred             CcHHHHHHHHHHHHhcCH-HHHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence             23557788888888765 355567777886655555444233333333344444443

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=95.81  E-value=0.36  Score=47.19  Aligned_cols=190  Identities=11%  Similarity=0.057  Sum_probs=130.7

Q ss_pred             HhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHH
Q 014945          196 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK  275 (415)
Q Consensus       196 ~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~  275 (415)
                      ++.++++.+++++ ...+..++-..+.-+-.+...  -........++|.+...+.+.++.+++.++.++..++..-..+
T Consensus       327 yq~~i~p~l~kLF-~~~Dr~iR~~LL~~i~~~i~~--Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~  403 (690)
T KOG1243|consen  327 YQVRIIPVLLKLF-KSPDRQIRLLLLQYIEKYIDH--LTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR  403 (690)
T ss_pred             cccchhhhHHHHh-cCcchHHHHHHHHhHHHHhhh--cCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh
Confidence            4667889999999 777888877666655555543  2333455788999999999999999999999998887543322


Q ss_pred             HHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc
Q 014945          276 IQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA  355 (415)
Q Consensus       276 ~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~  355 (415)
                         .+....+..+..+=.+++..++.....|+|.++.......   .+.-+...+..-+.++ -..-|+.+.+++..-..
T Consensus       404 ---~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~---R~~vL~~aftralkdp-f~paR~a~v~~l~at~~  476 (690)
T KOG1243|consen  404 ---NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRALKDP-FVPARKAGVLALAATQE  476 (690)
T ss_pred             ---hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh---hccccchhhhhhhcCC-CCCchhhhhHHHhhccc
Confidence               2233344555555556677899999999999987643222   2222334455567777 67778888888876655


Q ss_pred             CCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945          356 GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG  398 (415)
Q Consensus       356 ~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~  398 (415)
                      ..+   ..=+...++|.++-+.-+++..++..|-.++..+...
T Consensus       477 ~~~---~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~k  516 (690)
T KOG1243|consen  477 YFD---QSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEK  516 (690)
T ss_pred             ccc---hhhhhhhccccccccccCcccchhhHHHHHHHHHHhh
Confidence            211   1123445788888888888888888888887766543

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=95.79  E-value=0.093  Score=35.69  Aligned_cols=62  Identities=23%  Similarity=0.309  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014945          343 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNATSGGSNEQIKYK  407 (415)
Q Consensus       343 ~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~l  407 (415)
                      .+.|.|+++++++. +.-+..+.+.++++.++++... +...+|-.|.++|+-++..  .+-.+.|
T Consensus         4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T--~~G~~~L   66 (73)
T PF14668_consen    4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST--EEGAEIL   66 (73)
T ss_pred             HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC--HHHHHHH
Confidence            57899999999884 5556667778999999999885 5578999999999999854  4444444

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=95.78  E-value=1.1  Score=38.83  Aligned_cols=203  Identities=17%  Similarity=0.198  Sum_probs=117.0

Q ss_pred             hHHHHH-hhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchh
Q 014945          159 VPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE  237 (415)
Q Consensus       159 i~~L~~-ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~  237 (415)
                      ++.|+. +-+..+++++...+.+|..++.....+...     ++..+..+. ..+.......+...+..+-...+ ..+ 
T Consensus         2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~-~~~~~~~~~~~~rLl~~lw~~~~-r~f-   73 (234)
T PF12530_consen    2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLV-EQGSLELRYVALRLLTLLWKAND-RHF-   73 (234)
T ss_pred             hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHH-cCCchhHHHHHHHHHHHHHHhCc-hHH-
Confidence            344444 444578899999999999999776212222     233444444 44444444445555555554421 112 


Q ss_pred             hhhchHHHHHHh--------hc--CCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhc-CCCChhhHHHHHHH
Q 014945          238 QTRPALPALERL--------IH--SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRT  306 (415)
Q Consensus       238 ~~~~~l~~l~~l--------L~--~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~  306 (415)
                         +.+..++..        ..  +...+.......++..+|...++.     ...+++.+..+| .+.++.++..++.+
T Consensus        74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~-----g~~ll~~ls~~L~~~~~~~~~alale~  145 (234)
T PF12530_consen   74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH-----GVDLLPLLSGCLNQSCDEVAQALALEA  145 (234)
T ss_pred             ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh-----HHHHHHHHHHHHhccccHHHHHHHHHH
Confidence               222222222        11  123445556567888888776652     224578888888 78888899999999


Q ss_pred             HHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcC--CHHHHHHHHHcCCHHHHHHHhccCCHH
Q 014945          307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG--NVNQIQAIIEAGIIGPLVNLLLNAEFE  383 (415)
Q Consensus       307 l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~--~~~~~~~l~~~~~i~~L~~~l~~~~~~  383 (415)
                      |..++...-....     .....+.+-+..++.+.+.+..|..+..+..+  +.+.- ......++..+.++..+.+.+
T Consensus       146 l~~Lc~~~vvd~~-----s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~-~~~~~~~l~~lW~~~~~~~~~  218 (234)
T PF12530_consen  146 LAPLCEAEVVDFY-----SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEY-EELKRQILQLLWEYTSSSDVN  218 (234)
T ss_pred             HHHHHHHhhccHH-----HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhh-hHHHHHHHHHHHhhccccccc
Confidence            9999943221111     23345555555555777777666666655553  22322 334455788888887776643

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=95.74  E-value=0.6  Score=43.31  Aligned_cols=276  Identities=18%  Similarity=0.159  Sum_probs=140.3

Q ss_pred             hHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHH-HHHhcCCCchhHH
Q 014945          116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWA-LGNVAGDSPKCRD  193 (415)
Q Consensus       116 i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~-L~nl~~~~~~~~~  193 (415)
                      +..++.=+.+.+...+|..++--|+.-+.+ ++++..+..+|....+++.+.. ++..+...++.+ +.-++.+.. .-.
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~-~~~  100 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL-NMH  100 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc-chh
Confidence            455666666444478898888888888774 9999999999999999999854 444344444444 444444443 334


Q ss_pred             HHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhc---------CCChhHHHHHHHH
Q 014945          194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH---------SNDDEVLTDACWA  264 (415)
Q Consensus       194 ~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~---------~~d~~v~~~a~~~  264 (415)
                      .+...+....++.++.-....+......      ... ...-..........+.+.+.         +....-+..++.+
T Consensus       101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~-~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~  173 (361)
T PF07814_consen  101 LLLDRDSLRLLLKLLKVDKSLDVPSDSD------SSR-KKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLA  173 (361)
T ss_pred             hhhchhHHHHHHHHhccccccccccchh------hhh-hhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence            4444445555566663000000000000      000 00000000111111111110         0111122233333


Q ss_pred             HHHhc--------------cCChHHHHHHHHcCcHHHHHHhcCC----C-------C-----hhhHHHHHHHHHHhhcCC
Q 014945          265 LSYLS--------------DGTNDKIQAVIEAGVCPRLVELLRH----P-------S-----PSVLIPALRTVGNIVTGD  314 (415)
Q Consensus       265 l~~l~--------------~~~~~~~~~~~~~~~i~~L~~lL~~----~-------~-----~~v~~~a~~~l~nl~~~~  314 (415)
                      +-.++              ...+...+.+...|+++.++..+..    .       .     -.....++++|-+.+..+
T Consensus       174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~  253 (361)
T PF07814_consen  174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS  253 (361)
T ss_pred             HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence            33331              1111223445566788888888741    1       1     124456888888888766


Q ss_pred             hHHHHHHHHC--CChHHHHHH-hcCC--CccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHH------h-c----
Q 014945          315 DMQTQCIINH--QALPCLLDL-LTQN--YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNL------L-L----  378 (415)
Q Consensus       315 ~~~~~~~~~~--~~l~~L~~l-l~~~--~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~------l-~----  378 (415)
                      +.....++..  +.++.+... +...  ....+...++..+.|++.++++....+...++...+..+      + .    
T Consensus       254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~  333 (361)
T PF07814_consen  254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNY  333 (361)
T ss_pred             ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhccccccccc
Confidence            6554445443  333333332 2222  033445678888999999887766666544332221111      1 1    


Q ss_pred             ---cCCHHHHHHHHHHHHHHhCCCC
Q 014945          379 ---NAEFEIKKEAAWAISNATSGGS  400 (415)
Q Consensus       379 ---~~~~~v~~~a~~aL~nl~~~~~  400 (415)
                         ....+...-++.+|.|+++..+
T Consensus       334 ~~~~~~~D~~IL~Lg~LINL~E~s~  358 (361)
T PF07814_consen  334 VPEESSFDILILALGLLINLVEHSE  358 (361)
T ss_pred             ccccccchHHHHHHHhHHHheeeCc
Confidence               1235677889999999998754

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=95.72  E-value=1.1  Score=38.11  Aligned_cols=176  Identities=14%  Similarity=0.111  Sum_probs=109.4

Q ss_pred             HHHHHHHHHhhhCCCCCchhhhhchHH-HHHHhhcC-----CChhHHHHHHHHHHHhccCC-hHHHHHHHHcCcHHHHHH
Q 014945          218 RNATWTLSNFCRGKPQPLFEQTRPALP-ALERLIHS-----NDDEVLTDACWALSYLSDGT-NDKIQAVIEAGVCPRLVE  290 (415)
Q Consensus       218 ~~a~~~l~~l~~~~~~~~~~~~~~~l~-~l~~lL~~-----~d~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~L~~  290 (415)
                      .+++..+--++.+ |.....+...-+| .+..+|..     +.+-.|-.+++.|+.+...+ ++.+..+..++++|..+.
T Consensus        97 cnaL~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr  175 (293)
T KOG3036|consen   97 CNALALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR  175 (293)
T ss_pred             HHHHHHHHHHhcC-cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence            4444444444444 5555555555455 34455543     35779999999999998654 466778888999999999


Q ss_pred             hcCCCChhhHHHHHHHHHHhhcCChHHHHHHH---H-----CCChH-HHHHHhcCCCccchHHHHHHHHHHHhcCCHHHH
Q 014945          291 LLRHPSPSVLIPALRTVGNIVTGDDMQTQCII---N-----HQALP-CLLDLLTQNYKKSIKKEACWTISNITAGNVNQI  361 (415)
Q Consensus       291 lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~---~-----~~~l~-~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~  361 (415)
                      .+..+++--+.-|..+++.|...+. ...++-   +     ...+. .+..+.+.+ ++++-+.+..+..+++.+ +..+
T Consensus       176 ime~GSelSKtvA~fIlqKIlldD~-GL~YiCqt~eRF~av~~~L~kmv~~l~~~p-s~RllKhviRcYlrLsdn-prar  252 (293)
T KOG3036|consen  176 IMESGSELSKTVATFILQKILLDDV-GLYYICQTAERFSAVALVLGKMVFQLVSMP-SPRLLKHVIRCYLRLSDN-PRAR  252 (293)
T ss_pred             HHhcccHHHHHHHHHHHHHHhhccc-cHHHHHHhHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCC-HHHH
Confidence            9999999889999999999887543 111111   0     11233 334454555 889999999999999874 5544


Q ss_pred             HHHHH---cCCHHHHHHHhccCCHHHHHHHHHHHHHHhC
Q 014945          362 QAIIE---AGIIGPLVNLLLNAEFEIKKEAAWAISNATS  397 (415)
Q Consensus       362 ~~l~~---~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~  397 (415)
                      ..+..   .++-..-...+-.+|+..+.--...+.|+..
T Consensus       253 ~aL~~clPd~Lrd~tfs~~l~~D~~~k~~l~~ll~~l~~  291 (293)
T KOG3036|consen  253 AALRSCLPDQLRDGTFSLLLKDDPETKQWLQQLLKNLCT  291 (293)
T ss_pred             HHHHhhCcchhccchHHHHHhcChhHHHHHHHHHHHhcc
Confidence            43322   2222222222223455555544445555543

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=95.71  E-value=0.51  Score=48.05  Aligned_cols=185  Identities=15%  Similarity=0.126  Sum_probs=126.5

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHH
Q 014945           75 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI  154 (415)
Q Consensus        75 ~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~  154 (415)
                      .+-..+.+.++..+..|+..+...++...  ........|.+-.++.....+.+..+...|+.+|..|+.........+.
T Consensus       257 ~l~t~~~s~~WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~  334 (815)
T KOG1820|consen  257 NLETEMLSKKWKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA  334 (815)
T ss_pred             HHHHhhhccchHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH
Confidence            34455668899999999999999876542  1111223445555555554443478899999999999986544432222


Q ss_pred             hCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCC--
Q 014945          155 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP--  232 (415)
Q Consensus       155 ~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~--  232 (415)
                       .+.+|.++..+......+++.+..++-.++...+.       ....+.+...+ .+.++.+...+...+........  
T Consensus       335 -~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~l-k~knp~~k~~~~~~l~r~~~~~~~~  405 (815)
T KOG1820|consen  335 -KNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEAL-KGKNPQIKGECLLLLDRKLRKLGPK  405 (815)
T ss_pred             -HhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHh-cCCChhhHHHHHHHHHHHHhhcCCc
Confidence             26788899988888888888887777666653221       11345666677 77888888776666555554432  


Q ss_pred             CCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc
Q 014945          233 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD  270 (415)
Q Consensus       233 ~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~  270 (415)
                      .........++|.++....+.+.+||..+..+++-+..
T Consensus       406 ~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k  443 (815)
T KOG1820|consen  406 TVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK  443 (815)
T ss_pred             CcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence            23344557889999999999999999999998887653

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=95.70  E-value=1.3  Score=38.87  Aligned_cols=219  Identities=15%  Similarity=0.168  Sum_probs=125.3

Q ss_pred             HHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhcCCCchhHHHH
Q 014945          118 RFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLV  195 (415)
Q Consensus       118 ~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~  195 (415)
                      .|-..|.+++ +.+|..|+.+|+.+...-+...   ....-+..|+.++.+  .|......++.++..+.....-.....
T Consensus         3 ~Lg~~Ltsed-~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~   78 (262)
T PF14500_consen    3 SLGEYLTSED-PIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESA   78 (262)
T ss_pred             chhhhhCCCC-HHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhH
Confidence            3556778887 8999999999998877544221   222235555555433  345455555777766663322111111


Q ss_pred             HhcCChHHHHHHhc-cchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccCCh
Q 014945          196 LSNGALMPLLAQFN-EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN-DDEVLTDACWALSYLSDGTN  273 (415)
Q Consensus       196 ~~~g~i~~L~~~l~-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~-d~~v~~~a~~~l~~l~~~~~  273 (415)
                      .  ..+..+.+... +......+..+...+..+..............++..+++.+..+ ||.-..-+...+..+...-+
T Consensus        79 ~--~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~  156 (262)
T PF14500_consen   79 V--KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD  156 (262)
T ss_pred             H--HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence            1  12333333221 12244567777777777776642222222345677777777654 88877777777776654332


Q ss_pred             HHHHHHHHcCcHHHHHHhcC--------C-C-Ch--hhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccc
Q 014945          274 DKIQAVIEAGVCPRLVELLR--------H-P-SP--SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS  341 (415)
Q Consensus       274 ~~~~~~~~~~~i~~L~~lL~--------~-~-~~--~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~  341 (415)
                      -       ....+.+.+.+.        . + ++  -.+..--..|.+....++...     .-.+|.|++-|.++ .+.
T Consensus       157 ~-------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~-~~~  223 (262)
T PF14500_consen  157 I-------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDST-SPS  223 (262)
T ss_pred             c-------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCC-CcH
Confidence            1       122333333332        1 1 21  233334445555555555333     35689999999999 999


Q ss_pred             hHHHHHHHHHHHhc
Q 014945          342 IKKEACWTISNITA  355 (415)
Q Consensus       342 v~~~a~~~l~nl~~  355 (415)
                      +|..+..+|..++.
T Consensus       224 ~K~D~L~tL~~c~~  237 (262)
T PF14500_consen  224 VKLDSLQTLKACIE  237 (262)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998886

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=95.48  E-value=1.7  Score=38.50  Aligned_cols=203  Identities=12%  Similarity=0.084  Sum_probs=138.8

Q ss_pred             HHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchh---hh---hchHHHHHHhhcCCChhHHHHHHHHHH
Q 014945          193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE---QT---RPALPALERLIHSNDDEVLTDACWALS  266 (415)
Q Consensus       193 ~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~---~~---~~~l~~l~~lL~~~d~~v~~~a~~~l~  266 (415)
                      ..+...|.+..++..+ ...+.+.+..++.+..++.+...+....   ..   ...++.++..-.. .+++.-.+-..+.
T Consensus        73 qef~~~~~l~~lI~~l-~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlr  150 (342)
T KOG1566|consen   73 QEFYNADVLSLLIQHL-PKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLR  150 (342)
T ss_pred             HHHHhCCchHHHHHhh-hcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHH
Confidence            4566788889999998 7778888999999999998776332222   11   3344444444111 2444333333333


Q ss_pred             HhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCC----hHHHHHHhcCCCccch
Q 014945          267 YLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQA----LPCLLDLLTQNYKKSI  342 (415)
Q Consensus       267 ~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~----l~~L~~ll~~~~~~~v  342 (415)
                      .... .+.....+..+.-+.....+...+.-++...|..+...+.+........++..+.    .++--.++.++ +.-+
T Consensus       151 Ecir-he~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~-Nyvt  228 (342)
T KOG1566|consen  151 ECIR-HEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSE-NYVT  228 (342)
T ss_pred             HHHh-hHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccc-ceeh
Confidence            3222 2333345666666777777777788789999999999988877766666665433    34466677888 9999


Q ss_pred             HHHHHHHHHHHhcC--CHHHHHHHH-HcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Q 014945          343 KKEACWTISNITAG--NVNQIQAII-EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG  399 (415)
Q Consensus       343 ~~~a~~~l~nl~~~--~~~~~~~l~-~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~  399 (415)
                      +..+...++.+..+  +.......+ +..-+..++.+|.++...+|.+|-....-+....
T Consensus       229 krqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp  288 (342)
T KOG1566|consen  229 KRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP  288 (342)
T ss_pred             HHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence            99999999988863  444444444 3456889999999999999999999888877654

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=95.44  E-value=0.15  Score=48.36  Aligned_cols=128  Identities=27%  Similarity=0.347  Sum_probs=92.5

Q ss_pred             HhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHh-hCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcC
Q 014945          121 EFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRL-LSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNG  199 (415)
Q Consensus       121 ~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l-l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g  199 (415)
                      +++.+.+ +-+|...+..++.--.++.       +.|++..++.. .++.++.+++.|+.+|+-+|.+++.         
T Consensus       523 ell~d~d-s~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~---------  585 (926)
T COG5116         523 ELLYDKD-SILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD---------  585 (926)
T ss_pred             HHhcCch-HHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------
Confidence            3444444 6666666555543222211       23677788887 6678899999999999999987764         


Q ss_pred             ChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC
Q 014945          200 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG  271 (415)
Q Consensus       200 ~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~  271 (415)
                      .+...+++|..+.+..++.-.+.+|.-.|.+..      ...++..|-.++.+.+.-|+..|+-+++-+...
T Consensus       586 ~lv~tvelLs~shN~hVR~g~AvaLGiacag~G------~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q  651 (926)
T COG5116         586 LLVGTVELLSESHNFHVRAGVAVALGIACAGTG------DKVATDILEALMYDTNDFVRQSAMIAVGMILMQ  651 (926)
T ss_pred             hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCc------cHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhh
Confidence            456778888778899999999999998887742      133456677778888889999999999887643

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=95.28  E-value=0.72  Score=37.88  Aligned_cols=141  Identities=17%  Similarity=0.140  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHhCC-Cch----hhHHHHhC------CChHHHHH-hhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhc
Q 014945          131 LQFEAAWALTNIASG-TSE----NTRVVIDH------GAVPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN  198 (415)
Q Consensus       131 i~~~a~~~L~~l~~~-~~~----~~~~~~~~------g~i~~L~~-ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~  198 (415)
                      +|..|+.+|..++.. ++.    +...++-.      +.-+.|+. ++.++++.+|..|+.++..+..++..+-...-+.
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~   81 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES   81 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence            566777777777664 111    11122211      23334444 6678899999999999999876653322221111


Q ss_pred             C-------------------ChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCC--CchhhhhchHHHHHHhhcCCChhH
Q 014945          199 G-------------------ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ--PLFEQTRPALPALERLIHSNDDEV  257 (415)
Q Consensus       199 g-------------------~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~--~~~~~~~~~l~~l~~lL~~~d~~v  257 (415)
                      +                   ....|+..|....+..+...++.++..+...-|-  .+......++..+..++.+.|.++
T Consensus        82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v  161 (182)
T PF13251_consen   82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV  161 (182)
T ss_pred             CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence            1                   2334556665566788888999999999877633  233445667777778888999999


Q ss_pred             HHHHHHHHHHhccC
Q 014945          258 LTDACWALSYLSDG  271 (415)
Q Consensus       258 ~~~a~~~l~~l~~~  271 (415)
                      +..++.+++-+...
T Consensus       162 ~v~~l~~~~~l~s~  175 (182)
T PF13251_consen  162 RVAALSCLGALLSV  175 (182)
T ss_pred             HHHHHHHHHHHHcC
Confidence            99999999887644

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=95.27  E-value=2.3  Score=39.93  Aligned_cols=190  Identities=13%  Similarity=0.058  Sum_probs=113.0

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCc--hhHHHhcCchHHHHHhhcCCC----Ch--HHHHHHHHHHHHHhCC
Q 014945           74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPP--INEVIQSGVVPRFIEFLSRDD----FP--QLQFEAAWALTNIASG  145 (415)
Q Consensus        74 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~--~~~~~~~g~i~~L~~ll~~~~----~~--~i~~~a~~~L~~l~~~  145 (415)
                      ..+..+++..+.+.++.|+....++....+...  .+.+.+.-+++.+-+++.+.+    .+  -.+..++.+|.-.+.+
T Consensus        14 ~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~   93 (698)
T KOG2611|consen   14 DDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV   93 (698)
T ss_pred             hhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence            445666677777788889988888876553222  234667777888888887643    12  3345566677777764


Q ss_pred             Cchhh--HHHHhCCChHHHHHhhCC-CC------HHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccch-hHh
Q 014945          146 TSENT--RVVIDHGAVPIFVRLLSS-PT------DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA-KLS  215 (415)
Q Consensus       146 ~~~~~--~~~~~~g~i~~L~~ll~~-~~------~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~-~~~  215 (415)
                       ++..  ..++  +.||.|..++.. .+      -.+.+.+..+|..+++..+. ...++..|+++.+.++-.-.. ..+
T Consensus        94 -pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G-~~~Lia~G~~~~~~Q~y~~~~~~~d  169 (698)
T KOG2611|consen   94 -PELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAG-LMTLIASGGLRVIAQMYELPDGSHD  169 (698)
T ss_pred             -hhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCch-hHHHHhcCchHHHHHHHhCCCCchh
Confidence             4322  2333  468999998865 12      33788999999999988664 566778899999997753211 111


Q ss_pred             HHHHHHHHHHHhhhC-C-CCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHh
Q 014945          216 MLRNATWTLSNFCRG-K-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL  268 (415)
Q Consensus       216 ~~~~a~~~l~~l~~~-~-~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l  268 (415)
                      . .-++.++.-+... . -.........++..+..-+...+.......|..+..+
T Consensus       170 ~-alal~Vlll~~~~~~cw~e~~~~flali~~va~df~~~~~a~KfElc~lL~~v  223 (698)
T KOG2611|consen  170 M-ALALKVLLLLVSKLDCWSETIERFLALIAAVARDFAVLHNALKFELCHLLSAV  223 (698)
T ss_pred             H-HHHHHHHHHHHHhcccCcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            1 1111111111111 1 1112222233344555445555666777788887744

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=95.16  E-value=0.28  Score=40.72  Aligned_cols=124  Identities=15%  Similarity=0.108  Sum_probs=84.0

Q ss_pred             cCCChhHHHHHHHHHHHhccCChHHHHHHHH----------------cCcHHHHHHhcCC------CChhhHHHHHHHHH
Q 014945          251 HSNDDEVLTDACWALSYLSDGTNDKIQAVIE----------------AGVCPRLVELLRH------PSPSVLIPALRTVG  308 (415)
Q Consensus       251 ~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~----------------~~~i~~L~~lL~~------~~~~v~~~a~~~l~  308 (415)
                      .+++......++..|+|++..+..... +++                ...+..|+..+..      ....-......++.
T Consensus         5 ~~~~~~~adl~~MLLsNlT~~~~~~~~-ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~   83 (192)
T PF04063_consen    5 TDPKSPLADLACMLLSNLTRSDSGCEK-LLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLA   83 (192)
T ss_pred             cCCCcchHHHHHHHHHHhccchHHHHH-HHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHH
Confidence            344555666778888888876554321 222                2356667777644      23445667888999


Q ss_pred             HhhcCChHHHHHHHHC--CC--hHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHH---cCCHHHHHHHhc
Q 014945          309 NIVTGDDMQTQCIINH--QA--LPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE---AGIIGPLVNLLL  378 (415)
Q Consensus       309 nl~~~~~~~~~~~~~~--~~--l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~---~~~i~~L~~~l~  378 (415)
                      |++... ..++.+++.  +.  +..|+.++.+. +..-|..++.+|.|+|-....+ ..++.   -+++|.|+--+.
T Consensus        84 NlS~~~-~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd~~~H-~~LL~~~~~~iLp~LLlPLa  157 (192)
T PF04063_consen   84 NLSQLP-EGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCFDTDSH-EWLLSDDEVDILPYLLLPLA  157 (192)
T ss_pred             HhcCCH-HHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhccHhHH-HHhcCchhhhhHHHHHhhcc
Confidence            999854 467777755  34  77888888888 8888889999999999865554 44443   367887776665

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.03  E-value=1.4  Score=41.39  Aligned_cols=143  Identities=18%  Similarity=0.158  Sum_probs=89.7

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCch-hHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCc-hhhhhchHH
Q 014945          167 SSPTDDVREQAVWALGNVAGDSPK-CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL-FEQTRPALP  244 (415)
Q Consensus       167 ~~~~~~v~~~a~~~L~nl~~~~~~-~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~l~  244 (415)
                      .+++..++..|+.+|+|.+...|. ++..  ..-.+..++.-|.++.+.+++-.++.+|.-+........ .....++.-
T Consensus       268 ~dp~a~~r~~a~r~L~~~as~~P~kv~th--~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ial  345 (533)
T KOG2032|consen  268 TDPSAKSRGMACRGLGNTASGAPDKVRTH--KTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIAL  345 (533)
T ss_pred             cCchhHHHHHHHHHHHHHhccCcHHHHHh--HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHH
Confidence            347889999999999999988553 2222  222566677777566788899999888888876542222 222234444


Q ss_pred             HHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHc---CcHHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 014945          245 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLRHPSPSVLIPALRTVGNIVT  312 (415)
Q Consensus       245 ~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~  312 (415)
                      .+-.++.+.+++.+.++..+++.|+.......+.+..+   +-..+++-.|.++++.+. .||+..-..+.
T Consensus       346 rlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va-~ACr~~~~~c~  415 (533)
T KOG2032|consen  346 RLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVA-RACRSELRTCY  415 (533)
T ss_pred             HHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHH-HHHHHHHHhcC
Confidence            56677888999999999998888864332221222221   223344445566666543 45555555543

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=94.74  E-value=0.16  Score=36.54  Aligned_cols=84  Identities=13%  Similarity=0.178  Sum_probs=64.6

Q ss_pred             HHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHH
Q 014945          285 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI  364 (415)
Q Consensus       285 i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l  364 (415)
                      ++..+..+.++.+.+|..++..|+.+.....  ....-..+++..+...++++ ++.|--.|...++.++...++.    
T Consensus         5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~-DsyVYL~aI~~L~~La~~~p~~----   77 (92)
T PF10363_consen    5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDE-DSYVYLNAIKGLAALADRHPDE----   77 (92)
T ss_pred             HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHHChHH----
Confidence            4567777888999999999999999998766  11122236788888999999 9999999999999999865552    


Q ss_pred             HHcCCHHHHHHHhcc
Q 014945          365 IEAGIIGPLVNLLLN  379 (415)
Q Consensus       365 ~~~~~i~~L~~~l~~  379 (415)
                          +++.|++...+
T Consensus        78 ----vl~~L~~~y~~   88 (92)
T PF10363_consen   78 ----VLPILLDEYAD   88 (92)
T ss_pred             ----HHHHHHHHHhC
Confidence                45566655543

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=94.70  E-value=1.2  Score=44.46  Aligned_cols=135  Identities=19%  Similarity=0.181  Sum_probs=82.3

Q ss_pred             chHHHHHHhhcCC----ChhHHHHHHHHHHHhcc----CChHHHHHHHHcCcHHHHHHhc----CCCChhhHHHHHHHHH
Q 014945          241 PALPALERLIHSN----DDEVLTDACWALSYLSD----GTNDKIQAVIEAGVCPRLVELL----RHPSPSVLIPALRTVG  308 (415)
Q Consensus       241 ~~l~~l~~lL~~~----d~~v~~~a~~~l~~l~~----~~~~~~~~~~~~~~i~~L~~lL----~~~~~~v~~~a~~~l~  308 (415)
                      ..+..+..+++++    .+.++..++-+++.+..    ..+..-. .+-..+++.+...|    ...+...+..++.+||
T Consensus       393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG  471 (574)
T smart00638      393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPD-FVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG  471 (574)
T ss_pred             HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCCh-hhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence            4455666666543    45677777777776653    2211101 11123455555554    3445566788999999


Q ss_pred             HhhcCChHHHHHHHHCCChHHHHHHhc-CC-CccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc--CCHHH
Q 014945          309 NIVTGDDMQTQCIINHQALPCLLDLLT-QN-YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN--AEFEI  384 (415)
Q Consensus       309 nl~~~~~~~~~~~~~~~~l~~L~~ll~-~~-~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~--~~~~v  384 (415)
                      |+....           .++.+..++. .. .+..+|..|+|+|..++...+..+        -+.++.++.+  .++++
T Consensus       472 N~g~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v--------~~~l~~i~~n~~e~~Ev  532 (574)
T smart00638      472 NAGHPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV--------QEVLLPIYLNRAEPPEV  532 (574)
T ss_pred             ccCChh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH--------HHHHHHHHcCCCCChHH
Confidence            997632           2345555554 21 245799999999999986555533        3455566654  66889


Q ss_pred             HHHHHHHHHHH
Q 014945          385 KKEAAWAISNA  395 (415)
Q Consensus       385 ~~~a~~aL~nl  395 (415)
                      |..|..+|...
T Consensus       533 RiaA~~~lm~t  543 (574)
T smart00638      533 RMAAVLVLMET  543 (574)
T ss_pred             HHHHHHHHHhc
Confidence            99888887665

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=94.68  E-value=0.3  Score=47.70  Aligned_cols=109  Identities=20%  Similarity=0.223  Sum_probs=81.2

Q ss_pred             hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChH
Q 014945          237 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM  316 (415)
Q Consensus       237 ~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~  316 (415)
                      ..+.+.+..++....++|..|+..+|..|..+...... +...+-.++...+..-+.+..+.||..|+.+|+.+-..+.+
T Consensus        81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~e-idd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d  159 (892)
T KOG2025|consen   81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAE-IDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD  159 (892)
T ss_pred             hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccc-cCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC
Confidence            36678888888888999999999999999999874332 22233345677788888899999999999999998743221


Q ss_pred             HHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHH
Q 014945          317 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS  351 (415)
Q Consensus       317 ~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~  351 (415)
                      .     +..+...+..++++.++++||..|...+.
T Consensus       160 e-----e~~v~n~l~~liqnDpS~EVRRaaLsnI~  189 (892)
T KOG2025|consen  160 E-----ECPVVNLLKDLIQNDPSDEVRRAALSNIS  189 (892)
T ss_pred             C-----cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence            1     12456678888877768999998766554

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=94.63  E-value=0.16  Score=36.55  Aligned_cols=78  Identities=10%  Similarity=0.069  Sum_probs=62.6

Q ss_pred             hHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCHHHHHH
Q 014945          327 LPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY  406 (415)
Q Consensus       327 l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~  406 (415)
                      +...+..+.++ .+.+|..+...|..+.....  ....-..+++..+...++++|+-|=..|+.+|+.++...+...+..
T Consensus         5 ~~~al~~L~dp-~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~   81 (92)
T PF10363_consen    5 LQEALSDLNDP-LPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPI   81 (92)
T ss_pred             HHHHHHHccCC-CcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHH
Confidence            45567778888 89999999999999998533  1122224578888899999999999999999999999877777777


Q ss_pred             H
Q 014945          407 K  407 (415)
Q Consensus       407 l  407 (415)
                      |
T Consensus        82 L   82 (92)
T PF10363_consen   82 L   82 (92)
T ss_pred             H
Confidence            7

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.63  E-value=1.5  Score=43.14  Aligned_cols=187  Identities=14%  Similarity=0.089  Sum_probs=118.2

Q ss_pred             HHHHHhhcCCCChHHHHHHHHHHHHHhCC-Cc----hhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchh
Q 014945          117 PRFIEFLSRDDFPQLQFEAAWALTNIASG-TS----ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC  191 (415)
Q Consensus       117 ~~L~~ll~~~~~~~i~~~a~~~L~~l~~~-~~----~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~  191 (415)
                      |.|-.-|+-.+ ..+|..|+..+.++--- +|    +..+.+++. -...+-.+|+++-+.++..|+..+..+...-...
T Consensus       177 p~l~R~L~a~N-s~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~  254 (1005)
T KOG1949|consen  177 PILWRGLKARN-SEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELYSLLEDPYPMVRSTAILGVCKITSKFWEM  254 (1005)
T ss_pred             HHHHHhhccCc-hhhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence            44455666677 89999999999887641 12    334445543 3677888999999999999988887765321110


Q ss_pred             --HHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 014945          192 --RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS  269 (415)
Q Consensus       192 --~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~  269 (415)
                        ...+.+  .+..++.-+..++..+++......|..+...+  ........++|.+-..|+++...|+.++...|..+-
T Consensus       255 iP~~i~~~--ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np--~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik  330 (1005)
T KOG1949|consen  255 IPPTILID--LLKKITDELAFDTSSDVRCSVFKGLPMILDNP--LSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK  330 (1005)
T ss_pred             cCHHHHHH--HHHHHHHHhhhccchheehhHhcCcHHHHcCc--cchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence              011111  33344444444556678888888888887653  233445677888888899999999999888887764


Q ss_pred             cCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 014945          270 DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT  312 (415)
Q Consensus       270 ~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~  312 (415)
                      ....   -.+.+---++.++..|..++..+....+..|-+.+.
T Consensus       331 ~vra---~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~l  370 (1005)
T KOG1949|consen  331 AVRA---AKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSFL  370 (1005)
T ss_pred             hhhh---hhhhccccHHHHHHHHhccccHHHHHHHHHHHHhhc
Confidence            3221   112222234566666766666666655555555543

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=94.54  E-value=4.8  Score=38.90  Aligned_cols=255  Identities=15%  Similarity=0.105  Sum_probs=132.1

Q ss_pred             HhhcCC-CHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCCh---HHHHHHHHHHHHHhCCCchhhHHH
Q 014945           78 AGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFP---QLQFEAAWALTNIASGTSENTRVV  153 (415)
Q Consensus        78 ~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~---~i~~~a~~~L~~l~~~~~~~~~~~  153 (415)
                      .++..+ ..+.+..+...+..+...... .. ....    ..+.+.+.....+   ..+..|+..|   +.+..+.  ..
T Consensus        35 DLi~~~~p~e~R~~~~~ll~~~i~~~~~-~~-~~~R----~~fF~~I~~~~~~~d~~~~l~aL~~L---T~~Grdi--~~  103 (464)
T PF11864_consen   35 DLIDPNQPSEARRAALELLIACIKRQDS-SS-GLMR----AEFFRDISDPSNDDDFDLRLEALIAL---TDNGRDI--DF  103 (464)
T ss_pred             hhcCCCCCHHHHHHHHHHHHHHHHcccc-cc-HHHH----HHHHHHHhcCCCchhHHHHHHHHHHH---HcCCcCc--hh
Confidence            344443 456788888888887765422 11 1111    1222333332213   4455555544   4443433  22


Q ss_pred             HhCCChHHHHHhhCCC---------------------------CHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHH
Q 014945          154 IDHGAVPIFVRLLSSP---------------------------TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLA  206 (415)
Q Consensus       154 ~~~g~i~~L~~ll~~~---------------------------~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~  206 (415)
                      .+.++.+.|...+..-                           +.......+..+.|+...+...-+.-.-.+.+..++.
T Consensus       104 ~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~  183 (464)
T PF11864_consen  104 FEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICT  183 (464)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence            5567777777766310                           2223344455555555433222121112234555555


Q ss_pred             HhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHH
Q 014945          207 QFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCP  286 (415)
Q Consensus       207 ~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~  286 (415)
                      +..+..+......++.++-.+..+. ..+......++..|......  .+....+-.++.||+......       ..+.
T Consensus       184 iC~~Ts~~~di~~~L~vldaii~y~-~iP~~sl~~~i~vLCsi~~~--~~l~~~~w~~m~nL~~S~~g~-------~~i~  253 (464)
T PF11864_consen  184 ICKSTSSEDDIEACLSVLDAIITYG-DIPSESLSPCIEVLCSIVNS--VSLCKPSWRTMRNLLKSHLGH-------SAIR  253 (464)
T ss_pred             HHhccCcHHHHHHHHHHHHHHHHcC-cCChHHHHHHHHHHhhHhcc--cccchhHHHHHHHHHcCccHH-------HHHH
Confidence            5444445555566666666665542 22222233344444333222  255566666777877544322       1356


Q ss_pred             HHHHhcCC------CChhhHHHHHHHHHHhhcCChHHHHHHHHC---CChHHHHHHhcCCCccchHHHHHHHHHHHh
Q 014945          287 RLVELLRH------PSPSVLIPALRTVGNIVTGDDMQTQCIINH---QALPCLLDLLTQNYKKSIKKEACWTISNIT  354 (415)
Q Consensus       287 ~L~~lL~~------~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~---~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~  354 (415)
                      .|..+|.+      .+..+..-|+..++.+..+.......-+..   -+++.+...++.+ ++.+-.+....+.++.
T Consensus       254 ~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~-~~~v~~eIl~~i~~ll  329 (464)
T PF11864_consen  254 TLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN-SPRVDYEILLLINRLL  329 (464)
T ss_pred             HHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC-CCeehHHHHHHHHHHH
Confidence            67777732      244567789999998887763222212222   2677788888877 7777777777777777

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.50  E-value=0.57  Score=41.24  Aligned_cols=147  Identities=17%  Similarity=0.170  Sum_probs=104.9

Q ss_pred             hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHH
Q 014945          240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ  319 (415)
Q Consensus       240 ~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~  319 (415)
                      ...+...+..|.++|.+...+++..+..|+....+.....+. .++-.++.-+++....|...||.+++.+.+.-.....
T Consensus        87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~  165 (334)
T KOG2933|consen   87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID  165 (334)
T ss_pred             HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566677788889999999999999998776655444443 3567777778888888999999999999876554444


Q ss_pred             HHHHCCChHHHHHHhcC-C--CccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHh
Q 014945          320 CIINHQALPCLLDLLTQ-N--YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT  396 (415)
Q Consensus       320 ~~~~~~~l~~L~~ll~~-~--~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~  396 (415)
                      .     -++.++..|.+ .  .+.-|+..|-.+|..+..+-..+.       +++.|+..+.+..+.++..++.+..++.
T Consensus       166 ~-----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~-------~L~~L~~~~~~~n~r~r~~a~~~~~~~v  233 (334)
T KOG2933|consen  166 Q-----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK-------LLRKLIPILQHSNPRVRAKAALCFSRCV  233 (334)
T ss_pred             H-----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH-------HHHHHHHHHhhhchhhhhhhhccccccc
Confidence            3     23344443322 2  134588888899988886422222       5778888888899999999998888887


Q ss_pred             CCC
Q 014945          397 SGG  399 (415)
Q Consensus       397 ~~~  399 (415)
                      ...
T Consensus       234 ~rl  236 (334)
T KOG2933|consen  234 IRL  236 (334)
T ss_pred             eec
Confidence            544

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=94.39  E-value=0.24  Score=48.21  Aligned_cols=143  Identities=17%  Similarity=0.212  Sum_probs=104.8

Q ss_pred             hHHHHHHhhcC----CChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcC-CCChhhHHHHHHHHHHhhcCChH
Q 014945          242 ALPALERLIHS----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDM  316 (415)
Q Consensus       242 ~l~~l~~lL~~----~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~l~nl~~~~~~  316 (415)
                      +-|.+.+...+    +|+.++..|.-++..+..-+.+.    . ..-+|.++..+. +++|.+|..|.-.+|.++.+...
T Consensus       893 F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~f----c-~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~  967 (1128)
T COG5098         893 FKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEF----C-SEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT  967 (1128)
T ss_pred             hhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHH----H-HHHHHHHHHHHhhCCCcceeccceeeccccceehhh
Confidence            44555555544    68899999888888765433222    1 123688888886 88999999999999998876543


Q ss_pred             HHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHh
Q 014945          317 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT  396 (415)
Q Consensus       317 ~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~  396 (415)
                      .++.     .-.+|..-|.+. +..||+.+..++.++.-..     .+--.|-++.+..+|.++|.++...|-..+..++
T Consensus       968 ~~de-----~t~yLyrrL~De-~~~V~rtclmti~fLilag-----q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a 1036 (1128)
T COG5098         968 TADE-----HTHYLYRRLGDE-DADVRRTCLMTIHFLILAG-----QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIA 1036 (1128)
T ss_pred             hhHH-----HHHHHHHHhcch-hhHHHHHHHHHHHHHHHcc-----ceeeccchhhhHhhccCCcchHHHHHHHHHHHHH
Confidence            3332     235788888888 9999999999999887521     2223577889999999999999999988888888


Q ss_pred             CCCC
Q 014945          397 SGGS  400 (415)
Q Consensus       397 ~~~~  400 (415)
                      ...+
T Consensus      1037 ~KdN 1040 (1128)
T COG5098        1037 KKDN 1040 (1128)
T ss_pred             hccc
Confidence            6543

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=94.36  E-value=0.22  Score=41.31  Aligned_cols=125  Identities=18%  Similarity=0.144  Sum_probs=80.4

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCchhHHHHH---------------hcCChHHHHHHhcc-----chhHhHHHHHHHHHHH
Q 014945          167 SSPTDDVREQAVWALGNVAGDSPKCRDLVL---------------SNGALMPLLAQFNE-----HAKLSMLRNATWTLSN  226 (415)
Q Consensus       167 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~---------------~~g~i~~L~~~l~~-----~~~~~~~~~a~~~l~~  226 (415)
                      .+++......++..|+|++.....++..+-               +...+..|+..+.+     .....-..+.+.+++|
T Consensus         5 ~~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N   84 (192)
T PF04063_consen    5 TDPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN   84 (192)
T ss_pred             cCCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence            345556778888899999877665542321               12246677777744     2345567889999999


Q ss_pred             hhhCCCCCchhhh--hc--hHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHc---CcHHHHHHhc
Q 014945          227 FCRGKPQPLFEQT--RP--ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELL  292 (415)
Q Consensus       227 l~~~~~~~~~~~~--~~--~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~i~~L~~lL  292 (415)
                      +++......+...  ..  .+..|+.++++.+..-+.-++.+|.|+|-..+.. ..++..   ++++.|+--|
T Consensus        85 lS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H-~~LL~~~~~~iLp~LLlPL  156 (192)
T PF04063_consen   85 LSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSH-EWLLSDDEVDILPYLLLPL  156 (192)
T ss_pred             hcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHH-HHhcCchhhhhHHHHHhhc
Confidence            9987644444332  22  3777888888887777888899999999766544 334332   3444444444

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=94.27  E-value=1.7  Score=36.06  Aligned_cols=147  Identities=18%  Similarity=0.164  Sum_probs=94.9

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (415)
Q Consensus        72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  151 (415)
                      -++.+++...+++..++..|+..+..++...-..|..      .+|.|+.+..+++ +.++..|...+..+....+....
T Consensus         9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~------cvp~lIAL~ts~~-~~ir~~A~~~l~~l~eK~~s~v~   81 (187)
T PF12830_consen    9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQ------CVPTLIALETSPN-PSIRSRAYQLLKELHEKHESLVE   81 (187)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHH------HHhHhhhhhCCCC-hHHHHHHHHHHHHHHHHhHHHHH
Confidence            4688888888999999999999999887654223332      5899999999988 99999999999999886555444


Q ss_pred             HHHhCCChHHHHHhhC---CC-CHHH---HHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccch-------hHhHH
Q 014945          152 VVIDHGAVPIFVRLLS---SP-TDDV---REQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA-------KLSML  217 (415)
Q Consensus       152 ~~~~~g~i~~L~~ll~---~~-~~~v---~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~-------~~~~~  217 (415)
                      .-...| +..-..+-.   .+ ....   ....+..+..+...+...|..+     +..+++.+....       ...-.
T Consensus        82 ~~~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l  155 (187)
T PF12830_consen   82 SRYSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDL  155 (187)
T ss_pred             HHHHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhHH
Confidence            333333 332222221   11 1111   4556666667776655566654     445666653221       33445


Q ss_pred             HHHHHHHHHhhhCC
Q 014945          218 RNATWTLSNFCRGK  231 (415)
Q Consensus       218 ~~a~~~l~~l~~~~  231 (415)
                      ..++++..||+.-+
T Consensus       156 ~~~~Fla~nLA~l~  169 (187)
T PF12830_consen  156 DFLLFLAENLATLP  169 (187)
T ss_pred             HHHHHHHHHHhcCC
Confidence            56666666666553

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=94.19  E-value=0.44  Score=45.63  Aligned_cols=109  Identities=20%  Similarity=0.192  Sum_probs=80.7

Q ss_pred             hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh
Q 014945          236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD  315 (415)
Q Consensus       236 ~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~  315 (415)
                      ...+.+.+..++..+.+.|..|+..++.++..+++.-.+ ++..+-.|.+..|.+-+-+.++.|+..|+.+|..+-....
T Consensus        86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~  164 (885)
T COG5218          86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL  164 (885)
T ss_pred             hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence            456688888888999999999999999999988865443 3445556788888888889999999999999988864332


Q ss_pred             HHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHH
Q 014945          316 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI  350 (415)
Q Consensus       316 ~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l  350 (415)
                      ....     .....+..+++..++.+||..|..-+
T Consensus       165 neen-----~~~n~l~~~vqnDPS~EVRr~allni  194 (885)
T COG5218         165 NEEN-----RIVNLLKDIVQNDPSDEVRRLALLNI  194 (885)
T ss_pred             ChHH-----HHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence            2111     22345667776665788888765443

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=94.11  E-value=5.9  Score=44.50  Aligned_cols=275  Identities=12%  Similarity=0.073  Sum_probs=147.9

Q ss_pred             CCCHHHHHHHHHHHHHHhccC--CCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCCh
Q 014945           82 SDDRNIQLDATTQFRKLLSIE--RSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAV  159 (415)
Q Consensus        82 ~~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i  159 (415)
                      +.+..+...|+..|+++...-  ..+....-.+..++..|..++.+....+++...+.|+.++.....+    -++. +.
T Consensus      1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~----nIkS-GW 1222 (1780)
T PLN03076       1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN----NVKS-GW 1222 (1780)
T ss_pred             CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh----hhhc-Cc
Confidence            346778888998888875422  1111112234457888888787655589999999999998763222    2233 46


Q ss_pred             HHHHHhhC----CCCHHHHHHHHHHHHHhcCCCchh-----HHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHh---
Q 014945          160 PIFVRLLS----SPTDDVREQAVWALGNVAGDSPKC-----RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF---  227 (415)
Q Consensus       160 ~~L~~ll~----~~~~~v~~~a~~~L~nl~~~~~~~-----~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l---  227 (415)
                      +.++.++.    +.++.+.+.|..++..|..+.-..     .+.+..  .+..+..+..+..+..+--.++..|+++   
T Consensus      1223 ktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~D--lV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~ 1300 (1780)
T PLN03076       1223 KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTD--CVNCLIAFTNSRFNKDISLNAIAFLRFCATK 1300 (1780)
T ss_pred             HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHH--HHHHHHHHHhCcCcccccHHHHHHHHHHHHH
Confidence            66666665    467888889999888876442110     011111  3444444443332333333444334333   


Q ss_pred             -hhCCC-----------------------CC------ch---hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC---
Q 014945          228 -CRGKP-----------------------QP------LF---EQTRPALPALERLIHSNDDEVLTDACWALSYLSDG---  271 (415)
Q Consensus       228 -~~~~~-----------------------~~------~~---~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~---  271 (415)
                       +.+..                       ..      ..   ..--+++..|..+..+++.+||..|+..|..+...   
T Consensus      1301 La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~ 1380 (1780)
T PLN03076       1301 LAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGH 1380 (1780)
T ss_pred             HHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhc
Confidence             11100                       00      00   01123344455556678899999999988877532   


Q ss_pred             --ChHHHHHHHHcCcHHHHHHhcCCC------------------C-----hhhHHHHHHHHHHhh---cCChHHHHHHHH
Q 014945          272 --TNDKIQAVIEAGVCPRLVELLRHP------------------S-----PSVLIPALRTVGNIV---TGDDMQTQCIIN  323 (415)
Q Consensus       272 --~~~~~~~~~~~~~i~~L~~lL~~~------------------~-----~~v~~~a~~~l~nl~---~~~~~~~~~~~~  323 (415)
                        +++....++. +++-+++..+++.                  +     ..+...+..+|.+++   ...=+....+++
T Consensus      1381 ~Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~ 1459 (1780)
T PLN03076       1381 LFSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLK 1459 (1780)
T ss_pred             cCCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              2233333333 3445554444210                  0     012233333444443   321122222222


Q ss_pred             CCChHHHHHHhcCCCccchHHHHHHHHHHHhcC-----CHHHHHHHHH
Q 014945          324 HQALPCLLDLLTQNYKKSIKKEACWTISNITAG-----NVNQIQAIIE  366 (415)
Q Consensus       324 ~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~-----~~~~~~~l~~  366 (415)
                       +++..|..++..+ +..+.+.++.+|.++...     +++....+++
T Consensus      1460 -~~l~ll~~ci~q~-n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~ 1505 (1780)
T PLN03076       1460 -KVLMLLVSFIKRP-HQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVL 1505 (1780)
T ss_pred             -HHHHHHHHHHcCc-hHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence             5666666677777 888888888888888752     4555555443

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=94.06  E-value=0.31  Score=40.50  Aligned_cols=109  Identities=10%  Similarity=0.155  Sum_probs=73.7

Q ss_pred             hHHHHHhhcCCCChHHHHHHHHHHHH-HhCCCchhhHHHHhCCChHHHHHhhCC---------CCHHHHHHHHHHHHHhc
Q 014945          116 VPRFIEFLSRDDFPQLQFEAAWALTN-IASGTSENTRVVIDHGAVPIFVRLLSS---------PTDDVREQAVWALGNVA  185 (415)
Q Consensus       116 i~~L~~ll~~~~~~~i~~~a~~~L~~-l~~~~~~~~~~~~~~g~i~~L~~ll~~---------~~~~v~~~a~~~L~nl~  185 (415)
                      ...+++.+.+.. ...  ..+.-|.. +-..+......+++.|++..|+.+|..         .+..+...++.|+..|.
T Consensus        68 p~~~i~~L~~~~-~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~  144 (187)
T PF06371_consen   68 PEWYIKKLKSRP-STS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM  144 (187)
T ss_dssp             HHHHHHHHTTT---HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHccC-ccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence            456677776654 221  22222222 223334677888888999999998853         45578889999999998


Q ss_pred             CCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhh
Q 014945          186 GDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  228 (415)
Q Consensus       186 ~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~  228 (415)
                      ....+....+-..+.+..++..| .+++..++..++..|+.+|
T Consensus       145 n~~~G~~~v~~~~~~v~~i~~~L-~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  145 NTKYGLEAVLSHPDSVNLIALSL-DSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             SSHHHHHHHHCSSSHHHHHHHT---TTSHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHcCcHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence            77766555555577888888888 7888999999999998887

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=94.04  E-value=0.75  Score=44.11  Aligned_cols=117  Identities=16%  Similarity=0.170  Sum_probs=81.9

Q ss_pred             HhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHH
Q 014945          267 YLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEA  346 (415)
Q Consensus       267 ~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a  346 (415)
                      +.-..+++..+ ++ .|++..++..+.+++..|+..++.+|+-+...-. .++..+-.|++..|.+-+-+. .+.||.+|
T Consensus        77 Y~~~~dpeg~~-~V-~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~-eIDe~l~N~L~ekl~~R~~DR-E~~VR~eA  152 (885)
T COG5218          77 YDMPDDPEGEE-LV-AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVR-EIDEVLANGLLEKLSERLFDR-EKAVRREA  152 (885)
T ss_pred             hcCCCChhhhH-HH-HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHhcc-hHHHHHHH
Confidence            44444444333 22 3677888888889999999999999988876443 234445558888888888788 89999999


Q ss_pred             HHHHHHHhc--CCHHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHHHHHHHHHhC
Q 014945          347 CWTISNITA--GNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNATS  397 (415)
Q Consensus       347 ~~~l~nl~~--~~~~~~~~l~~~~~i~~L~~~l~~-~~~~v~~~a~~aL~nl~~  397 (415)
                      ..+|+.+-.  +++++.       +...|..++++ ++.+||..|+   .|+..
T Consensus       153 v~~L~~~Qe~~~neen~-------~~n~l~~~vqnDPS~EVRr~al---lni~v  196 (885)
T COG5218         153 VKVLCYYQEMELNEENR-------IVNLLKDIVQNDPSDEVRRLAL---LNISV  196 (885)
T ss_pred             HHHHHHHHhccCChHHH-------HHHHHHHHHhcCcHHHHHHHHH---HHeee
Confidence            999999875  566543       34466666664 5678887654   45543

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=93.99  E-value=0.51  Score=38.29  Aligned_cols=112  Identities=21%  Similarity=0.212  Sum_probs=80.8

Q ss_pred             CcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHC--CChHHHHHHhcCCCccchHHHHHHHHHHHhc---CC
Q 014945          283 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH--QALPCLLDLLTQNYKKSIKKEACWTISNITA---GN  357 (415)
Q Consensus       283 ~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~--~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~---~~  357 (415)
                      ..+.++..+|++.++.-+-.++..++.++..++.  +.+.++  ..+..++.+++.+..+.+++.++.++..+..   +.
T Consensus        25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~  102 (165)
T PF08167_consen   25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK  102 (165)
T ss_pred             HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            3567899999999998899999999888876532  223233  4678888999887567889999999998885   55


Q ss_pred             HHHHHHHHHc---CCHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945          358 VNQIQAIIEA---GIIGPLVNLLLNAEFEIKKEAAWAISNATSG  398 (415)
Q Consensus       358 ~~~~~~l~~~---~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~  398 (415)
                      ++-.+++...   ++++.++.+++.  ..+...++.+|..+...
T Consensus       103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~  144 (165)
T PF08167_consen  103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH  144 (165)
T ss_pred             CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence            6655555433   345556665553  56778888888888754

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=93.97  E-value=0.37  Score=48.54  Aligned_cols=152  Identities=18%  Similarity=0.206  Sum_probs=85.8

Q ss_pred             HHHHHHHhhhCCCCCchhhhhchHHHHHHhhcC----CChhHHHHHHHHHHHhcc----CC------hHHHHHHHHcCcH
Q 014945          220 ATWTLSNFCRGKPQPLFEQTRPALPALERLIHS----NDDEVLTDACWALSYLSD----GT------NDKIQAVIEAGVC  285 (415)
Q Consensus       220 a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~----~d~~v~~~a~~~l~~l~~----~~------~~~~~~~~~~~~i  285 (415)
                      +.+.+..+......+.    ...+..+..++++    .++.+...|+-+++.+..    ..      ... ...+...++
T Consensus       414 a~~~l~~l~~~~~~Pt----~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~-~~~~~~~~~  488 (618)
T PF01347_consen  414 AAQLLASLPFHVRRPT----EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPC-SRCIIEKYV  488 (618)
T ss_dssp             HHHHHHHHHHT---------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT------------SS--GGGT
T ss_pred             HHHHHHHHHhhcCCCC----HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeeccccccccccc-chhhHHHHH
Confidence            4444555444432222    2334445555543    356677777777777652    21      001 111223456


Q ss_pred             HHHHHhcC----CCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCC--CccchHHHHHHHHHHHhcCCHH
Q 014945          286 PRLVELLR----HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN--YKKSIKKEACWTISNITAGNVN  359 (415)
Q Consensus       286 ~~L~~lL~----~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~~v~~~a~~~l~nl~~~~~~  359 (415)
                      +.+...|.    ..+..-+..++++|||+...           ..++.+..++...  ....+|..|+|++..++...++
T Consensus       489 ~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~-----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~  557 (618)
T PF01347_consen  489 PYLEQELKEAVSRGDEEEKIVYLKALGNLGHP-----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPE  557 (618)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G-----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HH
T ss_pred             HHHHHHHHHHhhccCHHHHHHHHHHhhccCCc-----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcH
Confidence            66666654    45667888999999999642           2456677766544  2568999999999999877665


Q ss_pred             HHHHHHHcCCHHHHHHHhcc--CCHHHHHHHHHHHHHH
Q 014945          360 QIQAIIEAGIIGPLVNLLLN--AEFEIKKEAAWAISNA  395 (415)
Q Consensus       360 ~~~~l~~~~~i~~L~~~l~~--~~~~v~~~a~~aL~nl  395 (415)
                      .+        .+.|+.++.+  .++++|..|..+|...
T Consensus       558 ~v--------~~~l~~I~~n~~e~~EvRiaA~~~lm~~  587 (618)
T PF01347_consen  558 KV--------REILLPIFMNTTEDPEVRIAAYLILMRC  587 (618)
T ss_dssp             HH--------HHHHHHHHH-TTS-HHHHHHHHHHHHHT
T ss_pred             HH--------HHHHHHHhcCCCCChhHHHHHHHHHHhc
Confidence            43        4456666655  5688999888777664

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=93.96  E-value=3.4  Score=40.87  Aligned_cols=112  Identities=12%  Similarity=0.112  Sum_probs=79.9

Q ss_pred             HHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHH
Q 014945          280 IEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN  359 (415)
Q Consensus       280 ~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~  359 (415)
                      +...+++.|..-+++.+..++..++..+..++..-|.   ..+..-++|.+..+.....+..++..++-+++-+..    
T Consensus       386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~---~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q----  458 (700)
T KOG2137|consen  386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV---PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ----  458 (700)
T ss_pred             HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH---HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH----
Confidence            3456788888888999999999999999999876552   244556788888876554488899999999998873    


Q ss_pred             HHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945          360 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG  398 (415)
Q Consensus       360 ~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~  398 (415)
                      ..+..--...+..+.+.....++.+......+..++...
T Consensus       459 ~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~  497 (700)
T KOG2137|consen  459 RLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALI  497 (700)
T ss_pred             HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhh
Confidence            122221112355666666778888887777777776644

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=93.96  E-value=7.4  Score=38.84  Aligned_cols=251  Identities=15%  Similarity=0.082  Sum_probs=129.7

Q ss_pred             HHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCC--------CCHHHHHHHHHHHHHhcC----CCchhHHHHHhcCCh
Q 014945          134 EAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--------PTDDVREQAVWALGNVAG----DSPKCRDLVLSNGAL  201 (415)
Q Consensus       134 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--------~~~~v~~~a~~~L~nl~~----~~~~~~~~~~~~g~i  201 (415)
                      .|+.++..+.+..++.+  +  .|+++.+...|..        .+..-.+.|++.++++..    .+| . .-+.+.=++
T Consensus       389 aal~fl~~~~sKrke~T--f--qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp-~-an~me~fiv  462 (970)
T COG5656         389 AALFFLIISKSKRKEET--F--QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSP-A-ANVMEYFIV  462 (970)
T ss_pred             HHHHHHHHHhcccchhh--h--hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCch-H-HHHHHHHHH
Confidence            45555555555333322  2  3888999988832        234456778888887754    232 2 222333244


Q ss_pred             HHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHH
Q 014945          202 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE  281 (415)
Q Consensus       202 ~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~  281 (415)
                      +.++..+ +++.--++..+|..++.+..+  -.+......+......++++++-.|+..|+-++..+..+..  ....+.
T Consensus       463 ~hv~P~f-~s~ygfL~Srace~is~~eeD--fkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q--~h~k~s  537 (970)
T COG5656         463 NHVIPAF-RSNYGFLKSRACEFISTIEED--FKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQ--SHEKFS  537 (970)
T ss_pred             HHhhHhh-cCcccchHHHHHHHHHHHHHh--cccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchh--hhHHHH
Confidence            4555555 666777889999999999544  33334445667777788888888899999999988875543  223333


Q ss_pred             c---CcHHHHHHhcCCCChhhHHHHHHHH-HHhhcCChHHHHHHHH---CCChHHHHHHhcCCCc-----cchHHHHHHH
Q 014945          282 A---GVCPRLVELLRHPSPSVLIPALRTV-GNIVTGDDMQTQCIIN---HQALPCLLDLLTQNYK-----KSIKKEACWT  349 (415)
Q Consensus       282 ~---~~i~~L~~lL~~~~~~v~~~a~~~l-~nl~~~~~~~~~~~~~---~~~l~~L~~ll~~~~~-----~~v~~~a~~~  349 (415)
                      .   +.++.|+.+-+.-+-++...++..+ +..+..-......+..   ..++.....++.++.+     ++-+..|...
T Consensus       538 ahVp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGi  617 (970)
T COG5656         538 AHVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGI  617 (970)
T ss_pred             hhhhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHH
Confidence            3   3344444444333333333333322 2222111111111111   1233344444433311     1223334444


Q ss_pred             HHHHhc------CCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHh
Q 014945          350 ISNITA------GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT  396 (415)
Q Consensus       350 l~nl~~------~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~  396 (415)
                      |..+.+      ..+...+.+.. ...|.+--++++.-.++-.+|+..+-+++
T Consensus       618 L~T~~smiLSlen~p~vLk~le~-slypvi~Filkn~i~dfy~Ea~dildg~t  669 (970)
T COG5656         618 LRTIESMILSLENRPLVLKYLEV-SLYPVISFILKNEISDFYQEALDILDGYT  669 (970)
T ss_pred             HHHHHHHHHhcccchHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHhhhh
Confidence            443332      24443333332 25555555556555666666666555544

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.91  E-value=0.94  Score=39.95  Aligned_cols=140  Identities=16%  Similarity=0.162  Sum_probs=99.3

Q ss_pred             HHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHH
Q 014945          202 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE  281 (415)
Q Consensus       202 ~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~  281 (415)
                      ...+..| .+.+.......+..+..|+...+..-......++..+++-+++....|-..||.+++.+.....+.+..   
T Consensus        91 ~~~l~~L-~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~---  166 (334)
T KOG2933|consen   91 KQALKKL-SSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ---  166 (334)
T ss_pred             HHHHHHh-chHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            3344555 566666777777777777777665555566778888889999999999999999999988665544433   


Q ss_pred             cCcHHHHHHhc-C---CCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc
Q 014945          282 AGVCPRLVELL-R---HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA  355 (415)
Q Consensus       282 ~~~i~~L~~lL-~---~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~  355 (415)
                        -++.++..| .   .++.-+++.|-.+|-.++..-..+       .+++.|...+.+. .+.++..++.++.++..
T Consensus       167 --~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~-n~r~r~~a~~~~~~~v~  234 (334)
T KOG2933|consen  167 --ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHS-NPRVRAKAALCFSRCVI  234 (334)
T ss_pred             --HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhh-chhhhhhhhccccccce
Confidence              233344433 2   234457888888888887654332       3467888889888 99999999988887764

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=93.83  E-value=4  Score=35.31  Aligned_cols=204  Identities=19%  Similarity=0.171  Sum_probs=120.5

Q ss_pred             hHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHH
Q 014945          116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLV  195 (415)
Q Consensus       116 i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~  195 (415)
                      ++.|+.-+....++..+...+..|..++........     -++..+..+...+.......+...+..+...++..-   
T Consensus         2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---   73 (234)
T PF12530_consen    2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---   73 (234)
T ss_pred             hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence            455555344433489999999999999986422222     235566667777777776677777777765554221   


Q ss_pred             HhcCChHHHHHHh---------ccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhh-cCCChhHHHHHHHHH
Q 014945          196 LSNGALMPLLAQF---------NEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI-HSNDDEVLTDACWAL  265 (415)
Q Consensus       196 ~~~g~i~~L~~~l---------~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL-~~~d~~v~~~a~~~l  265 (415)
                         +.+..++..+         ..+...+.......++..+|...|.    ....+++.+..+| +++++.++..++.++
T Consensus        74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l  146 (234)
T PF12530_consen   74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEAL  146 (234)
T ss_pred             ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence               2344444441         1122344555666788888887665    4456788888888 788888999999999


Q ss_pred             HHhccCChHHHHHHHHcCcHHHHHHhcCCC-ChhhHHHHHHHHHHhhcCCh-HHHHHHHHCCChHHHHHHhcCCCcc
Q 014945          266 SYLSDGTNDKIQAVIEAGVCPRLVELLRHP-SPSVLIPALRTVGNIVTGDD-MQTQCIINHQALPCLLDLLTQNYKK  340 (415)
Q Consensus       266 ~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~  340 (415)
                      ..++...--  + +.  .....+..-|+.+ .+.+....+..++.+..+.- ..........++..+.++..+. +.
T Consensus       147 ~~Lc~~~vv--d-~~--s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~-~~  217 (234)
T PF12530_consen  147 APLCEAEVV--D-FY--SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSS-DV  217 (234)
T ss_pred             HHHHHHhhc--c-HH--HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccc-cc
Confidence            999943221  1 11  1233444444433 34555544444444443322 1112234446677777777766 43

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=93.82  E-value=5.8  Score=37.08  Aligned_cols=223  Identities=11%  Similarity=0.060  Sum_probs=119.0

Q ss_pred             CHHHHHHHHHHHHHhcCCCchhHHHHHhc---CChHHHHHHhc-cchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHH
Q 014945          170 TDDVREQAVWALGNVAGDSPKCRDLVLSN---GALMPLLAQFN-EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPA  245 (415)
Q Consensus       170 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~~---g~i~~L~~~l~-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~  245 (415)
                      +..+..+|+.+++.+..+..-. ..+-..   -++...+..+. .+.+..+...++|+++.=-.............++..
T Consensus        59 ~~~L~~qALkll~~~l~~~~i~-~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~  137 (372)
T PF12231_consen   59 DSRLVIQALKLLGFFLYHPEIV-STLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAA  137 (372)
T ss_pred             chHHHHHHHHHHHHHHccHHHH-hhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHH
Confidence            6789999999999987554321 111111   02444455553 334667888888887753222111111111222222


Q ss_pred             HHHhhc-CCChhHHHHHHHHHHHhccCChHHHHHHHHcC-cHHHHHHhcCCCChhhHHHHHHHHHHhhc--CChHH-H--
Q 014945          246 LERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAG-VCPRLVELLRHPSPSVLIPALRTVGNIVT--GDDMQ-T--  318 (415)
Q Consensus       246 l~~lL~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~-~i~~L~~lL~~~~~~v~~~a~~~l~nl~~--~~~~~-~--  318 (415)
                      +..+-+ -+...+....+.++.++....+....  ...+ .++.++..+-+....++..|...+-.+..  +.... .  
T Consensus       138 l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~--~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~  215 (372)
T PF12231_consen  138 LHNIKNRFPSKSIISERLNIYKRLLSQFPQQMI--KHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKS  215 (372)
T ss_pred             HHHhhccCCchhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHH
Confidence            222222 34567888899999999876654321  1222 57777777777777777765554444432  22111 1  


Q ss_pred             -HHHHH----CC-----ChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHH-HHHHHHHcCCHHHHHHHhccCCHHHHHH
Q 014945          319 -QCIIN----HQ-----ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN-QIQAIIEAGIIGPLVNLLLNAEFEIKKE  387 (415)
Q Consensus       319 -~~~~~----~~-----~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~-~~~~l~~~~~i~~L~~~l~~~~~~v~~~  387 (415)
                       ...++    .+     +.+.|..++.+. +.....--.|...-..-+++. .....++ ..+...-..+.++|+.+|..
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~L~~mi~~~-~~~~~a~~iW~~~i~LL~~~~~~~w~~~n-~wL~v~e~cFn~~d~~~k~~  293 (372)
T PF12231_consen  216 VLEDLQRSLENGKLIQLYCERLKEMIKSK-DEYKLAMQIWSVVILLLGSSRLDSWEHLN-EWLKVPEKCFNSSDPQVKIQ  293 (372)
T ss_pred             HHHHhccccccccHHHHHHHHHHHHHhCc-CCcchHHHHHHHHHHHhCCchhhccHhHh-HHHHHHHHHhcCCCHHHHHH
Confidence             11222    12     344477777774 344444445544433333221 1111111 24555555677899999999


Q ss_pred             HHHHHHHHhC
Q 014945          388 AAWAISNATS  397 (415)
Q Consensus       388 a~~aL~nl~~  397 (415)
                      |..|-..+..
T Consensus       294 A~~aW~~liy  303 (372)
T PF12231_consen  294 AFKAWRRLIY  303 (372)
T ss_pred             HHHHHHHHHH
Confidence            9888877764

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=93.79  E-value=5.8  Score=37.05  Aligned_cols=306  Identities=15%  Similarity=0.158  Sum_probs=156.9

Q ss_pred             CCCHHHHHHHHHHHHHHhccCCCCchh-HHHhcCchHHHHHhhc----C------CCChHHHHHHHHHHHHHhCCCchhh
Q 014945           82 SDDRNIQLDATTQFRKLLSIERSPPIN-EVIQSGVVPRFIEFLS----R------DDFPQLQFEAAWALTNIASGTSENT  150 (415)
Q Consensus        82 ~~~~~~~~~a~~~l~~l~~~~~~~~~~-~~~~~g~i~~L~~ll~----~------~~~~~i~~~a~~~L~~l~~~~~~~~  150 (415)
                      +.+.+.+..|-..|.+.+...++.+.. .+.+  -++.|+++++    +      +.+..+-.+|+.+|+.+... ++..
T Consensus         4 ~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~--k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~-~~i~   80 (372)
T PF12231_consen    4 GSDRSSRLDAYMTLNNALKAYDNLPDRQALQD--KMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYH-PEIV   80 (372)
T ss_pred             cCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHcc-HHHH
Confidence            345556666666666665544322222 2222  2444444433    1      11267888999999998874 4444


Q ss_pred             HHHHhC---CChHHHHHhhCC--CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhc---c-chhHhHHHHHH
Q 014945          151 RVVIDH---GAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---E-HAKLSMLRNAT  221 (415)
Q Consensus       151 ~~~~~~---g~i~~L~~ll~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~---~-~~~~~~~~~a~  221 (415)
                      ..+-+.   -++...+..+.+  .+..+...++|+|..--...     .+.....+..++..+.   + -++..+....+
T Consensus        81 ~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~-----~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL  155 (372)
T PF12231_consen   81 STLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSP-----KIMTSDRVERLLAALHNIKNRFPSKSIISERL  155 (372)
T ss_pred             hhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCC-----cccchhhHHHHHHHHHHhhccCCchhHHHHHH
Confidence            333322   135556666644  34567778888887543222     2333334445555442   2 34567788888


Q ss_pred             HHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc--CCh-HHHH---HHHH----cC-----cHH
Q 014945          222 WTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD--GTN-DKIQ---AVIE----AG-----VCP  286 (415)
Q Consensus       222 ~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~--~~~-~~~~---~~~~----~~-----~i~  286 (415)
                      .++.++....|..-......=+|.++..+-+....++..|......+..  +.+ ....   ...+    .+     +.+
T Consensus       156 ~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  235 (372)
T PF12231_consen  156 NIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCE  235 (372)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHH
Confidence            8888888765433222333346677766666777777766555544431  111 1111   1111    12     334


Q ss_pred             HHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHh---cCCHHHHHH
Q 014945          287 RLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT---AGNVNQIQA  363 (415)
Q Consensus       287 ~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~---~~~~~~~~~  363 (415)
                      .|..++.+.+......-+|..--..-+.+.....-.-...+...-..++++ ++.+|..|..+=..+.   ..++.....
T Consensus       236 ~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~-d~~~k~~A~~aW~~liy~~~~~~~~~~k  314 (372)
T PF12231_consen  236 RLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSS-DPQVKIQAFKAWRRLIYASNPNELTSPK  314 (372)
T ss_pred             HHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhcCCccccHH
Confidence            466666664444444444443333333321111111113455555567777 8888887765433333   222332233


Q ss_pred             HHHcCCHHHHHHHhcc-CCH----HHHHHHHHHHHHHhC
Q 014945          364 IIEAGIIGPLVNLLLN-AEF----EIKKEAAWAISNATS  397 (415)
Q Consensus       364 l~~~~~i~~L~~~l~~-~~~----~v~~~a~~aL~nl~~  397 (415)
                      .+.- +..++...++. ...    +++..+...++++..
T Consensus       315 ~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly  352 (372)
T PF12231_consen  315 RLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLY  352 (372)
T ss_pred             HHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHH
Confidence            3332 33344444443 233    677888888888863

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=93.75  E-value=3.9  Score=41.22  Aligned_cols=196  Identities=16%  Similarity=0.126  Sum_probs=108.2

Q ss_pred             chHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCC----CCHHHHHHHHHHHHHhcC----
Q 014945          115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS----PTDDVREQAVWALGNVAG----  186 (415)
Q Consensus       115 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~----~~~~v~~~a~~~L~nl~~----  186 (415)
                      .+..+.+++.+..  ---..|++.|..+......-...     .+..+..++.+    .++.++..|+-+++.+..    
T Consensus       396 av~~i~~~I~~~~--~~~~ea~~~l~~l~~~~~~Pt~e-----~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~  468 (618)
T PF01347_consen  396 AVKFIKDLIKSKK--LTDDEAAQLLASLPFHVRRPTEE-----LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV  468 (618)
T ss_dssp             HHHHHHHHHHTT---S-HHHHHHHHHHHHHT-----HH-----HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCC--CCHHHHHHHHHHHHhhcCCCCHH-----HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence            3556667777643  22233445555544432122222     35556666664    456788888888888752    


Q ss_pred             CC-----chhHHHHHhcCChHHHHHHhc---cchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCC---Ch
Q 014945          187 DS-----PKCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN---DD  255 (415)
Q Consensus       187 ~~-----~~~~~~~~~~g~i~~L~~~l~---~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~---d~  255 (415)
                      ..     ............++.+...+.   ...+..-+..++.+|.|+-.          ...++.+.+.+...   +.
T Consensus       469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~  538 (618)
T PF01347_consen  469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPH  538 (618)
T ss_dssp             T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-H
T ss_pred             cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccch
Confidence            21     001112222335677777774   23355777888999999864          35778888888766   67


Q ss_pred             hHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCC--CChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHH
Q 014945          256 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL  333 (415)
Q Consensus       256 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~l  333 (415)
                      .++..|++++..+....++...        +.+++++.+  .+.++|..|+..|-.   ..|..       ..+..+...
T Consensus       539 ~~R~~Ai~Alr~~~~~~~~~v~--------~~l~~I~~n~~e~~EvRiaA~~~lm~---~~P~~-------~~l~~i~~~  600 (618)
T PF01347_consen  539 FIRVAAIQALRRLAKHCPEKVR--------EILLPIFMNTTEDPEVRIAAYLILMR---CNPSP-------SVLQRIAQS  600 (618)
T ss_dssp             HHHHHHHHTTTTGGGT-HHHHH--------HHHHHHHH-TTS-HHHHHHHHHHHHH---T---H-------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCcHHHH--------HHHHHHhcCCCCChhHHHHHHHHHHh---cCCCH-------HHHHHHHHH
Confidence            8999999999998777665533        667777654  356788888765533   22322       235567777


Q ss_pred             hcCCCccchHHH
Q 014945          334 LTQNYKKSIKKE  345 (415)
Q Consensus       334 l~~~~~~~v~~~  345 (415)
                      +....+..|...
T Consensus       601 l~~E~~~QV~sf  612 (618)
T PF01347_consen  601 LWNEPSNQVASF  612 (618)
T ss_dssp             HTT-S-HHHHHH
T ss_pred             HhhCchHHHHHH
Confidence            765534444443

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=93.71  E-value=6.3  Score=37.18  Aligned_cols=190  Identities=13%  Similarity=0.132  Sum_probs=117.7

Q ss_pred             HHHhhcCCCChHHHHHHHHHHHHHhCCCc---hhhHHHHhCCChHHHHHhhCC-------CCHHHHHHHHHHHHHhcCCC
Q 014945          119 FIEFLSRDDFPQLQFEAAWALTNIASGTS---ENTRVVIDHGAVPIFVRLLSS-------PTDDVREQAVWALGNVAGDS  188 (415)
Q Consensus       119 L~~ll~~~~~~~i~~~a~~~L~~l~~~~~---~~~~~~~~~g~i~~L~~ll~~-------~~~~v~~~a~~~L~nl~~~~  188 (415)
                      +..++...+ .+-|+.|+...+.++.+.+   ..++.+.+.=+++.+-+++.+       ++.-.+..++..|.-+|.+.
T Consensus        16 ~~~L~~~k~-D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p   94 (698)
T KOG2611|consen   16 CLKLLKGKR-DEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP   94 (698)
T ss_pred             HHHHhcccC-hHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence            556666666 7888999999999888543   344567777678888888865       34456777888888888765


Q ss_pred             chh-HHHHHhcCChHHHHHHhccchhHh------HHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHH-
Q 014945          189 PKC-RDLVLSNGALMPLLAQFNEHAKLS------MLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTD-  260 (415)
Q Consensus       189 ~~~-~~~~~~~g~i~~L~~~l~~~~~~~------~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~-  260 (415)
                      +-. ...++.  .||.|+..+.+..+++      +...+..+|..++...+........|.++.+.++-.-++...-.. 
T Consensus        95 ElAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~al  172 (698)
T KOG2611|consen   95 ELASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMAL  172 (698)
T ss_pred             hhccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHH
Confidence            421 122333  6888888886544444      888999999999988777777777899999987665443221111 


Q ss_pred             HHHHHHH----hccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCC
Q 014945          261 ACWALSY----LSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD  314 (415)
Q Consensus       261 a~~~l~~----l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~  314 (415)
                      ++..+.-    +-..+.. ...+..  ++..+..-+...+...+-..|+.|+.+....
T Consensus       173 al~Vlll~~~~~~cw~e~-~~~fla--li~~va~df~~~~~a~KfElc~lL~~vl~~~  227 (698)
T KOG2611|consen  173 ALKVLLLLVSKLDCWSET-IERFLA--LIAAVARDFAVLHNALKFELCHLLSAVLSSE  227 (698)
T ss_pred             HHHHHHHHHHhcccCcCC-HHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHhCC
Confidence            1111111    1112211 111221  1344444444445556777888888766543

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=93.69  E-value=1.1  Score=41.64  Aligned_cols=148  Identities=14%  Similarity=0.130  Sum_probs=85.8

Q ss_pred             HHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhc------CCChhHHHHHHHHHHH
Q 014945          194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH------SNDDEVLTDACWALSY  267 (415)
Q Consensus       194 ~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~------~~d~~v~~~a~~~l~~  267 (415)
                      .+.+..-.+.+-+-+..+...+-++.|+..+..|+..........+.   ..+..++.      +.+..-...|+..++.
T Consensus       205 ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~---~~i~~~l~~y~~~~~~~w~~KD~Al~Li~a  281 (370)
T PF08506_consen  205 ELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILM---QYIQQLLQQYASNPSNNWRSKDGALYLIGA  281 (370)
T ss_dssp             HHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-TTT-HHHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHhhCCcccHHHHHHHHHHHHH
Confidence            34444455555555533334456778888898998653221112222   22333333      2356677788888888


Q ss_pred             hccCChH------------HHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhc
Q 014945          268 LSDGTND------------KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT  335 (415)
Q Consensus       268 l~~~~~~------------~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~  335 (415)
                      ++.....            .+..++...++|.|. -=.+..+-++..|++.+...-..-+.  +.+  .+++|.++..|.
T Consensus       282 la~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~--~~l--~~~~~~l~~~L~  356 (370)
T PF08506_consen  282 LASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK--EQL--LQIFPLLVNHLQ  356 (370)
T ss_dssp             HHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H--HHH--HHHHHHHHHHTT
T ss_pred             HHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH--HHH--HHHHHHHHHHhC
Confidence            8754321            234455555666665 11234567888899998887765432  112  257999999999


Q ss_pred             CCCccchHHHHHHHH
Q 014945          336 QNYKKSIKKEACWTI  350 (415)
Q Consensus       336 ~~~~~~v~~~a~~~l  350 (415)
                      ++ +..|+..|+.++
T Consensus       357 ~~-~~vv~tyAA~~i  370 (370)
T PF08506_consen  357 SS-SYVVHTYAAIAI  370 (370)
T ss_dssp             SS--HHHHHHHHHHH
T ss_pred             CC-CcchhhhhhhhC
Confidence            99 999999999875

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.64  E-value=0.99  Score=44.28  Aligned_cols=193  Identities=16%  Similarity=0.132  Sum_probs=110.9

Q ss_pred             HhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC--C-CCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc--
Q 014945          196 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK--P-QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD--  270 (415)
Q Consensus       196 ~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~--~-~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~--  270 (415)
                      ++.|+++.++..-..-+...+....-.+|+.+....  . ........-.-|.|..-|+-.+..|+.+|+..+.++-.  
T Consensus       126 iE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~  205 (1005)
T KOG1949|consen  126 IENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIR  205 (1005)
T ss_pred             HhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCC
Confidence            456677776665433333334444444555555433  1 11222223445677888899999999999999998753  


Q ss_pred             CCh---HHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCCh----HHHHHHhcCCCccchH
Q 014945          271 GTN---DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQAL----PCLLDLLTQNYKKSIK  343 (415)
Q Consensus       271 ~~~---~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l----~~L~~ll~~~~~~~v~  343 (415)
                      +++   +..+.+++. =...+.++|.++-+.+|..|..-+..+...    ...++....+    ..+..-+......+||
T Consensus       206 dpd~~~e~mD~i~~k-Qf~~l~~LL~d~~p~VRS~a~~gv~k~~s~----fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR  280 (1005)
T KOG1949|consen  206 DPDLHAEEMDSIIQK-QFEELYSLLEDPYPMVRSTAILGVCKITSK----FWEMIPPTILIDLLKKITDELAFDTSSDVR  280 (1005)
T ss_pred             CCCccHHHHHHHHHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHHH----HHHHcCHHHHHHHHHHHHHHhhhccchhee
Confidence            222   223334433 347799999999999999988777766542    2223322222    2233222222255677


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHh
Q 014945          344 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT  396 (415)
Q Consensus       344 ~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~  396 (415)
                      ......|-.+... |. ...+.+. ++|.|-..|.+...+||-++...|..+-
T Consensus       281 ~svf~gl~~~l~n-p~-sh~~le~-~Lpal~~~l~D~se~VRvA~vd~ll~ik  330 (1005)
T KOG1949|consen  281 CSVFKGLPMILDN-PL-SHPLLEQ-LLPALRYSLHDNSEKVRVAFVDMLLKIK  330 (1005)
T ss_pred             hhHhcCcHHHHcC-cc-chhHHHH-HHHhcchhhhccchhHHHHHHHHHHHHH
Confidence            7777666666653 11 1222332 4556666667777777777766666553

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=93.62  E-value=1.5  Score=44.47  Aligned_cols=195  Identities=18%  Similarity=0.212  Sum_probs=118.9

Q ss_pred             HHHHHhCCCchhhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChH--HHHHHhccchhH
Q 014945          138 ALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALM--PLLAQFNEHAKL  214 (415)
Q Consensus       138 ~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~--~L~~~l~~~~~~  214 (415)
                      ++.++...+++....+++.|++..+...+.. .+.+++..++..++|++...+. +........+.  .+-.++.+..+.
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~-~~~~~~~~~~~~~~f~~~~~~w~~~  572 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLEL-RELLMIFEFIDFSVFKVLLNKWDSI  572 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhh-hhhhhHHHHHHHHHHHHHHhhcchh
Confidence            6778888889999999999999999999986 5678999999999999965532 22221111222  333344344455


Q ss_pred             hHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcC-
Q 014945          215 SMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-  293 (415)
Q Consensus       215 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~-  293 (415)
                      +.-..++..++.+....+......              .-+.+......++.......   +......-+.+.+..++. 
T Consensus       573 ersY~~~siLa~ll~~~~~~~~~~--------------~r~~~~~~l~e~i~~~~~~~---~~~~~~~~f~~~~~~il~~  635 (699)
T KOG3665|consen  573 ERSYNAASILALLLSDSEKTTECV--------------FRNSVNELLVEAISRWLTSE---IRVINDRSFFPRILRILRL  635 (699)
T ss_pred             hHHHHHHHHHHHHHhCCCcCcccc--------------chHHHHHHHHHHhhccCccc---eeehhhhhcchhHHHHhcc
Confidence            777788888887776542211000              01122222222333322211   111111112221444443 


Q ss_pred             CCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHH
Q 014945          294 HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI  350 (415)
Q Consensus       294 ~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l  350 (415)
                      +..+..+..|+|++.+++...++....+.+.|+++.+.+.-.......++.++...+
T Consensus       636 s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  692 (699)
T KOG3665|consen  636 SKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVI  692 (699)
T ss_pred             cCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHh
Confidence            345678899999999999998888888888899988888766553344444444443

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=93.39  E-value=0.81  Score=36.89  Aligned_cols=146  Identities=10%  Similarity=0.085  Sum_probs=86.8

Q ss_pred             hhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhc-CCCChhhHHHHHHHHHHhhcCChH
Q 014945          239 TRPALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGDDM  316 (415)
Q Consensus       239 ~~~~l~~l~~lL~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~l~nl~~~~~~  316 (415)
                      ...+++.|..+|+++ +..++.+++++++.+..-++...+.+... . +   ..- ...+.......+... +.....++
T Consensus         8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~-~-~---~~~~~~~~~~~~~~~l~~~-~~~~~~ee   81 (160)
T PF11865_consen    8 YPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS-L-D---SKSSENSNDESTDISLPMM-GISPSSEE   81 (160)
T ss_pred             hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc-C-C---ccccccccccchhhHHhhc-cCCCchHH
Confidence            356788888888766 58899999999999988777654422111 0 1   000 111111222222111 12112222


Q ss_pred             HHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHH
Q 014945          317 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA  395 (415)
Q Consensus       317 ~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl  395 (415)
                          ..-..++..|+.+|+++.-..-+..+..++.++... .... -..+.. ++|.+++.+...+...++...+-|+.+
T Consensus        82 ----~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~-viP~~l~~i~~~~~~~~e~~~~qL~~l  155 (160)
T PF11865_consen   82 ----YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQ-VIPIFLRVIRTCPDSLREFYFQQLADL  155 (160)
T ss_pred             ----HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHH-HhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence                223345678888888773445555677787777742 1222 233333 899999999987778888888888776


Q ss_pred             h
Q 014945          396 T  396 (415)
Q Consensus       396 ~  396 (415)
                      .
T Consensus       156 v  156 (160)
T PF11865_consen  156 V  156 (160)
T ss_pred             H
Confidence            5

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]

Probab=93.37  E-value=3.7  Score=40.23  Aligned_cols=252  Identities=15%  Similarity=0.207  Sum_probs=126.0

Q ss_pred             hHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCC--HHHHHHHHHHHHHhcCCCchhHH
Q 014945          116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPT--DDVREQAVWALGNVAGDSPKCRD  193 (415)
Q Consensus       116 i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~--~~v~~~a~~~L~nl~~~~~~~~~  193 (415)
                      +-.|...+++++ ..++..|+.-|+-.-.++  +++.+..     .|..++.+.+  .++...|..+|+.+..++..  .
T Consensus       454 lALLsdyv~~~~-s~~ri~aIlGLglayaGs--q~e~V~~-----lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn--~  523 (878)
T KOG2005|consen  454 LALLSDYLQSSS-SIHRIGAILGLGLAYAGS--QREEVLE-----LLSPIMFDTKSPMEVVAFASLSLGMIFVGSCN--E  523 (878)
T ss_pred             HHHHHHhccCCC-ceeehHHhhhhHHhhcCC--chHHHHH-----HHhHHhcCCCCchhHHHHHHhhcceeEEecCC--h
Confidence            445667777777 788888888887655442  3333321     4555665543  45777788888888754431  1


Q ss_pred             HHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc---c
Q 014945          194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS---D  270 (415)
Q Consensus       194 ~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~---~  270 (415)
                      .+ ...+++.++..=.........+.....|.-+..+..        ..+...+.-+..-...++..+-..+..++   .
T Consensus       524 dv-ts~ilqtlmekse~El~d~~~RFL~LGL~llflgkq--------e~~d~~~e~~~~i~~~~~~~~~~lv~~caYaGT  594 (878)
T KOG2005|consen  524 DV-TSSILQTLMEKSETELEDQWFRFLALGLALLFLGKQ--------ESVDAVVETIKAIEGPIRKHESILVKSCAYAGT  594 (878)
T ss_pred             HH-HHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHhccc--------chHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Confidence            11 111333333332111233445555555555554432        11122222222222222222211111111   1


Q ss_pred             CChHHHHHHHHcCcHHHHHHhcCCCC---hhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHH
Q 014945          271 GTNDKIQAVIEAGVCPRLVELLRHPS---PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEAC  347 (415)
Q Consensus       271 ~~~~~~~~~~~~~~i~~L~~lL~~~~---~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~  347 (415)
                      ++.-.++    .   ..+..+-....   ..-...|+--++-++.+.+-..+.     .+..+-.++..+ ++.+|+..-
T Consensus       595 Gnvl~Iq----~---q~ll~~cgE~~~~~e~~~~~avLgiAliAMgeeig~eM-----~lR~f~h~l~yg-e~~iRravP  661 (878)
T KOG2005|consen  595 GNVLKIQ----S---QLLLSFCGEHDADLESEQELAVLGIALIAMGEEIGSEM-----VLRHFGHLLHYG-EPHIRRAVP  661 (878)
T ss_pred             CceEEec----h---hhhhhhcCCCccchhhhccchhhhhhhhhhhhhhhhHH-----HHHHHHHHHHcC-CHHHHHHHH
Confidence            1111111    0   11222222111   122234555555666665533332     234556666777 778888877


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCHHHHHH
Q 014945          348 WTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY  406 (415)
Q Consensus       348 ~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~  406 (415)
                      .+++-++..+|..       +++..|-++..+.|.++...|+.+++-+-.+-+...+..
T Consensus       662 Lal~llsvSNPq~-------~vlDtLsk~shd~D~eva~naIfamGLiGAGTnNARla~  713 (878)
T KOG2005|consen  662 LALGLLSVSNPQV-------NVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTNNARLAQ  713 (878)
T ss_pred             HHHhhhccCCCcc-------hHHHHHHHhccCcchHHHHHHHHHhccccCCcchHHHHH
Confidence            8888777766643       266777777777888888888888777766555444433

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=93.37  E-value=2  Score=35.32  Aligned_cols=109  Identities=15%  Similarity=0.140  Sum_probs=78.0

Q ss_pred             HHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCC-------------------ChHHHHHHhcCCCccchHHHHH
Q 014945          287 RLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQ-------------------ALPCLLDLLTQNYKKSIKKEAC  347 (415)
Q Consensus       287 ~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~-------------------~l~~L~~ll~~~~~~~v~~~a~  347 (415)
                      .+--++.++++.+|..|+.++..+..+...+....-+.+                   +-..|...++.+.+..+....+
T Consensus        44 Llt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~l  123 (182)
T PF13251_consen   44 LLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLL  123 (182)
T ss_pred             hhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence            344456788999999999999999988764443333211                   2345666677766788888999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCC----HHHHHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945          348 WTISNITAGNVNQIQAIIEAGI----IGPLVNLLLNAEFEIKKEAAWAISNATSG  398 (415)
Q Consensus       348 ~~l~nl~~~~~~~~~~l~~~~~----i~~L~~~l~~~~~~v~~~a~~aL~nl~~~  398 (415)
                      .++..++..+|-.+-   +.|+    +..+..++.+.|++++..++.+++-+...
T Consensus       124 K~la~Lv~~tPY~rL---~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~  175 (182)
T PF13251_consen  124 KCLAVLVQATPYHRL---PPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV  175 (182)
T ss_pred             HHHHHHHccCChhhc---CHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence            999999987655432   2334    45555566779999999999999988754

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.96  E-value=11  Score=37.91  Aligned_cols=271  Identities=12%  Similarity=0.101  Sum_probs=139.4

Q ss_pred             hHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHh--CCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCCch-h
Q 014945          116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVID--HGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPK-C  191 (415)
Q Consensus       116 i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~ll~~-~~~~v~~~a~~~L~nl~~~~~~-~  191 (415)
                      -..+++++++.++..++..++..+.-...+-.-..+.+..  ......+..++.. +.-+.+...+.+|+.+.....+ .
T Consensus       528 Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I  607 (978)
T KOG1993|consen  528 YCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHI  607 (978)
T ss_pred             HHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhh
Confidence            3567788888754778888888888777653333333332  2334444445543 3334556677777766533221 1


Q ss_pred             HHHHHhcCChHHHHHHhccc-hhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCCh---hHHHHHHH----
Q 014945          192 RDLVLSNGALMPLLAQFNEH-AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDD---EVLTDACW----  263 (415)
Q Consensus       192 ~~~~~~~g~i~~L~~~l~~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~---~v~~~a~~----  263 (415)
                      +....+  ++..+-.+-..+ ..+-++...+.++.|+...-.........-++|.+-....-+.+   -..+++..    
T Consensus       608 ~P~~~~--ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~  685 (978)
T KOG1993|consen  608 APYAST--IVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLT  685 (978)
T ss_pred             hHHHHH--HHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHH
Confidence            111111  122222222223 34445666778888888765444444444445554443332222   13334332    


Q ss_pred             HHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhc-CChHHHHHHHHCCChHHHHHHhcCCCccch
Q 014945          264 ALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT-GDDMQTQCIINHQALPCLLDLLTQNYKKSI  342 (415)
Q Consensus       264 ~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~-~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v  342 (415)
                      .+.|.-.-.++    ++  +++|.+..++....+. ...++.++....- .+....+ -...|+.+.+..++.+- ..+-
T Consensus       686 ~L~n~~~l~p~----ll--~L~p~l~~~iE~ste~-L~t~l~Ii~sYilLd~~~fl~-~y~~~i~k~~~~~l~dv-r~eg  756 (978)
T KOG1993|consen  686 TLMNSQKLTPE----LL--LLFPHLLYIIEQSTEN-LPTVLMIISSYILLDNTVFLN-DYAFGIFKKLNDLLDDV-RNEG  756 (978)
T ss_pred             HHhcccccCHH----HH--HHHHHHHHHHHhhhhh-HHHHHHHHHHHHhhccHHHHH-HHHHHHHHHHHHHHHHh-hHHH
Confidence            33343222222    22  4577777777544433 3334444443332 2222111 12236777777777655 4444


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhc--cCCHHHHHHHHHHHHHHhCC
Q 014945          343 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL--NAEFEIKKEAAWAISNATSG  398 (415)
Q Consensus       343 ~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~--~~~~~v~~~a~~aL~nl~~~  398 (415)
                      ....+.++..+...++ ........++++.+..-+-  .+.|.+-..-+..++.+...
T Consensus       757 l~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~  813 (978)
T KOG1993|consen  757 LQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLR  813 (978)
T ss_pred             HHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhc
Confidence            4455555555555444 4556666778887776553  35577777777777777665

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=92.62  E-value=1.4  Score=36.99  Aligned_cols=137  Identities=16%  Similarity=0.216  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCC-----CChhhHHHHHHHHHHhhcCCh-HHHHHHHHCCChHHHH
Q 014945          258 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-----PSPSVLIPALRTVGNIVTGDD-MQTQCIINHQALPCLL  331 (415)
Q Consensus       258 ~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-----~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~~l~~L~  331 (415)
                      ..+++..+..++.+++.. ..++++.+--.+..+|..     .-+.++..+++++|.+....+ .....+....++|.++
T Consensus       117 vcnaL~lLQclaShPetk-~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL  195 (315)
T COG5209         117 VCNALNLLQCLASHPETK-KVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL  195 (315)
T ss_pred             HHHHHHHHHHHhcCcchh-eeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence            345666666666665543 557777665556666532     235688999999999998665 4455666779999999


Q ss_pred             HHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHH--------cCCHHHHHHHh-ccCCHHHHHHHHHHHHHHhC
Q 014945          332 DLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE--------AGIIGPLVNLL-LNAEFEIKKEAAWAISNATS  397 (415)
Q Consensus       332 ~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~--------~~~i~~L~~~l-~~~~~~v~~~a~~aL~nl~~  397 (415)
                      +++..+ +.--+--|++++..+..++ ...++++.        +.++..++.-+ +.+..++.+.|+.+-..++.
T Consensus       196 rIme~g-SElSktvaifI~qkil~dD-vGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd  268 (315)
T COG5209         196 RIMELG-SELSKTVAIFIFQKILGDD-VGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSD  268 (315)
T ss_pred             HHHHhh-hHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecC
Confidence            999988 7766777778887776532 22333332        22344444433 34677888888887776664

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=92.47  E-value=5.9  Score=36.81  Aligned_cols=232  Identities=16%  Similarity=0.163  Sum_probs=119.3

Q ss_pred             hHHHHHhhCC-CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC-CCCch
Q 014945          159 VPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLF  236 (415)
Q Consensus       159 i~~L~~ll~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~~  236 (415)
                      +..++.-+.+ ....+|..++--|+.-+.+. .++..+..+|....++..+....+..+...++.++..+...+ .....
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~-~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l  101 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCADP-QFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL  101 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhCCH-HHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence            4555555553 44568888888888777654 589999999999999999955544445555555555555443 33333


Q ss_pred             hhhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhc---------CCCChhhHHHHHHH
Q 014945          237 EQTRPALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL---------RHPSPSVLIPALRT  306 (415)
Q Consensus       237 ~~~~~~l~~l~~lL~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL---------~~~~~~v~~~a~~~  306 (415)
                      .........++.++.-. ..++.....      .... ....... .+....+...+         .+....-+..|+.+
T Consensus       102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~-~~lsk~~-~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~  173 (361)
T PF07814_consen  102 LLDRDSLRLLLKLLKVDKSLDVPSDSD------SSRK-KNLSKVQ-QKSRSLCKELLSSGSSWKSPKPPELSPQTLALLA  173 (361)
T ss_pred             hhchhHHHHHHHHhccccccccccchh------hhhh-hhhhHHH-HHHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence            22344555556666511 000000000      0000 0000000 01112122222         01223445566666


Q ss_pred             HHHhhc--------------CChHHHHHHHHCCChHHHHHHhcC----C------Ccc-----chHHHHHHHHHHHhcCC
Q 014945          307 VGNIVT--------------GDDMQTQCIINHQALPCLLDLLTQ----N------YKK-----SIKKEACWTISNITAGN  357 (415)
Q Consensus       307 l~nl~~--------------~~~~~~~~~~~~~~l~~L~~ll~~----~------~~~-----~v~~~a~~~l~nl~~~~  357 (415)
                      +-.++.              ..+...+.+.+.|+++.++..+.+    .      .++     ..-..+..+|-|.+..+
T Consensus       174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~  253 (361)
T PF07814_consen  174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS  253 (361)
T ss_pred             HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence            666631              011234455667889999988752    1      011     12244566666777655


Q ss_pred             HHHHHHHHH--cCCHHHHHHH-hc---cCCHHHHHHHHHHHHHHhCCC
Q 014945          358 VNQIQAIIE--AGIIGPLVNL-LL---NAEFEIKKEAAWAISNATSGG  399 (415)
Q Consensus       358 ~~~~~~l~~--~~~i~~L~~~-l~---~~~~~v~~~a~~aL~nl~~~~  399 (415)
                      +++..+++.  .+.++.+... +.   ....+....++..+.|++.+.
T Consensus       254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n  301 (361)
T PF07814_consen  254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNN  301 (361)
T ss_pred             ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCC
Confidence            555555553  2333333322 22   233445677888888888764

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=92.43  E-value=19  Score=39.11  Aligned_cols=113  Identities=17%  Similarity=0.200  Sum_probs=75.3

Q ss_pred             cCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHH
Q 014945          282 AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI  361 (415)
Q Consensus       282 ~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~  361 (415)
                      .|++|.|-.-|.+++..+|..|...+|.+....+.+.. --........+.-+.+. +..||.++.....++...+++..
T Consensus       258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~-~~~vR~~~v~~~~~~l~~~~~~~  335 (1266)
T KOG1525|consen  258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDI-SVEVRMECVESIKQCLLNNPSIA  335 (1266)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccC-ChhhhhhHHHHhHHHHhcCchhh
Confidence            37888888889999999999999999999986653322 00113444455555666 77888888877777766443322


Q ss_pred             HHH-----------------------------------HHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhC
Q 014945          362 QAI-----------------------------------IEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  397 (415)
Q Consensus       362 ~~l-----------------------------------~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~  397 (415)
                      ...                                   +.. ++..+-+.+.+....||+.|...|..+..
T Consensus       336 ~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk  405 (1266)
T KOG1525|consen  336 KASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYK  405 (1266)
T ss_pred             hHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            111                                   111 33344445566788999999998887765

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=92.28  E-value=11  Score=36.24  Aligned_cols=158  Identities=13%  Similarity=0.129  Sum_probs=112.7

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCC---ChHHHHHHHHHHHHHhCCCch
Q 014945           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD---FPQLQFEAAWALTNIASGTSE  148 (415)
Q Consensus        72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~---~~~i~~~a~~~L~~l~~~~~~  148 (415)
                      ....+.+.+.+++...+..|+..+..+ +.+ .....+++...++..|.+++.+..   +.++....+.++..+....--
T Consensus        84 ~a~~i~e~l~~~~~~~~~~a~k~l~sl-s~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvv  161 (713)
T KOG2999|consen   84 YAKRIMEILTEGNNISKMEALKELDSL-SLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVV  161 (713)
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHhhc-ccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhcee
Confidence            346788889999998998888888887 332 566788999889999999999865   245666677777666654332


Q ss_pred             hhHHHHhCCChHHHHHhhC--CCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHH
Q 014945          149 NTRVVIDHGAVPIFVRLLS--SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN  226 (415)
Q Consensus       149 ~~~~~~~~g~i~~L~~ll~--~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~  226 (415)
                      ..+.+.. .++.....+..  ..+..+-..|+..|-++...++..++.+.+.--+..|+..+ +..+..++..|...+..
T Consensus       162 sW~~~~~-~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hl-q~~n~~i~~~aial~na  239 (713)
T KOG2999|consen  162 SWESVSN-DFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHL-QVSNQRIQTCAIALLNA  239 (713)
T ss_pred             eeeeccc-HHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHH-HhcchHHHHHHHHHHHH
Confidence            2222221 22333333332  24566778899999999988887888888888899999999 77777788778777777


Q ss_pred             hhhCCCC
Q 014945          227 FCRGKPQ  233 (415)
Q Consensus       227 l~~~~~~  233 (415)
                      +....+.
T Consensus       240 l~~~a~~  246 (713)
T KOG2999|consen  240 LFRKAPD  246 (713)
T ss_pred             HHhhCCh
Confidence            7766543

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=92.23  E-value=1.6  Score=49.75  Aligned_cols=269  Identities=14%  Similarity=0.155  Sum_probs=139.3

Q ss_pred             hcCCCHHHHHHHHHHHHHHhccCCC--CchhHHH--hcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHh
Q 014945           80 VWSDDRNIQLDATTQFRKLLSIERS--PPINEVI--QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVID  155 (415)
Q Consensus        80 l~~~~~~~~~~a~~~l~~l~~~~~~--~~~~~~~--~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~  155 (415)
                      +...|++.+..+...++.++.....  ......+  ...++..+..+-....++.++......+.      ..+-.....
T Consensus       490 ~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~------~~~~~~laQ  563 (2341)
T KOG0891|consen  490 LEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN------ERFDAQLAQ  563 (2341)
T ss_pred             HhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc------cchhhhhcC
Confidence            3456677777776666655432211  0000001  11223333333222222555554444443      122222334


Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCc
Q 014945          156 HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL  235 (415)
Q Consensus       156 ~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~  235 (415)
                      .+.+..+...+.++.-.+++.+...+++++..+|...-..+....+..+..+. .+...-+......-+..+....+.-.
T Consensus       564 ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~-~sg~~r~~~~~a~~~~~~i~~~~~~i  642 (2341)
T KOG0891|consen  564 PDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELE-FSGMARTKEESAKLLCELIISSPVLI  642 (2341)
T ss_pred             chhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhh-hcchHHhHHHHHHHhhHHHHHHHHHH
Confidence            45566666677777888999999999999987774322222111111111111 11111011111111111111101111


Q ss_pred             hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCC-CChhhHHHHHHHHHHhhcCC
Q 014945          236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGD  314 (415)
Q Consensus       236 ~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~l~nl~~~~  314 (415)
                      ...+...+..++..+.+.+..+...+..+++.||.-........++ ..++.+.+.+.. .+..-+..++++++++....
T Consensus       643 ~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~  721 (2341)
T KOG0891|consen  643 SPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESST  721 (2341)
T ss_pred             HhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhccc
Confidence            2233445566777778888888888899999998655533333444 445555555543 34556788999999999765


Q ss_pred             hHHHHHHHH-CCChHHHHHHhcCCCccchHHHHHHHHHHHhcC
Q 014945          315 DMQTQCIIN-HQALPCLLDLLTQNYKKSIKKEACWTISNITAG  356 (415)
Q Consensus       315 ~~~~~~~~~-~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~  356 (415)
                      ........+ .-++..+...+.......++.++...++++...
T Consensus       722 ~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~  764 (2341)
T KOG0891|consen  722 GYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGAL  764 (2341)
T ss_pred             ceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhccc
Confidence            432222222 145666666666665677888888888877664

>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor

Probab=92.20  E-value=5.7  Score=40.20  Aligned_cols=158  Identities=16%  Similarity=0.211  Sum_probs=109.9

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh
Q 014945           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  150 (415)
Q Consensus        71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  150 (415)
                      ..|..|+..|.|+|......+-..+...+...+ ++   +    ++..|+++.-+.+    -..|+.+|..+-.  |..+
T Consensus         4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~-~~---~----l~~~l~~y~~~t~----s~~~~~il~~~~~--P~~K   69 (668)
T PF04388_consen    4 ASITELLSLLESNDLSVLEEIKALLQELLNSDR-EP---W----LVNGLVDYYLSTN----SQRALEILVGVQE--PHDK   69 (668)
T ss_pred             ccHHHHHHHhcCCchhhHHHHHHHHHHHhhccc-hH---H----HHHHHHHHHhhcC----cHHHHHHHHhcCC--ccHH
Confidence            357899999999999888888888887765431 11   1    3666777655444    1345666665432  4333


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhC
Q 014945          151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  230 (415)
Q Consensus       151 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~  230 (415)
                      .      .+..|-.++..  +.-|-.++..|+.+....|..-..+.+...+..|+.+|..+.+..+...|+.+|.-|.-.
T Consensus        70 ~------~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~  141 (668)
T PF04388_consen   70 H------LFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPH  141 (668)
T ss_pred             H------HHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcc
Confidence            2      24455566654  456778999999999887777788889999999999998888999999999999888865


Q ss_pred             CCCCchhhhhchHHHHHHhh
Q 014945          231 KPQPLFEQTRPALPALERLI  250 (415)
Q Consensus       231 ~~~~~~~~~~~~l~~l~~lL  250 (415)
                      .+.........++.+...++
T Consensus       142 ip~~l~~~L~~Lf~If~Rl~  161 (668)
T PF04388_consen  142 IPSSLGPHLPDLFNIFGRLL  161 (668)
T ss_pred             ccchhhHHHHHHHHHHHHHH
Confidence            55444444445555555554

The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=92.14  E-value=9.4  Score=35.02  Aligned_cols=112  Identities=20%  Similarity=0.205  Sum_probs=82.9

Q ss_pred             HHHHHHhcCCCChhhHHHHHHHHHHhhc-CChHHHHHHHHC-CC-hHHHHHHhcCCC----c--------cchHHHHHHH
Q 014945          285 CPRLVELLRHPSPSVLIPALRTVGNIVT-GDDMQTQCIINH-QA-LPCLLDLLTQNY----K--------KSIKKEACWT  349 (415)
Q Consensus       285 i~~L~~lL~~~~~~v~~~a~~~l~nl~~-~~~~~~~~~~~~-~~-l~~L~~ll~~~~----~--------~~v~~~a~~~  349 (415)
                      +..+...|+...+.+..++++.|..++. ........++.. ++ .+.+.+++....    +        +.+|......
T Consensus        58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F  137 (330)
T PF11707_consen   58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF  137 (330)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence            7888889998888899999999999999 555666666654 32 345666663321    1        2788877755


Q ss_pred             HHH-HhcCCHHHHHHHHH-cCCHHHHHHHhccCCHHHHHHHHHHHHHHh
Q 014945          350 ISN-ITAGNVNQIQAIIE-AGIIGPLVNLLLNAEFEIKKEAAWAISNAT  396 (415)
Q Consensus       350 l~n-l~~~~~~~~~~l~~-~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~  396 (415)
                      +.. +..+++.....+++ .+.+..+.+-|..+++++....+.+|..-.
T Consensus       138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~V  186 (330)
T PF11707_consen  138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKV  186 (330)
T ss_pred             HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHh
Confidence            554 44578888878775 667889999999888999999998888644

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=91.89  E-value=13  Score=35.94  Aligned_cols=156  Identities=13%  Similarity=0.138  Sum_probs=110.6

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccch---hHhHHHHHHHHHHHhhhCCCCCc
Q 014945          159 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA---KLSMLRNATWTLSNFCRGKPQPL  235 (415)
Q Consensus       159 i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~---~~~~~~~a~~~l~~l~~~~~~~~  235 (415)
                      ...+...+.+++..-+..++..+..++.+.. +...++...++..|..++.+..   +.++....+.+++.+-...- ..
T Consensus        85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~-fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-vs  162 (713)
T KOG2999|consen   85 AKRIMEILTEGNNISKMEALKELDSLSLDPT-FAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-VS  162 (713)
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHhhccccHH-HHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-ee
Confidence            3456667777776666668888888887766 5677788889999999985433   45677777777777766532 22


Q ss_pred             hhhh-hchHHHHHHhh--cCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 014945          236 FEQT-RPALPALERLI--HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT  312 (415)
Q Consensus       236 ~~~~-~~~l~~l~~lL--~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~  312 (415)
                      +... ..++-....+.  +-.+..+...|+..+-++.-+++...+.+.+.--++.|+..+...+..++..|+..+..+..
T Consensus       163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~  242 (713)
T KOG2999|consen  163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR  242 (713)
T ss_pred             eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence            2111 22222233332  33466788889999999988888777778888889999999999998899888888888876


Q ss_pred             CChH
Q 014945          313 GDDM  316 (415)
Q Consensus       313 ~~~~  316 (415)
                      ..++
T Consensus       243 ~a~~  246 (713)
T KOG2999|consen  243 KAPD  246 (713)
T ss_pred             hCCh
Confidence            5543

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=91.52  E-value=7.2  Score=32.39  Aligned_cols=74  Identities=19%  Similarity=0.244  Sum_probs=57.6

Q ss_pred             chHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHH
Q 014945          115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL  194 (415)
Q Consensus       115 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~  194 (415)
                      .++.++++..+++ ..++..|+.++.-+....--+..     ..+|.++.+..++++.++..|...+..+....+..-+.
T Consensus         9 yl~~Il~~~~~~~-~~vr~~Al~~l~~il~qGLvnP~-----~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~   82 (187)
T PF12830_consen    9 YLKNILELCLSSD-DSVRLAALQVLELILRQGLVNPK-----QCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVES   82 (187)
T ss_pred             HHHHHHHHHhCCC-HHHHHHHHHHHHHHHhcCCCChH-----HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHH
Confidence            4677778778888 89999999999887764322222     25899999999999999999999999998766544333

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=91.43  E-value=1.3  Score=37.21  Aligned_cols=97  Identities=9%  Similarity=0.076  Sum_probs=72.8

Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCC----CccchHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHH
Q 014945          301 IPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN----YKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVN  375 (415)
Q Consensus       301 ~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~----~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~i~~L~~  375 (415)
                      ..|+..+.-+++. ++....++++.+--.+..++...    ....+|-.+..+++.+.. +++..+..+....++|.+++
T Consensus       118 cnaL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr  196 (315)
T COG5209         118 CNALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR  196 (315)
T ss_pred             HHHHHHHHHHhcC-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence            3455556555554 55666667776655555666332    245688999999999998 68888888889999999999


Q ss_pred             HhccCCHHHHHHHHHHHHHHhCC
Q 014945          376 LLLNAEFEIKKEAAWAISNATSG  398 (415)
Q Consensus       376 ~l~~~~~~v~~~a~~aL~nl~~~  398 (415)
                      +++.++.--+..|+..+..+..+
T Consensus       197 Ime~gSElSktvaifI~qkil~d  219 (315)
T COG5209         197 IMELGSELSKTVAIFIFQKILGD  219 (315)
T ss_pred             HHHhhhHHHHHHHHHHHHHHhcc
Confidence            99999888888888888888744

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=91.40  E-value=4  Score=41.42  Aligned_cols=128  Identities=18%  Similarity=0.163  Sum_probs=79.7

Q ss_pred             HHHHHHcCcHHHHHHhcCCC-C-------hhhHHHHHHHHHHhhcCChHHHHHHHH-----C---CChHHHHHHhcCC--
Q 014945          276 IQAVIEAGVCPRLVELLRHP-S-------PSVLIPALRTVGNIVTGDDMQTQCIIN-----H---QALPCLLDLLTQN--  337 (415)
Q Consensus       276 ~~~~~~~~~i~~L~~lL~~~-~-------~~v~~~a~~~l~nl~~~~~~~~~~~~~-----~---~~l~~L~~ll~~~--  337 (415)
                      .+.+.+.+.+..++++...+ +       .+....|+.+|.-+..-++.+.+ +..     .   .++..++..-.-.  
T Consensus       594 aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~-La~~~~~n~~aydGiaIiL~~a~g~~~  672 (1516)
T KOG1832|consen  594 AENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKA-LAHATLSNNRAYDGIAIILDAANGSNS  672 (1516)
T ss_pred             HHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHH-HHHHHhhcccccCceEEEeeccccccc
Confidence            34567777888888876422 2       34556677777666555544333 221     1   1333333322111  


Q ss_pred             -CccchHHHHHHHHHHHhcCCHHHH-----------------------------------HHHHHcCCHHHHHHHhccCC
Q 014945          338 -YKKSIKKEACWTISNITAGNVNQI-----------------------------------QAIIEAGIIGPLVNLLLNAE  381 (415)
Q Consensus       338 -~~~~v~~~a~~~l~nl~~~~~~~~-----------------------------------~~l~~~~~i~~L~~~l~~~~  381 (415)
                       .++++++.|..++.|+....|+.+                                   ..+..+++|..|+++|....
T Consensus       673 i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~  752 (1516)
T KOG1832|consen  673 IVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKN  752 (1516)
T ss_pred             ccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccC
Confidence             267889999999888876432211                                   12234678999999998744


Q ss_pred             H-----HHHHHHHHHHHHHhCCCCHHHH
Q 014945          382 F-----EIKKEAAWAISNATSGGSNEQI  404 (415)
Q Consensus       382 ~-----~v~~~a~~aL~nl~~~~~~~~~  404 (415)
                      |     .+|.-||.+|.-++.+.+-.||
T Consensus       753 P~t~aD~IRalAc~~L~GLaR~~tVrQI  780 (1516)
T KOG1832|consen  753 PPTTADCIRALACRVLLGLARDDTVRQI  780 (1516)
T ss_pred             CCCcHHHHHHHHHHHHhccccCcHHHHH
Confidence            3     5899999999999998776665

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=91.10  E-value=10  Score=33.37  Aligned_cols=177  Identities=18%  Similarity=0.160  Sum_probs=99.0

Q ss_pred             CchHHHHHhhcCCCChHHHHHHHHHHHHHhCCC-------chhhHHHHhCCChHHHHHhhCCCC----HHHHHHHHHHHH
Q 014945          114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT-------SENTRVVIDHGAVPIFVRLLSSPT----DDVREQAVWALG  182 (415)
Q Consensus       114 g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~-------~~~~~~~~~~g~i~~L~~ll~~~~----~~v~~~a~~~L~  182 (415)
                      |+-+.+++=+.++.   ....++..|..++...       .+.+-.+.=.+.+|.++.-+++++    ......++..|+
T Consensus        64 Glq~Ll~KGL~Ss~---t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La  140 (262)
T PF14225_consen   64 GLQPLLLKGLRSSS---TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALA  140 (262)
T ss_pred             hHHHHHhCccCCCC---cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHH
Confidence            34444455555543   3444555665555421       212222222345777777777766    234456667888


Q ss_pred             HhcCCCchhHHHHHhcCChHHHHHHhccch---hHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHH
Q 014945          183 NVAGDSPKCRDLVLSNGALMPLLAQFNEHA---KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLT  259 (415)
Q Consensus       183 nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~---~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~  259 (415)
                      .+|....        .+.+..++....+..   ..+....++..+..-..  |.    .....+-.+..+|.+..+.++.
T Consensus       141 ~~a~~~~--------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~--P~----~~~~~l~~Ll~lL~n~~~w~~~  206 (262)
T PF14225_consen  141 QVAEAQG--------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF--PD----HEFQILTFLLGLLENGPPWLRR  206 (262)
T ss_pred             HHHHhCC--------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC--ch----hHHHHHHHHHHHHhCCcHHHHH
Confidence            8874322        123444555443332   33344444444333221  21    2245566788889888899999


Q ss_pred             HHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 014945          260 DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT  312 (415)
Q Consensus       260 ~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~  312 (415)
                      .++..|..+....+-...  ...+++..+.++|..+.+   ..|+.++-++..
T Consensus       207 ~~L~iL~~ll~~~d~~~~--~~~dlispllrlL~t~~~---~eAL~VLd~~v~  254 (262)
T PF14225_consen  207 KTLQILKVLLPHVDMRSP--HGADLISPLLRLLQTDLW---MEALEVLDEIVT  254 (262)
T ss_pred             HHHHHHHHHhccccCCCC--cchHHHHHHHHHhCCccH---HHHHHHHHHHHh
Confidence            999999998766543322  455688899999977653   455555555443

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=90.80  E-value=7.6  Score=34.34  Aligned_cols=146  Identities=19%  Similarity=0.171  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHHHhCCCchhhHHHHhCC--ChHHHHHhhC----CCCHHHHHHHHHHHHHhcCCCchhHHHHHhcC--Ch
Q 014945          130 QLQFEAAWALTNIASGTSENTRVVIDHG--AVPIFVRLLS----SPTDDVREQAVWALGNVAGDSPKCRDLVLSNG--AL  201 (415)
Q Consensus       130 ~i~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~ll~----~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g--~i  201 (415)
                      +-+.-++..++-++.+ +.....+...+  +...+..++.    +..+..+-.++++++|+....+ .+..+....  .+
T Consensus        78 ~~~fP~lDLlRl~~l~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~-~~~~~~~~~~~~i  155 (268)
T PF08324_consen   78 ESRFPALDLLRLAALH-PPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP-GRQLLLSHFDSSI  155 (268)
T ss_dssp             CC-HHHHHHHHHHCCC-HCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC-CHHHHHCTHHTCH
T ss_pred             ccchhHHhHHHHHHhC-ccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc-cHHHHHhcccchH
Confidence            4466667777665553 44444443322  2344444332    2567788899999999988766 455555432  23


Q ss_pred             HHHHHHhccc---hhHhHHHHHHHHHHHhhhCC--CCCchhhhhchHHHHHHhh-cC-CChhHHHHHHHHHHHhccCChH
Q 014945          202 MPLLAQFNEH---AKLSMLRNATWTLSNFCRGK--PQPLFEQTRPALPALERLI-HS-NDDEVLTDACWALSYLSDGTND  274 (415)
Q Consensus       202 ~~L~~~l~~~---~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~l~~l~~lL-~~-~d~~v~~~a~~~l~~l~~~~~~  274 (415)
                      ...+..+...   .+..++..++..+.|++...  ..........++..+.+.+ .. .|+++...++-+++++...++.
T Consensus       156 ~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~  235 (268)
T PF08324_consen  156 LELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDS  235 (268)
T ss_dssp             HHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHH
T ss_pred             HHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChh
Confidence            3333333222   27788889999999998554  1112223344566666643 33 5899999999999999966655


Q ss_pred             HHH
Q 014945          275 KIQ  277 (415)
Q Consensus       275 ~~~  277 (415)
                      ...
T Consensus       236 ~~~  238 (268)
T PF08324_consen  236 AKQ  238 (268)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=90.61  E-value=2.9  Score=37.39  Aligned_cols=138  Identities=12%  Similarity=0.173  Sum_probs=77.2

Q ss_pred             chHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh-HHHHhCCChHHH----HHhhC--------CCCHHHHHHHHHHH
Q 014945          115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT-RVVIDHGAVPIF----VRLLS--------SPTDDVREQAVWAL  181 (415)
Q Consensus       115 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~-~~~~~~g~i~~L----~~ll~--------~~~~~v~~~a~~~L  181 (415)
                      ++|.++.++++.+ +.++..++.+|..+....+... ..+...|..+.+    ..++.        .+...+...+.-++
T Consensus       120 iiP~iL~llDD~~-~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L  198 (282)
T PF10521_consen  120 IIPPILNLLDDYS-PEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL  198 (282)
T ss_pred             HHhhHHHHhcCCC-HHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence            6899999999998 9999999999999998544333 235556654433    33333        23456777777788


Q ss_pred             HHhcCC----CchhHHHHHhcCChHHHHHHhccc---hhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCC
Q 014945          182 GNVAGD----SPKCRDLVLSNGALMPLLAQFNEH---AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN  253 (415)
Q Consensus       182 ~nl~~~----~~~~~~~~~~~g~i~~L~~~l~~~---~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~  253 (415)
                      ..++.-    +...+......-.-+.++.-+...   ..+.+....+..+..+...-..........++|.+.+.+.++
T Consensus       199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~np  277 (282)
T PF10521_consen  199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENP  277 (282)
T ss_pred             HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence            777421    111111111111111122222122   235666666666655555433333344456666666666554

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.23  E-value=31  Score=38.62  Aligned_cols=231  Identities=13%  Similarity=0.107  Sum_probs=128.6

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC-CCCchh
Q 014945          159 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFE  237 (415)
Q Consensus       159 i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~~~  237 (415)
                      +..++..+..+++..+..+..+++.++...+..  .+ -.+..+.++.-+.+..++-.+.--..++..+-++. ......
T Consensus       878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~--~f-~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~q  954 (2067)
T KOG1822|consen  878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSA--PF-VASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQ  954 (2067)
T ss_pred             HHHHhhhhccCChHHHHHHHHHHHHHHHhcccc--ch-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCch
Confidence            445555666788888888888888887544321  11 11245566666755566666666666677776665 333334


Q ss_pred             hhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCCh---hhHH------------
Q 014945          238 QTRPALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP---SVLI------------  301 (415)
Q Consensus       238 ~~~~~l~~l~~lL~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~---~v~~------------  301 (415)
                      .....+..+..+-+++ ++.|+..++.++..+...........+. -.+..+..+|-+..+   ++..            
T Consensus       955 hl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve-~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~ 1033 (2067)
T KOG1822|consen  955 HLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVE-PTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDE 1033 (2067)
T ss_pred             hcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHH-HHHHHHHHHcCCCCcchhhhhhhhccccccchhH
Confidence            4455667777777665 5699999999999988655443333332 233444444432211   1221            


Q ss_pred             -HHHHHHHHhhcCChH--HHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhc
Q 014945          302 -PALRTVGNIVTGDDM--QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL  378 (415)
Q Consensus       302 -~a~~~l~nl~~~~~~--~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~  378 (415)
                       ....++|.=..++..  .+..+ ..-.+-...-++.++ ++-+..++..++-++.--.+.+..  . .-+++.|..++.
T Consensus      1034 ~alittlgpeL~~N~~~d~t~~~-rts~la~~allls~~-d~lnqa~ai~clqqlhlFapr~~n--~-~~lV~~L~~~l~ 1108 (2067)
T KOG1822|consen 1034 DALITTLGPELGPNGDKDSTSTL-RTSCLAACALLLSHS-DPLNQAAAIKCLQQLHLFAPRHVN--L-DSLVLQLCSLLS 1108 (2067)
T ss_pred             HHHHHhcccccCCCCcccchhHH-HHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHhhcchhcc--H-HHHHHHHHHHhc
Confidence             122223322222221  11111 111222233344555 888999999999877653332110  1 115677777777


Q ss_pred             cCCHHHHHHHHHHHHHHhCC
Q 014945          379 NAEFEIKKEAAWAISNATSG  398 (415)
Q Consensus       379 ~~~~~v~~~a~~aL~nl~~~  398 (415)
                      +...-.|.....++..+...
T Consensus      1109 s~~~i~r~~~~~clrql~~R 1128 (2067)
T KOG1822|consen 1109 SSYLILRRASFSCLRQLVQR 1128 (2067)
T ss_pred             chhhhhhhhHHhhhhHHhHH
Confidence            66666666666666666654

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]

Probab=89.95  E-value=21  Score=35.16  Aligned_cols=114  Identities=12%  Similarity=0.067  Sum_probs=67.4

Q ss_pred             HHHHHHhcCCCC--hhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc---CCHH
Q 014945          285 CPRLVELLRHPS--PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA---GNVN  359 (415)
Q Consensus       285 i~~L~~lL~~~~--~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~---~~~~  359 (415)
                      +..+...+...+  +.-....||++|.++..-.+..+.-+--++++.|+.+..-. ..  +..-+-+-+|+.-   ..|.
T Consensus       483 i~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemK-rg--KdnKAVvASnIMyvvGQYpR  559 (1053)
T COG5101         483 IGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMK-RG--KDNKAVVASNIMYVVGQYPR  559 (1053)
T ss_pred             HHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHh-hc--CCcchhhecceeeeeccchH
Confidence            456666676554  45567799999999865443332222224566666655322 11  1111222333332   2222


Q ss_pred             HHH---HHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCHH
Q 014945          360 QIQ---AIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNE  402 (415)
Q Consensus       360 ~~~---~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~  402 (415)
                      ...   .++ .-++..|.++++..+..++..||.....++..++..
T Consensus       560 FLkahw~FL-kTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~h  604 (1053)
T COG5101         560 FLKAHWSFL-KTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVH  604 (1053)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHH
Confidence            221   112 236889999999999999999999999999777644

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=89.70  E-value=1.7  Score=44.33  Aligned_cols=131  Identities=14%  Similarity=0.138  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhh
Q 014945          171 DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI  250 (415)
Q Consensus       171 ~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL  250 (415)
                      +.++.+++-+|+++|--.....     ...+|.|++-|..++...++.+..-++.-+|...    .......+|.+...|
T Consensus       945 ~~vra~~vvTlakmcLah~~La-----Kr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y----Tam~d~YiP~I~~~L 1015 (1529)
T KOG0413|consen  945 DKVRAVGVVTLAKMCLAHDRLA-----KRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY----TAMTDRYIPMIAASL 1015 (1529)
T ss_pred             hHHHHHHHHHHHHHHhhhhHHH-----HHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH----HHHHHHhhHHHHHHh
Confidence            5678888999999985544322     2267889999988888889999988888888652    134467899999999


Q ss_pred             cCCChhHHHHHHHHHHHhccCChHHHHHHHHcC-cHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh
Q 014945          251 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAG-VCPRLVELLRHPSPSVLIPALRTVGNIVTGDD  315 (415)
Q Consensus       251 ~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~-~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~  315 (415)
                      .++++-|+..++-.|.+|.+..-..     -.| ++-+++.-|-+.+++++.-|=.+++.+.....
T Consensus      1016 ~Dp~~iVRrqt~ilL~rLLq~~~vK-----w~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~ 1076 (1529)
T KOG0413|consen 1016 CDPSVIVRRQTIILLARLLQFGIVK-----WNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEE 1076 (1529)
T ss_pred             cCchHHHHHHHHHHHHHHHhhhhhh-----cchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcC
Confidence            9999999999999999997543211     112 23333334446778899999999999886543

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=89.19  E-value=18  Score=33.22  Aligned_cols=156  Identities=17%  Similarity=0.114  Sum_probs=104.2

Q ss_pred             hHHHHHhhcCCCChHHHHHHHHHHHHHhC-CCchhhHHHHhC--CChHHHHHhhCC-----CC--------HHHHHHHHH
Q 014945          116 VPRFIEFLSRDDFPQLQFEAAWALTNIAS-GTSENTRVVIDH--GAVPIFVRLLSS-----PT--------DDVREQAVW  179 (415)
Q Consensus       116 i~~L~~ll~~~~~~~i~~~a~~~L~~l~~-~~~~~~~~~~~~--g~i~~L~~ll~~-----~~--------~~v~~~a~~  179 (415)
                      ++.+...|++.. ..+...++..|..++. ++......+...  --.+.+.+++.-     ..        +.+|...+.
T Consensus        58 ~k~lyr~L~~~~-~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~  136 (330)
T PF11707_consen   58 LKLLYRSLSSSK-PSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR  136 (330)
T ss_pred             HHHHHHHhCcCc-HHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence            678888898888 8888899999999998 666666666653  224456666532     11        278888888


Q ss_pred             HHHHhcC-CCchhHHHHHh-cCChHHHHHHhccchhHhHHHHHHHHHHH-hhhCCCCCc----hhhhhchHHHHHHhhcC
Q 014945          180 ALGNVAG-DSPKCRDLVLS-NGALMPLLAQFNEHAKLSMLRNATWTLSN-FCRGKPQPL----FEQTRPALPALERLIHS  252 (415)
Q Consensus       180 ~L~nl~~-~~~~~~~~~~~-~g~i~~L~~~l~~~~~~~~~~~a~~~l~~-l~~~~~~~~----~~~~~~~l~~l~~lL~~  252 (415)
                      .+..+.. .++..+..+++ .+.+..+..-| ..++.++....+.++.. +.....-..    .......+..|..+...
T Consensus       137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l-~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~  215 (330)
T PF11707_consen  137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGL-RKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSR  215 (330)
T ss_pred             HHHHHHccCCHHHHHHHHHcCchHHHHHhcc-cCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcc
Confidence            7766653 45555555554 45677777878 44677777777777774 444431111    12336678888887777


Q ss_pred             CCh----hHHHHHHHHHHHhccCCh
Q 014945          253 NDD----EVLTDACWALSYLSDGTN  273 (415)
Q Consensus       253 ~d~----~v~~~a~~~l~~l~~~~~  273 (415)
                      .++    .+...+-..+..+|..+.
T Consensus       216 ~~~~~~~~~~~~vh~fL~~lcT~p~  240 (330)
T PF11707_consen  216 DGEDEKSSVADLVHEFLLALCTDPK  240 (330)
T ss_pred             cCCcccchHHHHHHHHHHHHhcCCC
Confidence            766    777777777777775443

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=89.06  E-value=9.6  Score=30.90  Aligned_cols=115  Identities=16%  Similarity=0.200  Sum_probs=71.2

Q ss_pred             chHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhC--CChHHHHHhhCCC-CHHHHHHHHHHHHHhc---CCC
Q 014945          115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDH--GAVPIFVRLLSSP-TDDVREQAVWALGNVA---GDS  188 (415)
Q Consensus       115 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~L~~ll~~~-~~~v~~~a~~~L~nl~---~~~  188 (415)
                      .+..+..+|++.+ +.-+..++..+..++..++  .+.+.+.  ..+..++..|+.+ ...+.+.++.++..|.   .+.
T Consensus        26 l~~ri~~LL~s~~-~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~  102 (165)
T PF08167_consen   26 LVTRINSLLQSKS-AYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK  102 (165)
T ss_pred             HHHHHHHHhCCCC-hhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            4566788888888 7888888888877776432  3444343  3477888888874 4567888888888876   444


Q ss_pred             chhHHHHHhcCChHHHHHHhccc-hhHhHHHHHHHHHHHhhhCCCC
Q 014945          189 PKCRDLVLSNGALMPLLAQFNEH-AKLSMLRNATWTLSNFCRGKPQ  233 (415)
Q Consensus       189 ~~~~~~~~~~g~i~~L~~~l~~~-~~~~~~~~a~~~l~~l~~~~~~  233 (415)
                      |.....+... .++.++..+-+- .+......++.++..+....|.
T Consensus       103 p~l~Rei~tp-~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~pt  147 (165)
T PF08167_consen  103 PTLTREIATP-NLPKFIQSLLQLLQDSSCPETALDALATLLPHHPT  147 (165)
T ss_pred             CchHHHHhhc-cHHHHHHHHHHHHhccccHHHHHHHHHHHHHHCCc
Confidence            5443343322 244443332111 1145666777777777765443

>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species

Probab=88.98  E-value=15  Score=32.01  Aligned_cols=127  Identities=16%  Similarity=0.122  Sum_probs=67.7

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccch-hHhHHHHHHHHHHHhhhCCCCCc
Q 014945          157 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA-KLSMLRNATWTLSNFCRGKPQPL  235 (415)
Q Consensus       157 g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~-~~~~~~~a~~~l~~l~~~~~~~~  235 (415)
                      .+++.++++++.++..+    -..+|-.....-...-..+-.|-++.|..++.+.. +.-++..|+.++..+....+...
T Consensus        73 ~A~~~li~l~~~~~~~~----~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~R  148 (249)
T PF06685_consen   73 RALPPLIRLFSQDDDFL----EDLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISR  148 (249)
T ss_pred             hhHHHHHHHHcCCcchH----HHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCH
Confidence            56899999997655421    11122211111000011223455677777774433 66788999999999998876655


Q ss_pred             hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc-CChHHHHHHHHcCcHHH
Q 014945          236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSD-GTNDKIQAVIEAGVCPR  287 (415)
Q Consensus       236 ~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~-~~~~~~~~~~~~~~i~~  287 (415)
                      ...+.-+-..+-..+..++..+....+..+..|.. .-...++.+.+.|.++.
T Consensus       149 e~vi~~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~~~f~~~lVd~  201 (249)
T PF06685_consen  149 EEVIQYFRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIRKAFEDGLVDP  201 (249)
T ss_pred             HHHHHHHHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHHHHHHcCCCCc
Confidence            55554444445454655544444443333333321 11233455566666554

The function of this family is unknown.

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=88.96  E-value=1.5  Score=37.32  Aligned_cols=83  Identities=14%  Similarity=0.203  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHhccCCCCchhHHHhcC-------chHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh-HHHHhCC
Q 014945           86 NIQLDATTQFRKLLSIERSPPINEVIQSG-------VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT-RVVIDHG  157 (415)
Q Consensus        86 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~g-------~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~-~~~~~~g  157 (415)
                      .-|..|+++|+++.-.+  .+.+.++..+       ++..|++++....++..|+.|+-.|.+++.++.... ....+.+
T Consensus       139 SPqrlaLEaLcKLsV~e--~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~  216 (257)
T PF12031_consen  139 SPQRLALEALCKLSVIE--NNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP  216 (257)
T ss_pred             CHHHHHHHHHHHhheec--cCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence            56888999999985433  3444443333       566777888876658899999999999999876655 4444568


Q ss_pred             ChHHHHHhhCCCC
Q 014945          158 AVPIFVRLLSSPT  170 (415)
Q Consensus       158 ~i~~L~~ll~~~~  170 (415)
                      .|..|+.++.+..
T Consensus       217 ~i~~Li~FiE~a~  229 (257)
T PF12031_consen  217 CISHLIAFIEDAE  229 (257)
T ss_pred             hHHHHHHHHHHHH
Confidence            9999999997643

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=88.91  E-value=22  Score=33.97  Aligned_cols=198  Identities=11%  Similarity=0.103  Sum_probs=93.8

Q ss_pred             HhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCC-CCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChH
Q 014945          196 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP-QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND  274 (415)
Q Consensus       196 ~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~  274 (415)
                      ++...++.+..+| +.+-.+..-++...++.+.+..+ .........++|.|..---.....-.-...+.+..+....+.
T Consensus       114 ~E~~L~P~f~~IL-q~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~  192 (435)
T PF03378_consen  114 FEEALFPPFQEIL-QQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPS  192 (435)
T ss_dssp             HHHHHHHHHHHHH-HTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCch
Confidence            3444677788888 55555677777778887777654 233334455555544221111111112333334333322222


Q ss_pred             HHHHHHHcC----cHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHH-HHHHHHCCChHHHHHHhcCCCccchHHHHHHH
Q 014945          275 KIQAVIEAG----VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ-TQCIINHQALPCLLDLLTQNYKKSIKKEACWT  349 (415)
Q Consensus       275 ~~~~~~~~~----~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~-~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~  349 (415)
                      .   +...|    ++...-.++.+...  -..+...|..+...-+.. .+..+. .++..++.-|+++..++..+.-+..
T Consensus       193 ~---i~~~~~l~~iLgvFQkLi~sk~~--D~~gF~LL~~iv~~~p~~~l~~yl~-~I~~lll~RLq~skT~kf~~~fv~F  266 (435)
T PF03378_consen  193 F---IVANNQLEPILGVFQKLIASKAN--DHYGFDLLESIVENLPPEALEPYLK-QIFTLLLTRLQSSKTEKFVKRFVVF  266 (435)
T ss_dssp             G-------S-CHHHHHHHHHHHT-TTC--HHHHHHHHHHHHHHS-HHHHGGGHH-HHHHHHHHHHHHC--HHHHHHHHHH
T ss_pred             h---hcchhhHHHHHHHHHHHHCCCCc--chHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHhhCCcHHHHHHHHHH
Confidence            1   12222    23333344444432  245667777777655432 121111 3444555555544355666666666


Q ss_pred             HHHHhc-CCHHHHHHHHH---cCCHHHHHHHh-----cc-CCHHHHHHHHHHHHHHhCCCC
Q 014945          350 ISNITA-GNVNQIQAIIE---AGIIGPLVNLL-----LN-AEFEIKKEAAWAISNATSGGS  400 (415)
Q Consensus       350 l~nl~~-~~~~~~~~l~~---~~~i~~L~~~l-----~~-~~~~v~~~a~~aL~nl~~~~~  400 (415)
                      ++.++. .+++..-..++   .|++..++.-+     .. ..+.-|+.++-+++++...++
T Consensus       267 ~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es~  327 (435)
T PF03378_consen  267 LSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCESP  327 (435)
T ss_dssp             HHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSST
T ss_pred             HHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhccH
Confidence            665554 45555555554   46555555421     11 334567888888888775443

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=88.86  E-value=1.6  Score=34.31  Aligned_cols=74  Identities=12%  Similarity=0.080  Sum_probs=58.7

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhC
Q 014945           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS  144 (415)
Q Consensus        71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~  144 (415)
                      +++..+.+.|++.++.++..|+..|..+...-+.....++...+++..|++++.....+.++..++..+...+.
T Consensus        41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  114 (142)
T cd03569          41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL  114 (142)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence            46788889999999999999999999887654334445677888999999999854447899988888877664

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species

Probab=88.33  E-value=16  Score=31.73  Aligned_cols=117  Identities=25%  Similarity=0.333  Sum_probs=66.7

Q ss_pred             hchHHHHHHhhcCCChh--------HHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCC--ChhhHHHHHHHHHH
Q 014945          240 RPALPALERLIHSNDDE--------VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRTVGN  309 (415)
Q Consensus       240 ~~~l~~l~~lL~~~d~~--------v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~l~n  309 (415)
                      ..++|.++.++..++..        +-+..-.++..++            .|=++.|..++.++  +.-++..|+.++..
T Consensus        72 ~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~------------~G~~~~L~~li~~~~~~~yvR~aa~~aL~~  139 (249)
T PF06685_consen   72 ERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVG------------DGDIEPLKELIEDPDADEYVRMAAISALAF  139 (249)
T ss_pred             hhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHh------------CCCHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            46788999999765532        2222222333333            34456666777655  45689999999999


Q ss_pred             hhcCChHHHHHHHHCCChHHHHHH-hcCCCccchHHHHHHHHHHHhcC----CHHHHHHHHHcCCHHHHH
Q 014945          310 IVTGDDMQTQCIINHQALPCLLDL-LTQNYKKSIKKEACWTISNITAG----NVNQIQAIIEAGIIGPLV  374 (415)
Q Consensus       310 l~~~~~~~~~~~~~~~~l~~L~~l-l~~~~~~~v~~~a~~~l~nl~~~----~~~~~~~l~~~~~i~~L~  374 (415)
                      ++...+..+..+++.  +..++.. +...  +..  .-.+.+++++.-    --+.++.+.+.|+++..+
T Consensus       140 l~~~~~~~Re~vi~~--f~~ll~~~l~~~--~~~--~~~~Lv~~~~dL~~~EL~~~I~~~f~~~lVd~~~  203 (249)
T PF06685_consen  140 LVHEGPISREEVIQY--FRELLNYFLERN--PSF--LWGSLVADICDLYPEELLPEIRKAFEDGLVDPSF  203 (249)
T ss_pred             HHHcCCCCHHHHHHH--HHHHHHHHhccC--chH--HHHHHHHHHHhcCHHHhHHHHHHHHHcCCCCccc
Confidence            999887767765552  3333333 3322  222  122233455442    234456666778876644

The function of this family is unknown.

>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []

Probab=88.31  E-value=12  Score=38.49  Aligned_cols=145  Identities=17%  Similarity=0.198  Sum_probs=93.2

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (415)
Q Consensus        72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  151 (415)
                      -+..+...+.++++..-...+.++..+...+..++..   ...-++.-..-.+..- ..+......+|..++.-+++...
T Consensus       442 lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~-~~~~~~~~~il~rls~~~~~~L~  517 (727)
T PF12726_consen  442 LWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSL-GQITDLISQILERLSDFDPSHLK  517 (727)
T ss_pred             HHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHH-HHHHHHHHHHHHHHhcCCHHHHH
Confidence            3567777777888877777777777776544222222   1111122222222222 45677778899999998888777


Q ss_pred             HHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhC
Q 014945          152 VVID-HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  230 (415)
Q Consensus       152 ~~~~-~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~  230 (415)
                      .+.. .+....++.++-++++++.+.|...|........  |        .+.+-.++ +..-........+.+..+...
T Consensus       518 ~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~--R--------~e~i~~ll-~~~~~~tL~ai~~~l~~~~~~  586 (727)
T PF12726_consen  518 ELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDG--R--------LEAIQALL-QSNFSPTLSAINWSLRQLTKL  586 (727)
T ss_pred             HHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCc--H--------HHHHHHHH-HHhHHHHHHHHHHHHHHHHhh
Confidence            6665 6888999999999999999999999999875332  2        22333344 333344566677777777765


Q ss_pred             C
Q 014945          231 K  231 (415)
Q Consensus       231 ~  231 (415)
                      .
T Consensus       587 ~  587 (727)
T PF12726_consen  587 K  587 (727)
T ss_pred             h
Confidence            4

The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.

>PF11538 Snurportin1: Snurportin1; InterPro: IPR024721 Snurportin-1 is a nuclear import receptor that contains an N-terminal importin beta binding domain which is essential for its function as an snRNP-specific nuclear import receptor []

Probab=88.19  E-value=0.48  Score=27.70  Aligned_cols=38  Identities=34%  Similarity=0.394  Sum_probs=24.3

Q ss_pred             HHhhhccCCCCchHHHHhHHHHHHHHHHHhhhHHHHhhh
Q 014945           11 VRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKR   49 (415)
Q Consensus        11 ~~~~~~k~~~~~~~~r~~r~~~~~~lRk~~r~~~~~~~R   49 (415)
                      +|...||+..+..+.-++| +...+.-|.+|-+.++..|
T Consensus         2 PR~sqYK~~~~~~~Q~eRR-~~~Le~QK~kR~d~~~~aR   39 (40)
T PF11538_consen    2 PRLSQYKNKGSALDQEERR-REFLERQKNKRLDYVNHAR   39 (40)
T ss_dssp             TTCSCTT-TTTSCSHHHHH-HHHHHHHHSHHSHHHHHHH
T ss_pred             ccHHHhhcccchHhHHHHH-HHHHHHHHHHhHHHHHhcc
Confidence            6888999854444444444 4556777778877776665

Snurportin-1 interacts with m3G-cap where it enhances the m3G-cap dependent nuclear import of U snRNPs in Xenopus laevis oocytes and digitonin-permeabilized HeLa cells []. This entry represents the snurportin-1 N-terminal importin beta binding domain (IBB). The essential role of the IBB domain for snurportin-1 function suggests that snurportin-1 cooperates with importin beta in mediating nuclear import of snRNPs.; GO: 0005515 protein binding; PDB: 3LWW_D 3NC0_E 3NBZ_E 2Q5D_C 3NBY_B 3GB8_B 3GJX_B 2QNA_B 2P8Q_B.

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=87.98  E-value=2  Score=33.87  Aligned_cols=74  Identities=16%  Similarity=0.139  Sum_probs=59.8

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhC
Q 014945           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS  144 (415)
Q Consensus        71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~  144 (415)
                      +.+..+.+.|++.++.++..|+..|..+....+.....++...+++..|+.++.....+.++..++..+...+.
T Consensus        37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~  110 (144)
T cd03568          37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD  110 (144)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence            46778888899999999999999999987655344445677888999999999984338999999988887764

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=87.81  E-value=16  Score=34.84  Aligned_cols=228  Identities=9%  Similarity=0.039  Sum_probs=112.5

Q ss_pred             CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCC----CchhhhhchHH
Q 014945          169 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ----PLFEQTRPALP  244 (415)
Q Consensus       169 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~----~~~~~~~~~l~  244 (415)
                      +|+.+.....+++.-+-.+-......+++. .+..+....++..++..-.+...+++.+.+....    ........++|
T Consensus        42 ENeylMk~iMRvl~~~~e~~~p~~~~il~~-L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P  120 (435)
T PF03378_consen   42 ENEYLMKCIMRVLSVLQEDILPIAVEILQH-LTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFP  120 (435)
T ss_dssp             C-HHHHHHHHHHHHHSTTTTGGGHHHHHHH-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHH
T ss_pred             cchHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHH
Confidence            466677677777666655444343443332 2333333333445777777777777766654322    22234567789


Q ss_pred             HHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCC---ChhhHHHHHHHHHHhhcCChHHHHHH
Q 014945          245 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP---SPSVLIPALRTVGNIVTGDDMQTQCI  321 (415)
Q Consensus       245 ~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~---~~~v~~~a~~~l~nl~~~~~~~~~~~  321 (415)
                      .+...|+.+-.+..-++.-.++.+....+.  ..+ .......+-.+|...   ...-.-+..+.|.++....+...   
T Consensus       121 ~f~~ILq~dV~EF~PYvfQIla~Lle~~~~--~~~-p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i---  194 (435)
T PF03378_consen  121 PFQEILQQDVQEFIPYVFQILAQLLELRPS--SPL-PDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFI---  194 (435)
T ss_dssp             HHHHHHHTT-TTTHHHHHHHHHHHHHHSS----S---TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CCC-cHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhh---
Confidence            999999888777778888888877654330  001 111122222222221   11223445556666665443322   


Q ss_pred             HHC----CChHHHHHHhcCCCccchHHHHHHHHHHHhcCC-HHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHHHHHHHHH
Q 014945          322 INH----QALPCLLDLLTQNYKKSIKKEACWTISNITAGN-VNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNA  395 (415)
Q Consensus       322 ~~~----~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~-~~~~~~l~~~~~i~~L~~~l~~-~~~~v~~~a~~aL~nl  395 (415)
                      ...    +++..+-+++.+. ..  -..+...|..+...- .+..+..+.. ++..++.-|++ ..++..+.-+..++.+
T Consensus       195 ~~~~~l~~iLgvFQkLi~sk-~~--D~~gF~LL~~iv~~~p~~~l~~yl~~-I~~lll~RLq~skT~kf~~~fv~F~~~~  270 (435)
T PF03378_consen  195 VANNQLEPILGVFQKLIASK-AN--DHYGFDLLESIVENLPPEALEPYLKQ-IFTLLLTRLQSSKTEKFVKRFVVFLSLF  270 (435)
T ss_dssp             ---S-CHHHHHHHHHHHT-T-TC--HHHHHHHHHHHHHHS-HHHHGGGHHH-HHHHHHHHHHHC--HHHHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHHHHHHCCC-Cc--chHHHHHHHHHHHHCCHHHHHHHHHH-HHHHHHHHHhhCCcHHHHHHHHHHHHHH
Confidence            222    3344444666665 32  245677777777643 3344444443 56666666654 5566666666666666


Q ss_pred             hCCCCHHHHHHH
Q 014945          396 TSGGSNEQIKYK  407 (415)
Q Consensus       396 ~~~~~~~~~~~l  407 (415)
                      +..-+++.+-..
T Consensus       271 ~~~~g~~~li~~  282 (435)
T PF03378_consen  271 AIKYGPDFLIQT  282 (435)
T ss_dssp             HHHH-HHHHHHH
T ss_pred             HHHcCHHHHHHH
Confidence            544344444333

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=87.57  E-value=57  Score=37.17  Aligned_cols=273  Identities=12%  Similarity=0.123  Sum_probs=143.3

Q ss_pred             HHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH---HHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhcCCCchhHHH
Q 014945          119 FIEFLSRDDFPQLQFEAAWALTNIASGTSENTR---VVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDL  194 (415)
Q Consensus       119 L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~---~~~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~nl~~~~~~~~~~  194 (415)
                      ++..-.+++ ..+...|+..|..++..--+..+   .-.+...+.++..++. +.+.++++..+.|+.++.....   ..
T Consensus      1142 f~~vg~~~n-~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~---~n 1217 (1780)
T PLN03076       1142 FVTIGCSEN-LSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV---NN 1217 (1780)
T ss_pred             HHHhcCCcc-hhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH---hh
Confidence            444434445 67888888888777752221111   1112235666666555 4678999999999999864322   11


Q ss_pred             HHhcCChHHHHHHhc---cchhHhHHHHHHHHHHHhhhCC-C---CCchhhhhchHHHHHHhhcCC-ChhHHHHHHHHHH
Q 014945          195 VLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFCRGK-P---QPLFEQTRPALPALERLIHSN-DDEVLTDACWALS  266 (415)
Q Consensus       195 ~~~~g~i~~L~~~l~---~~~~~~~~~~a~~~l~~l~~~~-~---~~~~~~~~~~l~~l~~lL~~~-d~~v~~~a~~~l~  266 (415)
                       +.. +...++.++.   .+.++.+...+..++..++... +   .........++..+..+-... +.++--.|+..+.
T Consensus      1218 -IkS-GWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~ 1295 (1780)
T PLN03076       1218 -VKS-GWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLR 1295 (1780)
T ss_pred             -hhc-CcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHH
Confidence             233 4445555442   3456777777777777776553 2   111234455555555555433 3445445555444


Q ss_pred             Hhc----cCCh-----------------------HHHH-----HHHHcCcHHH---HHHhcCCCChhhHHHHHHHHHHhh
Q 014945          267 YLS----DGTN-----------------------DKIQ-----AVIEAGVCPR---LVELLRHPSPSVLIPALRTVGNIV  311 (415)
Q Consensus       267 ~l~----~~~~-----------------------~~~~-----~~~~~~~i~~---L~~lL~~~~~~v~~~a~~~l~nl~  311 (415)
                      +++    .+..                       +...     .......++.   |..+..++..+||..|+.+|-.+.
T Consensus      1296 ~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL 1375 (1780)
T PLN03076       1296 FCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTL 1375 (1780)
T ss_pred             HHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence            331    1000                       0000     0000122333   333345678899999999887776


Q ss_pred             cCCh-----HHHHHHHHCCChHHHHHHhcCCC----------------------ccchHHHHHHHHHHHhc---CCHHHH
Q 014945          312 TGDD-----MQTQCIINHQALPCLLDLLTQNY----------------------KKSIKKEACWTISNITA---GNVNQI  361 (415)
Q Consensus       312 ~~~~-----~~~~~~~~~~~l~~L~~ll~~~~----------------------~~~v~~~a~~~l~nl~~---~~~~~~  361 (415)
                      ....     +.=..++. +++-+++..+++..                      +..+...+..+|.+++.   ..-+.+
T Consensus      1376 ~~yG~~Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L 1454 (1780)
T PLN03076       1376 RNHGHLFSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTV 1454 (1780)
T ss_pred             HHhhccCCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4221     11122222 44455554443210                      00122333334444443   333333


Q ss_pred             HHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Q 014945          362 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG  399 (415)
Q Consensus       362 ~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~  399 (415)
                      ..+++ +++..|..++..++..+....+.+|.++...+
T Consensus      1455 ~~~L~-~~l~ll~~ci~q~n~~la~ig~~~l~~li~~n 1491 (1780)
T PLN03076       1455 NPLLK-KVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNA 1491 (1780)
T ss_pred             HHHHH-HHHHHHHHHHcCchHHHHHHHHHHHHHHHHHh
Confidence            34333 36667777777788889999999999998544

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=87.49  E-value=7.3  Score=35.87  Aligned_cols=213  Identities=18%  Similarity=0.116  Sum_probs=104.6

Q ss_pred             CchHHHHHhhcCCCChHHHHHHHHHHHHHhCCC-chhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhH
Q 014945          114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT-SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR  192 (415)
Q Consensus       114 g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~  192 (415)
                      .++..|..++..+.++......+.+++.-...- .+.     ...++..+..-+.+..+.+|..-+.+++.+....+...
T Consensus        22 ~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~-----~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~   96 (339)
T PF12074_consen   22 KIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSEL-----PKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSD   96 (339)
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCC-----CHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCch
Confidence            356777777776554666777777665533211 111     12346677777777777799888888888775111000


Q ss_pred             HHHHhcCChHHHHHHhccc---hhHhHH---HHHHHHHHHhhhCC-CCCch--h----hhhchHHHHH---HhhcC-CCh
Q 014945          193 DLVLSNGALMPLLAQFNEH---AKLSML---RNATWTLSNFCRGK-PQPLF--E----QTRPALPALE---RLIHS-NDD  255 (415)
Q Consensus       193 ~~~~~~g~i~~L~~~l~~~---~~~~~~---~~a~~~l~~l~~~~-~~~~~--~----~~~~~l~~l~---~lL~~-~d~  255 (415)
                      ..-.-..+++.|+..+...   +.+...   -.++.++..++... +....  .    ...+-=|.++   +++.. .++
T Consensus        97 ~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~~~  176 (339)
T PF12074_consen   97 SLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLASE  176 (339)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccCCH
Confidence            1111223667777776321   111101   01111111111111 00000  0    0000000000   11222 334


Q ss_pred             hHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCC--ChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHH
Q 014945          256 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL  333 (415)
Q Consensus       256 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~l  333 (415)
                      +-....+.++..+..+.......-.....-..++.++-++  .+.+|..|+.++..+....+..    +...++..+...
T Consensus       177 ~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~li~~l~~~  252 (339)
T PF12074_consen  177 EDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSLISGLWKW  252 (339)
T ss_pred             hHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHHHHH
Confidence            4444555566555543332211111223456788888777  8899999999999999887753    223344555555


Q ss_pred             hc
Q 014945          334 LT  335 (415)
Q Consensus       334 l~  335 (415)
                      +.
T Consensus       253 l~  254 (339)
T PF12074_consen  253 LS  254 (339)
T ss_pred             HH
Confidence            53

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=87.12  E-value=2.4  Score=32.92  Aligned_cols=74  Identities=9%  Similarity=0.021  Sum_probs=56.9

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChH-HHHHHHHHHHHHhC
Q 014945           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQ-LQFEAAWALTNIAS  144 (415)
Q Consensus        71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~-i~~~a~~~L~~l~~  144 (415)
                      .++..+.+.|++.++.++..|+..|-.++.....+...++...+++..|..+++...... ++..++..+...+.
T Consensus        37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~  111 (133)
T smart00288       37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD  111 (133)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence            467788889999999999999999999876543344456667889999999998765333 88888877766554

Unpublished observations. Domain of unknown function.

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.91  E-value=30  Score=35.28  Aligned_cols=282  Identities=12%  Similarity=0.098  Sum_probs=131.8

Q ss_pred             HHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHH-hhCCC--CHHHHHHHHHHHHHhcC
Q 014945          110 VIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR-LLSSP--TDDVREQAVWALGNVAG  186 (415)
Q Consensus       110 ~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-ll~~~--~~~v~~~a~~~L~nl~~  186 (415)
                      +.+.+.+...-+-|..+|...-|+.|+..+..++.........++. +.+..++. +..++  +..-.+.+++.+..++.
T Consensus       357 lFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~-~~v~~~l~~y~~nPS~nWk~kd~aiyL~talai  435 (960)
T KOG1992|consen  357 LFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFS-SEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAI  435 (960)
T ss_pred             HhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHH-HHHHHHHHHhccCCCccccccchhhhhhHHHHh
Confidence            3444455555555555552233556666777777754323233332 22333333 33333  34446677777777764


Q ss_pred             CCchhHHHHHhcCC----hHHH----HHHhcc-c-hhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChh
Q 014945          187 DSPKCRDLVLSNGA----LMPL----LAQFNE-H-AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDE  256 (415)
Q Consensus       187 ~~~~~~~~~~~~g~----i~~L----~~~l~~-~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~  256 (415)
                      .....+.-+....-    ...+    +.-|.+ + .+..+.+.  .++..+...............+|.++.+|+.+..-
T Consensus       436 k~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka--~aIKy~~~FR~ql~~~~lm~~~p~li~~L~a~s~v  513 (960)
T KOG1992|consen  436 KGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKA--DAIKYIYTFRNQLGKEHLMALLPRLIRFLEAESRV  513 (960)
T ss_pred             hcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhh--cccceeeeecccCChHHHHHHHHHHHHhccCcchH
Confidence            43221111111111    1111    111211 1 11111111  12222222223344455678899999999999999


Q ss_pred             HHHHHHHHHHHhccCChH-HHHHHHHcCcHH-------HHHHhcCCC----ChhhHHHHHHHHHHhhcCChHHHHHHHH-
Q 014945          257 VLTDACWALSYLSDGTND-KIQAVIEAGVCP-------RLVELLRHP----SPSVLIPALRTVGNIVTGDDMQTQCIIN-  323 (415)
Q Consensus       257 v~~~a~~~l~~l~~~~~~-~~~~~~~~~~i~-------~L~~lL~~~----~~~v~~~a~~~l~nl~~~~~~~~~~~~~-  323 (415)
                      +-.+|+.++-.+..-.+. ....+-...+.+       -|...++.+    ++-+.....+.++-.    ++.+..... 
T Consensus       514 vhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~----~~~i~p~~~~  589 (960)
T KOG1992|consen  514 VHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISIL----QSAIIPHAPE  589 (960)
T ss_pred             HHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhC----HHhhhhhhhH
Confidence            999999988776432222 111111112222       222223322    344444455544332    222211111 


Q ss_pred             --CCChHHHHHHhcCCCccchHHHHHH----HHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhC
Q 014945          324 --HQALPCLLDLLTQNYKKSIKKEACW----TISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  397 (415)
Q Consensus       324 --~~~l~~L~~ll~~~~~~~v~~~a~~----~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~  397 (415)
                        .++-+.+....+++.+|..-....-    ++...+..++..+..+.+ .++|.+..++..+-.+.--.+...++-+..
T Consensus       590 ~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~-aL~p~fq~Il~eDI~EfiPYvfQlla~lve  668 (960)
T KOG1992|consen  590 LLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEE-ALFPVFQTILSEDIQEFIPYVFQLLAVLVE  668 (960)
T ss_pred             HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              1233344444455545544333333    333333345554444444 378888888876666677777777777765


Q ss_pred             CC
Q 014945          398 GG  399 (415)
Q Consensus       398 ~~  399 (415)
                      ..
T Consensus       669 ~~  670 (960)
T KOG1992|consen  669 HS  670 (960)
T ss_pred             hc
Confidence            43

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=86.55  E-value=2.6  Score=35.96  Aligned_cols=80  Identities=24%  Similarity=0.255  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHHhCCCchhhHHHHhCCC-------hHHHHHhhCC-CCHHHHHHHHHHHHHhcCCCch-hHHHHHhcCC
Q 014945          130 QLQFEAAWALTNIASGTSENTRVVIDHGA-------VPIFVRLLSS-PTDDVREQAVWALGNVAGDSPK-CRDLVLSNGA  200 (415)
Q Consensus       130 ~i~~~a~~~L~~l~~~~~~~~~~~~~~g~-------i~~L~~ll~~-~~~~v~~~a~~~L~nl~~~~~~-~~~~~~~~g~  200 (415)
                      .-|..|+.+|++++-. ..+.+.+...+-       +..|++++.. +++-.+|.|+-.|.+++..+.. ++....+.+.
T Consensus       139 SPqrlaLEaLcKLsV~-e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~  217 (257)
T PF12031_consen  139 SPQRLALEALCKLSVI-ENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC  217 (257)
T ss_pred             CHHHHHHHHHHHhhee-ccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence            4689999999999974 555555555543       4455555554 6788999999999999976654 4566677888


Q ss_pred             hHHHHHHhcc
Q 014945          201 LMPLLAQFNE  210 (415)
Q Consensus       201 i~~L~~~l~~  210 (415)
                      +..|+.++.+
T Consensus       218 i~~Li~FiE~  227 (257)
T PF12031_consen  218 ISHLIAFIED  227 (257)
T ss_pred             HHHHHHHHHH
Confidence            9999999943

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.34  E-value=38  Score=33.80  Aligned_cols=290  Identities=11%  Similarity=0.118  Sum_probs=139.2

Q ss_pred             cHHHHHHhhc-CCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh
Q 014945           72 SLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  150 (415)
Q Consensus        72 ~i~~l~~~l~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  150 (415)
                      .++.+.+.|. +.|+..+..|-..|+.+...  ++         .+....-++..++.+--+..|..+|..+.++... .
T Consensus         6 qLe~lCk~LY~s~D~~~R~~AE~~L~e~s~s--pe---------clskCqlll~~gs~pYs~mlAst~L~Klvs~~t~-l   73 (1082)
T KOG1410|consen    6 QLESLCKDLYESTDPTARHRAEKALAELSES--PE---------CLSKCQLLLERGSYPYSQMLASTCLMKLVSRKTP-L   73 (1082)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHccC--HH---------HHHHHHHHHHcCCCchHHHHHHHHHHHHHcCCCC-C
Confidence            4566666555 78999999999998887422  12         2333333444444466677788888887765331 1


Q ss_pred             HHHHhCCChHHHHHhhCCCCH----HHHHHHHHHHHHhcCCCc--hhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHH
Q 014945          151 RVVIDHGAVPIFVRLLSSPTD----DVREQAVWALGNVAGDSP--KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTL  224 (415)
Q Consensus       151 ~~~~~~g~i~~L~~ll~~~~~----~v~~~a~~~L~nl~~~~~--~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l  224 (415)
                      .......+-..+++++....|    -+....+..++.|..-..  ..++...-...+..+.+.+ +..+.+-...+...|
T Consensus        74 pl~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl-~~~~ve~~~igv~iL  152 (1082)
T KOG1410|consen   74 PLEQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFL-QMDNVEHCIIGVQIL  152 (1082)
T ss_pred             cHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHh-ccCchHHHHHHHHHH
Confidence            111122334456666655333    334444445555542111  1111111222455566666 444444444444555


Q ss_pred             HHhhhCC-------CCCchhhh---------hchHHHHHHhhcC------CC---hhHHHHHHHHHHHhc---------c
Q 014945          225 SNFCRGK-------PQPLFEQT---------RPALPALERLIHS------ND---DEVLTDACWALSYLS---------D  270 (415)
Q Consensus       225 ~~l~~~~-------~~~~~~~~---------~~~l~~l~~lL~~------~d---~~v~~~a~~~l~~l~---------~  270 (415)
                      ..|....       |......+         ..++..-..+|+.      +|   ..+...++..-.+..         +
T Consensus       153 sqLvqemN~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGss~D  232 (1082)
T KOG1410|consen  153 SQLVQEMNQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGSSTD  232 (1082)
T ss_pred             HHHHHHhhCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhccccccccccc
Confidence            5554332       11111100         1111111122211      11   112222222221111         1


Q ss_pred             ----------CChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcC-----ChHHHHHHHHCCChHHHHHHhc
Q 014945          271 ----------GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG-----DDMQTQCIINHQALPCLLDLLT  335 (415)
Q Consensus       271 ----------~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~-----~~~~~~~~~~~~~l~~L~~ll~  335 (415)
                                -+......+.+...++....+..+-.+.....++.+|..+++-     ++..+...+. .+++-...++.
T Consensus       233 Essed~ctVQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~aeRa~yl~-~Lv~Gvk~il~  311 (1082)
T KOG1410|consen  233 ESSEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNGAERAKYLQ-HLVEGVKRILE  311 (1082)
T ss_pred             cccccccceecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHHh
Confidence                      1112233455667788888888888888889999999988852     1112222222 23444555565


Q ss_pred             CCC---ccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHh
Q 014945          336 QNY---KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL  377 (415)
Q Consensus       336 ~~~---~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l  377 (415)
                      ++.   ++.--.+-|..|+.+-.+  -+.-.++.-...+..++++
T Consensus       312 np~~LsD~~nyHeFCRllaRlktN--YQL~ELv~v~~Y~e~irLi  354 (1082)
T KOG1410|consen  312 NPQGLSDPANYHEFCRLLARLKTN--YQLGELVKVECYPEVIRLI  354 (1082)
T ss_pred             CCcCCCCcchHHHHHHHHHHHHhh--hhhHhhhccCCcHHHHHHH
Confidence            542   455556666666665442  2334444444444444443

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=85.81  E-value=15  Score=28.84  Aligned_cols=74  Identities=14%  Similarity=0.070  Sum_probs=60.5

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC-chhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC
Q 014945          158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK  231 (415)
Q Consensus       158 ~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~  231 (415)
                      ++..|.+-|.+.++.++-.|+..|-.+..+. ..+...+...+++..|..++....++.++..++..+..-+...
T Consensus        42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f  116 (142)
T cd03569          42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF  116 (142)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence            5677788888899999999999999888764 5578888888899999999966678888888888887777554

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=85.77  E-value=11  Score=29.77  Aligned_cols=97  Identities=9%  Similarity=0.088  Sum_probs=71.3

Q ss_pred             cCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCH-HHHHHHHHcCCH
Q 014945          292 LRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV-NQIQAIIEAGII  370 (415)
Q Consensus       292 L~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~l~~~~~i  370 (415)
                      +..+++......|..+..=..    ...     .++..|.+-+.++ ++.+...|...|-.++.++. .....+.+.+++
T Consensus        13 l~~~dw~~il~icD~I~~~~~----~~k-----~a~ral~KRl~~~-n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl   82 (144)
T cd03568          13 LTSENWGLILDVCDKVKSDEN----GAK-----DCLKAIMKRLNHK-DPNVQLRALTLLDACAENCGKRFHQEVASRDFT   82 (144)
T ss_pred             CCCcCHHHHHHHHHHHhcCCc----cHH-----HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHH
Confidence            345677777777766654211    111     3466788888888 99999999999988887544 444566678899


Q ss_pred             HHHHHHhcc-CCHHHHHHHHHHHHHHhCC
Q 014945          371 GPLVNLLLN-AEFEIKKEAAWAISNATSG  398 (415)
Q Consensus       371 ~~L~~~l~~-~~~~v~~~a~~aL~nl~~~  398 (415)
                      ..|.+++.. .++.|+..++..+...+..
T Consensus        83 ~eL~kl~~~~~~~~Vk~kil~li~~W~~~  111 (144)
T cd03568          83 QELKKLINDRVHPTVKEKLREVVKQWADE  111 (144)
T ss_pred             HHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence            999999988 7899999999988888643

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=85.75  E-value=3.5  Score=32.26  Aligned_cols=73  Identities=12%  Similarity=0.040  Sum_probs=57.1

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcC------CCChHHHHHHHHHHHHHhC
Q 014945           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR------DDFPQLQFEAAWALTNIAS  144 (415)
Q Consensus        71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~------~~~~~i~~~a~~~L~~l~~  144 (415)
                      .++..+.+.|++.++.++..|+..|-.+...-....-.++...+++..|++++..      .+ +.++..++..+...+.
T Consensus        38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~-~~Vk~kil~li~~W~~  116 (139)
T cd03567          38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTS-EKVKTKIIELLYSWTL  116 (139)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCC-HHHHHHHHHHHHHHHH
Confidence            4677888899999999999999999888765434444567788899999999963      33 7888888888866654

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=85.63  E-value=4.8  Score=31.29  Aligned_cols=74  Identities=15%  Similarity=0.095  Sum_probs=56.7

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCC--CChHHHHHHHHHHHHHhC
Q 014945           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD--DFPQLQFEAAWALTNIAS  144 (415)
Q Consensus        71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~i~~~a~~~L~~l~~  144 (415)
                      +++..|.+.|+++++.++..|+..|-.+......+....+....++..|++++...  .++.++..++..+...+.
T Consensus        37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~  112 (133)
T cd03561          37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE  112 (133)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence            46788888999999999999999999987654233334455657888899999863  237899999888877665

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=85.35  E-value=15  Score=28.43  Aligned_cols=74  Identities=12%  Similarity=0.016  Sum_probs=59.7

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCch-hHHHHHhcCChHHHHHHhcc--chhHhHHHHHHHHHHHhhhCC
Q 014945          158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK-CRDLVLSNGALMPLLAQFNE--HAKLSMLRNATWTLSNFCRGK  231 (415)
Q Consensus       158 ~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~-~~~~~~~~g~i~~L~~~l~~--~~~~~~~~~a~~~l~~l~~~~  231 (415)
                      ++..|-.-|.++++.++..|+..|-.+..++.. ++..+....++..|+.++..  ..+..++..++..+.......
T Consensus        38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f  114 (133)
T cd03561          38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF  114 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            466778888889999999999999999877644 77777777888889999854  457889998888888777654

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.94  E-value=13  Score=38.78  Aligned_cols=292  Identities=18%  Similarity=0.161  Sum_probs=155.8

Q ss_pred             hccHHHHHH-hhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCC---
Q 014945           70 LESLPAMVA-GVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASG---  145 (415)
Q Consensus        70 ~~~i~~l~~-~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~---  145 (415)
                      ++++..|-. .|++.+.+.+...+..+.++.+.. .++....-+.--+|.|+.-+..-. ..+|...+.+|..-...   
T Consensus       465 LeAvqmLqdiFLkaenkdlqaeVlnrmfkIftsh-peNYricqelytvpllvlnmegfP-sslqvkiLkilEyAVtvvnc  542 (2799)
T KOG1788|consen  465 LEAVQMLQDIFLKAENKDLQAEVLNRMFKIFTSH-PENYRICQELYTVPLLVLNMEGFP-SSLQVKILKILEYAVTVVNC  542 (2799)
T ss_pred             hHHHHHHHHHHHHhcCcchhhHHHHHHHHHhccC-hHHhhHHhhccccchhhhhhcCCC-hHHHHHHHHHHHHHHhhhcc
Confidence            344444433 455778888888888888887643 444444445667888888777655 56776666655432221   


Q ss_pred             CchhhHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHH
Q 014945          146 TSENTRVVIDHGAVPIFVRLLSSP-TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTL  224 (415)
Q Consensus       146 ~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l  224 (415)
                      -|+  +.      +-.|+-+|+.+ ...+....+.....+...+..+++.+.+-|.++.|...+.++.-. .--.-....
T Consensus       543 vPe--qE------LlSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll-~gpdqysgv  613 (2799)
T KOG1788|consen  543 VPE--QE------LLSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLL-RGPDQYSGV  613 (2799)
T ss_pred             CcH--HH------HHHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhc-cCcchhhhH
Confidence            011  11      22355666654 344555566666667777777889999999999988877432100 000000111


Q ss_pred             HHhhhCCCCC-chhhh---hchHHHHHHhhcCC---Ch--hHH---HHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhc
Q 014945          225 SNFCRGKPQP-LFEQT---RPALPALERLIHSN---DD--EVL---TDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL  292 (415)
Q Consensus       225 ~~l~~~~~~~-~~~~~---~~~l~~l~~lL~~~---d~--~v~---~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL  292 (415)
                      +.....++.. .+...   ...+-.--.++.+.   ++  ++.   ...-.++..+..++.++...+.+..++..++.++
T Consensus       614 sehydrnpss~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpfl  693 (2799)
T KOG1788|consen  614 SEHYDRNPSSPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFL  693 (2799)
T ss_pred             HHHhhcCCCCchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEee
Confidence            1222222111 11100   00000001111221   11  000   0112245555566666656677777778888888


Q ss_pred             CCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCC-------C----ccchHHHHHHHHHHHhcCCHHHH
Q 014945          293 RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-------Y----KKSIKKEACWTISNITAGNVNQI  361 (415)
Q Consensus       293 ~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~-------~----~~~v~~~a~~~l~nl~~~~~~~~  361 (415)
                      -  ++..+...++++..+....+.+..    +.-+-.++..|+++       +    .....+....++..+..-+....
T Consensus       694 i--ndehRSslLrivscLitvdpkqvh----hqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaq  767 (2799)
T KOG1788|consen  694 I--NDEHRSSLLRIVSCLITVDPKQVH----HQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQ  767 (2799)
T ss_pred             e--chHHHHHHHHHHHHHhccCccccc----HHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchhe
Confidence            3  445688888888888876654321    12234455566552       0    12344555666667765444445


Q ss_pred             HHHHHcCCHHHHHHHhc
Q 014945          362 QAIIEAGIIGPLVNLLL  378 (415)
Q Consensus       362 ~~l~~~~~i~~L~~~l~  378 (415)
                      ..+-+++++..|...|.
T Consensus       768 rvFgeatGFslLlttLh  784 (2799)
T KOG1788|consen  768 RVFGEATGFSLLLTTLH  784 (2799)
T ss_pred             eehhccccHHHHHHHHH
Confidence            56667777777766653

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]

Probab=84.85  E-value=34  Score=31.90  Aligned_cols=156  Identities=9%  Similarity=0.052  Sum_probs=87.3

Q ss_pred             HHHHHhhcCCC-HHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhc--C-C------CChHHHHHHHHHHHHHh
Q 014945           74 PAMVAGVWSDD-RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS--R-D------DFPQLQFEAAWALTNIA  143 (415)
Q Consensus        74 ~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~--~-~------~~~~i~~~a~~~L~~l~  143 (415)
                      ..++..|..+. +..+...+..++-+ +.+ ....+-+.....+..|+.+-.  + .      .+..+..+++.||+|+.
T Consensus        48 e~i~~Vle~~~p~t~~v~~LetvrIL-SRd-k~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlv  125 (532)
T KOG4464|consen   48 ERIFEVLENGEPLTHRVVCLETVRIL-SRD-KDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLV  125 (532)
T ss_pred             HHHHHHHhcCCCchhhhhHHHHHHHH-hcc-ccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHH
Confidence            45666666655 34455566666655 332 122222222223444444432  1 1      12578999999999999


Q ss_pred             CCCchhhHHHHhCCChHHHHHhhCCC-----CHHHHHHHHHHHHHhcCCCchhH-HHHHhcCChHHHHHHhcc-----c-
Q 014945          144 SGTSENTRVVIDHGAVPIFVRLLSSP-----TDDVREQAVWALGNVAGDSPKCR-DLVLSNGALMPLLAQFNE-----H-  211 (415)
Q Consensus       144 ~~~~~~~~~~~~~g~i~~L~~ll~~~-----~~~v~~~a~~~L~nl~~~~~~~~-~~~~~~g~i~~L~~~l~~-----~-  211 (415)
                      ..++..+..+.++.....+++.+...     ...+...-+..|.-+..-.+..| ..+.+.++++.+.+.+..     + 
T Consensus       126 f~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse  205 (532)
T KOG4464|consen  126 FHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSE  205 (532)
T ss_pred             hccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCC
Confidence            99999999999888777777765321     01122222223333332222333 456677888888888842     1 


Q ss_pred             --------hhHhHHHHHHHHHHHhhhCC
Q 014945          212 --------AKLSMLRNATWTLSNFCRGK  231 (415)
Q Consensus       212 --------~~~~~~~~a~~~l~~l~~~~  231 (415)
                              .+......++.++.|+....
T Consensus       206 ~n~~~l~pqe~n~a~EaLK~~FNvt~~~  233 (532)
T KOG4464|consen  206 INVPPLNPQETNRACEALKVFFNVTCDS  233 (532)
T ss_pred             cCCCCCCHHHHHHHHHHHHHHhheeecc
Confidence                    12234455666677777665

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=84.28  E-value=22  Score=29.26  Aligned_cols=82  Identities=20%  Similarity=0.233  Sum_probs=60.0

Q ss_pred             hhchHHHHHHhhcCCChhHHHHHHHHHHHhccC-ChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHH
Q 014945          239 TRPALPALERLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ  317 (415)
Q Consensus       239 ~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~  317 (415)
                      ....+|.+++-|...+...+--|...+..+... ..+.+-.++ ..++..|...|.+.++.+...++.+|..++...+..
T Consensus        36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v  114 (183)
T PF10274_consen   36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV  114 (183)
T ss_pred             hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence            467889999999887777677777777777655 444443333 356777888889999999999999999997766543


Q ss_pred             HHHH
Q 014945          318 TQCI  321 (415)
Q Consensus       318 ~~~~  321 (415)
                      -..+
T Consensus       115 G~aL  118 (183)
T PF10274_consen  115 GEAL  118 (183)
T ss_pred             hHHH
Confidence            3333

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=84.27  E-value=2.4  Score=37.57  Aligned_cols=133  Identities=17%  Similarity=0.133  Sum_probs=76.5

Q ss_pred             hhHhHHHHHHHHHHHhhhCCCCCchhhh--h-chHHHHHHhhcCC---ChhHHHHHHHHHHHhccCChHHH-HHHHHcCc
Q 014945          212 AKLSMLRNATWTLSNFCRGKPQPLFEQT--R-PALPALERLIHSN---DDEVLTDACWALSYLSDGTNDKI-QAVIEAGV  284 (415)
Q Consensus       212 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~--~-~~l~~l~~lL~~~---d~~v~~~a~~~l~~l~~~~~~~~-~~~~~~~~  284 (415)
                      .....+.-++.+++|+............  . .++..+.....+.   +..++..++..+.|++....... ..-....+
T Consensus       122 ~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~l  201 (268)
T PF08324_consen  122 SPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSEL  201 (268)
T ss_dssp             SSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHH
T ss_pred             CcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence            4667788899999999987544433222  2 2333444433433   78899999999999863211100 00001124


Q ss_pred             HHHHHHhcC-C-CChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHH
Q 014945          285 CPRLVELLR-H-PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK  344 (415)
Q Consensus       285 i~~L~~lL~-~-~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~  344 (415)
                      +..+.+.+. . .+++....++-++|+++...+.........|+-..+...-....+++++.
T Consensus       202 l~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~  263 (268)
T PF08324_consen  202 LSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKE  263 (268)
T ss_dssp             HHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHH
T ss_pred             HHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHH
Confidence            556666432 2 57889999999999999776654443333345544444443332444444

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=84.02  E-value=11  Score=33.72  Aligned_cols=117  Identities=10%  Similarity=0.124  Sum_probs=74.9

Q ss_pred             cHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHH-HHHHHCCChHHHHHHh----c-------CCCccchHHHHHHHHH
Q 014945          284 VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT-QCIINHQALPCLLDLL----T-------QNYKKSIKKEACWTIS  351 (415)
Q Consensus       284 ~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~-~~~~~~~~l~~L~~ll----~-------~~~~~~v~~~a~~~l~  351 (415)
                      ++|.++.++.+.++.++..++.++..+....+... ..+...|..+.+.+.+    .       ..++..+-..+.-++.
T Consensus       120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~  199 (282)
T PF10521_consen  120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL  199 (282)
T ss_pred             HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence            68999999999999999999999999998655333 2255667665544433    2       0114556677777777


Q ss_pred             HHhc--------CCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCC
Q 014945          352 NITA--------GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS  400 (415)
Q Consensus       352 nl~~--------~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~  400 (415)
                      .++.        ........++..|++..+...-....++++...+..+..+...-.
T Consensus       200 ~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lG  256 (282)
T PF10521_consen  200 SLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELG  256 (282)
T ss_pred             HHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhc
Confidence            7732        123334444555555554444333457888777777777765433

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=83.80  E-value=18  Score=28.03  Aligned_cols=74  Identities=16%  Similarity=0.111  Sum_probs=57.2

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhcCC-CchhHHHHHhcCChHHHHHHhccchhHh-HHHHHHHHHHHhhhCC
Q 014945          158 AVPIFVRLLSSPTDDVREQAVWALGNVAGD-SPKCRDLVLSNGALMPLLAQFNEHAKLS-MLRNATWTLSNFCRGK  231 (415)
Q Consensus       158 ~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~~l~~~~~~~-~~~~a~~~l~~l~~~~  231 (415)
                      ++..|.+-|.++++.++..|+..|-.+..+ ++.++..+...+++..|..++....+.. ++..++..+..-....
T Consensus        38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f  113 (133)
T smart00288       38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF  113 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence            466677788889999999999999999876 4557788888889999999886554444 8888877777666543

Unpublished observations. Domain of unknown function.

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=82.89  E-value=54  Score=32.77  Aligned_cols=135  Identities=16%  Similarity=0.114  Sum_probs=81.4

Q ss_pred             ChHHHHHHhccc---hhHhHHHHHHHHHHHhhhCC----CCCchhhhhchHHHHHHhhc----CCChhHHHHHHHHHHHh
Q 014945          200 ALMPLLAQFNEH---AKLSMLRNATWTLSNFCRGK----PQPLFEQTRPALPALERLIH----SNDDEVLTDACWALSYL  268 (415)
Q Consensus       200 ~i~~L~~~l~~~---~~~~~~~~a~~~l~~l~~~~----~~~~~~~~~~~l~~l~~lL~----~~d~~v~~~a~~~l~~l  268 (415)
                      .+..+..++...   .+..+...++.+++.+....    +.........+++.+...|.    ..|.+.+...+.+|+|+
T Consensus       394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~  473 (574)
T smart00638      394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA  473 (574)
T ss_pred             HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence            345566666322   24556677777777666432    21112233556666665553    35666677889999998


Q ss_pred             ccCChHHHHHHHHcCcHHHHHHhcC---CCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcC-CCccchHH
Q 014945          269 SDGTNDKIQAVIEAGVCPRLVELLR---HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ-NYKKSIKK  344 (415)
Q Consensus       269 ~~~~~~~~~~~~~~~~i~~L~~lL~---~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~v~~  344 (415)
                      ....           .+..+..++.   ..+..+|..|+++|..++...+...        -+.++.++.+ .+++++|.
T Consensus       474 g~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v--------~~~l~~i~~n~~e~~EvRi  534 (574)
T smart00638      474 GHPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV--------QEVLLPIYLNRAEPPEVRM  534 (574)
T ss_pred             CChh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH--------HHHHHHHHcCCCCChHHHH
Confidence            6422           1233444443   2346799999999999986555433        3456666644 34678888


Q ss_pred             HHHHHHHHH
Q 014945          345 EACWTISNI  353 (415)
Q Consensus       345 ~a~~~l~nl  353 (415)
                      .|+.+|...
T Consensus       535 aA~~~lm~t  543 (574)
T smart00638      535 AAVLVLMET  543 (574)
T ss_pred             HHHHHHHhc
Confidence            888777543

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=82.37  E-value=57  Score=38.17  Aligned_cols=230  Identities=13%  Similarity=0.097  Sum_probs=120.7

Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhcCCCchhHH---HHH--hcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCch
Q 014945          162 FVRLLSSPTDDVREQAVWALGNVAGDSPKCRD---LVL--SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF  236 (415)
Q Consensus       162 L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~---~~~--~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~  236 (415)
                      +..++...+++++..+..++..+....+.+++   ...  ....+..+..+-..++++.++......+.   .  .....
T Consensus       486 ~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~---~--~~~~~  560 (2341)
T KOG0891|consen  486 VDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN---E--RFDAQ  560 (2341)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc---c--chhhh
Confidence            33455667888888886666655433322100   001  11233444444334445554433333222   0  11111


Q ss_pred             hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChH
Q 014945          237 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM  316 (415)
Q Consensus       237 ~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~  316 (415)
                      ..-...+..+...+++..-.++..+...+++++..++...-..+..-.+..+-.+..+....+...+..-+..+..+.+.
T Consensus       561 laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~  640 (2341)
T KOG0891|consen  561 LAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPV  640 (2341)
T ss_pred             hcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHH
Confidence            11123344455555666677888888888888887763322222222222222222222222222233333333333333


Q ss_pred             HHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHHHHHHHHH
Q 014945          317 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNA  395 (415)
Q Consensus       317 ~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~-~~~~v~~~a~~aL~nl  395 (415)
                      .....++ ..+..++..+.++ ++.+-+.+..+++.+|.-+.+......+ ..++.+.+.+.+ +...-+..+.+++.++
T Consensus       641 ~i~~~v~-~~l~~~~~~~~~~-~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l  717 (2341)
T KOG0891|consen  641 LISPYVG-PILLVLLPKLQDP-SSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQL  717 (2341)
T ss_pred             HHHhhcC-chHHHHHHHHhcc-chhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhh
Confidence            3332222 4557777888888 8889999999999999833333333334 456666666654 5677788999999999


Q ss_pred             hCCC
Q 014945          396 TSGG  399 (415)
Q Consensus       396 ~~~~  399 (415)
                      ....
T Consensus       718 ~s~~  721 (2341)
T KOG0891|consen  718 ESST  721 (2341)
T ss_pred             hccc
Confidence            8653

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=81.49  E-value=21  Score=27.99  Aligned_cols=74  Identities=15%  Similarity=0.112  Sum_probs=56.1

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC-chhHHHHHhcCChHHHHHHhccchhHh---HHHHHHHHHHHhhhCC
Q 014945          158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLS---MLRNATWTLSNFCRGK  231 (415)
Q Consensus       158 ~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~L~~~l~~~~~~~---~~~~a~~~l~~l~~~~  231 (415)
                      ++..|.+-|.+.++.++..|+..|-.+..++ +.++..+....++..|..++.......   ++..++..+.......
T Consensus        43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f  120 (140)
T PF00790_consen   43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF  120 (140)
T ss_dssp             HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence            4667788888899999999999999988765 567777777778888888885444333   7888877776666543

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []

Probab=81.36  E-value=42  Score=30.46  Aligned_cols=154  Identities=12%  Similarity=0.062  Sum_probs=80.3

Q ss_pred             hHHHHHHHHHHHHHhCCCchhhHHHHhCC-----------ChHHHHHhhC------CCCHHHHHHHHHHHHHhcCCCchh
Q 014945          129 PQLQFEAAWALTNIASGTSENTRVVIDHG-----------AVPIFVRLLS------SPTDDVREQAVWALGNVAGDSPKC  191 (415)
Q Consensus       129 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~g-----------~i~~L~~ll~------~~~~~v~~~a~~~L~nl~~~~~~~  191 (415)
                      -++|..|+.|+.....++++.+..+++.-           ....++..|-      +.|+.-.--|+.+|.++..+++..
T Consensus        52 f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~~  131 (312)
T PF04869_consen   52 FDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPEA  131 (312)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHHH
Confidence            68999999999999999888887776531           0111222222      112222223444444444444433


Q ss_pred             HHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhc-----CCChhHHHHHHHHHH
Q 014945          192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-----SNDDEVLTDACWALS  266 (415)
Q Consensus       192 ~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~-----~~d~~v~~~a~~~l~  266 (415)
                      ++....                         + ........    ......++.+..+|.     +.|+.++..-+..|.
T Consensus       132 Ke~al~-------------------------V-~~~~~~~g----e~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~  181 (312)
T PF04869_consen  132 KEQALR-------------------------V-TEGDESSG----EEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLI  181 (312)
T ss_dssp             HHHHTT----------------------------EE--STT----S--EEHHHHHHHHTTT----T--HHHHHHHHHHHH
T ss_pred             HHHHHc-------------------------c-cCCCCCCC----CCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHH
Confidence            333221                         1 00111111    111223444444432     446777777777777


Q ss_pred             HhccCChHHHHHHHHc-CcHHHHHHhcC---CCChhhHHHHHHHHHHhhc
Q 014945          267 YLSDGTNDKIQAVIEA-GVCPRLVELLR---HPSPSVLIPALRTVGNIVT  312 (415)
Q Consensus       267 ~l~~~~~~~~~~~~~~-~~i~~L~~lL~---~~~~~v~~~a~~~l~nl~~  312 (415)
                      ....+++.....+++. ..++.|++...   +.+..++--++..||-...
T Consensus       182 ~WL~e~p~AV~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicye  231 (312)
T PF04869_consen  182 VWLFECPDAVNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYE  231 (312)
T ss_dssp             HHHTT-HHHHHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHH
Confidence            7777777777778777 47888988753   2345566666667776654

p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.

>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4

Probab=80.91  E-value=11  Score=29.54  Aligned_cols=100  Identities=16%  Similarity=0.154  Sum_probs=55.9

Q ss_pred             hHHHHHHhhcCCChhHHHHHHHHHHHhc-cCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHH
Q 014945          242 ALPALERLIHSNDDEVLTDACWALSYLS-DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQC  320 (415)
Q Consensus       242 ~l~~l~~lL~~~d~~v~~~a~~~l~~l~-~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~  320 (415)
                      -...++.+|+.+...-....+..|.+=. .+-++  ..-++.+++..++.-=.....--...|+..||.+..|..     
T Consensus        23 Qt~~lielLk~~~~~~~~~lldLL~~RV~PGVD~--AA~VKA~FL~~ia~g~~~~~~Is~~~Av~LLGtM~GGYN-----   95 (154)
T PF11791_consen   23 QTAELIELLKNPPAGEEAFLLDLLTNRVPPGVDE--AAYVKAEFLAAIAKGEISSPLISPAEAVELLGTMLGGYN-----   95 (154)
T ss_dssp             HHHHHHHHHHS--TT-HHHHHHHHHHSS--TT-H--HHHHHHHHHHHHHTTSS-BTTB-HHHHHHHHTTS-SSTT-----
T ss_pred             HHHHHHHHHhCCCCccHHHHHHHHHhcCCCCCCh--HHHHHHHHHHHHHcCCccCCCcCHHHHHHHHhhccCCCc-----
Confidence            3445667776655443344445555433 22222  224455555555554333333446678899998887754     


Q ss_pred             HHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc
Q 014945          321 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITA  355 (415)
Q Consensus       321 ~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~  355 (415)
                            +..|+.+|.+. +..+...|+.+|.+-.-
T Consensus        96 ------V~~LI~~L~~~-d~~lA~~Aa~aLk~TlL  123 (154)
T PF11791_consen   96 ------VQPLIDLLKSD-DEELAEEAAEALKNTLL  123 (154)
T ss_dssp             ------HHHHHHGG--G--TTTHHHHHHHHHT--T
T ss_pred             ------HHHHHHHHcCC-cHHHHHHHHHHHHhhHH
Confidence                  67899999888 99999999999997664

2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.

>KOG2149 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.47  E-value=29  Score=32.13  Aligned_cols=120  Identities=12%  Similarity=0.140  Sum_probs=88.9

Q ss_pred             HHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc-CCHHHHHH
Q 014945          285 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQA  363 (415)
Q Consensus       285 i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~  363 (415)
                      +.-|+.-+++.+..++..|+..+-.+....+.... .--..+++.+..++.+. +..+|.....++-.+.. ..++....
T Consensus        60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~-~~~~~ll~~~~~~i~D~-~~~vR~~~~qll~~~i~~~~~e~~sp  137 (393)
T KOG2149|consen   60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQ-SHLYALLQKLRELILDD-DSLVRDALYQLLDSLILPACKEDQSP  137 (393)
T ss_pred             HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHH-HHHHHHHHHhhhhhcCc-cccHHHHHHHHHHHHHhhcchhhhcc
Confidence            56678888999999999999999888876443332 11225677788888888 89999999998888665 34444333


Q ss_pred             HHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014945          364 IIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYK  407 (415)
Q Consensus       364 l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l  407 (415)
                      ++.- +++.+...|.+-.+++|.-++..|.-++...++....+.
T Consensus       138 ~~~l-~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~  180 (393)
T KOG2149|consen  138 MVSL-LMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYA  180 (393)
T ss_pred             hHHH-HHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHH
Confidence            3332 567777788888999999999999999988776665443

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]

Probab=80.34  E-value=18  Score=38.57  Aligned_cols=237  Identities=19%  Similarity=0.220  Sum_probs=124.5

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHH--------HHhhcCCCChHHHHHHHHHHHHH
Q 014945           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF--------IEFLSRDDFPQLQFEAAWALTNI  142 (415)
Q Consensus        71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L--------~~ll~~~~~~~i~~~a~~~L~~l  142 (415)
                      +.+..|++.+-+.....|.-++.+++.++...........++.-++..+        -++..+.-...++..++|+|+.+
T Consensus        77 s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~  156 (1549)
T KOG0392|consen   77 SFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAY  156 (1549)
T ss_pred             HHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHH
Confidence            4567888888899999999999999998765422222222222222211        12222111246888899999887


Q ss_pred             hCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHh--cCChHHHHHHhccchhHhHHHHH
Q 014945          143 ASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS--NGALMPLLAQFNEHAKLSMLRNA  220 (415)
Q Consensus       143 ~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~--~g~i~~L~~~l~~~~~~~~~~~a  220 (415)
                      ..+-.+..  +.  ..++.+.+++..++-+++.-.+..+.....   ..++.+..  ..+++..+.-| .+.+.+++..|
T Consensus       157 l~~~~~s~--~~--~~~~il~q~~~q~~w~ir~Ggll~iky~~a---ir~d~l~~~~~~vl~~~i~~L-~ds~ddv~~~a  228 (1549)
T KOG0392|consen  157 LKHMDESL--IK--ETLDILLQMLRQPNWEIRHGGLLGIKYNVA---IRQDLLFQLLNLVLDFVIEGL-EDSDDDVRSVA  228 (1549)
T ss_pred             HHhhhhHh--hH--HHHHHHHHHHcCcchhheechHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhh-hhcchHHHHHH
Confidence            76422221  11  246677777776655555444444332211   11122211  01233333444 55667777777


Q ss_pred             HHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCCh-hH-HHHHHHHHHHhccCChHH---HHHHHHcCcHHHHHHhcCCC
Q 014945          221 TWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDD-EV-LTDACWALSYLSDGTNDK---IQAVIEAGVCPRLVELLRHP  295 (415)
Q Consensus       221 ~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~-~v-~~~a~~~l~~l~~~~~~~---~~~~~~~~~i~~L~~lL~~~  295 (415)
                      ..++.-.....+......+..++..+...+..-|. .- .......+..++...+..   .+.-...|+++.+..++.+.
T Consensus       229 a~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~  308 (1549)
T KOG0392|consen  229 AQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHT  308 (1549)
T ss_pred             HHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHH
Confidence            77776665543222222233334444333322211 00 011112223333332110   11122348999999999988


Q ss_pred             ChhhHHHHHHHHHHhhcCCh
Q 014945          296 SPSVLIPALRTVGNIVTGDD  315 (415)
Q Consensus       296 ~~~v~~~a~~~l~nl~~~~~  315 (415)
                      -..++..++..+..+....+
T Consensus       309 i~sv~~a~l~~l~~lle~~~  328 (1549)
T KOG0392|consen  309 ISSVRRAALETLAMLLEADD  328 (1549)
T ss_pred             HHHHHHHHHHHHHHHHhcCC
Confidence            78888899999888876543

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=80.18  E-value=24  Score=26.89  Aligned_cols=99  Identities=15%  Similarity=0.110  Sum_probs=64.3

Q ss_pred             CCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc-CCHHHHHHHHH-cCCH
Q 014945          293 RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIE-AGII  370 (415)
Q Consensus       293 ~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~-~~~i  370 (415)
                      +++++..--..+.-|++++..+.....     .+.+.|.+-|++. ++.|+..+..+|-.+|. |++.....+.. ..+|
T Consensus        11 sdd~~p~pgy~~~Eia~~t~~s~~~~~-----ei~d~L~kRL~~~-~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~I   84 (122)
T cd03572          11 SDDDEPTPGYLYEEIAKLTRKSVGSCQ-----ELLEYLLKRLKRS-SPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQI   84 (122)
T ss_pred             cCCCCCCchHHHHHHHHHHHcCHHHHH-----HHHHHHHHHhcCC-CCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHH
Confidence            333333444555566677766554444     3456899999988 89999999999999998 66666666654 3345


Q ss_pred             HHHHHHhccCC--------HHHHHHHHHHHHHHhC
Q 014945          371 GPLVNLLLNAE--------FEIKKEAAWAISNATS  397 (415)
Q Consensus       371 ~~L~~~l~~~~--------~~v~~~a~~aL~nl~~  397 (415)
                      ..+.++-...|        ..||..|-.++.-+..
T Consensus        85 k~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~  119 (122)
T cd03572          85 RECANYKGPPDPLKGDSLNEKVREEAQELIKAIFS  119 (122)
T ss_pred             HHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhc
Confidence            55544433122        2588888877776654

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]

Probab=80.14  E-value=51  Score=30.79  Aligned_cols=153  Identities=16%  Similarity=0.082  Sum_probs=88.1

Q ss_pred             HHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhh----------cCCChhHHHHHHHHHHHhccCC
Q 014945          203 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI----------HSNDDEVLTDACWALSYLSDGT  272 (415)
Q Consensus       203 ~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL----------~~~d~~v~~~a~~~l~~l~~~~  272 (415)
                      .++..|.+......+..++.++.-|++.............+..|+.+-          ...|.++...++.+|+|+.-++
T Consensus        49 ~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~S  128 (532)
T KOG4464|consen   49 RIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFHS  128 (532)
T ss_pred             HHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhcc
Confidence            445555333334455566666666666654333333334444443332          1235688999999999999888


Q ss_pred             hHHHHHHHHcCcHHHHHHhcCCC-----ChhhHHHHHHHHHHhhc-CChHHHHHHHHCCChHHHHHHhcCCC--------
Q 014945          273 NDKIQAVIEAGVCPRLVELLRHP-----SPSVLIPALRTVGNIVT-GDDMQTQCIINHQALPCLLDLLTQNY--------  338 (415)
Q Consensus       273 ~~~~~~~~~~~~i~~L~~lL~~~-----~~~v~~~a~~~l~nl~~-~~~~~~~~~~~~~~l~~L~~ll~~~~--------  338 (415)
                      +...+.+.+......+.+.+...     ...+...=++.|--+.. ..+...+.+.+.++++.+-+.+.++.        
T Consensus       129 q~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n~  208 (532)
T KOG4464|consen  129 QRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEINV  208 (532)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcCC
Confidence            87777777777777766665311     11122222222222221 12445566667799999999886541        


Q ss_pred             ------ccchHHHHHHHHHHHhc
Q 014945          339 ------KKSIKKEACWTISNITA  355 (415)
Q Consensus       339 ------~~~v~~~a~~~l~nl~~  355 (415)
                            +.....++..++.|++.
T Consensus       209 ~~l~pqe~n~a~EaLK~~FNvt~  231 (532)
T KOG4464|consen  209 PPLNPQETNRACEALKVFFNVTC  231 (532)
T ss_pred             CCCCHHHHHHHHHHHHHHhheee
Confidence                  11344677777888876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	415
4b8j_A	528	Rimp_alpha1a Length = 528		0.0
4b8j_A	528	Rimp_alpha1a Length = 528		5e-13
2yns_A	490	Rimp_alpha_b54nls Length = 490		1e-173
1wa5_B	530	Crystal Structure Of The Exportin Cse1p Complexed W		1e-106
3tj3_A	447	Structure Of Importin A5 Bound To The N-Terminus Of		1e-101
2jdq_A	450	C-Terminal Domain Of Influenza A Virus Polymerase P		1e-101
1bk6_A	422	Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng		2e-98
1bk5_A	422	Karyopherin Alpha From Saccharomyces Cerevisiae Len		2e-98
1ee5_A	424	Yeast Karyopherin (Importin) Alpha In A Complex Wit		1e-97
1ee4_A	423	Crystal Structure Of Yeast Karyopherin (Importin) A		1e-97
1un0_A	443	Crystal Structure Of Yeast Karyopherin (Importin) A		1e-97
2c1t_A	454	Structure Of The Kap60p:nup2 Complex Length = 454		2e-97
3tpo_A	529	Crystal Structure Of D192aE396A MUTANT OF MOUSE IMP		4e-95
3rz9_A	510	Mouse Importin Alpha-Ku80 Nls Peptide Complex Lengt		8e-91
4ba3_A	496	Mimp_alphadibb_a89nls Length = 496		9e-91
1ejl_I	460	Mouse Importin Alpha-Sv40 Large T Antigen Nls Pepti		9e-91
1q1s_C	466	Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptid		9e-91
4htv_A	509	Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex		1e-90
2ynr_A	461	Mimp_alphadibb_b54nls Length = 461		1e-90
3ukw_B	510	Mouse Importin Alpha: Bimax1 Peptide Complex Length		1e-90
1ial_A	453	Importin Alpha, Mouse Length = 453		1e-90
3l3q_A	427	Mouse Importin Alpha-Peptm Nls Peptide Complex Leng		1e-90
3btr_C	427	Ar-Nls:importin-Alpha Complex Length = 427		1e-90
1y2a_C	428	Structure Of Mammalian Importin Bound To The Non-Cl		1e-90
3ve6_A	426	Crystal Structure Analysis Of Venezuelan Equine Enc		1e-90
2c1m_A	424	Nup50:importin-Alpha Complex Length = 424		1e-90
3tpm_A	422	Crystal Structure Of Mal Rpel Domain In Complex Wit		2e-90
3fex_C	467	Crystal Structure Of The Cbc-Importin Alpha Complex		5e-89
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		4e-36
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		5e-34
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		2e-27
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		7e-26
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		3e-22
4db9_A	210	Designed Armadillo Repeat Protein (Yiiim3aiii) Leng		6e-23
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		8e-23
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		2e-21

>pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528

Iteration: 1
 Score =  709 bits (1831), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/416 (83%), Positives = 373/416 (89%), Gaps = 4/416 (0%)
Query: 1   MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLT 60
           MSLRP+ R EVRR++YKVAVDAEEGRRRREDNMVEIRK++REESLLKKRREGLQA  P+ 
Sbjct: 3   MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVP 62
Query: 61  NSAALD-NKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF 119
            SAA   +KKLESLPAM+ GV+SDD N+QL+ATTQFRKLLSIERSPPI EVIQSGVVPRF
Sbjct: 63  ASAATGVDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRF 122
Query: 120 IEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVW 179
           ++FL+R+DFPQLQFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL S +DDVREQAVW
Sbjct: 123 VQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVW 182
Query: 180 ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 239
           ALGNVAGDSPKCRDLVL+NGAL+PLLAQ NEH KLSMLRNATWTLSNFCRGKPQP FEQT
Sbjct: 183 ALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT 242
Query: 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 299
           RPALPAL RLIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSV
Sbjct: 243 RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSV 302
Query: 300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 359
           LIPALRTVGNIVTGDD QTQCII+HQALPCLL LLTQN KKSIKKEACWTISNITAGN +
Sbjct: 303 LIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKD 362
Query: 360 XXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYKFFYVSRTC 415
                       PLVNLL  AEF+IKKEAAWAISNATSGGS++QIKY    VS  C
Sbjct: 363 QIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKY---LVSEGC 415

>pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528

Iteration: 1
 Score = 72.0 bits (175), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 116/234 (49%), Gaps = 20/234 (8%)
Query: 134 EAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGN-VAGDSPKCR 192
           +A WAL+ ++ GT++  + VI+ G  P  V LL  P+  V   A+  +GN V GD  + +
Sbjct: 263 DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQ 322
Query: 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPA-LERLIH 251
             ++ + AL  LL+   ++ K S+ + A WT+SN   G    +       +   L  L+ 
Sbjct: 323 -CIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQ 381
Query: 252 SNDDEVLTDACWALS-YLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 310
           + + ++  +A WA+S   S G++D+I+ ++  G    L +LL  P   ++   L  + NI
Sbjct: 382 TAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENI 441
Query: 311 V----------TGD-DMQTQCIINHQALPCLLDLLTQN----YKKSIK-KEACW 348
           +           GD ++ +Q I   + L  + +L + +    Y+K++K  EA W
Sbjct: 442 LKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYW 495

>pdb|2YNS|A Chain A, Rimp_alpha_b54nls Length = 490

Iteration: 1
 Score =  604 bits (1557), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 291/344 (84%), Positives = 310/344 (90%), Gaps = 3/344 (0%)
Query: 72  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
           SLPAM+ GV+SDD N+QL+ATTQFRKLLSIERSPPI EVIQSGVVPRF++FL+R+DFPQL
Sbjct: 37  SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQL 96
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
           QFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL S +DDVREQAVWALGNVAGDSPKC
Sbjct: 97  QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKC 156
Query: 192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH 251
           RDLVL+NGAL+PLLAQ NEH KLSMLRNATWTLSNFCRGKPQP FEQTRPALPAL RLIH
Sbjct: 157 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIH 216
Query: 252 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311
           SND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSVLIPALRTVGNIV
Sbjct: 217 SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIV 276
Query: 312 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXX 371
           TGDD QTQCII+HQALPCLL LLTQN KKSIKKEACWTISNITAGN +            
Sbjct: 277 TGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIG 336
Query: 372 PLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYKFFYVSRTC 415
           PLVNLL  AEF+IKKEAAWAISNATSGGS++QIKY    VS  C
Sbjct: 337 PLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKY---LVSEGC 377

>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530

Iteration: 1
 Score =  381 bits (978), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/402 (52%), Positives = 266/402 (66%), Gaps = 14/402 (3%)
Query: 10  EVRRSKYKVA--VDAEEGRRRREDNMVEIRKNKREESLLKKRR-----EGLQAHQPLTNS 62
           E RR+ +K      A+E RRRR+   VE+RK KR+E+L K+R      +G  + +   +S
Sbjct: 15  EYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESS 74
Query: 63  AALDNKKL----ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPR 118
            + D +      + LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR
Sbjct: 75  VSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPR 134
Query: 119 FIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAV 178
            +EF+  +    LQ EAAWALTNIASGTS  T+VV+D  AVP+F++LL + + +V+EQA+
Sbjct: 135 LVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAI 194
Query: 179 WALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-KPQPLFE 237
           WALGNVAGDS   RD VL   A+ P+L  FN + K S++R ATWTLSN CRG KPQP + 
Sbjct: 195 WALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWS 253
Query: 238 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP 297
               ALP L +LI+S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S 
Sbjct: 254 VVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHEST 313
Query: 298 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 357
            V  PALR VGNIVTG+D+QTQ +IN   LP  L LL  + K++IKKEACWTISNITAGN
Sbjct: 314 LVQTPALRAVGNIVTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGN 372
Query: 358 VNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGG 399
                         PLV LL  AE++ KKEA WAISNA+SGG
Sbjct: 373 TEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGG 414

>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50 Length = 447

Iteration: 1
 Score =  365 bits (938), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 200/333 (60%), Positives = 234/333 (70%), Gaps = 3/333 (0%)
Query: 76  MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQS-GVVPRFIEFLSRDDFPQLQFE 134
           M+  ++S     QL AT +FRKLLS E +PPI+EVI + GVV RF+EFL R +   LQFE
Sbjct: 22  MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 81
Query: 135 AAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 194
           +AW LTNIASG S  TR+VI  GAVPIF+ LLSS  +DV+EQAVWALGN+AGDS  CRD 
Sbjct: 82  SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 141
Query: 195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSN 253
           VL    L PLL  F++  +L+M RNA W LSN CRGK P P F +  P L  L  L+  +
Sbjct: 142 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 201
Query: 254 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 313
           D +VL DACWALSYLSDG NDKIQAVI+AGVC RLVELL H    V+ PALR VGNIVTG
Sbjct: 202 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 261
Query: 314 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPL 373
           DD+QTQ I+N  AL   L  L  + K+SIKKEACWTISNITAGN               L
Sbjct: 262 DDIQTQVILNCSALQ-SLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 320
Query: 374 VNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY 406
           +++L  AEF  +KEAAWAI+NATSGGS EQIKY
Sbjct: 321 ISILQTAEFRTRKEAAWAITNATSGGSAEQIKY 353

>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2 Subunit In Complex With Human Importin Alpha5 Length = 450

Iteration: 1
 Score =  365 bits (938), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 200/333 (60%), Positives = 234/333 (70%), Gaps = 3/333 (0%)
Query: 76  MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQS-GVVPRFIEFLSRDDFPQLQFE 134
           M+  ++S     QL AT +FRKLLS E +PPI+EVI + GVV RF+EFL R +   LQFE
Sbjct: 25  MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 84
Query: 135 AAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 194
           +AW LTNIASG S  TR+VI  GAVPIF+ LLSS  +DV+EQAVWALGN+AGDS  CRD 
Sbjct: 85  SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144
Query: 195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSN 253
           VL    L PLL  F++  +L+M RNA W LSN CRGK P P F +  P L  L  L+  +
Sbjct: 145 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 204
Query: 254 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 313
           D +VL DACWALSYLSDG NDKIQAVI+AGVC RLVELL H    V+ PALR VGNIVTG
Sbjct: 205 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264
Query: 314 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPL 373
           DD+QTQ I+N  AL   L  L  + K+SIKKEACWTISNITAGN               L
Sbjct: 265 DDIQTQVILNCSALQ-SLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 323
Query: 374 VNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY 406
           +++L  AEF  +KEAAWAI+NATSGGS EQIKY
Sbjct: 324 ISILQTAEFRTRKEAAWAITNATSGGSAEQIKY 356

>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422

Iteration: 1
 Score =  355 bits (912), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 191/344 (55%), Positives = 234/344 (68%), Gaps = 4/344 (1%)
Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
           LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR +EF+  +    LQ
Sbjct: 1   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 60
Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
            EAAWALTNIASGTS  T+VV+D  AVP+F++LL + + +V+EQA+WALGNVAGDS   R
Sbjct: 61  LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 120
Query: 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-KPQPLFEQTRPALPALERLIH 251
           D VL   A+ P+L  FN + K S++R ATWTLSN CRG KPQP +     ALP L +LI+
Sbjct: 121 DYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 179
Query: 252 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311
           S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VGNIV
Sbjct: 180 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 239
Query: 312 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXX 371
           TG+D+QTQ +IN   LP  L LL  + K++IKKEACWTISNITAGN              
Sbjct: 240 TGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIP 298
Query: 372 PLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYKFFYVSRTC 415
           PLV LL  AE++ KKEA WAISNA+SGG       ++  VS+ C
Sbjct: 299 PLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYL-VSQGC 341

>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422

Iteration: 1
 Score =  355 bits (912), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 191/344 (55%), Positives = 234/344 (68%), Gaps = 4/344 (1%)
Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
           LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR +EF+  +    LQ
Sbjct: 1   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 60
Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
            EAAWALTNIASGTS  T+VV+D  AVP+F++LL + + +V+EQA+WALGNVAGDS   R
Sbjct: 61  LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 120
Query: 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-KPQPLFEQTRPALPALERLIH 251
           D VL   A+ P+L  FN + K S++R ATWTLSN CRG KPQP +     ALP L +LI+
Sbjct: 121 DYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 179
Query: 252 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311
           S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VGNIV
Sbjct: 180 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 239
Query: 312 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXX 371
           TG+D+QTQ +IN   LP  L LL  + K++IKKEACWTISNITAGN              
Sbjct: 240 TGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIP 298
Query: 372 PLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYKFFYVSRTC 415
           PLV LL  AE++ KKEA WAISNA+SGG       ++  VS+ C
Sbjct: 299 PLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYL-VSQGC 341

>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424

Iteration: 1
 Score =  353 bits (906), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 191/346 (55%), Positives = 234/346 (67%), Gaps = 4/346 (1%)
Query: 71  ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQ 130
           + LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR +EF+  +    
Sbjct: 1   QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM 60
Query: 131 LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 190
           LQ EAAWALTNIASGTS  T+VV+D  AVP+F++LL + + +V+EQA+WALGNVAGDS  
Sbjct: 61  LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 120
Query: 191 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-KPQPLFEQTRPALPALERL 249
            RD VL   A+ P+L  FN + K S++R ATWTLSN CRG KPQP +     ALP L +L
Sbjct: 121 YRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL 179
Query: 250 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 309
           I+S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VGN
Sbjct: 180 IYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 239
Query: 310 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXX 369
           IVTG+D+QTQ +IN   LP  L LL  + K++IKKEACWTISNITAGN            
Sbjct: 240 IVTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 298
Query: 370 XXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYKFFYVSRTC 415
             PLV LL  AE + KKEA WAISNA+SGG       ++  VS+ C
Sbjct: 299 IPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYL-VSQGC 343

>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423

Iteration: 1
 Score =  353 bits (906), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 191/346 (55%), Positives = 234/346 (67%), Gaps = 4/346 (1%)
Query: 71  ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQ 130
           + LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR +EF+  +    
Sbjct: 1   QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM 60
Query: 131 LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 190
           LQ EAAWALTNIASGTS  T+VV+D  AVP+F++LL + + +V+EQA+WALGNVAGDS  
Sbjct: 61  LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 120
Query: 191 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-KPQPLFEQTRPALPALERL 249
            RD VL   A+ P+L  FN + K S++R ATWTLSN CRG KPQP +     ALP L +L
Sbjct: 121 YRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL 179
Query: 250 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 309
           I+S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VGN
Sbjct: 180 IYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 239
Query: 310 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXX 369
           IVTG+D+QTQ +IN   LP  L LL  + K++IKKEACWTISNITAGN            
Sbjct: 240 IVTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 298
Query: 370 XXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYKFFYVSRTC 415
             PLV LL  AE + KKEA WAISNA+SGG       ++  VS+ C
Sbjct: 299 IPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYL-VSQGC 343

>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443

Iteration: 1
 Score =  353 bits (905), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 191/344 (55%), Positives = 233/344 (67%), Gaps = 4/344 (1%)
Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
           LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR +EF+  +    LQ
Sbjct: 2   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 61
Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
            EAAWALTNIASGTS  T+VV+D  AVP+F++LL + + +V+EQA+WALGNVAGDS   R
Sbjct: 62  LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 121
Query: 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-KPQPLFEQTRPALPALERLIH 251
           D VL   A+ P+L  FN + K S++R ATWTLSN CRG KPQP +     ALP L +LI+
Sbjct: 122 DYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 180
Query: 252 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311
           S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VGNIV
Sbjct: 181 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 240
Query: 312 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXX 371
           TG+D+QTQ +IN   LP  L LL  + K++IKKEACWTISNITAGN              
Sbjct: 241 TGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIP 299
Query: 372 PLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYKFFYVSRTC 415
           PLV LL  AE + KKEA WAISNA+SGG       ++  VS+ C
Sbjct: 300 PLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYL-VSQGC 342

>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454

Iteration: 1
 Score =  352 bits (903), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 191/344 (55%), Positives = 233/344 (67%), Gaps = 4/344 (1%)
Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
           LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR +EF+  +    LQ
Sbjct: 2   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 61
Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
            EAAWALTNIASGTS  T+VV+D  AVP+F++LL + + +V+EQA+WALGNVAGDS   R
Sbjct: 62  LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 121
Query: 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-KPQPLFEQTRPALPALERLIH 251
           D VL   A+ P+L  FN + K S++R ATWTLSN CRG KPQP +     ALP L +LI+
Sbjct: 122 DYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 180
Query: 252 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311
           S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VGNIV
Sbjct: 181 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 240
Query: 312 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXX 371
           TG+D+QTQ +IN   LP  L LL  + K++IKKEACWTISNITAGN              
Sbjct: 241 TGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIP 299
Query: 372 PLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYKFFYVSRTC 415
           PLV LL  AE + KKEA WAISNA+SGG       ++  VS+ C
Sbjct: 300 PLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYL-VSQGC 342

>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN ALPHA2 Length = 529

Iteration: 1
 Score =  345 bits (884), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 193/410 (47%), Positives = 257/410 (62%), Gaps = 12/410 (2%)
Query: 5   PNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGL---QAHQPLTN 61
           P AR    ++K K   D+ E RRRR +  VE+RK K++E +LK+R        A  PL  
Sbjct: 10  PAARLNRFKNKGK---DSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQE 66
Query: 62  SAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIE 121
           +         S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ 
Sbjct: 67  NRNNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVS 126
Query: 122 FLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWAL 181
           FL + D   +QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWAL
Sbjct: 127 FLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWAL 186
Query: 182 GNVAGDSPKCRDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLF 236
           GN+AG     RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  
Sbjct: 187 GNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPL 246
Query: 237 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS 296
           +     LP L RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL    
Sbjct: 247 DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE 306
Query: 297 PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356
             ++ PALR +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG
Sbjct: 307 LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAG 365
Query: 357 NVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY 406
             +             LV +L  A+F+ +K AAWAI+N TSGG+ EQI Y
Sbjct: 366 RQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVY 415

>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex Length = 510

Iteration: 1
 Score =  330 bits (846), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 172/340 (50%), Positives = 226/340 (66%), Gaps = 6/340 (1%)
Query: 72  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 58  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 237
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 238 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 356
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY 406
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI Y
Sbjct: 357 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY 396

>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls Length = 496

Iteration: 1
 Score =  330 bits (846), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 172/340 (50%), Positives = 226/340 (66%), Gaps = 6/340 (1%)
Query: 72  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 44  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 103
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 104 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 163
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 164 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 223
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 224 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 283
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 284 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 342
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY 406
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI Y
Sbjct: 343 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY 382

>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide Complex Length = 460

Iteration: 1
 Score =  330 bits (846), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 172/340 (50%), Positives = 226/340 (66%), Gaps = 6/340 (1%)
Query: 72  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 8   SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 67
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 68  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 127
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 128 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 187
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 188 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 247
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 248 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 306
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY 406
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI Y
Sbjct: 307 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY 346

>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide Complex Length = 466

Iteration: 1
 Score =  330 bits (846), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 172/340 (50%), Positives = 226/340 (66%), Gaps = 6/340 (1%)
Query: 72  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 14  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 73
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 74  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 133
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 134 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 193
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 194 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 253
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 254 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 312
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY 406
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI Y
Sbjct: 313 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY 352

>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex Length = 509

Iteration: 1
 Score =  330 bits (845), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 172/340 (50%), Positives = 226/340 (66%), Gaps = 6/340 (1%)
Query: 72  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 58  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 237
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 238 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 356
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY 406
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI Y
Sbjct: 357 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY 396

>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls Length = 461

Iteration: 1
 Score =  330 bits (845), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 172/340 (50%), Positives = 226/340 (66%), Gaps = 6/340 (1%)
Query: 72  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 42  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 101
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 102 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 161
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 162 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 221
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 222 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 281
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 282 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 340
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY 406
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI Y
Sbjct: 341 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY 380

>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex Length = 510

Iteration: 1
 Score =  330 bits (845), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 172/340 (50%), Positives = 226/340 (66%), Gaps = 6/340 (1%)
Query: 72  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 58  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 237
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 238 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 356
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY 406
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI Y
Sbjct: 357 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY 396

>pdb|1IAL|A Chain A, Importin Alpha, Mouse Length = 453

Iteration: 1
 Score =  330 bits (845), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 172/340 (50%), Positives = 226/340 (66%), Gaps = 6/340 (1%)
Query: 72  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 34  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 93
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 94  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 153
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 154 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 213
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 214 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 273
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 274 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 332
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY 406
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI Y
Sbjct: 333 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY 372

>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex Length = 427

Iteration: 1
 Score =  330 bits (845), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 172/340 (50%), Positives = 226/340 (66%), Gaps = 6/340 (1%)
Query: 72  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 7   SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 66
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 67  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 126
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 127 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 186
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 187 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 246
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 247 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 305
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY 406
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI Y
Sbjct: 306 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY 345

>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex Length = 427

Iteration: 1
 Score =  330 bits (845), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 172/340 (50%), Positives = 226/340 (66%), Gaps = 6/340 (1%)
Query: 72  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 8   SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 67
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 68  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 127
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 128 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 187
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 188 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 247
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 248 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 306
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY 406
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI Y
Sbjct: 307 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY 346

>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical Plscr1-Nls Length = 428

Iteration: 1
 Score =  329 bits (844), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 172/340 (50%), Positives = 226/340 (66%), Gaps = 6/340 (1%)
Query: 72  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 8   SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 67
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 68  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 127
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 128 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 187
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 188 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 247
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 248 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 306
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY 406
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI Y
Sbjct: 307 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY 346

>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine Encephalitis Virus Capsid Protein Nls And Importin Alpha Length = 426

Iteration: 1
 Score =  329 bits (844), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 172/340 (50%), Positives = 226/340 (66%), Gaps = 6/340 (1%)
Query: 72  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 7   SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 66
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 67  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 126
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 127 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 186
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 187 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 246
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 247 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 305
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY 406
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI Y
Sbjct: 306 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY 345

>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex Length = 424

Iteration: 1
 Score =  329 bits (844), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 172/340 (50%), Positives = 226/340 (66%), Gaps = 6/340 (1%)
Query: 72  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 3   SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 62
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 63  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 122
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 123 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 182
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 183 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 242
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 243 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 301
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY 406
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI Y
Sbjct: 302 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY 341

>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With Importin-Alpha Length = 422

Iteration: 1
 Score =  329 bits (844), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 172/340 (50%), Positives = 226/340 (66%), Gaps = 6/340 (1%)
Query: 72  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 3   SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 62
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 63  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 122
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 123 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 182
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 183 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 242
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 243 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 301
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY 406
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI Y
Sbjct: 302 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY 341

>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex. Length = 467

Iteration: 1
 Score =  324 bits (831), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 171/340 (50%), Positives = 224/340 (65%), Gaps = 6/340 (1%)
Query: 72  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
           S+  +V G+ S +   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL R D   +
Sbjct: 9   SVDDIVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPI 68
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 69  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVF 128
Query: 192 RDLVLSNGALMPLLAQFNEHAKLSM----LRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
           RDLV+  GA+ PLLA        S+    LRN TWTLSN CR K P P  +     LP L
Sbjct: 129 RDLVIKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTL 188
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
            RL+H +D EVL D CWA+SYL+DG N++I  V++ GV P+LV+LL      ++ PALR 
Sbjct: 189 VRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRA 248
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 249 IGNIVTGTDEQTQVVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 307
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY 406
                 LV++L  A+F+ +KEA WA++N TSGG+ EQI Y
Sbjct: 308 HGLVPFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVY 347

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score =  148 bits (374), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 91/227 (40%), Positives = 131/227 (57%), Gaps = 12/227 (5%)
Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
           LP M   + SDD   QL AT +F ++LS + +  I  VI +G +P  ++ LS  +   LQ
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
            EA WAL+NIASG +E  + VID GA+P  V+LLSSP + + ++A+WAL N+A    +  
Sbjct: 73  -EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRP-----ALPALE 247
             V+  GAL P L Q        +L+ A W LSN   G      EQ +      ALPAL 
Sbjct: 132 QAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGG----NEQIQAVIDAGALPALV 186
Query: 248 RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH 294
           +L+ S ++++L +A WALS ++ G N++ QAV EAG   +L +L  H
Sbjct: 187 QLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH 233

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score =  141 bits (356), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 89/236 (37%), Positives = 131/236 (55%), Gaps = 12/236 (5%)
Query: 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVRE 175
           +P+  + L+ DD  Q Q  A    + I S  +E  + VID GA+P  V+LLSSP + + +
Sbjct: 14  LPQMTQQLNSDDM-QEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 176 QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 235
           +A+WAL N+A    +    V+  GAL P L Q        +L+ A W LSN   G     
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGG---- 127
Query: 236 FEQTRP-----ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE 290
            EQ +      ALPAL +L+ S ++++L +A WALS ++ G N++IQAVI+AG  P LV+
Sbjct: 128 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ 187
Query: 291 LLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEA 346
           LL  P+  +L  AL  + NI +G + Q Q +    AL  L  L +   +K I+KEA
Sbjct: 188 LLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEK-IQKEA 242

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score =  120 bits (300), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/162 (41%), Positives = 99/162 (61%), Gaps = 2/162 (1%)
Query: 242 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 301
           ALPAL +L+ S ++++L +A WALS ++ G N++IQAVI+AG  P LV+LL  P+  +L 
Sbjct: 55  ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 302 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXX 361
            AL  + NI +G + Q Q +I+  ALP L+ LL+ +  + I +EA W +SNI +G     
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQI 173
Query: 362 XXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ 403
                      LV LL +   +I +EA WA+SN  SGG NEQ
Sbjct: 174 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQ 214

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score =  114 bits (286), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 75/197 (38%), Positives = 108/197 (54%), Gaps = 4/197 (2%)
Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
           LP M   + SDD   QL AT +F ++LS + +  I  VI +G +P  ++ LS  +   LQ
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
            EA WAL+NIASG +E  + VID GA+P  V+LLSSP + + ++A+WAL N+A    +  
Sbjct: 73  -EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR-GKPQPLFEQTRPALPALERLIH 251
             V+  GAL P L Q        +L+ A W LSN    G  Q    +   AL  LE+L  
Sbjct: 132 QAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS 190
Query: 252 SNDDEVLTDACWALSYL 268
             ++++  +A  AL  L
Sbjct: 191 HENEKIQKEAQEALEKL 207

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score =  102 bits (255), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 89/151 (58%), Gaps = 1/151 (0%)
Query: 242 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 301
           ALPAL +L+ S ++++L +A WALS ++ G N++IQAVI+AG  P LV+LL  P+  +L 
Sbjct: 55  ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 302 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXX 361
            AL  + NI +G + Q Q +I+  ALP L+ LL+ +  + I +EA W +SNI +G     
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQK 173
Query: 362 XXXXXXXXXXPLVNLLLNAEFEIKKEAAWAI 392
                      L  L  +   +I+KEA  A+
Sbjct: 174 QAVKEAGALEKLEQLQSHENEKIQKEAQEAL 204

>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210

Iteration: 1
 Score =  105 bits (261), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 63/161 (39%), Positives = 92/161 (57%), Gaps = 2/161 (1%)
Query: 243 LPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIP 302
           LP + + ++S D + L  A   LS ++ G N++IQAVI+AG  P LV+LL  P+  +L  
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 303 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXX 362
           AL  + NI +G + Q Q +I+  ALP L+ LL+ +  + I +EA W +SNI +G      
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQ 132
Query: 363 XXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ 403
                     LV LL +   +I +EA WA+SN  SGG NEQ
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQ 172

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score =  104 bits (260), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 63/161 (39%), Positives = 92/161 (57%), Gaps = 2/161 (1%)
Query: 243 LPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIP 302
           LP + + ++S D + L  A   LS ++ G N++IQAVI+AG  P LV+LL  P+  +L  
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 303 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXX 362
           AL  + NI +G + Q Q +I+  ALP L+ LL+ +  + I +EA W +SNI +G      
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQ 132
Query: 363 XXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ 403
                     LV LL +   +I +EA WA+SN  SGG NEQ
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQ 172

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 128/284 (45%), Gaps = 44/284 (15%)
Query: 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVRE 175
           V + ++ L+  D  + Q EAA  L  IASG +   + ++D G V + V+LL+S   +V++
Sbjct: 4   VEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQK 62
Query: 176 QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 235
           +A  AL N+A    +    ++  G +  L+                              
Sbjct: 63  EAARALANIASGPDEAIKAIVDAGGVEVLV------------------------------ 92
Query: 236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP 295
                       +L+ S D EV  +A  AL+ ++ G ++ I+A+++AG    LV+LL   
Sbjct: 93  ------------KLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST 140
Query: 296 SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355
              V   A R + NI +G D   + I++   +  L+ LLT +    ++KEA   ++NI +
Sbjct: 141 DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIAS 199
Query: 356 GNVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGG 399
           G  +             L  LL + + E++KEA  A+ N  SGG
Sbjct: 200 GPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	415
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-163
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	2e-48
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-156
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-51
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-42
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	9e-41
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	3e-21
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-152
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	8e-54
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	9e-54
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	4e-40
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-95
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-66
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-64
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-61
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-55
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	8e-55
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-34
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	4e-21
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	7e-14
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-95
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-72
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-64
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	6e-60
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-56
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	6e-53
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	8e-29
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-21
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	1e-90
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-68
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-51
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	7e-04
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	5e-74
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	4e-69
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-63
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-60
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-39
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	6e-74
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	3e-55
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	1e-49
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	3e-05
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	4e-71
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	4e-57
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-21
3nmz_A	458	APC variant protein; protein-protein complex, arma	3e-61
3nmz_A	458	APC variant protein; protein-protein complex, arma	7e-29
3nmz_A	458	APC variant protein; protein-protein complex, arma	8e-24
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	1e-55
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	8e-30
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-28
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	5e-20
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-16
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-50
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	4e-24
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	7e-21
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-16
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	2e-49
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	5e-24
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	1e-23
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	1e-20
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	3e-41
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-37
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	6e-36
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-33
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	3e-28
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	7e-17
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	1e-37
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	2e-20
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	8e-15
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	7e-04
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	4e-21
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	7e-15
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	9e-13
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	5e-07
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	2e-04
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	1e-11
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	1e-10
1qgk_B	44	Protein (importin alpha-2 subunit); transport rece	3e-11
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	2e-10
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	4e-10
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	5e-09
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	7e-06
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	4e-10
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	1e-05
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	2e-09
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	2e-06
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-09
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	2e-08
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	3e-08
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	8e-08
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	2e-04
3grl_A	651	General vesicular transport factor P115; vesicle t	1e-07
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	1e-06
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	1e-06
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	4e-06
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	1e-05
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	5e-05
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	2e-06
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	5e-06
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	8e-06
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	2e-04
1qgr_A	876	Protein (importin beta subunit); transport recepto	1e-05

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  469 bits (1208), Expect = e-163
 Identities = 217/412 (52%), Positives = 276/412 (66%), Gaps = 16/412 (3%)

Query: 9   TEVRRSKYK--VAVDAEEGRRRREDNMVEIRKNKREESLLKKRR---------EGLQAHQ 57
            E RR+ +K      A+E RRRR+   VE+RK KR+E+L K+R             +   
Sbjct: 14  PEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDES 73

Query: 58  PLTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVP 117
            ++      ++  + LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVP
Sbjct: 74  SVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVP 133

Query: 118 RFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQA 177
           R +EF+  +    LQ EAAWALTNIASGTS  T+VV+D  AVP+F++LL + + +V+EQA
Sbjct: 134 RLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQA 193

Query: 178 VWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLF 236
           +WALGNVAGDS   RD VL   A+ P+L  FN + K S++R ATWTLSN CRGK PQP +
Sbjct: 194 IWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDW 252

Query: 237 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS 296
                ALP L +LI+S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S
Sbjct: 253 SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES 312

Query: 297 PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356
             V  PALR VGNIVTG+D+QTQ +IN   LP L  LL  + K++IKKEACWTISNITAG
Sbjct: 313 TLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL-SSPKENIKKEACWTISNITAG 371

Query: 357 NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKY 406
           N  QIQA+I+A +I PLV LL  AE++ KKEA WAISNA+SGG    + I+Y
Sbjct: 372 NTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRY 423

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  172 bits (436), Expect = 2e-48
 Identities = 65/337 (19%), Positives = 125/337 (37%), Gaps = 19/337 (5%)

Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
           +P  +  +++    ++  A      + + + +   + V+Q   +   +   + +  P L 
Sbjct: 175 VPLFIQLLYTGSVEVKEQAIWALGNV-AGDSTDYRDYVLQCNAMEPILGLFNSNK-PSLI 232

Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
             A W L+N+  G        +   A+P   +L+ S   +    A WA+  ++    +  
Sbjct: 233 RTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAI 292

Query: 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP-QPLFEQTRPALPALERLIH 251
             V+        L +   H    +   A   + N   G   Q         LPAL  L+ 
Sbjct: 293 QAVIDVRIP-KRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLS 351

Query: 252 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311
           S  + +  +ACW +S ++ G  ++IQAVI+A + P LV+LL          A   + N  
Sbjct: 352 SPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNAS 411

Query: 312 TGDDM---QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI-----------TAGN 357
           +G        + +++   +  L DLL     + I +     + NI               
Sbjct: 412 SGGLQRPDIIRYLVSQGCIKPLCDLLEIADNR-IIEVTLDALENILKMGEADKEARGLNI 470

Query: 358 VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN 394
                 I +AG +  + N   N   +I ++A   I  
Sbjct: 471 NENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIET 507

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  450 bits (1159), Expect = e-156
 Identities = 183/390 (46%), Positives = 246/390 (63%), Gaps = 7/390 (1%)

Query: 23  EEGRRRREDNMVEIRKNKREESLLKKRREGLQ-AHQPLTNSAALDNKKLESLPAMVAGVW 81
             G   R   M E    K E   +     G     + + +  +       S+  +V G+ 
Sbjct: 8   SSGLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGIN 67

Query: 82  SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTN 141
           S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +QFE+AWALTN
Sbjct: 68  SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTN 127

Query: 142 IASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL 201
           IASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    RDLV+ +GA+
Sbjct: 128 IASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAI 187

Query: 202 MPLLAQFNEH----AKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDE 256
            PLLA              LRN TWTLSN CR K P P  +     LP L RL+H ND E
Sbjct: 188 DPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPE 247

Query: 257 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM 316
           VL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR +GNIVTG D 
Sbjct: 248 VLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDE 307

Query: 317 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNL 376
           QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +QIQ ++  G++  LV +
Sbjct: 308 QTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGV 366

Query: 377 LLNAEFEIKKEAAWAISNATSGGSNEQIKY 406
           L  A+F+ +KEAAWAI+N TSGG+ EQI Y
Sbjct: 367 LSKADFKTQKEAAWAITNYTSGGTVEQIVY 396

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  179 bits (455), Expect = 2e-51
 Identities = 71/346 (20%), Positives = 130/346 (37%), Gaps = 23/346 (6%)

Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
           +PA ++ + S   +I   A      + + + S   + VI+ G +   +  L+  D   L 
Sbjct: 145 IPAFISLLASPHAHISEQAVWALGNI-AGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLA 203

Query: 133 FE----AAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 188
                   W L+N+    +    +      +P  VRLL     +V   + WA+  +    
Sbjct: 204 CGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP 263

Query: 189 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTR-----PAL 243
            +  ++V+  G + P L +     +L ++  A   + N   G      EQT+      AL
Sbjct: 264 NERIEMVVKKGVV-PQLVKLLGATELPIVTPALRAIGNIVTGTD----EQTQKVIDAGAL 318

Query: 244 PALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPA 303
                L+ +    +  +A W +S ++ G  D+IQ V+  G+ P LV +L          A
Sbjct: 319 AVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEA 378

Query: 304 LRTVGNIVT-GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI------TAG 356
              + N  + G   Q   +++   +  L++LL+    K I +     ISNI         
Sbjct: 379 AWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK-IIQVILDAISNIFQAAEKLGE 437

Query: 357 NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNE 402
                  I E G +  +  L  +    + K +   I    S    E
Sbjct: 438 TEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEE 483

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  155 bits (393), Expect = 2e-42
 Identities = 58/281 (20%), Positives = 119/281 (42%), Gaps = 11/281 (3%)

Query: 99  LSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGA 158
           L   ++P         ++P  +  L  +D P++  ++ WA++ +  G +E   +V+  G 
Sbjct: 217 LCRNKNPAPPLDAVEQILPTLVRLLHHND-PEVLADSCWAISYLTDGPNERIEMVVKKGV 275

Query: 159 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLR 218
           VP  V+LL +    +   A+ A+GN+   + +    V+  GAL  +      + K ++ +
Sbjct: 276 VPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGAL-AVFPSLLTNPKTNIQK 334

Query: 219 NATWTLSNFCRGKP-QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL-SDGTNDKI 276
            ATWT+SN   G+  Q         +P L  ++   D +   +A WA++   S GT ++I
Sbjct: 335 EATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQI 394

Query: 277 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI------VTGDDMQTQCIINHQALPCL 330
             ++  G+   L+ LL      ++   L  + NI      +   +  +  I     L  +
Sbjct: 395 VYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKI 454

Query: 331 LDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIG 371
             L  ++  +S+ K +   I    +    + Q ++      
Sbjct: 455 EALQ-RHENESVYKASLNLIEKYFSVEEEEDQNVVPETTSE 494

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  150 bits (380), Expect = 9e-41
 Identities = 58/258 (22%), Positives = 116/258 (44%), Gaps = 11/258 (4%)

Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
           LP +V  +  +D  +  D+      L +   +  I  V++ GVVP+ ++ L   +   + 
Sbjct: 234 LPTLVRLLHHNDPEVLADSCWAISYL-TDGPNERIEMVVKKGVVPQLVKLLGATE-LPIV 291

Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
             A  A+ NI +GT E T+ VID GA+ +F  LL++P  +++++A W + N+        
Sbjct: 292 TPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQI 351

Query: 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG--KPQPLFEQTRPALPALERLI 250
             V+++G + P L      A     + A W ++N+  G    Q ++      +  L  L+
Sbjct: 352 QQVVNHGLV-PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLL 410

Query: 251 HSNDDEVLTDACWALSYL------SDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPAL 304
            + D +++     A+S +         T      + E G   ++  L RH + SV   +L
Sbjct: 411 SAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASL 470

Query: 305 RTVGNIVTGDDMQTQCII 322
             +    + ++ + Q ++
Sbjct: 471 NLIEKYFSVEEEEDQNVV 488

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 94.7 bits (235), Expect = 3e-21
 Identities = 41/220 (18%), Positives = 88/220 (40%), Gaps = 11/220 (5%)

Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
           +P +V  + + +  I   A      +++        +VI +G +  F   L+      +Q
Sbjct: 276 VPQLVKLLGATELPIVTPALRAIGNIVT-GTDEQTQKVIDAGALAVFPSLLTNPK-TNIQ 333

Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA-GDSPKC 191
            EA W ++NI +G  +  + V++HG VP  V +LS      +++A WA+ N   G + + 
Sbjct: 334 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQ 393

Query: 192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR-GKPQPLFEQTRP------ALP 244
              ++  G + PL+   +      +++     +SN  +  +     E+          L 
Sbjct: 394 IVYLVHCGIIEPLMNLLS-AKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLD 452

Query: 245 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 284
            +E L    ++ V   +   +        ++ Q V+    
Sbjct: 453 KIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETT 492

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  437 bits (1125), Expect = e-152
 Identities = 208/337 (61%), Positives = 244/337 (72%), Gaps = 3/337 (0%)

Query: 72  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQS-GVVPRFIEFLSRDDFPQ 130
               M+  ++S     QL AT +FRKLLS E +PPI+EVI + GVV RF+EFL R +   
Sbjct: 21  ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCT 80

Query: 131 LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 190
           LQFE+AW LTNIASG S  TR+VI  GAVPIF+ LLSS  +DV+EQAVWALGN+AGDS  
Sbjct: 81  LQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTM 140

Query: 191 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERL 249
           CRD VL    L PLL  F++  +L+M RNA W LSN CRGK P P F +  P L  L  L
Sbjct: 141 CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWL 200

Query: 250 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 309
           +  +D +VL DACWALSYLSDG NDKIQAVI+AGVC RLVELL H    V+ PALR VGN
Sbjct: 201 LFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260

Query: 310 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGI 369
           IVTGDD+QTQ I+N  AL  LL LL  + K+SIKKEACWTISNITAGN  QIQ +I+A I
Sbjct: 261 IVTGDDIQTQVILNCSALQSLLHLL-SSPKESIKKEACWTISNITAGNRAQIQTVIDANI 319

Query: 370 IGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY 406
              L+++L  AEF  +KEAAWAI+NATSGGS EQIKY
Sbjct: 320 FPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKY 356

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  184 bits (468), Expect = 8e-54
 Identities = 72/339 (21%), Positives = 132/339 (38%), Gaps = 24/339 (7%)

Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
           +P  +  + S+  ++Q  A      + + + +   + V+   ++P  ++  S+ +   + 
Sbjct: 109 VPIFIELLSSEFEDVQEQAVWALGNI-AGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMT 167

Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
             A WAL+N+  G S           + +   LL     DV   A WAL  ++       
Sbjct: 168 RNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKI 227

Query: 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTR-----PALPALE 247
             V+  G     L +   H    ++  A   + N   G       QT+      AL +L 
Sbjct: 228 QAVIDAGVC-RRLVELLMHNDYKVVSPALRAVGNIVTGDD----IQTQVILNCSALQSLL 282

Query: 248 RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 307
            L+ S  + +  +ACW +S ++ G   +IQ VI+A + P L+ +L+         A   +
Sbjct: 283 HLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAI 342

Query: 308 GNIVTGDDM-QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI----------TAG 356
            N  +G    Q + ++    +  L DLLT    K I + A   + NI             
Sbjct: 343 TNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSK-IVQVALNGLENILRLGEQEAKRNGT 401

Query: 357 NVNQI-QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN 394
            +N     I EA  +  +  L  +   EI ++A   I +
Sbjct: 402 GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEH 440

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  184 bits (468), Expect = 9e-54
 Identities = 71/300 (23%), Positives = 118/300 (39%), Gaps = 13/300 (4%)

Query: 114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT--RVVIDHGAVPIFVRLLSSPTD 171
            +    IE +     P+ Q  A      + S         V+   G V  FV  L    +
Sbjct: 20  VITSDMIEMIFSKS-PEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKEN 78

Query: 172 -DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230
             ++ ++ W L N+A  +     +V+  GA+ P+  +        +   A W L N    
Sbjct: 79  CTLQFESAWVLTNIASGNSLQTRIVIQAGAV-PIFIELLSSEFEDVQEQAVWALGNIAGD 137

Query: 231 KPQP---LFEQTRPALPALERLIHSNDD-EVLTDACWALSYLSDGTNDKIQAVIEAGVCP 286
                  + +     LP L +L    +   +  +A WALS L  G +   +    +    
Sbjct: 138 STMCRDYVLDC--NILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLN 195

Query: 287 RLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEA 346
            L  LL      VL  A   +  +  G + + Q +I+      L++LL  N    +   A
Sbjct: 196 VLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHN-DYKVVSPA 254

Query: 347 CWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY 406
              + NI  G+  Q Q I+    +  L++LL + +  IKKEA W ISN T+ G+  QI+ 
Sbjct: 255 LRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITA-GNRAQIQT 313

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  147 bits (373), Expect = 4e-40
 Identities = 44/267 (16%), Positives = 97/267 (36%), Gaps = 44/267 (16%)

Query: 141 NIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA--GDSPKCRDLVLSN 198
                   N  +          + ++ S + + +  A      +     +P   +++ + 
Sbjct: 4   GFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTP 63

Query: 199 GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVL 258
           G +                                            +E L    +  + 
Sbjct: 64  GVVARF-----------------------------------------VEFLKRKENCTLQ 82

Query: 259 TDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT 318
            ++ W L+ ++ G + + + VI+AG  P  +ELL      V   A+  +GNI     M  
Sbjct: 83  FESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCR 142

Query: 319 QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL 378
             +++   LP LL L ++  + ++ + A W +SN+  G     +    +  +  L  LL 
Sbjct: 143 DYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLF 202

Query: 379 NAEFEIKKEAAWAISNATSGGSNEQIK 405
            ++ ++  +A WA+S  +  G N++I+
Sbjct: 203 VSDTDVLADACWALSYLSD-GPNDKIQ 228

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  299 bits (766), Expect = 1e-95
 Identities = 50/338 (14%), Positives = 109/338 (32%), Gaps = 10/338 (2%)

Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
           + A+V  + + +       T      LS  R   +  + +SG +P  ++ L       + 
Sbjct: 58  VSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL-AIFKSGGIPALVKMLGSPV-DSVL 115

Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
           F A   L N+          V   G +   V LL+             L  +A  + + +
Sbjct: 116 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 175

Query: 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS 252
            ++L++G    L+     +    +L   +  L                  + AL   +  
Sbjct: 176 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD 235

Query: 253 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 312
               ++ +  W L  LSD    +       G+   LV+LL     +V+  A   + N+  
Sbjct: 236 PSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTC 292

Query: 313 GDDMQTQCIINHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAGNVN---QIQAIIEAG 368
            +      +     +  L+  + +   ++ I + A   + ++T+ +        A+    
Sbjct: 293 NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHY 352

Query: 369 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY 406
            +  +V LL         +A   +    +         
Sbjct: 353 GLPVVVKLLHPPSHWPLIKATVGLIRNLA-LCPANHAP 389

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  221 bits (564), Expect = 5e-66
 Identities = 72/336 (21%), Positives = 124/336 (36%), Gaps = 12/336 (3%)

Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
           +P +   +  +D+ +   A     +L   E S     +    +V   +  +   +  +  
Sbjct: 16  IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDVETA 74

Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
              A  L N+ S   E    +   G +P  V++L SP D V   A+  L N+       +
Sbjct: 75  RCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 133

Query: 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIH 251
             V   G L   +        +  L   T  L     G  +  L         AL  ++ 
Sbjct: 134 MAVRLAGGL-QKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 192

Query: 252 SNDDEVLT-DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 310
           +   E L       L  LS  +++K  A++EAG    L   L  PS  ++   L T+ N+
Sbjct: 193 TYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 251

Query: 311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGII 370
               D  T+       L  L+ LL  +   ++   A   +SN+T  N      + + G I
Sbjct: 252 ---SDAATKQEGMEGLLGTLVQLL-GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 307

Query: 371 GPLVNLLLNA--EFEIKKEAAWAISNATSGGSNEQI 404
             LV  +L A    +I + A  A+ + TS     ++
Sbjct: 308 EALVRTVLRAGDREDITEPAICALRHLTSRHQEAEM 343

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  215 bits (550), Expect = 5e-64
 Identities = 59/337 (17%), Positives = 119/337 (35%), Gaps = 13/337 (3%)

Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
           +PA+V  + S   ++   A T    LL  +    +  V  +G + + +  L++ +  +  
Sbjct: 100 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM-AVRLAGGLQKMVALLNKTN-VKFL 157

Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTD-DVREQAVWALGNVAGDSPKC 191
                 L  +A G  E+  +++  G     V ++ + T   +       L  ++      
Sbjct: 158 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSN 216

Query: 192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH 251
           +  ++  G +   L          +++N  WTL N      +    +    L  L +L+ 
Sbjct: 217 KPAIVEAGGM-QALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGME--GLLGTLVQLLG 273

Query: 252 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR--HPSPSVLIPALRTVGN 309
           S+D  V+T A   LS L+         V + G    LV  +        +  PA+  + +
Sbjct: 274 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 333

Query: 310 IVTGDD---MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE 366
           + +      M    +  H  LP ++ LL          +A   +    A        + E
Sbjct: 334 LTSRHQEAEMAQNAVRLHYGLPVVVKLL-HPPSHWPLIKATVGLIRNLALCPANHAPLRE 392

Query: 367 AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ 403
            G I  LV LL+ A  + ++  +   +          
Sbjct: 393 QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRM 429

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  209 bits (533), Expect = 1e-61
 Identities = 50/299 (16%), Positives = 112/299 (37%), Gaps = 9/299 (3%)

Query: 107 INEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLL 166
            +  + +  +P   + L+ +D   +  +AA  +  ++   +    ++     V   VR +
Sbjct: 7   DDAELATRAIPELTKLLNDED-QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 65

Query: 167 SSPTD-DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS 225
            +  D +        L N++    +    +  +G + P L +       S+L  A  TL 
Sbjct: 66  QNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGI-PALVKMLGSPVDSVLFYAITTLH 123

Query: 226 NFCRGKPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 284
           N    +    +  +    L  +  L++  + + L      L  L+ G  +    ++ +G 
Sbjct: 124 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 183

Query: 285 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK 344
              LV ++R  +   L+     V  +++        I+    +  L   L  +  + + +
Sbjct: 184 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL-TDPSQRLVQ 242

Query: 345 EACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ 403
              WT+ N++     Q       G++G LV LL + +  +   AA  +SN T      +
Sbjct: 243 NCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 298

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  192 bits (488), Expect = 3e-55
 Identities = 43/257 (16%), Positives = 90/257 (35%), Gaps = 1/257 (0%)

Query: 148 ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQ 207
                 +   A+P   +LL+     V  +A   +  ++        ++ S   +  ++  
Sbjct: 5   YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 64

Query: 208 FNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSY 267
                 +   R    TL N    +   L       +PAL +++ S  D VL  A   L  
Sbjct: 65  MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 124

Query: 268 LSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQAL 327
           L         AV  AG   ++V LL   +   L      +  +  G+      I+     
Sbjct: 125 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 184

Query: 328 PCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKE 387
             L++++     + +       +  ++  + N+  AI+EAG +  L   L +    + + 
Sbjct: 185 QALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQN 243

Query: 388 AAWAISNATSGGSNEQI 404
             W + N +   + ++ 
Sbjct: 244 CLWTLRNLSDAATKQEG 260

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  191 bits (486), Expect = 8e-55
 Identities = 63/359 (17%), Positives = 118/359 (32%), Gaps = 33/359 (9%)

Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
             A+V  + +      L  T++  K+LS+  S     ++++G +      L+     +L 
Sbjct: 184 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP-AIVEAGGMQALGLHLTDPS-QRLV 241

Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
               W L N++      T+     G +   V+LL S   +V   A   L N+  ++ K +
Sbjct: 242 QNCLWTLRNLSD---AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 298

Query: 193 DLVLSNGALMPLL-AQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRP----ALPALE 247
            +V   G +  L+        +  +   A   L +      +    Q        LP + 
Sbjct: 299 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV 358

Query: 248 RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 307
           +L+H      L  A   L             + E G  PRLV+LL               
Sbjct: 359 KLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG 418

Query: 308 GNIVTGDDMQT---------------------QCIINHQALPCLLDLLTQNYKKSIKKEA 346
                 + ++                        I     +P  + LL  +  ++I++ A
Sbjct: 419 TQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLL-YSPIENIQRVA 477

Query: 347 CWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIK 405
              +  + A +    +AI   G   PL  LL +    +   AA  +   +     +  K
Sbjct: 478 AGVLCEL-AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKK 535

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  132 bits (334), Expect = 5e-34
 Identities = 52/326 (15%), Positives = 100/326 (30%), Gaps = 31/326 (9%)

Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFL-SRDDFPQL 131
           L  +V  + SDD N+   A      L +         V Q G +   +  +    D   +
Sbjct: 265 LGTLVQLLGSDDINVVTCAAGILSNL-TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDI 323

Query: 132 QFEAAWALTNIASGTSENTRV---VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 188
              A  AL ++ S   E       V  H  +P+ V+LL  P+     +A   L       
Sbjct: 324 TEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 383

Query: 189 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER 248
           P     +   GA+ P L Q    A     R  +   +     +                 
Sbjct: 384 PANHAPLREQGAI-PRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV--------------- 427

Query: 249 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 308
                 +E++     AL  L+   +++   +      P  V+LL  P  ++   A   + 
Sbjct: 428 ----RMEEIVEGCTGALHILARDVHNR-IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLC 482

Query: 309 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG 368
            +    +   + I    A   L +LL  +  + +   A   +  ++       +  +   
Sbjct: 483 ELAQDKEAA-EAIEAEGATAPLTELL-HSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVE 540

Query: 369 IIGPLVNLLLNAEFEIKKEAAWAISN 394
           +     +L         + A   +  
Sbjct: 541 L---TSSLFRTEPMAWNETADLGLDI 563

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 94.6 bits (235), Expect = 4e-21
 Identities = 21/132 (15%), Positives = 46/132 (34%), Gaps = 1/132 (0%)

Query: 273 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD 332
           N +  A +     P L +LL      V+  A   V  +   +  +   + + Q +  ++ 
Sbjct: 4   NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR 63

Query: 333 LLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAI 392
            +         +    T+ N++        AI ++G I  LV +L +    +   A   +
Sbjct: 64  TMQNTNDVETARCTAGTLHNLSHHREGL-LAIFKSGGIPALVKMLGSPVDSVLFYAITTL 122

Query: 393 SNATSGGSNEQI 404
            N        ++
Sbjct: 123 HNLLLHQEGAKM 134

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 72.7 bits (178), Expect = 7e-14
 Identities = 33/189 (17%), Positives = 48/189 (25%), Gaps = 13/189 (6%)

Query: 83  DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNI 142
               I    T     L     +     +     +P F++ L       +Q  AA  L  +
Sbjct: 428 RMEEIVEGCTGALHILARDVHN--RIVIRGLNTIPLFVQLLYSPI-ENIQRVAAGVLCEL 484

Query: 143 ASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALM 202
           A    E    +   GA      LL S  + V   A   L  ++ D P+     LS     
Sbjct: 485 AQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTS 543

Query: 203 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDAC 262
            L               A   L    +G+P               R  HS          
Sbjct: 544 SLFRTEPMAWN----ETADLGLDIGAQGEPLG-----YRQDDPSYRSFHSGGYGQDALGM 594

Query: 263 WALSYLSDG 271
             +     G
Sbjct: 595 DPMMEHEMG 603

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  294 bits (755), Expect = 2e-95
 Identities = 50/332 (15%), Positives = 109/332 (32%), Gaps = 9/332 (2%)

Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
           + A+V  + + +       T      LS  R   +  + +SG +P  ++ L       + 
Sbjct: 61  VSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL-AIFKSGGIPALVKMLGSPV-DSVL 118

Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
           F A   L N+          V   G +   V LL+             L  +A  + + +
Sbjct: 119 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 178

Query: 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS 252
            ++L++G    L+     +    +L   +  L                  + AL   +  
Sbjct: 179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD 238

Query: 253 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 312
               ++ +  W L  LSD    +       G+   LV+LL     +V+  A   + N+  
Sbjct: 239 PSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTC 295

Query: 313 GDDMQTQCIINHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAGNVN---QIQAIIEAG 368
            +      +     +  L+  + +   ++ I + A   + ++T+ +        A+    
Sbjct: 296 NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHY 355

Query: 369 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400
            +  +V LL         +A   +    +   
Sbjct: 356 GLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 387

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  235 bits (602), Expect = 1e-72
 Identities = 68/335 (20%), Positives = 119/335 (35%), Gaps = 10/335 (2%)

Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
           +P +   +  +D+ +   A     +L   E S     +    +V   +  +   +  +  
Sbjct: 19  IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDVETA 77

Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
              A  L N+ S   E    +   G +P  V++L SP D V   A+  L N+       +
Sbjct: 78  RCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136

Query: 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP-QPLFEQTRPALPALERLIH 251
             V   G L   +        +  L   T  L     G     L         AL  ++ 
Sbjct: 137 MAVRLAGGL-QKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 195

Query: 252 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311
           +   E L      +  +    +    A++EAG    L   L  PS  ++   L T+ N+ 
Sbjct: 196 TYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL- 254

Query: 312 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIG 371
              D  T+       L  L+ LL  +   ++   A   +SN+T  N      + + G I 
Sbjct: 255 --SDAATKQEGMEGLLGTLVQLLGSD-DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE 311

Query: 372 PLVNLLLNA--EFEIKKEAAWAISNATSGGSNEQI 404
            LV  +L A    +I + A  A+ + TS     ++
Sbjct: 312 ALVRTVLRAGDREDITEPAICALRHLTSRHQEAEM 346

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  213 bits (544), Expect = 4e-64
 Identities = 59/337 (17%), Positives = 117/337 (34%), Gaps = 13/337 (3%)

Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
           +PA+V  + S   ++   A T    L  + +      V  +G + + +  L++ +  +  
Sbjct: 103 IPALVKMLGSPVDSVLFYAITTLHNL-LLHQEGAKMAVRLAGGLQKMVALLNKTN-VKFL 160

Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTD-DVREQAVWALGNVAGDSPKC 191
                 L  +A G  E+  +++  G     V ++ + T   +       L  ++      
Sbjct: 161 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSN 219

Query: 192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH 251
           +  ++  G +   L          +++N  WTL N      +         L  L +L+ 
Sbjct: 220 KPAIVEAGGM-QALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLG 276

Query: 252 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI--PALRTVGN 309
           S+D  V+T A   LS L+         V + G    LV  +        I  PA+  + +
Sbjct: 277 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 336

Query: 310 IVTGDD---MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE 366
           + +      M    +  H  LP ++ LL          +A   +    A        + E
Sbjct: 337 LTSRHQEAEMAQNAVRLHYGLPVVVKLL-HPPSHWPLIKATVGLIRNLALCPANHAPLRE 395

Query: 367 AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ 403
            G I  LV LL+ A  + ++  +   +          
Sbjct: 396 QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRM 432

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  202 bits (515), Expect = 6e-60
 Identities = 44/267 (16%), Positives = 93/267 (34%), Gaps = 4/267 (1%)

Query: 138 ALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS 197
           A+ N+ +         +   A+P   +LL+     V  +A   +  ++        ++ S
Sbjct: 1   AVVNLIN---YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57

Query: 198 NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEV 257
              +  ++        +   R    TL N    +   L       +PAL +++ S  D V
Sbjct: 58  PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSV 117

Query: 258 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ 317
           L  A   L  L         AV  AG   ++V LL   +   L      +  +  G+   
Sbjct: 118 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 177

Query: 318 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL 377
              I+       L++++     + +       +  + +   +   AI+EAG +  L   L
Sbjct: 178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLHL 236

Query: 378 LNAEFEIKKEAAWAISNATSGGSNEQI 404
            +    + +   W + N +   + ++ 
Sbjct: 237 TDPSQRLVQNCLWTLRNLSDAATKQEG 263

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  192 bits (490), Expect = 3e-56
 Identities = 50/299 (16%), Positives = 110/299 (36%), Gaps = 9/299 (3%)

Query: 107 INEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLL 166
            +  + +  +P   + L+ +D   +  +AA  +  ++   +    ++     V   VR +
Sbjct: 10  DDAELATRAIPELTKLLNDED-QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 68

Query: 167 SSPTD-DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS 225
            +  D +        L N++    +    +  +G + P L +       S+L  A  TL 
Sbjct: 69  QNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGI-PALVKMLGSPVDSVLFYAITTLH 126

Query: 226 NFCRGKPQPLFEQTRP-ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 284
           N    +            L  +  L++  + + L      L  L+ G  +    ++ +G 
Sbjct: 127 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 186

Query: 285 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK 344
              LV ++R  +   L+     V  +++        I+    +  L   L  +  + + +
Sbjct: 187 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL-TDPSQRLVQ 245

Query: 345 EACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ 403
              WT+ N++     Q       G++G LV LL + +  +   AA  +SN T      +
Sbjct: 246 NCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 301

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  183 bits (467), Expect = 6e-53
 Identities = 61/348 (17%), Positives = 115/348 (33%), Gaps = 33/348 (9%)

Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
             A+V  + +      L  T++  K+LS+  S     ++++G +      L+     +L 
Sbjct: 187 PQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPS-QRLV 244

Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
               W L N++      T+     G +   V+LL S   +V   A   L N+  ++ K +
Sbjct: 245 QNCLWTLRNLSD---AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 301

Query: 193 DLVLSNGALMPLLAQ-FNEHAKLSMLRNATWTLSNFCRGKPQP----LFEQTRPALPALE 247
            +V   G +  L+        +  +   A   L +      +        +    LP + 
Sbjct: 302 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV 361

Query: 248 RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 307
           +L+H      L  A   L             + E G  PRLV+LL               
Sbjct: 362 KLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG 421

Query: 308 GNIVTGDDMQT---------------------QCIINHQALPCLLDLLTQNYKKSIKKEA 346
                 + ++                        I     +P  + LL  +  ++I++ A
Sbjct: 422 TQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLL-YSPIENIQRVA 480

Query: 347 CWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN 394
              +  + A +    +AI   G   PL  LL +    +   AA  +  
Sbjct: 481 AGVLCEL-AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFR 527

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  117 bits (294), Expect = 8e-29
 Identities = 51/286 (17%), Positives = 93/286 (32%), Gaps = 28/286 (9%)

Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFL-SRDDFPQL 131
           L  +V  + SDD N+   A      L +         V Q G +   +  +    D   +
Sbjct: 268 LGTLVQLLGSDDINVVTCAAGILSNL-TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDI 326

Query: 132 QFEAAWALTNIASGTSENTRV---VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 188
              A  AL ++ S   E       V  H  +P+ V+LL  P+     +A   L       
Sbjct: 327 TEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 386

Query: 189 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER 248
           P     +   GA+ P L Q    A     R  +   +     +                 
Sbjct: 387 PANHAPLREQGAI-PRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV--------------- 430

Query: 249 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 308
                 +E++     AL  L+   +++I  +      P  V+LL  P  ++   A   + 
Sbjct: 431 ----RMEEIVEGCTGALHILARDVHNRI-VIRGLNTIPLFVQLLYSPIENIQRVAAGVLC 485

Query: 309 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT 354
            +    +   + I    A   L +LL  +  + +   A   +  ++
Sbjct: 486 ELAQDKEAA-EAIEAEGATAPLTELL-HSRNEGVATYAAAVLFRMS 529

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 95.6 bits (238), Expect = 2e-21
 Identities = 21/138 (15%), Positives = 50/138 (36%), Gaps = 1/138 (0%)

Query: 268 LSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQAL 327
           + +  N +  A +     P L +LL      V+  A   V  +   +  +   + + Q +
Sbjct: 2   VVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMV 61

Query: 328 PCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKE 387
             ++  +         +    T+ N+ + +   + AI ++G I  LV +L +    +   
Sbjct: 62  SAIVRTMQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFY 120

Query: 388 AAWAISNATSGGSNEQIK 405
           A   + N        ++ 
Sbjct: 121 AITTLHNLLLHQEGAKMA 138

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  273 bits (699), Expect = 1e-90
 Identities = 90/241 (37%), Positives = 135/241 (56%), Gaps = 4/241 (1%)

Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
           LP M   + SDD   QL AT +F ++LS + +  I  VI +G +P  ++ LS  +  Q+ 
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPN-EQIL 71

Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
            EA WAL+NIASG +E  + VID GA+P  V+LLSSP + + ++A+WAL N+A    +  
Sbjct: 72  QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131

Query: 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP-QPLFEQTRPALPALERLIH 251
             V+  GAL P L Q        +L+ A W LSN   G   Q        ALPAL +L+ 
Sbjct: 132 QAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS 190

Query: 252 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311
           S ++++L +A WALS ++ G N++ QAV EAG   +L +L  H +  +   A   +  + 
Sbjct: 191 SPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250

Query: 312 T 312
           +
Sbjct: 251 S 251

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  216 bits (552), Expect = 2e-68
 Identities = 67/165 (40%), Positives = 99/165 (60%), Gaps = 2/165 (1%)

Query: 242 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 301
            LP + + ++S+D +    A    S +    N++IQAVI+AG  P LV+LL  P+  +L 
Sbjct: 13  ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 302 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI 361
            AL  + NI +G + Q Q +I+  ALP L+ LL  +  + I +EA W +SNI +G   QI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQI 131

Query: 362 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY 406
           QA+I+AG +  LV LL +   +I +EA WA+SN  S G NEQI+ 
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS-GGNEQIQA 175

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  172 bits (438), Expect = 2e-51
 Identities = 79/245 (32%), Positives = 120/245 (48%), Gaps = 43/245 (17%)

Query: 157 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSM 216
             +P   + L+S     +  A      +  D  +    V+  GAL               
Sbjct: 12  SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGAL--------------- 56

Query: 217 LRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKI 276
                                      PAL +L+ S ++++L +A WALS ++ G N++I
Sbjct: 57  ---------------------------PALVQLLSSPNEQILQEALWALSNIASGGNEQI 89

Query: 277 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ 336
           QAVI+AG  P LV+LL  P+  +L  AL  + NI +G + Q Q +I+  ALP L+ LL  
Sbjct: 90  QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-S 148

Query: 337 NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 396
           +  + I +EA W +SNI +G   QIQA+I+AG +  LV LL +   +I +EA WA+SN  
Sbjct: 149 SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 208

Query: 397 SGGSN 401
           SGG+ 
Sbjct: 209 SGGNE 213

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 1/45 (2%)

Query: 361 IQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIK 405
                    +  +   L + + + +  A    S   S   NEQI+
Sbjct: 5   HHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQ 48

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  245 bits (626), Expect = 5e-74
 Identities = 68/335 (20%), Positives = 122/335 (36%), Gaps = 10/335 (2%)

Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
           +P +   +  +D+ +   A     +L   E S     +    +V   +  +   +  +  
Sbjct: 152 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDVETA 210

Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
              +  L N++    E    +   G +P  V +L SP D V   A+  L N+       +
Sbjct: 211 RCTSGTLHNLSHH-REGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAK 269

Query: 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP-QPLFEQTRPALPALERLIH 251
             V   G L  ++A  N    +  L   T  L     G     L         AL  ++ 
Sbjct: 270 MAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 328

Query: 252 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311
           +   E L      +  +    +    A++EAG    L   L  PS  ++   L T+ N+ 
Sbjct: 329 TYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL- 387

Query: 312 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIG 371
              D  T+       L  L+ LL  +   ++   A   +SN+T  N      + + G I 
Sbjct: 388 --SDAATKQEGMEGLLGTLVQLL-GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE 444

Query: 372 PLVNLLLNA--EFEIKKEAAWAISNATSGGSNEQI 404
            LV  +L A    +I + A  A+ + TS   + ++
Sbjct: 445 ALVRTVLRAGDREDITEPAICALRHLTSRHQDAEM 479

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  232 bits (592), Expect = 4e-69
 Identities = 54/345 (15%), Positives = 111/345 (32%), Gaps = 8/345 (2%)

Query: 62  SAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIE 121
              +  +  +            D + Q   T   R      R+    E +  G+     +
Sbjct: 58  DNQVLYEWEQGFNQSFNQEQVADIDGQYAMTRAQR-----VRAAMFPETLDEGMQIPSTQ 112

Query: 122 FL-SRDDFPQLQFEAAWALTNIASG-TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVW 179
           F  +     Q   E +  L +      +      +   A+P   +LL+     V  +A  
Sbjct: 113 FDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAV 172

Query: 180 ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 239
            +  ++        ++ S   +  ++        +   R  + TL N    +   L    
Sbjct: 173 MVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFK 232

Query: 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 299
              +PAL  ++ S  D VL  A   L  L         AV  AG   ++V LL   +   
Sbjct: 233 SGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKF 292

Query: 300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 359
           L      +  +  G+      I+       L++++ + Y           +  + +   +
Sbjct: 293 LAITTDCLQILAYGNQESKLIILASGGPQALVNIM-RTYTYEKLLWTTSRVLKVLSVCSS 351

Query: 360 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI 404
              AI+EAG +  L   L +    + +   W + N +   + ++ 
Sbjct: 352 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEG 396

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  216 bits (552), Expect = 2e-63
 Identities = 58/339 (17%), Positives = 119/339 (35%), Gaps = 13/339 (3%)

Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
           +PA+V  + S   ++   A T    L  + +      V  +G + + +  L++ +  +  
Sbjct: 236 IPALVNMLGSPVDSVLFHAITTLHNL-LLHQEGAKMAVRLAGGLQKMVALLNKTN-VKFL 293

Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDD-VREQAVWALGNVAGDSPKC 191
                 L  +A G  E+  +++  G     V ++ + T + +       L  ++      
Sbjct: 294 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSN 352

Query: 192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH 251
           +  ++  G +   L          +++N  WTL N      +         L  L +L+ 
Sbjct: 353 KPAIVEAGGM-QALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLG 409

Query: 252 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR--HPSPSVLIPALRTVGN 309
           S+D  V+T A   LS L+         V + G    LV  +        +  PA+  + +
Sbjct: 410 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 469

Query: 310 IVTGDD---MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE 366
           + +      M    +  H  LP ++ LL          +A   +    A        + E
Sbjct: 470 LTSRHQDAEMAQNAVRLHYGLPVVVKLL-HPPSHWPLIKATVGLIRNLALCPANHAPLRE 528

Query: 367 AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIK 405
            G I  LV LL+ A  + ++  +   +           +
Sbjct: 529 QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEE 567

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  207 bits (529), Expect = 3e-60
 Identities = 63/359 (17%), Positives = 118/359 (32%), Gaps = 33/359 (9%)

Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
             A+V  + +      L  T++  K+LS+  S     ++++G +      L  D   +L 
Sbjct: 320 PQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLV 377

Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
               W L N++      T+     G +   V+LL S   +V   A   L N+  ++ K +
Sbjct: 378 QNCLWTLRNLSDA---ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 434

Query: 193 DLVLSNGALMPLLAQ-FNEHAKLSMLRNATWTLSNFCRG----KPQPLFEQTRPALPALE 247
            +V   G +  L+        +  +   A   L +        +      +    LP + 
Sbjct: 435 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVV 494

Query: 248 RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 307
           +L+H      L  A   L             + E G  PRLV+LL               
Sbjct: 495 KLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG 554

Query: 308 GNIVTGDDMQT---------------------QCIINHQALPCLLDLLTQNYKKSIKKEA 346
                 + ++                        I     +P  + LL  +  ++I++ A
Sbjct: 555 TQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLL-YSPIENIQRVA 613

Query: 347 CWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIK 405
              +  + A +    +AI   G   PL  LL +    +   AA  +   +     +  K
Sbjct: 614 AGVLCEL-AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKK 671

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  149 bits (377), Expect = 2e-39
 Identities = 44/356 (12%), Positives = 107/356 (30%), Gaps = 33/356 (9%)

Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
           + A+   +    + +  +     R L          +    G++   ++ L  DD   + 
Sbjct: 362 MQALGLHLTDPSQRLVQNCLWTLRNLSDAAT----KQEGMEGLLGTLVQLLGSDD-INVV 416

Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLL--SSPTDDVREQAVWALGNVA---GD 187
             AA  L+N+     +N  +V   G +   VR +  +   +D+ E A+ AL ++     D
Sbjct: 417 TCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQD 476

Query: 188 SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALE 247
           +   ++ V  +  L  ++   +  +   +++     + N           + + A+P L 
Sbjct: 477 AEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLV 536

Query: 248 RLIHSNDDEVLTDACWALSYLSDG---------------------TNDKIQAVIEAGVCP 286
           +L+     +         +                                 +      P
Sbjct: 537 QLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIP 596

Query: 287 RLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEA 346
             V+LL  P  ++   A   +  +    +   + I    A   L +LL  +  + +   A
Sbjct: 597 LFVQLLYSPIENIQRVAAGVLCELAQDKE-AAEAIEAEGATAPLTELL-HSRNEGVATYA 654

Query: 347 CWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNE 402
              +  ++       +  +   +   L         E         +     G  +
Sbjct: 655 AAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMTWNETGDLGLDIGAQGEPLGYRQ 710

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  229 bits (585), Expect = 6e-74
 Identities = 67/162 (41%), Positives = 101/162 (62%), Gaps = 1/162 (0%)

Query: 242 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 301
            LP + + ++S D + L  A   LS ++ G N++IQAVI+AG  P LV+LL  P+  +L 
Sbjct: 13  ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 302 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI 361
            AL  + NI +G + Q Q +I+  ALP L+ LL  +  + I +EA W +SNI +G   QI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQI 131

Query: 362 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ 403
           QA+I+AG +  LV LL +   +I +EA WA+SN  SGG+ ++
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK 173

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  180 bits (460), Expect = 3e-55
 Identities = 78/289 (26%), Positives = 121/289 (41%), Gaps = 86/289 (29%)

Query: 109 EVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS 168
                  +P+ ++ L+  D  Q    A   L+ IASG +E  + VID GA+P  V+LLSS
Sbjct: 7   HHHHGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS 65

Query: 169 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 228
           P + + ++A+WAL N+A    +    V+  GAL  L+                       
Sbjct: 66  PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV----------------------- 102

Query: 229 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL 288
                              +L+ S ++++L +A WALS ++ G N++IQAVI+AG  P L
Sbjct: 103 -------------------QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPAL 143

Query: 289 VELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACW 348
           V+LL  P+  +                                            +EA W
Sbjct: 144 VQLLSSPNEQI-------------------------------------------LQEALW 160

Query: 349 TISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397
            +SNI +G   Q QA+ EAG +  L  L  +   +I+KEA  A+    S
Sbjct: 161 ALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  166 bits (422), Expect = 1e-49
 Identities = 72/258 (27%), Positives = 118/258 (45%), Gaps = 52/258 (20%)

Query: 55  AHQPLTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSG 114
           +H    + + L        P MV  + S D+     A  +    ++   +  I  VI +G
Sbjct: 4   SHHHHHHGSEL--------PQMVQQLNSPDQQELQSALRKLS-QIASGGNEQIQAVIDAG 54

Query: 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVR 174
            +P  ++ LS  +  Q+  EA WAL+NIASG +E  + VID GA+P  V+LLSSP + + 
Sbjct: 55  ALPALVQLLSSPN-EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 113

Query: 175 EQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP 234
           ++A+WAL N+A    +    V+  G                                   
Sbjct: 114 QEALWALSNIASGGNEQIQAVIDAG----------------------------------- 138

Query: 235 LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH 294
                  ALPAL +L+ S ++++L +A WALS ++ G N++ QAV EAG   +L +L  H
Sbjct: 139 -------ALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH 191

Query: 295 PSPSVLIPALRTVGNIVT 312
            +  +   A   +  + +
Sbjct: 192 ENEKIQKEAQEALEKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 362 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIK 405
                   +  +V  L + + +  + A   +S   S G NEQI+
Sbjct: 6   HHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIAS-GGNEQIQ 48

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  226 bits (578), Expect = 4e-71
 Identities = 59/338 (17%), Positives = 110/338 (32%), Gaps = 34/338 (10%)

Query: 88  QLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS 147
           Q+ A  +          P +++                         A   L  + S   
Sbjct: 15  QIRAYCETCWEWQEAHEPGMDQDKN----------PMPAPVEHQICPAVCVLMKL-SFDE 63

Query: 148 ENTRVVIDHGAVPIFVRLLSSPTD-----------DVREQAVWALGNVAGDSPKCRDLVL 196
           E+   + + G +     LL    +            +R  A  AL N+       +  + 
Sbjct: 64  EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC 123

Query: 197 SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTR--PALPALERL-IHSN 253
           S    M  L    +     + +     L N          +  R   ++ AL    +   
Sbjct: 124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK 183

Query: 254 DDEVLTDACWALSYLS-DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIP-------ALR 305
            +  L     AL  LS   T +K       G    LV  L + S +  +         LR
Sbjct: 184 KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILR 243

Query: 306 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII 365
            V +++  ++   Q +  +  L  LL  L +++  +I   AC T+ N++A N    +A+ 
Sbjct: 244 NVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQEALW 302

Query: 366 EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ 403
           + G +  L NL+ +    I   +A A+ N  +    + 
Sbjct: 303 DMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKY 340

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  190 bits (484), Expect = 4e-57
 Identities = 60/360 (16%), Positives = 118/360 (32%), Gaps = 33/360 (9%)

Query: 38  KNKREESLLKKRREGLQAHQPLTNSA-ALDNKKLESLPAMVAGVWSDDRNIQLDATTQFR 96
            +     +L      L+  +    +           +      + +   +    A     
Sbjct: 2   GHHHHHHMLHL----LEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLM 57

Query: 97  KLLSIERSPPINEVIQSGVVPRFIEFLSRD----------DFPQLQFEAAWALTNIASGT 146
           KL   E       + + G +    E L  D              L+  A  ALTN+  G 
Sbjct: 58  KLSFDEEHRH--AMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGD 115

Query: 147 SENTRVVI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVA-GDSPKCRDLVLSNGALMPL 204
             N   +    G +   V  L S ++D+++     L N++       +  +   G++  L
Sbjct: 116 VANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 175

Query: 205 LAQFNEHAKLSMLRNAT---WTLSNFCRGKPQPLFEQTRPALPALERLI----HSNDDEV 257
           +    E  K S L++     W LS  C      +      AL  L   +     +N   +
Sbjct: 176 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAV-DGALAFLVGTLTYRSQTNTLAI 234

Query: 258 LTDACWALSYLSD---GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD 314
           +      L  +S       D  Q + E      L++ L+  S +++  A  T+ N+   +
Sbjct: 235 IESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARN 294

Query: 315 DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN--QIQAIIEAGIIGP 372
               + + +  A+  L +L+  +  K I   +   + N+ A      +   I+  G   P
Sbjct: 295 PKDQEALWDMGAVSMLKNLI-HSKHKMIAMGSAAALRNLMANRPAKYKDANIMSPGSSLP 353

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 93.8 bits (233), Expect = 2e-21
 Identities = 29/185 (15%), Positives = 65/185 (35%), Gaps = 16/185 (8%)

Query: 235 LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR- 293
             E   P +   +  + +  +  +  A   L  LS     +  A+ E G    + ELL+ 
Sbjct: 26  WQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHR-HAMNELGGLQAIAELLQV 84

Query: 294 ----------HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQ-ALPCLLDLLTQNYKKSI 342
                     H S ++   A   + N+  GD      + + +  +  L+  L     + +
Sbjct: 85  DCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSE-SEDL 143

Query: 343 KKEACWTISNITAGNVNQIQ-AIIEAGIIGPLVNLLLNAEFE-IKKEAAWAISNATSGGS 400
           ++     + N++       +  + E G +  L+   L  + E   K    A+ N ++  +
Sbjct: 144 QQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 203

Query: 401 NEQIK 405
             +  
Sbjct: 204 ENKAD 208

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  204 bits (519), Expect = 3e-61
 Identities = 71/406 (17%), Positives = 133/406 (32%), Gaps = 79/406 (19%)

Query: 18  VAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKKLESLPAMV 77
           +    ++ R RRE  ++ + +  R         E  +AH+P              +    
Sbjct: 110 IHSQPDDKRGRREIRVLHLLEQIRAYCETC--WEWQEAHEP-------------GMDQDK 154

Query: 78  AGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD----------D 127
             + +   +    A     KL   E       + + G +    E L  D           
Sbjct: 155 NPMPAPVEHQICPAVCVLMKLSFDEEHRH--AMNELGGLQAIAELLQVDCEMYGLTNDHY 212

Query: 128 FPQLQFEAAWALTNIASGTSENTRVVI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVAG 186
              L+  A  ALTN+  G   N   +    G +   V  L S ++D+++     L N++ 
Sbjct: 213 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSW 272

Query: 187 D-SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPA 245
                 +  +   G++  L+                                        
Sbjct: 273 RADVNSKKTLREVGSVKALM---------------------------------------- 292

Query: 246 LERLIHSNDDEVLTDACWALSYLS-DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIP-- 302
            E  +    +  L     AL  LS   T +K       G    LV  L + S +  +   
Sbjct: 293 -ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAII 351

Query: 303 -----ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 357
                 LR V +++  ++   Q +  +  L  LL  L +++  +I   AC T+ N++A N
Sbjct: 352 ESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARN 410

Query: 358 VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ 403
               +A+ + G +  L NL+ +    I   +A A+ N  +    + 
Sbjct: 411 PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKY 456

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  116 bits (292), Expect = 7e-29
 Identities = 47/300 (15%), Positives = 97/300 (32%), Gaps = 47/300 (15%)

Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDD------------VREQAVW 179
           + + +  L  + S + ++   +   G +P+ ++LL     D             R +A  
Sbjct: 46  KDDMSRTLLAM-SSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASA 104

Query: 180 ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 239
           AL N+    P  +        L  LL Q   +                C        E  
Sbjct: 105 ALHNIIHSQPDDKRGRREIRVL-HLLEQIRAY-------------CETCWE----WQEAH 146

Query: 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR------ 293
            P +   +  + +  +  +  A   L  LS     +  A+ E G    + ELL+      
Sbjct: 147 EPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHR-HAMNELGGLQAIAELLQVDCEMY 205

Query: 294 -----HPSPSVLIPALRTVGNIVTGDDMQTQCII-NHQALPCLLDLLTQNYKKSIKKEAC 347
                H S ++   A   + N+  GD      +      +  L+  L    +  +++   
Sbjct: 206 GLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESED-LQQVIA 264

Query: 348 WTISNITAGNVNQIQ-AIIEAGIIGPLVNLLLNAEFE-IKKEAAWAISNATSGGSNEQIK 405
             + N++       +  + E G +  L+   L  + E   K    A+ N ++  +  +  
Sbjct: 265 SVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKAD 324

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  101 bits (254), Expect = 8e-24
 Identities = 47/215 (21%), Positives = 77/215 (35%), Gaps = 12/215 (5%)

Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
           + A+VA + S+  ++Q    +  R L           + + G V   +E           
Sbjct: 245 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL 304

Query: 133 FEAAWALTNIASGTSEN-TRVVIDHGAVPIFVRLLSSP----TDDVREQAVWALGNVAG- 186
                AL N+++  +EN   +    GA+   V  L+      T  + E     L NV+  
Sbjct: 305 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 364

Query: 187 --DSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP--QPLFEQTRPA 242
              +   R ++  N  L  LL        L+++ NA  TL N     P  Q        A
Sbjct: 365 IATNEDHRQILRENNCLQTLLQHLK-SHSLTIVSNACGTLWNLSARNPKDQEALWDMG-A 422

Query: 243 LPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ 277
           +  L+ LIHS    +   +  AL  L      K +
Sbjct: 423 VSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYK 457

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  189 bits (481), Expect = 1e-55
 Identities = 49/328 (14%), Positives = 99/328 (30%), Gaps = 32/328 (9%)

Query: 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVRE 175
           +P+ +++LS  D  + Q   A+ + +         + V   G +   V LL SP  +V++
Sbjct: 4   IPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 176 QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 235
            A  AL N+   S   +        +   ++         + +  T  L N         
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 236 FEQTRPALPALERLI----------------HSNDDEVLTDACWALSYLSDGTNDKIQAV 279
            E    ALP L   +                   D EV  +A   L  LS     +    
Sbjct: 123 -ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMR 181

Query: 280 IEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYK 339
             +G+   L+  +++   +           +    ++  +           L+   +N  
Sbjct: 182 NYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241

Query: 340 KSIKKEACWTISNITAGNVNQIQAI-------------IEAGIIGPLVNLLLNAEFEIKK 386
                  C++  +    N N    +               +  I   +NL+  ++ +   
Sbjct: 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATL 301

Query: 387 EAA-WAISNATSGGSNEQIKYKFFYVSR 413
           EA   A+ N T+               +
Sbjct: 302 EACAGALQNLTASKGLMSSGMSQLIGLK 329

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  119 bits (298), Expect = 8e-30
 Identities = 49/368 (13%), Positives = 110/368 (29%), Gaps = 38/368 (10%)

Query: 72  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
           ++P  V  + S D   Q       +     +      +V Q G + + ++ L   +   +
Sbjct: 3   TIPKAVQYLSSQDEKYQAIGAYYIQHT-CFQDESAKQQVYQLGGICKLVDLLRSPN-QNV 60

Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTD-DVREQAVWALGNVAGDSPK 190
           Q  AA AL N+   ++ N         +   V LL    + ++++Q    L N++     
Sbjct: 61  QQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL 120

Query: 191 CRDLV-------------LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP-QPLF 236
             +L+               +G          E     +  NAT  L N       +   
Sbjct: 121 KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTM 180

Query: 237 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS 296
                 + +L   + +       D     + +    N   +   E     R +E     +
Sbjct: 181 RNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYN-ARN 239

Query: 297 PSVLIPALRTVGNIVTGDDMQTQ---------------CIINHQALPCLLDLLTQNYKKS 341
                 +     N                          + +  A+   L+L+ ++ K +
Sbjct: 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDA 299

Query: 342 IKKEACWTISNITAGNVN-----QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 396
             +     + N+TA              ++   +  +  LL +   ++ +  A  +SN +
Sbjct: 300 TLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMS 359

Query: 397 SGGSNEQI 404
                 ++
Sbjct: 360 RHPLLHRV 367

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  115 bits (288), Expect = 2e-28
 Identities = 45/308 (14%), Positives = 92/308 (29%), Gaps = 28/308 (9%)

Query: 113 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDD 172
           SG              P++ F A   L N++S  +    +    G +   +  + +    
Sbjct: 141 SGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAA 200

Query: 173 VR------EQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA--------KLSMLR 218
            R      E  +  L N++                    A   + +           M  
Sbjct: 201 SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNN 260

Query: 219 NATWTLSNFCRG-KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK-- 275
           N    L       K       +      L  +  S  D  L     AL  L+        
Sbjct: 261 NYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320

Query: 276 ---IQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD 332
                  ++    P++  LL+  +  V+      + N+          ++ +Q  P +  
Sbjct: 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTR 378

Query: 333 LLTQNYKKSIKKE-----ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFE-IKK 386
           LLT +   +   E     AC+T+ N+ A      +    + ++  ++NL  ++      +
Sbjct: 379 LLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAE 438

Query: 387 EAAWAISN 394
            A   +S+
Sbjct: 439 AARLLLSD 446

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 90.7 bits (224), Expect = 5e-20
 Identities = 27/177 (15%), Positives = 63/177 (35%), Gaps = 18/177 (10%)

Query: 241 PALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVL 300
             +P   + + S D++      + + +         Q V + G   +LV+LLR P+ +V 
Sbjct: 2   LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQ 61

Query: 301 IPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ 360
             A   + N+V               +   + LL +     I+K+    + N+++ +   
Sbjct: 62  QAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL- 120

Query: 361 IQAIIEAGIIGPLVNLLL----------------NAEFEIKKEAAWAISNATSGGSN 401
            +  + A  +  L + ++                  + E+   A   + N +S  + 
Sbjct: 121 -KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAG 176

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 79.9 bits (196), Expect = 2e-16
 Identities = 32/224 (14%), Positives = 71/224 (31%), Gaps = 24/224 (10%)

Query: 199 GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP---QPLFEQTRPALPALERLIHSNDD 255
           G  +P   Q+             + + + C       Q +++     +  L  L+ S + 
Sbjct: 1   GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQL--GGICKLVDLLRSPNQ 58

Query: 256 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGD 314
            V   A  AL  L   +                V LLR   +  +       + N+ + D
Sbjct: 59  NVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD 118

Query: 315 DMQTQCIINHQALPCLLDLL---------------TQNYKKSIKKEACWTISNITAGNVN 359
           +++ +  +   ALP L D +                +     +   A   + N+++ +  
Sbjct: 119 ELKEE--LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAG 176

Query: 360 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ 403
           +      +G+I  L+  + N     + +   ++ N      N  
Sbjct: 177 RQTMRNYSGLIDSLMAYVQNCVAASRCDDK-SVENCMCVLHNLS 219

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  178 bits (453), Expect = 1e-50
 Identities = 59/362 (16%), Positives = 117/362 (32%), Gaps = 57/362 (15%)

Query: 98  LLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHG 157
           L S+ +  P     +   +P  I  L       ++  AA  L ++     +    V    
Sbjct: 32  LDSLRKGGPPPPNWRQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKLK 90

Query: 158 AVPIFVRLLSSPTDDVREQAVWALGNVA-GDSPKCRDLVLSNGALMPLLAQFNEHAKLSM 216
            +P+ V LL  P  +V   A  AL N++ G     +  + +   +  L+    +   + +
Sbjct: 91  GIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDL 150

Query: 217 LRNATWTLSNFCRGKPQPLFEQTRPALPALERLI------------------HSNDDEVL 258
               T TL N          E    AL AL   +                  H   + VL
Sbjct: 151 TEVITGTLWN-LSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVL 209

Query: 259 TDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRH----------------------- 294
           T+    L  +S   ++  + + E  G+   L+ +++                        
Sbjct: 210 TNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLS 269

Query: 295 --------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEA 346
                    +      A     N  T      + +   + +   + LL ++   +I + +
Sbjct: 270 YQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEAS 329

Query: 347 CWTISNITAGNVNQI----QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNE 402
              I N+ AG          A+ +   +  + +LL N    + K A+ A+ N      N+
Sbjct: 330 AGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNK 389

Query: 403 QI 404
           ++
Sbjct: 390 EL 391

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  103 bits (258), Expect = 4e-24
 Identities = 55/386 (14%), Positives = 111/386 (28%), Gaps = 68/386 (17%)

Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
           +P +V  +    + + L A    + +           +     VP  +  L +     L 
Sbjct: 92  IPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLT 151

Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP------------------TDDVR 174
                 L N++S   ++ ++ I   A+      +  P                   + V 
Sbjct: 152 EVITGTLWNLSS--HDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVL 209

Query: 175 EQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLS------MLRNATWTLSNFC 228
                 L NV+ +  + R  +     L+  L    +           ++ N    L N  
Sbjct: 210 TNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLS 269

Query: 229 R---------------------------GKPQPLFEQTRPALPALERLIHSNDDEVLTDA 261
                                        +   L  Q       +  L  S    +L  +
Sbjct: 270 YQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEAS 329

Query: 262 CWALSYLSDGT----NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ 317
             A+  L  G          A+ +      + +LL +    V+  A   + N+      +
Sbjct: 330 AGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDA--R 387

Query: 318 TQCIINHQALPCLLDLLT-------QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGII 370
            + +I   A+P L+  L         N+ +        TI+ + A N+   + + E   I
Sbjct: 388 NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGI 447

Query: 371 GPLVNLLLNAEFEIK--KEAAWAISN 394
             LV +  +     K  + AA  +  
Sbjct: 448 EKLVLINKSGNRSEKEVRAAALVLQT 473

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 93.9 bits (232), Expect = 7e-21
 Identities = 37/166 (22%), Positives = 72/166 (43%), Gaps = 4/166 (2%)

Query: 214 LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN 273
               R +  +L +  +G P P   + +P LP +  ++    D V ++A   L +L    +
Sbjct: 22  AQHERGSLASLDSLRKGGPPPPNWR-QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRND 80

Query: 274 DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQC-IINHQALPCLLD 332
                V +    P LV LL HP   V + A   + NI  G D   +  I N   +P L+ 
Sbjct: 81  KVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVR 140

Query: 333 LLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL 378
           LL +     + +    T+ N+++ +  +++ +  A  +  L + ++
Sbjct: 141 LLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHA--LHALTDEVI 184

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 80.0 bits (196), Expect = 2e-16
 Identities = 43/293 (14%), Positives = 83/293 (28%), Gaps = 65/293 (22%)

Query: 129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 188
           P  Q E     +  +               +P  + +L    D V+  A   L ++   +
Sbjct: 20  PLAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN 79

Query: 189 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER 248
            K +  V     +  L+                                           
Sbjct: 80  DKVKTDVRKLKGIPVLV------------------------------------------G 97

Query: 249 LIHSNDDEVLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVELLRH-PSPSVLIPALRT 306
           L+     EV   AC AL  +S G +   + A+      P LV LLR      +      T
Sbjct: 98  LLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGT 157

Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEA-----------------CWT 349
           + N+ + D ++    I   AL  L D +   +    ++                      
Sbjct: 158 LWNLSSHDSIKM--EIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGC 215

Query: 350 ISNITAGNVNQIQAIIEA-GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSN 401
           + N+++      + + E  G++  L+ ++       K   +  + N      N
Sbjct: 216 LRNVSSERSEARRKLRECDGLVDALIFIVQAE-IGQKDSDSKLVENCVCLLRN 267

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  168 bits (427), Expect = 2e-49
 Identities = 41/240 (17%), Positives = 82/240 (34%), Gaps = 7/240 (2%)

Query: 111 IQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDH-GAVPIFVRLLSSP 169
           + S  +P       +    Q +  A   L ++     +N        G   +  R L + 
Sbjct: 36  VLSQPMPPTAGEAEQAADQQEREGALELLADLCENM-DNAADFCQLSGMHLLVGRYLEAG 94

Query: 170 TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229
              +R +A   +G  + +    ++ VL  GAL  LL   +  A  ++   A + +S   R
Sbjct: 95  AAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVR 154

Query: 230 GKP--QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR 287
            +      F +       L R +     ++   + + L  L  G  +    +   G+  +
Sbjct: 155 EQEAGLLQFLRL-DGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 213

Query: 288 LVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEAC 347
           LV L+R          L  + ++VT      +     +    L +LL    +   + E  
Sbjct: 214 LVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECR--EPELGLEELLRHRCQLLQQHEEY 271

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  100 bits (249), Expect = 5e-24
 Identities = 24/165 (14%), Positives = 61/165 (36%)

Query: 239 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS 298
           ++P  P       + D +    A   L+ L +  ++       +G+   +   L   +  
Sbjct: 38  SQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAG 97

Query: 299 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 358
           +   A + +G          + ++   AL  LL LL ++   +++ +A + IS +     
Sbjct: 98  LRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQE 157

Query: 359 NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ 403
             +   +       L+  +     ++K ++A+ + N   G    +
Sbjct: 158 AGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHK 202

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 98.9 bits (246), Expect = 1e-23
 Identities = 22/154 (14%), Positives = 54/154 (35%), Gaps = 2/154 (1%)

Query: 242 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVL 300
               + R + +    +   A   +   S       + V+  G   +L+ LL      +V 
Sbjct: 83  MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVR 142

Query: 301 IPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ 360
           + AL  +  +V   +      +       L+  + Q   + +K ++ + + N+  G+   
Sbjct: 143 VKALFAISCLVREQEAGLLQFLRLDGFSVLMRAM-QQQVQKLKVKSAFLLQNLLVGHPEH 201

Query: 361 IQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN 394
              +   G++  LV L+        +    A+ +
Sbjct: 202 KGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCS 235

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 90.5 bits (224), Expect = 1e-20
 Identities = 24/181 (13%), Positives = 58/181 (32%), Gaps = 2/181 (1%)

Query: 82  SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTN 141
           +    ++  A            +    +V+  G + + +  L RD    ++ +A +A++ 
Sbjct: 93  AGAAGLRWRAAQLIGTCSQNV-AAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISC 151

Query: 142 IASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL 201
           +           +      + +R +      ++ ++ + L N+    P+ +  + S G +
Sbjct: 152 LVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMV 211

Query: 202 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDA 261
              L             +    L +     PQ + E   P L   E L H        + 
Sbjct: 212 -QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEE 270

Query: 262 C 262
            
Sbjct: 271 Y 271

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  154 bits (390), Expect = 3e-41
 Identities = 56/397 (14%), Positives = 120/397 (30%), Gaps = 42/397 (10%)

Query: 46  LKKRREGLQAHQPLTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSP 105
           L K          +         KL             D++I+  A       L+++   
Sbjct: 354 LCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLA-YLTLDAEC 412

Query: 106 PINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT------------------- 146
               +     +   ++     +     +       N+ +                     
Sbjct: 413 KEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQH 471

Query: 147 -------------SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD 193
                        ++   V+ + G       L  + + + +E     L  V G   + R 
Sbjct: 472 IPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRG 530

Query: 194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRP--ALPALERLI 250
            V+  G +  LL    E  +    R+AT  L+       P+  F   R    +  L  L+
Sbjct: 531 KVVQEGGVKALLRMALEGTEKGK-RHATQALARIGITINPEVSFSGQRSLDVIRPLLNLL 589

Query: 251 HSNDDEVLT-DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 309
             +   +   ++  AL+ L+       Q +I+     ++   L      +   A + + N
Sbjct: 590 QQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCN 649

Query: 310 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE-AG 368
           +V  +D+      N+  +  L  L  ++  +         ++ IT+ +V   + I+  A 
Sbjct: 650 LVMSEDVIKMFEGNNDRVKFLALLC-EDEDEETATACAGALAIITSVSVKCCEKILAIAS 708

Query: 369 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIK 405
            +  L  L+ N    ++      I N  + G     K
Sbjct: 709 WLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKK 745

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  143 bits (362), Expect = 2e-37
 Identities = 45/360 (12%), Positives = 103/360 (28%), Gaps = 47/360 (13%)

Query: 86  NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASG 145
           +    A+    ++                 +  +I+        + +     A+T + +G
Sbjct: 219 SSSTIASVCLARIYENMYYDEAKARFTD-QIDEYIKDKLLAPDMESKVRVTVAITALLNG 277

Query: 146 TSE-NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPL 204
             +   +VV   G + + + + ++  +  +  A   L   +         +   G  + +
Sbjct: 278 PLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKK-DKAKALCEQG--VDI 334

Query: 205 LAQFNEHAKLSMLRNATWTLSNFC-----RGKPQPLFEQTRPALPALER---LIHSNDDE 256
           L +        +   A   L             +P  +     L    R   +    D +
Sbjct: 335 LKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKD 394

Query: 257 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM 316
           +   A   L+YL+     K + + +      L++L R  + S L   + T  N+    + 
Sbjct: 395 IRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEK 454

Query: 317 QT--------------------------------QCIINHQALPCLLDLLTQNYKKSIKK 344
           Q                                   + N      L  L       S  +
Sbjct: 455 QEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNS--Q 512

Query: 345 EACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI 404
           E    + N   G       +++ G +  L+ + L    + K+ A  A++      + E  
Sbjct: 513 ELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVS 572

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  139 bits (350), Expect = 6e-36
 Identities = 64/425 (15%), Positives = 136/425 (32%), Gaps = 38/425 (8%)

Query: 1   MSLRPNARTE--VRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQA--- 55
           M +  ++ T   V  ++    +  +E + R  D + E  K+K     ++ +     A   
Sbjct: 214 MDITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITA 273

Query: 56  ----HQPLTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI 111
                  + N        L+ + AM     +DD   Q  A      L++        + +
Sbjct: 274 LLNGPLDVGNQVVAREGILQMILAMAT---TDDELQQRVAC---ECLIAASSKKDKAKAL 327

Query: 112 QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVID-HGAVPIFVRLL---- 166
               V          +   ++  A   L  + S   ++  +     GA            
Sbjct: 328 CEQGVDILKRLYHSKN-DGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFL 386

Query: 167 --SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTL 224
                  D+R  A   L  +  D  +C++ ++ + A +  L         S L     T 
Sbjct: 387 IKPGKDKDIRRWAADGLAYLTLD-AECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTF 445

Query: 225 SNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 284
            N C    +         L    +     + E+            D  N +I  +   G+
Sbjct: 446 VNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDV---------DFINKRITVLANEGI 496

Query: 285 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK 344
              L  L +  S +      R +  +    +++ + ++    +  LL +  +  +K  K+
Sbjct: 497 TTALCALAKTESHNSQELIARVLNAVCGLKELRGK-VVQEGGVKALLRMALEGTEK-GKR 554

Query: 345 EACWTISNITAGNVNQ--IQAIIEAGIIGPLVNLLLNAEFEIKK-EAAWAISNATSGGSN 401
            A   ++ I      +          +I PL+NLL      ++  E+  A++N  S   +
Sbjct: 555 HATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNES 614

Query: 402 EQIKY 406
            + + 
Sbjct: 615 VRQRI 619

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  131 bits (331), Expect = 2e-33
 Identities = 41/291 (14%), Positives = 79/291 (27%), Gaps = 5/291 (1%)

Query: 107 INEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLL 166
           I  +   G+       L++ +    Q   A  L  +  G  E    V+  G V   +R+ 
Sbjct: 488 ITVLANEGITTALCA-LAKTESHNSQELIARVLNAV-CGLKELRGKVVQEGGVKALLRMA 545

Query: 167 SSPTDDVREQAVWALGN--VAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTL 224
              T+  +  A  AL    +  +         S   + PLL    +         +   L
Sbjct: 546 LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMAL 605

Query: 225 SNFCRGKPQPLFEQTR-PALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAG 283
           +N             +   +  +E  +  +   +   A   L  L    +          
Sbjct: 606 TNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNND 665

Query: 284 VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIK 343
               L  L               +  I +      + I+   +   +L  L  N   +++
Sbjct: 666 RVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQ 725

Query: 344 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN 394
                 I N+        + + E  I+  L  L    +    K    A   
Sbjct: 726 HRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQC 776

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  116 bits (290), Expect = 3e-28
 Identities = 36/231 (15%), Positives = 68/231 (29%), Gaps = 6/231 (2%)

Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLL-SIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
           + A++          +  AT    ++  +I      +      V+   +  L +D     
Sbjct: 538 VKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALE 597

Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
            FE+  ALTN+AS      + +I    V      L      +   A   L N+   S   
Sbjct: 598 NFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM-SEDV 656

Query: 192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP---QPLFEQTRPALPALER 248
             +   N   +  LA   E             L+          + +       L  L  
Sbjct: 657 IKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIAS-WLDILHT 715

Query: 249 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 299
           LI +    V       +  + +   +  + + E  +   L  L + P  + 
Sbjct: 716 LIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTR 766

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 81.8 bits (201), Expect = 7e-17
 Identities = 30/210 (14%), Positives = 61/210 (29%), Gaps = 3/210 (1%)

Query: 82  SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTN 141
                   ++      L S+  S     +I+   V +   +L  +D   L   AA  L N
Sbjct: 592 DCTALENFESLMALTNLASMNESV-RQRIIKEQGVSKIEYYLM-EDHLYLTRAAAQCLCN 649

Query: 142 IASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL 201
           +            ++  V     L     ++       AL  +   S KC + +L+  + 
Sbjct: 650 LVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASW 709

Query: 202 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRP-ALPALERLIHSNDDEVLTD 260
           + +L     +   ++       + N      +   +      +  L  L    DD     
Sbjct: 710 LDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKA 769

Query: 261 ACWALSYLSDGTNDKIQAVIEAGVCPRLVE 290
              A   L+     +I    +    P +  
Sbjct: 770 REVATQCLAAAERYRIIERSDNAEIPDVFA 799

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score =  135 bits (341), Expect = 1e-37
 Identities = 38/214 (17%), Positives = 63/214 (29%), Gaps = 20/214 (9%)

Query: 116 VPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVR 174
           + R +  L  D   P     AA  + +     SE  + V     +   ++LL    +DV+
Sbjct: 10  LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69

Query: 175 EQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP 234
                AL N+  +    +  V     +  LL    +   L   +  T  L N        
Sbjct: 70  RAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK 129

Query: 235 LFEQTRPALPALERLI----------------HSNDDEVLTDACWALSYLSDGTNDKIQA 278
                  AL  L   I                   D ++  +    L  +S    D  +A
Sbjct: 130 N-LMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKA 188

Query: 279 VIEA-GVCPRLVELLRHPSPSVLIPALRTVGNIV 311
           +    G+   LV  +R           +   N V
Sbjct: 189 MRRCDGLIDSLVHYVRGTIADYQPDD-KATENCV 221

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 88.5 bits (219), Expect = 2e-20
 Identities = 27/179 (15%), Positives = 66/179 (36%), Gaps = 20/179 (11%)

Query: 241 PALPALERLIHSND--DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS 298
             L     ++ ++      ++ A   + +     ++  + V +     +L++LL+  +  
Sbjct: 8   MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNED 67

Query: 299 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 358
           V       + N+V  D+     +     +P LL +L Q      KK+    + N+++ + 
Sbjct: 68  VQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK 127

Query: 359 NQIQAIIEAGIIGPLVNLLL----------------NAEFEIKKEAAWAISNATSGGSN 401
            +   I EA  +  L   ++                  +F+I       + N +S G++
Sbjct: 128 LKNLMITEA--LLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGAD 184

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 72.7 bits (178), Expect = 8e-15
 Identities = 23/137 (16%), Positives = 53/137 (38%), Gaps = 9/137 (6%)

Query: 271 GTNDKIQAVIEAGVCPRLVELLR--HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALP 328
           G+N  ++  +      R V +L   H  PS +  A   + +         + +   + + 
Sbjct: 1   GSNADMEMTL-----ERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGIL 55

Query: 329 CLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAE-FEIKKE 387
            LL LL +   + +++  C  + N+   + +    + E   +  L+ +L      E KK+
Sbjct: 56  KLLQLL-KVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQ 114

Query: 388 AAWAISNATSGGSNEQI 404
               + N +S    + +
Sbjct: 115 ITGLLWNLSSNDKLKNL 131

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 39.9 bits (93), Expect = 7e-04
 Identities = 17/121 (14%), Positives = 34/121 (28%), Gaps = 19/121 (15%)

Query: 82  SDDRNIQLDATTQFRKLLSIER----------SPPINEVIQ--SGVVPRFIEFLSRDDFP 129
           + D   +   T     L S ++                +I   SG         +     
Sbjct: 106 TRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDF 165

Query: 130 QLQFEAAWALTNIASGTSENTRVVIDH-GAVPIFVRLLSSPTDDVR------EQAVWALG 182
            + +     L N++S  ++  + +    G +   V  +     D +      E  V  L 
Sbjct: 166 DIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILH 225

Query: 183 N 183
           N
Sbjct: 226 N 226

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 90.9 bits (225), Expect = 4e-21
 Identities = 44/262 (16%), Positives = 89/262 (33%), Gaps = 27/262 (10%)

Query: 50  REGLQAHQPLTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINE 109
           RE L   + L     +       L  ++  +  D   +  +A +    +          E
Sbjct: 11  REALANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKT------RE 64

Query: 110 VIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP 169
            +   ++ +    L + +   L  E A A   +A    E  + +I     P+        
Sbjct: 65  DLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMI-----PVLFANYRIG 119

Query: 170 TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229
            +  +    +AL  +A  +P     ++ +   M +L+  N   KL+ L      +     
Sbjct: 120 DEKTKINVSYALEEIAKANPMLMASIVRD--FMSMLSSKNREDKLTAL----NFIEAMGE 173

Query: 230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 289
              + +     P LP +  L+H  D+ V   A  AL +L+   +   + VI      + +
Sbjct: 174 NSFKYV----NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRL 223

Query: 290 ELLRHPSPSVLIPALRTVGNIV 311
           E L   S  V       +  ++
Sbjct: 224 EELNDTSSLVNKTVKEGISRLL 245

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 73.2 bits (179), Expect = 7e-15
 Identities = 32/201 (15%), Positives = 70/201 (34%), Gaps = 20/201 (9%)

Query: 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVR 174
           V+ + IE L  DD   +   A   +  IA    +    ++      +F  L  S    + 
Sbjct: 33  VLKKLIELLD-DDLWTVVKNAISIIMVIAKTREDLYEPMLK----KLFSLLKKSEAIPLT 87

Query: 175 EQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP 234
           ++   A G +A + P+         +++P+L             N ++ L    +  P  
Sbjct: 88  QEIAKAFGQMAKEKPELVK------SMIPVLFANYRIGDEKTKINVSYALEEIAKANP-- 139

Query: 235 LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH 294
                   +     ++ S + E    A   +  + + +   +   +     PR++ LL  
Sbjct: 140 --MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFL-----PRIINLLHD 192

Query: 295 PSPSVLIPALRTVGNIVTGDD 315
               V   A+  + ++ T +D
Sbjct: 193 GDEIVRASAVEALVHLATLND 213

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 67.1 bits (164), Expect = 9e-13
 Identities = 38/280 (13%), Positives = 73/280 (26%), Gaps = 56/280 (20%)

Query: 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVR 174
                   L  D     +  +A  L                  AV + +   S      R
Sbjct: 24  NDDELFRLL-DDHNSLKRISSARVLQLRG-----------GQDAVRLAIEFCSDKNYIRR 71

Query: 175 EQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP 234
           +   + LG +     KC D V +      L           +   A  + +  C+  P  
Sbjct: 72  DIGAFILGQI-KICKKCEDNVFN-----ILNNMALNDKSACVRATAIESTAQRCKKNPIY 125

Query: 235 LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH 294
             +     +   +         V     +A+S ++D               P L+ LL+ 
Sbjct: 126 SPK----IVEQSQITAFDKSTNVRRATAFAISVIND-----------KATIPLLINLLKD 170

Query: 295 PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT 354
           P+  V   A   +      +              C +++L     + ++ EA   +S   
Sbjct: 171 PNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKN-EEVRIEAIIGLSYRK 220

Query: 355 AGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN 394
              V           +  L + L      +  +   A   
Sbjct: 221 DKRV-----------LSVLCDELKKN--TVYDDIIEAAGE 247

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 49.8 bits (119), Expect = 5e-07
 Identities = 36/201 (17%), Positives = 62/201 (30%), Gaps = 45/201 (22%)

Query: 98  LLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHG 157
           + S  +    N +    +V +       D    ++   A+A++ I            D  
Sbjct: 112 IESTAQRCKKNPIYSPKIVEQSQITA-FDKSTNVRRATAFAISVIN-----------DKA 159

Query: 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSML 217
            +P+ + LL  P  DVR  A +A+     D+   RD        + +L   NE  +    
Sbjct: 160 TIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRD------CFVEMLQDKNEEVR---- 209

Query: 218 RNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ 277
             A   LS            + +  L  L   +    + V  D   A   L D       
Sbjct: 210 IEAIIGLSYR----------KDKRVLSVLCDEL--KKNTVYDDIIEAAGELGD------- 250

Query: 278 AVIEAGVCPRLVELLRHPSPS 298
                 + P L  +L     +
Sbjct: 251 ----KTLLPVLDTMLYKFDDN 267

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 24/266 (9%), Positives = 54/266 (20%), Gaps = 84/266 (31%)

Query: 134 EAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD 193
           +A+                           RLL       R  +   L            
Sbjct: 9   KASKEYGLYNQCKKL---------NDDELFRLLDDHNSLKRISSARVLQLR--------- 50

Query: 194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN 253
                                                         + A+          
Sbjct: 51  --------------------------------------------GGQDAVRLAIEFCSDK 66

Query: 254 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 313
           +        + L  +        +   +          L   S  V   A+ +       
Sbjct: 67  NYIRRDIGAFILGQIKIC-----KKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKK 121

Query: 314 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPL 373
           + + +      + +             ++++   + IS I            +   I  L
Sbjct: 122 NPIYSP-----KIVEQSQITAFDKST-NVRRATAFAISVIN-----------DKATIPLL 164

Query: 374 VNLLLNAEFEIKKEAAWAISNATSGG 399
           +NLL +   +++  AA+AI+      
Sbjct: 165 INLLKDPNGDVRNWAAFAININKYDN 190

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 63.2 bits (154), Expect = 1e-11
 Identities = 45/245 (18%), Positives = 78/245 (31%), Gaps = 57/245 (23%)

Query: 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVRE 175
           V  +I+ L  D    ++  AA+AL  I            D  AV   ++ L      VR 
Sbjct: 21  VEMYIKNLQDDS-YYVRRAAAYALGKIG-----------DERAVEPLIKALKDEDAWVRR 68

Query: 176 QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 235
            A  ALG +  +            A+ PL+    +     + ++A   L           
Sbjct: 69  AAADALGQIGDER-----------AVEPLIKAL-KDEDGWVRQSAAVALGQI-------- 108

Query: 236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP 295
                 A+  L + +   D  V   A +AL  + D      +AV        L++ L+  
Sbjct: 109 --GDERAVEPLIKALKDEDWFVRIAAAFALGEIGD-----ERAV------EPLIKALKDE 155

Query: 296 SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355
              V   A   +G I  G +         +    +  L  +      +K A   +    +
Sbjct: 156 DGWVRQSAADALGEI--GGE---------RVRAAMEKLA-ETGTGFARKVAVNYLETHKS 203

Query: 356 GNVNQ 360
            N + 
Sbjct: 204 FNHHH 208

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 59.7 bits (145), Expect = 1e-10
 Identities = 42/249 (16%), Positives = 79/249 (31%), Gaps = 56/249 (22%)

Query: 155 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKL 214
           D   V ++++ L   +  VR  A +ALG +  +            A+ PL+    +    
Sbjct: 17  DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDER-----------AVEPLIKAL-KDEDA 64

Query: 215 SMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND 274
            + R A   L                 A+  L + +   D  V   A  AL  + D    
Sbjct: 65  WVRRAAADALGQI----------GDERAVEPLIKALKDEDGWVRQSAAVALGQIGD---- 110

Query: 275 KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL 334
             +  +E      L++ L+     V I A   +G I  GD+         +A+  L+  L
Sbjct: 111 --ERAVEP-----LIKALKDEDWFVRIAAAFALGEI--GDE---------RAVEPLIKAL 152

Query: 335 TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN 394
            ++    +++ A   +  I               +   +  L        +K A   +  
Sbjct: 153 -KDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLET 200

Query: 395 ATSGGSNEQ 403
             S   +  
Sbjct: 201 HKSFNHHHH 209

>1qgk_B Protein (importin alpha-2 subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.50A {Homo sapiens} Length = 44

 Score = 57.1 bits (138), Expect = 3e-11
 Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 12 RRSKYK-VAVDAEEGRRRREDNMVEIRKNKREESLLKKRR 50
          R  ++K    D+ E RRRR +  VE+RK K+++ +LK+R 
Sbjct: 3  RLHRFKNKGKDSTEMRRRRIEVNVELRKAKKDDQMLKRRN 42

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 40/219 (18%), Positives = 70/219 (31%), Gaps = 56/219 (25%)

Query: 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVRE 175
           V  +I+ L +DD   ++  AA+AL  I            D  AV   ++ L      VR 
Sbjct: 16  VEMYIKNL-QDDSYYVRRAAAYALGKIG-----------DERAVEPLIKALKDEDAWVRR 63

Query: 176 QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 235
            A  ALG             + +   +  L +  +     + ++A   L           
Sbjct: 64  AAADALGQ------------IGDERAVEPLIKALKDEDGWVRQSAAVALGQI-------- 103

Query: 236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP 295
                 A+  L + +   D  V   A +AL  + D      +  +E      L++ L+  
Sbjct: 104 --GDERAVEPLIKALKDEDWFVRIAAAFALGEIGD------ERAVEP-----LIKALKDE 150

Query: 296 SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL 334
              V   A   +G I  G +         +    +  L 
Sbjct: 151 DGWVRQSAADALGEI--GGE---------RVRAAMEKLA 178

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 58.1 bits (141), Expect = 4e-10
 Identities = 41/235 (17%), Positives = 78/235 (33%), Gaps = 56/235 (23%)

Query: 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSML 217
            V ++++ L   +  VR  A +ALG +  +            A+ PL+    +     + 
Sbjct: 15  KVEMYIKNLQDDSYYVRRAAAYALGKIGDER-----------AVEPLIKAL-KDEDAWVR 62

Query: 218 RNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ 277
           R A   L                 A+  L + +   D  V   A  AL  + D      +
Sbjct: 63  RAAADALGQI----------GDERAVEPLIKALKDEDGWVRQSAAVALGQIGD------E 106

Query: 278 AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN 337
             +E      L++ L+     V I A   +G I  GD+         +A+  L+  L ++
Sbjct: 107 RAVEP-----LIKALKDEDWFVRIAAAFALGEI--GDE---------RAVEPLIKAL-KD 149

Query: 338 YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAI 392
               +++ A   +  I        + +  A     +  L        +K A   +
Sbjct: 150 EDGWVRQSAADALGEI------GGERVRAA-----MEKLAETGTGFARKVAVNYL 193

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 55.0 bits (133), Expect = 5e-09
 Identities = 32/219 (14%), Positives = 61/219 (27%), Gaps = 53/219 (24%)

Query: 71  ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSG---------------- 114
           E +   +  +  D   ++  A     K+       P+ + ++                  
Sbjct: 14  EKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIG 73

Query: 115 ---VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTD 171
               V   I+ L +D+   ++  AA AL  I            D  AV   ++ L     
Sbjct: 74  DERAVEPLIKAL-KDEDGWVRQSAAVALGQIG-----------DERAVEPLIKALKDEDW 121

Query: 172 DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231
            VR  A +ALG             + +   +  L +  +     + ++A   L       
Sbjct: 122 FVRIAAAFALGE------------IGDERAVEPLIKALKDEDGWVRQSAADALGEI---- 165

Query: 232 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD 270
                        A+E+L  +        A   L     
Sbjct: 166 ------GGERVRAAMEKLAETGTGFARKVAVNYLETHKS 198

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 45.8 bits (109), Expect = 7e-06
 Identities = 28/157 (17%), Positives = 54/157 (34%), Gaps = 34/157 (21%)

Query: 238 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP 297
               A+  L + +   D  V   A  AL  + D      +  +E      L++ L+    
Sbjct: 42  GDERAVEPLIKALKDEDAWVRRAAADALGQIGD------ERAVEP-----LIKALKDEDG 90

Query: 298 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 357
            V   A   +G I  GD+         +A+  L+  L       ++  A + +  I    
Sbjct: 91  WVRQSAAVALGQI--GDE---------RAVEPLIKALKDED-WFVRIAAAFALGEIGD-- 136

Query: 358 VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN 394
                       + PL+  L + +  +++ AA A+  
Sbjct: 137 ---------ERAVEPLIKALKDEDGWVRQSAADALGE 164

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 60.9 bits (146), Expect = 4e-10
 Identities = 40/324 (12%), Positives = 106/324 (32%), Gaps = 14/324 (4%)

Query: 70  LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERS-PPINEVIQSGVVPRFIEFLSRDDF 128
           +++L   +       R+I           L    S   +   +   +  R    +++ + 
Sbjct: 88  VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED 147

Query: 129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 188
             +Q EA   + ++ S       V      +   +  L+SP   VR++ + ALG++    
Sbjct: 148 VSVQLEALDIMADMLS-RQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLV--- 203

Query: 189 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER 248
             C ++V  +  +  LL++ +++  +S  R     ++   R     + E     +P + +
Sbjct: 204 MSCGNIVFVD-LIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVK 262

Query: 249 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 308
             + +DDE+      A          ++   +   +    ++ L +       P      
Sbjct: 263 FCNVDDDELREYCIQAFESFVRRCPKEVYPHVST-IINICLKYLTYD------PNYNYDD 315

Query: 309 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG 368
                + M      +             +    +++ A   +  +     +++       
Sbjct: 316 EDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAV-VSTRHEMLPEFYKT 374

Query: 369 IIGPLVNLLLNAEFEIKKEAAWAI 392
           +   L++     E  +K +   A 
Sbjct: 375 VSPALISRFKEREENVKADVFHAY 398

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 34/247 (13%), Positives = 80/247 (32%), Gaps = 25/247 (10%)

Query: 108  NEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS 167
             +   + V     +  +      ++  A  +L  +      + ++ +      + +   S
Sbjct: 811  PKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKS----VILEAFS 866

Query: 168  SPTDDVREQAVWALGNVA-GDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN 226
            SP+++V+  A +ALG+++ G+ P+    VL      P       H+   ++ +A+     
Sbjct: 867  SPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSAS----- 921

Query: 227  FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 286
                    L          L +     ++         L         K+  +    + P
Sbjct: 922  -----VVGLKPYVENIWALLLKHCECAEEGTRNVVAECLG--------KLTLIDPETLLP 968

Query: 287  RLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEA 346
            RL   L   S       +  V   ++ D  Q    +    +   L  L      ++++ A
Sbjct: 969  RLKGYLISGSSYARSSVVTAVKFTIS-DHPQPIDPLLKNCIGDFLKTLEDP-DLNVRRVA 1026

Query: 347  CWTISNI 353
              T ++ 
Sbjct: 1027 LVTFNSA 1033

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 58.5 bits (141), Expect = 2e-09
 Identities = 51/290 (17%), Positives = 100/290 (34%), Gaps = 18/290 (6%)

Query: 105 PPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR 164
           P ++  +++ +   F   L  DD P ++  AA  L   A     +    +    +P+F  
Sbjct: 155 PRVSSAVKAELRQYFRN-LCSDDTPMVRRAAASKLGEFAKVLELDN---VKSEIIPMFSN 210

Query: 165 LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTL 224
           L S   D VR  AV A  N+A    +          +MP L Q  E     +        
Sbjct: 211 LASDEQDSVRLLAVEACVNIA----QLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKF 266

Query: 225 SNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAG 283
           +   +     + +     +PA + L+   + EV   A   +    +  + D  + VI + 
Sbjct: 267 TELQKAVGPEITKTD--LVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQ 324

Query: 284 VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIK 343
           + P + EL+   +  V       +  +          +     +  LL L     K    
Sbjct: 325 ILPCIKELVSDANQHVKSALASVIMGLS-------PILGKDNTIEHLLPLFLAQLKDECP 377

Query: 344 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAIS 393
           +     ISN+   N       +   ++  +V L  +A++ ++      + 
Sbjct: 378 EVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMP 427

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 48.9 bits (116), Expect = 2e-06
 Identities = 27/227 (11%), Positives = 74/227 (32%), Gaps = 17/227 (7%)

Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
           LP  +A +  +   ++L+  +    +  +     +++ +    +P  +E    D   +++
Sbjct: 365 LPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSL----LPAIVELAE-DAKWRVR 419

Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
                 +  +A           D     + +  L      +RE A   L  +     K  
Sbjct: 420 LAIIEYMPLLAGQLGVE---FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW 476

Query: 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS 252
               ++  ++P +   +            + ++       Q +  +    LP + R+   
Sbjct: 477 ----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKH--MLPTVLRMAGD 530

Query: 253 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 299
               V  +   +L  +    ++     +++ V P L +L +     V
Sbjct: 531 PVANVRFNVAKSLQKIGPILDNS---TLQSEVKPILEKLTQDQDVDV 574

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 44.2 bits (104), Expect = 5e-05
 Identities = 34/236 (14%), Positives = 69/236 (29%), Gaps = 18/236 (7%)

Query: 159 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLR 218
           + + +  L +    +R  ++  L  +A        +  +   L+P L          +L 
Sbjct: 12  IAVLIDELRNEDVQLRLNSIKKLSTIA----LALGVERTRSELLPFLTDTIYDED-EVLL 66

Query: 219 NATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA 278
                L  F      P +      LP LE L    +  V   A  +L  +S   +     
Sbjct: 67  ALAEQLGTFTTLVGGPEYVH--CLLPPLESLATVEETVVRDKAVESLRAISHEHSPSD-- 122

Query: 279 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY 338
            +EA   P +  L      +    A               +  +         +L   + 
Sbjct: 123 -LEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAEL----RQYFRNLC-SDD 176

Query: 339 KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN 394
              +++ A   +              +++ II    NL  + +  ++  A  A  N
Sbjct: 177 TPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDEQDSVRLLAVEACVN 229

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.2 bits (137), Expect = 6e-09
 Identities = 61/409 (14%), Positives = 106/409 (25%), Gaps = 134/409 (32%)

Query: 2   SLRPN-------ARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKN-KREESLLKKRREGL 53
            LR N        +TE R+      +  E+  R   DN V  + N  R +    K R+ L
Sbjct: 86  VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ-PYLKLRQAL 144

Query: 54  QAHQP----------------LTNSAALDNKKLESLPAMVAGVW-------SDD------ 84
              +P                +     L  K    +   +   W       S +      
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF--WLNLKNCNSPETVLEML 202

Query: 85  RNIQLDATTQFRKLLSIERSPPIN-EVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIA 143
           + +       +        +  +    IQ+         L    +          L    
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQA----ELRRLLKSKPYEN-------CL---- 247

Query: 144 SGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGA--- 200
                   +V+                 +V+    W   N+      C+ L+ +      
Sbjct: 248 --------LVL----------------LNVQNAKAWNAFNL-----SCKILLTTRFKQVT 278

Query: 201 ------------LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER 248
                       L             S+L             +PQ L  +     P    
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC-------RPQDLPREVLTTNPRRLS 331

Query: 249 LI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV---CPRLVELLRH--------PS 296
           +I  S  D + T   W          DK+  +IE+ +    P      R         P 
Sbjct: 332 IIAESIRDGLAT---W--DNWKHVNCDKLTTIIESSLNVLEP---AEYRKMFDRLSVFP- 382

Query: 297 PSVLIPA--LRTV-GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSI 342
           PS  IP   L  +  +++  D M    ++N      L++   +    SI
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMV---VVNKLHKYSLVEKQPKESTISI 428

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.8 bits (136), Expect = 9e-09
 Identities = 50/302 (16%), Positives = 103/302 (34%), Gaps = 81/302 (26%)

Query: 65  LDNKKLESLPAMVAGVWS----DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFI 120
            D K ++ +P     + S    D   +  DA +   +L     S          +V +F+
Sbjct: 33  FDCKDVQDMPK---SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE------MVQKFV 83

Query: 121 EFLSRDDFPQLQFEAAWALTNIAS---GTSENTRVVID-----HGAVPIFVRLLSSPTDD 172
           E + R ++        + ++ I +     S  TR+ I+     +    +F         +
Sbjct: 84  EEVLRINYK-------FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF------AKYN 130

Query: 173 V-REQAVWALGNVA-GDSPKCRDLVLSNGALMP------LLAQ--FNEHAKLSMLRNATW 222
           V R Q    L        P  +++++ +G  +       +      +   +  M     W
Sbjct: 131 VSRLQPYLKLRQALLELRPA-KNVLI-DG--VLGSGKTWVALDVCLSYKVQCKMDFKIFW 186

Query: 223 -TLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE 281
             L N C   P+ + E        L++L++  D           +  SD +   I+  I 
Sbjct: 187 LNLKN-CN-SPETVLEM-------LQKLLYQIDPN--------WTSRSDHS-SNIKLRIH 228

Query: 282 AGVCPRLVELLRHPS-PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKK 340
           + +   L  LL+     + L+        ++   ++Q     N   L C + L T+   K
Sbjct: 229 S-IQAELRRLLKSKPYENCLL--------VL--LNVQNAKAWNAFNLSCKILLTTRF--K 275

Query: 341 SI 342
            +
Sbjct: 276 QV 277

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963

 Score = 55.2 bits (132), Expect = 2e-08
 Identities = 34/179 (18%), Positives = 61/179 (34%), Gaps = 29/179 (16%)

Query: 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVRE 175
               I  +   D   L++  A+ +    +GT  N+ V        +    +S   DDVR 
Sbjct: 543 ADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVK------RLLHVAVSDSNDDVRR 596

Query: 176 QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 235
            AV ALG V                +  ++   ++     +     + L   C GK    
Sbjct: 597 AAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ- 646

Query: 236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH 294
                 A+  L+ L     D V   A  ALS +     +K        + P++ ++ ++
Sbjct: 647 -----SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEK--------LNPQVADINKN 692

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 54.8 bits (131), Expect = 3e-08
 Identities = 41/304 (13%), Positives = 87/304 (28%), Gaps = 23/304 (7%)

Query: 107 INEVIQSGVVPRFIEFLSR---DDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFV 163
           +  V +  ++P  +  L          ++      L  IA G  +     +    +P  +
Sbjct: 348 LANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPE-LIPHLI 406

Query: 164 RLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWT 223
           + LS     VR    W L   A               +  LL +  +  K  +   A   
Sbjct: 407 QCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNK-RVQEAACSA 465

Query: 224 LSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEA 282
            +         L       L  L         + L     A+  L+D   +   +     
Sbjct: 466 FATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQ 525

Query: 283 GVCPRLVELLR--HPSPSVLIPALRTVGNIVTG---------DDMQTQCI------INHQ 325
            + P L++           L P L  + ++ T          + +  +C+      +   
Sbjct: 526 MLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQA 585

Query: 326 ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIK 385
            L        +   K     A   +S +  G    I+ ++    I  L+   +  +    
Sbjct: 586 MLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEV 645

Query: 386 KEAA 389
           ++++
Sbjct: 646 RQSS 649

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 53.7 bits (128), Expect = 8e-08
 Identities = 52/319 (16%), Positives = 107/319 (33%), Gaps = 44/319 (13%)

Query: 107 INEVIQSGVVPRFIEFLS---RDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFV 163
             +   + ++   +EF+      D  + +  A  A  +I  G  +  R    H A+P  +
Sbjct: 358 FAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSIL 417

Query: 164 RLLSSPTDDVREQAVWALGNVAGD-SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATW 222
            L++  +  V+E   W +G +A   +          G +   L    +H K++   N +W
Sbjct: 418 NLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVA--TNCSW 475

Query: 223 TLSNFCRGKPQPLFEQTRPALPA-LERLIHS-----NDDEVLTDACWALSYLSDGTNDKI 276
           T+ N      +          PA ++ LI +     N+      A  AL+ + +   D +
Sbjct: 476 TIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTV 535

Query: 277 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCL------ 330
                + +   +++         L   +    N +T +D Q+   +    L  L      
Sbjct: 536 AETSAS-ISTFVMD--------KLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRK 586

Query: 331 ----------------LDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLV 374
                             LL +     I+ +  + IS + A      +  +E      L+
Sbjct: 587 SPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLET-FSPYLL 645

Query: 375 NLLLNAEFEIKKEAAWAIS 393
             L   +  +   A   I+
Sbjct: 646 KALNQVDSPVSITAVGFIA 664

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 44/297 (14%), Positives = 93/297 (31%), Gaps = 23/297 (7%)

Query: 120 IEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGA---VPIFVRLLSSPTD-DVRE 175
           ++    +    ++  +  AL  +       ++ ++       + I     S+ T   VR 
Sbjct: 140 VDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRL 199

Query: 176 QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 235
            A+ AL +         +       LM ++ +  +   + +   A   L          +
Sbjct: 200 AALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFM 259

Query: 236 FEQTRPALPALE-RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH 294
                 AL AL    + S +D+V +      S + +   D    + +    P        
Sbjct: 260 KPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFAL 319

Query: 295 PSPSVLIPALR---TVGNIVTGDDMQTQCIINHQAL------------PCLLDLLTQNYK 339
            S   ++P L    T  N    DD     +     L              +L+ + QN  
Sbjct: 320 SSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNIT 379

Query: 340 KS---IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAIS 393
                 ++ A     +I  G     +       +  ++NL+ +   ++K+  AW I 
Sbjct: 380 ADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIG 436

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651

 Score = 52.4 bits (125), Expect = 1e-07
 Identities = 49/349 (14%), Positives = 104/349 (29%), Gaps = 42/349 (12%)

Query: 95  FRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI 154
              L+ + ++   +  I    +      +S D+  +++  +     ++ S  +E    + 
Sbjct: 62  MEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEI--FIK 119

Query: 155 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP-KCRDLVLSNGALMPLLAQFNEHAK 213
               V + + LL      VR   V  L ++      + + ++L +   +  L      ++
Sbjct: 120 QQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSR 179

Query: 214 LSMLRNATWTLSNFCRGKP--QPL--FEQTRPALPALERLIH----SNDDEVLTDACWAL 265
             +  +    L    R     Q +  FE    A   L  +I     S+   V+ D    L
Sbjct: 180 EVIRNDGVLLLQALTRSNGAIQKIVAFEN---AFERLLDIITEEGNSDGGIVVEDCLILL 236

Query: 266 SYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV---------------LIPALRTVGNI 310
             L    N       E     R+         +                L+  L +  N 
Sbjct: 237 QNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNP 296

Query: 311 VTGDDMQTQCIINHQALPCLLDL-LTQNYKKSIKKEACWTISNITAGN-VNQIQ-AIIEA 367
                   + +     L  L  + +       I  E   T+S +  G  VNQ   A + A
Sbjct: 297 PGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNA 356

Query: 368 GIIGPLVNLLLN--------AEFEIKKEAAWAISNATSGGSNEQIKYKF 408
               P   +++           F ++    +          N++ + + 
Sbjct: 357 PSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYK--NQKGQGEI 403

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 20/150 (13%), Positives = 41/150 (27%), Gaps = 35/150 (23%)

Query: 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVRE 175
           +      +  D+   ++ + + AL+ +               A    +  LS+    +R 
Sbjct: 14  LVPRGSHM-ADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRG 60

Query: 176 QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 235
            A W +GN              +   +  L +  E     +   A  +L           
Sbjct: 61  AAAWIIGN------------FQDERAVEPLIKLLEDDSGFVRSGAARSLEQI-------- 100

Query: 236 FEQTRPALPALERLIHSNDDEVLTDACWAL 265
                    A+E+L  +        A   L
Sbjct: 101 --GGERVRAAMEKLAETGTGFARKVAVNYL 128

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 22/142 (15%), Positives = 41/142 (28%), Gaps = 34/142 (23%)

Query: 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSML 217
            +      ++     VR     AL              + + A  PLL     +    + 
Sbjct: 13  GLVPRGSHMADENKWVRRDVSTALSR------------MGDEAFEPLLESL-SNEDWRIR 59

Query: 218 RNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ 277
             A W + NF          Q   A+  L +L+  +   V + A  +L  +        +
Sbjct: 60  GAAAWIIGNF----------QDERAVEPLIKLLEDDSGFVRSGAARSLEQIGG------E 103

Query: 278 AVIEAGVCPRLVELLRHPSPSV 299
            V  A     + +L    +   
Sbjct: 104 RVRAA-----MEKLAETGTGFA 120

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 12/78 (15%)

Query: 111 IQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPT 170
           +        +E L  ++  +++  AAW + N             D  AV   ++LL   +
Sbjct: 39  MGDEAFEPLLESL-SNEDWRIRGAAAWIIGNFQ-----------DERAVEPLIKLLEDDS 86

Query: 171 DDVREQAVWALGNVAGDS 188
             VR  A  +L  + G+ 
Sbjct: 87  GFVRSGAARSLEQIGGER 104

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 12/68 (17%)

Query: 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVR 174
            V   I+ L  DD   ++  AA +L  I                     +L  + T   R
Sbjct: 74  AVEPLIKLL-EDDSGFVRSGAARSLEQIG-----------GERVRAAMEKLAETGTGFAR 121

Query: 175 EQAVWALG 182
           + AV  L 
Sbjct: 122 KVAVNYLE 129

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 25/153 (16%), Positives = 47/153 (30%), Gaps = 35/153 (22%)

Query: 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 299
              L      +   +  V  D   ALS + D      +A         L+E L +    +
Sbjct: 11  SSGLVPRGSHMADENKWVRRDVSTALSRMGD------EAF------EPLLESLSNEDWRI 58

Query: 300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 359
              A   +GN    D+         +A+  L+ LL ++    ++  A  ++  I  G   
Sbjct: 59  RGAAAWIIGNF--QDE---------RAVEPLIKLL-EDDSGFVRSGAARSLEQI--GG-- 102

Query: 360 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAI 392
                    +   +  L        +K A   +
Sbjct: 103 -------ERVRAAMEKLAETGTGFARKVAVNYL 128

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 49.4 bits (117), Expect = 2e-06
 Identities = 42/284 (14%), Positives = 94/284 (33%), Gaps = 27/284 (9%)

Query: 107 INEVIQSGVVPRFIEFLSRD-DFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRL 165
           I+E +++ +   +++ L R  +   +Q  +A  L    S T      +       IF+  
Sbjct: 285 IDETMRTYITENYLQLLERSLNVEDVQIYSALVLVKTWSFTKLTCINLKQL--SEIFINA 342

Query: 166 LSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLR-NATWTL 224
           +S       E +V AL  ++      + ++ SN +   +L    +  K++         +
Sbjct: 343 ISRRIVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIM 401

Query: 225 SNFCRGKPQPLFEQTRPALPALERLI-----HSNDDEVLTDACWALSYLSDGTNDKIQAV 279
           +N      +                           E             D      + +
Sbjct: 402 ANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKE--------DILLFNEKYI 453

Query: 280 IEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT--QN 337
           +   +   L   + + SP+     +R + NI    +   Q +    A+  +L+ L   Q+
Sbjct: 454 LRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQ-LAQQGAVKIILEYLANKQD 512

Query: 338 YKKSIKKEACWTISNITA----GNVNQIQAIIEAGIIGPLVNLL 377
             + I+   C  ++ +      G + +  + + A  I  L  LL
Sbjct: 513 IGEPIRILGCRALTRMLIFTNPGLIFKKYSALNA--IPFLFELL 554

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 47.9 bits (113), Expect = 5e-06
 Identities = 43/264 (16%), Positives = 80/264 (30%), Gaps = 64/264 (24%)

Query: 146 TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLL 205
              N + ++    +    R + + + + ++Q V  + N+          +   GA+  +L
Sbjct: 446 LLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIIL 504

Query: 206 AQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWAL 265
                      L N                         AL R++   +  ++       
Sbjct: 505 ---------EYLANKQDIGE-----------PIRILGCRALTRMLIFTNPGLIF------ 538

Query: 266 SYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQ 325
                     + A+      P L ELL   +P    P           +D Q +   N++
Sbjct: 539 -----KKYSALNAI------PFLFELLPRSTPVDDNPLH---------NDEQIKLTDNYE 578

Query: 326 ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIK 385
           AL  L +L +     S  +E C  I             +        + NL+L+    ++
Sbjct: 579 ALLALTNLASSE--TSDGEEVCKHI-------------VSTKVYWSTIENLMLDENVPLQ 623

Query: 386 KEAAWAISNATSGGSNEQIKYKFF 409
           +     ISN  S      I  KFF
Sbjct: 624 RSTLELISNMMS--HPLTIAAKFF 645

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Length = 265

 Score = 46.0 bits (108), Expect = 8e-06
 Identities = 45/243 (18%), Positives = 81/243 (33%), Gaps = 17/243 (6%)

Query: 38  KNKREESLLKKRREGLQAHQPLTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRK 97
            N   ++ L++     Q      + A  D + L  +  +      DD   +L A     +
Sbjct: 4   NNPISKTELRELVLSWQILD-AVSLALEDKRALFLILELAG---EDDETTRLRAFVALGE 59

Query: 98  LLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHG 157
           +L    S     V++   +  FI  LS+++  ++  +A  AL  +       ++  +   
Sbjct: 60  ILKRADSDLRMMVLER-HLDVFINALSQEN-EKVTIKALRALGYLVKDVPMGSKTFLK-- 115

Query: 158 AVPIFVRLLSSPTDDVREQAVWALG--NVAGDSPKCRDLVLSNGALMPLLAQ------FN 209
           A    V LL SP D +R + +  L       DS   R  +        L  +      F 
Sbjct: 116 AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKLVRTYINELVVSPDLYTKVAGFCLFL 175

Query: 210 EHAKLSMLRNATWTLSNFCRGKPQPLFEQTR-PALPALERLIHSNDDEVLTDACWALSYL 268
                S        + +      Q   E     AL  LE+ +     E +      +S +
Sbjct: 176 NMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRI 235

Query: 269 SDG 271
            DG
Sbjct: 236 VDG 238

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Length = 265

 Score = 41.7 bits (97), Expect = 2e-04
 Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 2/102 (1%)

Query: 234 PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR 293
            L  + + AL  +  L   +D+     A  AL  +    +  ++ ++        +  L 
Sbjct: 26  SLALEDKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALS 85

Query: 294 HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT 335
             +  V I ALR +G +V    M ++  +  +A   L+ LL 
Sbjct: 86  QENEKVTIKALRALGYLVKDVPMGSKTFL--KAAKTLVSLLE 125

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876

 Score = 46.4 bits (109), Expect = 1e-05
 Identities = 49/337 (14%), Positives = 104/337 (30%), Gaps = 17/337 (5%)

Query: 17  KVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKKLESLPAM 76
           +VA+   E      D  +++     E +   +  E             L     ++L   
Sbjct: 274 EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQ 333

Query: 77  VAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAA 136
                 DD N    A      L +      +  V+       FI+   ++   + +  A 
Sbjct: 334 DENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLP------FIKEHIKNPDWRYRDAAV 387

Query: 137 WALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVL 196
            A   I  G   +    +   A+P  + L+  P+  VR+ A W +G +        +  +
Sbjct: 388 MAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL---LPEAAI 444

Query: 197 SNGALMPLLAQFNEH--AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSND 254
           ++  L PLL    E   A+  +  N  W  S+      +   +            + S+ 
Sbjct: 445 NDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEA-ADVADDQEEPATYCLSSSF 503

Query: 255 DEVLTDACWALSYLSDGTNDKIQAVIEA-----GVCPRLVELLRHPSPSVLIPALRTVGN 309
           + ++              N+   +  E+         +        +  V++  L+ V  
Sbjct: 504 ELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQ 563

Query: 310 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEA 346
           + +     +  I  +     L   L    +K   ++A
Sbjct: 564 MESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDA 600

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	415
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.98
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.97
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.97
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.97
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.97
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.97
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.97
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.94
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.94
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.93
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.92
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.91
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.89
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.89
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.87
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.8
3grl_A	651	General vesicular transport factor P115; vesicle t	99.76
3grl_A	651	General vesicular transport factor P115; vesicle t	99.76
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.75
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.75
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.73
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.67
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.67
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.65
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.62
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.61
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.61
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.6
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.6
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.6
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.57
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.57
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.57
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.56
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.55
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.52
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.52
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.47
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.43
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.37
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	99.31
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.26
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	99.24
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.14
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	99.13
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.09
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	99.0
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.99
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.94
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.9
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.89
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.86
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.83
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.8
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.8
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.8
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.79
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.69
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	98.68
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.68
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.58
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	98.36
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.34
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.25
2x1g_F	971	Cadmus; transport protein, developmental protein,	98.25
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.16
2x1g_F	971	Cadmus; transport protein, developmental protein,	98.14
2x19_B	963	Importin-13; nuclear transport, protein transport;	98.1
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	98.08
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	98.03
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.02
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.01
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.93
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	97.88
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.87
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	97.83
2x19_B	963	Importin-13; nuclear transport, protein transport;	97.6
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.59
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.5
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	97.48
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	97.46
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.32
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	97.22
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	96.93
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	96.87
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	96.79
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	96.68
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	96.62
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	96.55
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	96.53
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	96.48
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	96.46
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	96.39
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	96.28
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	95.9
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	95.77
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	95.64
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	95.52
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	95.1
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	95.03
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	94.91
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	94.69
2p8q_B	40	Snurportin-1; heat repeat, IBB-domain, importin, k	94.58
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	94.41
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	94.15
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	93.93
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	93.77
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	93.64
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	93.2
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	92.46
3fga_B	403	Serine/threonine-protein phosphatase 2A 56 kDa RE	90.35
2npp_B	449	PP2A, B subunit, serine/threonine-protein phosphat	89.26
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	88.9
3fga_B	403	Serine/threonine-protein phosphatase 2A 56 kDa RE	88.34
2npp_B	449	PP2A, B subunit, serine/threonine-protein phosphat	85.37
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	83.24
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	82.57
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	82.28
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	80.75
2b6c_A	220	Hypothetical protein EF3068; structural genomis, D	80.27

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=3.7e-62  Score=475.34  Aligned_cols=411  Identities=47%  Similarity=0.761  Sum_probs=333.3

Q ss_pred             CCCCCCC-ccHHHhhhccC-CCCchHHHHhHHHHHHHHHHHhhhHHHHhhhhccccCCCC-CCchh--hhhhhhhccHHH
Q 014945            1 MSLRPNA-RTEVRRSKYKV-AVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQP-LTNSA--ALDNKKLESLPA   75 (415)
Q Consensus         1 ~~~~~~~-~~~~~~~~~k~-~~~~~~~r~~r~~~~~~lRk~~r~~~~~~~R~~~~~~~~~-~~~~~--~~~~~~~~~i~~   75 (415)
                      ||-+++. .+++|+++||+ |+|++|+||||+++.++|||+||||.+.|||++....++. ++...  .........++.
T Consensus         1 ~~~~~~~~~~~~r~~~~k~~~~~~~e~r~~R~~~~v~lRk~kr~e~l~krR~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   80 (529)
T 3tpo_A            1 MSTNENANLPAARLNRFKNKGKDSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSVED   80 (529)
T ss_dssp             -------------------------------------------CCSCSCCCCCC---------------CGGGSSCCHHH
T ss_pred             CCCCCCCCCcHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCcccccChhhhccchhhhHHHHHHH
Confidence            6666665 67899999997 9999999999999999999999999999999875433221 22111  111111246899


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHh
Q 014945           76 MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVID  155 (415)
Q Consensus        76 l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~  155 (415)
                      +++.++++|++.+..|+..++++++.+.+++++.+++.|++|.|+++|+..+++.++..|+|+|+|++.++++.+..+++
T Consensus        81 lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~  160 (529)
T 3tpo_A           81 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD  160 (529)
T ss_dssp             HHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999999999999998889999999999999999999987666899999999999999999999999999


Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccch----hHhHHHHHHHHHHHhhhCC
Q 014945          156 HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA----KLSMLRNATWTLSNFCRGK  231 (415)
Q Consensus       156 ~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~----~~~~~~~a~~~l~~l~~~~  231 (415)
                      .|++|.|+.+|.++++.+++.|+|+|+||+.+++.+++.+.+.|++++|+.++....    ...+.+.++|++++++.+.
T Consensus       161 ~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~  240 (529)
T 3tpo_A          161 GGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK  240 (529)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred             CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999999995332    3457899999999999987


Q ss_pred             -CCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHh
Q 014945          232 -PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI  310 (415)
Q Consensus       232 -~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl  310 (415)
                       +........+++|.|+.++.+++++++..++|+|++++.+.++..+.+.+.|+++.|+.+|.++++.++.+++++|+|+
T Consensus       241 ~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl  320 (529)
T 3tpo_A          241 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI  320 (529)
T ss_dssp             TTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred             cchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHH
Confidence             6666777789999999999999999999999999999999998888899999999999999999999999999999999


Q ss_pred             hcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHH
Q 014945          311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAW  390 (415)
Q Consensus       311 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~  390 (415)
                      +.+++.....+++.|+++.|..++.++ ++.++++|+|+|+|++.+++++...+++.|+++.|+.++.+++++++++|+|
T Consensus       321 ~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~  399 (529)
T 3tpo_A          321 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAW  399 (529)
T ss_dssp             TTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHH
T ss_pred             HccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHH
Confidence            999999999999999999999999998 9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHhhCCC
Q 014945          391 AISNATSGGSNEQIKYKFFYVSRTC  415 (415)
Q Consensus       391 aL~nl~~~~~~~~~~~l~~~~~~g~  415 (415)
                      +|+|++.+++.+++.+|   ++.|+
T Consensus       400 aL~nl~~~~~~~~~~~l---~~~g~  421 (529)
T 3tpo_A          400 AITNYTSGGTVEQIVYL---VHCGI  421 (529)
T ss_dssp             HHHHHHHHSCHHHHHHH---HHTTC
T ss_pred             HHHHHHcCCCHHHHHHH---HHCcC
Confidence            99999999999999999   89886

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=1.8e-56  Score=436.62  Aligned_cols=412  Identities=86%  Similarity=1.294  Sum_probs=330.2

Q ss_pred             CCCCCCCccHHHhhhccCCCCchHHHHhHHHHHHHHHHHhhhHHHHhhhhccccCCCC-CCchhhhhhhhhccHHHHHHh
Q 014945            1 MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQP-LTNSAALDNKKLESLPAMVAG   79 (415)
Q Consensus         1 ~~~~~~~~~~~~~~~~k~~~~~~~~r~~r~~~~~~lRk~~r~~~~~~~R~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~~   79 (415)
                      |+++.+.+++.|+++||++++++|+|+||+++.++|||+||+|.+.|||++....+.. ++.......+....++.+++.
T Consensus         3 ~~~~~~~~~~~~~~~~k~~~~~~~~r~~r~~~~~~lrk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~   82 (528)
T 4b8j_A            3 MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVPASAATGVDKKLESLPAMIGG   82 (528)
T ss_dssp             ------------------------CCCCC-----------------CCCC----------------------CHHHHHHH
T ss_pred             CCCCCCCChHHHHHhhcccCChHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCcccccccccccchhhhHHHHHHHHHH
Confidence            8888888999999999999999999999999999999999999999999974322221 110111112233579999999


Q ss_pred             hcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCCh
Q 014945           80 VWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAV  159 (415)
Q Consensus        80 l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i  159 (415)
                      |.++++..+..|++.|+++++...+++...+++.|++|.|+++|.+++++.++..|+|+|++++.++++.+..+++.|++
T Consensus        83 L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i  162 (528)
T 4b8j_A           83 VYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAV  162 (528)
T ss_dssp             HTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHH
T ss_pred             HcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcH
Confidence            99999999999999999999877557888999999999999999987658999999999999999989999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhh
Q 014945          160 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT  239 (415)
Q Consensus       160 ~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~  239 (415)
                      +.|+.+|.++++.+++.|+|+|+||+.+++.+++.+...|++++|+.++..+.+..++..++|+|.+|+...+.......
T Consensus       163 ~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~  242 (528)
T 4b8j_A          163 PIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT  242 (528)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHH
Confidence            99999999999999999999999999999989999999999999999996677899999999999999998777777778


Q ss_pred             hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHH
Q 014945          240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ  319 (415)
Q Consensus       240 ~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~  319 (415)
                      .+++|.|+.+|.++++.++..++|+|++++.+.+...+.+++.|+++.|+.+|.++++.++..|+++|+|++.+.+...+
T Consensus       243 ~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~  322 (528)
T 4b8j_A          243 RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQ  322 (528)
T ss_dssp             TTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHH
Confidence            99999999999999999999999999999999888888899999999999999999999999999999999999999999


Q ss_pred             HHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Q 014945          320 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG  399 (415)
Q Consensus       320 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~  399 (415)
                      .+++.|+++.|+.+|.++.++.+++.|+|+|+|++.++++++..+++.|+++.|+.+|.+++++++..|+|+|+|++..+
T Consensus       323 ~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~  402 (528)
T 4b8j_A          323 CIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGG  402 (528)
T ss_dssp             HHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCC
Confidence            99999999999999987657899999999999999999999999999999999999999999999999999999999988


Q ss_pred             CHHHHHHHHHHhhCCC
Q 014945          400 SNEQIKYKFFYVSRTC  415 (415)
Q Consensus       400 ~~~~~~~l~~~~~~g~  415 (415)
                      ++++..++   ++.|+
T Consensus       403 ~~~~~~~l---~~~~~  415 (528)
T 4b8j_A          403 SHDQIKYL---VSEGC  415 (528)
T ss_dssp             CHHHHHHH---HHTTC
T ss_pred             CHHHHHHH---HHCCC
Confidence            89999999   77774

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=2.2e-52  Score=407.75  Aligned_cols=403  Identities=55%  Similarity=0.827  Sum_probs=349.6

Q ss_pred             ccHHHhhhccC-C-CCchHHHHhHHHHHHHHHHHhhhHHHHhhhhcccc---CCCCCCch-----hhhhh-hhhccHHHH
Q 014945            8 RTEVRRSKYKV-A-VDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQ---AHQPLTNS-----AALDN-KKLESLPAM   76 (415)
Q Consensus         8 ~~~~~~~~~k~-~-~~~~~~r~~r~~~~~~lRk~~r~~~~~~~R~~~~~---~~~~~~~~-----~~~~~-~~~~~i~~l   76 (415)
                      +++.|++.||+ | ++++|+|+||+++.++|||+||++.+.|||++...   ....++.+     ..... ...+.++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~rk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l   92 (530)
T 1wa5_B           13 VPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQM   92 (530)
T ss_dssp             CCGGGCC-----------CCCCCTTSSCCCCSCCCCCSCCSCCCCC----------------------------CCHHHH
T ss_pred             chHHHHHHHhccCCCChHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCccccccccCCchhhhhhhhhhhhhhhHHHHHHH
Confidence            56789999999 8 99999999999999999999999999999997542   11111100     00000 122579999


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhC
Q 014945           77 VAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDH  156 (415)
Q Consensus        77 ~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~  156 (415)
                      ++.|+++++..+..|+..|+++++....++...+++.|++|.|+++|.+++++.++..|+|+|++++.++++.+..+++.
T Consensus        93 v~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~  172 (530)
T 1wa5_B           93 TQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDA  172 (530)
T ss_dssp             HHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHC
Confidence            99999999999999999999998875567778889999999999999997339999999999999999888899999999


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC-CCCc
Q 014945          157 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPL  235 (415)
Q Consensus       157 g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~  235 (415)
                      |+++.|+.+|.++++.+++.|+|+|++|+.+.+..++.+...|+++.|+.++ .+.+..++..++|+|.+|+.+. +...
T Consensus       173 g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~  251 (530)
T 1wa5_B          173 DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKPQPD  251 (530)
T ss_dssp             TCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHhCCCCCCCc
Confidence            9999999999999999999999999999999888999999999999999999 5588899999999999999887 6666


Q ss_pred             hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh
Q 014945          236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD  315 (415)
Q Consensus       236 ~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~  315 (415)
                      .....+++|.|+.++.++++.++..++|+|++++...++..+.+++.|+++.|+.+|.++++.++..|+++|++++.+.+
T Consensus       252 ~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~  331 (530)
T 1wa5_B          252 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND  331 (530)
T ss_dssp             HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCH
Confidence            77778999999999999999999999999999999888878888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHH
Q 014945          316 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA  395 (415)
Q Consensus       316 ~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl  395 (415)
                      ...+.+++.|+++.|+.+|.++ ++.+++.|+|+|+|++.+++++++.+++.|+++.|+.+|.+++++++..|+|+|+|+
T Consensus       332 ~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l  410 (530)
T 1wa5_B          332 LQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNA  410 (530)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            8888899999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCH--HHHHHHHHHhhCCC
Q 014945          396 TSGGSN--EQIKYKFFYVSRTC  415 (415)
Q Consensus       396 ~~~~~~--~~~~~l~~~~~~g~  415 (415)
                      +..+++  +++.++   ++.|+
T Consensus       411 ~~~~~~~~~~~~~l---~~~~~  429 (530)
T 1wa5_B          411 SSGGLQRPDIIRYL---VSQGC  429 (530)
T ss_dssp             HHHTTTCTHHHHHH---HHTTC
T ss_pred             HhcCCCcHHHHHHH---HHCCC
Confidence            988776  888888   77664

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=1.5e-50  Score=391.39  Aligned_cols=381  Identities=47%  Similarity=0.771  Sum_probs=321.8

Q ss_pred             HHHHHHHHHhhhHHHHhhhhccccCCCCCCchhhhhhhh-hccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhH
Q 014945           31 DNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKK-LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINE  109 (415)
Q Consensus        31 ~~~~~lRk~~r~~~~~~~R~~~~~~~~~~~~~~~~~~~~-~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~  109 (415)
                      .-.++.|+++++......++...+..+.+..+....+.. -..++.+++.++|+|++.|..|+..+|+++|.+++++++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~   95 (510)
T 3ul1_B           16 SGMLETAAALFERNHMDSPDLGTDDDDLAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDN   95 (510)
T ss_dssp             -------------------------------------CCSSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred             cccHHHHHHHHHhhccCCccccCCccccchhhhccccchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHH
Confidence            344566666666666665554443332211111111111 1268999999999999999999999999999988999999


Q ss_pred             HHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCc
Q 014945          110 VIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP  189 (415)
Q Consensus       110 ~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~  189 (415)
                      +++.|++|.|+++|++.+++.+|..|+|+|+||++++++++..+++.|++|.|+.+|.++++.++++|+|+|+||+.+++
T Consensus        96 ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~  175 (510)
T 3ul1_B           96 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGS  175 (510)
T ss_dssp             HHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH
Confidence            99999999999999876658999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHhcCChHHHHHHhccch----hHhHHHHHHHHHHHhhhCC-CCCchhhhhchHHHHHHhhcCCChhHHHHHHHH
Q 014945          190 KCRDLVLSNGALMPLLAQFNEHA----KLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWA  264 (415)
Q Consensus       190 ~~~~~~~~~g~i~~L~~~l~~~~----~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~  264 (415)
                      .+++.+.+.|++++|+.++....    ...+.+.++|++++++.+. +........+++|.|+.++.+++++++..++|+
T Consensus       176 ~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~a  255 (510)
T 3ul1_B          176 AFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWA  255 (510)
T ss_dssp             HHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             HHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHH
Confidence            99999999999999999995332    3457899999999999987 566667778999999999999999999999999


Q ss_pred             HHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHH
Q 014945          265 LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK  344 (415)
Q Consensus       265 l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~  344 (415)
                      |++++....+..+.+.+.|+++.|+.+|.+++..++.+++++|+|++.+++..+..+++.|+++.|..++.++ ++.+++
T Consensus       256 L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v~~  334 (510)
T 3ul1_B          256 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQK  334 (510)
T ss_dssp             HHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHHHH
T ss_pred             HHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHHHHH
Confidence            9999999988888899999999999999999999999999999999999999999999999999999999998 999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhCCC
Q 014945          345 EACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYKFFYVSRTC  415 (415)
Q Consensus       345 ~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~~g~  415 (415)
                      .|+|+|+|++.++++++..+++.|+++.|+.++.+++++++++|+|+|+|++.+++.+++.+|   ++.|+
T Consensus       335 ~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L---~~~g~  402 (510)
T 3ul1_B          335 EATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYL---VHCGI  402 (510)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHH---HHTTC
T ss_pred             HHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHH---HHCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999   89886

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=1.1e-39  Score=311.97  Aligned_cols=339  Identities=62%  Similarity=0.968  Sum_probs=311.7

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhc-CchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945           73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQS-GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (415)
Q Consensus        73 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  151 (415)
                      ++.+++.++++++..+..|+..|+++++...+++.+.+++. |++|.|+++|++++++.++..|+++|++++.++++...
T Consensus        22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~  101 (450)
T 2jdq_A           22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR  101 (450)
T ss_dssp             CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            78999999999999999999999999875446667778887 99999999999983399999999999999998888888


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC
Q 014945          152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK  231 (415)
Q Consensus       152 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~  231 (415)
                      .+++.|+++.|+.+|.++++.+++.|+|+|++++.+.+..++.+.+.|+++.|+.++..+.+..++..++|+|.+++...
T Consensus       102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~  181 (450)
T 2jdq_A          102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK  181 (450)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred             HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence            88999999999999999999999999999999999998899999999999999999954578999999999999999876


Q ss_pred             -CCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHh
Q 014945          232 -PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI  310 (415)
Q Consensus       232 -~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl  310 (415)
                       +........+++|.|+.++.++|+.++..++|++.+++...++....+.+.|+++.|+.+|.++++.++..|+++|+++
T Consensus       182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l  261 (450)
T 2jdq_A          182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI  261 (450)
T ss_dssp             SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence             5555566689999999999999999999999999999998877778888899999999999999999999999999999


Q ss_pred             hcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHH
Q 014945          311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAW  390 (415)
Q Consensus       311 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~  390 (415)
                      +.+.+...+.+++.|+++.|+.++.++ ++.++..|+|+|+|++.++++..+.+++.|+++.|+.++.+++++++..|+|
T Consensus       262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~  340 (450)
T 2jdq_A          262 VTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAW  340 (450)
T ss_dssp             TTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             hhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence            999988888889999999999999998 9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHhhCCC
Q 014945          391 AISNATSGGSNEQIKYKFFYVSRTC  415 (415)
Q Consensus       391 aL~nl~~~~~~~~~~~l~~~~~~g~  415 (415)
                      +|+|++.+++++++.++   ++.|+
T Consensus       341 ~L~~l~~~~~~~~~~~l---~~~~~  362 (450)
T 2jdq_A          341 AITNATSGGSAEQIKYL---VELGC  362 (450)
T ss_dssp             HHHHHHHHCCHHHHHHH---HHHTC
T ss_pred             HHHHHHcCCCHHHHHHH---HHCCC
Confidence            99999988788888887   66553

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=3.2e-39  Score=313.99  Aligned_cols=323  Identities=28%  Similarity=0.441  Sum_probs=293.4

Q ss_pred             ccHHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchh
Q 014945           71 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  149 (415)
Q Consensus        71 ~~i~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  149 (415)
                      |.+|.|+++|.+ +++.++..|+++|.++++.. ......+++.|++|.|+.+|.+++ ++++..|+|+|+||+.++++.
T Consensus       119 G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~-~~~~~~vv~~Gaip~Lv~LL~s~~-~~v~e~A~~aL~nLa~~~~~~  196 (529)
T 3tpo_A          119 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGAGSAF  196 (529)
T ss_dssp             THHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhccCHHH
Confidence            789999999974 56899999999999998764 566678999999999999999999 999999999999999998999


Q ss_pred             hHHHHhCCChHHHHHhhCCCC-----HHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHH
Q 014945          150 TRVVIDHGAVPIFVRLLSSPT-----DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTL  224 (415)
Q Consensus       150 ~~~~~~~g~i~~L~~ll~~~~-----~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l  224 (415)
                      +..+.+.|+++.|+.+|..++     ..+...++|++.+++.+...........|+++.|+.++ .+.++.++..++|+|
T Consensus       197 r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~a~~aL  275 (529)
T 3tpo_A          197 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAI  275 (529)
T ss_dssp             HHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHT-TSSCHHHHHHHHHHH
T ss_pred             HHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHh-cCCcHHHHHHHHHHH
Confidence            999999999999999998643     45788999999999987655555555667899999999 788889999999999


Q ss_pred             HHhhhCCCCC-chhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHH
Q 014945          225 SNFCRGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPA  303 (415)
Q Consensus       225 ~~l~~~~~~~-~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a  303 (415)
                      ++++.+.+.. ......+++|.|+.+|.+++..++..+++++++++.+++.....+++.|+++.|+.+|.++++.++..|
T Consensus       276 ~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a  355 (529)
T 3tpo_A          276 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA  355 (529)
T ss_dssp             HHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHH
T ss_pred             HHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHH
Confidence            9999875322 233447899999999999999999999999999999999888889999999999999999999999999


Q ss_pred             HHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHhccCCH
Q 014945          304 LRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEF  382 (415)
Q Consensus       304 ~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~i~~L~~~l~~~~~  382 (415)
                      +|+|+|++.+++.+...+++.|++|.|+.++.++ +..++++|+|+|+|++. ++++++..+++.|+++.|+++|.++|+
T Consensus       356 ~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~  434 (529)
T 3tpo_A          356 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT  434 (529)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCH
T ss_pred             HHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCH
Confidence            9999999999999999999999999999999999 99999999999999997 688999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhC
Q 014945          383 EIKKEAAWAISNATS  397 (415)
Q Consensus       383 ~v~~~a~~aL~nl~~  397 (415)
                      +++..++++|.|+..
T Consensus       435 ~i~~~~L~aL~nil~  449 (529)
T 3tpo_A          435 KIIQVILDAISNIFQ  449 (529)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999999974

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=2e-39  Score=313.56  Aligned_cols=323  Identities=28%  Similarity=0.444  Sum_probs=292.9

Q ss_pred             ccHHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchh
Q 014945           71 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  149 (415)
Q Consensus        71 ~~i~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  149 (415)
                      |.+|.|+++|++ +++.+|..|+++|.++++.+ .+....+++.|++|.|+.+|++++ ++++..|+|+|+||+.++++.
T Consensus       100 G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~-~e~~~~vv~~GaIp~Lv~lL~s~~-~~v~e~A~~aL~nLa~d~~~~  177 (510)
T 3ul1_B          100 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAF  177 (510)
T ss_dssp             THHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHH
Confidence            789999999985 56899999999999998765 667788999999999999999998 999999999999999998999


Q ss_pred             hHHHHhCCChHHHHHhhCCCC-----HHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHH
Q 014945          150 TRVVIDHGAVPIFVRLLSSPT-----DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTL  224 (415)
Q Consensus       150 ~~~~~~~g~i~~L~~ll~~~~-----~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l  224 (415)
                      +..+.+.|+++.|+.++.+++     ..+...++|++.|++.+...........|+++.|+.++ .+.+..++..++|+|
T Consensus       178 r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~A~~aL  256 (510)
T 3ul1_B          178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAI  256 (510)
T ss_dssp             HHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHH
T ss_pred             HHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHH-hcCCHHHHHHHHHHH
Confidence            999999999999999998754     45788999999999987654555555567899999999 788889999999999


Q ss_pred             HHhhhCCCCC-chhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHH
Q 014945          225 SNFCRGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPA  303 (415)
Q Consensus       225 ~~l~~~~~~~-~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a  303 (415)
                      .+|+...+.. ......+++|.|+.+|.+++..++..+++++++++.+++.....+++.|+++.|+.+|.+++..++..|
T Consensus       257 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A  336 (510)
T 3ul1_B          257 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA  336 (510)
T ss_dssp             HHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHH
T ss_pred             HHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHH
Confidence            9999875322 233447899999999999999999999999999999999888899999999999999999999999999


Q ss_pred             HHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHhccCCH
Q 014945          304 LRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEF  382 (415)
Q Consensus       304 ~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~i~~L~~~l~~~~~  382 (415)
                      +|+|+|++.+++.+...+++.|+++.|+.++.++ +..++++|+|+|+|++. ++++++..+++.|+++.|+++|.++|+
T Consensus       337 ~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~  415 (510)
T 3ul1_B          337 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT  415 (510)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCH
T ss_pred             HHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCH
Confidence            9999999999999999999999999999999999 99999999999999997 688999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhC
Q 014945          383 EIKKEAAWAISNATS  397 (415)
Q Consensus       383 ~v~~~a~~aL~nl~~  397 (415)
                      +++..++++|.|+..
T Consensus       416 ~i~~~~L~aL~nil~  430 (510)
T 3ul1_B          416 KIIQVILDAISNIFQ  430 (510)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999999974

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=5.6e-40  Score=324.33  Aligned_cols=332  Identities=15%  Similarity=0.150  Sum_probs=288.4

Q ss_pred             HHHHHHhhcCC--CHHHHHHHHHHHHHHhccCCCCchhHHH-hcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCch-
Q 014945           73 LPAMVAGVWSD--DRNIQLDATTQFRKLLSIERSPPINEVI-QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE-  148 (415)
Q Consensus        73 i~~l~~~l~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~-  148 (415)
                      ++.++++|.++  |++.+..|++.|.++...  .+....++ +.|++|.|+++|++++ +.+++.|+|+|+||+.++++ 
T Consensus       379 v~~l~~lL~~~~~d~~v~~~AveaLayLS~~--~~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~d~q  455 (810)
T 3now_A          379 AEACRRFLIKPGKDKDIRRWAADGLAYLTLD--AECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYEKQ  455 (810)
T ss_dssp             HHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS--HHHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCSCCC
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC--cHHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCchhh
Confidence            57788888887  899999999999999542  34444455 6899999999999988 89999999999999986531 


Q ss_pred             ----------------------------hh---HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHh
Q 014945          149 ----------------------------NT---RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS  197 (415)
Q Consensus       149 ----------------------------~~---~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~  197 (415)
                                                  .+   +.+++.|++|.|+.++.++++.++++|+|+|+||+.+. .+|..+++
T Consensus       456 ~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~-~~r~~Vv~  534 (810)
T 3now_A          456 EMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLK-ELRGKVVQ  534 (810)
T ss_dssp             CCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSH-HHHHHHHH
T ss_pred             hhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHHHHHH
Confidence                                        12   67889999999999999999999999999999999764 58999999


Q ss_pred             cCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC-CCCch--hhhhchHHHHHHhhcCCC-hhHHHHHHHHHHHhccCCh
Q 014945          198 NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLF--EQTRPALPALERLIHSND-DEVLTDACWALSYLSDGTN  273 (415)
Q Consensus       198 ~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~~--~~~~~~l~~l~~lL~~~d-~~v~~~a~~~l~~l~~~~~  273 (415)
                      .|++++|+.+| .+.+...++.|+|+|++++.+. +...+  ....+++|.|+.+|.+++ ...+.+|+|+|.||+..++
T Consensus       535 ~Gaip~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d  613 (810)
T 3now_A          535 EGGVKALLRMA-LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNE  613 (810)
T ss_dssp             TTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH
T ss_pred             CCCHHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCH
Confidence            99999999999 6667788999999999999764 22211  123578999999998663 3455789999999999988


Q ss_pred             HHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHH-CCChHHHHHHhcCCCccchHHHHHHHHHH
Q 014945          274 DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN-HQALPCLLDLLTQNYKKSIKKEACWTISN  352 (415)
Q Consensus       274 ~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~~v~~~a~~~l~n  352 (415)
                      +..+.+++.|+++.|+.+|.++++.++.+|+++|+|++.+++... .+.+ .|.++.|+.++.++ +..+++.|+|+|+|
T Consensus       614 ~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~-~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALan  691 (810)
T 3now_A          614 SVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIK-MFEGNNDRVKFLALLCEDE-DEETATACAGALAI  691 (810)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHH-HHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHH-HHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence            888889999999999999999999999999999999999776444 4554 69999999999998 99999999999999


Q ss_pred             HhcCCHHHHHHHHH-cCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhCCC
Q 014945          353 ITAGNVNQIQAIIE-AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYKFFYVSRTC  415 (415)
Q Consensus       353 l~~~~~~~~~~l~~-~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~~g~  415 (415)
                      ++.+++.+++.+++ .|+++.|+.++.++++++++.|+|+|.|++.+ +.++..++   ++.|+
T Consensus       692 Lt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l---~e~G~  751 (810)
T 3now_A          692 ITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKL---FETDI  751 (810)
T ss_dssp             HHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHH---HTSTH
T ss_pred             HhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHH---HHCCC
Confidence            99988999999998 89999999999999999999999999999985 67888999   88884

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=3.4e-39  Score=302.48  Aligned_cols=335  Identities=19%  Similarity=0.183  Sum_probs=267.0

Q ss_pred             hhccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCch-hHHHhcCchHHHHHhhcCCCC-----------hHHHHHHH
Q 014945           69 KLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPI-NEVIQSGVVPRFIEFLSRDDF-----------PQLQFEAA  136 (415)
Q Consensus        69 ~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~-~~~~~~g~i~~L~~ll~~~~~-----------~~i~~~a~  136 (415)
                      +++.++.++..+.++|+..      .++.+++.+.+++. ..+++.|++|.|+++|+..+.           ++++..|+
T Consensus        30 ~~~~~~~l~~~~~~~~~~~------~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~  103 (458)
T 3nmz_A           30 KVEMVYSLLSMLGTHDKDD------MSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARAS  103 (458)
T ss_dssp             ---------------CCHH------HHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHH
T ss_pred             hHHHHHHHHHHhcCCCHHH------HHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHH
Confidence            4467889999999888762      44444444444555 678899999999999997542           69999999


Q ss_pred             HHHHHHhCCCchhhHHHHhCCCh----------HHHHHhhCCCC--HH-----HHH-------HHHHHHHHhcCCCchhH
Q 014945          137 WALTNIASGTSENTRVVIDHGAV----------PIFVRLLSSPT--DD-----VRE-------QAVWALGNVAGDSPKCR  192 (415)
Q Consensus       137 ~~L~~l~~~~~~~~~~~~~~g~i----------~~L~~ll~~~~--~~-----v~~-------~a~~~L~nl~~~~~~~~  192 (415)
                      |+|+||+.++++.+....+.|++          +.+++++.+..  .+     +++       +|+|+|+|++.+ +.+|
T Consensus       104 ~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R  182 (458)
T 3nmz_A          104 AALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHR  182 (458)
T ss_dssp             HHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHH
T ss_pred             HHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHHH
Confidence            99999999999999998888888          77777787642  12     444       999999999776 7799


Q ss_pred             HHHHhcCChHHHHHHhcc----------chhHhHHHHHHHHHHHhhhCCCCCchhh--hhchHHHHHHhhcCCChhHHHH
Q 014945          193 DLVLSNGALMPLLAQFNE----------HAKLSMLRNATWTLSNFCRGKPQPLFEQ--TRPALPALERLIHSNDDEVLTD  260 (415)
Q Consensus       193 ~~~~~~g~i~~L~~~l~~----------~~~~~~~~~a~~~l~~l~~~~~~~~~~~--~~~~l~~l~~lL~~~d~~v~~~  260 (415)
                      +.+.+.|++++|+.+|..          ..++.++++|+|+|.||+.+++......  ..+++|.|+.+|.+++++++..
T Consensus       183 ~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~  262 (458)
T 3nmz_A          183 HAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQV  262 (458)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHH
Confidence            999999999999999942          2467899999999999998764333222  3567999999999999999999


Q ss_pred             HHHHHHHhccC-ChHHHHHHHHcCcHHHHHHhc-CCCChhhHHHHHHHHHHhhcCChHHHHHHH-HCCChHHHHHHhcCC
Q 014945          261 ACWALSYLSDG-TNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGDDMQTQCII-NHQALPCLLDLLTQN  337 (415)
Q Consensus       261 a~~~l~~l~~~-~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~-~~~~l~~L~~ll~~~  337 (415)
                      ++|+|.+|+.. ++.....+.+.|+++.|+.+| .+.++.++..++.+|+||+.+.++....+. ..|+++.|+.+|.++
T Consensus       263 A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~  342 (458)
T 3nmz_A          263 IASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYR  342 (458)
T ss_dssp             HHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCC
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCC
Confidence            99999999985 566778889999999999975 567889999999999999996655555565 789999999999887


Q ss_pred             Ccc----chHHHHHHHHHHHhc---CCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014945          338 YKK----SIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYKFFY  410 (415)
Q Consensus       338 ~~~----~v~~~a~~~l~nl~~---~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~  410 (415)
                       ++    .+++.|+|+|.|++.   +++++++.+++.|+++.|+.+|.+++.+++++|+|+|.|++.. ++++..++   
T Consensus       343 -~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i---  417 (458)
T 3nmz_A          343 -SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEAL---  417 (458)
T ss_dssp             -CSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHH---
T ss_pred             -CCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHHHH---
Confidence             44    499999999999997   7899999999999999999999999999999999999999975 67888888   


Q ss_pred             hhCCC
Q 014945          411 VSRTC  415 (415)
Q Consensus       411 ~~~g~  415 (415)
                      ++.|+
T Consensus       418 ~~~G~  422 (458)
T 3nmz_A          418 WDMGA  422 (458)
T ss_dssp             HHHTH
T ss_pred             HHCCC
Confidence            78774

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=1.4e-37  Score=291.69  Aligned_cols=326  Identities=17%  Similarity=0.186  Sum_probs=276.6

Q ss_pred             hccHHHHHHhhcCC------------CHHHHHHHHHHHHHHhccCCCCchhHHHhcCch----------HHHHHhhcCCC
Q 014945           70 LESLPAMVAGVWSD------------DRNIQLDATTQFRKLLSIERSPPINEVIQSGVV----------PRFIEFLSRDD  127 (415)
Q Consensus        70 ~~~i~~l~~~l~~~------------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i----------~~L~~ll~~~~  127 (415)
                      -|.+|.|+++|+..            +++.+..|+++|.++++++ ++..+...+.|++          +.+++++.+..
T Consensus        69 ~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  147 (458)
T 3nmz_A           69 SGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQ-PDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHE  147 (458)
T ss_dssp             HTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHS-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred             CCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccC-cchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhc
Confidence            38999999999963            3799999999999999987 6666777777777          77778887652


Q ss_pred             -ChH-----HHH-------HHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHHHH
Q 014945          128 -FPQ-----LQF-------EAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-----------PTDDVREQAVWALGN  183 (415)
Q Consensus       128 -~~~-----i~~-------~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-----------~~~~v~~~a~~~L~n  183 (415)
                       ..+     ++.       +|+|+|.|++.+ ++++..+++.|+++.|+.+|..           .++.++..|+|+|.|
T Consensus       148 ~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~n  226 (458)
T 3nmz_A          148 PGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTN  226 (458)
T ss_dssp             SSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred             cccccccCCccchhhHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHH
Confidence             112     333       999999999875 9999999999999999999941           346789999999999


Q ss_pred             hcCCCchhHHHHHh-cCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC-C-CCchhhhhchHHHHHHhh-cCCChhHHH
Q 014945          184 VAGDSPKCRDLVLS-NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-P-QPLFEQTRPALPALERLI-HSNDDEVLT  259 (415)
Q Consensus       184 l~~~~~~~~~~~~~-~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~-~-~~~~~~~~~~l~~l~~lL-~~~d~~v~~  259 (415)
                      |+.+++..+..+.. .|+++.|+.+| .+.+.+++..++|+|.||+... + ........|++|.|+.+| .+.++.++.
T Consensus       227 La~~~~~~k~~i~~~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~  305 (458)
T 3nmz_A          227 LTFGDVANKATLCSMKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLK  305 (458)
T ss_dssp             HHTTCHHHHHHHHHCHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHH
T ss_pred             HhCCCcccHHHHHHcCCcHHHHHHHH-hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHH
Confidence            99988777767654 45699999999 6788999999999999999752 2 223334478999999975 567899999


Q ss_pred             HHHHHHHHhccCChHHHHHHH-HcCcHHHHHHhcCCCCh----hhHHHHHHHHHHhhc---CChHHHHHHHHCCChHHHH
Q 014945          260 DACWALSYLSDGTNDKIQAVI-EAGVCPRLVELLRHPSP----SVLIPALRTVGNIVT---GDDMQTQCIINHQALPCLL  331 (415)
Q Consensus       260 ~a~~~l~~l~~~~~~~~~~~~-~~~~i~~L~~lL~~~~~----~v~~~a~~~l~nl~~---~~~~~~~~~~~~~~l~~L~  331 (415)
                      .++.+|.+|+...++....+. ..|+++.|+.+|.+.+.    .++..|+++|.|++.   ++++.++.+.+.|+++.|+
T Consensus       306 ~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv  385 (458)
T 3nmz_A          306 SVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLL  385 (458)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHH
Confidence            999999999985544444455 78999999999987654    489999999999997   7888999999999999999


Q ss_pred             HHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Q 014945          332 DLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG  399 (415)
Q Consensus       332 ~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~  399 (415)
                      .+|.++ +..++++|+|+|+|++.++++++..+++.|+++.|++++.++++++++.|+|+|.|++.+.
T Consensus       386 ~LL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          386 QHLKSH-SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             HHSSCS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred             HHHcCC-ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            999998 9999999999999999889999999999999999999999999999999999999999875

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=1.7e-36  Score=289.78  Aligned_cols=325  Identities=27%  Similarity=0.379  Sum_probs=290.0

Q ss_pred             ccHHHHHHhhcCC-CHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchh
Q 014945           71 ESLPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  149 (415)
Q Consensus        71 ~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  149 (415)
                      +.++.+++.|+++ ++.++..|+++|.++.... .+....+++.|++|.|++++++++ +.++..|+++|++++.++++.
T Consensus        64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~~~  141 (450)
T 2jdq_A           64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGN-SLQTRIVIQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDSTMC  141 (450)
T ss_dssp             THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCHHH
Confidence            5689999999988 8999999999999998653 455566788999999999999988 999999999999999988889


Q ss_pred             hHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCC-chhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHh
Q 014945          150 TRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF  227 (415)
Q Consensus       150 ~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l  227 (415)
                      +..+++.|+++.|+.++.+ ++..++..++|+|++++.+. +.....+ ..++++.|+.++ .+.+..++..++|+|.++
T Consensus       142 ~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l  219 (450)
T 2jdq_A          142 RDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLL-FVSDTDVLADACWALSYL  219 (450)
T ss_dssp             HHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHT-TCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHH-ccCCHHHHHHHHHHHHHH
Confidence            9999999999999999995 78999999999999999765 4332232 378999999999 677889999999999999


Q ss_pred             hhCCC-CCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHH
Q 014945          228 CRGKP-QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT  306 (415)
Q Consensus       228 ~~~~~-~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~  306 (415)
                      +...+ ........+++|.|+.++.++++.++..++++|++++.+.+...+.+++.|+++.|+.+|.++++.++..|+++
T Consensus       220 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~  299 (450)
T 2jdq_A          220 SDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWT  299 (450)
T ss_dssp             TSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             HCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHH
Confidence            98642 22223346899999999999999999999999999999888877888889999999999999999999999999


Q ss_pred             HHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHhccCCHHHH
Q 014945          307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIK  385 (415)
Q Consensus       307 l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~i~~L~~~l~~~~~~v~  385 (415)
                      |++++.+.+...+.+++.|+++.|+.++.++ ++.+|..|+|+|+|++.+ +++..+.+++.|+++.|++++.+++++++
T Consensus       300 L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  378 (450)
T 2jdq_A          300 ISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIV  378 (450)
T ss_dssp             HHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHH
Confidence            9999999888888899999999999999998 999999999999999974 78889999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCC
Q 014945          386 KEAAWAISNATSGGS  400 (415)
Q Consensus       386 ~~a~~aL~nl~~~~~  400 (415)
                      ..|+++|.+++..++
T Consensus       379 ~~a~~aL~~l~~~~~  393 (450)
T 2jdq_A          379 QVALNGLENILRLGE  393 (450)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhch
Confidence            999999999997543

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=2.7e-36  Score=294.08  Aligned_cols=324  Identities=27%  Similarity=0.398  Sum_probs=293.4

Q ss_pred             ccHHHHHHhhcCCC-HHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchh
Q 014945           71 ESLPAMVAGVWSDD-RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  149 (415)
Q Consensus        71 ~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  149 (415)
                      +.+|.|+++|.+++ +.++..|+++|.++.+.. ......+++.|++|.|+.+|.+++ +.++..|+|+|++++.+++..
T Consensus       117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~aL~~l~~~~~~~  194 (528)
T 4b8j_A          117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-SENTKVVIDHGAVPIFVKLLGSSS-DDVREQAVWALGNVAGDSPKC  194 (528)
T ss_dssp             TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHTCHHH
T ss_pred             CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHhCCcHHHHHHHhcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence            68999999999876 999999999999998753 556677889999999999999988 999999999999999988889


Q ss_pred             hHHHHhCCChHHHHHhh-CCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhh
Q 014945          150 TRVVIDHGAVPIFVRLL-SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  228 (415)
Q Consensus       150 ~~~~~~~g~i~~L~~ll-~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~  228 (415)
                      +..+.+.|+++.|+.++ .+.++.++..++|+|++++...+.. ......|+++.|+.++ .+.+..++..++|+|.+++
T Consensus       195 ~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~  272 (528)
T 4b8j_A          195 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP-SFEQTRPALPALARLI-HSNDEEVLTDACWALSYLS  272 (528)
T ss_dssp             HHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC-CHHHHTTHHHHHHHHT-TCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999 6688999999999999999876533 3445688999999999 7788999999999999999


Q ss_pred             hCCCCC-chhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCC-ChhhHHHHHHH
Q 014945          229 RGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP-SPSVLIPALRT  306 (415)
Q Consensus       229 ~~~~~~-~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~  306 (415)
                      ...+.. ......+++|.|+.+|.++++.++..++++|++++.+.+...+.+++.|+++.|+.+|.++ ++.++..|+|+
T Consensus       273 ~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~  352 (528)
T 4b8j_A          273 DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWT  352 (528)
T ss_dssp             SSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHH
Confidence            764322 2333468999999999999999999999999999998888888899999999999999988 89999999999


Q ss_pred             HHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHhccCCHHHH
Q 014945          307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIK  385 (415)
Q Consensus       307 l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~i~~L~~~l~~~~~~v~  385 (415)
                      |+|++.+.+.....+++.|+++.|+.++.++ ++.++..|+|+|+|++.+ +++....+++.|+++.|+.+|.+++++++
T Consensus       353 L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~  431 (528)
T 4b8j_A          353 ISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIV  431 (528)
T ss_dssp             HHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHH
T ss_pred             HHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHH
Confidence            9999998888888999999999999999998 999999999999999984 89999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCC
Q 014945          386 KEAAWAISNATSGG  399 (415)
Q Consensus       386 ~~a~~aL~nl~~~~  399 (415)
                      ..|+++|.+++..+
T Consensus       432 ~~al~~L~~l~~~~  445 (528)
T 4b8j_A          432 TVCLEGLENILKVG  445 (528)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998654

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=3.9e-36  Score=292.97  Aligned_cols=326  Identities=27%  Similarity=0.372  Sum_probs=292.0

Q ss_pred             ccHHHHHHhhcCC-CHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchh
Q 014945           71 ESLPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  149 (415)
Q Consensus        71 ~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  149 (415)
                      +.+|.|++.|.++ ++.++..|+++|.++.+.. ......+++.|++|.|+.+|.+++ +.++..|+|+|++++.++++.
T Consensus       130 g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~vr~~A~~aL~~l~~~~~~~  207 (530)
T 1wa5_B          130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTDY  207 (530)
T ss_dssp             TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCccc
Confidence            6899999999987 8999999999999997653 445667888999999999999888 999999999999999988889


Q ss_pred             hHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhh
Q 014945          150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  229 (415)
Q Consensus       150 ~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~  229 (415)
                      +..+...|+++.|+.++.+.++.++..|+|+|++|+.+...........++++.|+.++ .+.+..++..++|+|.+++.
T Consensus       208 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~~  286 (530)
T 1wa5_B          208 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSD  286 (530)
T ss_dssp             HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHS
T ss_pred             hHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999977622334556678999999999 67788999999999999997


Q ss_pred             CCCC-CchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHH
Q 014945          230 GKPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG  308 (415)
Q Consensus       230 ~~~~-~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~  308 (415)
                      ..+. .......+++|.|+.+|.++++.++..++++|++++.+.+...+.+++.|+++.|+.+|.++++.++..|+++|+
T Consensus       287 ~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~  366 (530)
T 1wa5_B          287 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS  366 (530)
T ss_dssp             SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            6432 222233589999999999999999999999999999988888888899999999999999999999999999999


Q ss_pred             HhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc-CCH--HHHHHHHHcCCHHHHHHHhccCCHHHH
Q 014945          309 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNV--NQIQAIIEAGIIGPLVNLLLNAEFEIK  385 (415)
Q Consensus       309 nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~--~~~~~l~~~~~i~~L~~~l~~~~~~v~  385 (415)
                      +++.+.+...+.+++.|+++.|+.++.++ ++.++..|+|+|+|++. +.+  +....+++.|+++.|+.++.+++++++
T Consensus       367 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~  445 (530)
T 1wa5_B          367 NITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII  445 (530)
T ss_dssp             HHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHH
Confidence            99998888888899999999999999988 99999999999999998 455  788899999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCC
Q 014945          386 KEAAWAISNATSGGS  400 (415)
Q Consensus       386 ~~a~~aL~nl~~~~~  400 (415)
                      ..|+++|.+++..++
T Consensus       446 ~~al~aL~~l~~~~~  460 (530)
T 1wa5_B          446 EVTLDALENILKMGE  460 (530)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhh
Confidence            999999999997543

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=3.5e-36  Score=286.61  Aligned_cols=320  Identities=18%  Similarity=0.216  Sum_probs=269.0

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (415)
Q Consensus        72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  151 (415)
                      .+|.+++.|+++++..+..|+++|+++...+ .+....+++.|++|.|+++|++++ +.++..|+|+|.|++.++++++.
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~k~   80 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHH
Confidence            6799999999999999999999999986532 333448889999999999999988 99999999999999998899999


Q ss_pred             HHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhcc--------c-------hhHh
Q 014945          152 VVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE--------H-------AKLS  215 (415)
Q Consensus       152 ~~~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~--------~-------~~~~  215 (415)
                      .+++.|++|.|+++|. ++++++++.++|+|+||+.+ +..+..+.+ |+++.|+.++..        .       .+..
T Consensus        81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~  158 (457)
T 1xm9_A           81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPE  158 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred             HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHH
Confidence            9999999999999999 88999999999999999988 568888888 999999999931        1       2467


Q ss_pred             HHHHHHHHHHHhhhCCCCCchhhh-h-chHHHHHHhhcC-----------------------------------------
Q 014945          216 MLRNATWTLSNFCRGKPQPLFEQT-R-PALPALERLIHS-----------------------------------------  252 (415)
Q Consensus       216 ~~~~a~~~l~~l~~~~~~~~~~~~-~-~~l~~l~~lL~~-----------------------------------------  252 (415)
                      ++++++|+|.||+.. +....... . |++|.|+.+|++                                         
T Consensus       159 v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~  237 (457)
T 1xm9_A          159 VFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA  237 (457)
T ss_dssp             HHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC
T ss_pred             HHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccc
Confidence            888999999999976 22111112 2 666666655542                                         


Q ss_pred             ----------------------------------------------------------CChhHHHHHHHHHHHhccCChH
Q 014945          253 ----------------------------------------------------------NDDEVLTDACWALSYLSDGTND  274 (415)
Q Consensus       253 ----------------------------------------------------------~d~~v~~~a~~~l~~l~~~~~~  274 (415)
                                                                                .++.+++.++|+|++++.+...
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~  317 (457)
T 1xm9_A          238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL  317 (457)
T ss_dssp             ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred             ccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCc
Confidence                                                                      2356777889999999976543


Q ss_pred             H---H-HHHH-HcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCcc------chH
Q 014945          275 K---I-QAVI-EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKK------SIK  343 (415)
Q Consensus       275 ~---~-~~~~-~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~------~v~  343 (415)
                      .   + +.++ +.|+++.|+.+|.+++..++..|+|+|+|++.+.  ....++..|+++.|+.+|.++ ++      ++.
T Consensus       318 ~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~--~~~~~i~~~~i~~Lv~lL~~~-~~~~~~~~~v~  394 (457)
T 1xm9_A          318 MSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP--LLHRVMGNQVFPEVTRLLTSH-TGNTSNSEDIL  394 (457)
T ss_dssp             HHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG--GGHHHHHHHTHHHHHHTTTSC-CSCSTTHHHHH
T ss_pred             chHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH--HHHHHHHHhhhHHHHHhccCC-CCCCCCcHHHH
Confidence            2   2 3344 5799999999999999999999999999999854  345566778999999999887 43      588


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccC-CHHHHHHHHHHHHHHhCCC
Q 014945          344 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGG  399 (415)
Q Consensus       344 ~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~-~~~v~~~a~~aL~nl~~~~  399 (415)
                      ..++++|+|+..+++++...+.+.|+++.|++++.++ +.++++.|+|.|.|+..+.
T Consensus       395 ~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~  451 (457)
T 1xm9_A          395 SSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK  451 (457)
T ss_dssp             HHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcch
Confidence            8999999999998888899999999999999999999 8999999999999998663

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=3.5e-36  Score=297.37  Aligned_cols=326  Identities=14%  Similarity=0.101  Sum_probs=279.4

Q ss_pred             hccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCC----------------------------c---hhHHHhcCchHH
Q 014945           70 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSP----------------------------P---INEVIQSGVVPR  118 (415)
Q Consensus        70 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~----------------------------~---~~~~~~~g~i~~  118 (415)
                      .+.+|.|+++|+++++.+++.|+++|.++....+..                            .   ++.+++.|++|.
T Consensus       420 ~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~  499 (810)
T 3now_A          420 KASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTA  499 (810)
T ss_dssp             HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             cchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHH
Confidence            468999999999999999999999999998743111                            0   256889999999


Q ss_pred             HHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC-chhH-HHHH
Q 014945          119 FIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKCR-DLVL  196 (415)
Q Consensus       119 L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~-~~~~-~~~~  196 (415)
                      |+.++++++ +.+|.+|+|+|+|++. +++++..+++.|++|.|+.+|.++++..++.|+|+|+|++.+. +... ....
T Consensus       500 LV~LL~s~s-~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~  577 (810)
T 3now_A          500 LCALAKTES-HNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQR  577 (810)
T ss_dssp             HHHHHTCCC-HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHH
T ss_pred             HHHHHcCCC-HHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchh
Confidence            999999988 9999999999999997 4789999999999999999999999999999999999998643 3210 0001


Q ss_pred             hcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCC-CchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHH
Q 014945          197 SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK  275 (415)
Q Consensus       197 ~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~  275 (415)
                      ..|++++|+.+|..+.+...+..++|+|.||+...+. .......+++|.|+.++.++++.++..|+++++|++.+++..
T Consensus       578 ~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~  657 (810)
T 3now_A          578 SLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVI  657 (810)
T ss_dssp             HHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHH
T ss_pred             hhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHH
Confidence            2359999999995333445567899999999987522 223344689999999999999999999999999999877655


Q ss_pred             HHHHHH-cCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHH-CCChHHHHHHhcCCCccchHHHHHHHHHHH
Q 014945          276 IQAVIE-AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN-HQALPCLLDLLTQNYKKSIKKEACWTISNI  353 (415)
Q Consensus       276 ~~~~~~-~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl  353 (415)
                       ..+++ .|.++.|+.++.+++..++..|+|+|+|++.+++...+.+++ .|+++.|+.++.++ +..+++.|+|+++|+
T Consensus       658 -~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~-d~~vq~~A~~aL~NL  735 (810)
T 3now_A          658 -KMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANP-SPAVQHRGIVIILNM  735 (810)
T ss_dssp             -HHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCS-SHHHHHHHHHHHHHH
T ss_pred             -HHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCC-CHHHHHHHHHHHHHH
Confidence             44554 689999999999999999999999999999988888899999 89999999999999 999999999999999


Q ss_pred             hcCCHHHHHHHHHcCCHHHHHHHhccC---CHHHHHHHHHHHHHHhCCC
Q 014945          354 TAGNVNQIQAIIEAGIIGPLVNLLLNA---EFEIKKEAAWAISNATSGG  399 (415)
Q Consensus       354 ~~~~~~~~~~l~~~~~i~~L~~~l~~~---~~~v~~~a~~aL~nl~~~~  399 (415)
                      +.+++++...+++.|+++.|+.+++..   +.++.+.|..+|.++...+
T Consensus       736 ~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g  784 (810)
T 3now_A          736 INAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYR  784 (810)
T ss_dssp             HTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCC
Confidence            998899999999999999999999765   6899999999999998543

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=7.5e-34  Score=271.96  Aligned_cols=325  Identities=16%  Similarity=0.166  Sum_probs=270.8

Q ss_pred             hccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchh
Q 014945           70 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  149 (415)
Q Consensus        70 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  149 (415)
                      .|+||.|+++|.++++.++..|+++|+++....+.++...+++.|++|.|+++|.+..+.+++..|+++|.+++. +++.
T Consensus        89 ~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~  167 (584)
T 3l6x_A           89 LKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSI  167 (584)
T ss_dssp             TTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGG
T ss_pred             cCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-Cchh
Confidence            378999999999999999999999999997643356777899999999999999974338999999999999998 4788


Q ss_pred             hHHHHhCCChHHHHHhhC------------------CCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCC-hHHHHHHhcc
Q 014945          150 TRVVIDHGAVPIFVRLLS------------------SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGA-LMPLLAQFNE  210 (415)
Q Consensus       150 ~~~~~~~g~i~~L~~ll~------------------~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~-i~~L~~~l~~  210 (415)
                      +..+++ ++++.|++++.                  ..++.++++|+++|.||+.+++..|..+.+.++ ++.|+.++..
T Consensus       168 k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~  246 (584)
T 3l6x_A          168 KMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQA  246 (584)
T ss_dssp             HHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHH
T ss_pred             hHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHH
Confidence            888886 56999999771                  246799999999999999999888888888654 6799999853


Q ss_pred             c-----hhHhHHHHHHHHHHHhhhCC----CCC----------------------chhhhhchHHHHHHhhc-CCChhHH
Q 014945          211 H-----AKLSMLRNATWTLSNFCRGK----PQP----------------------LFEQTRPALPALERLIH-SNDDEVL  258 (415)
Q Consensus       211 ~-----~~~~~~~~a~~~l~~l~~~~----~~~----------------------~~~~~~~~l~~l~~lL~-~~d~~v~  258 (415)
                      .     .+...+++|+|+|.||+...    +..                      ......++++.++.+|. +.++.++
T Consensus       247 ~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~  326 (584)
T 3l6x_A          247 EIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAIL  326 (584)
T ss_dssp             HHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHH
T ss_pred             hhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHH
Confidence            2     46678999999999999652    100                      00111356788899995 5679999


Q ss_pred             HHHHHHHHHhccCChH---HHH-HHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHh
Q 014945          259 TDACWALSYLSDGTND---KIQ-AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL  334 (415)
Q Consensus       259 ~~a~~~l~~l~~~~~~---~~~-~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll  334 (415)
                      ++|+|+|.||+.+...   ..+ .+.+.++++.|+.+|.+++..++..|+++|+|++.+...  +.++..|+++.|+.+|
T Consensus       327 E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~--~~~I~~g~ip~LV~LL  404 (584)
T 3l6x_A          327 EASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARN--KELIGKHAIPNLVKNL  404 (584)
T ss_dssp             HHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSC--HHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhH--HHHHHhCCHHHHHHHh
Confidence            9999999999876522   223 334468899999999999999999999999999987653  3456789999999999


Q ss_pred             cCCC-------ccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccC--CHHHHHHHHHHHHHHhCC
Q 014945          335 TQNY-------KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSG  398 (415)
Q Consensus       335 ~~~~-------~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~--~~~v~~~a~~aL~nl~~~  398 (415)
                      .++.       ...+...|||+|+||+.+++++.+.+++.|+++.|+.++.++  .+.+++.|+|+|+|+..+
T Consensus       405 ~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~  477 (584)
T 3l6x_A          405 PGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY  477 (584)
T ss_dssp             SSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred             cCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence            8762       246789999999999999999999999999999999999986  789999999999999975

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=3.9e-35  Score=280.85  Aligned_cols=333  Identities=19%  Similarity=0.220  Sum_probs=271.9

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCC-Cchh
Q 014945           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASG-TSEN  149 (415)
Q Consensus        71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~-~~~~  149 (415)
                      ..++.++++|.++++.++..|+++|.++.... .++...+++.|+||.|+++|++++ +.++..|+|+|.||+.+ ++++
T Consensus        48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~~n  125 (584)
T 3l6x_A           48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQDN  125 (584)
T ss_dssp             CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCHHH
T ss_pred             ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCHHH
Confidence            58999999999999999999999999997654 566778899999999999999998 99999999999999985 6899


Q ss_pred             hHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhc-----------------cc
Q 014945          150 TRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN-----------------EH  211 (415)
Q Consensus       150 ~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~-----------------~~  211 (415)
                      +..+++.|+|+.|+.+|.+ .+..+++.++++|+||+.. +..+..+.+ ++++.|+.++.                 ..
T Consensus       126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~  203 (584)
T 3l6x_A          126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHI  203 (584)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CC
T ss_pred             HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHh-ccHHHHHHHHhccccccccccccccccccc
Confidence            9999999999999999997 6789999999999999985 457777775 57999999872                 12


Q ss_pred             hhHhHHHHHHHHHHHhhhCCCC-Cchhh-hhchHHHHHHhhcC------CChhHHHHHHHHHHHhccCChHH--------
Q 014945          212 AKLSMLRNATWTLSNFCRGKPQ-PLFEQ-TRPALPALERLIHS------NDDEVLTDACWALSYLSDGTNDK--------  275 (415)
Q Consensus       212 ~~~~~~~~a~~~l~~l~~~~~~-~~~~~-~~~~l~~l~~lL~~------~d~~v~~~a~~~l~~l~~~~~~~--------  275 (415)
                      .+..++++++|+|.||+...+. ..... ..++++.|+.++++      .+....++++|+|.||+......        
T Consensus       204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~  283 (584)
T 3l6x_A          204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ  283 (584)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred             ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence            2578999999999999987533 22222 25778899999864      46789999999999998652111        


Q ss_pred             -----------------HHHHHHcCcHHHHHHhcC-CCChhhHHHHHHHHHHhhcCChH---HHH-HHHHCCChHHHHHH
Q 014945          276 -----------------IQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDM---QTQ-CIINHQALPCLLDL  333 (415)
Q Consensus       276 -----------------~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~l~nl~~~~~~---~~~-~~~~~~~l~~L~~l  333 (415)
                                       ++.+...++++.|+.+|. +.++.+++.|+++|+|++.+...   ..+ .+.+.+++|.|+.+
T Consensus       284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L  363 (584)
T 3l6x_A          284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL  363 (584)
T ss_dssp             ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred             hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence                             112233355778889995 56789999999999999987632   223 33346889999999


Q ss_pred             hcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccC--------CHHHHHHHHHHHHHHhCCCCHHHHH
Q 014945          334 LTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--------EFEIKKEAAWAISNATSGGSNEQIK  405 (415)
Q Consensus       334 l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~--------~~~v~~~a~~aL~nl~~~~~~~~~~  405 (415)
                      |.++ +..+++.|+|+|+|++.+..  .+.++..|+++.|+.+|.++        ..+++..|+++|.|++.. ++++.+
T Consensus       364 L~s~-~~~v~~~A~~aL~nLs~~~~--~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~-~~~~~~  439 (584)
T 3l6x_A          364 LTNE-HERVVKAASGALRNLAVDAR--NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE-NLEAAK  439 (584)
T ss_dssp             GGCS-CHHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT-CHHHHH
T ss_pred             HcCC-CHHHHHHHHHHHHHHhCChh--HHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC-CHHHHH
Confidence            9999 99999999999999998643  23456889999999999976        367899999999999976 667777


Q ss_pred             HHHHHhhCC
Q 014945          406 YKFFYVSRT  414 (415)
Q Consensus       406 ~l~~~~~~g  414 (415)
                      .+   ++.|
T Consensus       440 ~I---~~~g  445 (584)
T 3l6x_A          440 KL---RETQ  445 (584)
T ss_dssp             HH---HHTT
T ss_pred             HH---HHCC
Confidence            77   6766

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=9.7e-33  Score=269.23  Aligned_cols=327  Identities=20%  Similarity=0.246  Sum_probs=276.0

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh
Q 014945           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  150 (415)
Q Consensus        71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  150 (415)
                      +.++.|++.|+++++.++..|+++|.++.... ......+.+.|++|.|++++.+++ ++++..++.+|.+++.++++.+
T Consensus       101 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~~L~~la~~~~~~~  178 (529)
T 1jdh_A          101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK  178 (529)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cchHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhCCHHHH
Confidence            78999999999999999999999999998764 455667778999999999999988 8999999999999999889999


Q ss_pred             HHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhh
Q 014945          151 RVVIDHGAVPIFVRLLSSP-TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  229 (415)
Q Consensus       151 ~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~  229 (415)
                      ..+.+.|+++.|+.++.++ ....+..++.+|.+++... ..+..+.+.|+++.|+.++ .+.+..++..++|++.+++.
T Consensus       179 ~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~L~~l~~  256 (529)
T 1jdh_A          179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD  256 (529)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTST-THHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCc-ccHHHHHHCCCHHHHHHHH-hCCChHHHHHHHHHHHHHhc
Confidence            9999999999999999864 4567788999999999754 5788999999999999999 66688999999999999998


Q ss_pred             CCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCC--CChhhHHHHHHHH
Q 014945          230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTV  307 (415)
Q Consensus       230 ~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~v~~~a~~~l  307 (415)
                      ..+..  ....+++|.|++++.+++++++..++|+|++++.++++....+.+.|+++.|+.+|.+  +++.++..++++|
T Consensus       257 ~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L  334 (529)
T 1jdh_A          257 AATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  334 (529)
T ss_dssp             TCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHH
Confidence            75332  2346899999999999999999999999999999888788889999999999999975  3478999999999


Q ss_pred             HHhhcCChH---HHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHH
Q 014945          308 GNIVTGDDM---QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI  384 (415)
Q Consensus       308 ~nl~~~~~~---~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v  384 (415)
                      +|++.+.+.   ....+.+.|+++.|..++.++.++.+++.++|+|+|++.+... ...+.+.|+++.|+.++.++++++
T Consensus       335 ~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~v  413 (529)
T 1jdh_A          335 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRAHQDT  413 (529)
T ss_dssp             HHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-HHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhh-hHHHHHcCCHHHHHHHHHHHhHHH
Confidence            999986543   3567889999999999999883359999999999999986544 478889999999999999999999


Q ss_pred             HHHHHHHHHH--HhCCCCHHHH
Q 014945          385 KKEAAWAISN--ATSGGSNEQI  404 (415)
Q Consensus       385 ~~~a~~aL~n--l~~~~~~~~~  404 (415)
                      |++|+|++.|  +..+++++++
T Consensus       414 ~~~a~~~l~n~~~~~~~~~~~i  435 (529)
T 1jdh_A          414 QRRTSMGGTQQQFVEGVRMEEI  435 (529)
T ss_dssp             C-----------CBTTBCHHHH
T ss_pred             HHHHhcccCchhhhccccHHHH
Confidence            9999999998  5555554443

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=100.00  E-value=3.1e-33  Score=254.91  Aligned_cols=271  Identities=19%  Similarity=0.193  Sum_probs=235.4

Q ss_pred             hHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHHHHhcCCCchhHHHHHh
Q 014945          129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-----------PTDDVREQAVWALGNVAGDSPKCRDLVLS  197 (415)
Q Consensus       129 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-----------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~  197 (415)
                      ...+..|+|+|.|++.+ ++++..+++.|+++.|+.+|..           .++.++..|+|+|.||+.+++..+..+..
T Consensus        46 ~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~  124 (354)
T 3nmw_A           46 EHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS  124 (354)
T ss_dssp             GGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            45566899999999997 8999999999999999999942           24679999999999999888777777754


Q ss_pred             -cCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC--CCCchhhhhchHHHHHHhh-cCCChhHHHHHHHHHHHhccCCh
Q 014945          198 -NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK--PQPLFEQTRPALPALERLI-HSNDDEVLTDACWALSYLSDGTN  273 (415)
Q Consensus       198 -~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~l~~l~~lL-~~~d~~v~~~a~~~l~~l~~~~~  273 (415)
                       .|+++.|+.+| .++++.++..++|+|.||+...  .........|++|.|+++| .+.+++++..++++|.+|+...+
T Consensus       125 ~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~  203 (354)
T 3nmw_A          125 MKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT  203 (354)
T ss_dssp             CHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred             cCCcHHHHHHHH-CCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence             45599999999 7788999999999999999752  2223334478999999975 66789999999999999998665


Q ss_pred             HHHHHHH-HcCcHHHHHHhcCCCCh----hhHHHHHHHHHHhhc---CChHHHHHHHHCCChHHHHHHhcCCCccchHHH
Q 014945          274 DKIQAVI-EAGVCPRLVELLRHPSP----SVLIPALRTVGNIVT---GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKE  345 (415)
Q Consensus       274 ~~~~~~~-~~~~i~~L~~lL~~~~~----~v~~~a~~~l~nl~~---~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~  345 (415)
                      +....+. ..|+++.|+.+|.+.++    .++..|+++|.|++.   +.++.++.+.+.|+++.|+.+|.++ +..+++.
T Consensus       204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~  282 (354)
T 3nmw_A          204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSN  282 (354)
T ss_dssp             HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHH
T ss_pred             hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHH
Confidence            5445555 68999999999987654    489999999999997   7888899999999999999999998 9999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCHH
Q 014945          346 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNE  402 (415)
Q Consensus       346 a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~  402 (415)
                      |+|+|+|++.+++++++.+++.|+++.|++++.++++++++.|+|+|.|++.+.+..
T Consensus       283 A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~  339 (354)
T 3nmw_A          283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK  339 (354)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred             HHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence            999999999889999999999999999999999999999999999999999885543

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=3.4e-33  Score=266.06  Aligned_cols=281  Identities=19%  Similarity=0.207  Sum_probs=238.7

Q ss_pred             chHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHH
Q 014945          115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL  194 (415)
Q Consensus       115 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~  194 (415)
                      .+|.|+.+|++++ ++++..|+++|.+++.+++..+..+.+.|++|.|+.+|.++++.++..|+|+|.||+.+++..+..
T Consensus         3 ~l~~lv~~L~s~~-~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~   81 (457)
T 1xm9_A            3 TIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            4899999999998 899999999999999887788889999999999999999999999999999999999988889999


Q ss_pred             HHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhc--------C--------CChhHH
Q 014945          195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH--------S--------NDDEVL  258 (415)
Q Consensus       195 ~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~--------~--------~d~~v~  258 (415)
                      +.+.|+++.|+.+|..+.+..+++.++|+|.||+..+ ........+++|.|+.+|.        +        .++.+.
T Consensus        82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~-~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~  160 (457)
T 1xm9_A           82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD-ELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF  160 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSS-STHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred             HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCH-HhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence            9999999999999954778999999999999999884 3333333499999999993        2        356778


Q ss_pred             HHHHHHHHHhccCChHHHHHHHHc-CcHHHHHHhcCC------CChhhHHHHHHHHHHhhcCC-----------------
Q 014945          259 TDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRH------PSPSVLIPALRTVGNIVTGD-----------------  314 (415)
Q Consensus       259 ~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~L~~lL~~------~~~~v~~~a~~~l~nl~~~~-----------------  314 (415)
                      ..++|+|.|++.. ++..+.+.+. |+++.|+.+|.+      .+..+...++.+|.|++...                 
T Consensus       161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~  239 (457)
T 1xm9_A          161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN  239 (457)
T ss_dssp             HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred             HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence            8999999999987 6677778887 999999999975      45678888999999986321                 


Q ss_pred             ---------------------------------hHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHH--
Q 014945          315 ---------------------------------DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN--  359 (415)
Q Consensus       315 ---------------------------------~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~--  359 (415)
                                                       +...+.+++.|+++.++.+|.++.++.+++.|+|+|+|++.++..  
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~  319 (457)
T 1xm9_A          240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS  319 (457)
T ss_dssp             --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred             ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence                                             112334456678899999998775789999999999999986432  


Q ss_pred             -HH-HHHH-HcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945          360 -QI-QAII-EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG  398 (415)
Q Consensus       360 -~~-~~l~-~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~  398 (415)
                       .+ +..+ +.|++|.|+++|.+++++++++|+|+|.|++.+
T Consensus       320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~  361 (457)
T 1xm9_A          320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH  361 (457)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC
Confidence             23 4445 689999999999999999999999999999975

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=3.4e-32  Score=270.94  Aligned_cols=327  Identities=19%  Similarity=0.242  Sum_probs=276.2

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh
Q 014945           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  150 (415)
Q Consensus        71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  150 (415)
                      +.++.|+++|+++++.++..|+++|.++.+.. ......+.+.|++|.|+++|++++ +.++..++.+|.+++.++++.+
T Consensus        98 g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~~~~  175 (644)
T 2z6h_A           98 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK  175 (644)
T ss_dssp             THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCC-HHHHHHHHHHHHHHHhcCcHHH
Confidence            68999999999999999999999999998764 556667888999999999999988 8888889999999998889999


Q ss_pred             HHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhh
Q 014945          151 RVVIDHGAVPIFVRLLSSP-TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  229 (415)
Q Consensus       151 ~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~  229 (415)
                      ..+.+.|+++.|+.++.+. ...++..++.+|.|++.. +..+..+.+.|+++.|+.++ .+.+..++..++|+|.+++.
T Consensus       176 ~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~nL~~  253 (644)
T 2z6h_A          176 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD  253 (644)
T ss_dssp             HHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHHHHTTT-TCSCHHHHHHHHHHHHHHGG
T ss_pred             HHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHhh
Confidence            9999999999999999875 467889999999999965 45789999999999999999 66688999999999999998


Q ss_pred             CCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCC--ChhhHHHHHHHH
Q 014945          230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRTV  307 (415)
Q Consensus       230 ~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~l  307 (415)
                      ..+.  .....+++|.|+.++.+++++++..++|+|++++..++...+.+.+.|+++.|+.+|.+.  .+.++..|+++|
T Consensus       254 ~~~~--~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL  331 (644)
T 2z6h_A          254 AATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  331 (644)
T ss_dssp             GCTT--CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHH
Confidence            7533  234468999999999999999999999999999998888788899999999999999763  379999999999


Q ss_pred             HHhhcCCh--HH-HHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHH
Q 014945          308 GNIVTGDD--MQ-TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI  384 (415)
Q Consensus       308 ~nl~~~~~--~~-~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v  384 (415)
                      +|++...+  .. ...+.+.|+++.|+.+|.++.++.+++.|+|+|+|++.+... ...+++.|+++.|+.++.++++++
T Consensus       332 ~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~-~~~i~~~~~i~~Lv~lL~~~~~~v  410 (644)
T 2z6h_A          332 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRAHQDT  410 (644)
T ss_dssp             HHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-HHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHH-HHHHHHcCCHHHHHHHHhccchhh
Confidence            99997543  22 334778899999999999883469999999999999987554 478889999999999999888888


Q ss_pred             HHHHHHHHHH--HhCCCCHHHH
Q 014945          385 KKEAAWAISN--ATSGGSNEQI  404 (415)
Q Consensus       385 ~~~a~~aL~n--l~~~~~~~~~  404 (415)
                      |++|+|+++|  +..+++.+++
T Consensus       411 r~~a~~al~n~~~~~~~~~~~v  432 (644)
T 2z6h_A          411 QRRTSMGGTQQQFVEGVRMEEI  432 (644)
T ss_dssp             TTC----------CCSSCHHHH
T ss_pred             hhHhhhccccchhcccccHHHH
Confidence            7777777777  5555444444

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=100.00  E-value=5.6e-33  Score=253.17  Aligned_cols=273  Identities=19%  Similarity=0.168  Sum_probs=236.2

Q ss_pred             HHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCC----------CChHHHHHHHHHHHHHhCCCchhhHHHH
Q 014945           85 RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD----------DFPQLQFEAAWALTNIASGTSENTRVVI  154 (415)
Q Consensus        85 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~----------~~~~i~~~a~~~L~~l~~~~~~~~~~~~  154 (415)
                      ...+..|+++|.++.. . .+..+.+++.|+++.|+.+|..+          .++.++..|+|+|.|++.+++..+..+.
T Consensus        46 ~~~~~~A~~aL~nls~-d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~  123 (354)
T 3nmw_A           46 EHQICPAVCVLMKLSF-D-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC  123 (354)
T ss_dssp             GGTHHHHHHHHHHHHT-S-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcC-C-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3455689999999954 3 57778899999999999999521          1268999999999999998777777775


Q ss_pred             h-CCChHHHHHhhCCCCHHHHHHHHHHHHHhcCC-CchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC-
Q 014945          155 D-HGAVPIFVRLLSSPTDDVREQAVWALGNVAGD-SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-  231 (415)
Q Consensus       155 ~-~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~-  231 (415)
                      . .|+||.|+.+|.++++++++.|+|+|+||+.. ++..+..+.+.|++++|+.+|..+.+..+++.++++|.||+... 
T Consensus       124 ~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~  203 (354)
T 3nmw_A          124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT  203 (354)
T ss_dssp             HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred             HcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence            5 46699999999999999999999999999985 66789999999999999998756678889999999999999843 


Q ss_pred             CCCchhh-hhchHHHHHHhhcCCCh----hHHHHHHHHHHHhcc---CChHHHHHHHHcCcHHHHHHhcCCCChhhHHHH
Q 014945          232 PQPLFEQ-TRPALPALERLIHSNDD----EVLTDACWALSYLSD---GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPA  303 (415)
Q Consensus       232 ~~~~~~~-~~~~l~~l~~lL~~~d~----~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a  303 (415)
                      ....... ..+++|.|+.+|.+.++    +++..++|+|.+++.   ..++..+.+.+.|+++.|+.+|.+.+..++..|
T Consensus       204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A  283 (354)
T 3nmw_A          204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNA  283 (354)
T ss_dssp             HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHH
T ss_pred             hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHH
Confidence            2222223 57999999999987654    599999999999997   677777889999999999999999999999999


Q ss_pred             HHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHH
Q 014945          304 LRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ  360 (415)
Q Consensus       304 ~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~  360 (415)
                      +++|+|++.+++++.+.+.+.|++|.|+.++.++ ++.+++.|+|+|.|++.+++..
T Consensus       284 ~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~~~~~~~  339 (354)
T 3nmw_A          284 CGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANRPAK  339 (354)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCCGG
T ss_pred             HHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCCHHH
Confidence            9999999988888999999999999999999998 9999999999999999976654

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=3.2e-31  Score=258.43  Aligned_cols=322  Identities=16%  Similarity=0.164  Sum_probs=281.2

Q ss_pred             ccHHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchh
Q 014945           71 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  149 (415)
Q Consensus        71 ~~i~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  149 (415)
                      +.++.+++.|.+ +++..+..|+..|+++...  .++...+.+.|++|.|++++++++ +.++..|+++|.+++.+++..
T Consensus        59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~  135 (529)
T 1jdh_A           59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA  135 (529)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTH
T ss_pred             chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcch
Confidence            578999999975 4899999999999998543  356777889999999999999988 999999999999999987788


Q ss_pred             hHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhh
Q 014945          150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  229 (415)
Q Consensus       150 ~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~  229 (415)
                      +..+.+.|+++.|+.++.+++..++..++.+|.+++..++..+..+.+.|+++.|+.++....+......++.++.+++.
T Consensus       136 ~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~  215 (529)
T 1jdh_A          136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  215 (529)
T ss_dssp             HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc
Confidence            88888999999999999999999999999999999998888999999999999999999666667788889999999997


Q ss_pred             CCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHH
Q 014945          230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN  309 (415)
Q Consensus       230 ~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~n  309 (415)
                      .+.........+++|.++.++.++++.++..++|++.+++...+...   ...|+++.|+.+|.++++.++..++++|++
T Consensus       216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~  292 (529)
T 1jdh_A          216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSN  292 (529)
T ss_dssp             STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            64433344447899999999999999999999999999997654321   123789999999999999999999999999


Q ss_pred             hhcCChHHHHHHHHCCChHHHHHHhcCC-CccchHHHHHHHHHHHhcCCHH---HHHHHHHcCCHHHHHHHhccCC-HHH
Q 014945          310 IVTGDDMQTQCIINHQALPCLLDLLTQN-YKKSIKKEACWTISNITAGNVN---QIQAIIEAGIIGPLVNLLLNAE-FEI  384 (415)
Q Consensus       310 l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~v~~~a~~~l~nl~~~~~~---~~~~l~~~~~i~~L~~~l~~~~-~~v  384 (415)
                      ++.+++.....+.+.|+++.|+.++.+. .++.++..|+++|+|++.++++   ....+.+.|+++.|+.+|.+++ +.+
T Consensus       293 L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v  372 (529)
T 1jdh_A          293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL  372 (529)
T ss_dssp             HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred             HhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHH
Confidence            9998888889999999999999999764 1379999999999999986433   4567889999999999999876 599


Q ss_pred             HHHHHHHHHHHhCC
Q 014945          385 KKEAAWAISNATSG  398 (415)
Q Consensus       385 ~~~a~~aL~nl~~~  398 (415)
                      ++.|+|+|+|++.+
T Consensus       373 ~~~a~~~l~nl~~~  386 (529)
T 1jdh_A          373 IKATVGLIRNLALC  386 (529)
T ss_dssp             HHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999999975

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.98  E-value=2.9e-30  Score=261.00  Aligned_cols=317  Identities=19%  Similarity=0.248  Sum_probs=269.1

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh
Q 014945           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  150 (415)
Q Consensus        71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  150 (415)
                      +.++.|+++|+++++.++..|+++|.++.... ......+.+.|+++.|+.+|.+++ ..++..++.+|.+++.++++.+
T Consensus       234 g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~~~~e~~  311 (780)
T 2z6g_A          234 GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK  311 (780)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChHHH
Confidence            68999999999999999999999999998764 455566778999999999999987 8999999999999999888999


Q ss_pred             HHHHhCCChHHHHHhhCCCC-HHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhh
Q 014945          151 RVVIDHGAVPIFVRLLSSPT-DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  229 (415)
Q Consensus       151 ~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~  229 (415)
                      ..+.+.|+++.|+.++.+.+ ...++.++.+|.+++... ..+..+.+.|+++.|+.++ .+.+..++..++|+|.+++.
T Consensus       312 ~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L~~  389 (780)
T 2z6g_A          312 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD  389 (780)
T ss_dssp             HHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTST-THHHHHHHTTHHHHHGGGT-TCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh-HHHHHHHHhchHHHHHHHH-cCCchHHHHHHHHHHHHHhc
Confidence            99999999999999998754 456778999999999754 4688899999999999999 66678899999999999998


Q ss_pred             CCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCC-C-hhhHHHHHHHH
Q 014945          230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP-S-PSVLIPALRTV  307 (415)
Q Consensus       230 ~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~-~~v~~~a~~~l  307 (415)
                      ..+.  .....+++|.|+.+|.+.++.++..++|+|++|+...+.....+++.|+++.|+.+|.+. + +.++..|+++|
T Consensus       390 ~~~~--~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL  467 (780)
T 2z6g_A          390 AATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  467 (780)
T ss_dssp             TCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            7633  223468999999999999999999999999999998888888899999999999999753 3 48999999999


Q ss_pred             HHhhcCChH---HHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHH
Q 014945          308 GNIVTGDDM---QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI  384 (415)
Q Consensus       308 ~nl~~~~~~---~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v  384 (415)
                      +||+...++   ....+.+.|+++.|+.+|.++..+.+++.|+|+|+|++.+. .....+.+.|+++.|+.+|.++++++
T Consensus       468 ~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~  546 (780)
T 2z6g_A          468 RHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAHQDT  546 (780)
T ss_dssp             HHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSH-HHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCH-HHHHHHHHCCCHHHHHHHHHhcchhH
Confidence            999876543   23467888999999999998833499999999999999864 44578889999999999998876666


Q ss_pred             HHHHHHHHHH
Q 014945          385 KKEAAWAISN  394 (415)
Q Consensus       385 ~~~a~~aL~n  394 (415)
                      +++|+|+++|
T Consensus       547 ~~~aa~al~n  556 (780)
T 2z6g_A          547 QRRTSMGGTQ  556 (780)
T ss_dssp             HHTTC-----
T ss_pred             HHHHhhcccc
Confidence            6655555555

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.97  E-value=5.8e-30  Score=224.99  Aligned_cols=243  Identities=32%  Similarity=0.512  Sum_probs=219.7

Q ss_pred             CchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHH
Q 014945          114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD  193 (415)
Q Consensus       114 g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~  193 (415)
                      |.+|.|+++|.+++ ++++..|+++|.+++.++++.+..+.+.|+++.|+.++.++++.++..++++|++++.+++..+.
T Consensus         2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~   80 (252)
T 4hxt_A            2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK   80 (252)
T ss_dssp             CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence            57899999999998 99999999999999998888999999999999999999999999999999999999998888888


Q ss_pred             HHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 014945          194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN  273 (415)
Q Consensus       194 ~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~  273 (415)
                      .+.+.|+++.++.++                                          .+++++++..++++|.+++...+
T Consensus        81 ~~~~~~~i~~l~~ll------------------------------------------~~~~~~v~~~a~~~L~~l~~~~~  118 (252)
T 4hxt_A           81 AIVDAGGVEVLVKLL------------------------------------------TSTDSEVQKEAARALANIASGPD  118 (252)
T ss_dssp             HHHHTTHHHHHHHHT------------------------------------------TCSSHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHCCCHHHHHHHH------------------------------------------cCCCHHHHHHHHHHHHHHHcCCH
Confidence            887776666655555                                          44556677777777777776666


Q ss_pred             HHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHH
Q 014945          274 DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI  353 (415)
Q Consensus       274 ~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl  353 (415)
                      +....+.+.|+++.|+.+|.++++.++..++++|++++.+.+.....+.+.|+++.|+.++.++ ++.++..|+|+|+|+
T Consensus       119 ~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l  197 (252)
T 4hxt_A          119 EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANI  197 (252)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHHHHHHH
Confidence            6667788899999999999999999999999999999999888888899999999999999998 999999999999999


Q ss_pred             hcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCC
Q 014945          354 TAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS  400 (415)
Q Consensus       354 ~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~  400 (415)
                      +.++++....+.+.|+++.|++++.+++++++..|+|+|.|++....
T Consensus       198 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  244 (252)
T 4hxt_A          198 ASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGW  244 (252)
T ss_dssp             TTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCB
T ss_pred             HcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCC
Confidence            99889999999999999999999999999999999999999997653

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.97  E-value=3.3e-30  Score=256.65  Aligned_cols=322  Identities=16%  Similarity=0.158  Sum_probs=279.1

Q ss_pred             ccHHHHHHhhcCC-CHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchh
Q 014945           71 ESLPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  149 (415)
Q Consensus        71 ~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  149 (415)
                      +.++.+++.|.++ ++..+..|+.+|+++...  .+....+.+.|+++.|+++|++++ +.++..|+++|.+++.+.+..
T Consensus        56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~~  132 (644)
T 2z6h_A           56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA  132 (644)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS--HHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTTH
T ss_pred             ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcchh
Confidence            4689999999864 899999999999987543  346677889999999999999988 999999999999999987778


Q ss_pred             hHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhh
Q 014945          150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  229 (415)
Q Consensus       150 ~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~  229 (415)
                      +..+.+.|+++.|+.+|.++++.++..++.+|.+++...+..+..+.+.|+++.|+.++........+..++.+|.+++.
T Consensus       133 ~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~  212 (644)
T 2z6h_A          133 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  212 (644)
T ss_dssp             HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc
Confidence            88888999999999999999999999999999999988888899999999999999999666667788999999999997


Q ss_pred             CCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHH
Q 014945          230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN  309 (415)
Q Consensus       230 ~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~n  309 (415)
                      ...........++++.|+.++.+.+..++..++|+|.+++......   ....++++.|+.+|.+.++.++..++++|++
T Consensus       213 ~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~  289 (644)
T 2z6h_A          213 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN  289 (644)
T ss_dssp             CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            6444444445789999999999999999999999999999765332   1123689999999999999999999999999


Q ss_pred             hhcCChHHHHHHHHCCChHHHHHHhcCCCc-cchHHHHHHHHHHHhcCCH--HH-HHHHHHcCCHHHHHHHhccCC-HHH
Q 014945          310 IVTGDDMQTQCIINHQALPCLLDLLTQNYK-KSIKKEACWTISNITAGNV--NQ-IQAIIEAGIIGPLVNLLLNAE-FEI  384 (415)
Q Consensus       310 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~-~~v~~~a~~~l~nl~~~~~--~~-~~~l~~~~~i~~L~~~l~~~~-~~v  384 (415)
                      ++.+++.....+.+.|+++.|+.++.+..+ +.++..|+++|+|++..++  +. ...+++.|+++.|+++|.+++ +.+
T Consensus       290 L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v  369 (644)
T 2z6h_A          290 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL  369 (644)
T ss_dssp             HHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHH
T ss_pred             HHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHH
Confidence            999888888999999999999999987523 6999999999999997433  23 334778999999999999865 799


Q ss_pred             HHHHHHHHHHHhCC
Q 014945          385 KKEAAWAISNATSG  398 (415)
Q Consensus       385 ~~~a~~aL~nl~~~  398 (415)
                      ++.|+|+|+|++.+
T Consensus       370 ~~~a~~~L~nLa~~  383 (644)
T 2z6h_A          370 IKATVGLIRNLALC  383 (644)
T ss_dssp             HHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHccC
Confidence            99999999999975

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.97  E-value=1.1e-29  Score=256.76  Aligned_cols=322  Identities=16%  Similarity=0.162  Sum_probs=277.9

Q ss_pred             ccHHHHHHhhcCC-CHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchh
Q 014945           71 ESLPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  149 (415)
Q Consensus        71 ~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  149 (415)
                      +.++.|++.|.++ ++..+..|+.+|+++...  ..+...+.+.|+++.|+.+|++++ +.++..|+++|.+++.+++..
T Consensus       192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~--~~~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~  268 (780)
T 2z6g_A          192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHH--REGLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEGA  268 (780)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTTH
T ss_pred             ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence            4688999999854 899999999999997543  355667888999999999999988 999999999999999987888


Q ss_pred             hHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhh
Q 014945          150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  229 (415)
Q Consensus       150 ~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~  229 (415)
                      +..+.+.|+++.|+.+|.+++..++..++.+|.+++..++..+..+.+.|+++.|+.++...........++.++.+++.
T Consensus       269 ~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~  348 (780)
T 2z6g_A          269 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  348 (780)
T ss_dssp             HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence            88888999999999999999999999999999999988888899999999999999999655566677889999999997


Q ss_pred             CCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHH
Q 014945          230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN  309 (415)
Q Consensus       230 ~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~n  309 (415)
                      ...........++++.|+.++.+.+..++..++|++.+++......   ....++++.|+.+|.+.++.++..|+++|++
T Consensus       349 ~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~  425 (780)
T 2z6g_A          349 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN  425 (780)
T ss_dssp             STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            6433333445789999999999999999999999999999765431   1124688999999999999999999999999


Q ss_pred             hhcCChHHHHHHHHCCChHHHHHHhcCCCcc-chHHHHHHHHHHHhcCCHH---HHHHHHHcCCHHHHHHHhccCCH-HH
Q 014945          310 IVTGDDMQTQCIINHQALPCLLDLLTQNYKK-SIKKEACWTISNITAGNVN---QIQAIIEAGIIGPLVNLLLNAEF-EI  384 (415)
Q Consensus       310 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~-~v~~~a~~~l~nl~~~~~~---~~~~l~~~~~i~~L~~~l~~~~~-~v  384 (415)
                      ++.+++.....+.+.|+++.|+.++.+..+. .++..|+++|+||+..+++   ....+.+.|+++.|+++|.+++. .+
T Consensus       426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v  505 (780)
T 2z6g_A          426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPL  505 (780)
T ss_dssp             HTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred             HHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHH
Confidence            9999888888899999999999999874233 8999999999999975433   23467789999999999998764 99


Q ss_pred             HHHHHHHHHHHhCC
Q 014945          385 KKEAAWAISNATSG  398 (415)
Q Consensus       385 ~~~a~~aL~nl~~~  398 (415)
                      ++.|+|+|+|++.+
T Consensus       506 ~~~A~~aL~nLa~~  519 (780)
T 2z6g_A          506 IKATVGLIRNLALC  519 (780)
T ss_dssp             HHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999999974

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.97  E-value=1e-29  Score=223.59  Aligned_cols=239  Identities=35%  Similarity=0.556  Sum_probs=220.4

Q ss_pred             CchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHH
Q 014945          114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD  193 (415)
Q Consensus       114 g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~  193 (415)
                      ..++.++..|.+++ ++++..|+++|.++...+++.+..+++.|+++.|+.+|.++++.++..|+++|++++.+++..+.
T Consensus        12 ~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (252)
T 4db8_A           12 SELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (252)
T ss_dssp             CSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             chHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            45899999999998 89999999999887776678888999999999999999999999999999999999998888999


Q ss_pred             HHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCC-chhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 014945          194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT  272 (415)
Q Consensus       194 ~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~  272 (415)
                      .+.+.|+++.|+.++ .++++.++..++|+|.+++...+.. ......+++|.|+.+|.++++.++..++|+|++++...
T Consensus        91 ~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  169 (252)
T 4db8_A           91 AVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG  169 (252)
T ss_dssp             HHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            999999999999999 6678999999999999999876443 44455789999999999999999999999999999988


Q ss_pred             hHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHH
Q 014945          273 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN  352 (415)
Q Consensus       273 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~n  352 (415)
                      ++....+.+.|+++.|+.+|.++++.++..|+++|++++.+++.....+.+.|+++.|..++.++ ++.++..|+|+|+|
T Consensus       170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~  248 (252)
T 4db8_A          170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEK  248 (252)
T ss_dssp             HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHT
T ss_pred             hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence            88888889999999999999999999999999999999998888899999999999999999998 99999999999999


Q ss_pred             Hhc
Q 014945          353 ITA  355 (415)
Q Consensus       353 l~~  355 (415)
                      ++.
T Consensus       249 l~~  251 (252)
T 4db8_A          249 LQS  251 (252)
T ss_dssp             TC-
T ss_pred             Hhc
Confidence            974

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.97  E-value=3.8e-29  Score=219.86  Aligned_cols=239  Identities=35%  Similarity=0.516  Sum_probs=218.2

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC-CCCc
Q 014945          157 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPL  235 (415)
Q Consensus       157 g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~  235 (415)
                      ..++.++..|.+++++++..|+++|.++....+..+..+.+.|+++.|+.+| .+.++.++..++|+|.+++.+. ....
T Consensus        12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (252)
T 4db8_A           12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQ   90 (252)
T ss_dssp             CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            4588999999999999999999999887765666778899999999999999 6667999999999999999865 3333


Q ss_pred             hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh
Q 014945          236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD  315 (415)
Q Consensus       236 ~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~  315 (415)
                      .....+++|.|+.+|.++++.++..++|+|++++...+.....+.+.|+++.|+.+|.++++.++..++++|++++.+.+
T Consensus        91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~  170 (252)
T 4db8_A           91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN  170 (252)
T ss_dssp             HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh
Confidence            34447899999999999999999999999999999888776789999999999999999999999999999999999988


Q ss_pred             HHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHH
Q 014945          316 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA  395 (415)
Q Consensus       316 ~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl  395 (415)
                      .....+.+.|+++.|+.++.++ ++.++..|+|+|+|++.++++....+++.|+++.|+.++.+++++++..|+|+|.|+
T Consensus       171 ~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l  249 (252)
T 4db8_A          171 EQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL  249 (252)
T ss_dssp             HHHHHHHHTTCHHHHHHGGGCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred             HHHHHHHHCCCHHHHHHHHCCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            8888899999999999999998 999999999999999998999999999999999999999999999999999999999


Q ss_pred             hC
Q 014945          396 TS  397 (415)
Q Consensus       396 ~~  397 (415)
                      +.
T Consensus       250 ~~  251 (252)
T 4db8_A          250 QS  251 (252)
T ss_dssp             C-
T ss_pred             hc
Confidence            74

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.97  E-value=2e-28  Score=215.06  Aligned_cols=242  Identities=27%  Similarity=0.401  Sum_probs=221.7

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh
Q 014945           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  150 (415)
Q Consensus        71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  150 (415)
                      +.++.+++.|.+++++.+..|+++|.++.... .+....+++.|+++.|++++++++ +.++..|+++|++++.++++.+
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~   79 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGP-ASAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPDEAI   79 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCChHHH
Confidence            57899999999999999999999999997654 346777889999999999999998 9999999999999999889999


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhC
Q 014945          151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  230 (415)
Q Consensus       151 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~  230 (415)
                      ..+.+.|+++.|+.++.++++.++..|+++|++++...+..+..+.+.|+++.|+.++ .+.++.++..++|+|.+++..
T Consensus        80 ~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l-~~~~~~~~~~a~~~L~~l~~~  158 (252)
T 4hxt_A           80 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASG  158 (252)
T ss_dssp             HHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999988888899999999999999999 677899999999999999987


Q ss_pred             CCCC-chhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHH
Q 014945          231 KPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN  309 (415)
Q Consensus       231 ~~~~-~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~n  309 (415)
                      .+.. ......+++|.|+.++.++++.++..++++|++++...+...+.+.+.|+++.|+.++.++++.++..|+++|+|
T Consensus       159 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~  238 (252)
T 4hxt_A          159 PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALEN  238 (252)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence            5322 334447899999999999999999999999999999888888889999999999999999999999999999999


Q ss_pred             hhcCCh
Q 014945          310 IVTGDD  315 (415)
Q Consensus       310 l~~~~~  315 (415)
                      ++...+
T Consensus       239 l~~~~~  244 (252)
T 4hxt_A          239 IKSGGW  244 (252)
T ss_dssp             HHHTCB
T ss_pred             HHcCCC
Confidence            997654

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.2e-25  Score=218.06  Aligned_cols=320  Identities=10%  Similarity=0.127  Sum_probs=257.1

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHH-hcCchHHHHHhhcC-CCChHHHHHHHHHHHHHhCCCch--
Q 014945           73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI-QSGVVPRFIEFLSR-DDFPQLQFEAAWALTNIASGTSE--  148 (415)
Q Consensus        73 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~g~i~~L~~ll~~-~~~~~i~~~a~~~L~~l~~~~~~--  148 (415)
                      .+.+.+.|.+++.+.+..|++.|..+.. . .+..+.+. +.|+++.|+++++. .+ ..+.+.++.+|.|++...+.  
T Consensus       336 a~~~~~~L~~~~~~~~~~AvEgLaYLSl-~-~~VKe~L~~d~~~L~~Lv~llk~~~d-~s~~Ygal~IL~NLt~~~~~~~  412 (778)
T 3opb_A          336 SEIFINAISRRIVPKVEMSVEALAYLSL-K-ASVKIMIRSNESFTEILLTMIKSQKM-THCLYGLLVIMANLSTLPEEXX  412 (778)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHHHHTT-S-SHHHHHHHHCHHHHHHHHHHHTTTCC-TTHHHHHHHHHHHTTCCCCCCC
T ss_pred             HHHHHHHHhcCCccHHHHHHHHHHHHhC-C-HHHHHHHHhCHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhcCCCcccc
Confidence            4667778888777778999999999843 2 34444454 56779999999996 55 78999999999999974331  


Q ss_pred             ------------------------------------hhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhH
Q 014945          149 ------------------------------------NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR  192 (415)
Q Consensus       149 ------------------------------------~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~  192 (415)
                                                          .+..+.+.|++|.|+.++.++++.+++.++|+|.||+.+ +.+|
T Consensus       413 ~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R  491 (778)
T 3opb_A          413 XXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFI  491 (778)
T ss_dssp             CCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGH
T ss_pred             hhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHH
Confidence                                                345677899999999999999999999999999999977 5689


Q ss_pred             HHHHhcCChHHHHHHhccchhH--hHHHHHHHHHHHhhhCC-CCCchh--hhhchHHHHHHhhcC-CCh-----------
Q 014945          193 DLVLSNGALMPLLAQFNEHAKL--SMLRNATWTLSNFCRGK-PQPLFE--QTRPALPALERLIHS-NDD-----------  255 (415)
Q Consensus       193 ~~~~~~g~i~~L~~~l~~~~~~--~~~~~a~~~l~~l~~~~-~~~~~~--~~~~~l~~l~~lL~~-~d~-----------  255 (415)
                      ..+.++|++++|+.++......  ..+..|+++|++++... |...+.  ...+++|.|+.+|.. ++.           
T Consensus       492 ~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~  571 (778)
T 3opb_A          492 PQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQI  571 (778)
T ss_dssp             HHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCC
T ss_pred             HHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccc
Confidence            9999999999999999554333  27899999999999653 221111  113899999999983 221           


Q ss_pred             --hHHHHHHHHHHHhccCCh----HHHHHHHHc-CcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCC---
Q 014945          256 --EVLTDACWALSYLSDGTN----DKIQAVIEA-GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQ---  325 (415)
Q Consensus       256 --~v~~~a~~~l~~l~~~~~----~~~~~~~~~-~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~---  325 (415)
                        --..+|+.+|.||+..++    +....++.. |+++.|..+|.+++..++..|+++++|++.+.+...+.+++.+   
T Consensus       572 ~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~  651 (778)
T 3opb_A          572 KLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQ  651 (778)
T ss_dssp             CHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHH
T ss_pred             cHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCch
Confidence              126799999999998762    334557875 9999999999999999999999999999985542212343322   


Q ss_pred             ---ChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHc-CCHHHHHHHhcc--CCHHHHHHHHHHHHHHhC
Q 014945          326 ---ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEA-GIIGPLVNLLLN--AEFEIKKEAAWAISNATS  397 (415)
Q Consensus       326 ---~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~-~~i~~L~~~l~~--~~~~v~~~a~~aL~nl~~  397 (415)
                         .++.|+.++.++ +..+|+.|+|+|+|++.+++...+.+++. ++++.++.++.+  ++++++..++.++.|++.
T Consensus       652 ~~~rL~lLV~Ll~s~-D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          652 SLRNFNILVKLLQLS-DVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE  728 (778)
T ss_dssp             HHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred             hhccHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence               378899999888 99999999999999988788888888876 799999999999  899999999999999996

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.94  E-value=6.1e-25  Score=187.39  Aligned_cols=199  Identities=37%  Similarity=0.533  Sum_probs=181.2

Q ss_pred             hcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCC-CCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHH
Q 014945          197 SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP-QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK  275 (415)
Q Consensus       197 ~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~  275 (415)
                      ..+..+.|+.++ .++++.++..++|+|.+++...+ ........+++|.|+.+|.++++.++..++|+|++++.+++..
T Consensus        10 ~~~~~~~l~~LL-~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~   88 (210)
T 4db6_A           10 HGSELPQMVQQL-NSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ   88 (210)
T ss_dssp             ---CHHHHHHHT-TCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             ccchhHHHHHHh-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence            456788899999 78899999999999999997653 2233444689999999999999999999999999999888888


Q ss_pred             HHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc
Q 014945          276 IQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA  355 (415)
Q Consensus       276 ~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~  355 (415)
                      ...+++.|+++.|+.+|.++++.++..|+++|+|++.+.+.....+++.|+++.|+.++.++ ++.++..|+|+|+|++.
T Consensus        89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~  167 (210)
T 4db6_A           89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIAS  167 (210)
T ss_dssp             HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHc
Confidence            88899999999999999999999999999999999998888888899999999999999998 99999999999999999


Q ss_pred             CCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhC
Q 014945          356 GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  397 (415)
Q Consensus       356 ~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~  397 (415)
                      ++++....+.+.|+++.|+.++.++++++++.|+++|.+++.
T Consensus       168 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            889999999999999999999999999999999999999985

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.93  E-value=1e-24  Score=186.06  Aligned_cols=199  Identities=33%  Similarity=0.526  Sum_probs=181.2

Q ss_pred             hcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchh
Q 014945          112 QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC  191 (415)
Q Consensus       112 ~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~  191 (415)
                      ..|+.+.|+.+|++++ +.++..|+|+|.+++.++++.+..+.+.|+++.|+.+|.++++.++..|+|+|+|++.+++..
T Consensus        10 ~~~~~~~l~~LL~s~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~   88 (210)
T 4db6_A           10 HGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ   88 (210)
T ss_dssp             ---CHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             ccchhHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence            4678899999999998 999999999999999888999999999999999999999999999999999999999888888


Q ss_pred             HHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCC-chhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc
Q 014945          192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD  270 (415)
Q Consensus       192 ~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~  270 (415)
                      +..+.+.|+++.|+.+| .+.++.++..++|+|.+++...+.. ......+++|.|+.++.++++.++..++++|.+++.
T Consensus        89 ~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  167 (210)
T 4db6_A           89 IQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS  167 (210)
T ss_dssp             HHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            99999999999999999 7778999999999999999865322 233447899999999999999999999999999999


Q ss_pred             CChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 014945          271 GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT  312 (415)
Q Consensus       271 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~  312 (415)
                      ..++....+.+.|+++.|+.++.++++.++..|+++|++++.
T Consensus       168 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            878888889999999999999999999999999999999975

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.92  E-value=6.1e-24  Score=188.50  Aligned_cols=188  Identities=18%  Similarity=0.198  Sum_probs=169.8

Q ss_pred             hHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHH
Q 014945          129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQ  207 (415)
Q Consensus       129 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~  207 (415)
                      .+-+..|+..|.+++.. .++...+.+.|++|.|+. +|.++++.+++.|+|+|++++.+++.+++.+++.|++++|+.+
T Consensus        54 ~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           54 QQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence            46788999999999985 667888899999999999 9999999999999999999999999999999999999999999


Q ss_pred             hccchhHhHHHHHHHHHHHhhhCCCC-CchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHH
Q 014945          208 FNEHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCP  286 (415)
Q Consensus       208 l~~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~  286 (415)
                      |..+++..+++.|+|+|++++++.+. .......+++|.|+.+|++++..++..++|+|++++.++++.++.+++.|+++
T Consensus       133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~  212 (296)
T 1xqr_A          133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ  212 (296)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred             HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence            95455789999999999999987633 22333468999999999999999999999999999988888889999999999


Q ss_pred             HHHHhcCCCChhhHHHHHHHHHHhhcCChHH
Q 014945          287 RLVELLRHPSPSVLIPALRTVGNIVTGDDMQ  317 (415)
Q Consensus       287 ~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~  317 (415)
                      .|+.+|.+++..++..++++|++++.+.+..
T Consensus       213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~  243 (296)
T 1xqr_A          213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQG  243 (296)
T ss_dssp             HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCChhHHHHHHHHHHHHHhCChhH
Confidence            9999999999999999999999999986543

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.91  E-value=1.2e-23  Score=186.65  Aligned_cols=188  Identities=14%  Similarity=0.179  Sum_probs=169.1

Q ss_pred             hhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHH-hhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHH
Q 014945          212 AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER-LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE  290 (415)
Q Consensus       212 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~-lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~  290 (415)
                      .+.+-+..|+..|.+++...+........|++|.++. +|.++++.++..|+|+|++++.+++...+.+++.|+++.|+.
T Consensus        52 ~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~  131 (296)
T 1xqr_A           52 ADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR  131 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHH
Confidence            3455677888888888876433333344788999999 999999999999999999999998888888999999999999


Q ss_pred             hcCC-CChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 014945          291 LLRH-PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGI  369 (415)
Q Consensus       291 lL~~-~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~  369 (415)
                      +|.+ ++..++..|+|+|+|++.+++...+.+.+.|+++.|+.+|.++ ++.++..|+|+|++++.++++.+..+++.|+
T Consensus       132 LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~-d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~  210 (296)
T 1xqr_A          132 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM  210 (296)
T ss_dssp             HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHTTH
T ss_pred             HHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCChHHHHHHHHcCC
Confidence            9985 4789999999999999999988888899999999999999998 9999999999999999988899999999999


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHHhCCCC
Q 014945          370 IGPLVNLLLNAEFEIKKEAAWAISNATSGGS  400 (415)
Q Consensus       370 i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~  400 (415)
                      ++.|+.+|.+++++++..|+++|+|++..++
T Consensus       211 i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~  241 (296)
T 1xqr_A          211 VQQLVALVRTEHSPFHEHVLGALCSLVTDFP  241 (296)
T ss_dssp             HHHHHHHHTSCCSTHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCChhHHHHHHHHHHHHHhCCh
Confidence            9999999999999999999999999998843

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.89  E-value=1.8e-22  Score=171.35  Aligned_cols=197  Identities=19%  Similarity=0.141  Sum_probs=170.6

Q ss_pred             chHHHHHhhcCCCCh--HHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhH
Q 014945          115 VVPRFIEFLSRDDFP--QLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR  192 (415)
Q Consensus       115 ~i~~L~~ll~~~~~~--~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~  192 (415)
                      .+|.|+++|++++ +  +++..|+++|.+++.++++.+..+.+.|+||.|+++|.++++.+++.|+|+|.||+.+++..+
T Consensus         9 ~i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A            9 TLERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             CHHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            4899999999988 6  899999999999998888999999999999999999999999999999999999999888899


Q ss_pred             HHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhc----------------CCChh
Q 014945          193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH----------------SNDDE  256 (415)
Q Consensus       193 ~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~----------------~~d~~  256 (415)
                      ..+.+.|++++|+.+|..+.+.++++.++.+|++|+..... ......+.+|.|+.++.                ..+++
T Consensus        88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~-k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~  166 (233)
T 3tt9_A           88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKL-KNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD  166 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGG-HHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred             HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhh-HHHHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence            99999999999999995467889999999999999976433 33344667899988662                13679


Q ss_pred             HHHHHHHHHHHhccCChHHHHHHHHc-CcHHHHHHhcCC------CChhhHHHHHHHHHHhhcC
Q 014945          257 VLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRH------PSPSVLIPALRTVGNIVTG  313 (415)
Q Consensus       257 v~~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~L~~lL~~------~~~~v~~~a~~~l~nl~~~  313 (415)
                      ++.++..+|.||+..+++..+.+.+. |+++.|+.+++.      .+...++.|+.+|.||+..
T Consensus       167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            99999999999998776666777775 778999999863      2567899999999999864

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.89  E-value=2.8e-21  Score=187.80  Aligned_cols=315  Identities=15%  Similarity=0.134  Sum_probs=244.0

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (415)
Q Consensus        72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  151 (415)
                      .++-|.+.+++  ..++..|+..|+++.+..+.. ...+.+  ..+.+.++|.+++ .+.+..|++.|..++.+ ++.++
T Consensus       297 ~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~-~~si~~--La~~~~~~L~~~~-~~~~~~AvEgLaYLSl~-~~VKe  369 (778)
T 3opb_A          297 YLQLLERSLNV--EDVQIYSALVLVKTWSFTKLT-CINLKQ--LSEIFINAISRRI-VPKVEMSVEALAYLSLK-ASVKI  369 (778)
T ss_dssp             HHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCT-TCCHHH--HHHHHHHHTTTCC-HHHHHHHHHHHHHHTTS-SHHHH
T ss_pred             HHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCC-cCcHHH--HHHHHHHHHhcCC-ccHHHHHHHHHHHHhCC-HHHHH
Confidence            34566666654  467888999999987654221 112222  6788899998877 66699999999999986 78887


Q ss_pred             HHHhC-CChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCCch--------------------------------------h
Q 014945          152 VVIDH-GAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPK--------------------------------------C  191 (415)
Q Consensus       152 ~~~~~-g~i~~L~~ll~~-~~~~v~~~a~~~L~nl~~~~~~--------------------------------------~  191 (415)
                      .+.+. |+++.|+.++.+ .+..+...++.+|.|++.+.+.                                      .
T Consensus       370 ~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~  449 (778)
T 3opb_A          370 MIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFN  449 (778)
T ss_dssp             HHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHH
Confidence            77775 669999999995 6778899999999999864331                                      3


Q ss_pred             HHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChh---HHHHHHHHHHHh
Q 014945          192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDE---VLTDACWALSYL  268 (415)
Q Consensus       192 ~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~---v~~~a~~~l~~l  268 (415)
                      +..+.+.|+++.|+.++ .+.++.++..++|+|.+++............|+++.|+.++.+....   ++..|+.+|.++
T Consensus       450 ~~~l~eaGvIp~Lv~Ll-~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArL  528 (778)
T 3opb_A          450 EKYILRTELISFLKREM-HNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRM  528 (778)
T ss_dssp             HHHTTTTTHHHHHHHHG-GGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence            45678899999999999 77889999999999999997755555556689999999999887543   899999999999


Q ss_pred             ccCChHHHHHHHH----cCcHHHHHHhcCC-CCh-------------hhHHHHHHHHHHhhcCCh----HHHHHHHHC-C
Q 014945          269 SDGTNDKIQAVIE----AGVCPRLVELLRH-PSP-------------SVLIPALRTVGNIVTGDD----MQTQCIINH-Q  325 (415)
Q Consensus       269 ~~~~~~~~~~~~~----~~~i~~L~~lL~~-~~~-------------~v~~~a~~~l~nl~~~~~----~~~~~~~~~-~  325 (415)
                      +...+...  ++.    .|+++.|+.+|.. +..             --+..|+.+|+|++..++    +....++.+ |
T Consensus       529 lis~np~~--~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~g  606 (778)
T 3opb_A          529 LIFTNPGL--IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKV  606 (778)
T ss_dssp             HHTSCHHH--HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHH
T ss_pred             HhcCCHHH--HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcC
Confidence            85443221  221    3889999999983 221             126689999999999873    345668886 9


Q ss_pred             ChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHH-HHHHHcC------CHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945          326 ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI-QAIIEAG------IIGPLVNLLLNAEFEIKKEAAWAISNATSG  398 (415)
Q Consensus       326 ~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~-~~l~~~~------~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~  398 (415)
                      +++.|..++.++ +..+|+.|+|+++|++.+ ++.+ +.+.+.+      -++.|+.++..+|+++|.+|+|+|.|++..
T Consensus       607 a~~~L~~LL~s~-n~~VrrAA~elI~NL~~~-~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~  684 (778)
T 3opb_A          607 YWSTIENLMLDE-NVPLQRSTLELISNMMSH-PLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT  684 (778)
T ss_dssp             HHHHHHHGGGCS-SHHHHHHHHHHHHHHHTS-GGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCC-CHHHHHHHHHHHHHHhCC-cHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCC
Confidence            999999999998 899999999999999984 4443 3443222      378999999999999999999999999754

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.87  E-value=1.4e-21  Score=165.92  Aligned_cols=197  Identities=18%  Similarity=0.176  Sum_probs=165.1

Q ss_pred             ccHHHHHHhhcCCCH--HHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCch
Q 014945           71 ESLPAMVAGVWSDDR--NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE  148 (415)
Q Consensus        71 ~~i~~l~~~l~~~~~--~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~  148 (415)
                      ..+|.++++|.++++  +++..|+..+.++.... .++...+++.|++|.|+++|++++ +++|..|+|+|.||+.++++
T Consensus         8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~   85 (233)
T 3tt9_A            8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDND   85 (233)
T ss_dssp             CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHH
T ss_pred             ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHH
Confidence            378999999999988  88999999999986553 566778889999999999999988 99999999999999998899


Q ss_pred             hhHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhcc---------------ch
Q 014945          149 NTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE---------------HA  212 (415)
Q Consensus       149 ~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~---------------~~  212 (415)
                      ++..+.+.|+||.|+++|. +++.+++++|+.+|+||+.... .+..+.+ +++++|+.++..               ..
T Consensus        86 nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~-~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~  163 (233)
T 3tt9_A           86 NKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK-LKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLL  163 (233)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGG-GHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTC
T ss_pred             HHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChh-hHHHHHh-ccHHHHHHHHhccccCCcccccccccccc
Confidence            9999999999999999997 5789999999999999997655 5667766 469999886520               12


Q ss_pred             hHhHHHHHHHHHHHhhhCC-CCCchhh-hhchHHHHHHhhcC------CChhHHHHHHHHHHHhccC
Q 014945          213 KLSMLRNATWTLSNFCRGK-PQPLFEQ-TRPALPALERLIHS------NDDEVLTDACWALSYLSDG  271 (415)
Q Consensus       213 ~~~~~~~a~~~l~~l~~~~-~~~~~~~-~~~~l~~l~~lL~~------~d~~v~~~a~~~l~~l~~~  271 (415)
                      +..++.+++++|.||+... ....... ..|+++.|+.+++.      .+...+++++.+|.||+..
T Consensus       164 ~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          164 DFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            6689999999999999864 2222222 25788999999865      2667899999999999864

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.80  E-value=1e-19  Score=187.01  Aligned_cols=319  Identities=16%  Similarity=0.183  Sum_probs=229.6

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhH-H---HhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCc
Q 014945           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINE-V---IQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS  147 (415)
Q Consensus        72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~-~---~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~  147 (415)
                      -++.+++.+.++++..+..++.+|..+.... .+.... .   .-..++|.|++++++++ +.+|..|+++|..+....+
T Consensus       129 ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~-~~~~~~~~~~~~~~~il~~l~~~l~~~~-~~vR~~A~~aL~~~~~~~~  206 (852)
T 4fdd_A          129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDS-AEILDSDVLDRPLNIMIPKFLQFFKHSS-PKIRSHAVACVNQFIISRT  206 (852)
T ss_dssp             HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHH-TTHHHHCSSSSCHHHHHHHHTTTTTCSS-HHHHHHHHHHHHTTTTTTC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh-HHHhchhhhcchHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhccc
Confidence            5678888888999999999999999886543 111110 0   01246788889999887 9999999999998887544


Q ss_pred             hhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHh
Q 014945          148 ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF  227 (415)
Q Consensus       148 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l  227 (415)
                      ......+ .++++.++.++.++++.++..++++|+.++...+..-...+. ++++.++..+ .+.+..++..+++++..+
T Consensus       207 ~~~~~~~-~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~-~~~~~~vr~~a~e~l~~l  283 (852)
T 4fdd_A          207 QALMLHI-DSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRT-QDQDENVALEACEFWLTL  283 (852)
T ss_dssp             HHHHTSH-HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHH-TCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHc-cCCcHHHHHHHHHHHHHH
Confidence            3211111 246788889999999999999999999999766543221111 3566677777 667888999999999999


Q ss_pred             hhCCCCCc--hhhhhchHHHHHHhh-----------cC-----------CChhHHHHHHHHHHHhccCChHHHHHHHHcC
Q 014945          228 CRGKPQPL--FEQTRPALPALERLI-----------HS-----------NDDEVLTDACWALSYLSDGTNDKIQAVIEAG  283 (415)
Q Consensus       228 ~~~~~~~~--~~~~~~~l~~l~~lL-----------~~-----------~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~  283 (415)
                      +.......  ......++|.++..+           .+           .+..++..+..++..++...++.   ++ ..
T Consensus       284 ~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~-~~  359 (852)
T 4fdd_A          284 AEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LL-PH  359 (852)
T ss_dssp             TTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGG---GH-HH
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH---HH-HH
Confidence            87631111  123346677777776           22           12346888888998887543321   11 23


Q ss_pred             cHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHH
Q 014945          284 VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQA  363 (415)
Q Consensus       284 ~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~  363 (415)
                      +++.+...+.++++.++..|++++|+++.+........+ .++++.++..+.++ ++.||..|+|++++++...+.....
T Consensus       360 l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l-~~~l~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~~~  437 (852)
T 4fdd_A          360 ILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDK-KALVRSITCWTLSRYAHWVVSQPPD  437 (852)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGH-HHHHHHHHHHTTCS-SHHHHHHHHHHHHHTHHHHHHSCTT
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHH-HHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhccchHH
Confidence            678888888999999999999999999998875444322 36789999999998 9999999999999998632221111


Q ss_pred             HHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCH
Q 014945          364 IIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSN  401 (415)
Q Consensus       364 l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~  401 (415)
                      ..-.++++.|+..+.+++++++..|+++|.+++...+.
T Consensus       438 ~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~  475 (852)
T 4fdd_A          438 TYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACT  475 (852)
T ss_dssp             TTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhH
Confidence            11224788899999889999999999999999865443

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.76  E-value=1.5e-15  Score=144.01  Aligned_cols=327  Identities=14%  Similarity=0.182  Sum_probs=246.7

Q ss_pred             ccHHHHHHhhcC--CCHHHHHHHHHHHHHHhccCCCC----------------chhHHH-hcCchHHHHHhhcCCCChHH
Q 014945           71 ESLPAMVAGVWS--DDRNIQLDATTQFRKLLSIERSP----------------PINEVI-QSGVVPRFIEFLSRDDFPQL  131 (415)
Q Consensus        71 ~~i~~l~~~l~~--~~~~~~~~a~~~l~~l~~~~~~~----------------~~~~~~-~~g~i~~L~~ll~~~~~~~i  131 (415)
                      .+++.++..|+.  .|.+....++..|.++++....+                ..+.++ +.+.++.|+.+|++.+ ..+
T Consensus        60 ~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~d-f~v  138 (651)
T 3grl_A           60 QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFD-FHV  138 (651)
T ss_dssp             HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCC-HHH
T ss_pred             hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCcc-HHH
Confidence            478999999985  57888888999999887754221                112333 5678999999999988 899


Q ss_pred             HHHHHHHHHHHhCCCch-hhHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhc
Q 014945          132 QFEAAWALTNIASGTSE-NTRVVID-HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN  209 (415)
Q Consensus       132 ~~~a~~~L~~l~~~~~~-~~~~~~~-~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~  209 (415)
                      |..++.+|..++...++ .++.+.. .++++.|+.+|+++.+.+|..++..|.+|+.+++..++.+.-.|+++.|+.++.
T Consensus       139 R~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~  218 (651)
T 3grl_A          139 RWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT  218 (651)
T ss_dssp             HHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence            99999999999988777 6777775 599999999999999999999999999999999999999999999999999994


Q ss_pred             cch---hHhHHHHHHHHHHHhhhCCC-CCchhhhhchHHHHHHhhcCCChh------HHHH---HHHHHHHhccCC----
Q 014945          210 EHA---KLSMLRNATWTLSNFCRGKP-QPLFEQTRPALPALERLIHSNDDE------VLTD---ACWALSYLSDGT----  272 (415)
Q Consensus       210 ~~~---~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~l~~lL~~~d~~------v~~~---a~~~l~~l~~~~----  272 (415)
                      ...   .-.+...++.++.+|.+.++ ........+++|.|..+|..+++.      ...+   ++.++.-++...    
T Consensus       219 ~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~  298 (651)
T 3grl_A          219 EEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPG  298 (651)
T ss_dssp             HHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHH
T ss_pred             hcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            332   23578999999999999874 333444478899999999754321      3333   555666665432    


Q ss_pred             --hHHHHHHHHcCcHHHHHHhcCCC--ChhhHHHHHHHHHHhhcCChHHHHHHHHCC---------ChHHHHHHhcCCCc
Q 014945          273 --NDKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRTVGNIVTGDDMQTQCIINHQ---------ALPCLLDLLTQNYK  339 (415)
Q Consensus       273 --~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~---------~l~~L~~ll~~~~~  339 (415)
                        ..+...+.+.|+++.|++++...  ...++..|+.+++.++.+++.....+.+..         ++..|+.++.+...
T Consensus       299 ~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~  378 (651)
T 3grl_A          299 ATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQP  378 (651)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSC
T ss_pred             CCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhccccc
Confidence              23445688899999999998765  568999999999999999987766665432         33344555655546


Q ss_pred             cchHHHHHHHHHHHhcCCHHHHHHHHHc----------CCH---HHHHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945          340 KSIKKEACWTISNITAGNVNQIQAIIEA----------GII---GPLVNLLLNAEFEIKKEAAWAISNATSG  398 (415)
Q Consensus       340 ~~v~~~a~~~l~nl~~~~~~~~~~l~~~----------~~i---~~L~~~l~~~~~~v~~~a~~aL~nl~~~  398 (415)
                      ..+|..|+.++..+..++++....++..          +.+   ..+..-+-+.|+--.--|+.+|.++...
T Consensus       379 ~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~  450 (651)
T 3grl_A          379 FVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQE  450 (651)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcC
Confidence            7899999999999999888655555532          011   1234445556664444588888888876

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.76  E-value=6.4e-16  Score=146.58  Aligned_cols=325  Identities=16%  Similarity=0.135  Sum_probs=252.7

Q ss_pred             ccHHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCC-CChHHHHHHHHHHHHHhCCCch
Q 014945           71 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD-DFPQLQFEAAWALTNIASGTSE  148 (415)
Q Consensus        71 ~~i~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~i~~~a~~~L~~l~~~~~~  148 (415)
                      +.|+.|+..+.+ .-.+.+..|+..|+.+...     .+..+-+++++.|+..|+.. ++.++...++.+|.++.....+
T Consensus        21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~-----y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~   95 (651)
T 3grl_A           21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKK-----YRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE   95 (651)
T ss_dssp             HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT-----TTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred             hHHHHHHHHHhhccchhHHHHHHHHHHHHHHH-----hHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence            478899998885 5578999999999998532     23344456799999999864 3478888899999887764432


Q ss_pred             -----------------hhHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCch-hHHHHHhc-CChHHHHHHh
Q 014945          149 -----------------NTRVVI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK-CRDLVLSN-GALMPLLAQF  208 (415)
Q Consensus       149 -----------------~~~~~~-~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~-~~~~~~~~-g~i~~L~~~l  208 (415)
                                       +.+.+. +.+.++.|+.+|++++..++..++.+|..|+...+. .++.+... ++++.|+.+|
T Consensus        96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL  175 (651)
T 3grl_A           96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL  175 (651)
T ss_dssp             ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred             ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence                             222333 457899999999999999999999999999988776 77777754 8999999999


Q ss_pred             ccchhHhHHHHHHHHHHHhhhCCCCCch-hhhhchHHHHHHhhcCCC----hhHHHHHHHHHHHhccCChHHHHHHHHcC
Q 014945          209 NEHAKLSMLRNATWTLSNFCRGKPQPLF-EQTRPALPALERLIHSND----DEVLTDACWALSYLSDGTNDKIQAVIEAG  283 (415)
Q Consensus       209 ~~~~~~~~~~~a~~~l~~l~~~~~~~~~-~~~~~~l~~l~~lL~~~d----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~  283 (415)
                       ++....++..++..|.+|+.+.+..+. ....++++.|+.++..+.    ..+..+++.++.+|..++..+...+.+.|
T Consensus       176 -~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~  254 (651)
T 3grl_A          176 -ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGS  254 (651)
T ss_dssp             -GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             -hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcC
Confidence             777888999999999999998754443 444799999999997654    37889999999999999988878889999


Q ss_pred             cHHHHHHhcCCCChh------hHH---HHHHHHHHhhcCC------hHHHHHHHHCCChHHHHHHhcCCC-ccchHHHHH
Q 014945          284 VCPRLVELLRHPSPS------VLI---PALRTVGNIVTGD------DMQTQCIINHQALPCLLDLLTQNY-KKSIKKEAC  347 (415)
Q Consensus       284 ~i~~L~~lL~~~~~~------v~~---~a~~~l~nl~~~~------~~~~~~~~~~~~l~~L~~ll~~~~-~~~v~~~a~  347 (415)
                      +++.|..+|..+++.      ...   .++.++.-++...      ......+.+.|+++.+++++..+. ...++.+|.
T Consensus       255 ~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al  334 (651)
T 3grl_A          255 YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETI  334 (651)
T ss_dssp             CGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred             CHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHH
Confidence            999999999754321      222   2666777776652      244567789999999999987542 457899999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcC---------CHHHHHHHhcc-CCHHHHHHHHHHHHHHhCCCCH
Q 014945          348 WTISNITAGNVNQIQAIIEAG---------IIGPLVNLLLN-AEFEIKKEAAWAISNATSGGSN  401 (415)
Q Consensus       348 ~~l~nl~~~~~~~~~~l~~~~---------~i~~L~~~l~~-~~~~v~~~a~~aL~nl~~~~~~  401 (415)
                      .+++.++.+++.....+.+..         ++..|+.++.+ ..+++|.+|+.++..+..+.+.
T Consensus       335 ~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~  398 (651)
T 3grl_A          335 NTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQK  398 (651)
T ss_dssp             HHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHH
Confidence            999999999998877776532         23334444544 4589999999999999987543

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.75  E-value=1.9e-16  Score=140.87  Aligned_cols=230  Identities=14%  Similarity=0.151  Sum_probs=184.0

Q ss_pred             hcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchh
Q 014945          112 QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC  191 (415)
Q Consensus       112 ~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~  191 (415)
                      ..+.++.|+..|.+++ +.++..|+++|+++..  +         +.++.|+.++.++++.++..|+++|+.+.......
T Consensus        21 ~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~   88 (280)
T 1oyz_A           21 KKLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE   88 (280)
T ss_dssp             HTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH
T ss_pred             HHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC--c---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc
Confidence            4567999999999988 9999999999999873  1         35888999999999999999999999997543321


Q ss_pred             HHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC
Q 014945          192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG  271 (415)
Q Consensus       192 ~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~  271 (415)
                      ..      .++.|...+..++++.++..++++|.++....+    ......++.+..++.++++.++..++++++++.. 
T Consensus        89 ~~------l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-  157 (280)
T 1oyz_A           89 DN------VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND-  157 (280)
T ss_dssp             HH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---
T ss_pred             hH------HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-
Confidence            11      223343333367788999999999999985432    1234678899999999999999999999998753 


Q ss_pred             ChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHH
Q 014945          272 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS  351 (415)
Q Consensus       272 ~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~  351 (415)
                                .+.++.|+.++.++++.++..++++|+.+....+         .+++.|..++.++ ++.+|..|+++|+
T Consensus       158 ----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~-~~~vR~~A~~aL~  217 (280)
T 1oyz_A          158 ----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-NEEVRIEAIIGLS  217 (280)
T ss_dssp             -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-CHHHHHHHHHHHH
T ss_pred             ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence                      2478999999999999999999999999864333         3467889999988 9999999999999


Q ss_pred             HHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhC
Q 014945          352 NITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  397 (415)
Q Consensus       352 nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~  397 (415)
                      ++..           ...++.|+..+.+++  ++..|+++|+.+..
T Consensus       218 ~~~~-----------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~  250 (280)
T 1oyz_A          218 YRKD-----------KRVLSVLCDELKKNT--VYDDIIEAAGELGD  250 (280)
T ss_dssp             HTTC-----------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC
T ss_pred             HhCC-----------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc
Confidence            9862           237888888887654  88999999999864

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.75  E-value=3.6e-16  Score=139.12  Aligned_cols=255  Identities=15%  Similarity=0.125  Sum_probs=201.1

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh
Q 014945           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  150 (415)
Q Consensus        71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  150 (415)
                      ..++.|+..|.++++.++..|++.|.++..            .+.++.|+.++.+++ +.++..|+++|+.+..... ..
T Consensus        23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~-~~vR~~A~~aL~~l~~~~~-~~   88 (280)
T 1oyz_A           23 LNDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICKK-CE   88 (280)
T ss_dssp             SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCTT-TH
T ss_pred             hhHHHHHHHHHcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCC-HHHHHHHHHHHHHhccccc-cc
Confidence            478999999999999999999999998741            235789999999988 9999999999999875322 11


Q ss_pred             HHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhh
Q 014945          151 RVVIDHGAVPIFV-RLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  229 (415)
Q Consensus       151 ~~~~~~g~i~~L~-~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~  229 (415)
                      .     .+++.|. .++.++++.++..++++|+++....+....     ..++.|+..+ .++++.++..++++|.++..
T Consensus        89 ~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~~  157 (280)
T 1oyz_A           89 D-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITA-FDKSTNVRRATAFAISVIND  157 (280)
T ss_dssp             H-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHT-TCSCHHHHHHHHHHHHTC--
T ss_pred             h-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccH-----HHHHHHHHHh-hCCCHHHHHHHHHHHHhcCC
Confidence            1     1334444 246778999999999999999744332211     2567888888 78899999999999998764


Q ss_pred             CCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHH
Q 014945          230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN  309 (415)
Q Consensus       230 ~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~n  309 (415)
                                ...+|.|..++.++++.++..++++|+.+....+         .+++.|..+|.++++.++..|+++|++
T Consensus       158 ----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~  218 (280)
T 1oyz_A          158 ----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSY  218 (280)
T ss_dssp             -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence                      2478999999999999999999999999854333         246888999999999999999999999


Q ss_pred             hhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHH
Q 014945          310 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEA  388 (415)
Q Consensus       310 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~-~~~~v~~~a  388 (415)
                      +..           ...++.|...+.++ +  ++..|+++|+.+..  +         .+++.|..++.+ .++++...+
T Consensus       219 ~~~-----------~~~~~~L~~~l~d~-~--vr~~a~~aL~~i~~--~---------~~~~~L~~~l~~~~~~~~~~~~  273 (280)
T 1oyz_A          219 RKD-----------KRVLSVLCDELKKN-T--VYDDIIEAAGELGD--K---------TLLPVLDTMLYKFDDNEIITSA  273 (280)
T ss_dssp             TTC-----------GGGHHHHHHHHTSS-S--CCHHHHHHHHHHCC--G---------GGHHHHHHHHTTSSCCHHHHHH
T ss_pred             hCC-----------HhhHHHHHHHhcCc-c--HHHHHHHHHHhcCc--h---------hhhHHHHHHHhcCCCcHHHHHH
Confidence            862           25688899999775 3  89999999999854  2         378889999875 667888888


Q ss_pred             HHHHHH
Q 014945          389 AWAISN  394 (415)
Q Consensus       389 ~~aL~n  394 (415)
                      ..+|.+
T Consensus       274 ~~~l~~  279 (280)
T 1oyz_A          274 IDKLKR  279 (280)
T ss_dssp             HHHHTC
T ss_pred             HHHhhc
Confidence            877753

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.73  E-value=7.2e-17  Score=165.91  Aligned_cols=309  Identities=14%  Similarity=0.172  Sum_probs=230.0

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHH
Q 014945           74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV  153 (415)
Q Consensus        74 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~  153 (415)
                      +.+++.|.+.++.++..++.++..++... .+  ..  -.++++.|++.+.+++ +.++..++.+|+.++...+.....-
T Consensus        93 ~~ll~~l~~~~~~vr~~~a~~i~~ia~~~-~~--~~--wp~ll~~L~~~l~~~~-~~~r~~al~~L~~i~~~~~~~~~~~  166 (852)
T 4fdd_A           93 SECLNNIGDSSPLIRATVGILITTIASKG-EL--QN--WPDLLPKLCSLLDSED-YNTCEGAFGALQKICEDSAEILDSD  166 (852)
T ss_dssp             HHHHTTTTCSSHHHHHHHHHHHHHHHHHT-TT--TT--CTTHHHHHHHHHSCSS-HHHHHHHHHHHHHHHHHHTTHHHHC
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHhc-Cc--cc--cHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhHHHhchh
Confidence            55777788888999999999999998754 11  11  2457899999999988 8999999999999997544332110


Q ss_pred             H----hCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhh
Q 014945          154 I----DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  229 (415)
Q Consensus       154 ~----~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~  229 (415)
                      .    -..+++.+++++.++++.++..|+++++++....+..-... -.+.++.+...+ .+++..++..++++|..++.
T Consensus       167 ~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~-~~~~l~~l~~~~-~d~~~~vr~~a~~~L~~l~~  244 (852)
T 4fdd_A          167 VLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLH-IDSFIENLFALA-GDEEPEVRKNVCRALVMLLE  244 (852)
T ss_dssp             SSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTS-HHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHHH
T ss_pred             hhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHH
Confidence            0    12357788888888999999999999999886544211000 112566777777 67788999999999999998


Q ss_pred             CCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHc---CcHHHHHHhc-----------CC-
Q 014945          230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELL-----------RH-  294 (415)
Q Consensus       230 ~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~i~~L~~lL-----------~~-  294 (415)
                      ..+.........+++.+...+.+.++.++..+++.+..++...... . .+..   .+++.++..+           .+ 
T Consensus       245 ~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~-~-~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~  322 (852)
T 4fdd_A          245 VRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICK-D-VLVRHLPKLIPVLVNGMKYSDIDIILLKGDV  322 (852)
T ss_dssp             HCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHH-H-HHTTTHHHHHHHHHHHTSCCHHHHHHHHC--
T ss_pred             hCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHH-H-HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCc
Confidence            7543333345678888889999999999999999999998654321 1 2211   3456666666           23 


Q ss_pred             ----------CChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHH
Q 014945          295 ----------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI  364 (415)
Q Consensus       295 ----------~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l  364 (415)
                                .++.++..|..+++.++...+..   ++. .+++.+...+.++ ++.+|..|++++++++.+..+.....
T Consensus       323 ~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~~-~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~~  397 (852)
T 4fdd_A          323 EGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LLP-HILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIPY  397 (852)
T ss_dssp             ----------CCCCHHHHHHHHHHHHHHHHGGG---GHH-HHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGGG
T ss_pred             ccccccccccccchHHHHHHHHHHHHHHhccHH---HHH-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHHH
Confidence                      34567899999999998644321   222 4678888888888 99999999999999999877765544


Q ss_pred             HHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945          365 IEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG  398 (415)
Q Consensus       365 ~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~  398 (415)
                      . .++++.++..+.++++.||..|+|++++++..
T Consensus       398 l-~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~  430 (852)
T 4fdd_A          398 L-PELIPHLIQCLSDKKALVRSITCWTLSRYAHW  430 (852)
T ss_dssp             H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHH
T ss_pred             H-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            4 34899999999999999999999999999863

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.67  E-value=1.5e-15  Score=149.60  Aligned_cols=309  Identities=12%  Similarity=0.111  Sum_probs=223.5

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchh-hH
Q 014945           73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN-TR  151 (415)
Q Consensus        73 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~-~~  151 (415)
                      +|.+.+.+.++++.++..++.+|..+....+    .......+++.++.++++++ +.+|..|+++|+.++...... ..
T Consensus       244 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~----~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~~  318 (588)
T 1b3u_A          244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVG----PEITKTDLVPAFQNLMKDCE-AEVRAAASHKVKEFCENLSADCRE  318 (588)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC----HHHHHHTHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHTSCTTTHH
T ss_pred             HHHHHHHccCCCHHHHHHHHHHHHHHHHHhC----cccchhHHHHHHHHHhCCCc-HHHHHHHHHHHHHHHHHhChhhhh
Confidence            4445555566667777777777776653210    11223457889999999887 899999999999988753322 11


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC
Q 014945          152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK  231 (415)
Q Consensus       152 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~  231 (415)
                      ...-..++|.+..++.++++.++..++++|+.++..-+.  +. .....++.+..++ .+.+..++..++.++..++...
T Consensus       319 ~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~--~~-~~~~l~p~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~  394 (588)
T 1b3u_A          319 NVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK--DN-TIEHLLPLFLAQL-KDECPEVRLNIISNLDCVNEVI  394 (588)
T ss_dssp             HHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH--HH-HHHHTHHHHHHHH-TCSCHHHHHHHHTTCHHHHHHS
T ss_pred             hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH--hH-HHHHHHHHHHHHh-CCCchHHHHHHHHHHHHHHHhc
Confidence            122236788999999999999999999999999743221  11 1223677888888 6678889999999999888653


Q ss_pred             CCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhh
Q 014945          232 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV  311 (415)
Q Consensus       232 ~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~  311 (415)
                      .  .......++|.+..++.+.+..++..++.++..++......   +....+++.+..+|.++++.++..|+.+++.++
T Consensus       395 ~--~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~  469 (588)
T 1b3u_A          395 G--IRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLV  469 (588)
T ss_dssp             C--HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG---GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred             C--HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH---HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence            2  11234678899999999889999999999999887421111   111236788889999999999999999999998


Q ss_pred             cCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHH
Q 014945          312 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWA  391 (415)
Q Consensus       312 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~a  391 (415)
                      ......   .....++|.+..++.++ ++.+|..++++++.++......  . ....+++.|...+.++++.||..++++
T Consensus       470 ~~~~~~---~~~~~llp~l~~~~~~~-~~~~R~~a~~~l~~l~~~~~~~--~-~~~~~~~~l~~~l~d~~~~Vr~~a~~~  542 (588)
T 1b3u_A          470 EKFGKE---WAHATIIPKVLAMSGDP-NYLHRMTTLFCINVLSEVCGQD--I-TTKHMLPTVLRMAGDPVANVRFNVAKS  542 (588)
T ss_dssp             HHHCHH---HHHHHTHHHHHHTTTCS-CHHHHHHHHHHHHHHHHHHHHH--H-HHHHTHHHHHHGGGCSCHHHHHHHHHH
T ss_pred             HHhCch---hHHHHHHHHHHHHhhCC-CHHHHHHHHHHHHHHHHhcCHH--H-HHHHHHHHHHhhCCCCCchHHHHHHHH
Confidence            643221   12236788888888887 8999999999999998632221  1 233489999999999999999999999


Q ss_pred             HHHHhCCCCHH
Q 014945          392 ISNATSGGSNE  402 (415)
Q Consensus       392 L~nl~~~~~~~  402 (415)
                      |+.++......
T Consensus       543 l~~l~~~~~~~  553 (588)
T 1b3u_A          543 LQKIGPILDNS  553 (588)
T ss_dssp             HHHHGGGSCHH
T ss_pred             HHHHHHHhchh
Confidence            99998754443

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.67  E-value=2.2e-15  Score=148.38  Aligned_cols=304  Identities=13%  Similarity=0.101  Sum_probs=228.1

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (415)
Q Consensus        72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  151 (415)
                      .++.+++.++++++.++..|+..+..+...-............++|.+..++++++ +.+|..++++|+.++..-..  .
T Consensus       282 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~-~~vR~~a~~~l~~l~~~~~~--~  358 (588)
T 1b3u_A          282 LVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDAN-QHVKSALASVIMGLSPILGK--D  358 (588)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSC-HHHHHHHHTTGGGGHHHHCH--H
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhhH--h
Confidence            46778888888999999999999998876432221111223457899999999988 99999999999988752111  1


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC
Q 014945          152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK  231 (415)
Q Consensus       152 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~  231 (415)
                       .....++|.+..++.++++.++..++.+++.+......  +. .....++.+..++ .+.+..++..++.++..++..-
T Consensus       359 -~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~--~~-~~~~~lp~l~~~~-~d~~~~vr~~~~~~l~~l~~~~  433 (588)
T 1b3u_A          359 -NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI--RQ-LSQSLLPAIVELA-EDAKWRVRLAIIEYMPLLAGQL  433 (588)
T ss_dssp             -HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH--HH-HHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH--HH-HHHHHHHHHHHHh-cCCCchHHHHHHHHHHHHHHHc
Confidence             11234788999999999999999999999988753321  11 1223667777777 6778889999999999988643


Q ss_pred             CCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhh
Q 014945          232 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV  311 (415)
Q Consensus       232 ~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~  311 (415)
                      +..  .....++|.+..++.+++..++..++.+++.++......   .....+++.+..++.++++.+|..++++++.++
T Consensus       434 ~~~--~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~  508 (588)
T 1b3u_A          434 GVE--FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE---WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLS  508 (588)
T ss_dssp             CGG--GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH---HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHH
T ss_pred             CHH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch---hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence            211  122467899999999999999999999999987543221   123457888998888899999999999999998


Q ss_pred             cCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHH
Q 014945          312 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAW  390 (415)
Q Consensus       312 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~  390 (415)
                      .....   ......++|.+..++.++ ++.||..++++++.++.. .++    .....++|.|..++.+.|+++|..|++
T Consensus       509 ~~~~~---~~~~~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~----~~~~~~~p~l~~l~~d~d~~vr~~a~~  580 (588)
T 1b3u_A          509 EVCGQ---DITTKHMLPTVLRMAGDP-VANVRFNVAKSLQKIGPILDNS----TLQSEVKPILEKLTQDQDVDVKYFAQE  580 (588)
T ss_dssp             HHHHH---HHHHHHTHHHHHHGGGCS-CHHHHHHHHHHHHHHGGGSCHH----HHHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred             HhcCH---HHHHHHHHHHHHhhCCCC-CchHHHHHHHHHHHHHHHhchh----hhHHHHHHHHHHHcCCCchhHHHHHHH
Confidence            64321   123346889999999988 999999999999999963 222    122346788888888899999999999


Q ss_pred             HHHHHh
Q 014945          391 AISNAT  396 (415)
Q Consensus       391 aL~nl~  396 (415)
                      ++..+.
T Consensus       581 al~~l~  586 (588)
T 1b3u_A          581 ALTVLS  586 (588)
T ss_dssp             HHHHTT
T ss_pred             HHHHhh
Confidence            998875

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.65  E-value=2e-15  Score=148.34  Aligned_cols=224  Identities=18%  Similarity=0.163  Sum_probs=160.3

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (415)
Q Consensus        72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  151 (415)
                      .++.+.+.|+++|+.++..|+..+.++..   .+..+     .+++.+.+++.+++ +.+|..|++++.++...+++...
T Consensus        87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~~---~~~~~-----~l~~~l~~~L~d~~-~~VRk~A~~al~~i~~~~p~~~~  157 (591)
T 2vgl_B           87 AVNSFVKDCEDPNPLIRALAVRTMGCIRV---DKITE-----YLCEPLRKCLKDED-PYVRKTAAVCVAKLHDINAQMVE  157 (591)
T ss_dssp             THHHHGGGSSSSSHHHHHHHHHHHHTCCS---GGGHH-----HHHHHHHHHSSCSC-HHHHHHHHHHHHHHHHSSCCCHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHcCCh---HHHHH-----HHHHHHHHHcCCCC-hHHHHHHHHHHHHHHhhChhhcc
Confidence            34556666777788788777777766531   11111     24678999999888 99999999999999987666432


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC
Q 014945          152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK  231 (415)
Q Consensus       152 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~  231 (415)
                         +.+.++.+..+|.++++.++..|+++|+.++.+++.........+.+..|+..+ .+.++..+..++.++..++.. 
T Consensus       158 ---~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l-~~~~~~~q~~il~~l~~l~~~-  232 (591)
T 2vgl_B          158 ---DQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL-NECTEWGQIFILDCLSNYNPK-  232 (591)
T ss_dssp             ---HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHTSCCC-
T ss_pred             ---cccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcC-CCCCchHHHHHHHHHHHhCCC-
Confidence               246789999999999999999999999999987763210111112456677777 455666777777777777632 


Q ss_pred             CCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC---ChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHH
Q 014945          232 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG  308 (415)
Q Consensus       232 ~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~  308 (415)
                         .......+++.+..++++.++.|+..|++++.++...   +++..+.+. ..+.+.|+.++. +++.++..|+.+|+
T Consensus       233 ---~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~  307 (591)
T 2vgl_B          233 ---DDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNIN  307 (591)
T ss_dssp             ---SHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHH
T ss_pred             ---ChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHH
Confidence               2233467889999999999999999999999998742   233333322 345677776654 77889999999999


Q ss_pred             HhhcCC
Q 014945          309 NIVTGD  314 (415)
Q Consensus       309 nl~~~~  314 (415)
                      .++...
T Consensus       308 ~i~~~~  313 (591)
T 2vgl_B          308 LIVQKR  313 (591)
T ss_dssp             HHHHHC
T ss_pred             HHHHhC
Confidence            887643

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.62  E-value=2.9e-15  Score=142.92  Aligned_cols=310  Identities=13%  Similarity=0.097  Sum_probs=215.9

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCC--CChHHHHHHHHHHHHHhCCC-chhh
Q 014945           74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD--DFPQLQFEAAWALTNIASGT-SENT  150 (415)
Q Consensus        74 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~i~~~a~~~L~~l~~~~-~~~~  150 (415)
                      ..++..+.++++.+ ..++.++..++... .+ ..  .-.+++|.|++.+.++  + +.++..++.+|+.++... ++..
T Consensus        93 ~~ll~~l~~~~~~v-~~~~~~i~~ia~~~-~~-~~--~w~~ll~~L~~~l~~~~~~-~~~r~~al~~l~~l~~~~~~~~~  166 (462)
T 1ibr_B           93 NYVLQTLGTETYRP-SSASQCVAGIACAE-IP-VN--QWPELIPQLVANVTNPNST-EHMKESTLEAIGYICQDIDPEQL  166 (462)
T ss_dssp             HHHHHHTTCCCSSS-CSHHHHHHHHHHHH-GG-GT--CCTTHHHHHHHHHHCTTCC-HHHHHHHHHHHHHHHHHSCGGGT
T ss_pred             HHHHHHhCCCCchh-hHHHHHHHHHHHHh-cc-cc--ccHHHHHHHHHHhccCCCC-HHHHHHHHHHHHHHHHhCCchhh
Confidence            34667777766666 66777777776542 11 10  1246899999999988  6 899999999999998743 2221


Q ss_pred             HHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhcCCCchhH-HHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHh
Q 014945          151 RVVIDHGAVPIFVRLLSSP--TDDVREQAVWALGNVAGDSPKCR-DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF  227 (415)
Q Consensus       151 ~~~~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~nl~~~~~~~~-~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l  227 (415)
                      .... ..+++.+..++.++  ++.++..|+++++++...-...- ......-.++.+...+ .+.+..++..+++++..+
T Consensus       167 ~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~vr~~~~~~l~~l  244 (462)
T 1ibr_B          167 QDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT-QCPDTRVRVAALQNLVKI  244 (462)
T ss_dssp             GGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHH
T ss_pred             HhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHH
Confidence            1111 14678888899887  79999999999999764322110 0000111244444445 667889999999999999


Q ss_pred             hhCCCCCchhhhh-chHHHHHHhhcCCChhHHHHHHHHHHHhccCChH---------------------HHHHHHHcCcH
Q 014945          228 CRGKPQPLFEQTR-PALPALERLIHSNDDEVLTDACWALSYLSDGTND---------------------KIQAVIEAGVC  285 (415)
Q Consensus       228 ~~~~~~~~~~~~~-~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~---------------------~~~~~~~~~~i  285 (415)
                      +...+..-..... .+++.+...+.+.++.++..+++.+..++.....                     .....+ ..++
T Consensus       245 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~  323 (462)
T 1ibr_B          245 MSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLV  323 (462)
T ss_dssp             HHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHH-HHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHh-hhcc
Confidence            9765432223345 7888888888889999999999998888753210                     111011 2356


Q ss_pred             HHHHHhcCC-------CChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCH
Q 014945          286 PRLVELLRH-------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV  358 (415)
Q Consensus       286 ~~L~~lL~~-------~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~  358 (415)
                      +.++..+..       .++.++..|+.+|+.++...+.   .++ ..+++.+...+.++ ++.+|..|+++++.++.+..
T Consensus       324 p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~-~~~~~~l~~~l~~~-~~~~r~aal~~l~~l~~~~~  398 (462)
T 1ibr_B          324 PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV-PHVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPE  398 (462)
T ss_dssp             HHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THH-HHHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSC
T ss_pred             HHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---HHH-HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHhcCCc
Confidence            667777743       3467899999999999875442   122 25677888888888 99999999999999998643


Q ss_pred             -HHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945          359 -NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG  398 (415)
Q Consensus       359 -~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~  398 (415)
                       +.....+ ..+++.++..+.++++.||..|+|+|++++..
T Consensus       399 ~~~~~~~l-~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~  438 (462)
T 1ibr_B          399 PSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL  438 (462)
T ss_dssp             TTTTCTTT-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence             2222222 45899999999999999999999999999864

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.61  E-value=3e-14  Score=146.96  Aligned_cols=317  Identities=16%  Similarity=0.220  Sum_probs=221.8

Q ss_pred             cHHHHHHhhcCC--CHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCC-ChHHHHHHHHHHHHHhCCCch
Q 014945           72 SLPAMVAGVWSD--DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSE  148 (415)
Q Consensus        72 ~i~~l~~~l~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~~i~~~a~~~L~~l~~~~~~  148 (415)
                      .++.+++.+.++  ++..+..++.++..+...-..+.... .-..+++.+.+.+.+++ +..+|..|+++++.++..-..
T Consensus       129 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~-~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~  207 (876)
T 1qgr_A          129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQD-KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  207 (876)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGG-GHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHH
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHh-HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            467788888888  89999999999998875321111111 12346778888888762 389999999999998753221


Q ss_pred             hh-HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHh
Q 014945          149 NT-RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF  227 (415)
Q Consensus       149 ~~-~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l  227 (415)
                      .. .......+++.+...+.+++..++..++.+|..++...+..-...+...+++.++..+ .+.+..++..+++++..+
T Consensus       208 ~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~v~~~al~~l~~l  286 (876)
T 1qgr_A          208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM-KSDIDEVALQGIEFWSNV  286 (876)
T ss_dssp             HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHH-TCSSHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHH
Confidence            11 0011112577778888888999999999999999865543322233335677777766 566788999999999888


Q ss_pred             hhCC-------------------CCCch--hhhhchHHHHHHhhcC-------CChhHHHHHHHHHHHhccCChHHHHHH
Q 014945          228 CRGK-------------------PQPLF--EQTRPALPALERLIHS-------NDDEVLTDACWALSYLSDGTNDKIQAV  279 (415)
Q Consensus       228 ~~~~-------------------~~~~~--~~~~~~l~~l~~lL~~-------~d~~v~~~a~~~l~~l~~~~~~~~~~~  279 (415)
                      +...                   +....  .....++|.++..+..       ++..++..+..++..++....+.   +
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~---~  363 (876)
T 1qgr_A          287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---I  363 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG---G
T ss_pred             HHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHh---h
Confidence            7641                   01111  1235667778877752       34678999999998887543321   1


Q ss_pred             HHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh-HHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCH
Q 014945          280 IEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD-MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV  358 (415)
Q Consensus       280 ~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~  358 (415)
                      + ..+++.+...+.++++.++..+++++|.++.+.. ......+ .++++.++..+.++ ++.+|..|+|++++++...+
T Consensus       364 ~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~  440 (876)
T 1qgr_A          364 V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDP-SVVVRDTAAWTVGRICELLP  440 (876)
T ss_dssp             H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCG
T ss_pred             H-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhCc
Confidence            2 2466778888889999999999999999998765 3333333 35889999999988 99999999999999997433


Q ss_pred             HHH--HHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945          359 NQI--QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG  398 (415)
Q Consensus       359 ~~~--~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~  398 (415)
                      ...  ...+ ..+++.|+..+.++ +.++..|+|+|.+++..
T Consensus       441 ~~~~~~~~l-~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~  480 (876)
T 1qgr_A          441 EAAINDVYL-APLLQCLIEGLSAE-PRVASNVCWAFSSLAEA  480 (876)
T ss_dssp             GGTSSTTTH-HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred             hhcccHHHH-HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence            211  1111 23677888888774 89999999999999853

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.61  E-value=3.3e-14  Score=139.67  Aligned_cols=296  Identities=18%  Similarity=0.181  Sum_probs=213.1

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh
Q 014945           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  150 (415)
Q Consensus        71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  150 (415)
                      +.+..+.+.|++++...+..++.-+..+.... .+.      +.+++.+++++.+++ ..++..+...+.+++..+++..
T Consensus        13 ~e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G-~d~------~~~~~~vi~l~~s~~-~~~Krl~yl~l~~~~~~~~e~~   84 (591)
T 2vgl_B           13 GEIFELKAELNNEKKEKRKEAVKKVIAAMTVG-KDV------SSLFPDVVNCMQTDN-LELKKLVYLYLMNYAKSQPDMA   84 (591)
T ss_dssp             SHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTT-CCC------GGGHHHHHHTTSSSC-HHHHHHHHHHHHHHHHHSHHHH
T ss_pred             ChHHHHHHHHcCCCHHHHHHHHHHHHHHHHCC-CCh------HHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccCchHH
Confidence            56788899999999888888776665554433 222      224677888999888 8999998888888877544432


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhC
Q 014945          151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  230 (415)
Q Consensus       151 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~  230 (415)
                      .     -+++.+.+-|.++++.++..|+.+|+++.  .+.....     .++.+..++ .+.++.+++.|++++..++..
T Consensus        85 ~-----l~~n~l~kdL~~~n~~ir~~AL~~L~~i~--~~~~~~~-----l~~~l~~~L-~d~~~~VRk~A~~al~~i~~~  151 (591)
T 2vgl_B           85 I-----MAVNSFVKDCEDPNPLIRALAVRTMGCIR--VDKITEY-----LCEPLRKCL-KDEDPYVRKTAAVCVAKLHDI  151 (591)
T ss_dssp             H-----TTHHHHGGGSSSSSHHHHHHHHHHHHTCC--SGGGHHH-----HHHHHHHHS-SCSCHHHHHHHHHHHHHHHHS
T ss_pred             H-----HHHHHHHHHcCCCCHHHHHHHHHHHHcCC--hHHHHHH-----HHHHHHHHc-CCCChHHHHHHHHHHHHHHhh
Confidence            1     24678888899999999999999999996  3322222     456788888 788999999999999999986


Q ss_pred             CCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHh
Q 014945          231 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI  310 (415)
Q Consensus       231 ~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl  310 (415)
                      .+...  ...+.+|.+..+|.++|+.|+..|++++..++...++.....+..+.+..|+..+.+.++..+...+++++.+
T Consensus       152 ~p~~~--~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l  229 (591)
T 2vgl_B          152 NAQMV--EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNY  229 (591)
T ss_dssp             SCCCH--HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTS
T ss_pred             Chhhc--ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHh
Confidence            54322  2247889999999999999999999999999876542200001123466777777777888888999999998


Q ss_pred             hcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcC---CHHHHHHHHHcCCHHHHHHHhccCCHHHHHH
Q 014945          311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG---NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKE  387 (415)
Q Consensus       311 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~---~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~  387 (415)
                      +..++....     .+++.+..++++. ++.|+.+|++++..+...   +++..+.+.. .+.+.|+.++. +++.+|..
T Consensus       230 ~~~~~~~~~-----~~l~~l~~~l~~~-~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~-~~~~~L~~L~~-~d~~vr~~  301 (591)
T 2vgl_B          230 NPKDDREAQ-----SICERVTPRLSHA-NSAVVLSAVKVLMKFLELLPKDSDYYNMLLK-KLAPPLVTLLS-GEPEVQYV  301 (591)
T ss_dssp             CCCSHHHHH-----HHHHHHTTCSCSS-TTHHHHHHHHHHHHSCCSCCBTTBSHHHHHH-HTHHHHHHHTT-SCHHHHHH
T ss_pred             CCCChHHHH-----HHHHHHHHHHcCC-ChHHHHHHHHHHHHHhhccCCCHHHHHHHHH-HHHHHHHHHhc-CCccHHHH
Confidence            866554333     4577888888988 999999999999998742   3333333332 25556655443 56666666


Q ss_pred             HHHHHHHHhC
Q 014945          388 AAWAISNATS  397 (415)
Q Consensus       388 a~~aL~nl~~  397 (415)
                      |+.+|..+..
T Consensus       302 aL~~l~~i~~  311 (591)
T 2vgl_B          302 ALRNINLIVQ  311 (591)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6666666653

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.60  E-value=5.9e-14  Score=119.17  Aligned_cols=189  Identities=20%  Similarity=0.229  Sum_probs=158.4

Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCc
Q 014945          156 HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL  235 (415)
Q Consensus       156 ~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~  235 (415)
                      .+.++.|+.+|.++++.++..|+++|+.+..           .+.++.|+..+ .+.+..++..++++|..+..      
T Consensus        18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~------   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD------   79 (211)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSCHHHHHHHHHHHHHHCC------
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC------
Confidence            3578999999999999999999999998753           23678899999 67789999999999998853      


Q ss_pred             hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh
Q 014945          236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD  315 (415)
Q Consensus       236 ~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~  315 (415)
                          ...++.|..+|.++++.++..++++|+.+..           .+.++.|..+|.++++.++..++++|+++..  +
T Consensus        80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~  142 (211)
T 3ltm_A           80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--E  142 (211)
T ss_dssp             ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--H
Confidence                3678999999999999999999999998853           2467889999999999999999999999853  2


Q ss_pred             HHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHH
Q 014945          316 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA  395 (415)
Q Consensus       316 ~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl  395 (415)
                               ..++.|..++.++ ++.+|..|+++|+.+..  +.         .++.|..++.++++.||..|.++|.++
T Consensus       143 ---------~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~--~~---------~~~~L~~~l~d~~~~vr~~A~~aL~~~  201 (211)
T 3ltm_A          143 ---------RAVEPLIKALKDE-DGWVRQSAADALGEIGG--ER---------VRAAMEKLAETGTGFARKVAVNYLETH  201 (211)
T ss_dssp             ---------GGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS--HH---------HHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred             ---------HHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc--hh---------HHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence                     4678899999888 99999999999999953  22         577888889999999999999999999


Q ss_pred             hCCCC
Q 014945          396 TSGGS  400 (415)
Q Consensus       396 ~~~~~  400 (415)
                      .....
T Consensus       202 ~~~~~  206 (211)
T 3ltm_A          202 KSFNH  206 (211)
T ss_dssp             -----
T ss_pred             CCCCC
Confidence            86644

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.60  E-value=1.2e-13  Score=116.33  Aligned_cols=185  Identities=21%  Similarity=0.241  Sum_probs=158.4

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCch
Q 014945          157 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF  236 (415)
Q Consensus       157 g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~  236 (415)
                      +..+.++.+|.++++.++..|+++|+.+..           .+.++.|+..+ .+.++.++..++++|..+..       
T Consensus        14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~~L~~~~~-------   74 (201)
T 3ltj_A           14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD-------   74 (201)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-------
T ss_pred             cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC-------
Confidence            457899999999999999999999998753           13678899999 77889999999999998753       


Q ss_pred             hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChH
Q 014945          237 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM  316 (415)
Q Consensus       237 ~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~  316 (415)
                         ...++.|..+|.++++.++..++++|+.+..           ...++.|..+|.++++.++..++++|+.+..    
T Consensus        75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----  136 (201)
T 3ltj_A           75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----  136 (201)
T ss_dssp             ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred             ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence               2578999999999999999999999998753           2367889999999999999999999999853    


Q ss_pred             HHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHh
Q 014945          317 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT  396 (415)
Q Consensus       317 ~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~  396 (415)
                             ...++.|..++.++ ++.+|..|+++|+.+.  .++         .++.|..++.++++.++..|.++|.++-
T Consensus       137 -------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~--~~~---------~~~~L~~~l~d~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          137 -------ERAVEPLIKALKDE-DGWVRQSAADALGEIG--GER---------VRAAMEKLAETGTGFARKVAVNYLETHK  197 (201)
T ss_dssp             -------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC--SHH---------HHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred             -------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC--chh---------HHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence                   24678899999988 9999999999999994  333         5678888899999999999999999875


Q ss_pred             C
Q 014945          397 S  397 (415)
Q Consensus       397 ~  397 (415)
                      .
T Consensus       198 ~  198 (201)
T 3ltj_A          198 S  198 (201)
T ss_dssp             -
T ss_pred             h
Confidence            3

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.60  E-value=1.6e-13  Score=135.35  Aligned_cols=293  Identities=18%  Similarity=0.146  Sum_probs=195.0

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (415)
Q Consensus        72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  151 (415)
                      ....+++.+.+++...+..+...+..++..+    -+..+  -+++.|.+-|++++ +.++..|+++|+++..  ++...
T Consensus        71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~----~e~~~--l~in~l~kDL~~~n-~~vr~lAL~~L~~i~~--~~~~~  141 (618)
T 1w63_A           71 GQLECLKLIASQKFTDKRIGYLGAMLLLDER----QDVHL--LMTNCIKNDLNHST-QFVQGLALCTLGCMGS--SEMCR  141 (618)
T ss_dssp             GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCC----HHHHH--HHHHHHHHHHSCSS-SHHHHHHHHHHHHHCC--HHHHH
T ss_pred             hHHHHHHHHcCCchHHHHHHHHHHHHHhCCC----cHHHH--HHHHHHHHhcCCCC-HhHHHHHHHHHHhcCC--HHHHH
Confidence            5678888899999999988888888876422    12111  14788888999888 8999999999999985  33222


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC
Q 014945          152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK  231 (415)
Q Consensus       152 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~  231 (415)
                           .+++.+..++.++++.++..|+.+++++....|+..     .+.++.+..++ .+.++.++..|++++..++...
T Consensus       142 -----~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL-~D~d~~V~~~Al~~L~~i~~~~  210 (618)
T 1w63_A          142 -----DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLL-NEKNHGVLHTSVVLLTEMCERS  210 (618)
T ss_dssp             -----HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTST-TCCCHHHHHHHHHHHHHHCCSH
T ss_pred             -----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHh-CCCCHhHHHHHHHHHHHHHHhC
Confidence                 457888899999999999999999999987666432     24667777777 6788999999999999998653


Q ss_pred             CCCchhhhhchHHHHHHhhcC---------------CChhHHHHHHHHHHHhccCChHHHHHHH----------------
Q 014945          232 PQPLFEQTRPALPALERLIHS---------------NDDEVLTDACWALSYLSDGTNDKIQAVI----------------  280 (415)
Q Consensus       232 ~~~~~~~~~~~l~~l~~lL~~---------------~d~~v~~~a~~~l~~l~~~~~~~~~~~~----------------  280 (415)
                      +.. .......+|.++.+|.+               .++..+..++.+++.++..++.....+.                
T Consensus       211 ~~~-~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~  289 (618)
T 1w63_A          211 PDM-LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNV  289 (618)
T ss_dssp             HHH-HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTH
T ss_pred             hHH-HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccch
Confidence            221 12334566666665542               3677777777777777765433211000                


Q ss_pred             ---------------------HcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCc
Q 014945          281 ---------------------EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYK  339 (415)
Q Consensus       281 ---------------------~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~  339 (415)
                                           ...+++.|..+|.+.++.++..|+.+|+.++...+..    +. ...+.++.++.++ +
T Consensus       290 ~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~----~~-~~~~~i~~~l~d~-d  363 (618)
T 1w63_A          290 GNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNA----VQ-RHRSTIVDCLKDL-D  363 (618)
T ss_dssp             HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHH----HG-GGHHHHHHGGGSS-C
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHH----HH-HHHHHHHHHccCC-C
Confidence                                 0013455555666666666666666666666543321    11 2445666666666 6


Q ss_pred             cchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945          340 KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG  398 (415)
Q Consensus       340 ~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~  398 (415)
                      ..+|..|..++..++...  ++..     +++.|...+.+.+.+++..++.+++.++..
T Consensus       364 ~~Ir~~alelL~~l~~~~--nv~~-----iv~eL~~~l~~~d~e~r~~~v~~I~~la~k  415 (618)
T 1w63_A          364 VSIKRRAMELSFALVNGN--NIRG-----MMKELLYFLDSCEPEFKADCASGIFLAAEK  415 (618)
T ss_dssp             HHHHHHHHHHHHHHCCSS--STHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHS
T ss_pred             hhHHHHHHHHHHHHcccc--cHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            677777777777776531  1111     345566666667777777777777777754

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.57  E-value=1.4e-14  Score=149.04  Aligned_cols=324  Identities=13%  Similarity=0.152  Sum_probs=222.0

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh--H
Q 014945           74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT--R  151 (415)
Q Consensus        74 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~--~  151 (415)
                      +.+.+.+.+.++..+..|+.++..++...........+. .+++.++..+.+++ +.+|..++|+++.++.......  .
T Consensus       372 ~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~  449 (861)
T 2bpt_A          372 EFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQS-LQVKETTAWCIGRIADSVAESIDPQ  449 (861)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGGGSCTT
T ss_pred             HHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHhhhhcCCH
Confidence            445556678889999999999999875421122222222 47889999999888 9999999999999886321100  0


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC-----chhHHHHHhcCChHHHHHHhcc-chhHhHHHHHHHHHH
Q 014945          152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-----PKCRDLVLSNGALMPLLAQFNE-HAKLSMLRNATWTLS  225 (415)
Q Consensus       152 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~-----~~~~~~~~~~g~i~~L~~~l~~-~~~~~~~~~a~~~l~  225 (415)
                      .. -..+++.++..+.++ +.++..|++++.+++...     ......+  ..+++.|+..+.. +.+..++..++.++.
T Consensus       450 ~~-~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al~  525 (861)
T 2bpt_A          450 QH-LPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALT  525 (861)
T ss_dssp             TT-HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHHH
Confidence            00 114578888888775 899999999999987431     1121111  1246677777743 334789999999999


Q ss_pred             HhhhCCCCCchhhhhchHHHHHHhhcCC---------------ChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHH
Q 014945          226 NFCRGKPQPLFEQTRPALPALERLIHSN---------------DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE  290 (415)
Q Consensus       226 ~l~~~~~~~~~~~~~~~l~~l~~lL~~~---------------d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~  290 (415)
                      .++...+.........++|.++..+...               ...++..++.++..++........... ..+++.+..
T Consensus       526 ~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~  604 (861)
T 2bpt_A          526 TMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFR  604 (861)
T ss_dssp             HHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHH
T ss_pred             HHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHH
Confidence            9998765444444566777777666421               345778899999988865443222122 246778888


Q ss_pred             hcCCCCh-hhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 014945          291 LLRHPSP-SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGI  369 (415)
Q Consensus       291 lL~~~~~-~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~  369 (415)
                      .+.+.+. .++..++.+++.++..........+. .++|.+...+.++ ++.++..++++++.++....+.....+. .+
T Consensus       605 ~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~l  681 (861)
T 2bpt_A          605 LLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYSD-AM  681 (861)
T ss_dssp             HHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHHH-HH
T ss_pred             HHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHhchhccchHH-HH
Confidence            8877766 89999999999998654333322232 4788899999777 8899999999999998643333333333 37


Q ss_pred             HHHHHHHhccCC--HHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014945          370 IGPLVNLLLNAE--FEIKKEAAWAISNATSGGSNEQIKYK  407 (415)
Q Consensus       370 i~~L~~~l~~~~--~~v~~~a~~aL~nl~~~~~~~~~~~l  407 (415)
                      ++.++..+.+++  ++++..++.+++.++...+.....|+
T Consensus       682 ~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l  721 (861)
T 2bpt_A          682 MNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYL  721 (861)
T ss_dssp             HHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred             HHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHH
Confidence            888888888754  88999999999999875444443433

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.57  E-value=1.5e-13  Score=116.62  Aligned_cols=187  Identities=21%  Similarity=0.220  Sum_probs=158.2

Q ss_pred             cCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhH
Q 014945          113 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR  192 (415)
Q Consensus       113 ~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~  192 (415)
                      .+.++.|+.+|++++ +.++..|++.|+.+..           .+.++.|+.++.++++.++..++++|+.+..      
T Consensus        18 ~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------   79 (211)
T ss_dssp             GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred             HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence            457899999999888 9999999999998764           2578999999999999999999999999852      


Q ss_pred             HHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 014945          193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT  272 (415)
Q Consensus       193 ~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~  272 (415)
                           .+.++.|+..+ .++++.++..++++|..+..          ...++.|..++.++++.++..++++|+.+..  
T Consensus        80 -----~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--  141 (211)
T 3ltm_A           80 -----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--  141 (211)
T ss_dssp             -----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred             -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence                 23678888888 77889999999999998853          3578999999999999999999999999853  


Q ss_pred             hHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHH
Q 014945          273 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN  352 (415)
Q Consensus       273 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~n  352 (415)
                               ...++.|..++.++++.++..++.+|+.+..  +         ..++.|..++.++ ++.||..|..+|.+
T Consensus       142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l~d~-~~~vr~~A~~aL~~  200 (211)
T 3ltm_A          142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETG-TGFARKVAVNYLET  200 (211)
T ss_dssp             ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHC-CHHHHHHHHHHHHC
T ss_pred             ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCC-CHHHHHHHHHHHHh
Confidence                     2367889999999999999999999999853  2         3467888999888 99999999999999


Q ss_pred             HhcC
Q 014945          353 ITAG  356 (415)
Q Consensus       353 l~~~  356 (415)
                      +...
T Consensus       201 ~~~~  204 (211)
T 3ltm_A          201 HKSF  204 (211)
T ss_dssp             ----
T ss_pred             cCCC
Confidence            9874

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.57  E-value=8.9e-14  Score=143.13  Aligned_cols=318  Identities=16%  Similarity=0.166  Sum_probs=220.0

Q ss_pred             HHHHHHhhcCC--CHHHHHHHHHHHHHHhccCCCCchh-HHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchh
Q 014945           73 LPAMVAGVWSD--DRNIQLDATTQFRKLLSIERSPPIN-EVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  149 (415)
Q Consensus        73 i~~l~~~l~~~--~~~~~~~a~~~l~~l~~~~~~~~~~-~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  149 (415)
                      ++.+...+.++  ++.++..|+.++..++..- ..... ......+++.|...+.+++ +.++..++.+|..++...++.
T Consensus       181 l~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~-~~~~~~~~~~~~ll~~l~~~~~~~~-~~~r~~a~~~l~~l~~~~~~~  258 (861)
T 2bpt_A          181 LIAIVQGAQSTETSKAVRLAALNALADSLIFI-KNNMEREGERNYLMQVVCEATQAED-IEVQAAAFGCLCKIMSKYYTF  258 (861)
T ss_dssp             HHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGC-HHHHTSHHHHHHHHHHHHHHHTCSC-HHHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH-HHHccChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHH
Confidence            45556666766  7899999999998875321 01100 0111235777778888877 899999999999998754443


Q ss_pred             hHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCch-----------------hHHHHHhcCChHHHHHHhccc-
Q 014945          150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK-----------------CRDLVLSNGALMPLLAQFNEH-  211 (415)
Q Consensus       150 ~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~-----------------~~~~~~~~g~i~~L~~~l~~~-  211 (415)
                      ....+...+++.+...+.+.++.++..++.++..++.....                 .-.... ...++.++..+... 
T Consensus       259 ~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~  337 (861)
T 2bpt_A          259 MKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQN  337 (861)
T ss_dssp             CHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcc
Confidence            33333325677888888888999999999999988754211                 101111 23566777777431 


Q ss_pred             -----hhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh-HHHHHHHHcCcH
Q 014945          212 -----AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVC  285 (415)
Q Consensus       212 -----~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~i  285 (415)
                           .+..++..+..++..++...+   ......++|.+...+.+.+..++..++++++.++.+.. ......+. .++
T Consensus       338 ~d~~d~~~~~r~~a~~~L~~l~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il  413 (861)
T 2bpt_A          338 EDPEDDDWNVSMSAGACLQLFAQNCG---NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QAL  413 (861)
T ss_dssp             CC-CCCCCHHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHH
T ss_pred             cccccccCcHHHHHHHHHHHHHHHcc---HhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHH
Confidence                 234688899999999887533   22345677888888888899999999999999997753 43333333 478


Q ss_pred             HHHHHhcCCCChhhHHHHHHHHHHhhcCChHHH--HHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCC----HH
Q 014945          286 PRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT--QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN----VN  359 (415)
Q Consensus       286 ~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~--~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~----~~  359 (415)
                      +.++..+.++++.++..+++++|+++.......  ... -..+++.++..+.+.  +.++..|+|++.+++.+.    ++
T Consensus       414 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~~~~~~~~  490 (861)
T 2bpt_A          414 PSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH-LPGVVQACLIGLQDH--PKVATNCSWTIINLVEQLAEATPS  490 (861)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT-HHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHSSSSSC
T ss_pred             HHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH-HHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHhcccccch
Confidence            899999999999999999999999986421100  000 114577788888654  789999999999998631    12


Q ss_pred             HHHHHHHcCCHHHHHHHhccCC--HHHHHHHHHHHHHHhCCCCH
Q 014945          360 QIQAIIEAGIIGPLVNLLLNAE--FEIKKEAAWAISNATSGGSN  401 (415)
Q Consensus       360 ~~~~l~~~~~i~~L~~~l~~~~--~~v~~~a~~aL~nl~~~~~~  401 (415)
                      .....+. .+++.|+..+.+.+  +.++..++.+++.++...+.
T Consensus       491 ~l~~~~~-~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~  533 (861)
T 2bpt_A          491 PIYNFYP-ALVDGLIGAANRIDNEFNARASAFSALTTMVEYATD  533 (861)
T ss_dssp             GGGGGHH-HHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCG
T ss_pred             hhHHHHH-HHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcch
Confidence            1222222 36788888887533  78999999999999876554

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.56  E-value=8.7e-14  Score=132.67  Aligned_cols=278  Identities=17%  Similarity=0.215  Sum_probs=195.2

Q ss_pred             ccHHHHHHhhcCC--CHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCC-ChHHHHHHHHHHHHHhCCCc
Q 014945           71 ESLPAMVAGVWSD--DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTS  147 (415)
Q Consensus        71 ~~i~~l~~~l~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~~i~~~a~~~L~~l~~~~~  147 (415)
                      +.++.+++.+.++  ++..+..|+.+|..+............. ..+++.++.++.++. ++.+|..|+++++++...-.
T Consensus       128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~  206 (462)
T 1ibr_B          128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK  206 (462)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            3578888899888  8999999999999987532111111121 247889999999872 38999999999999765322


Q ss_pred             hhhH-HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHH
Q 014945          148 ENTR-VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN  226 (415)
Q Consensus       148 ~~~~-~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~  226 (415)
                      +... .....-+++.+...+.++++.++..++++|..++...+..-...+..++++.++..+ .+.+..++..+++++..
T Consensus       207 ~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~v~~~a~~~l~~  285 (462)
T 1ibr_B          207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM-KSDIDEVALQGIEFWSN  285 (462)
T ss_dssp             HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHH-HCSSHHHHHHHHHHHHH
T ss_pred             HhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCchHHHHHHHHHHHH
Confidence            1110 001111466777778888999999999999999865443111111114566666666 66788899999999999


Q ss_pred             hhhCC-------------------CCCch--hhhhchHHHHHHhhcCC-------ChhHHHHHHHHHHHhccCChHHHHH
Q 014945          227 FCRGK-------------------PQPLF--EQTRPALPALERLIHSN-------DDEVLTDACWALSYLSDGTNDKIQA  278 (415)
Q Consensus       227 l~~~~-------------------~~~~~--~~~~~~l~~l~~lL~~~-------d~~v~~~a~~~l~~l~~~~~~~~~~  278 (415)
                      ++...                   .....  .....++|.++..+...       +..++..++.++..++...++.   
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~---  362 (462)
T 1ibr_B          286 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---  362 (462)
T ss_dssp             HHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT---
T ss_pred             HHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHH---
Confidence            88642                   01111  12355677777777432       3578999999999988654321   


Q ss_pred             HHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh-HHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcC
Q 014945          279 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD-MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG  356 (415)
Q Consensus       279 ~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~  356 (415)
                      ++ ..+++.+...+.++++.++..|+.++|.++.+.. ......+ ..++|.++..+.++ ++.||..|+|+|++++..
T Consensus       363 ~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~~~~~  438 (462)
T 1ibr_B          363 IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDP-SVVVRDTAAWTVGRICEL  438 (462)
T ss_dssp             HH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHh
Confidence            22 2467888889999999999999999999998754 2111111 46899999999998 999999999999999973

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.55  E-value=3e-13  Score=113.78  Aligned_cols=185  Identities=22%  Similarity=0.228  Sum_probs=158.5

Q ss_pred             cCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhH
Q 014945          113 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR  192 (415)
Q Consensus       113 ~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~  192 (415)
                      .+..+.++++|++++ +.++..|+++|+.+..           .+.++.|+.+|.++++.++..++++|+.+..  +   
T Consensus        13 ~~~~~~~i~~L~~~~-~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--~---   75 (201)
T 3ltj_A           13 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--E---   75 (201)
T ss_dssp             HHHHHHHHHHTTCSC-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G---
T ss_pred             CcchHHHHHHhcCCC-HHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--H---
Confidence            356799999999999 9999999999998764           1468999999999999999999999999842  1   


Q ss_pred             HHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 014945          193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT  272 (415)
Q Consensus       193 ~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~  272 (415)
                            +.++.|+..+ .++++.++..++++|..+..          ...++.|..++.++++.++..++++++.+..  
T Consensus        76 ------~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--  136 (201)
T 3ltj_A           76 ------RAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--  136 (201)
T ss_dssp             ------GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--
T ss_pred             ------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--
Confidence                  3678888888 77899999999999998753          3578899999999999999999999999853  


Q ss_pred             hHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHH
Q 014945          273 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN  352 (415)
Q Consensus       273 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~n  352 (415)
                               .+.++.|..++.++++.++..|+++|+.+..  +         ..++.|..++.++ ++.+|..|.++|.+
T Consensus       137 ---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--~---------~~~~~L~~~l~d~-~~~vr~~A~~aL~~  195 (201)
T 3ltj_A          137 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETG-TGFARKVAVNYLET  195 (201)
T ss_dssp             ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHC-CHHHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence                     3467889999999999999999999999932  2         2567888899888 99999999999998


Q ss_pred             Hh
Q 014945          353 IT  354 (415)
Q Consensus       353 l~  354 (415)
                      +.
T Consensus       196 l~  197 (201)
T 3ltj_A          196 HK  197 (201)
T ss_dssp             CC
T ss_pred             HH
Confidence            75

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.52  E-value=3e-13  Score=139.42  Aligned_cols=317  Identities=18%  Similarity=0.222  Sum_probs=220.9

Q ss_pred             HHHHHHhhcCC--CHHHHHHHHHHHHHHhccCCCCch-hHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchh
Q 014945           73 LPAMVAGVWSD--DRNIQLDATTQFRKLLSIERSPPI-NEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  149 (415)
Q Consensus        73 i~~l~~~l~~~--~~~~~~~a~~~l~~l~~~~~~~~~-~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  149 (415)
                      ++.+.+.+.++  ++.++..|+.++..++..- .... .......+++.+...+.+.+ ++++..++++|..++...+..
T Consensus       174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~-~~~~~~~~~~~~il~~l~~~~~~~~-~~vr~~a~~~l~~l~~~~~~~  251 (876)
T 1qgr_A          174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFT-KANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQY  251 (876)
T ss_dssp             HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC-HHHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSGGG
T ss_pred             HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhHHH
Confidence            34566667665  6889999999999886431 1111 11111236777888887777 899999999999999865655


Q ss_pred             hHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCch---------------------hHHHHHhcCChHHHHHHh
Q 014945          150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK---------------------CRDLVLSNGALMPLLAQF  208 (415)
Q Consensus       150 ~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~---------------------~~~~~~~~g~i~~L~~~l  208 (415)
                      ....+...+++.++..+.+.++.++..+++++..++.....                     ...... ...++.++..+
T Consensus       252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l  330 (876)
T 1qgr_A          252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTL  330 (876)
T ss_dssp             CHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH-HHHhHHHHHHh
Confidence            44445457888888888888999999999999988743110                     000001 12456666666


Q ss_pred             cc------chhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh-HHHHHHHH
Q 014945          209 NE------HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIE  281 (415)
Q Consensus       209 ~~------~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~-~~~~~~~~  281 (415)
                      ..      +.+..++..+..++..++...+   ......++|.+...+.++++.++..++++++.++.+.. +.....+ 
T Consensus       331 ~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~---~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-  406 (876)
T 1qgr_A          331 TKQDENDDDDDWNPCKAAGVCLMLLATCCE---DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-  406 (876)
T ss_dssp             TCCCSSCCTTCCCHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-
T ss_pred             hcccccccccccHHHHHHHHHHHHHHHHCc---HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-
Confidence            32      2345788899999998887543   13356778888888888999999999999999997754 3333333 


Q ss_pred             cCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHH--HHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCH-
Q 014945          282 AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT--QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV-  358 (415)
Q Consensus       282 ~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~--~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~-  358 (415)
                      ..+++.++..|.++++.++..|++++++++...+...  ...+ ..+++.++..+.+  ++.++..++|++++++.... 
T Consensus       407 ~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l-~~~l~~l~~~l~~--~~~v~~~a~~al~~l~~~~~~  483 (876)
T 1qgr_A          407 IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL-APLLQCLIEGLSA--EPRVASNVCWAFSSLAEAAYE  483 (876)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH-HHHHHHHHHHTTS--CHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH-HHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhh
Confidence            3578999999999999999999999999997643211  0011 1456778888865  37899999999999986321 


Q ss_pred             -------------HHHHHHHHcCCHHHHHHHhccC---CHHHHHHHHHHHHHHhCCCC
Q 014945          359 -------------NQIQAIIEAGIIGPLVNLLLNA---EFEIKKEAAWAISNATSGGS  400 (415)
Q Consensus       359 -------------~~~~~l~~~~~i~~L~~~l~~~---~~~v~~~a~~aL~nl~~~~~  400 (415)
                                   +.....++ .+++.|+..+...   +..++..+..+++.++...+
T Consensus       484 ~~~~~~~~~~~~~~~l~~~~~-~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~  540 (876)
T 1qgr_A          484 AADVADDQEEPATYCLSSSFE-LIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSA  540 (876)
T ss_dssp             TTSCTTSCCCCCCCSSTTTHH-HHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCC
T ss_pred             ccccccccccccchhhhHhHH-HHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCc
Confidence                         00112222 3678888888764   35788889999998876543

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.52  E-value=5.2e-12  Score=124.47  Aligned_cols=301  Identities=15%  Similarity=0.171  Sum_probs=212.4

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHH
Q 014945           74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV  153 (415)
Q Consensus        74 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~  153 (415)
                      ..+.+.+++++...+..++.-+..+.... .+.      ..+....++++.+++ ...+.-+...+..++..+++.... 
T Consensus        37 ~~ir~~l~~~~~~~k~~~l~kli~~~~~G-~d~------~~~~~~vik~~~s~~-~~~Krl~Yl~~~~~~~~~~e~~~l-  107 (618)
T 1w63_A           37 AAIRSSFREEDNTYRCRNVAKLLYMHMLG-YPA------HFGQLECLKLIASQK-FTDKRIGYLGAMLLLDERQDVHLL-  107 (618)
T ss_dssp             HHHHHHHTTTCTTTHHHHHHHHHHHHHTT-CCC------GGGHHHHHHHHHSSS-HHHHHHHHHHHHHHCCCCHHHHHH-
T ss_pred             HHHHHHhhCCCHHHHHHHHHHHHHHHHcC-CCC------cchHHHHHHHHcCCc-hHHHHHHHHHHHHHhCCCcHHHHH-
Confidence            44455555555555555555444433322 221      224667778888888 888988888999998865543222 


Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCC
Q 014945          154 IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ  233 (415)
Q Consensus       154 ~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~  233 (415)
                          +++.|.+-|.++++.++..|+++|+++..  +.   . . ...++.+...+ .+.++.+++.|+.++.++....|.
T Consensus       108 ----~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~~---~-~-~~l~~~l~~~L-~~~~~~VRk~A~~al~~l~~~~p~  175 (618)
T 1w63_A          108 ----MTNCIKNDLNHSTQFVQGLALCTLGCMGS--SE---M-C-RDLAGEVEKLL-KTSNSYLRKKAALCAVHVIRKVPE  175 (618)
T ss_dssp             ----HHHHHHHHHSCSSSHHHHHHHHHHHHHCC--HH---H-H-HHHHHHHHHHH-HSCCHHHHHHHHHHHHHHHHHCGG
T ss_pred             ----HHHHHHHhcCCCCHhHHHHHHHHHHhcCC--HH---H-H-HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHChH
Confidence                37788888999999999999999999973  22   1 1 23567788888 778999999999999999986542


Q ss_pred             CchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCC---------------CChh
Q 014945          234 PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH---------------PSPS  298 (415)
Q Consensus       234 ~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~---------------~~~~  298 (415)
                          ....+++.+..+|.+.|+.|+..|++++..++..+++....+  ..+++.++.+|.+               .++.
T Consensus       176 ----~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~  249 (618)
T 1w63_A          176 ----LMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPF  249 (618)
T ss_dssp             ----GGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHH
T ss_pred             ----HHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCCh
Confidence                335788889999999999999999999999997765432222  2566777766542               3666


Q ss_pred             hHHHHHHHHHHhhcCChHHHHH-------H----------------------HH--------CCChHHHHHHhcCCCccc
Q 014945          299 VLIPALRTVGNIVTGDDMQTQC-------I----------------------IN--------HQALPCLLDLLTQNYKKS  341 (415)
Q Consensus       299 v~~~a~~~l~nl~~~~~~~~~~-------~----------------------~~--------~~~l~~L~~ll~~~~~~~  341 (415)
                      .+..++++|+.++..++.....       +                      +.        ..+++.|..++.++ ++.
T Consensus       250 ~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~-d~~  328 (618)
T 1w63_A          250 LQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNN-DKN  328 (618)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCS-STT
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCC-CCc
Confidence            7777888888877654421110       0                      00        02456777888887 889


Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCH-HHHHHH
Q 014945          342 IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSN-EQIKYK  407 (415)
Q Consensus       342 v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~-~~~~~l  407 (415)
                      +|..|..+|+.++...+..    +. ...+.++.++.+++..+|..|+.+|..++...+- ..+..|
T Consensus       329 vr~~aL~~L~~i~~~~p~~----~~-~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~iv~eL  390 (618)
T 1w63_A          329 IRYVALTSLLKTVQTDHNA----VQ-RHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMKEL  390 (618)
T ss_dssp             THHHHHHHHHHHHHHHHHH----HG-GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhCHHH----HH-HHHHHHHHHccCCChhHHHHHHHHHHHHcccccHHHHHHHH
Confidence            9999999999988754432    22 2567888899999999999999999999987652 333444

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.47  E-value=9.1e-13  Score=140.64  Aligned_cols=315  Identities=15%  Similarity=0.159  Sum_probs=221.8

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (415)
Q Consensus        72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  151 (415)
                      .++.+++.+.+.|++.+..|...|.+.+... ......-....+++.+++.+.+++ +.+|..|+.+|+.++...++.  
T Consensus         7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~-~~~~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~~--   82 (1230)
T 1u6g_C            7 HISNLLEKMTSSDKDFRFMATNDLMTELQKD-SIKLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEY--   82 (1230)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSS-CCSCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHH--
T ss_pred             HHHHHHHhcCCCCHhHHHHHHHHHHHHHccc-ccCCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCHH--
Confidence            5789999999999999999999998876432 111111122346788999999877 999999999999999765441  


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchh------HHHHHhcCChHHHHHHhccchhHhHHHHHHHHHH
Q 014945          152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC------RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS  225 (415)
Q Consensus       152 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~------~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~  225 (415)
                      .+  ..+++.++..+.++++.+|..|+.+|+.++...+..      ... .....++.|+..+.++.+..++..++.++.
T Consensus        83 ~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~-~~~~llp~L~~~l~~~~~~~~~~~al~~l~  159 (1230)
T 1u6g_C           83 QV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAAN-VCKKITGRLTSAIAKQEDVSVQLEALDIMA  159 (1230)
T ss_dssp             HH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHH-HHHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred             HH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHH-HHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence            11  136788888888888899999999999998543221      111 122367888888843577889999999999


Q ss_pred             HhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCC-ChhhHHHHH
Q 014945          226 NFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP-SPSVLIPAL  304 (415)
Q Consensus       226 ~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~  304 (415)
                      .++...+.........+++.+...+.++++.++..++.+++.++...++.   ++ ..+++.++..|.+. ++.++..++
T Consensus       160 ~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~~-~~~l~~l~~~L~~~~~~~~r~~a~  235 (1230)
T 1u6g_C          160 DMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---VF-VDLIEHLLSELSKNDSMSTTRTYI  235 (1230)
T ss_dssp             HHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHH
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---HH-HHHHHHHHHHhccCCchhHHHHHH
Confidence            99975433222345778889999999999999999999999998765432   22 34677888877544 346788889


Q ss_pred             HHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc-----
Q 014945          305 RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-----  379 (415)
Q Consensus       305 ~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~-----  379 (415)
                      .+++.++...+...... -..+++.++..+.+. ++.+|..+++++..++...++.+...+. .+++.++..+..     
T Consensus       236 ~~l~~l~~~~~~~~~~~-l~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~~~~l~-~li~~ll~~l~~d~~~~  312 (1230)
T 1u6g_C          236 QCIAAISRQAGHRIGEY-LEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHVS-TIINICLKYLTYDPNYN  312 (1230)
T ss_dssp             HHHHHHHHHSSGGGTTS-CTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCCCC----
T ss_pred             HHHHHHHHHhHHHHHHH-HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHChHHHHHhHH-HHHHHHHHHhCCCCCCC
Confidence            99999887544321111 136789999999888 8999999999999998743322222222 134444443321     


Q ss_pred             --------------------------------CCHHHHHHHHHHHHHHhCCCC
Q 014945          380 --------------------------------AEFEIKKEAAWAISNATSGGS  400 (415)
Q Consensus       380 --------------------------------~~~~v~~~a~~aL~nl~~~~~  400 (415)
                                                      ...++|..|+.++..++...+
T Consensus       313 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~  365 (1230)
T 1u6g_C          313 YDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRH  365 (1230)
T ss_dssp             --------------------------------CTTHHHHHHHHHHHHHHTTCC
T ss_pred             CcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhch
Confidence                                            124679999999999987543

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.43  E-value=2.5e-10  Score=112.19  Aligned_cols=294  Identities=13%  Similarity=0.159  Sum_probs=200.4

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh
Q 014945           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  150 (415)
Q Consensus        71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  150 (415)
                      .....+++.+.+++...+..+..++..++..+    .+.++-  +++.+.+=+++++ +.++-.|+.+|+++..  ++..
T Consensus        74 ~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~----~e~~~L--~iN~l~kDl~~~n-~~ir~lALr~L~~i~~--~e~~  144 (621)
T 2vgl_A           74 FGHMEAVNLLSSNRYTEKQIGYLFISVLVNSN----SELIRL--INNAIKNDLASRN-PTFMGLALHCIANVGS--REMA  144 (621)
T ss_dssp             SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCC----HHHHHH--HHHHHHHHHHSCC-HHHHHHHHHHHHHHCC--HHHH
T ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHHHHHccCC----cHHHHH--HHHHHHHhcCCCC-HHHHHHHHHHhhccCC--HHHH
Confidence            35788999999999999998888888876432    122211  3678888888888 9999999999999975  4433


Q ss_pred             HHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhh
Q 014945          151 RVVIDHGAVPIFVRLL--SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  228 (415)
Q Consensus       151 ~~~~~~g~i~~L~~ll--~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~  228 (415)
                      +     .+++.+.+++  .+.++.|+..|+.++.++....|+.   +...+.++.+..+| .+.++.++..|+.++..++
T Consensus       145 ~-----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~  215 (621)
T 2vgl_A          145 E-----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLL-NDQHLGVVTAATSLITTLA  215 (621)
T ss_dssp             H-----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHT-TCSCHHHHHHHHHHHHHHH
T ss_pred             H-----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHh-CCCCccHHHHHHHHHHHHH
Confidence            3     3578889999  8899999999999999998765542   22246889999999 7788899999999999998


Q ss_pred             hCCCCCchhhhhchHHHHH----HhhcCC-------------ChhHHHHHHHHHHHhccCC-hHHHHHHH----------
Q 014945          229 RGKPQPLFEQTRPALPALE----RLIHSN-------------DDEVLTDACWALSYLSDGT-NDKIQAVI----------  280 (415)
Q Consensus       229 ~~~~~~~~~~~~~~l~~l~----~lL~~~-------------d~~v~~~a~~~l~~l~~~~-~~~~~~~~----------  280 (415)
                      ...+.    .....+|.++    .++...             ++..+...+..+..++..+ ++....+.          
T Consensus       216 ~~~~~----~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~  291 (621)
T 2vgl_A          216 QKNPE----EFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKA  291 (621)
T ss_dssp             HHCHH----HHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HhChH----HHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Confidence            76432    1122233222    222111             3455555555555555321 11111000          


Q ss_pred             -----------------------------------HcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCC
Q 014945          281 -----------------------------------EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQ  325 (415)
Q Consensus       281 -----------------------------------~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~  325 (415)
                                                         -..++..|..+|.+.++.++..++.+|..++...+. .. .+. .
T Consensus       292 ~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~-~~~-~  368 (621)
T 2vgl_A          292 QEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS-HE-AVK-T  368 (621)
T ss_dssp             HSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HH-HHH-T
T ss_pred             ccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-HH-HHH-H
Confidence                                               012345566667777777888888888888765531 11 122 3


Q ss_pred             ChHHHHHHhc-CCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhC
Q 014945          326 ALPCLLDLLT-QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  397 (415)
Q Consensus       326 ~l~~L~~ll~-~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~  397 (415)
                      ..+.++..+. ++ +..+|..+..++..++.  +.++..     ++..|...+...|.+++..++.+++.++.
T Consensus       369 ~~~~i~~~L~~d~-d~~Ir~~aL~lL~~l~~--~~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~  433 (621)
T 2vgl_A          369 HIETVINALKTER-DVSVRQRAVDLLYAMCD--RSNAQQ-----IVAEMLSYLETADYSIREEIVLKVAILAE  433 (621)
T ss_dssp             THHHHHHHHTTCC-CHHHHHHHHHHHHHHCC--HHHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCC-CHhHHHHHHHHHHHHcC--hhhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            5667777787 77 88888888888888873  455544     45567777777788888888888888874

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.37  E-value=9e-12  Score=132.97  Aligned_cols=318  Identities=12%  Similarity=0.166  Sum_probs=217.5

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCc----hhHHHhcCchHHHHHhhcC-CCChHHHHHHHHHHHHHhCCC
Q 014945           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPP----INEVIQSGVVPRFIEFLSR-DDFPQLQFEAAWALTNIASGT  146 (415)
Q Consensus        72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~----~~~~~~~g~i~~L~~ll~~-~~~~~i~~~a~~~L~~l~~~~  146 (415)
                      .++.++..+.++++.++..|+.++..+...-..+.    ...-....++|.|+..+.+ ++ +.++..|+.+|+.++...
T Consensus        87 i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~-~~~~~~al~~l~~~~~~~  165 (1230)
T 1u6g_C           87 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED-VSVQLEALDIMADMLSRQ  165 (1230)
T ss_dssp             HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSC-HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHh
Confidence            35677788888888888888888888875432110    0111223478999999984 66 899999999999988532


Q ss_pred             chhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHH
Q 014945          147 SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN  226 (415)
Q Consensus       147 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~  226 (415)
                      +....... ..+++.++..+.++++.++..|+.+|+.++...+.   .+ -...++.++..+....+...+..++.++..
T Consensus       166 ~~~l~~~~-~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~  240 (1230)
T 1u6g_C          166 GGLLVNFH-PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAA  240 (1230)
T ss_dssp             CSSCTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHH
T ss_pred             HhHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HH-HHHHHHHHHHHhccCCchhHHHHHHHHHHH
Confidence            21111111 24577788888888999999999999999976542   12 223578888888544445677788889998


Q ss_pred             hhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCC------------
Q 014945          227 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH------------  294 (415)
Q Consensus       227 l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~------------  294 (415)
                      ++...+..-......++|.+...+.+++++++..+++++..++..........+ ..+++.++..+..            
T Consensus       241 l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~~~d~~~  319 (1230)
T 1u6g_C          241 ISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYDDEDED  319 (1230)
T ss_dssp             HHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC-----------
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCCCcccccc
Confidence            887644322234578899999999988999999999999988765432211121 2244445444421            


Q ss_pred             -------------------------CChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHH
Q 014945          295 -------------------------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT  349 (415)
Q Consensus       295 -------------------------~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~  349 (415)
                                               ..+.++..|+.+++.++...+......+ ..+++.+...+.+. ++.+|..++.+
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~-~~~Vr~~a~~~  397 (1230)
T 1u6g_C          320 ENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKER-EENVKADVFHA  397 (1230)
T ss_dssp             -------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCS-SSHHHHHHHHH
T ss_pred             cccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCC-chHHHHHHHHH
Confidence                                     1246788999999999875543333333 36788888888888 89999999999


Q ss_pred             HHHHhc--CC-----------------HHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Q 014945          350 ISNITA--GN-----------------VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG  399 (415)
Q Consensus       350 l~nl~~--~~-----------------~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~  399 (415)
                      +..++.  +.                 ......++. .+++.+...+.++++.+|..++.+|+.++...
T Consensus       398 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~  465 (1230)
T 1u6g_C          398 YLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVP-NIVKALHKQMKEKSVKTRQCCFNMLTELVNVL  465 (1230)
T ss_dssp             HHHHHHHHCCC------------CCCHHHHHHHHTT-HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHhccccccccCccccccccchHHHHHHHhh-HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHc
Confidence            887774  11                 122223332 36777777799999999999999999998653

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=99.31  E-value=6.5e-10  Score=87.08  Aligned_cols=216  Identities=13%  Similarity=0.173  Sum_probs=179.2

Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCc
Q 014945          156 HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL  235 (415)
Q Consensus       156 ~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~  235 (415)
                      ..++..++.+|+++-..++.+|+..+.+++...|+..+..     +..|+.++.++...+.......++..++...|   
T Consensus        31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P---  102 (253)
T 2db0_A           31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP---  102 (253)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH---
T ss_pred             HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCH---
Confidence            3568899999998888999999999999999988765553     45778888778888888888999999987654   


Q ss_pred             hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh
Q 014945          236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD  315 (415)
Q Consensus       236 ~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~  315 (415)
                       ..+.+.+|.+..-..-.|+.++.+..++|..++..+++...     +++.-+..++.+++..-+..|+..++.+.....
T Consensus       103 -e~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen~~  176 (253)
T 2db0_A          103 -ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGENSF  176 (253)
T ss_dssp             -HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTH
T ss_pred             -HHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhccCc
Confidence             45678889998888889999999999999999988876543     466889999999998889999999999887766


Q ss_pred             HHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHH
Q 014945          316 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA  395 (415)
Q Consensus       316 ~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl  395 (415)
                      .+..     -++|.|..+|.+. +.-||..|.-+|.+++..++..+..+      ..-+.-+++.+..+++..-.+|+.+
T Consensus       177 ~yv~-----PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRkii------~~kl~e~~D~S~lv~~~V~egL~rl  244 (253)
T 2db0_A          177 KYVN-----PFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRKVV------IKRLEELNDTSSLVNKTVKEGISRL  244 (253)
T ss_dssp             HHHG-----GGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHHHH------HHHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred             cccC-----cchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHHHH------HHHHHHhcCcHHHHHHHHHHHHHHH
Confidence            5443     5789999999999 99999999999999999888844433      2335567888889999999999988


Q ss_pred             hC
Q 014945          396 TS  397 (415)
Q Consensus       396 ~~  397 (415)
                      +.
T Consensus       245 ~l  246 (253)
T 2db0_A          245 LL  246 (253)
T ss_dssp             HH
T ss_pred             HH
Confidence            74

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.26  E-value=2.4e-10  Score=113.79  Aligned_cols=213  Identities=16%  Similarity=0.121  Sum_probs=155.8

Q ss_pred             HHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhcCC-CchhHHH
Q 014945          117 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFV-RLLSSPTDDVREQAVWALGNVAGD-SPKCRDL  194 (415)
Q Consensus       117 ~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~-~ll~~~~~~v~~~a~~~L~nl~~~-~~~~~~~  194 (415)
                      ..+++.|++++ +..|..|+++|++|+. +++.+..+...|++..++ .+|.+++.+++..|+++|.||+.+ .+...+.
T Consensus        37 ~Pll~~L~S~~-~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~  114 (684)
T 4gmo_A           37 LPVLKDLKSPD-AKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVH  114 (684)
T ss_dssp             HHHHHHHSSSC-CSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             HHHHHHcCCCC-HHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHH
Confidence            34567789988 9999999999999998 488888888888887765 578889999999999999999964 4667788


Q ss_pred             HHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChH
Q 014945          195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND  274 (415)
Q Consensus       195 ~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~  274 (415)
                      ++..|++++|..++.+ ..        ..+........... ......+           .++...++++|.+|+..+++
T Consensus       115 l~~~~il~~L~~~l~~-~~--------~~~~~~~~~~~~~~-~~~~~~~-----------~~~~~~~l~lL~~L~e~s~~  173 (684)
T 4gmo_A          115 LYRLDVLTAIEHAAKA-VL--------ETLTTSEPPFSKLL-KAQQRLV-----------WDITGSLLVLIGLLALARDE  173 (684)
T ss_dssp             HHHTTHHHHHHHHHHH-HH--------HHHHCBTTBGGGSC-HHHHHHH-----------HHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHcChHHHHHHHHHh-hH--------HHHhhhcccccccc-HHHHHHH-----------HHHHHHHHHHHHHHHhCCHH
Confidence            9999999999999832 11        12222211110000 0001111           12445677788888888887


Q ss_pred             HHHHHHHcCcHHHHHHhcCC---CChhhHHHHHHHHHHhhcCChHHHHHHHHCCChH---HHHHHhcCCCccchHHHHHH
Q 014945          275 KIQAVIEAGVCPRLVELLRH---PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALP---CLLDLLTQNYKKSIKKEACW  348 (415)
Q Consensus       275 ~~~~~~~~~~i~~L~~lL~~---~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~---~L~~ll~~~~~~~v~~~a~~  348 (415)
                      ....+...+.++.|+..|.+   ....++..|+.+|..++..++...+.+.+.+...   .+..+.. . +...+..+|+
T Consensus       174 ~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~-~-~~~~~~la~g  251 (684)
T 4gmo_A          174 IHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLAT-G-TDPRAVMACG  251 (684)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHH-S-SCTTHHHHHH
T ss_pred             HHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhc-C-CcHHHHHHHH
Confidence            77778888999999999843   2457999999999999999998888888876543   3333333 3 4556888999


Q ss_pred             HHHHHh
Q 014945          349 TISNIT  354 (415)
Q Consensus       349 ~l~nl~  354 (415)
                      ++.|+.
T Consensus       252 iL~Ni~  257 (684)
T 4gmo_A          252 VLHNVF  257 (684)
T ss_dssp             HHHHHH
T ss_pred             HHHhHh
Confidence            999985

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=99.24  E-value=8.4e-10  Score=110.02  Aligned_cols=273  Identities=14%  Similarity=0.139  Sum_probs=192.8

Q ss_pred             cHHHHHHhhc---CCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCC-------ChHHHHHHHHHHHH
Q 014945           72 SLPAMVAGVW---SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-------FPQLQFEAAWALTN  141 (415)
Q Consensus        72 ~i~~l~~~l~---~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~-------~~~i~~~a~~~L~~  141 (415)
                      ++..+-..|.   ++++.++.-|+..|..+-.+..    ..     ++..|...|.+++       .+.++..|+..|+.
T Consensus       393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~----~~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl  463 (963)
T 4ady_A          393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG----RD-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL  463 (963)
T ss_dssp             HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT----HH-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc----HH-----HHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence            3444555555   5667777788888877754431    11     3566777776543       26789999999999


Q ss_pred             HhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHH
Q 014945          142 IASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNAT  221 (415)
Q Consensus       142 l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~  221 (415)
                      +..++...       .+++.|..++.+++..+++.|..+||.+..+.... +      ++..|+..+..+.+..+++.++
T Consensus       464 a~~GS~~e-------ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~-~------ai~~LL~~~~e~~~e~vrR~aa  529 (963)
T 4ady_A          464 AAMGSANI-------EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP-E------AIHDMFTYSQETQHGNITRGLA  529 (963)
T ss_dssp             HSTTCCCH-------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH-H------HHHHHHHHHHHCSCHHHHHHHH
T ss_pred             HhcCCCCH-------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH-H------HHHHHHHHHhccCcHHHHHHHH
Confidence            87664321       24667888887777778889999999875443311 1      3456777665566778999999


Q ss_pred             HHHHHhhhCCCCCchhhhhchHHHHHHhhc-CCChhHHHHHHHHHHHhc--cCChHHHHHHHHcCcHHHHHHhc-CCCCh
Q 014945          222 WTLSNFCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTDACWALSYLS--DGTNDKIQAVIEAGVCPRLVELL-RHPSP  297 (415)
Q Consensus       222 ~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~-~~d~~v~~~a~~~l~~l~--~~~~~~~~~~~~~~~i~~L~~lL-~~~~~  297 (415)
                      .+|..+..+.        ...++.++..|. +.++.++..++.+++.-.  .++...         ++.|+..+ .+.+.
T Consensus       530 lgLGll~~g~--------~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~a---------Iq~LL~~~~~d~~d  592 (963)
T 4ady_A          530 VGLALINYGR--------QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSA---------VKRLLHVAVSDSND  592 (963)
T ss_dssp             HHHHHHTTTC--------GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHH---------HHHHHHHHHHCSCH
T ss_pred             HHHHhhhCCC--------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHH---------HHHHHHHhccCCcH
Confidence            9999887653        245566666665 568889988888776443  444333         34444444 45678


Q ss_pred             hhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHh
Q 014945          298 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL  377 (415)
Q Consensus       298 ~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l  377 (415)
                      .++..|+.+||.+..+.+         ..++.++.++.+..++.+|..|+++++.++.+++..       .++..|..+.
T Consensus       593 ~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~-------~aid~L~~L~  656 (963)
T 4ady_A          593 DVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ-------SAIDVLDPLT  656 (963)
T ss_dssp             HHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH-------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH-------HHHHHHHHHc
Confidence            899999999999988775         245667765554449999999999999999875531       1566788888


Q ss_pred             ccCCHHHHHHHHHHHHHHhCCCC
Q 014945          378 LNAEFEIKKEAAWAISNATSGGS  400 (415)
Q Consensus       378 ~~~~~~v~~~a~~aL~nl~~~~~  400 (415)
                      ++.+..|+..|+.+|+.+..+.+
T Consensus       657 ~D~d~~Vrq~Ai~ALG~Ig~gtn  679 (963)
T 4ady_A          657 KDPVDFVRQAAMIALSMILIQQT  679 (963)
T ss_dssp             TCSSHHHHHHHHHHHHHHSTTCC
T ss_pred             cCCCHHHHHHHHHHHHHHhcCCc
Confidence            99999999999999999987644

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.14  E-value=2.4e-09  Score=105.28  Aligned_cols=258  Identities=14%  Similarity=0.128  Sum_probs=174.0

Q ss_pred             HHHHHhh--cCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945           74 PAMVAGV--WSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (415)
Q Consensus        74 ~~l~~~l--~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  151 (415)
                      +.+.+.+  .+.++-++..|+.++.++.... ++   .+...++++.+.++|.+.+ +.++..|+.++..++..+++...
T Consensus       149 ~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~-p~---~~~~~~~~~~l~~lL~d~d-~~V~~~a~~~l~~i~~~~~~~~~  223 (621)
T 2vgl_A          149 GEIPKILVAGDTMDSVKQSAALCLLRLYRTS-PD---LVPMGDWTSRVVHLLNDQH-LGVVTAATSLITTLAQKNPEEFK  223 (621)
T ss_dssp             THHHHHHHCSSSCHHHHHHHHHHHHHHHHHC-GG---GCCCCSCHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCHHHHT
T ss_pred             HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC-hh---hcCchhHHHHHHHHhCCCC-ccHHHHHHHHHHHHHHhChHHHH
Confidence            4455566  5566677777777776665432 11   1112478999999998888 99999999999999986554211


Q ss_pred             HHHhCCChHHHHHhhCC-------------CCHHHHHHHHHHHHHhcCC-CchhHHHHHhcCChHHHHHHhc--------
Q 014945          152 VVIDHGAVPIFVRLLSS-------------PTDDVREQAVWALGNVAGD-SPKCRDLVLSNGALMPLLAQFN--------  209 (415)
Q Consensus       152 ~~~~~g~i~~L~~ll~~-------------~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~~l~--------  209 (415)
                      .++. ..+..|.+++..             +++-.+...+..|+.++.. ++..++.+.+  .+..++..+.        
T Consensus       224 ~~~~-~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l  300 (621)
T 2vgl_A          224 TSVS-LAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKV  300 (621)
T ss_dssp             THHH-HHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSH
T ss_pred             HHHH-HHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccc
Confidence            1111 123333334322             1677899999999999863 4454444443  3444443321        


Q ss_pred             cchh--HhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHH
Q 014945          210 EHAK--LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR  287 (415)
Q Consensus       210 ~~~~--~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~  287 (415)
                      ++.+  ..+...++.++..+..     .......++..|..+|.++++.++.-++.++..++...+.. . ++ ......
T Consensus       301 ~~~n~~~aVl~ea~~~i~~l~~-----~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~-~-~~-~~~~~~  372 (621)
T 2vgl_A          301 QHSNAKNAVLFEAISLIIHHDS-----EPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSH-E-AV-KTHIET  372 (621)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH-H-HH-HTTHHH
T ss_pred             cccchHHHHHHHHHHHHHhcCC-----cHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH-H-HH-HHHHHH
Confidence            1223  3788888888888751     23344567888999999899999999999999998765421 1 22 245678


Q ss_pred             HHHhcC-CCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc
Q 014945          288 LVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA  355 (415)
Q Consensus       288 L~~lL~-~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~  355 (415)
                      ++..|. +++..++..++.++..++.  +.....     ++..|...+.+. +...+..++..++.++.
T Consensus       373 i~~~L~~d~d~~Ir~~aL~lL~~l~~--~~Nv~~-----Iv~eL~~yl~~~-d~~~~~~~v~~I~~la~  433 (621)
T 2vgl_A          373 VINALKTERDVSVRQRAVDLLYAMCD--RSNAQQ-----IVAEMLSYLETA-DYSIREEIVLKVAILAE  433 (621)
T ss_dssp             HHHHHTTCCCHHHHHHHHHHHHHHCC--HHHHHH-----HHHHHHHHHHHC-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHhccCCCHhHHHHHHHHHHHHcC--hhhHHH-----HHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence            888888 8899999999999999985  334443     455677777777 88888888888887764

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=99.13  E-value=7.7e-09  Score=93.01  Aligned_cols=276  Identities=14%  Similarity=0.072  Sum_probs=166.7

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (415)
Q Consensus        72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  151 (415)
                      .+..+++.+.++|...+....-.+..+.... .+    ++  =+++.|.+=+++++ +-++-.|+++|++|..  ++..+
T Consensus        69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~-~e----~i--Lv~Nsl~kDl~~~N-~~iR~lALRtL~~I~~--~~m~~  138 (355)
T 3tjz_B           69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA-ED----VI--IVTSSLTKDMTGKE-DSYRGPAVRALCQITD--STMLQ  138 (355)
T ss_dssp             HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS-SC----GG--GGHHHHHHHHHSSC-HHHHHHHHHHHHHHCC--TTTHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH-HH----HH--HHHHHHHhhcCCCc-HhHHHHHHHHHhcCCC--HHHHH
Confidence            3567788999999999999888888875431 22    22  15788999999998 9999999999999987  44433


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC
Q 014945          152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK  231 (415)
Q Consensus       152 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~  231 (415)
                      .     +.+.+.+.|.+.++.|+..|+.+..++....|+.   +  .+++..+-.++ .+.++.++.+|+.++..++..+
T Consensus       139 ~-----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~---v--~~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~d  207 (355)
T 3tjz_B          139 A-----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDV---V--KRWVNEAQEAA-SSDNIMVQYHALGLLYHVRKND  207 (355)
T ss_dssp             H-----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHH---H--HTTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTTC
T ss_pred             H-----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHH---H--HHHHHHHHHHh-cCCCccHHHHHHHHHHHHHhhc
Confidence            3     4567888899999999999999999999888753   2  25888888888 7788889999999999998753


Q ss_pred             CCCchhhhhchHHHHHHhhcCC---ChhHHHHHHHHHHHhccCC-hHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHH
Q 014945          232 PQPLFEQTRPALPALERLIHSN---DDEVLTDACWALSYLSDGT-NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV  307 (415)
Q Consensus       232 ~~~~~~~~~~~l~~l~~lL~~~---d~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l  307 (415)
                              ...+..++..+...   ++-.+...++.+..++..+ +.     ....+++.+..+|++.++.|.-.|++++
T Consensus       208 --------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~~~aVvyEa~k~I  274 (355)
T 3tjz_B          208 --------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNKHEMVVYEAASAI  274 (355)
T ss_dssp             --------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHH
T ss_pred             --------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence                    11333444444332   4666666677766666544 22     1245778899999999999999999999


Q ss_pred             HHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHH
Q 014945          308 GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKE  387 (415)
Q Consensus       308 ~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~  387 (415)
                      -.+......    .. ..++..+..++.++ ++.+|-.|...|..+....|..++.     .-..+.+++.++|..+..-
T Consensus       275 ~~l~~~~~~----~~-~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~P~~v~~-----~n~~ie~li~d~n~sI~t~  343 (355)
T 3tjz_B          275 VNLPGCSAK----EL-APAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKHPSAVTA-----CNLDLENLVTDANRSIATL  343 (355)
T ss_dssp             TC----------------CCCTHHHHHHSS-SSSSHHHHHHCC-------------------------------------
T ss_pred             HhccCCCHH----HH-HHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHCcHHHHH-----HHHHHHHHccCCcHhHHHH
Confidence            887552221    11 24567788888888 9999999999999999877765543     2345667788888777665


Q ss_pred             HHHHH
Q 014945          388 AAWAI  392 (415)
Q Consensus       388 a~~aL  392 (415)
                      |+..|
T Consensus       344 Aittl  348 (355)
T 3tjz_B          344 AITTL  348 (355)
T ss_dssp             -----
T ss_pred             HHHHh
Confidence            55544

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.09  E-value=5.9e-10  Score=110.97  Aligned_cols=195  Identities=14%  Similarity=0.102  Sum_probs=150.4

Q ss_pred             ChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHH-HHHhhcCCChhHHHHHHHHHHHhccC-ChHHHH
Q 014945          200 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPA-LERLIHSNDDEVLTDACWALSYLSDG-TNDKIQ  277 (415)
Q Consensus       200 ~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~-l~~lL~~~d~~v~~~a~~~l~~l~~~-~~~~~~  277 (415)
                      .+.++++.| ++.++..+..|+++|++|+.+..........++++. +..+|.+++.+|+..|+++|.||+.. ..+...
T Consensus        35 ~i~Pll~~L-~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~  113 (684)
T 4gmo_A           35 KILPVLKDL-KSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV  113 (684)
T ss_dssp             TTHHHHHHH-SSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             hHHHHHHHc-CCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence            566788888 788999999999999999975433334444566654 56788999999999999999999854 456667


Q ss_pred             HHHHcCcHHHHHHhcCCCC---------------------hhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcC
Q 014945          278 AVIEAGVCPRLVELLRHPS---------------------PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ  336 (415)
Q Consensus       278 ~~~~~~~i~~L~~lL~~~~---------------------~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~  336 (415)
                      .+++.|+++.|..+|....                     +.+...++.+|.+++.+++.....+...+.++.++..|.+
T Consensus       114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~  193 (684)
T 4gmo_A          114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS  193 (684)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence            7899999999999874210                     1245568889999999888888888888999999998854


Q ss_pred             C--CccchHHHHHHHHHHHhcCCHHHHHHHHHcCCH---HHHHHHhccCCHHHHHHHHHHHHHHh
Q 014945          337 N--YKKSIKKEACWTISNITAGNVNQIQAIIEAGII---GPLVNLLLNAEFEIKKEAAWAISNAT  396 (415)
Q Consensus       337 ~--~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i---~~L~~~l~~~~~~v~~~a~~aL~nl~  396 (415)
                      .  ....++..|+.+|.+++.++++.++.+.+.+..   ..+..+.+ .+...+..+++.|.|+.
T Consensus       194 ~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~-~~~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          194 ADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLAT-GTDPRAVMACGVLHNVF  257 (684)
T ss_dssp             HCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHH-SSCTTHHHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhc-CCcHHHHHHHHHHHhHh
Confidence            3  134799999999999999999999988887653   33333333 44445778889999875

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=99.00  E-value=4.4e-09  Score=90.93  Aligned_cols=192  Identities=14%  Similarity=0.225  Sum_probs=146.5

Q ss_pred             HHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhc-CCChhHHHHHHHHHHHhccCChHHHHHHH
Q 014945          202 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVI  280 (415)
Q Consensus       202 ~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~~  280 (415)
                      +.+...+ .+.+...+..++..|..++...+.........+++.+...+. +.+..++..++.+++.++..-.......+
T Consensus        18 ~~l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~   96 (242)
T 2qk2_A           18 KDFYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA   96 (242)
T ss_dssp             TTHHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred             HHHHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            3466677 678899999999999999886322111223577888999995 89999999999999999854332222222


Q ss_pred             HcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcC-CHH
Q 014945          281 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVN  359 (415)
Q Consensus       281 ~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~  359 (415)
                       ..+++.++..+.+.+..++..+..++.+++....  ..     .+++.+...+++. ++.+|..++..|+.+... .++
T Consensus        97 -~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~  167 (242)
T 2qk2_A           97 -SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNK-NPSVKSETALFIARALTRTQPT  167 (242)
T ss_dssp             -HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGG
T ss_pred             -HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCC
Confidence             3478999999999999999999999999987543  11     3578899999998 999999999999997653 333


Q ss_pred             H-HHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCHHHH
Q 014945          360 Q-IQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI  404 (415)
Q Consensus       360 ~-~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~  404 (415)
                      . ....+. .++|.|+.++.+.++++|..|..+++.++..-..+.+
T Consensus       168 ~~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~  212 (242)
T 2qk2_A          168 ALNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAV  212 (242)
T ss_dssp             GCCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             CccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHH
Confidence            1 122333 3899999999999999999999999999865555434

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.99  E-value=1.3e-07  Score=94.51  Aligned_cols=273  Identities=16%  Similarity=0.130  Sum_probs=189.8

Q ss_pred             HHHHHHhhcCCC--------HHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhC
Q 014945           73 LPAMVAGVWSDD--------RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS  144 (415)
Q Consensus        73 i~~l~~~l~~~~--------~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~  144 (415)
                      +..|...|.+++        +.++..|+..|.....+..++        .+++.|...+.+++ ..++..|+.+|+.+..
T Consensus       431 ~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e--------ev~e~L~~~L~dd~-~~~~~~AalALGli~v  501 (963)
T 4ady_A          431 TDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANI--------EVYEALKEVLYNDS-ATSGEAAALGMGLCML  501 (963)
T ss_dssp             HHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH--------HHHHHHHHHHHTCC-HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCH--------HHHHHHHHHHhcCC-HHHHHHHHHHHhhhhc
Confidence            455566665444        556667777777654433111        24677888888777 6777889999998755


Q ss_pred             CCchhhHHHHhCCChHHHHHhh-CCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHH
Q 014945          145 GTSENTRVVIDHGAVPIFVRLL-SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWT  223 (415)
Q Consensus       145 ~~~~~~~~~~~~g~i~~L~~ll-~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~  223 (415)
                      ++...       .++..|+..+ ...+..++..++.+|+.+....+.         .++.++..|..+.++.++..++.+
T Consensus       502 GTgn~-------~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e---------~~~~li~~L~~~~dp~vRygaa~a  565 (963)
T 4ady_A          502 GTGKP-------EAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE---------LADDLITKMLASDESLLRYGGAFT  565 (963)
T ss_dssp             TCCCH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG---------GGHHHHHHHHHCSCHHHHHHHHHH
T ss_pred             ccCCH-------HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH---------HHHHHHHHHHhCCCHHHHHHHHHH
Confidence            43322       1244555543 456788999999999999877664         567788888667788888888888


Q ss_pred             HHHhhhCCCCCchhhhhchHHHHHHhh-cCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhc-CCCChhhHH
Q 014945          224 LSNFCRGKPQPLFEQTRPALPALERLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSVLI  301 (415)
Q Consensus       224 l~~l~~~~~~~~~~~~~~~l~~l~~lL-~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~  301 (415)
                      ++--+.+...      ...+..|++.+ .+.+..++..|+.+|+.+..+.++         .++.++.+| .+.++.+|.
T Consensus       566 lglAyaGTGn------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~  630 (963)
T 4ady_A          566 IALAYAGTGN------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRC  630 (963)
T ss_dssp             HHHHTTTSCC------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHH
T ss_pred             HHHHhcCCCC------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHH
Confidence            7755544211      23344444433 456788999999999998766542         356677655 577899999


Q ss_pred             HHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHH----HHHHHHcCCHHHHHHHh
Q 014945          302 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ----IQAIIEAGIIGPLVNLL  377 (415)
Q Consensus       302 ~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~----~~~l~~~~~i~~L~~~l  377 (415)
                      .+..+||.++.+++..       .+++.|..+..++ +..||..|+.+|+.+..++.+.    +..     +...|.+..
T Consensus       631 gAalALGli~aGn~~~-------~aid~L~~L~~D~-d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~-----~l~~L~~~~  697 (963)
T 4ady_A          631 GTAFALGIACAGKGLQ-------SAIDVLDPLTKDP-VDFVRQAAMIALSMILIQQTEKLNPQVAD-----INKNFLSVI  697 (963)
T ss_dssp             HHHHHHHHHTSSSCCH-------HHHHHHHHHHTCS-SHHHHHHHHHHHHHHSTTCCTTTCTTHHH-----HHHHHHHHH
T ss_pred             HHHHHHHHhccCCCcH-------HHHHHHHHHccCC-CHHHHHHHHHHHHHHhcCCccccchHHHH-----HHHHHHHHH
Confidence            9999999999887632       2466788888888 9999999999999999864432    333     344566666


Q ss_pred             cc--CCHHHHHHHHHHHHHHhCC
Q 014945          378 LN--AEFEIKKEAAWAISNATSG  398 (415)
Q Consensus       378 ~~--~~~~v~~~a~~aL~nl~~~  398 (415)
                      .+  .|+..+--|..|.+-+-.+
T Consensus       698 ~dk~~d~~~~fga~iAqGll~aG  720 (963)
T 4ady_A          698 TNKHQEGLAKFGACVAQGIMNAG  720 (963)
T ss_dssp             HCSSSCHHHHHHHHHHHHHHTTG
T ss_pred             hcccccHHHHHHHHHHHHHHhcC
Confidence            54  5678888888888877544

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.94  E-value=5.9e-07  Score=70.59  Aligned_cols=216  Identities=17%  Similarity=0.196  Sum_probs=165.2

Q ss_pred             hcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhcCCCch
Q 014945          112 QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPK  190 (415)
Q Consensus       112 ~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~nl~~~~~~  190 (415)
                      +..++..++.+|+++- ..++..|+.++..++...++....+     +..|+.+++ ++...+......++|.++...|+
T Consensus        30 d~~~l~~lI~~LDDDl-wtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe  103 (253)
T 2db0_A           30 DESVLKKLIELLDDDL-WTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE  103 (253)
T ss_dssp             CHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred             hHHHHHHHHHHhccHH-HHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH
Confidence            5567899999999887 8999999999999999877766554     445666654 45666777888999999988776


Q ss_pred             hHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc
Q 014945          191 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD  270 (415)
Q Consensus       191 ~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~  270 (415)
                      ..+.     .++.+..-+ .-.++.++.+..++|..+.+..|    ....+++.-+..++.++|..=+..++..++-+..
T Consensus       104 ~v~~-----vVp~lfany-rigd~kikIn~~yaLeeIaranP----~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGe  173 (253)
T 2db0_A          104 LVKS-----MIPVLFANY-RIGDEKTKINVSYALEEIAKANP----MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGE  173 (253)
T ss_dssp             HHHH-----HHHHHHHHS-CCCSHHHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCT
T ss_pred             HHHh-----hHHHHHHHH-hcCCccceecHHHHHHHHHHhCh----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence            4222     345555555 44589999999999999998754    3345667778889998887777777777777766


Q ss_pred             CChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHH
Q 014945          271 GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI  350 (415)
Q Consensus       271 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l  350 (415)
                      +.....     ..++|+|..+|.+.+.-|+..|..+|++++.-++..+..      +..-+.-+++. +..+.+..--.|
T Consensus       174 n~~~yv-----~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRki------i~~kl~e~~D~-S~lv~~~V~egL  241 (253)
T 2db0_A          174 NSFKYV-----NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKV------VIKRLEELNDT-SSLVNKTVKEGI  241 (253)
T ss_dssp             TTHHHH-----GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHH------HHHHHHHCCCS-CHHHHHHHHHHH
T ss_pred             cCcccc-----CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHH------HHHHHHHhcCc-HHHHHHHHHHHH
Confidence            655432     357899999999999999999999999999999875543      23355666777 778888888888


Q ss_pred             HHHhc
Q 014945          351 SNITA  355 (415)
Q Consensus       351 ~nl~~  355 (415)
                      +.++.
T Consensus       242 ~rl~l  246 (253)
T 2db0_A          242 SRLLL  246 (253)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87764

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.90  E-value=4.6e-08  Score=80.18  Aligned_cols=188  Identities=18%  Similarity=0.188  Sum_probs=149.6

Q ss_pred             CchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHH
Q 014945          114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD  193 (415)
Q Consensus       114 g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~  193 (415)
                      +.+..|..+|.+.| +.++..|+.+|..+...-+.......-...++.++.++.+.|+.+.-.|+.||..|..+.|-..+
T Consensus        33 ~~l~~L~~LL~dkD-~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           33 RALFLILELAGEDD-ETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHHHHHTTSSC-HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             hHHHHHHHHHhccc-hHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence            35788999998888 99999999999999886444443333346799999999999999999999999999988765444


Q ss_pred             HHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 014945          194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN  273 (415)
Q Consensus       194 ~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~  273 (415)
                      .+..  ....|...+ ..++.-+..+++..+..+--      ......++..+..++.+.|..++..++.++.+++....
T Consensus       112 ~y~K--l~~aL~dli-k~~~~il~~eaae~Lgklkv------~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~  182 (265)
T 3b2a_A          112 TFLK--AAKTLVSLL-ESPDDMMRIETIDVLSKLQP------LEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA  182 (265)
T ss_dssp             HHHH--HHHHHHHHT-TSCCHHHHHHHHHHHHHCCB------SCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred             HHHH--HHHHHHHHh-cCCCchHHHHHHHHhCcCCc------ccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence            4443  677888888 58888899999999998821      12235667788888999999999999999999986543


Q ss_pred             HHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCC
Q 014945          274 DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD  314 (415)
Q Consensus       274 ~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~  314 (415)
                      +.   -+-.+++.-+-.+|++.++.++..|+.++-.+.+.+
T Consensus       183 D~---~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p  220 (265)
T 3b2a_A          183 DS---GHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFP  220 (265)
T ss_dssp             SC---CCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             CH---HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence            21   011357788899999999999999999999998763

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.89  E-value=2.8e-08  Score=85.79  Aligned_cols=185  Identities=12%  Similarity=0.106  Sum_probs=140.6

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhc-CCCChHHHHHHHHHHHHHhCCCchhhHH
Q 014945           74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS-RDDFPQLQFEAAWALTNIASGTSENTRV  152 (415)
Q Consensus        74 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~i~~~a~~~L~~l~~~~~~~~~~  152 (415)
                      +.+.+.+.+.++..+..|+..|..++... ....... -..+++.|...+. +.+ ..++..|+.+++.++..-......
T Consensus        18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~-~~~~~~~-~~~i~~~L~~~l~kd~~-~~V~~~a~~~l~~la~~l~~~~~~   94 (242)
T 2qk2_A           18 KDFYDKLEEKKWTLRKESLEVLEKLLTDH-PKLENGE-YGALVSALKKVITKDSN-VVLVAMAGKCLALLAKGLAKRFSN   94 (242)
T ss_dssp             TTHHHHHTCSSHHHHHHHHHHHHHHHHHC-SSBCCCC-CHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred             HHHHhhhccCCHHHHHHHHHHHHHHHccC-CCCCCCC-HHHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHHhhhHHH
Confidence            35788889999999999999999998762 1111111 1246788888995 877 999999999999999632221122


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC-
Q 014945          153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-  231 (415)
Q Consensus       153 ~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~-  231 (415)
                      .+ ..++|.++..+.+.+..+++.+..+|..++...+ . +     ..++.+...+ ++.++.++..++..+..+.... 
T Consensus        95 ~~-~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~-~-----~ll~~l~~~l-~~~~~~vr~~~l~~l~~~l~~~~  165 (242)
T 2qk2_A           95 YA-SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-L-E-----AQQESIVESL-SNKNPSVKSETALFIARALTRTQ  165 (242)
T ss_dssp             HH-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-H-H-----HHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCC
T ss_pred             HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-H-H-----HHHHHHHHHH-cCCChHHHHHHHHHHHHHHHHcC
Confidence            22 2478999999999999999999999999987543 1 1     1467788888 6678899999999999966553 


Q ss_pred             CC-CchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc
Q 014945          232 PQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD  270 (415)
Q Consensus       232 ~~-~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~  270 (415)
                      +. ........++|.+..++.+.+++++..|..+++.++.
T Consensus       166 ~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          166 PTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             CCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence            32 2344557899999999999999999999999998873

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.86  E-value=1.7e-07  Score=76.95  Aligned_cols=188  Identities=15%  Similarity=0.131  Sum_probs=150.8

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh
Q 014945           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  150 (415)
Q Consensus        71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  150 (415)
                      +.+..++++|+..|+.++..++.++..+++.. +.......-..+++.++.++.+.+ ..+...|++||..+..+.|-..
T Consensus        33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~-~~~l~~~~~e~~Ld~iI~llk~~d-Ekval~A~r~L~~LLe~vpL~~  110 (265)
T 3b2a_A           33 RALFLILELAGEDDETTRLRAFVALGEILKRA-DSDLRMMVLERHLDVFINALSQEN-EKVTIKALRALGYLVKDVPMGS  110 (265)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCCSTT-HHHHHHHHHHHHHHHTTCCBCH
T ss_pred             hHHHHHHHHHhccchHHHHHHHHHHHHHHHhc-cccccHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHcCCCCCH
Confidence            35778999999999999999999999998764 233344444457999999999988 9999999999999999877666


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhC
Q 014945          151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  230 (415)
Q Consensus       151 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~  230 (415)
                      ..+..  ++.++..++.++++-+++.++..++.+-.-++.  .     +++..+..++ .+.+..++..++.++.+++..
T Consensus       111 ~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~--~-----~V~~~l~sLl-~Skd~~vK~agl~~L~eia~~  180 (265)
T 3b2a_A          111 KTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS--K-----LVRTYINELV-VSPDLYTKVAGFCLFLNMLNS  180 (265)
T ss_dssp             HHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC--H-----HHHHHHHHHH-TCSSHHHHHHHHHHHHHHGGG
T ss_pred             HHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccch--H-----HHHHHHHHHH-hCCChhHHHHHHHHHHHhhcc
Confidence            66664  577899999999999999999999999322221  1     1456778888 899999999999999999986


Q ss_pred             CCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 014945          231 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT  272 (415)
Q Consensus       231 ~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~  272 (415)
                      .  .+......++.-+-.+|++.|+.++.-|+.++-.+...+
T Consensus       181 S--~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p  220 (265)
T 3b2a_A          181 S--ADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFP  220 (265)
T ss_dssp             C--SSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             c--CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence            4  222334566667778889999999999999999887653

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.83  E-value=4e-10  Score=87.41  Aligned_cols=121  Identities=18%  Similarity=0.167  Sum_probs=93.6

Q ss_pred             hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHH
Q 014945          240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ  319 (415)
Q Consensus       240 ~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~  319 (415)
                      .+.++.+..+|+++++.++..++++|+.+...            .++.|+..|.++++.++..|+++|+++..  +    
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~----   72 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIGNFQD--E----   72 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGGGCSCHHHHHHHHHHHGGGCS--H----
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H----
Confidence            45678899999999999999999999876431            25888999999999999999999999863  1    


Q ss_pred             HHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHH
Q 014945          320 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA  395 (415)
Q Consensus       320 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl  395 (415)
                           ..++.|..++.++ ++.||..|+|+|+++..  ++         .++.|+.++.++++.|+..|+++|.++
T Consensus        73 -----~a~~~L~~~L~d~-~~~VR~~A~~aL~~~~~--~~---------a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           73 -----RAVEPLIKLLEDD-SGFVRSGAARSLEQIGG--ER---------VRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             -----HHHHHHHHHHHHC-CTHHHHHHHHHHHHHCS--HH---------HHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             -----HHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc--HH---------HHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence                 2478899999888 99999999999999862  22         477888899999999999999998753

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.80  E-value=4e-08  Score=84.89  Aligned_cols=191  Identities=13%  Similarity=0.185  Sum_probs=140.6

Q ss_pred             HHHHhhcCCCChHHHHHHHHHHHH-HhCCCchhhHHHHh-CCChHHHHHhh-CCCCHHHHHHHHHHHHHhcCCC--chhH
Q 014945          118 RFIEFLSRDDFPQLQFEAAWALTN-IASGTSENTRVVID-HGAVPIFVRLL-SSPTDDVREQAVWALGNVAGDS--PKCR  192 (415)
Q Consensus       118 ~L~~ll~~~~~~~i~~~a~~~L~~-l~~~~~~~~~~~~~-~g~i~~L~~ll-~~~~~~v~~~a~~~L~nl~~~~--~~~~  192 (415)
                      .+.+.+.+.+ ..-|..|+..|.. ++.++++....-.+ ..++..|...+ .+.+..++..|+.+|+.|+.+-  +.+.
T Consensus        20 ~f~~~l~s~~-w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~   98 (249)
T 2qk1_A           20 DFQERITSSK-WKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFS   98 (249)
T ss_dssp             THHHHHTCSS-HHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSC
T ss_pred             hHHHHhhcCC-HHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccccc
Confidence            4566678888 8999999999999 87654432200001 13467778888 6889999999999999998432  2232


Q ss_pred             -HHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC-CCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc
Q 014945          193 -DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD  270 (415)
Q Consensus       193 -~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~  270 (415)
                       .....  .++.++..+ .+....++..+..++..++..- +.........+++.|...|.+.++.++..++.+|..++.
T Consensus        99 ~~y~~~--llp~ll~~l-~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~  175 (249)
T 2qk1_A           99 KDYVSL--VFTPLLDRT-KEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMK  175 (249)
T ss_dssp             HHHHHH--HHHHHHHGG-GCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH--HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence             22222  678888888 6667889999999999998764 211111256788999999999999999999999999885


Q ss_pred             CCh---HHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 014945          271 GTN---DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT  312 (415)
Q Consensus       271 ~~~---~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~  312 (415)
                      ...   ......+...+++.+..++.+++..+|..|..+++.++.
T Consensus       176 ~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          176 EEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             HCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             HcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            443   333333335789999999999999999999999999874

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.80  E-value=1.1e-07  Score=85.53  Aligned_cols=242  Identities=14%  Similarity=0.100  Sum_probs=138.7

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (415)
Q Consensus        72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  151 (415)
                      .+..+.+-++++++-++-.|++.++++..   .+-.+.     +.+.+.+.+.+.+ +-++..|+.+..++....++..+
T Consensus       105 v~Nsl~kDl~~~N~~iR~lALRtL~~I~~---~~m~~~-----l~~~lk~~L~d~~-pyVRk~A~l~~~kL~~~~pe~v~  175 (355)
T 3tjz_B          105 VTSSLTKDMTGKEDSYRGPAVRALCQITD---STMLQA-----IERYMKQAIVDKV-PSVSSSALVSSLHLLKCSFDVVK  175 (355)
T ss_dssp             GHHHHHHHHHSSCHHHHHHHHHHHHHHCC---TTTHHH-----HHHHHHHHHTCSS-HHHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHhhcCCCcHhHHHHHHHHHhcCCC---HHHHHH-----HHHHHHHHcCCCC-HHHHHHHHHHHHHHhccCHHHHH
Confidence            56888899999999999999999999853   222332     4577888999998 99999999999999987766432


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccch--hHhHHHHHHHHHHHhhh
Q 014945          152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA--KLSMLRNATWTLSNFCR  229 (415)
Q Consensus       152 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~--~~~~~~~a~~~l~~l~~  229 (415)
                           +.++.+-.++.+.++-++..|+.+|..+...+..         .+..++..+....  ++-.+...+..+..++.
T Consensus       176 -----~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~---------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~  241 (355)
T 3tjz_B          176 -----RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL---------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLE  241 (355)
T ss_dssp             -----TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--
T ss_pred             -----HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH---------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhcc
Confidence                 5788999999999999999999999999875432         3445565553321  34444444444444443


Q ss_pred             CCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHH
Q 014945          230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN  309 (415)
Q Consensus       230 ~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~n  309 (415)
                      .+   ........++.+...|++.++.|..+|++++..+...+..    .. ..++..|..+|.++++.++-.|++.|..
T Consensus       242 ~d---~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~----~~-~~a~~~L~~fLss~d~niryvaLr~L~~  313 (355)
T 3tjz_B          242 DE---DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK----EL-APAVSVLQLFCSSPKAALRYAAVRTLNK  313 (355)
T ss_dssp             ------------------CCCCCSSHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSHHHHHHCC--
T ss_pred             cc---chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH----HH-HHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence            32   1123356778888899999999999999999998653322    11 2345677778888999999999999999


Q ss_pred             hhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHH
Q 014945          310 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI  350 (415)
Q Consensus       310 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l  350 (415)
                      ++...+...+     ..-..+..++.++ +..+.-.|.-+|
T Consensus       314 l~~~~P~~v~-----~~n~~ie~li~d~-n~sI~t~Aittl  348 (355)
T 3tjz_B          314 VAMKHPSAVT-----ACNLDLENLVTDA-NRSIATLAITTL  348 (355)
T ss_dssp             -----------------------------------------
T ss_pred             HHHHCcHHHH-----HHHHHHHHHccCC-cHhHHHHHHHHh
Confidence            9987774433     2334577888888 777766655554

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.80  E-value=1.1e-06  Score=88.92  Aligned_cols=303  Identities=13%  Similarity=0.154  Sum_probs=214.8

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCc---
Q 014945           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS---  147 (415)
Q Consensus        71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~---  147 (415)
                      ..+..+++.+...+......++..+..++... ..  ...+..+++..|.+.+.+.. ..  ..|+.++..++....   
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~k~-~~--~~a~~~~~~~~~~~~~~~   87 (986)
T 2iw3_A           14 KVLEELFQKLSVATADNRHEIASEVASFLNGN-II--EHDVPEHFFGELAKGIKDKK-TA--ANAMQAVAHIANQSNLSP   87 (986)
T ss_dssp             HHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSS-CS--SSSCCHHHHHHHHHHHTSHH-HH--HHHHHHHHHHTCTTTCCT
T ss_pred             HHHHHHHhhccccchhHHHHHHHHHHHHHhcc-cc--ccccchhHHHHHHHHHhccC-CH--HHHHHHHHHHHHhcCCCC
Confidence            34566777777655666677888888876543 11  11222367888888888765 33  888999999985321   


Q ss_pred             hhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHh
Q 014945          148 ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF  227 (415)
Q Consensus       148 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l  227 (415)
                      ..-..++  +.+|.++..+.+....++..|-.++..++..-+...-    ...++.|+..+...........++.++..|
T Consensus        88 ~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~  161 (986)
T 2iw3_A           88 SVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAM  161 (986)
T ss_dssp             TTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             CcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence            2222333  5789999998888889999988888887754332211    226888999885555788999999999999


Q ss_pred             hhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChH-HHHHHHHcCcHHHHHHhcCCCChhhHHHHHHH
Q 014945          228 CRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND-KIQAVIEAGVCPRLVELLRHPSPSVLIPALRT  306 (415)
Q Consensus       228 ~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~-~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~  306 (415)
                      +...+......+..++|.+...+.+..++|...|..++..+|.--++ .+     ...+|.|++.+.+++.  ...++..
T Consensus       162 ~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~-----~~~~~~~~~~~~~p~~--~~~~~~~  234 (986)
T 2iw3_A          162 VDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI-----ERFIPSLIQCIADPTE--VPETVHL  234 (986)
T ss_dssp             HHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT-----GGGHHHHHHHHHCTTH--HHHHHHH
T ss_pred             HHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch-----hhhHHHHHHHhcChhh--hHHHHHH
Confidence            97654333445578899999999999999999988888887742211 11     2468999999987754  4556666


Q ss_pred             HHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc--CCHHHHHHHHHcCCHHHHHHHhcc-CCHH
Q 014945          307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA--GNVNQIQAIIEAGIIGPLVNLLLN-AEFE  383 (415)
Q Consensus       307 l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~--~~~~~~~~l~~~~~i~~L~~~l~~-~~~~  383 (415)
                      |+....-.......+  +=.+|.|..-|... ...+++.++-++.|+|.  .+|.....++.. ++|.|-+.... .+|+
T Consensus       235 l~~~tfv~~v~~~~l--~~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~-l~p~~~~~~~~~~~pe  310 (986)
T 2iw3_A          235 LGATTFVAEVTPATL--SIMVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIAPFLGK-LLPGLKSNFATIADPE  310 (986)
T ss_dssp             HTTCCCCSCCCHHHH--HHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHHHHHTT-THHHHHHHTTTCCSHH
T ss_pred             hhcCeeEeeecchhH--HHHHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHhhhhhh-hhhHHHHHhhccCCHH
Confidence            666554332111111  01367788888877 88899999999999998  788888887765 88888887775 7899


Q ss_pred             HHHHHHHHHHHHh
Q 014945          384 IKKEAAWAISNAT  396 (415)
Q Consensus       384 v~~~a~~aL~nl~  396 (415)
                      +|..|..|+..+.
T Consensus       311 ~r~~~~~a~~~l~  323 (986)
T 2iw3_A          311 AREVTLRALKTLR  323 (986)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9998888888773

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.79  E-value=2.7e-08  Score=85.97  Aligned_cols=190  Identities=10%  Similarity=0.081  Sum_probs=139.5

Q ss_pred             HHHHhccchhHhHHHHHHHHHHH-hhhCCCCCc--hhhhhchHHHHHHhh-cCCChhHHHHHHHHHHHhccCCh-HHHH-
Q 014945          204 LLAQFNEHAKLSMLRNATWTLSN-FCRGKPQPL--FEQTRPALPALERLI-HSNDDEVLTDACWALSYLSDGTN-DKIQ-  277 (415)
Q Consensus       204 L~~~l~~~~~~~~~~~a~~~l~~-l~~~~~~~~--~~~~~~~l~~l~~lL-~~~d~~v~~~a~~~l~~l~~~~~-~~~~-  277 (415)
                      +...+ .+.+..-+..++..|.. ++.+.+...  ......++..|.+.+ .+.+..++..|+.+++.++.+-. .... 
T Consensus        21 f~~~l-~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           21 FQERI-TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             HHHHH-TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             HHHHh-hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            44555 67788889999999999 886533222  222346688888899 68899999999999999985332 1111 


Q ss_pred             HHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHH-HHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcC
Q 014945          278 AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCI-INHQALPCLLDLLTQNYKKSIKKEACWTISNITAG  356 (415)
Q Consensus       278 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~-~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~  356 (415)
                      ... .-+++.++..+.+....|+..+..++-.++...+...... ++ .+++.|...+++. ++.+|..++.+|+.++..
T Consensus       100 ~y~-~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~-~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~  176 (249)
T 2qk1_A          100 DYV-SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNE-DMLKDILEHMKHK-TPQIRMECTQLFNASMKE  176 (249)
T ss_dssp             HHH-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTH-HHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHH-HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHH
Confidence            122 2368999999999889999998888888886442110000 00 3567888999999 999999999999999863


Q ss_pred             CH---HHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhC
Q 014945          357 NV---NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  397 (415)
Q Consensus       357 ~~---~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~  397 (415)
                      .+   ......+...++|.|..++.+.+++||..|..+++.++.
T Consensus       177 ~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          177 EKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             CCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             cCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            22   444455534599999999999999999999999999874

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.69  E-value=1.1e-05  Score=74.36  Aligned_cols=319  Identities=13%  Similarity=0.110  Sum_probs=192.9

Q ss_pred             cHHHHHHhhc-CCCHHHHHHHHHHHHHHhccCCC---CchhHHHhc-CchHHHHHhhcCCCChHHHHHHHHHHHHHhCCC
Q 014945           72 SLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERS---PPINEVIQS-GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT  146 (415)
Q Consensus        72 ~i~~l~~~l~-~~~~~~~~~a~~~l~~l~~~~~~---~~~~~~~~~-g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~  146 (415)
                      ....++++|. ..+.+.....+..+..++... +   .....+.+. .....+.....+.+++-....+..++..++..+
T Consensus        78 ~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~-~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~  156 (480)
T 1ho8_A           78 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSD-KYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG  156 (480)
T ss_dssp             THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCS-SSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHHhhcChHHHHHHHHHHHHHHHhcC-cchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccC
Confidence            5677889888 467888888888898888754 2   112233332 222223332223442455566666666665433


Q ss_pred             chhhHHHHhCCChH--HHHHhhCC-CCHHHHHHHHHHHHHhcCCCchhHHHHHhcC--ChHHHHHHhcc-----------
Q 014945          147 SENTRVVIDHGAVP--IFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNG--ALMPLLAQFNE-----------  210 (415)
Q Consensus       147 ~~~~~~~~~~g~i~--~L~~ll~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g--~i~~L~~~l~~-----------  210 (415)
                      +...+.+-  ..+.  -++..|.+ ++...+..++.+|..+....+ +|..+.+.+  .+++++.++..           
T Consensus       157 ~~~~~~l~--~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~-~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~  233 (480)
T 1ho8_A          157 LHNVKLVE--KLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPE-YRDVIWLHEKKFMPTLFKILQRATDSQLATRIV  233 (480)
T ss_dssp             TCCHHHHH--HHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHH-HHHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred             CccHhHHH--HHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchh-HHHHHHHcccchhHHHHHHHHHhhccccccccc
Confidence            33211111  1122  34444544 234556788899988887655 688777643  35666554421           


Q ss_pred             -----chhHhHHHHHHHHHHHhhhCCCCCchhhhhc--hHHHHHHhhcC-CChhHHHHHHHHHHHhccCCh----HHHH-
Q 014945          211 -----HAKLSMLRNATWTLSNFCRGKPQPLFEQTRP--ALPALERLIHS-NDDEVLTDACWALSYLSDGTN----DKIQ-  277 (415)
Q Consensus       211 -----~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~--~l~~l~~lL~~-~d~~v~~~a~~~l~~l~~~~~----~~~~-  277 (415)
                           ....+++..++.+++-|+............+  .++.|+..++. ..++|.+-++.++.|+.....    .... 
T Consensus       234 ~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~  313 (480)
T 1ho8_A          234 ATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQ  313 (480)
T ss_dssp             -----CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHH
T ss_pred             cccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHH
Confidence                 1146678899999999987743211111122  23566666655 468899999999999987652    2222 


Q ss_pred             HHHHcCcHHHHHHhcCC---CChhhHHHHHHHHHHhh-------cCChHHHHHHH-------------------------
Q 014945          278 AVIEAGVCPRLVELLRH---PSPSVLIPALRTVGNIV-------TGDDMQTQCII-------------------------  322 (415)
Q Consensus       278 ~~~~~~~i~~L~~lL~~---~~~~v~~~a~~~l~nl~-------~~~~~~~~~~~-------------------------  322 (415)
                      .++..++ ..++..|..   .|+++.... ..|....       +..+++..++.                         
T Consensus       314 ~~~~~~~-l~~l~~L~~rk~~Dedl~edl-~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e  391 (480)
T 1ho8_A          314 LLLLGNA-LPTVQSLSERKYSDEELRQDI-SNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKK  391 (480)
T ss_dssp             HHHHHCH-HHHHHHHHSSCCSSHHHHHHH-HHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSS
T ss_pred             HHHHccc-hHHHHHHhhCCCCcHHHHHHH-HHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHh
Confidence            3333445 445566543   344433221 1211111       01112222221                         


Q ss_pred             -HCCChHHHHHHhcC---------CCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHH
Q 014945          323 -NHQALPCLLDLLTQ---------NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAI  392 (415)
Q Consensus       323 -~~~~l~~L~~ll~~---------~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL  392 (415)
                       +..++..|.++|.+         +.++.+..-||.=++.++...|..+..+-+.|+=..++++|.++|++|+.+|+.|+
T Consensus       392 ~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~av  471 (480)
T 1ho8_A          392 DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKAT  471 (480)
T ss_dssp             GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHH
Confidence             12357889999973         22788999999999999998788777777889999999999999999999999999


Q ss_pred             HHHh
Q 014945          393 SNAT  396 (415)
Q Consensus       393 ~nl~  396 (415)
                      ..+.
T Consensus       472 Qklm  475 (480)
T 1ho8_A          472 QAII  475 (480)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8775

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=98.68  E-value=8.9e-06  Score=84.16  Aligned_cols=300  Identities=12%  Similarity=0.086  Sum_probs=173.0

Q ss_pred             CCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHH-HhhcCCCChHHHHHHHHHHHHHhCCC---c--hhhHHHHh
Q 014945           82 SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFI-EFLSRDDFPQLQFEAAWALTNIASGT---S--ENTRVVID  155 (415)
Q Consensus        82 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~-~ll~~~~~~~i~~~a~~~L~~l~~~~---~--~~~~~~~~  155 (415)
                      ++++++...++.++...++   --+...++..++++.+. .++.  + ++++..|+.||+.+....   +  +....+..
T Consensus       206 ~~~~~l~~~~L~~l~s~l~---WI~i~~i~~~~ll~~l~~~~L~--~-~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~  279 (1023)
T 4hat_C          206 GASSSLIVATLESLLRYLH---WIPYRYIYETNILELLSTKFMT--S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL  279 (1023)
T ss_dssp             CSSCHHHHHHHHHHHHHTT---TSCTHHHHSSSHHHHHHTHHHH--S-HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHH---hCCHHHhcchhHHHHHHHHHcC--C-HHHHHHHHHHHHHHHccccCCchHHHHHHHHH
Confidence            4566777778888888874   35567788889999999 8885  3 789999999999998732   2  12211111


Q ss_pred             --CCChHHH--------------HHhhCCCCHHHHHHHHHHHHHhcC-------CCchhHHHHHhcCChHHHHHHhccch
Q 014945          156 --HGAVPIF--------------VRLLSSPTDDVREQAVWALGNVAG-------DSPKCRDLVLSNGALMPLLAQFNEHA  212 (415)
Q Consensus       156 --~g~i~~L--------------~~ll~~~~~~v~~~a~~~L~nl~~-------~~~~~~~~~~~~g~i~~L~~~l~~~~  212 (415)
                        .+.++.+              ...-...+.+.....+..+..+..       ..+..+..+.  .++..|+.+- ..+
T Consensus       280 lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~--~~l~~Ll~~~-~~~  356 (1023)
T 4hat_C          280 FFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQYLIQLS-KIE  356 (1023)
T ss_dssp             HHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHH--HHHHHHHHHT-TSS
T ss_pred             HHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHH--HHHHHHHHhh-CCC
Confidence              0111111              111122345555555655544432       2222222221  1233444433 455


Q ss_pred             hHhHHHHHHHHHHHhhhCCCC--Cchhhh----hchHHHHHHhhcCCC--------------------hh-HHHHHH-HH
Q 014945          213 KLSMLRNATWTLSNFCRGKPQ--PLFEQT----RPALPALERLIHSND--------------------DE-VLTDAC-WA  264 (415)
Q Consensus       213 ~~~~~~~a~~~l~~l~~~~~~--~~~~~~----~~~l~~l~~lL~~~d--------------------~~-v~~~a~-~~  264 (415)
                      +.++...++..+..+...-..  ......    ..+++.++.-+..++                    ++ ...... .+
T Consensus       357 d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~  436 (1023)
T 4hat_C          357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREV  436 (1023)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHH
Confidence            777888888877777753211  111222    344445554443321                    00 111011 22


Q ss_pred             HHHhccCC-hHHHHHHHHcCcHHHHHHhcCC--CChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcC-----
Q 014945          265 LSYLSDGT-NDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ-----  336 (415)
Q Consensus       265 l~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~--~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~-----  336 (415)
                      |.+++.-. ++..+.     +++.+.+.+.+  .+|..++.+++++|.++.+..+....-.-..+++.|+.++.+     
T Consensus       437 L~~l~~l~~~~~~~~-----~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d  511 (1023)
T 4hat_C          437 LVYLTHLNVIDTEEI-----MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKD  511 (1023)
T ss_dssp             HHHHHHHCHHHHHHH-----HHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHH
T ss_pred             HHHHhccCHHHHHHH-----HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCc
Confidence            22222111 112111     23444444443  579999999999999998876442322233577888888864     


Q ss_pred             CCccchHHHHHHHHHHHhc---CCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCH
Q 014945          337 NYKKSIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSN  401 (415)
Q Consensus       337 ~~~~~v~~~a~~~l~nl~~---~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~  401 (415)
                      + ...++..++|++|..+.   .+++....     ++..|+..+.+++++++..||+++.+++..+..
T Consensus       512 ~-k~~v~~t~~~~lGry~~wl~~~~~~L~~-----vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~  573 (1023)
T 4hat_C          512 N-KAVVASDIMYVVGQYPRFLKAHWNFLRT-----VILKLFEFMHETHEGVQDMACDTFIKIVQKCKY  573 (1023)
T ss_dssp             H-HHHHHHHHHHHHHTCHHHHHHCHHHHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTH
T ss_pred             c-hHHHHHHHHHHHHHHHHHHhccHHHHHH-----HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence            3 45677789999998775   24443333     566788888778899999999999999986554

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.68  E-value=5.5e-09  Score=80.92  Aligned_cols=121  Identities=18%  Similarity=0.184  Sum_probs=93.7

Q ss_pred             cCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhH
Q 014945          113 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR  192 (415)
Q Consensus       113 ~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~  192 (415)
                      ...++.|+.+|++++ +.+|..|+++|+.+...            .++.|+.+|.++++.++..|+++|+++..  +   
T Consensus        11 ~~~~~~l~~~L~~~~-~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~---   72 (131)
T 1te4_A           11 SSGLVPRGSHMADEN-KWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---   72 (131)
T ss_dssp             ----------CCSSC-CCSSSSCCSSTTSCSST------------THHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---
T ss_pred             cccHHHHHHHhcCCC-HHHHHHHHHHHHHhCch------------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H---
Confidence            346788999999988 89999999999876431            26889999999999999999999999852  1   


Q ss_pred             HHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHh
Q 014945          193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL  268 (415)
Q Consensus       193 ~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l  268 (415)
                            ..++.|+..+ .+.++.++..++|+|..+..          ...++.|..+++++++.++..++++|..+
T Consensus        73 ------~a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           73 ------RAVEPLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             ------HHHHHHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             ------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence                  1477888888 77889999999999999862          35788999999999999999999998754

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.58  E-value=5.2e-06  Score=76.44  Aligned_cols=235  Identities=14%  Similarity=0.112  Sum_probs=158.5

Q ss_pred             HHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCC--ChHHHHHhhC----C-------------CCHHHHHHHH
Q 014945          118 RFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHG--AVPIFVRLLS----S-------------PTDDVREQAV  178 (415)
Q Consensus       118 ~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~ll~----~-------------~~~~v~~~a~  178 (415)
                      .++..|........+..++.+|..+... +++|..+.+.+  .++.++.++.    +             ....++.+++
T Consensus       171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l  249 (480)
T 1ho8_A          171 NLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL  249 (480)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred             HHHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence            5666666632256677899999998885 88888887653  3566654332    1             1356788999


Q ss_pred             HHHHHhcCCCchhHHHHHhcCCh--HHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchh-----hhhchHHHHHHhhc
Q 014945          179 WALGNVAGDSPKCRDLVLSNGAL--MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE-----QTRPALPALERLIH  251 (415)
Q Consensus       179 ~~L~nl~~~~~~~~~~~~~~g~i--~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~-----~~~~~l~~l~~lL~  251 (415)
                      .|++-++.+.+ ..+.+...+..  ..|+..+.....+.+.+-++.++.|+....+.....     ...+..+.++..|.
T Consensus       250 l~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~~l~~L~  328 (480)
T 1ho8_A          250 LLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLS  328 (480)
T ss_dssp             HHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccchHHHHHHh
Confidence            99999988776 34555555533  566777766778999999999999999875322211     11122344555553


Q ss_pred             C---CChhHHHHHHHHHHHh-------cc--------------CCh-HHHHHHHHc----------CcHHHHHHhcCC--
Q 014945          252 S---NDDEVLTDACWALSYL-------SD--------------GTN-DKIQAVIEA----------GVCPRLVELLRH--  294 (415)
Q Consensus       252 ~---~d~~v~~~a~~~l~~l-------~~--------------~~~-~~~~~~~~~----------~~i~~L~~lL~~--  294 (415)
                      .   .|+++..+.-.....|       +.              .++ ...+.+..+          .++..|+.+|.+  
T Consensus       329 ~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~  408 (480)
T 1ho8_A          329 ERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKV  408 (480)
T ss_dssp             SSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHH
T ss_pred             hCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhc
Confidence            3   4777665543322222       11              111 111112211          357788888863  


Q ss_pred             --------CChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc
Q 014945          295 --------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA  355 (415)
Q Consensus       295 --------~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~  355 (415)
                              .++.+..-||.=||.++...|..+..+-+.|+-..++.++.++ +++||.+|..++..+..
T Consensus       409 ~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~-d~~Vr~~AL~avQklm~  476 (480)
T 1ho8_A          409 RNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHS-DSRVKYEALKATQAIIG  476 (480)
T ss_dssp             HTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCS-SHHHHHHHHHHHHHHHH
T ss_pred             cccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence                    3677888899999999999998888777889999999999999 99999999999987764

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=98.36  E-value=0.00023  Score=74.71  Aligned_cols=301  Identities=11%  Similarity=0.107  Sum_probs=166.2

Q ss_pred             CCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHH-hhcCCCChHHHHHHHHHHHHHhCCC--ch---hhHHHHh-
Q 014945           83 DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIE-FLSRDDFPQLQFEAAWALTNIASGT--SE---NTRVVID-  155 (415)
Q Consensus        83 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~-ll~~~~~~~i~~~a~~~L~~l~~~~--~~---~~~~~~~-  155 (415)
                      +++.++..++.++..+++   -.+...+.+..+++.+.+ ++.  + ++++..|+.||..+....  +.   ....+.. 
T Consensus       207 ~~~~~~~~aL~~l~~~l~---wi~~~~~~~~~ll~~l~~~~l~--~-~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l  280 (1049)
T 3m1i_C          207 SSSSLIVATLESLLRYLH---WIPYRYIYETNILELLSTKFMT--S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLF  280 (1049)
T ss_dssp             CCHHHHHHHHHHHHHHTT---TSCTHHHHSSSHHHHHHTHHHH--S-HHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHh---hCCHHHHhhhhHHHHHHHHhCC--C-HhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHH
Confidence            456777888888887764   233445666778888774 443  4 899999999999998752  21   1111111 


Q ss_pred             -CCChHHHHH-hh-------------CCCCHHHHHHHHHHHHHhcC-------CCchhHHHHHhcCChHHHHHHhccchh
Q 014945          156 -HGAVPIFVR-LL-------------SSPTDDVREQAVWALGNVAG-------DSPKCRDLVLSNGALMPLLAQFNEHAK  213 (415)
Q Consensus       156 -~g~i~~L~~-ll-------------~~~~~~v~~~a~~~L~nl~~-------~~~~~~~~~~~~g~i~~L~~~l~~~~~  213 (415)
                       .+++..+.. ++             .+.+.+.....+..+..+..       ..+..+..+.  .+++.++... ..++
T Consensus       281 ~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~--~~l~~ll~~~-~~~d  357 (1049)
T 3m1i_C          281 FQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQYLIQLS-KIEE  357 (1049)
T ss_dssp             HHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHH--HHHHHHHHHH-TSSC
T ss_pred             HHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHH--HHHHHHHHHH-cCCc
Confidence             122222221 11             12234444444444443321       1111222211  2445555554 4457


Q ss_pred             HhHHHHHHHHHHHhhh----CCCCC--chhhhhchHHHHHHhhcCC-------------------Ch---hHHHHHHHHH
Q 014945          214 LSMLRNATWTLSNFCR----GKPQP--LFEQTRPALPALERLIHSN-------------------DD---EVLTDACWAL  265 (415)
Q Consensus       214 ~~~~~~a~~~l~~l~~----~~~~~--~~~~~~~~l~~l~~lL~~~-------------------d~---~v~~~a~~~l  265 (415)
                      .++...++..+..++.    .+...  .......+++.++..+..+                   |.   ..+..+..+|
T Consensus       358 ~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L  437 (1049)
T 3m1i_C          358 RELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVL  437 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHH
Confidence            7788888888888877    32111  1123345556666554321                   00   1233344455


Q ss_pred             HHhccCChHHHHHHHHcCcHHHHHHhcC--CCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcC-----CC
Q 014945          266 SYLSDGTNDKIQAVIEAGVCPRLVELLR--HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ-----NY  338 (415)
Q Consensus       266 ~~l~~~~~~~~~~~~~~~~i~~L~~lL~--~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~-----~~  338 (415)
                      ..++.......-.    -+.+.+-..+.  +.+|..++.+++++|.++.+.......-.-..+++.+..+...     + 
T Consensus       438 ~~l~~~~~~~~l~----~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~-  512 (1049)
T 3m1i_C          438 VYLTHLNVIDTEE----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDN-  512 (1049)
T ss_dssp             HHHHHHCHHHHHH----HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHH-
T ss_pred             HHHHccCHHHHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccc-
Confidence            5555322221111    12344444454  3678899999999999987544321111111344444443332     3 


Q ss_pred             ccchHHHHHHHHHHHhc---CCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCHH
Q 014945          339 KKSIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNE  402 (415)
Q Consensus       339 ~~~v~~~a~~~l~nl~~---~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~  402 (415)
                      .+.++..++|+++.++.   .+++....     +++.++..+.++++.|+..|++++.+++..+...
T Consensus       513 ~~~v~~~~~~~lgry~~~~~~~~~~l~~-----vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~  574 (1049)
T 3m1i_C          513 KAVVASDIMYVVGQYPRFLKAHWNFLRT-----VILKLFEFMHETHEGVQDMACDTFIKIVQKCKYH  574 (1049)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            45666679999998775   23332222     5777888888888999999999999999865543

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.34  E-value=9.4e-05  Score=76.83  Aligned_cols=256  Identities=9%  Similarity=0.051  Sum_probs=149.2

Q ss_pred             HHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhC------CCCHHHHHHHHHHHHHhcCCCchhHHHHH---h-cC
Q 014945          130 QLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS------SPTDDVREQAVWALGNVAGDSPKCRDLVL---S-NG  199 (415)
Q Consensus       130 ~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~------~~~~~v~~~a~~~L~nl~~~~~~~~~~~~---~-~g  199 (415)
                      ..|..|..+|..++...+   +.+.. .+++.+...+.      +++...++.|+.+++.++.....+.....   . ..
T Consensus       376 s~R~aa~~~L~~l~~~~~---~~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~  451 (960)
T 1wa5_C          376 TRRRACTDFLKELKEKNE---VLVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN  451 (960)
T ss_dssp             CHHHHHHHHHHHHHHHCH---HHHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred             CcHHHHHHHHHHHHHHcc---hhHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence            466777778877776422   22211 13344444444      45678899999999999853211100000   0 01


Q ss_pred             ChH----HHHHHhccch---hHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 014945          200 ALM----PLLAQFNEHA---KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT  272 (415)
Q Consensus       200 ~i~----~L~~~l~~~~---~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~  272 (415)
                      ..+    .++..+ .++   ++-++..++|+++.++..-   .......+++.++..|.+++..|+..|++++.+++...
T Consensus       452 l~~~l~~~v~p~l-~~~~~~~p~vr~~a~~~lg~~~~~~---~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~  527 (960)
T 1wa5_C          452 VVDFFTKEIAPDL-TSNNIPHIILRVDAIKYIYTFRNQL---TKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIR  527 (960)
T ss_dssp             HHHHHHHHTHHHH-HCSSCSCHHHHHHHHHHHHHTGGGS---CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCB
T ss_pred             HHHHHHHHhHHHh-cCCCCCCceehHHHHHHHHHHHhhC---CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcc
Confidence            111    233334 333   7889999999999999763   23456788999999998888999999999999988631


Q ss_pred             -----------hHHHHHHHHcCcHHHHHHhcCCCC---h--hhHHHHHHHHHHhhcCCh----HHHHHHHHCCChHHHHH
Q 014945          273 -----------NDKIQAVIEAGVCPRLVELLRHPS---P--SVLIPALRTVGNIVTGDD----MQTQCIINHQALPCLLD  332 (415)
Q Consensus       273 -----------~~~~~~~~~~~~i~~L~~lL~~~~---~--~v~~~a~~~l~nl~~~~~----~~~~~~~~~~~l~~L~~  332 (415)
                                 .+.....+ ..+++.|..++....   .  .....++.+|+.++....    .....++. .++..+..
T Consensus       528 ~~~~~~~~~~~~~~l~p~l-~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~-~L~~~l~~  605 (960)
T 1wa5_C          528 ESNTSPAFIFHKEDISNST-EILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLA-QFIEIVTI  605 (960)
T ss_dssp             SCSSSCCBSSCGGGTTTTH-HHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHH-HHHHHHHH
T ss_pred             cccccccccccHHHhhhhH-HHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHH
Confidence                       11111111 235666667776531   1  133456666666654211    22222221 12222222


Q ss_pred             HhcCCCccchHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHh
Q 014945          333 LLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT  396 (415)
Q Consensus       333 ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~  396 (415)
                      ..+++.++..+..++-+++.++.. .++....+.+ .++|.+...|.....+....+...+..+.
T Consensus       606 ~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~-~~~p~~~~iL~~~~~~~~~~~~~i~~~l~  669 (960)
T 1wa5_C          606 MAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVD-SMMPTFLTVFSEDIQEFIPYVFQIIAFVV  669 (960)
T ss_dssp             HTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHH-HHHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred             HHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHH-HHHHHHHHHHHhhhHhhHHHHHHHHHHHH
Confidence            334443566777788888888874 4444444443 37888888887765666666666666665

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.25  E-value=0.0001  Score=76.56  Aligned_cols=305  Identities=10%  Similarity=0.064  Sum_probs=162.3

Q ss_pred             CCCHHHHHHHHHHHHHHhccCC--CCchhHH-HhcCchHH----HHHhhcCC---CChHHHHHHHHHHHHHhCCCchhhH
Q 014945           82 SDDRNIQLDATTQFRKLLSIER--SPPINEV-IQSGVVPR----FIEFLSRD---DFPQLQFEAAWALTNIASGTSENTR  151 (415)
Q Consensus        82 ~~~~~~~~~a~~~l~~l~~~~~--~~~~~~~-~~~g~i~~----L~~ll~~~---~~~~i~~~a~~~L~~l~~~~~~~~~  151 (415)
                      +.++..+..|+.++..++....  ....... ....+.+.    ++..+.++   . +.+|..|+|+++.++..-+  ..
T Consensus       416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~-p~vr~~a~~~lg~~~~~~~--~~  492 (960)
T 1wa5_C          416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPH-IILRVDAIKYIYTFRNQLT--KA  492 (960)
T ss_dssp             --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSC-HHHHHHHHHHHHHTGGGSC--HH
T ss_pred             chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCC-ceehHHHHHHHHHHHhhCC--HH
Confidence            4667788888888888864310  1011100 00012222    33344555   5 8999999999999987421  12


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC-------chh-HHHHHh--cCChHHHHHHhccc----hhHhHH
Q 014945          152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-------PKC-RDLVLS--NGALMPLLAQFNEH----AKLSML  217 (415)
Q Consensus       152 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~-------~~~-~~~~~~--~g~i~~L~~~l~~~----~~~~~~  217 (415)
                      .+  ..+++.++..|.+++..|+..|+++|.+++...       +.+ ++.+..  ...++.|+.++...    .+....
T Consensus       493 ~l--~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~  570 (960)
T 1wa5_C          493 QL--IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAEN  570 (960)
T ss_dssp             HH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSC
T ss_pred             HH--HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCccccc
Confidence            21  246888888888888999999999999998631       111 121111  11344455555332    111123


Q ss_pred             HHHHHHHHHhhhCCCCCchhhhhchHHHHHHhh----cC-CChhHHHHHHHHHHHhccC-ChHHHHHHHHcCcHHHHHHh
Q 014945          218 RNATWTLSNFCRGKPQPLFEQTRPALPALERLI----HS-NDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVEL  291 (415)
Q Consensus       218 ~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL----~~-~d~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~~L~~l  291 (415)
                      ..++.++..++.............+++.+...+    ++ +++.....++.+++.++.. .++... -+...+++.+...
T Consensus       571 e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~-~~~~~~~p~~~~i  649 (960)
T 1wa5_C          571 EFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLP-LLVDSMMPTFLTV  649 (960)
T ss_dssp             HHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHH-HHHHHHHHHHHHH
Confidence            455666665554322222233444555555444    22 3566777788888888765 322222 2333466777777


Q ss_pred             cCCCChhhHHHHHHHHHHhhcCC----h---HHHHHHH------HCCCh---------------------HHHH----HH
Q 014945          292 LRHPSPSVLIPALRTVGNIVTGD----D---MQTQCII------NHQAL---------------------PCLL----DL  333 (415)
Q Consensus       292 L~~~~~~v~~~a~~~l~nl~~~~----~---~~~~~~~------~~~~l---------------------~~L~----~l  333 (415)
                      |..........++.+++.+....    +   .....+.      ..|.+                     +.++    .+
T Consensus       650 L~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~  729 (960)
T 1wa5_C          650 FSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELKGNIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRL  729 (960)
T ss_dssp             HHTTCTTTHHHHHHHHHHHHHHCSSCCTTTGGGHHHHTSGGGGCCTTTHHHHHHHHHHHHHHHGGGCSCSHHHHHHHHHH
T ss_pred             HHhhhHhhHHHHHHHHHHHHHhccCCCHHHHHHHHHHcCHHHhcCCCCchhHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence            76555555655666555544211    0   0000000      00111                     2222    22


Q ss_pred             hcCCCccchHHHHHHHHHHHhcCCHHH-HHHHHHcCCHHHHHHHhccC-CHHHHHHHHHHHHHHh
Q 014945          334 LTQNYKKSIKKEACWTISNITAGNVNQ-IQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNAT  396 (415)
Q Consensus       334 l~~~~~~~v~~~a~~~l~nl~~~~~~~-~~~l~~~~~i~~L~~~l~~~-~~~v~~~a~~aL~nl~  396 (415)
                      +.+. .  ....++++++.++...+.. ....+.. +++.++..+... .++.++..+..++.++
T Consensus       730 ~~~~-~--~~~~a~~ll~~i~~~~~~~~~~~yl~~-i~~~l~~~l~~~~~~~~~~~~l~~~~~~~  790 (960)
T 1wa5_C          730 IASK-A--YEVHGFDLLEHIMLLIDMNRLRPYIKQ-IAVLLLQRLQNSKTERYVKKLTVFFGLIS  790 (960)
T ss_dssp             HTCT-T--THHHHHHHHHHHHHHSCHHHHGGGHHH-HHHHHHHGGGSSCCHHHHHHHHHHHHHHH
T ss_pred             hCCC-c--ccchHHHHHHHHHHHCCHHHHHHHHHH-HHHHHHHHHhhCCcHhHHHHHHHHHHHHH
Confidence            3333 2  2478889999888743333 4444443 666777777654 4566656666666555

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=98.25  E-value=4.5e-05  Score=79.40  Aligned_cols=303  Identities=10%  Similarity=0.036  Sum_probs=169.9

Q ss_pred             CCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHh-------hcCCCC--hHHHHHHHHHHHHHhCCCchhh---
Q 014945           83 DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEF-------LSRDDF--PQLQFEAAWALTNIASGTSENT---  150 (415)
Q Consensus        83 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~l-------l~~~~~--~~i~~~a~~~L~~l~~~~~~~~---  150 (415)
                      ++++.+..|+.++..++...........+. .++|.++.+       +...+.  ++.....+..+..++.......   
T Consensus       256 ~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~  334 (971)
T 2x1g_F          256 DENELAESCLKTMVNIIIQPDCHNYPKTAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSG  334 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSGGGGCHHHHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHcCccccccHHHHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457788889999999987531111111111 123444332       233331  2666667777776664222111   


Q ss_pred             ---------HHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhcCC---------CchhHHHHHh--cCChHHHH
Q 014945          151 ---------RVVIDHGAVPIFVRLLSS-----PTDDVREQAVWALGNVAGD---------SPKCRDLVLS--NGALMPLL  205 (415)
Q Consensus       151 ---------~~~~~~g~i~~L~~ll~~-----~~~~v~~~a~~~L~nl~~~---------~~~~~~~~~~--~g~i~~L~  205 (415)
                               ..+.  ..++.++.+...     .++.+...+++.+..++..         .+.....+..  ...++.++
T Consensus       335 ~~~~~~~~~~~l~--~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~  412 (971)
T 2x1g_F          335 ITSADPELSILVH--RIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILV  412 (971)
T ss_dssp             HHTCCHHHHHHHH--HHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHH
T ss_pred             hccCcccccHHHH--HHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHH
Confidence                     1111  345556655533     4677889999988887531         1111111111  01334444


Q ss_pred             HHhccchh--------------HhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcC-----CChhHHHHHHHHHH
Q 014945          206 AQFNEHAK--------------LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS-----NDDEVLTDACWALS  266 (415)
Q Consensus       206 ~~l~~~~~--------------~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~-----~d~~v~~~a~~~l~  266 (415)
                      ..+...++              ...+..+..++..++...+   ......+++.+...+.+     .+...++.++++++
T Consensus       413 ~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~---~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~  489 (971)
T 2x1g_F          413 RKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN---DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQ  489 (971)
T ss_dssp             HHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT---THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred             HHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH
Confidence            44421111              1355667777777775433   22333444555555543     56778999999999


Q ss_pred             HhccCChHHHHHHHHcCcHHHHHHhcC-CCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHH
Q 014945          267 YLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKE  345 (415)
Q Consensus       267 ~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~  345 (415)
                      .++.+........+. .+++.+..+.. +.++.++..+++++|.++..-....+ .+. .+++.++..+ +   +.++..
T Consensus       490 ~iae~~~~~~~~~l~-~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~-~l~-~vl~~l~~~l-~---~~v~~~  562 (971)
T 2x1g_F          490 SVAEHFGGEEKRQIP-RLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA-YIP-PAINLLVRGL-N---SSMSAQ  562 (971)
T ss_dssp             HTTTC------CHHH-HHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHH-HHHHHHHHHH-H---SSCHHH
T ss_pred             HHHhhcChhhhHHHH-HHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH-HHH-HHHHHHHHHh-C---hHHHHH
Confidence            998775543221111 13332222222 34789999999999999853221111 111 3456666666 2   689999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc--CCHHHHHHHHHHHHHHhCCC
Q 014945          346 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN--AEFEIKKEAAWAISNATSGG  399 (415)
Q Consensus       346 a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~--~~~~v~~~a~~aL~nl~~~~  399 (415)
                      |++++.+++......+...++. ++..+..++..  .+.+.+..+..+++.++...
T Consensus       563 A~~al~~l~~~~~~~l~p~~~~-ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~  617 (971)
T 2x1g_F          563 ATLGLKELCRDCQLQLKPYADP-LLNACHASLNTGRMKNSDSVRLMFSIGKLMSLL  617 (971)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHH-HHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHhccccHHH-HHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhC
Confidence            9999999998666655555543 77788888887  35789999999999998653

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.16  E-value=5.9e-05  Score=66.06  Aligned_cols=158  Identities=14%  Similarity=0.105  Sum_probs=126.0

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (415)
Q Consensus        72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  151 (415)
                      ....+++.|.+.+......++..|..+++.+ .....+++..+++..|+......+ ...+..++.+|.++... .....
T Consensus       119 ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D-~~Fa~EFI~~~GL~~Li~vi~~~~-gN~q~Y~L~AL~~LM~~-v~Gm~  195 (339)
T 3dad_A          119 RVNAILEKLYSSSGPELRRSLFSLKQIFQED-KDLVPEFVHSEGLSCLIRVGAAAD-HNYQSYILRALGQLMLF-VDGML  195 (339)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTC-TTHHHHHHHTTHHHHHHHHHTTSC-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHhhcc-hHHHHHHHHhccHHHHHHHHHhcC-hHHHHHHHHHHHHHHhc-ccccc
Confidence            3567888999888889999999999977754 788899999999999999999987 89999999999999985 45554


Q ss_pred             HHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHh--------cC--ChHHHHHHhc--cchhHhHHH
Q 014945          152 VVI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS--------NG--ALMPLLAQFN--EHAKLSMLR  218 (415)
Q Consensus       152 ~~~-~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~--------~g--~i~~L~~~l~--~~~~~~~~~  218 (415)
                      .++ ....|..+..++.+.+..+...|+..|..++..++.....+.+        .|  .+..++.+|.  ...+.+++.
T Consensus       196 gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~  275 (339)
T 3dad_A          196 GVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLV  275 (339)
T ss_dssp             HHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHH
T ss_pred             chhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHH
Confidence            555 4467888888999888999999999999998766543333322        11  3778889994  256888999


Q ss_pred             HHHHHHHHhhhCCC
Q 014945          219 NATWTLSNFCRGKP  232 (415)
Q Consensus       219 ~a~~~l~~l~~~~~  232 (415)
                      +++..+..+....+
T Consensus       276 ~amtLIN~lL~~ap  289 (339)
T 3dad_A          276 YTVTLINKTLAALP  289 (339)
T ss_dssp             HHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHhcCC
Confidence            98888877776644

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=98.14  E-value=0.00019  Score=74.72  Aligned_cols=250  Identities=10%  Similarity=0.108  Sum_probs=146.0

Q ss_pred             HHHHHHHHHHHHhCCCchh-hHHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHH
Q 014945          131 LQFEAAWALTNIASGTSEN-TRVVIDHGAVPIFVRLLSS-----PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPL  204 (415)
Q Consensus       131 i~~~a~~~L~~l~~~~~~~-~~~~~~~g~i~~L~~ll~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L  204 (415)
                      .|..+..+|..++...++. ...+     ++.+-..+.+     .+...++.++++++.++.......     ...++.+
T Consensus       437 ~R~~~~~~l~~~~~~~~~~~l~~~-----~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l  506 (971)
T 2x1g_F          437 YRQDISDTFMYCYDVLNDYILEIL-----AAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE-----KRQIPRL  506 (971)
T ss_dssp             HHHHHHHHHHHHHTTCTTHHHHHH-----HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHH
Confidence            4566666777766543311 1111     2233333322     566789999999999987654321     1234444


Q ss_pred             HHHh---cc-chhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHH
Q 014945          205 LAQF---NE-HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI  280 (415)
Q Consensus       205 ~~~l---~~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~  280 (415)
                      +.++   .. +.++.++..++|+++.++..-.. .......+++.++..| +  +.++..|++++.+++..........+
T Consensus       507 ~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~-~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~  582 (971)
T 2x1g_F          507 MRVLAEIPYEKLNVKLLGTALETMGSYCNWLME-NPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYA  582 (971)
T ss_dssp             HHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHhcCccccCHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccH
Confidence            4433   21 24788999999999999975322 1245677888888888 2  78999999999999966554433333


Q ss_pred             HcCcHHHHHHhcCCC--ChhhHHHHHHHHHHhhcCCh-HHHHHHHHCCChHHHHH----HhcCCC-ccchHHHHHHHHHH
Q 014945          281 EAGVCPRLVELLRHP--SPSVLIPALRTVGNIVTGDD-MQTQCIINHQALPCLLD----LLTQNY-KKSIKKEACWTISN  352 (415)
Q Consensus       281 ~~~~i~~L~~lL~~~--~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~~l~~L~~----ll~~~~-~~~v~~~a~~~l~n  352 (415)
                       ..++..+..++..+  +...+..++.+++.++..-+ +.....++ .+++.++.    +++... ++..+.....++..
T Consensus       583 -~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~  660 (971)
T 2x1g_F          583 -DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNM  660 (971)
T ss_dssp             -HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Confidence             24667777777663  56788899999999986432 22222222 23333443    333321 22234444444444


Q ss_pred             Hhc-----CC-----------HHHHHHHHHcCCHHHHHHHhcc--CCHHHHHHHHHHHHHHhC
Q 014945          353 ITA-----GN-----------VNQIQAIIEAGIIGPLVNLLLN--AEFEIKKEAAWAISNATS  397 (415)
Q Consensus       353 l~~-----~~-----------~~~~~~l~~~~~i~~L~~~l~~--~~~~v~~~a~~aL~nl~~  397 (415)
                      ++.     +.           ++....+. ..+++.+..++..  .+..+.+.++++++.++.
T Consensus       661 L~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~  722 (971)
T 2x1g_F          661 ISTLFSSLNTDVDEQATDQPIVQPVLLVM-QRTMPIFKRIAEMWVEEIDVLEAACSAMKHAIT  722 (971)
T ss_dssp             HHHHHHHHTC-------------CCHHHH-HTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcCCCcCcccccccCCCchHHHH-HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence            432     11           11112222 3478888888764  367999999999999764

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=98.10  E-value=0.00014  Score=75.62  Aligned_cols=314  Identities=12%  Similarity=0.081  Sum_probs=169.5

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHH----h--cCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCc
Q 014945           74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI----Q--SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS  147 (415)
Q Consensus        74 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~----~--~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~  147 (415)
                      +.+++.+  ++++.+..|+.++..+++....+.....+    .  .+..+.+...+...+ .+.....+.++..++...+
T Consensus       244 ~~l~~~l--~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d-~~~~~~~~~l~~~~~~~~~  320 (963)
T 2x19_B          244 QAAFAAL--QDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGD-METSHGICRIAVALGENHS  320 (963)
T ss_dssp             HHHHHHT--TSTTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHh--CCchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHhH
Confidence            4444444  35667888999999988753111111111    0  011222222334444 5555566666666654211


Q ss_pred             hhhHHHHh--------CCChHHHHHhhCC-----CCHHHHHHHHHHHHHhcCCC--------chhHHHHHh--cCChHHH
Q 014945          148 ENTRVVID--------HGAVPIFVRLLSS-----PTDDVREQAVWALGNVAGDS--------PKCRDLVLS--NGALMPL  204 (415)
Q Consensus       148 ~~~~~~~~--------~g~i~~L~~ll~~-----~~~~v~~~a~~~L~nl~~~~--------~~~~~~~~~--~g~i~~L  204 (415)
                         ..+.+        ...++.++.+..+     .++.+...++..+..++.+.        +.....+..  ...++.+
T Consensus       321 ---~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l  397 (963)
T 2x19_B          321 ---RALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVL  397 (963)
T ss_dssp             ---HHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence               11110        1345556655554     34556666776666665411        111111110  0123333


Q ss_pred             HHHhccchh--------------HhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhh----cCCChhHHHHHHHHHH
Q 014945          205 LAQFNEHAK--------------LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI----HSNDDEVLTDACWALS  266 (415)
Q Consensus       205 ~~~l~~~~~--------------~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL----~~~d~~v~~~a~~~l~  266 (415)
                      +..+....+              .+.+..+..++..++...+   ......+++.+...+    .+.+...++.++++++
T Consensus       398 l~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~---~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~  474 (963)
T 2x19_B          398 LHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLG---AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQ  474 (963)
T ss_dssp             HHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHH
T ss_pred             HHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence            333321111              1224455556666554322   112233444555555    4567788999999999


Q ss_pred             HhccCChHHHHHHHHcCcHHHHHHhc---CCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchH
Q 014945          267 YLSDGTNDKIQAVIEAGVCPRLVELL---RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIK  343 (415)
Q Consensus       267 ~l~~~~~~~~~~~~~~~~i~~L~~lL---~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~  343 (415)
                      .++.+.....     ...++.++..+   .++++.++..+++++|.++..-.... ..+ ..+++.++..+.+   +.|+
T Consensus       475 ~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl~~l~~~l~~---~~V~  544 (963)
T 2x19_B          475 SIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSVLPLVLHALGN---PELS  544 (963)
T ss_dssp             HHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTHHHHHHHTTC---GGGH
T ss_pred             HHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHHHHHHHHhCC---chHH
Confidence            9987644211     12233333332   34578899999999999986322111 122 3788888888844   6899


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc--CCHHHHHHHHHHHHHHhCCCC-HHHHHHH
Q 014945          344 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN--AEFEIKKEAAWAISNATSGGS-NEQIKYK  407 (415)
Q Consensus       344 ~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~--~~~~v~~~a~~aL~nl~~~~~-~~~~~~l  407 (415)
                      ..||+++.+++...++.....++ +++..|..++..  -+.+.+..+..+++.++...+ .+..+|+
T Consensus       545 ~~A~~al~~l~~~~~~~l~p~~~-~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~  610 (963)
T 2x19_B          545 VSSVSTLKKICRECKYDLPPYAA-NIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNL  610 (963)
T ss_dssp             HHHHHHHHHHHHHTGGGCTTTHH-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            99999999999643332222222 245566666665  356889999999999987655 3443443

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=98.08  E-value=0.0029  Score=65.51  Aligned_cols=297  Identities=12%  Similarity=0.135  Sum_probs=163.8

Q ss_pred             CCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHH-HHhhcCCCChHHHHHHHHHHHHHhCCC-chhhHHHHh--CC
Q 014945           82 SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF-IEFLSRDDFPQLQFEAAWALTNIASGT-SENTRVVID--HG  157 (415)
Q Consensus        82 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L-~~ll~~~~~~~i~~~a~~~L~~l~~~~-~~~~~~~~~--~g  157 (415)
                      ++++++...++.++..+++   --+...+++.++++.+ ..+|.  + ++++..|+.||+.+.... ++....+..  .+
T Consensus       218 ~~~~~lv~~~L~~L~~~~s---WI~i~~i~~~~ll~~L~~~~L~--~-~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~  291 (1073)
T 3gjx_A          218 SQNAPLVHATLETLLRFLN---WIPLGYIFETKLISTLIYKFLN--V-PMFRNVSLKCLTEIAGVSVSQYEEQFETLFTL  291 (1073)
T ss_dssp             CCCHHHHHHHHHHHHHHTT---TSCTHHHHSSSHHHHHHHHTSS--S-HHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHH---hcCHHHhccchHHHHHHHHhcC--C-hHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            4677888888899998874   3456778889999988 47764  3 789999999999988742 222222221  01


Q ss_pred             ChHHHHHhh-------------CCCCHHHHHHHHHHHHHhcCC-------CchhHHHHHhcCChHHHHHHhccchhHhHH
Q 014945          158 AVPIFVRLL-------------SSPTDDVREQAVWALGNVAGD-------SPKCRDLVLSNGALMPLLAQFNEHAKLSML  217 (415)
Q Consensus       158 ~i~~L~~ll-------------~~~~~~v~~~a~~~L~nl~~~-------~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~  217 (415)
                      ++..+..++             .+.+.+....-+..+..+...       .|..+..+..  ++..++.+- ..++.++.
T Consensus       292 ~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~--~l~~ll~~s-~~~d~ei~  368 (1073)
T 3gjx_A          292 TMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALME--ALHYMLLVS-EVEETEIF  368 (1073)
T ss_dssp             HHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHH--HHHHHHHHT-TCSCHHHH
T ss_pred             HHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHH--HHHHHHHHh-CCCcHHHH
Confidence            222222222             112234444444555444321       1111111111  233334433 45678888


Q ss_pred             HHHHHHHHHhhhC----CCC----C-------------chhhhhchHHH----HHHhhcCCC------------------
Q 014945          218 RNATWTLSNFCRG----KPQ----P-------------LFEQTRPALPA----LERLIHSND------------------  254 (415)
Q Consensus       218 ~~a~~~l~~l~~~----~~~----~-------------~~~~~~~~l~~----l~~lL~~~d------------------  254 (415)
                      +.+...+..|...    .+.    .             ......+++..    ++.-+..++                  
T Consensus       369 kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~  448 (1073)
T 3gjx_A          369 KICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMK  448 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECS
T ss_pred             HHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHh
Confidence            8877776655432    110    0             01112333333    333332211                  


Q ss_pred             --h-----hHHHHHHHHHHHhccCC-hHHHHHHHHcCcHHHHHHhcCC--CChhhHHHHHHHHHHhhcCChHHHH-HHHH
Q 014945          255 --D-----EVLTDACWALSYLSDGT-NDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDDMQTQ-CIIN  323 (415)
Q Consensus       255 --~-----~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~--~~~~v~~~a~~~l~nl~~~~~~~~~-~~~~  323 (415)
                        .     ++..+++   .+++.-. ++....     +++.+.+.+..  .+|...+.++|++|.++..-.+... .++-
T Consensus       449 d~~~~~ly~~mrd~L---~~lt~l~~~~~~~i-----~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp  520 (1073)
T 3gjx_A          449 DTDSINLYKNMRETL---VYLTHLDYVDTEII-----MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLV  520 (1073)
T ss_dssp             SCHHHHHHHHHHHHH---HHHHHHCHHHHHHH-----HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH
T ss_pred             hcchHHHHHHHHHHH---HHHhcCCHHHHHHH-----HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHH
Confidence              0     1222233   3333211 222111     23445444443  4688999999999999865443222 2222


Q ss_pred             CCChHHHHHHhcCCC----ccchHHHHHHHHHHHhc---CCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHh
Q 014945          324 HQALPCLLDLLTQNY----KKSIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT  396 (415)
Q Consensus       324 ~~~l~~L~~ll~~~~----~~~v~~~a~~~l~nl~~---~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~  396 (415)
                       .+++.|+.+..++.    ...++...+|++|....   .+++....     ++..|++.+.+.++.|+..|+.|+..++
T Consensus       521 -~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~-----vl~~L~~~m~~~~~~vq~aA~~af~~i~  594 (1073)
T 3gjx_A          521 -TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT-----VVNKLFEFMHETHDGVQDMACDTFIKIA  594 (1073)
T ss_dssp             -HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTCCSTTHHHHHHHHHHHHH
T ss_pred             -HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence             45666776665441    23466667799998765   23443333     5778888888889999999999999999


Q ss_pred             CCCCH
Q 014945          397 SGGSN  401 (415)
Q Consensus       397 ~~~~~  401 (415)
                      ..+..
T Consensus       595 ~~C~~  599 (1073)
T 3gjx_A          595 QKCRR  599 (1073)
T ss_dssp             HHTGG
T ss_pred             HHHHH
Confidence            77654

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=98.03  E-value=2.8e-05  Score=80.27  Aligned_cols=303  Identities=11%  Similarity=0.023  Sum_probs=165.1

Q ss_pred             CCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCch--hhHHHHhCCCh
Q 014945           82 SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE--NTRVVIDHGAV  159 (415)
Q Consensus        82 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~--~~~~~~~~g~i  159 (415)
                      ++++.....++.++...++   -.+...++..++++.+.++|.+   ++++..|+.||+.+......  .+..++..=.+
T Consensus       204 ~~~~~l~~~~L~~l~s~i~---wi~~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L  277 (980)
T 3ibv_A          204 AKNYGTVGLCLQVYAQWVS---WININLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNILNL  277 (980)
T ss_dssp             TTCHHHHHHHHHHHHHHTT---TSCHHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHh---hcCHHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhH
Confidence            4778888899999999875   3456677778899999999875   78999999999998875432  22222221001


Q ss_pred             HHHHHhhC--CCCHHHHHHHHHHHHHhc------CCCc-----hhHHH--HHhcCChHHHHHHhccchhHhHHHHHHHHH
Q 014945          160 PIFVRLLS--SPTDDVREQAVWALGNVA------GDSP-----KCRDL--VLSNGALMPLLAQFNEHAKLSMLRNATWTL  224 (415)
Q Consensus       160 ~~L~~ll~--~~~~~v~~~a~~~L~nl~------~~~~-----~~~~~--~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l  224 (415)
                      ...+.-+.  ..|.+..+..+..+..++      ...+     +.+..  -.-.+.++.++.++ .+++.++...++..+
T Consensus       278 ~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~-~~~~deVs~~t~~Fw  356 (980)
T 3ibv_A          278 NLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYL-SDDYDETSTAVFPFL  356 (980)
T ss_dssp             HHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHH-TCSSHHHHHTTHHHH
T ss_pred             HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHh-CCCchhHHHHHHHHH
Confidence            11122122  356666554444443321      1111     11100  11124677777887 445556666666666


Q ss_pred             HHhhhCC---CC--Cch----hhhhchHHHHHHhhcCCC----------------hhHHHHHHHHHHHh-ccCChHH-HH
Q 014945          225 SNFCRGK---PQ--PLF----EQTRPALPALERLIHSND----------------DEVLTDACWALSYL-SDGTNDK-IQ  277 (415)
Q Consensus       225 ~~l~~~~---~~--~~~----~~~~~~l~~l~~lL~~~d----------------~~v~~~a~~~l~~l-~~~~~~~-~~  277 (415)
                      ..+....   +.  ...    .....+++.++.-+..++                .+.|.... .+... +.-.++. ..
T Consensus       357 ~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~  435 (980)
T 3ibv_A          357 SDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSS  435 (980)
T ss_dssp             HHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHH
Confidence            6555321   11  111    223444555554443211                12444444 33222 2212211 11


Q ss_pred             HHHHcCcHHHHHHhcC---CCChhhHHHHHHHHHHhhcCChHHHHHHH-HC----CChHHHHHHhc-----CCCccchHH
Q 014945          278 AVIEAGVCPRLVELLR---HPSPSVLIPALRTVGNIVTGDDMQTQCII-NH----QALPCLLDLLT-----QNYKKSIKK  344 (415)
Q Consensus       278 ~~~~~~~i~~L~~lL~---~~~~~v~~~a~~~l~nl~~~~~~~~~~~~-~~----~~l~~L~~ll~-----~~~~~~v~~  344 (415)
                      .+.+ -+.+.+.+.+.   +.+|..++.++.+|+.++.+-......+. ..    .+++.+..++.     .+ .+.|+.
T Consensus       436 ~~~~-~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~-hp~V~~  513 (980)
T 3ibv_A          436 YMYS-AITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHP-HPLVQL  513 (980)
T ss_dssp             HHHH-HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCC-CHHHHH
T ss_pred             HHHH-HHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCC-CHHHHH
Confidence            1111 11222333342   34688999999999999987542111100 01    23455555554     45 789999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHH------hccCCHHHHHHHHHHHHHHhCCCC
Q 014945          345 EACWTISNITAGNVNQIQAIIEAGIIGPLVNL------LLNAEFEIKKEAAWAISNATSGGS  400 (415)
Q Consensus       345 ~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~------l~~~~~~v~~~a~~aL~nl~~~~~  400 (415)
                      .++|+++..+.--..      ....++.++..      +.+++.+|+..|+.++.+++..+.
T Consensus       514 ~~~~~l~rys~~~~~------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~  569 (980)
T 3ibv_A          514 LYMEILVRYASFFDY------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIK  569 (980)
T ss_dssp             HHHHHHHHTGGGGGT------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhc------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhh
Confidence            999999998862111      11234444443      345678899999999999987654

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.02  E-value=0.0025  Score=64.79  Aligned_cols=261  Identities=12%  Similarity=0.106  Sum_probs=176.4

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCC-CCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCC-chh
Q 014945           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIER-SPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT-SEN  149 (415)
Q Consensus        72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~-~~~  149 (415)
                      .+..+.+.+.+....  ..|+..+..++.... .++. +..--+.+|.++..+.+.. ..++..|-.++..+...- ++.
T Consensus        55 ~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~-e~~~~~~~~~~~~~~~dk~-~~v~~aa~~~~~~~~~~~~~~a  130 (986)
T 2iw3_A           55 FFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSV-EPYIVQLVPAICTNAGNKD-KEIQSVASETLISIVNAVNPVA  130 (986)
T ss_dssp             HHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTT-HHHHHTTHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSCGGG
T ss_pred             HHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCc-ccchHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHhCCHHH
Confidence            455666666653332  778888888764332 2233 2222257999999999888 889888877777666532 333


Q ss_pred             hHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhh
Q 014945          150 TRVVIDHGAVPIFVRLLSSP-TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  228 (415)
Q Consensus       150 ~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~  228 (415)
                      . .    .++|.|+..|.+. ....+..|+.++..++...+..-...+ ...+|.+...+ -+..+++...+..++..+|
T Consensus       131 ~-~----~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~-~d~k~~v~~~~~~~~~~~~  203 (986)
T 2iw3_A          131 I-K----ALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRM-PELIPVLSETM-WDTKKEVKAAATAAMTKAT  203 (986)
T ss_dssp             H-H----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHH-HHHHHHHHHHT-TCSSHHHHHHHHHHHHHHG
T ss_pred             H-H----HHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhc-cchhcchHhhc-ccCcHHHHHHHHHHHHHHH
Confidence            3 2    3588999988654 578899999999999976653211111 12566666666 6778899999999999999


Q ss_pred             hCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC---ChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHH
Q 014945          229 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR  305 (415)
Q Consensus       229 ~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~  305 (415)
                      ..-.+.+   +.+.+|.|++.+.+++.  ...++..|+.-+--   ...... +    ++|.|..-|...+..+...++-
T Consensus       204 ~~~~n~d---~~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l~-~----~~p~l~r~l~~~~~~~~r~~~~  273 (986)
T 2iw3_A          204 ETVDNKD---IERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATLS-I----MVPLLSRGLNERETGIKRKSAV  273 (986)
T ss_dssp             GGCCCTT---TGGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHHH-H----HHHHHHHHHTSSSHHHHHHHHH
T ss_pred             hcCCCcc---hhhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhHH-H----HHHHHHhhhccCcchhheeeEE
Confidence            7644333   46789999999987743  34455555544322   111111 1    3577888888888888999999


Q ss_pred             HHHHhhcC--ChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHh
Q 014945          306 TVGNIVTG--DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT  354 (415)
Q Consensus       306 ~l~nl~~~--~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~  354 (415)
                      ++.|+|.-  ++..... +-..++|-+.+....-.+|++|..|..++..+.
T Consensus       274 ~~~n~~~lv~~~~~~~~-f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~  323 (986)
T 2iw3_A          274 IIDNMCKLVEDPQVIAP-FLGKLLPGLKSNFATIADPEAREVTLRALKTLR  323 (986)
T ss_dssp             HHHHHHTTCCCHHHHHH-HHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHH
T ss_pred             EEcchhhhcCCHHHHhh-hhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence            99999963  4444443 344788888887776668999988888877664

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.01  E-value=5.6e-05  Score=66.22  Aligned_cols=155  Identities=14%  Similarity=0.108  Sum_probs=121.8

Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHH-
Q 014945          244 PALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII-  322 (415)
Q Consensus       244 ~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~-  322 (415)
                      ..+++-|.+.+...+..++.-|..+...+......++..+++..|+......+...+..++++++++....+ ....++ 
T Consensus       121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~-Gm~gvvs  199 (339)
T 3dad_A          121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVD-GMLGVVA  199 (339)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHH-HHHHHHH
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccc-cccchhC
Confidence            345566667788888999999998665666778889999999999999999999999999999999998644 444455 


Q ss_pred             HCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHH--------c--CCHHHHHHHhc---cCCHHHHHHHH
Q 014945          323 NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE--------A--GIIGPLVNLLL---NAEFEIKKEAA  389 (415)
Q Consensus       323 ~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~--------~--~~i~~L~~~l~---~~~~~v~~~a~  389 (415)
                      ...++..+..++.+. +..|.+.|...|..++..++.....+.+        .  ..++.|+.+|.   ..|.+++..|.
T Consensus       200 ~~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am  278 (339)
T 3dad_A          200 HSDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV  278 (339)
T ss_dssp             CHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence            347889999999976 8999999999999998754333322221        1  23789999997   68899999998


Q ss_pred             HHHHHHhCCCC
Q 014945          390 WAISNATSGGS  400 (415)
Q Consensus       390 ~aL~nl~~~~~  400 (415)
                      ..+..+..+++
T Consensus       279 tLIN~lL~~ap  289 (339)
T 3dad_A          279 TLINKTLAALP  289 (339)
T ss_dssp             HHHHHHHHHCS
T ss_pred             HHHHHHHhcCC
Confidence            88888776655

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.93  E-value=8.9e-05  Score=68.92  Aligned_cols=259  Identities=12%  Similarity=0.071  Sum_probs=166.4

Q ss_pred             hhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCc
Q 014945           68 KKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS  147 (415)
Q Consensus        68 ~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~  147 (415)
                      +..+-...|+..|-++.++.|.-|+..||.++...... .      |-.       ...+ .   ..|+++++-++-+  
T Consensus       171 WPfqfcE~L~~DLFdp~WEiRHGAALGLREILR~hG~G-A------GR~-------~~~N-~---DLAvRLLCVLALD--  230 (800)
T 3oc3_A          171 NVLDFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNG-G------DIQ-------IRVD-S---KLFSKIYEILVTD--  230 (800)
T ss_dssp             SGGGTTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC-----------CC-------CCCC-T---THHHHHHHHHHHB--
T ss_pred             CHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccC-C------cee-------cccc-H---HHHHHHHHHHHhc--
Confidence            44445678888889999999999999999998654110 0      111       1222 2   4566666666653  


Q ss_pred             hhhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHH
Q 014945          148 ENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN  226 (415)
Q Consensus       148 ~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~  226 (415)
                      .+-             .+.++ --..|||.|+.+|+.+ ..-+.-      ..++..|+..+ .....+++.-++..|.+
T Consensus       231 RFG-------------DYVSDqVVAPVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l-~~~~WEVRHGGLLGLKY  289 (800)
T 3oc3_A          231 KFN-------------DFVDDRTVAPVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFL-DSGDWQVQFSGLIALGY  289 (800)
T ss_dssp             CCB-------------BCSSSSCBCHHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGG-GCSCHHHHHHHHHHHHH
T ss_pred             ccc-------------ccccCeeeeehHHHHHHHHHHH-HhCChh------HHHHHHHHhhc-CCCCeeehhhhHHHHHH
Confidence            111             11222 1245899999999988 544431      33455555544 55678888888888888


Q ss_pred             hhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCC--hhhHHHHH
Q 014945          227 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS--PSVLIPAL  304 (415)
Q Consensus       227 l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~--~~v~~~a~  304 (415)
                      +..- -.    ...++++.+...|.+.|++|+..|+.+|.-++  .++....     ++..+...|.+-+  ..-....+
T Consensus       290 L~DL-L~----~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA--~p~~l~~-----LL~iLWd~L~~LDDLSASTgSVM  357 (800)
T 3oc3_A          290 LKEF-VE----DKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP--ITDSLDL-----VLEKCWKNIESEELISVSKTSNL  357 (800)
T ss_dssp             TGGG-CC----CHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC--CSSTHHH-----HHHHHHHHHHTCCSCCTTHHHHH
T ss_pred             HHHH-HH----HHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc--chhhHHH-----HHHHHHHHhhhhcccchhhHHHH
Confidence            8211 11    15778889999999999999999999999988  2222332     3455566654322  12344566


Q ss_pred             HHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHH
Q 014945          305 RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI  384 (415)
Q Consensus       305 ~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v  384 (415)
                      ..|+.++..+...   -.+...+|.|..++.|+ -+.||..+..++..+.  +......        ..-++|-..+.++
T Consensus       358 dLLAkL~s~p~~a---~~dp~LVPRL~PFLRHt-ITSVR~AVL~TL~tfL--~~~~LRL--------IFQNILLE~neeI  423 (800)
T 3oc3_A          358 SLLTKIYRENPEL---SIPPERLKDIFPCFTSP-VPEVRTSILNMVKNLS--EESIDFL--------VAEVVLIEEKDEI  423 (800)
T ss_dssp             HHHHHHHHHCTTC---CCCSGGGGGTGGGGTCS-SHHHHHHHHHHTTTCC--CHHHHHH--------HHHHHHHCSCHHH
T ss_pred             HHHHHHHcCCccc---ccChHHHHHHHhhhcCC-cHHHHHHHHHHHHHHH--hhhHHHH--------HHHHHHhCCcHHH
Confidence            6777777655311   11237899999999999 9999999999998877  2332222        2223455678888


Q ss_pred             HHHHHHHHH
Q 014945          385 KKEAAWAIS  393 (415)
Q Consensus       385 ~~~a~~aL~  393 (415)
                      +..+..+..
T Consensus       424 l~lS~~VWk  432 (800)
T 3oc3_A          424 REMAIKLLK  432 (800)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            887777664

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=97.88  E-value=0.003  Score=65.44  Aligned_cols=157  Identities=14%  Similarity=0.136  Sum_probs=99.1

Q ss_pred             chHHHHHHhhcC--CChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCC-----CChhhHHHHHHHHHHhhcC
Q 014945          241 PALPALERLIHS--NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-----PSPSVLIPALRTVGNIVTG  313 (415)
Q Consensus       241 ~~l~~l~~lL~~--~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-----~~~~v~~~a~~~l~nl~~~  313 (415)
                      ..++.+...+.+  .+...++.++|+++.++.+..+....-.-..+++.|+.++.+     +...++..++|++|.++.-
T Consensus       451 ~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~w  530 (1023)
T 4hat_C          451 IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRF  530 (1023)
T ss_dssp             HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHH
Confidence            344445444543  578899999999999998765432212223467778877753     2334666788999988753


Q ss_pred             ChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHH--------HHHHcCCHHHHHHHhccCCHHHH
Q 014945          314 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQ--------AIIEAGIIGPLVNLLLNAEFEIK  385 (415)
Q Consensus       314 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~--------~l~~~~~i~~L~~~l~~~~~~v~  385 (415)
                      -....+ .+. .++..++..+..+ ++.++..|||++.++|..+.....        ..++ .++..+......-+++-+
T Consensus       531 l~~~~~-~L~-~vl~~L~~~l~~~-~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~-~il~~l~~~~~~l~~~~~  606 (1023)
T 4hat_C          531 LKAHWN-FLR-TVILKLFEFMHET-HEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQ-TIIRDIQKTTADLQPQQV  606 (1023)
T ss_dssp             HHHCHH-HHH-HHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHH-HHHHTHHHHHTTSCHHHH
T ss_pred             HhccHH-HHH-HHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHH-HHHHHHHHHHHhCCHHHH
Confidence            221111 111 3455666666666 788999999999999974332221        0111 134444455555677788


Q ss_pred             HHHHHHHHHHhCCCCH
Q 014945          386 KEAAWAISNATSGGSN  401 (415)
Q Consensus       386 ~~a~~aL~nl~~~~~~  401 (415)
                      ..+..+++.++...+.
T Consensus       607 ~~lyeai~~vi~~~~~  622 (1023)
T 4hat_C          607 HTFYKACGIIISEERS  622 (1023)
T ss_dssp             HHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHHHhCCC
Confidence            8999999999987653

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.87  E-value=0.00058  Score=59.82  Aligned_cols=191  Identities=13%  Similarity=0.113  Sum_probs=127.9

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchh-HHH--hcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCch
Q 014945           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPIN-EVI--QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE  148 (415)
Q Consensus        72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~-~~~--~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~  148 (415)
                      .+| +-+.|.+.++..|..|+..+.+++......... ...  -....+.+-..+.+.+ ..++..++.++..++.....
T Consensus        11 klp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN-~~v~~~al~~l~~~~~~~~~   88 (278)
T 4ffb_C           11 TLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN-VVAQEQAIVALNSLIDAFAS   88 (278)
T ss_dssp             CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS-HHHHHHHHHHHHHHHTTCC-
T ss_pred             cCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHhhh
Confidence            445 667899999999999999999987643211111 111  1234667778888888 89999999999988753211


Q ss_pred             -----hhHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHH
Q 014945          149 -----NTRVVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATW  222 (415)
Q Consensus       149 -----~~~~~~~~g~i~~L~~-ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~  222 (415)
                           ......-..+++.|+. .+.+....++..+..++..++...... ..     .++.++..+ .+.++.++..++.
T Consensus        89 ~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l-~~Knpkv~~~~l~  161 (278)
T 4ffb_C           89 SSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFF-EKKLPKLIAAAAN  161 (278)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGG-GCSCHHHHHHHHH
T ss_pred             hhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHH-hccCHHHHHHHHH
Confidence                 1111112346777876 478888999999998888776332211 11     234455556 6778888888888


Q ss_pred             HHHHhhhCC--C-CCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC
Q 014945          223 TLSNFCRGK--P-QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG  271 (415)
Q Consensus       223 ~l~~l~~~~--~-~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~  271 (415)
                      .|..+....  . .........+++.+..++.+.|+.||..|..++..+-..
T Consensus       162 ~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~  213 (278)
T 4ffb_C          162 CVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV  213 (278)
T ss_dssp             HHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            888776542  1 122334456778888999999999999999999877544

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=97.83  E-value=0.0024  Score=67.01  Aligned_cols=235  Identities=11%  Similarity=0.120  Sum_probs=132.2

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhcC----CCc---hhHHHHHhcCChHHHHHHhccch-----------------
Q 014945          157 GAVPIFVRLLSSPTDDVREQAVWALGNVAG----DSP---KCRDLVLSNGALMPLLAQFNEHA-----------------  212 (415)
Q Consensus       157 g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~----~~~---~~~~~~~~~g~i~~L~~~l~~~~-----------------  212 (415)
                      .+++.++.....++.++...++..+..++.    ...   ..+..+..  .++.++..+....                 
T Consensus       344 ~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~--Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~  421 (1049)
T 3m1i_C          344 NAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQ--LRLVIIENMVRPEEVLVVENDEGEIVREFV  421 (1049)
T ss_dssp             HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHH--HHHHHHHTCCCCTTCCEEECTTSCEEECSS
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH--HHHHHHHhcCCCcceeeeeCCCCcchHhhh
Confidence            356777777677888899999888877765    211   11111111  2333333332110                 


Q ss_pred             -h---HhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhc--CCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHH
Q 014945          213 -K---LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH--SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCP  286 (415)
Q Consensus       213 -~---~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~--~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~  286 (415)
                       +   ......+..+|..++...+   ......+.+.+...+.  +.+...++.++++++.++.........-.-..+++
T Consensus       422 ~d~d~~~~~~~~~~~L~~l~~~~~---~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~  498 (1049)
T 3m1i_C          422 KESDTIQLYKSEREVLVYLTHLNV---IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIK  498 (1049)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHccCH---HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHH
Confidence             0   1234455566666663321   1222334455555554  35678899999999999865433211111123455


Q ss_pred             HHHHhcCC-----CChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHH
Q 014945          287 RLVELLRH-----PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI  361 (415)
Q Consensus       287 ~L~~lL~~-----~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~  361 (415)
                      .+..+...     +.+.++..+++++|.++..-....+ .+. .+++.++..+.++ ++.|+..||+++.+++...+...
T Consensus       499 ~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~-~l~-~vl~~ll~~l~~~-~~~V~~~A~~al~~l~~~~~~~l  575 (1049)
T 3m1i_C          499 DLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN-FLR-TVILKLFEFMHET-HEGVQDMACDTFIKIVQKCKYHF  575 (1049)
T ss_dssp             HHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHH-HHH-HHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHHHTHHH
T ss_pred             HHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHH-HHH-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHh
Confidence            55554322     2334555689999988753221111 111 4567788888887 89999999999999997432221


Q ss_pred             H--------HHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCC
Q 014945          362 Q--------AIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS  400 (415)
Q Consensus       362 ~--------~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~  400 (415)
                      .        ..++ .++..+..++..-+.+-......+++.++...+
T Consensus       576 ~~~~~~~~~p~~~-~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~  621 (1049)
T 3m1i_C          576 VIQQPRESEPFIQ-TIIRDIQKTTADLQPQQVHTFYKACGIIISEER  621 (1049)
T ss_dssp             HSCCTTCSSCHHH-HHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred             hcccCCCCCcHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence            1        1111 244455555655556566777788888865544

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=97.60  E-value=0.0018  Score=67.19  Aligned_cols=220  Identities=9%  Similarity=0.087  Sum_probs=133.0

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhc--cchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHH
Q 014945          167 SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN--EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALP  244 (415)
Q Consensus       167 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~--~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~  244 (415)
                      .+.+...++.++++++.++......     ....++.++..+.  ..+++.++..++|+++.++..-.. .......+++
T Consensus       459 ~~~~w~~~eaal~al~~i~~~~~~~-----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~-~~~~l~~vl~  532 (963)
T 2x19_B          459 EPYSWQHTEALLYGFQSIAETIDVN-----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLAD-HPVMINSVLP  532 (963)
T ss_dssp             CSCCHHHHHHHHHHHHHHTTSCCSS-----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHH-CHHHHTTTHH
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCch-----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHH
Confidence            5567888999999999999764321     1123444554442  224677999999999999865211 1245678889


Q ss_pred             HHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCC--CChhhHHHHHHHHHHhhcCCh-HHHHHH
Q 014945          245 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDD-MQTQCI  321 (415)
Q Consensus       245 ~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~v~~~a~~~l~nl~~~~~-~~~~~~  321 (415)
                      .++..|++  +.|+..|++++.+++..........+ ..+++.+..++..  -+...+..++.+++.++...+ +.....
T Consensus       533 ~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~-~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~  609 (963)
T 2x19_B          533 LVLHALGN--PELSVSSVSTLKKICRECKYDLPPYA-ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKN  609 (963)
T ss_dssp             HHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             HHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            99988854  88999999999999864432211111 1345555566654  246788889999999986543 333333


Q ss_pred             HHCCChHHHHHHh----cCCCccchHHH---HHHHHHHHhc--CC--H------------------HHHHHHHHcCCHHH
Q 014945          322 INHQALPCLLDLL----TQNYKKSIKKE---ACWTISNITA--GN--V------------------NQIQAIIEAGIIGP  372 (415)
Q Consensus       322 ~~~~~l~~L~~ll----~~~~~~~v~~~---a~~~l~nl~~--~~--~------------------~~~~~l~~~~~i~~  372 (415)
                      ++ .+++.+...+    +...++..+..   ...+|+.+..  +.  +                  +....+.+ .+++.
T Consensus       610 ~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  687 (963)
T 2x19_B          610 LH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQ-QVFQL  687 (963)
T ss_dssp             HH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHH-HHHHH
T ss_pred             HH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHH-HHHHH
Confidence            32 3444444433    22213444443   3333444432  10  0                  11222222 25666


Q ss_pred             HHHHhcc--CCHHHHHHHHHHHHHHhC
Q 014945          373 LVNLLLN--AEFEIKKEAAWAISNATS  397 (415)
Q Consensus       373 L~~~l~~--~~~~v~~~a~~aL~nl~~  397 (415)
                      +..++..  .++.+.+.++.++..++.
T Consensus       688 ~~~~l~~~~~~~~v~e~~~~~l~~~~~  714 (963)
T 2x19_B          688 IQKVLSKWLNDAQVVEAVCAIFEKSVK  714 (963)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCchHHHHHHHHHHHHHHH
Confidence            6666653  567899999999998764

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.59  E-value=0.00085  Score=58.72  Aligned_cols=186  Identities=13%  Similarity=0.114  Sum_probs=125.2

Q ss_pred             HHHHhccchhHhHHHHHHHHHHHhhhCCCCCc-----hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh-----
Q 014945          204 LLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL-----FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN-----  273 (415)
Q Consensus       204 L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~-----~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~-----  273 (415)
                      +-..| .+.+...+..++..+..+....+...     ........+.+...+.+.+..+...++.++..++....     
T Consensus        14 l~e~l-~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~   92 (278)
T 4ffb_C           14 LEERL-TYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLK   92 (278)
T ss_dssp             HHHHT-TCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CC
T ss_pred             HHHhc-ccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            45566 77888899999998888776542211     11234556677788889999999999999988765321     


Q ss_pred             HHHHHHHHcCcHHHHHH-hcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHH
Q 014945          274 DKIQAVIEAGVCPRLVE-LLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN  352 (415)
Q Consensus       274 ~~~~~~~~~~~i~~L~~-lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~n  352 (415)
                      .......-..+++.|+. .|.+....++..++.++..++...... .     .+++.+...+.+. ++.++.+++..|..
T Consensus        93 ~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~-----~~~e~l~~~l~~K-npkv~~~~l~~l~~  165 (278)
T 4ffb_C           93 NAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-T-----QSVELVIPFFEKK-LPKLIAAAANCVYE  165 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-H-----HHHHHHGGGGGCS-CHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-H-----HHHHHHHHHHhcc-CHHHHHHHHHHHHH
Confidence            11111122346677776 478888889999988887776533211 1     1245667778888 99999999988888


Q ss_pred             Hhc--CCHH-HHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945          353 ITA--GNVN-QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG  398 (415)
Q Consensus       353 l~~--~~~~-~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~  398 (415)
                      +..  |... .....+. .+++.+..++.+.++.||..|..++..+...
T Consensus       166 ~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~  213 (278)
T 4ffb_C          166 LMAAFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV  213 (278)
T ss_dssp             HHHHHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred             HHHHhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            764  2110 1122222 2566788889999999999999999888654

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.50  E-value=0.0016  Score=55.81  Aligned_cols=176  Identities=15%  Similarity=0.079  Sum_probs=113.9

Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhc---cchhHhHHHHHHHHHHHhh----hCCCCC
Q 014945          162 FVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFC----RGKPQP  234 (415)
Q Consensus       162 L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~---~~~~~~~~~~a~~~l~~l~----~~~~~~  234 (415)
                      +...|-+.+..-+..++..|.......+   +.+..  .+..++..+.   .+++..+...++.++..+.    ......
T Consensus        51 ~~~~lfs~d~k~~~~ale~L~~~l~~~~---~~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~  125 (266)
T 2of3_A           51 LMSQLFHKDFKQHLAALDSLVRLADTSP---RSLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPM  125 (266)
T ss_dssp             HHHHHTCSCHHHHHHHHHHHHHHHHHCH---HHHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhhhCh---HHHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccc
Confidence            3344444555555556655555443322   12221  2333333221   3557777777777766653    322222


Q ss_pred             chhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCC
Q 014945          235 LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD  314 (415)
Q Consensus       235 ~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~  314 (415)
                      .......++|.|+.-+.++.+.++..+-.++..+..-.+.       ..+++.+...+.+.++..+..++..++.+....
T Consensus       126 ~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~  198 (266)
T 2of3_A          126 SQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDALKSKNARQRSECLLVIEYYITNA  198 (266)
T ss_dssp             CHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence            2333467889999999888889998887777666531111       135678888899999999999999999997532


Q ss_pred             hHHHHHHHHCCCh---HHHHHHhcCCCccchHHHHHHHHHHHhc
Q 014945          315 DMQTQCIINHQAL---PCLLDLLTQNYKKSIKKEACWTISNITA  355 (415)
Q Consensus       315 ~~~~~~~~~~~~l---~~L~~ll~~~~~~~v~~~a~~~l~nl~~  355 (415)
                      ...     ....+   +.+..++.++ +..||..|..++..+-.
T Consensus       199 G~~-----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~  236 (266)
T 2of3_A          199 GIS-----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFK  236 (266)
T ss_dssp             CSG-----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred             CCC-----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence            211     23568   9999999999 99999999999987765

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=97.48  E-value=6.6e-05  Score=63.90  Aligned_cols=185  Identities=16%  Similarity=0.082  Sum_probs=128.5

Q ss_pred             hhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCC
Q 014945           79 GVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGA  158 (415)
Q Consensus        79 ~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~  158 (415)
                      ++.++++.++..++..+         +          ...|..++++++ +.++..++..|.                  
T Consensus        58 ll~d~~~~VR~~AA~~l---------~----------~~~l~~L~~D~~-~~VR~~aA~~L~------------------   99 (244)
T 1lrv_A           58 YLADPFWERRAIAVRYS---------P----------VEALTPLIRDSD-EVVRRAVAYRLP------------------   99 (244)
T ss_dssp             GTTCSSHHHHHHHHTTS---------C----------GGGGGGGTTCSS-HHHHHHHHTTSC------------------
T ss_pred             HhcCCCHHHHHHHHHhC---------C----------HHHHHHHccCcC-HHHHHHHHHHCC------------------
Confidence            45678888888877632         0          233677788888 999999886421                  


Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhh
Q 014945          159 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ  238 (415)
Q Consensus       159 i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~  238 (415)
                      .+.|..++.+++..|+..++..+   .   +            ..+..++ ++++..++..++..   +.          
T Consensus       100 ~~~L~~ll~D~d~~VR~~aA~~l---~---~------------~~L~~L~-~D~d~~VR~~aA~~---l~----------  147 (244)
T 1lrv_A          100 REQLSALMFDEDREVRITVADRL---P---L------------EQLEQMA-ADRDYLVRAYVVQR---IP----------  147 (244)
T ss_dssp             SGGGGGTTTCSCHHHHHHHHHHS---C---T------------GGGGGGT-TCSSHHHHHHHHHH---SC----------
T ss_pred             HHHHHHHHcCCCHHHHHHHHHhC---C---H------------HHHHHHH-cCCCHHHHHHHHHh---cC----------
Confidence            14577788899999998888743   1   1            1233334 77888888888763   11          


Q ss_pred             hhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHH
Q 014945          239 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT  318 (415)
Q Consensus       239 ~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~  318 (415)
                          .+.+..+++++++.|+..++..+   .               .+.+..++.++++.|+..+...+           
T Consensus       148 ----~~~l~~l~~D~d~~VR~~aa~~l---~---------------~~ll~~ll~D~d~~VR~aaa~~l-----------  194 (244)
T 1lrv_A          148 ----PGRLFRFMRDEDRQVRKLVAKRL---P---------------EESLGLMTQDPEPEVRRIVASRL-----------  194 (244)
T ss_dssp             ----GGGGGGTTTCSCHHHHHHHHHHS---C---------------GGGGGGSTTCSSHHHHHHHHHHC-----------
T ss_pred             ----HHHHHHHHcCCCHHHHHHHHHcC---C---------------HHHHHHHHcCCCHHHHHHHHHhC-----------
Confidence                12345677888999999987751   1               13455677899999999888653           


Q ss_pred             HHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHH
Q 014945          319 QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAIS  393 (415)
Q Consensus       319 ~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~  393 (415)
                             ..+.|..++.++ ++.||..++..++                  .+.|..+ .++++.|+..|...|+
T Consensus       195 -------~~~~L~~Ll~D~-d~~VR~~aa~~l~------------------~~~L~~L-~D~~~~VR~aa~~~L~  242 (244)
T 1lrv_A          195 -------RGDDLLELLHDP-DWTVRLAAVEHAS------------------LEALREL-DEPDPEVRLAIAGRLG  242 (244)
T ss_dssp             -------CGGGGGGGGGCS-SHHHHHHHHHHSC------------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred             -------CHHHHHHHHcCC-CHHHHHHHHHcCC------------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence                   124677888888 9999999998863                  2345445 8899999999876653

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=97.46  E-value=0.012  Score=51.58  Aligned_cols=241  Identities=13%  Similarity=0.139  Sum_probs=158.6

Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCch----hHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhh
Q 014945          153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK----CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  228 (415)
Q Consensus       153 ~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~----~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~  228 (415)
                      +...+.+..|+..|..-+-+.+..+..++.++......    ..+.+..  -.+.+..++..-.++++.-.+-..|....
T Consensus        74 i~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLReci  151 (341)
T 1upk_A           74 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRECI  151 (341)
T ss_dssp             HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHHHH
Confidence            34457788888888887888888999989988765432    2233332  23333333422335556566666666666


Q ss_pred             hCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHc---CcHHHHHHhcCCCChhhHHHHHH
Q 014945          229 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLRHPSPSVLIPALR  305 (415)
Q Consensus       229 ~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~i~~L~~lL~~~~~~v~~~a~~  305 (415)
                      ++..-.......+.+-.+.+.++.++-+|..+|..++..+..........++..   .++.....+|.+++--++..++.
T Consensus       152 r~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlK  231 (341)
T 1upk_A          152 RHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK  231 (341)
T ss_dssp             TSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred             HhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHH
Confidence            553333333334566677788889999999999999998876655444455554   35777888899999999999999


Q ss_pred             HHHHhhcCCh--HH-HHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcC---CHHHHHHHHH--cCCHHHHHHHh
Q 014945          306 TVGNIVTGDD--MQ-TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG---NVNQIQAIIE--AGIIGPLVNLL  377 (415)
Q Consensus       306 ~l~nl~~~~~--~~-~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~---~~~~~~~l~~--~~~i~~L~~~l  377 (415)
                      .||.+.....  .. ...+-+..-+..++.+|.+. +..++-+|..++--++++   +++...-++.  ..++..|-++.
T Consensus       232 LLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~  310 (341)
T 1upk_A          232 LLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQ  310 (341)
T ss_dssp             HHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTT
T ss_pred             HHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHhCC
Confidence            9999997533  22 22222335688999999999 999999999999988873   4554444443  23444444444


Q ss_pred             ccC--CHHHHHHHHHHHHHHh
Q 014945          378 LNA--EFEIKKEAAWAISNAT  396 (415)
Q Consensus       378 ~~~--~~~v~~~a~~aL~nl~  396 (415)
                      .+.  |.....+=...+..+.
T Consensus       311 ~d~~eDeqF~dEK~~lI~~I~  331 (341)
T 1upk_A          311 NDRTEDEQFNDEKTYLVKQIR  331 (341)
T ss_dssp             TTC-CCSHHHHHHHHHHHHHH
T ss_pred             CCCcchhhHHHHHHHHHHHHH
Confidence            433  4555555445554444

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.32  E-value=0.0056  Score=52.39  Aligned_cols=178  Identities=10%  Similarity=0.060  Sum_probs=121.5

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhc--CchHHHHHhhcCCCChHHHHHHHHHHHHHhC----CCc
Q 014945           74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQS--GVVPRFIEFLSRDDFPQLQFEAAWALTNIAS----GTS  147 (415)
Q Consensus        74 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~--g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~----~~~  147 (415)
                      +.+...|.+.|...+..|+..|...++..    .+.++..  .+++++.--+.+++ ..+...++..|..+..    ...
T Consensus        49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~----~~~~~~~lDll~kw~~lr~~d~N-~~v~~~~L~~L~~l~~~l~~~~y  123 (266)
T 2of3_A           49 VSLMSQLFHKDFKQHLAALDSLVRLADTS----PRSLLSNSDLLLKWCTLRFFETN-PAALIKVLELCKVIVELIRDTET  123 (266)
T ss_dssp             HHHHHHHTCSCHHHHHHHHHHHHHHHHHC----HHHHHHTHHHHHHHHHHHTTSCC-HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhhhC----hHHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHHHhccc
Confidence            56777888899999999999999877542    1222211  12444432333556 8888888888877642    111


Q ss_pred             hhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHh
Q 014945          148 ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF  227 (415)
Q Consensus       148 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l  227 (415)
                      .....-. .-++|.|+.-+.++.+.+++.+-.++..++.-.+.       ..+.+.++.-+ .+.+...+..++..+..+
T Consensus       124 ~~~~~ea-~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~-ksKN~R~R~e~l~~l~~l  194 (266)
T 2of3_A          124 PMSQEEV-SAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDAL-KSKNARQRSECLLVIEYY  194 (266)
T ss_dssp             CCCHHHH-HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGG-GCSCHHHHHHHHHHHHHH
T ss_pred             cchHHHH-HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHH-ccCCHHHHHHHHHHHHHH
Confidence            1222111 13689999999888899999888888777532221       12456677777 777888899998888888


Q ss_pred             hhCCCCCchhhhhchH---HHHHHhhcCCChhHHHHHHHHHHHhc
Q 014945          228 CRGKPQPLFEQTRPAL---PALERLIHSNDDEVLTDACWALSYLS  269 (415)
Q Consensus       228 ~~~~~~~~~~~~~~~l---~~l~~lL~~~d~~v~~~a~~~l~~l~  269 (415)
                      .......    ....+   |.+..++.+.|..|+..|+.++..+-
T Consensus       195 i~~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y  235 (266)
T 2of3_A          195 ITNAGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF  235 (266)
T ss_dssp             HHHHCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred             HHhcCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            7654222    13467   99999999999999999999998654

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=97.22  E-value=0.059  Score=47.25  Aligned_cols=202  Identities=12%  Similarity=0.111  Sum_probs=147.4

Q ss_pred             HHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhh------hchHHHHHHhhcCCChhHHHHHHHHHH
Q 014945          193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT------RPALPALERLIHSNDDEVLTDACWALS  266 (415)
Q Consensus       193 ~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~------~~~l~~l~~lL~~~d~~v~~~a~~~l~  266 (415)
                      ..+...+.+..|+..| ..-+.+.++.++.++.++.+.........+      ..++..|+..-.+  +++.-.+-..|.
T Consensus        72 ~ei~~~dll~~Li~~l-~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~--~diAl~~G~mLR  148 (341)
T 1upk_A           72 QELYNSGLLSTLVADL-QLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYES--PEIALNCGIMLR  148 (341)
T ss_dssp             HHHHHHSHHHHHHHTG-GGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGS--TTTHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHhc-ccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhcc--chhHhHHHHHHH
Confidence            3455667788888888 777888999999999999988744333222      2344444444433  333333333344


Q ss_pred             HhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHC---CChHHHHHHhcCCCccchH
Q 014945          267 YLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH---QALPCLLDLLTQNYKKSIK  343 (415)
Q Consensus       267 ~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~---~~l~~L~~ll~~~~~~~v~  343 (415)
                      .+.. .+.....++..+.+-.+......++-++...|..++..+.+.........+..   .++.....++.++ +.-+|
T Consensus       149 ecir-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~-NYVTk  226 (341)
T 1upk_A          149 ECIR-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-NYVTK  226 (341)
T ss_dssp             HHHT-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-SHHHH
T ss_pred             HHHH-hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCC-cchhH
Confidence            4443 44455667788888889999999999999999999999988777665556544   3567778899998 99999


Q ss_pred             HHHHHHHHHHhcC--CHHHHHHHHH-cCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Q 014945          344 KEACWTISNITAG--NVNQIQAIIE-AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG  399 (415)
Q Consensus       344 ~~a~~~l~nl~~~--~~~~~~~l~~-~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~  399 (415)
                      ..+...|+.+...  +.......+. ..-+..++.+|.+....++.+|-..+.-++...
T Consensus       227 RQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP  285 (341)
T 1upk_A          227 RQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP  285 (341)
T ss_dssp             HHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence            9999999999864  5555555553 345889999999999999999999988887543

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=96.93  E-value=0.026  Score=46.93  Aligned_cols=145  Identities=17%  Similarity=0.079  Sum_probs=106.5

Q ss_pred             chHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhcC-CCchhH
Q 014945          115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAG-DSPKCR  192 (415)
Q Consensus       115 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-ll~~~~~~v~~~a~~~L~nl~~-~~~~~~  192 (415)
                      .++....+.+++. .++|..|+..|+.+ .. .        ..+++.+.. +..+++-.|++.+..+++.++. ..++. 
T Consensus        72 ~~~la~~L~~~~~-deVR~~Av~lLg~~-~~-~--------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~-  139 (240)
T 3l9t_A           72 IKKLAFLAYQSDV-YQVRMYAVFLFGYL-SK-D--------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK-  139 (240)
T ss_dssp             HHHHHHHHHTCSS-HHHHHHHHHHHHHT-TT-S--------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT-
T ss_pred             HHHHHHHHHhCcc-hHHHHHHHHHHHhc-cC-c--------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH-
Confidence            3566677777777 89999999998887 31 1        124666666 5556788999999999999874 33321 


Q ss_pred             HHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 014945          193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT  272 (415)
Q Consensus       193 ~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~  272 (415)
                             .++.+.... .+++..+++.|+..+.--+.. + ........++|.|..+..+++.-|+....|.|..++..+
T Consensus       140 -------~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~  209 (240)
T 3l9t_A          140 -------ALPIIDEWL-KSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKF  209 (240)
T ss_dssp             -------THHHHHHHH-HCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred             -------HHHHHHHHh-cCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhC
Confidence                   456666666 888999999999887654433 2 112233557888888888889999999999999999999


Q ss_pred             hHHHHHHHH
Q 014945          273 NDKIQAVIE  281 (415)
Q Consensus       273 ~~~~~~~~~  281 (415)
                      ++....+++
T Consensus       210 Pd~V~~~~~  218 (240)
T 3l9t_A          210 PDLVKIELK  218 (240)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            887665554

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=96.87  E-value=0.013  Score=60.65  Aligned_cols=254  Identities=15%  Similarity=0.088  Sum_probs=137.4

Q ss_pred             hHHHHHHHHHHHHHhCCCchhhHHH-HhCC----ChHHHHHhhC-----CCCHHHHHHHHHHHHHhcCCCchhHHHHHhc
Q 014945          129 PQLQFEAAWALTNIASGTSENTRVV-IDHG----AVPIFVRLLS-----SPTDDVREQAVWALGNVAGDSPKCRDLVLSN  198 (415)
Q Consensus       129 ~~i~~~a~~~L~~l~~~~~~~~~~~-~~~g----~i~~L~~ll~-----~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~  198 (415)
                      ....+.++.+|+.++.+-......+ -...    .++.+..++.     .+++.++..++|+++..+..-..      ..
T Consensus       457 W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~------~~  530 (980)
T 3ibv_A          457 WQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY------ES  530 (980)
T ss_dssp             HHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT------CC
T ss_pred             HHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc------Cc
Confidence            5678889999999988644322111 0011    3444555544     57899999999999998754321      12


Q ss_pred             CChHHHHHHhcc-----chhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcC-----CCh-------------
Q 014945          199 GALMPLLAQFNE-----HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS-----NDD-------------  255 (415)
Q Consensus       199 g~i~~L~~~l~~-----~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~-----~d~-------------  255 (415)
                      ..+++++..+..     +++..++..|+.++.++|+.-...-......++..+..+|..     .+.             
T Consensus       531 ~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~  610 (980)
T 3ibv_A          531 AAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRN  610 (980)
T ss_dssp             TTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHT
T ss_pred             hhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhccc
Confidence            356666666533     456789999999999999875332223334455555555542     111             


Q ss_pred             ---hHHHHHHHHHHHhc---cCChHHHHHHHHcCcHHH----HHHhcCCC----Chhh-HHHHHHHHHHhhcCChHH---
Q 014945          256 ---EVLTDACWALSYLS---DGTNDKIQAVIEAGVCPR----LVELLRHP----SPSV-LIPALRTVGNIVTGDDMQ---  317 (415)
Q Consensus       256 ---~v~~~a~~~l~~l~---~~~~~~~~~~~~~~~i~~----L~~lL~~~----~~~v-~~~a~~~l~nl~~~~~~~---  317 (415)
                         +-+.....+++.+.   ..+.+.....++ .+++.    +-..+...    +... ....+.++|+++.+-+..   
T Consensus       611 ~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~-~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~  689 (980)
T 3ibv_A          611 SDFNSQLYLFETVGVLISSGNLTPEEQALYCD-SLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSE  689 (980)
T ss_dssp             TTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH-HHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-C
T ss_pred             CCchHHHHHHHHHHHHHhCCCCCHHHHHHHHH-HHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCC
Confidence               12333445555554   223333222222 23333    33333221    1111 224567788888664321   


Q ss_pred             ---HHHHHHCCChHHHHHHhc--CCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccC-CHHHHHHHHHH
Q 014945          318 ---TQCIINHQALPCLLDLLT--QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWA  391 (415)
Q Consensus       318 ---~~~~~~~~~l~~L~~ll~--~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~-~~~v~~~a~~a  391 (415)
                         ....+. .+.+.+...+.  .. +..||..++.++..+...-...+..     .+|.++..+-.. +..-....+|.
T Consensus       690 ~~p~~~~f~-~~~~~il~~l~~~~~-~~~irea~~~~~~r~i~~lg~~~~p-----~lp~~i~~ll~~~~~~e~~~fL~l  762 (980)
T 3ibv_A          690 EVAWLASFN-KASDEIFLILDRMGF-NEDIRGAVRFTSGRIINVVGPDMLP-----KVPQLISILLNSIDMNELVDVLSF  762 (980)
T ss_dssp             CCSHHHHHH-HHHHHHHHHHHHSCC-SHHHHHHHHHHHHHHTTTTHHHHTT-----THHHHHHHHHHHCCTTTHHHHHHH
T ss_pred             CCcHHHHHH-HHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHccHhHHH-----HHHHHHHHHHhcCCHHHHHHHHHH
Confidence               111111 34455555554  33 6789999999999999754443322     455555544321 22223344555


Q ss_pred             HHHHh
Q 014945          392 ISNAT  396 (415)
Q Consensus       392 L~nl~  396 (415)
                      ++.+.
T Consensus       763 ~~qli  767 (980)
T 3ibv_A          763 ISQLI  767 (980)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55554

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=96.79  E-value=0.19  Score=52.16  Aligned_cols=222  Identities=13%  Similarity=0.077  Sum_probs=138.1

Q ss_pred             hccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCC---
Q 014945           70 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT---  146 (415)
Q Consensus        70 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~---  146 (415)
                      +..+..++..+.+++++.+..|-..|..+-.   .+        +....+..+|..+.++.+|..|+.+|.+.....   
T Consensus        27 v~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~---sp--------~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~   95 (1073)
T 3gjx_A           27 INLLDNVVNCLYHGEGAQQRMAQEVLTHLKE---HP--------DAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKI   95 (1073)
T ss_dssp             HHHHHHHHHTTTCSSHHHHHHHHHHHHTSSC---CS--------CHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGG
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHc---Cc--------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhh
Confidence            3567888988888888878888777876532   12        234455556655545899999999998876521   


Q ss_pred             -chhhHHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhcCCC-chhHHHHHhcCChHHHHHHhccchhHhHHHH
Q 014945          147 -SENTRVVIDHGAVPIFVRLLSS-----PTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRN  219 (415)
Q Consensus       147 -~~~~~~~~~~g~i~~L~~ll~~-----~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~  219 (415)
                       +......++..++..+.+...+     .++.++.+.+.+++.++... |.     ...+.++.++..+.  .++.....
T Consensus        96 L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~-----~Wp~fi~dLv~~~~--~~~~~~~~  168 (1073)
T 3gjx_A           96 LPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK-----HWPTFISDIVGASR--TSESLCQN  168 (1073)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT-----TCTTHHHHHHHHHH--HCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh-----hccHHHHHHHHHhC--CCHHHHHH
Confidence             2222333334455656555433     24667788888888887321 11     12345666777662  23445666


Q ss_pred             HHHHHHHhhhCCCCC------c------hhhhh----chHHHHHHhhc-CCChhHHHHHHHHHHHhccCChHHHHHHHHc
Q 014945          220 ATWTLSNFCRGKPQP------L------FEQTR----PALPALERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEA  282 (415)
Q Consensus       220 a~~~l~~l~~~~~~~------~------~~~~~----~~l~~l~~lL~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~  282 (415)
                      .+.+|..|++.-...      .      ...+.    .+++.+...|. ..++.+...++.++..+...-+  +..+++.
T Consensus       169 ~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~--i~~i~~~  246 (1073)
T 3gjx_A          169 NMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP--LGYIFET  246 (1073)
T ss_dssp             HHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSS
T ss_pred             HHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC--HHHhccc
Confidence            777777777652110      0      01112    23333334443 3577888888999998887754  3457788


Q ss_pred             CcHHHH-HHhcCCCChhhHHHHHHHHHHhhcC
Q 014945          283 GVCPRL-VELLRHPSPSVLIPALRTVGNIVTG  313 (415)
Q Consensus       283 ~~i~~L-~~lL~~~~~~v~~~a~~~l~nl~~~  313 (415)
                      ++++.+ ..+|  +++.++..|+.||..++..
T Consensus       247 ~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k  276 (1073)
T 3gjx_A          247 KLISTLIYKFL--NVPMFRNVSLKCLTEIAGV  276 (1073)
T ss_dssp             SHHHHHHHHTS--SSHHHHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHHhc--CChHHHHHHHHHHHHHHhc
Confidence            899988 4666  4667999999999999874

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=96.68  E-value=0.0008  Score=57.22  Aligned_cols=165  Identities=16%  Similarity=0.177  Sum_probs=114.9

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHH
Q 014945           75 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI  154 (415)
Q Consensus        75 ~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~  154 (415)
                      .+..+++++++.++..++..+    .               .+.|..++++++ +.++..++..+   .           
T Consensus        78 ~l~~L~~D~~~~VR~~aA~~L----~---------------~~~L~~ll~D~d-~~VR~~aA~~l---~-----------  123 (244)
T 1lrv_A           78 ALTPLIRDSDEVVRRAVAYRL----P---------------REQLSALMFDED-REVRITVADRL---P-----------  123 (244)
T ss_dssp             GGGGGTTCSSHHHHHHHHTTS----C---------------SGGGGGTTTCSC-HHHHHHHHHHS---C-----------
T ss_pred             HHHHHccCcCHHHHHHHHHHC----C---------------HHHHHHHHcCCC-HHHHHHHHHhC---C-----------
Confidence            456667788999999888531    1               134677888888 99999988843   1           


Q ss_pred             hCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCC
Q 014945          155 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP  234 (415)
Q Consensus       155 ~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~  234 (415)
                          .+.+..++.+++..|+..++..   +.   +            + ++..+.++++..++..++..+   .      
T Consensus       124 ----~~~L~~L~~D~d~~VR~~aA~~---l~---~------------~-~l~~l~~D~d~~VR~~aa~~l---~------  171 (244)
T 1lrv_A          124 ----LEQLEQMAADRDYLVRAYVVQR---IP---P------------G-RLFRFMRDEDRQVRKLVAKRL---P------  171 (244)
T ss_dssp             ----TGGGGGGTTCSSHHHHHHHHHH---SC---G------------G-GGGGTTTCSCHHHHHHHHHHS---C------
T ss_pred             ----HHHHHHHHcCCCHHHHHHHHHh---cC---H------------H-HHHHHHcCCCHHHHHHHHHcC---C------
Confidence                1235567888999999988873   21   1            1 222333788899998888751   1      


Q ss_pred             chhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCC
Q 014945          235 LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD  314 (415)
Q Consensus       235 ~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~  314 (415)
                              -+.+..+++++++.|+..++..+                  ..+.|..++.++++.|+..+...++      
T Consensus       172 --------~~ll~~ll~D~d~~VR~aaa~~l------------------~~~~L~~Ll~D~d~~VR~~aa~~l~------  219 (244)
T 1lrv_A          172 --------EESLGLMTQDPEPEVRRIVASRL------------------RGDDLLELLHDPDWTVRLAAVEHAS------  219 (244)
T ss_dssp             --------GGGGGGSTTCSSHHHHHHHHHHC------------------CGGGGGGGGGCSSHHHHHHHHHHSC------
T ss_pred             --------HHHHHHHHcCCCHHHHHHHHHhC------------------CHHHHHHHHcCCCHHHHHHHHHcCC------
Confidence                    13455678899999999988652                  1256788889999999999988764      


Q ss_pred             hHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHH
Q 014945          315 DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS  351 (415)
Q Consensus       315 ~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~  351 (415)
                                  .+.|..+ .++ ++.||..+...|+
T Consensus       220 ------------~~~L~~L-~D~-~~~VR~aa~~~L~  242 (244)
T 1lrv_A          220 ------------LEALREL-DEP-DPEVRLAIAGRLG  242 (244)
T ss_dssp             ------------HHHHHHC-CCC-CHHHHHHHHCCC-
T ss_pred             ------------HHHHHHc-cCC-CHHHHHHHHHHhC
Confidence                        2345555 777 8999998876543

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=96.62  E-value=0.054  Score=45.37  Aligned_cols=151  Identities=13%  Similarity=0.141  Sum_probs=104.9

Q ss_pred             ChhHHHHHHHHHHHhccCChHHHHHHHHc-CcHHHHHHh-------cCCCC--h--h-hHHHHHHHHHHhhcCChHHHHH
Q 014945          254 DDEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVEL-------LRHPS--P--S-VLIPALRTVGNIVTGDDMQTQC  320 (415)
Q Consensus       254 d~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~L~~l-------L~~~~--~--~-v~~~a~~~l~nl~~~~~~~~~~  320 (415)
                      +++-++.|+.-|+.=-+..++..-.+..+ |.+..|++-       ++.+.  .  . -...|+..+..++.+ ++.+..
T Consensus        14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAsh-petr~~   92 (268)
T 2fv2_A           14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASH-PETRSA   92 (268)
T ss_dssp             STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHC-TTTHHH
T ss_pred             CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcC-cchhhH
Confidence            44457777666665444434433333333 655555433       22222  1  1 223455566667764 557778


Q ss_pred             HHHCCChHHHHHHhcCCC----ccchHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHH
Q 014945          321 IINHQALPCLLDLLTQNY----KKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA  395 (415)
Q Consensus       321 ~~~~~~l~~L~~ll~~~~----~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl  395 (415)
                      ++++++.-.|..+|+...    ...+|-.+..+++.+.. ++++.+..+++.+++|..++.|+.++.-.+..|...+..+
T Consensus        93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI  172 (268)
T 2fv2_A           93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI  172 (268)
T ss_dssp             HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            999999889999997652    24688899999999997 7899999999999999999999999999999999999998


Q ss_pred             hCCCCHHHHHHH
Q 014945          396 TSGGSNEQIKYK  407 (415)
Q Consensus       396 ~~~~~~~~~~~l  407 (415)
                      ..+  ..-+.|+
T Consensus       173 L~d--d~GL~Yi  182 (268)
T 2fv2_A          173 LLD--DTGLAYI  182 (268)
T ss_dssp             HHS--HHHHHHH
T ss_pred             hcc--chhHHHH
Confidence            854  4444554

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=96.55  E-value=0.056  Score=44.91  Aligned_cols=140  Identities=14%  Similarity=0.093  Sum_probs=101.3

Q ss_pred             hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHH-hcCCCChhhHHHHHHHHHHhhc-CChHH
Q 014945          240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE-LLRHPSPSVLIPALRTVGNIVT-GDDMQ  317 (415)
Q Consensus       240 ~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~-lL~~~~~~v~~~a~~~l~nl~~-~~~~~  317 (415)
                      ...++....+.+++..+++..|+.+|+.+ ....         .+++.+.. +-.++++.|+..+..+++.++. ..++ 
T Consensus        70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe-  138 (240)
T 3l9t_A           70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK-  138 (240)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT-
T ss_pred             HHHHHHHHHHHhCcchHHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-
Confidence            34555666667778789999999999887 3111         14566666 5567889999999999999885 3332 


Q ss_pred             HHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc-----CCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHH
Q 014945          318 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-----GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAI  392 (415)
Q Consensus       318 ~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-----~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL  392 (415)
                             ..++.+.....++ +..||+.|...+.-.+.     .+++.        +++.|-.+..+++.-||+...|+|
T Consensus       139 -------~~l~~~~~W~~d~-n~~VRR~Ase~~rpW~~~~~~k~dp~~--------ll~iL~~L~~D~s~yVrKSVan~L  202 (240)
T 3l9t_A          139 -------KALPIIDEWLKSS-NLHTRRAATEGLRIWTNRPYFKENPNE--------AIRRIADLKEDVSEYVRKSVGNAL  202 (240)
T ss_dssp             -------TTHHHHHHHHHCS-SHHHHHHHHHHTCSGGGSTTTTTCHHH--------HHHHHHTTTTCSCHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHhcCC-CHHHHHHHHHhhHHHhccchhhcCHHH--------HHHHHHHhcCChHHHHHHHHHHHH
Confidence                   2567888999999 99999998877643222     23332        456666677788899999999999


Q ss_pred             HHHhCCCCHHHHHHH
Q 014945          393 SNATSGGSNEQIKYK  407 (415)
Q Consensus       393 ~nl~~~~~~~~~~~l  407 (415)
                      ..++.. .++.+..+
T Consensus       203 rD~SK~-~Pd~V~~~  216 (240)
T 3l9t_A          203 RDISKK-FPDLVKIE  216 (240)
T ss_dssp             HHHHTT-CHHHHHHH
T ss_pred             HHHhhh-CHHHHHHH
Confidence            999987 56666555

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=96.53  E-value=0.8  Score=48.59  Aligned_cols=300  Identities=9%  Similarity=0.039  Sum_probs=171.0

Q ss_pred             cHHHHHHhhcCC--CHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhc-CCCChHHHHHHHHHHHHHhCC---
Q 014945           72 SLPAMVAGVWSD--DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS-RDDFPQLQFEAAWALTNIASG---  145 (415)
Q Consensus        72 ~i~~l~~~l~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~i~~~a~~~L~~l~~~---  145 (415)
                      .+..+++.+.+.  ++..+..|-..|..+-..   +        +....+...|. .+.++.+|..|+..|.+....   
T Consensus        12 ~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~---p--------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~   80 (1204)
T 3a6p_A           12 QLVKAVTVMMDPNSTQRYRLEALKFCEEFKEK---C--------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWN   80 (1204)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH---C--------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGG
T ss_pred             HHHHHHHHHhCCCCChHHHHHHHHHHHHHHhC---c--------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcc
Confidence            355555555544  677788888888776322   1        12333443332 333389999999999987642   


Q ss_pred             --CchhhHHHHhCCChHHHHHhhCC---CCHHHHHHHHHHHHHhcCCC-chhHHHHHhcCChHHHHHHhccchhHhHHHH
Q 014945          146 --TSENTRVVIDHGAVPIFVRLLSS---PTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRN  219 (415)
Q Consensus       146 --~~~~~~~~~~~g~i~~L~~ll~~---~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~  219 (415)
                        +++.+ ..++..++..+...-..   ....++.+.+.++..|+... |.     -..+.++.++..+..  +......
T Consensus        81 ~l~~e~k-~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~-----~Wp~ll~~L~~~~~~--~~~~~e~  152 (1204)
T 3a6p_A           81 GMSRLEK-VYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ-----HWPDMLIELDTLSKQ--GETQTEL  152 (1204)
T ss_dssp             GSCHHHH-HHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT-----TCTTHHHHHHHHHHT--CHHHHHH
T ss_pred             cCCHHHH-HHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc-----cchHHHHHHHHHhcC--CHHHHHH
Confidence              22333 33333445555443221   45788999999999887432 11     123467778887733  3345677


Q ss_pred             HHHHHHHhhhCC-C--CCchh-------hh----hchHHHHHHhhcC-------------------CChhHHHHHHHHHH
Q 014945          220 ATWTLSNFCRGK-P--QPLFE-------QT----RPALPALERLIHS-------------------NDDEVLTDACWALS  266 (415)
Q Consensus       220 a~~~l~~l~~~~-~--~~~~~-------~~----~~~l~~l~~lL~~-------------------~d~~v~~~a~~~l~  266 (415)
                      ++.+|..+++.. .  .....       .+    ..+++.+..++..                   .+..+...++.++.
T Consensus       153 ~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~  232 (1204)
T 3a6p_A          153 VMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLA  232 (1204)
T ss_dssp             HHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHH
Confidence            788888877542 1  11000       01    1333444444432                   12446777888887


Q ss_pred             HhccCChHHHHHHHHcC--cHHHHHHhcCCCChhhHHHHHHHHHHhhcCC--hHHHHHHHHC---CChHHHHHHhc----
Q 014945          267 YLSDGTNDKIQAVIEAG--VCPRLVELLRHPSPSVLIPALRTVGNIVTGD--DMQTQCIINH---QALPCLLDLLT----  335 (415)
Q Consensus       267 ~l~~~~~~~~~~~~~~~--~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~--~~~~~~~~~~---~~l~~L~~ll~----  335 (415)
                      +....-+-  ..+.+..  +++.+..++.  ++.++..|+.+|..++...  +.....++..   ..+..++....    
T Consensus       233 ~~l~Wi~~--~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~  308 (1204)
T 3a6p_A          233 GYIDWVSM--SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADG  308 (1204)
T ss_dssp             TTTTTSCH--HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCC
T ss_pred             HHHhccCH--HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCC
Confidence            76655432  2233433  6777777765  4678999999999999754  2222222221   11234444432    


Q ss_pred             ---CCCccchHHHHHHHHHHHhcCCHHHHHHHHH-----------cCCHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945          336 ---QNYKKSIKKEACWTISNITAGNVNQIQAIIE-----------AGIIGPLVNLLLNAEFEIKKEAAWAISNATSG  398 (415)
Q Consensus       336 ---~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~-----------~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~  398 (415)
                         +..+..+.+..+..+..+..    ....++.           .++++.++.++.+++..+-..++.....+...
T Consensus       309 ~~~~e~d~e~~k~l~~ll~~lg~----~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~  381 (1204)
T 3a6p_A          309 GGLVEKHYVFLKRLCQVLCALGN----QLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH  381 (1204)
T ss_dssp             CSCCHHHHHHHHHHHHHHHHHHH----HHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred             CCCccHHHHHHHHHHHHHHHHHH----HHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence               11145667777777777662    1222222           13578888888888888888888777766654

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=96.48  E-value=0.077  Score=44.46  Aligned_cols=137  Identities=16%  Similarity=0.203  Sum_probs=100.6

Q ss_pred             HHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCC-----hhhHHHHHHHHHHhhcCC-hHHHHHHHHCCChHHHHH
Q 014945          259 TDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS-----PSVLIPALRTVGNIVTGD-DMQTQCIINHQALPCLLD  332 (415)
Q Consensus       259 ~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~-----~~v~~~a~~~l~nl~~~~-~~~~~~~~~~~~l~~L~~  332 (415)
                      .+|+..+..++.+++.+ ..++++++.-.|..+|+..+     +.+|-.+++++|.++..+ ++....+++.+++|..++
T Consensus        74 cnaLaLlQcvAshpetr-~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLr  152 (268)
T 2fv2_A           74 CNALALLQCVASHPETR-SAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLR  152 (268)
T ss_dssp             HHHHHHHHHHHHCTTTH-HHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHcCcchh-hHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHH
Confidence            55666667777776655 56889999888999986543     478899999999998654 467788889999999999


Q ss_pred             HhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHH--------cCCHHHHHHH-hccCCHHHHHHHHHHHHHHhCC
Q 014945          333 LLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE--------AGIIGPLVNL-LLNAEFEIKKEAAWAISNATSG  398 (415)
Q Consensus       333 ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~--------~~~i~~L~~~-l~~~~~~v~~~a~~aL~nl~~~  398 (415)
                      .++.+ +.--|.-|.+++..|..+ .....+++.        ..++..++.- .+.+++++.+....+-..++.+
T Consensus       153 ime~G-selSKtvAtfIlqKIL~d-d~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn  225 (268)
T 2fv2_A          153 IMESG-SELSKTVATFILQKILLD-DTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN  225 (268)
T ss_dssp             HHHHS-CHHHHHHHHHHHHHHHHS-HHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS
T ss_pred             HHhhc-cHHHHHHHHHHHHHHhcc-chhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence            99999 888888899998877653 222333321        1133333333 3457888989998888888865

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=96.46  E-value=0.21  Score=46.01  Aligned_cols=124  Identities=17%  Similarity=0.131  Sum_probs=95.1

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHH
Q 014945          168 SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALE  247 (415)
Q Consensus       168 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~  247 (415)
                      .++......|...|..+..+-|...+.     ++..+++++ .+.+..++..|+..|..+|.+      ..+..+...|+
T Consensus        39 kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLc-EDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~  106 (507)
T 3u0r_A           39 KGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLC-EDEDVSIRRQAIKELPQFATG------ENLPRVADILT  106 (507)
T ss_dssp             GSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHH-TCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHH
Confidence            357889999999999999988887665     577899999 888999999999999999976      33678889999


Q ss_pred             HhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhh
Q 014945          248 RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV  311 (415)
Q Consensus       248 ~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~  311 (415)
                      ++|+.+++.-...+-++|..+...++..        .+..+...+...++.+|+.++..|..-.
T Consensus       107 QlLqtdd~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~~e~~Rer~lkFi~~kl  162 (507)
T 3u0r_A          107 QLLQTDDSAEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQGEDIVRERAIKFLSTKL  162 (507)
T ss_dssp             HHTTCCCHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHSCHHHHHHHHHHHHHHG
T ss_pred             HHHhccchHHHHHHHHHHHHHHhcChHH--------HHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence            9999998877777777777766544422        2344444444457888988888876444

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=96.39  E-value=0.54  Score=43.34  Aligned_cols=245  Identities=12%  Similarity=0.040  Sum_probs=146.5

Q ss_pred             hHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHh
Q 014945          129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF  208 (415)
Q Consensus       129 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l  208 (415)
                      +..+..|+..+......-|+..+.     ++..++.+..+++..||.+|+..|..+|.+ . ....     +...|+++|
T Consensus        42 ~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~-~i~k-----iaDvL~QlL  109 (507)
T 3u0r_A           42 TKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-E-NLPR-----VADILTQLL  109 (507)
T ss_dssp             HHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-T-CHHH-----HHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-h-hhhh-----HHHHHHHHH
Confidence            799999999999998877777655     577899999999999999999999999988 2 2222     456788888


Q ss_pred             ccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC-ChHHHHHHHHcCcHHH
Q 014945          209 NEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPR  287 (415)
Q Consensus       209 ~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~~  287 (415)
                       +..+..-...+-++|..+...++       .+.+..+...+..+++.+++.++..|..-... ..+....-.+.-++..
T Consensus       110 -qtdd~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~  181 (507)
T 3u0r_A          110 -QTDDSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTE  181 (507)
T ss_dssp             -TCCCHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHH
T ss_pred             -hccchHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHH
Confidence             55555556666666666665432       34455555555556888998888777543211 1111111222234566


Q ss_pred             HHHhcCCCChhhHHHHHHHHHHhhcCCh-HHHHHHHHCCChHHHHHHhc------CCCccchHHHHHHHHH----HHhc-
Q 014945          288 LVELLRHPSPSVLIPALRTVGNIVTGDD-MQTQCIINHQALPCLLDLLT------QNYKKSIKKEACWTIS----NITA-  355 (415)
Q Consensus       288 L~~lL~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~~l~~L~~ll~------~~~~~~v~~~a~~~l~----nl~~-  355 (415)
                      +...|.+-...--...+.+|+.+-.... ...+.+     ++.+.....      .. ++........++.    -++. 
T Consensus       182 ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeL-----v~ii~eQa~L~~~f~~s-D~e~vdRlI~C~~~ALP~FS~~  255 (507)
T 3u0r_A          182 SKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQL-----VELVAEQADLEQTFNPS-DPDCVDRLLQCTRQAVPLFSKN  255 (507)
T ss_dssp             HHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHH-----HHHHHHHHTTTSCCCSS-CHHHHHHHHHHHHHHGGGCBTT
T ss_pred             HHHHhccccHHHHHHHHHHHHhcccccCchHHHHH-----HHHHHHHHhccCCCCCc-CHHHHHHHHHHHHHHHHHhccC
Confidence            7777765554444455556655543322 222222     333333321      12 3333333333332    2222 


Q ss_pred             -CCHHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHHHHHHHHHhCCCC
Q 014945          356 -GNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNATSGGS  400 (415)
Q Consensus       356 -~~~~~~~~l~~~~~i~~L~~~l~~-~~~~v~~~a~~aL~nl~~~~~  400 (415)
                       .+.....++++. ++|.+-.+-.. +.++.+...+.++..++..++
T Consensus       256 v~StkFv~y~~~k-IlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~  301 (507)
T 3u0r_A          256 VHSTRFVTYFCEQ-VLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCG  301 (507)
T ss_dssp             BCCHHHHHHHHHH-TGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCC
T ss_pred             CChHHHHHHHHHh-hccchhhccccccchHHHHHHHHHHHHHccCCC
Confidence             355656666665 77755443322 223477788888888887665

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=96.28  E-value=0.034  Score=52.17  Aligned_cols=187  Identities=19%  Similarity=0.167  Sum_probs=116.5

Q ss_pred             HHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHh
Q 014945           86 NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRL  165 (415)
Q Consensus        86 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l  165 (415)
                      .++..|+++|..+ ..- ++.      ..++..++..+..+. .+++..++-.|..+..    ....  -.++++.++..
T Consensus       243 PVRETaAQtLGaL-~hL-p~e------~~IL~qLV~~l~~~~-WEVRHGGLLGLKYL~D----LL~~--Ld~Vv~aVL~G  307 (800)
T 3oc3_A          243 PVRDAAAYLLSRI-YPL-IGP------NDIIEQLVGFLDSGD-WQVQFSGLIALGYLKE----FVED--KDGLCRKLVSL  307 (800)
T ss_dssp             HHHHHHHHHHHHH-TTT-SCS------CCHHHHHTTGGGCSC-HHHHHHHHHHHHHTGG----GCCC--HHHHHHHHHHH
T ss_pred             ehHHHHHHHHHHH-HhC-Chh------HHHHHHHHhhcCCCC-eeehhhhHHHHHHHHH----HHHH--HHHHHHHHHhh
Confidence            4566666666655 211 111      234555555556666 8999999988888711    1111  13568888899


Q ss_pred             hCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchh-HhHHHHHHHHHHHhhhCCCCCchhhhhchHH
Q 014945          166 LSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAK-LSMLRNATWTLSNFCRGKPQPLFEQTRPALP  244 (415)
Q Consensus       166 l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~  244 (415)
                      |.+.+++|+..|+.+|.-++  .+..-+.     .+..+-..|.+-++ ......++..|+.|+..++..  ......+|
T Consensus       308 L~D~DDDVRAVAAetLiPIA--~p~~l~~-----LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a--~~dp~LVP  378 (800)
T 3oc3_A          308 LSSPDEDIKLLSAELLCHFP--ITDSLDL-----VLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL--SIPPERLK  378 (800)
T ss_dssp             TTCSSHHHHHHHHHHHTTSC--CSSTHHH-----HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC--CCCSGGGG
T ss_pred             cCCcccHHHHHHHHHhhhhc--chhhHHH-----HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc--ccChHHHH
Confidence            99999999999999999998  2221122     23344445532222 223455666777777765321  11238899


Q ss_pred             HHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHH-hcCCCChhhHHHHHHHH
Q 014945          245 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE-LLRHPSPSVLIPALRTV  307 (415)
Q Consensus       245 ~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~-lL~~~~~~v~~~a~~~l  307 (415)
                      .|.+++.+.-..||..++.++..+.  ....         +..+.+ +|-.++++++..+..+-
T Consensus       379 RL~PFLRHtITSVR~AVL~TL~tfL--~~~~---------LRLIFQNILLE~neeIl~lS~~VW  431 (800)
T 3oc3_A          379 DIFPCFTSPVPEVRTSILNMVKNLS--EESI---------DFLVAEVVLIEEKDEIREMAIKLL  431 (800)
T ss_dssp             GTGGGGTCSSHHHHHHHHHHTTTCC--CHHH---------HHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred             HHHhhhcCCcHHHHHHHHHHHHHHH--hhhH---------HHHHHHHHHhCCcHHHHHHHHHHH
Confidence            9999999999999999999998887  2222         222222 23456666776666555

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=95.90  E-value=0.43  Score=41.77  Aligned_cols=173  Identities=12%  Similarity=0.055  Sum_probs=105.0

Q ss_pred             hHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCC----ChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCCch
Q 014945          116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHG----AVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPK  190 (415)
Q Consensus       116 i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g----~i~~L~~ll~~-~~~~v~~~a~~~L~nl~~~~~~  190 (415)
                      +..+.++++.+  .+.+.-++.++.-++.+ +.....+.+..    ++..+...+.+ ..+..+-.++++++|+..... 
T Consensus       105 l~~l~kil~WP--~~~~fPvLDLlRl~~l~-p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~-  180 (304)
T 3ebb_A          105 LQILWKAINCP--EDIVFPALDILRLSIKH-PSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQA-  180 (304)
T ss_dssp             HHHHHHHHTSC--TTTCHHHHHHHHHHTTS-HHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHH-
T ss_pred             HHHHHHHHcCC--HHhHHHHHHHHHHHHcC-ccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCch-
Confidence            56666666444  35666677777665553 54444443322    22334444443 356678899999999987766 


Q ss_pred             hHHHHHhcCChHHHHHHhc---cchhHhHHHHHHHHHHHhhhCC-CCCchhhhhchHHHHHHhhcC-CChhHHHHHHHHH
Q 014945          191 CRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHS-NDDEVLTDACWAL  265 (415)
Q Consensus       191 ~~~~~~~~g~i~~L~~~l~---~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~l~~lL~~-~d~~v~~~a~~~l  265 (415)
                      .++.+..  ....++..+.   .+.+..++..++.++.|++... ..........++..+..+++. .|.+....++-++
T Consensus       181 g~~~l~~--~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvAL  258 (304)
T 3ebb_A          181 GQKLMMS--QRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVAL  258 (304)
T ss_dssp             HHHHHHH--THHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             hHHHHHH--HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence            5566554  2344444432   3457778888888888888653 122223334455556666643 5889999999999


Q ss_pred             HHhccCChHHHHHHHHcCcHHHHHHhcCC
Q 014945          266 SYLSDGTNDKIQAVIEAGVCPRLVELLRH  294 (415)
Q Consensus       266 ~~l~~~~~~~~~~~~~~~~i~~L~~lL~~  294 (415)
                      +++...+.+..+....-|+-..+-...+.
T Consensus       259 GtL~~~~~~~~~lak~l~~~~~v~~~~~~  287 (304)
T 3ebb_A          259 GTLISDDSNAVQLAKSLGVDSQIKKYSSV  287 (304)
T ss_dssp             HHHHTTCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred             HHHHhCChhHHHHHHHcCHHHHHHHHHhC
Confidence            99998766554434344555555555544

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=95.77  E-value=1.9  Score=44.99  Aligned_cols=172  Identities=13%  Similarity=0.109  Sum_probs=110.7

Q ss_pred             hHHHHHHhccc---hhHhHHHHHHHHHHHhhh----CCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 014945          201 LMPLLAQFNEH---AKLSMLRNATWTLSNFCR----GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN  273 (415)
Q Consensus       201 i~~L~~~l~~~---~~~~~~~~a~~~l~~l~~----~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~  273 (415)
                      +..+..++...   .++.+...++.+++.+..    ..+......+..+...+.+.+...+.+-..-++.+|+|+...  
T Consensus       393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p--  470 (1056)
T 1lsh_A          393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP--  470 (1056)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG--
T ss_pred             HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh--
Confidence            34455555322   245566666666666653    333333344556666677777777888888999999998642  


Q ss_pred             HHHHHHHHcCcHHHHHHhcCC-------CChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhc-CCCccchHHH
Q 014945          274 DKIQAVIEAGVCPRLVELLRH-------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT-QNYKKSIKKE  345 (415)
Q Consensus       274 ~~~~~~~~~~~i~~L~~lL~~-------~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~~v~~~  345 (415)
                               ..++.|..++..       ....++..|+++|.+++...+...+        +.++++.. ..+++++|..
T Consensus       471 ---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~EvRia  533 (1056)
T 1lsh_A          471 ---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIR  533 (1056)
T ss_dssp             ---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHH
T ss_pred             ---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChHHHHH
Confidence                     235666666632       1346888999999999976654443        45777663 3337899999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHHHHHHHHHhCCCCH
Q 014945          346 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNATSGGSN  401 (415)
Q Consensus       346 a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~-~~~~v~~~a~~aL~nl~~~~~~  401 (415)
                      |+..|..-. -+..         .+..+...+.. .+.+|.......|.+++....+
T Consensus       534 A~~~Lm~t~-P~~~---------~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P  580 (1056)
T 1lsh_A          534 SCIVFFESK-PSVA---------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP  580 (1056)
T ss_dssp             HHHHHHHTC-CCHH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHC-cCHH---------HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence            998885322 2233         24445555554 6788888888888888887654

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=95.64  E-value=0.52  Score=39.55  Aligned_cols=139  Identities=12%  Similarity=0.140  Sum_probs=84.5

Q ss_pred             HHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcC----C------CChHHHHHHHHHHHHHhCCCchhhHHHHh-CCCh
Q 014945           91 ATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR----D------DFPQLQFEAAWALTNIASGTSENTRVVID-HGAV  159 (415)
Q Consensus        91 a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~----~------~~~~i~~~a~~~L~~l~~~~~~~~~~~~~-~g~i  159 (415)
                      .+..|+..+..++..-++.+ ..+++..|+.+|..    .      .+...+..++.||..+... ......+.. .+.+
T Consensus        21 ~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~-~~G~~~vl~~~~~i   98 (233)
T 2f31_A           21 CLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGI   98 (233)
T ss_dssp             HHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSS-HHHHHHHHTSSSHH
T ss_pred             HHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCC-hHHHHHHHcCcHHH
Confidence            34444444433222223445 35667777766642    1      1257788999999999874 455555555 5788


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhcCCCc-hh-HHHHHh----------cCChHHHHHHhccchhHhHHHHHHHHHHHh
Q 014945          160 PIFVRLLSSPTDDVREQAVWALGNVAGDSP-KC-RDLVLS----------NGALMPLLAQFNEHAKLSMLRNATWTLSNF  227 (415)
Q Consensus       160 ~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~-~~-~~~~~~----------~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l  227 (415)
                      ..+...|.++++.++..++..|+-+|..+. .. ...+++          ..-..+++..+....+.+....++..+-.+
T Consensus        99 ~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~l  178 (233)
T 2f31_A           99 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINAL  178 (233)
T ss_dssp             HHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence            999999999999999999999998886543 12 233322          223445566554344555555555555555


Q ss_pred             hhCC
Q 014945          228 CRGK  231 (415)
Q Consensus       228 ~~~~  231 (415)
                      ....
T Consensus       179 i~~~  182 (233)
T 2f31_A          179 ITPA  182 (233)
T ss_dssp             HTTC
T ss_pred             HCCC
Confidence            5543

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=95.52  E-value=0.8  Score=41.62  Aligned_cols=156  Identities=12%  Similarity=0.118  Sum_probs=101.3

Q ss_pred             HHHHhhcCCC-HHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcC----------CCChHHHHHHHHHHHHHh
Q 014945           75 AMVAGVWSDD-RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR----------DDFPQLQFEAAWALTNIA  143 (415)
Q Consensus        75 ~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~----------~~~~~i~~~a~~~L~~l~  143 (415)
                      .+++.|.+.- ..-....+..|+..+...+..-++.++ .+++..|+.+|..          ..+...+..++.||..+.
T Consensus        70 ~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm  148 (383)
T 3eg5_B           70 MYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM  148 (383)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh
Confidence            4555555442 222234566666665544233345666 5678888888752          112578899999999998


Q ss_pred             CCCchhhHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCc-hh-HHHHH----------hcCChHHHHHHhcc
Q 014945          144 SGTSENTRVVID-HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP-KC-RDLVL----------SNGALMPLLAQFNE  210 (415)
Q Consensus       144 ~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~-~~-~~~~~----------~~g~i~~L~~~l~~  210 (415)
                      -. ......++. ...+..|...+.++++.++..++..|+-+|..+. .. ...++          +..-...++..+..
T Consensus       149 N~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~  227 (383)
T 3eg5_B          149 NN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS  227 (383)
T ss_dssp             SS-HHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTST
T ss_pred             cc-hhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHc
Confidence            74 445555555 5789999999999999999999999999986553 21 23332          23346677777754


Q ss_pred             chhHhHHHHHHHHHHHhhhCCC
Q 014945          211 HAKLSMLRNATWTLSNFCRGKP  232 (415)
Q Consensus       211 ~~~~~~~~~a~~~l~~l~~~~~  232 (415)
                      ..+.+....++..+-.+....+
T Consensus       228 ~~~~e~~~~~m~lIN~li~~~~  249 (383)
T 3eg5_B          228 GTSIALKVGCLQLINALITPAE  249 (383)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCC
T ss_pred             cCcHHHHHHHHHHHHHHHcCCC
Confidence            4566777766666666666543

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=95.10  E-value=0.26  Score=43.29  Aligned_cols=129  Identities=14%  Similarity=0.154  Sum_probs=98.7

Q ss_pred             HHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHH-CCChHHHHHHhcCCCccchH
Q 014945          265 LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN-HQALPCLLDLLTQNYKKSIK  343 (415)
Q Consensus       265 l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~~v~  343 (415)
                      +.++.-++.+.++-+++.+++..+......++.++....+..|-.++....-.   +.. ...+|.++..+.-..++++.
T Consensus       266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~---~t~L~e~LPFi~~~i~~h~eDdvv  342 (619)
T 3c2g_A          266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALA---KTPLENILPFLLRLIEIHPDDEVI  342 (619)
T ss_dssp             HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGG---TSCCTTHHHHHHHHHHHCCCHHHH
T ss_pred             HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHh---hccccccchHHHHHhccCCCcceE
Confidence            34555567778889999999999999999999999999999998876543211   111 15678888877544488999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc-------CCHHHHHHHHHHHHHHh
Q 014945          344 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-------AEFEIKKEAAWAISNAT  396 (415)
Q Consensus       344 ~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~-------~~~~v~~~a~~aL~nl~  396 (415)
                      ......|+|+.++.....+..+.+|.++.|...+..       .+..-++.||..++|..
T Consensus       343 YSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~L  402 (619)
T 3c2g_A          343 YSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCL  402 (619)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHH
T ss_pred             EecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHH
Confidence            999999999999988877788899999999987643       23345666777777765

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=95.03  E-value=0.22  Score=43.61  Aligned_cols=110  Identities=13%  Similarity=0.072  Sum_probs=71.6

Q ss_pred             HHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhC--CChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhH--H
Q 014945          118 RFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDH--GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR--D  193 (415)
Q Consensus       118 ~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~--~  193 (415)
                      .+...+.+...+..+..++++++|+... +..+..+...  .+++.+...+.+++..++..+..++.|++...-..+  +
T Consensus       151 ~l~~~~~~~~~p~n~ml~lR~l~NlF~~-~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~  229 (304)
T 3ebb_A          151 HLINLLNPKGKPANQLLALRTFCNCFVG-QAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIE  229 (304)
T ss_dssp             HHHHTTCTTSCHHHHHHHHHHHHHGGGS-HHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHH
T ss_pred             HHHHhcCCCCChHHHHHHHHHHHHccCC-chhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCch
Confidence            4445555443467799999999999985 6666666542  345555556666789999999999999984211000  1


Q ss_pred             HHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhC
Q 014945          194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  230 (415)
Q Consensus       194 ~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~  230 (415)
                      ....  .+..+..++....+.+....++-++.+|...
T Consensus       230 ~~~~--ll~~l~~il~~~~d~EalyR~LvALGtL~~~  264 (304)
T 3ebb_A          230 GKAQ--CLSLISTILEVVQDLEATFRLLVALGTLISD  264 (304)
T ss_dssp             HHHH--HHHHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHH--HHHHHHHHHhccCCHHHHHHHHHHHHHHHhC
Confidence            1111  3344445554455778888888888888865

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=94.91  E-value=1.9  Score=44.98  Aligned_cols=167  Identities=15%  Similarity=0.185  Sum_probs=109.9

Q ss_pred             ChHHHHHhhCC----CCHHHHHHHHHHHHHhc----CCCchhHHHHHhcCChHHHHHHhc---cchhHhHHHHHHHHHHH
Q 014945          158 AVPIFVRLLSS----PTDDVREQAVWALGNVA----GDSPKCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSN  226 (415)
Q Consensus       158 ~i~~L~~ll~~----~~~~v~~~a~~~L~nl~----~~~~~~~~~~~~~g~i~~L~~~l~---~~~~~~~~~~a~~~l~~  226 (415)
                      .+..+..++.+    .++.+++.++-+++.+.    ...+.|..     ..++.+.+.+.   ...+..-...++.+|.|
T Consensus       392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~-----~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN  466 (1056)
T 1lsh_A          392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPD-----ELLQPLHDLLSQSSDRAKEEEIVLALKALGN  466 (1056)
T ss_dssp             HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCG-----GGTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCH-----HHHHHHHHHHHHHHhcCChHHHHHHHHHhhc
Confidence            35556667765    46778888888888875    22222211     12444444442   33456667888899999


Q ss_pred             hhhCCCCCchhhhhchHHHHHHhhcC-------CChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhc--CCCCh
Q 014945          227 FCRGKPQPLFEQTRPALPALERLIHS-------NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL--RHPSP  297 (415)
Q Consensus       227 l~~~~~~~~~~~~~~~l~~l~~lL~~-------~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL--~~~~~  297 (415)
                      +-..          ..++.|.+++..       ....++..|+++|..+....+...+        +.+++++  ...+.
T Consensus       467 ~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~  528 (1056)
T 1lsh_A          467 AGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKS  528 (1056)
T ss_dssp             HTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCH
T ss_pred             cCCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCCh
Confidence            8742          456777777742       1356889999999999877665543        5567777  44577


Q ss_pred             hhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCC
Q 014945          298 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN  357 (415)
Q Consensus       298 ~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~  357 (415)
                      ++|..|+..|-.  +.++ .       ..+..+...+....+..|.....-.|.+++..+
T Consensus       529 EvRiaA~~~Lm~--t~P~-~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~  578 (1056)
T 1lsh_A          529 ELRIRSCIVFFE--SKPS-V-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS  578 (1056)
T ss_dssp             HHHHHHHHHHHH--TCCC-H-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHH--HCcC-H-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence            899998877732  2222 1       235667777777557888888888888888743

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=94.69  E-value=0.62  Score=40.92  Aligned_cols=114  Identities=18%  Similarity=0.129  Sum_probs=87.3

Q ss_pred             HHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhc-CCCh
Q 014945          177 AVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-SNDD  255 (415)
Q Consensus       177 a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~-~~d~  255 (415)
                      +...|+-+ ..+....+-+....++..+...+ +-++.++.+..+..|...+... ..........+|.+...+. +++.
T Consensus       263 ~FDLL~LL-mHdSnAIDGFVk~DGv~~I~Tvi-nYpN~~l~RaG~KLLLQVSDak-sL~~t~L~e~LPFi~~~i~~h~eD  339 (619)
T 3c2g_A          263 TFDLLGLL-LHDSDAIDGFVRSDGVGAITTVV-QYPNNDLIRAGCKLLLQVSDAK-ALAKTPLENILPFLLRLIEIHPDD  339 (619)
T ss_dssp             HHHHHHHH-CCSHHHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHTTCG-GGGTSCCTTHHHHHHHHHHHCCCH
T ss_pred             HHHHHHHH-hcccccccceeecccceeEEEEe-ecCCcHHHHhhhheeeeecchH-HHhhccccccchHHHHHhccCCCc
Confidence            33344444 44444568888899999999998 7778888999999888887553 2222334677888888775 6788


Q ss_pred             hHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcC
Q 014945          256 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR  293 (415)
Q Consensus       256 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~  293 (415)
                      ++.......++|...+.....+..+..|++..|-..+.
T Consensus       340 dvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~  377 (619)
T 3c2g_A          340 EVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIIS  377 (619)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             ceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHh
Confidence            99999999999999998888888899999999888763

>2p8q_B Snurportin-1; heat repeat, IBB-domain, importin, karyopherin, transport; 2.35A {Homo sapiens} PDB: 2q5d_C 3lww_B

Probab=94.58  E-value=0.028  Score=31.84  Aligned_cols=38  Identities=37%  Similarity=0.545  Sum_probs=28.1

Q ss_pred             HHhhhccC-CCCchHHHHhHHHHHHHHHHHhhhHHHHhhhh
Q 014945           11 VRRSKYKV-AVDAEEGRRRREDNMVEIRKNKREESLLKKRR   50 (415)
Q Consensus        11 ~~~~~~k~-~~~~~~~r~~r~~~~~~lRk~~r~~~~~~~R~   50 (415)
                      +|...||+ +...++..++|+  ..+..|++|-+.++..|+
T Consensus         2 PR~sqYK~k~~~~~q~~rRr~--~L~~QK~~R~D~~nhaR~   40 (40)
T 2p8q_B            2 PRLSQYKSKYSSLEQSERRRR--LLELQKSKRLDYVNHARR   40 (40)
T ss_dssp             CCGGGTTCCCCSCSTTHHHHH--HHHHHHHHHHHHHHTTTC
T ss_pred             ccHHhhccccchhhHHHHHHH--HHHHHHHHHHHHHHHhcC
Confidence            68899999 455555555454  688999999998887764

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=94.41  E-value=2  Score=36.38  Aligned_cols=101  Identities=6%  Similarity=0.080  Sum_probs=71.3

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHH
Q 014945           73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV  152 (415)
Q Consensus        73 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~  152 (415)
                      +-.+++..+....+.+...+...+.++... ++.   +. ..+++.++.+..+++ .++|...+..+...+...++... 
T Consensus        17 v~~lln~A~~~~~~~kl~~L~qa~el~~~~-dp~---ll-~~~l~~il~~~~~~~-~~vrk~~~~Fi~e~~~~k~~l~~-   89 (257)
T 3gs3_A           17 VVDWCNELVIASPSTKCELLAKVQETVLGS-CAE---LA-EEFLESVLSLAHDSN-MEVRKQVVAFVEQVCKVKVELLP-   89 (257)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHHTTT-TGG---GH-HHHHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH-
T ss_pred             HHHHHHHhhhcCcHHHHHHHHHHHHHHHcc-CHh---HH-HHHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHHHHHHH-
Confidence            344455444433368888888888876543 221   11 236788888877776 89999999999888865443332 


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 014945          153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNV  184 (415)
Q Consensus       153 ~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl  184 (415)
                          ..++.|..++.++++.+...++.+.+++
T Consensus        90 ----~~l~~L~~Ll~d~d~~V~K~~I~~~~~i  117 (257)
T 3gs3_A           90 ----HVINVVSMLLRDNSAQVIKRVIQACGSI  117 (257)
T ss_dssp             ----HHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence                3577888899988999999999888876

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=94.15  E-value=3  Score=37.85  Aligned_cols=140  Identities=11%  Similarity=0.129  Sum_probs=90.1

Q ss_pred             HHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcC----C------CChHHHHHHHHHHHHHhCCCchhhHHHHh-CCCh
Q 014945           91 ATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR----D------DFPQLQFEAAWALTNIASGTSENTRVVID-HGAV  159 (415)
Q Consensus        91 a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~----~------~~~~i~~~a~~~L~~l~~~~~~~~~~~~~-~g~i  159 (415)
                      .+..|+..+..++..-++.+. .+++..|+.+|..    .      .+...+..++.||..+... ......++. .+++
T Consensus        25 ~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~-~~Gl~~vl~~~~~i  102 (386)
T 2bnx_A           25 CLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGI  102 (386)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSS-HHHHHHHHHSSSHH
T ss_pred             HHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCC-HHHHHHHHcCcHHH
Confidence            344455444433222234454 4567777766642    1      1257789999999998874 445555554 5788


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhcCCCc-hh-HHHHH----------hcCChHHHHHHhccchhHhHHHHHHHHHHHh
Q 014945          160 PIFVRLLSSPTDDVREQAVWALGNVAGDSP-KC-RDLVL----------SNGALMPLLAQFNEHAKLSMLRNATWTLSNF  227 (415)
Q Consensus       160 ~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~-~~-~~~~~----------~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l  227 (415)
                      ..+...|.++++.++..++..|+.+|..+. .. ...++          +..-+..++..+..+.+.+....++..+-.+
T Consensus       103 ~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~l  182 (386)
T 2bnx_A          103 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINAL  182 (386)
T ss_dssp             HHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence            999999999999999999999988886543 22 23322          2234566777775556677777777777777


Q ss_pred             hhCCC
Q 014945          228 CRGKP  232 (415)
Q Consensus       228 ~~~~~  232 (415)
                      ....+
T Consensus       183 v~~~~  187 (386)
T 2bnx_A          183 ITPAE  187 (386)
T ss_dssp             HTTCS
T ss_pred             HCCCC
Confidence            76644

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=93.93  E-value=3.6  Score=37.33  Aligned_cols=145  Identities=12%  Similarity=0.139  Sum_probs=92.4

Q ss_pred             chhhHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHh
Q 014945          147 SENTRVVIDHGAVPIFVRLLSS-----------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLS  215 (415)
Q Consensus       147 ~~~~~~~~~~g~i~~L~~ll~~-----------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~  215 (415)
                      ......+. .+++..|+.+|..           .+......++.||..+..........+-....+..+...+ .+.++.
T Consensus       100 ~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L-~s~~~~  177 (383)
T 3eg5_B          100 VSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAVPN  177 (383)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTC-CTTSHH
T ss_pred             cHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHh-CCCchH
Confidence            45556665 4567778877741           2457788899999999876665544444455677788887 778888


Q ss_pred             HHHHHHHHHHHhhhCCC-CCchhhh------------hchHHHHHHhhcC-CChhHHHHHHHHHHHhccCChHH------
Q 014945          216 MLRNATWTLSNFCRGKP-QPLFEQT------------RPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDK------  275 (415)
Q Consensus       216 ~~~~a~~~l~~l~~~~~-~~~~~~~------------~~~l~~l~~lL~~-~d~~v~~~a~~~l~~l~~~~~~~------  275 (415)
                      ++..++..|..+|.... ..-...+            ..-+..++..|.. .+.+....++..|..+....++.      
T Consensus       178 ~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~l  257 (383)
T 3eg5_B          178 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHI  257 (383)
T ss_dssp             HHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            99999999999998753 2201111            1124456777776 46777777777776666554422      


Q ss_pred             HHHHHHcCcHHHHHHhcCC
Q 014945          276 IQAVIEAGVCPRLVELLRH  294 (415)
Q Consensus       276 ~~~~~~~~~i~~L~~lL~~  294 (415)
                      ...+...|+.+.+-. |..
T Consensus       258 R~ef~~~Gl~~il~~-lr~  275 (383)
T 3eg5_B          258 RSELMRLGLHQVLQE-LRE  275 (383)
T ss_dssp             HHHHHHTTHHHHHHH-HTT
T ss_pred             HHHHHHCChHHHHHH-Hhc
Confidence            222445576555555 543

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=93.77  E-value=1.8  Score=45.91  Aligned_cols=244  Identities=11%  Similarity=0.050  Sum_probs=138.1

Q ss_pred             hHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhcCC-----CchhHHHHHhcCCh
Q 014945          129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLL--SSPTDDVREQAVWALGNVAGD-----SPKCRDLVLSNGAL  201 (415)
Q Consensus       129 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll--~~~~~~v~~~a~~~L~nl~~~-----~~~~~~~~~~~g~i  201 (415)
                      ...|.+|-..|..+-.. +         .....+...|  .+.+..++..|+..|.|....     +++.+..+.     
T Consensus        27 ~~~r~~Ae~~L~~~~~~-p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir-----   91 (1204)
T 3a6p_A           27 QRYRLEALKFCEEFKEK-C---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLK-----   91 (1204)
T ss_dssp             HHHHHHHHHHHHHHHHH-C---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHH-----
T ss_pred             hHHHHHHHHHHHHHHhC-c---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH-----
Confidence            67788888888776542 2         1333344433  346788999999999987632     233333322     


Q ss_pred             HHHHHHhccc------hhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC----
Q 014945          202 MPLLAQFNEH------AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG----  271 (415)
Q Consensus       202 ~~L~~~l~~~------~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~----  271 (415)
                      ..++..+...      .+..++..++.+++.++...-...   -..+++.++.++.+ ++.....++.+|..++..    
T Consensus        92 ~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~---Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~  167 (1204)
T 3a6p_A           92 NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH---WPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTF  167 (1204)
T ss_dssp             HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT---CTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc---chHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccc
Confidence            2344443222      356788888999999887641122   24677888888866 455567777787777532    


Q ss_pred             ---ChHHHHH---HHHc---CcHHHHHHhcCC-------------------CChhhHHHHHHHHHHhhcCChHHHHHHHH
Q 014945          272 ---TNDKIQA---VIEA---GVCPRLVELLRH-------------------PSPSVLIPALRTVGNIVTGDDMQTQCIIN  323 (415)
Q Consensus       272 ---~~~~~~~---~~~~---~~i~~L~~lL~~-------------------~~~~v~~~a~~~l~nl~~~~~~~~~~~~~  323 (415)
                         ...+...   .+..   .+++.+..++..                   .+..+...++.++.+...--+  ...+.+
T Consensus       168 ~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~--~~~i~~  245 (1204)
T 3a6p_A          168 QTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVS--MSHITA  245 (1204)
T ss_dssp             CCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSC--HHHHHT
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccC--HHHHHh
Confidence               1111111   1111   223333333322                   123466778888877765433  223334


Q ss_pred             CC--ChHHHHHHhcCCCccchHHHHHHHHHHHhcC--CHHHHHHHHHc---CCHHHHHHHhc--------cCCHHHHHHH
Q 014945          324 HQ--ALPCLLDLLTQNYKKSIKKEACWTISNITAG--NVNQIQAIIEA---GIIGPLVNLLL--------NAEFEIKKEA  388 (415)
Q Consensus       324 ~~--~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~--~~~~~~~l~~~---~~i~~L~~~l~--------~~~~~v~~~a  388 (415)
                      ..  +++.+..++.   ++.++..|+.+|..++..  .++....++..   ..+..++..+.        +.+.++.+..
T Consensus       246 ~~~~ll~~l~~~l~---~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l  322 (1204)
T 3a6p_A          246 ENCKLLEILCLLLN---EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRL  322 (1204)
T ss_dssp             TTSHHHHHHHHGGG---CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHH
T ss_pred             ccchHHHHHHHHcC---CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHH
Confidence            33  6777776654   468899999999999973  24433333321   01234444432        2245677777


Q ss_pred             HHHHHHHh
Q 014945          389 AWAISNAT  396 (415)
Q Consensus       389 ~~aL~nl~  396 (415)
                      +..+..+.
T Consensus       323 ~~ll~~lg  330 (1204)
T 3a6p_A          323 CQVLCALG  330 (1204)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77776665

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=93.64  E-value=3.9  Score=36.87  Aligned_cols=88  Identities=11%  Similarity=0.151  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHh
Q 014945           86 NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRL  165 (415)
Q Consensus        86 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l  165 (415)
                      +.+...+..+..++-.. ++.   + -.++++.++.+-.+.+ .++|...+..|...+....+...     .+++.|..+
T Consensus        40 ~~Kl~~L~q~~EL~l~~-dps---L-l~~fl~~il~f~~d~~-~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~L  108 (386)
T 3o2t_A           40 DSKITVLKQVQELIINK-DPT---L-LDNFLDEIIAFQADKS-IEVRKFVIGFIEEACKRDIELLL-----KLIANLNML  108 (386)
T ss_dssp             THHHHHHHHHHHHHHTT-CGG---G-GGGGHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcc-CHH---H-HHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence            46788888888875532 221   2 2457899999999888 99999999999888865444432     357788889


Q ss_pred             hCCCCHHHHHHHHHHHHHh
Q 014945          166 LSSPTDDVREQAVWALGNV  184 (415)
Q Consensus       166 l~~~~~~v~~~a~~~L~nl  184 (415)
                      |.++++.+...++.+.+++
T Consensus       109 L~d~d~~V~K~~I~~~tsl  127 (386)
T 3o2t_A          109 LRDENVNVVKKAILTMTQL  127 (386)
T ss_dssp             HTCSSHHHHHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHH
Confidence            9988999999999888886

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=93.20  E-value=3.3  Score=34.61  Aligned_cols=165  Identities=11%  Similarity=0.133  Sum_probs=97.3

Q ss_pred             chhhHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHh
Q 014945          147 SENTRVVIDHGAVPIFVRLLSS-----------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLS  215 (415)
Q Consensus       147 ~~~~~~~~~~g~i~~L~~ll~~-----------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~  215 (415)
                      ......+ ..+++..|+.+|..           .+......++.||..+..........+...+.+..+...+ .++++.
T Consensus        34 ~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L-~s~~~~  111 (233)
T 2f31_A           34 VSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAVPN  111 (233)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTC-CTTSHH
T ss_pred             cHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHh-CCCCch
Confidence            4455555 34667777776642           1356778899999999876665544444455677777777 778888


Q ss_pred             HHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcC-C
Q 014945          216 MLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-H  294 (415)
Q Consensus       216 ~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~  294 (415)
                      ++..++..|+.+|..+...      |..+.+++.+.               +...        .-+..-+..+++.|. +
T Consensus       112 ~r~~~leLL~~lc~~~~~~------G~~~~VL~Al~---------------~~~~--------~~e~~RF~~lv~~l~~~  162 (233)
T 2f31_A          112 MMIDAAKLLSALCILPQPE------DMNERVLEAMT---------------ERAE--------MDEVERFQPLLDGLKSG  162 (233)
T ss_dssp             HHHHHHHHHHHHHTCSSSS------CHHHHHHHHHH---------------HHHH--------HHTSCTTHHHHHTTSTT
T ss_pred             HHHHHHHHHHHHHhCCCCC------ChHHHHHHHHH---------------HHHH--------hCCcchHHHHHHHHhcC
Confidence            9999999999888764210      10222222221               1100        011223455666665 3


Q ss_pred             CChhhHHHHHHHHHHhhcCCh------HHHHHHHHCCChHHHHHHhcCCCccchH
Q 014945          295 PSPSVLIPALRTVGNIVTGDD------MQTQCIINHQALPCLLDLLTQNYKKSIK  343 (415)
Q Consensus       295 ~~~~v~~~a~~~l~nl~~~~~------~~~~~~~~~~~l~~L~~ll~~~~~~~v~  343 (415)
                      .+...+..++..+..++.+.+      ..+..+...|+.+.+-++=... ++.+.
T Consensus       163 ~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~-~~~L~  216 (233)
T 2f31_A          163 TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIE-NEDMK  216 (233)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCC-CHHHH
T ss_pred             ChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccC-CHHHH
Confidence            456777777777777777655      2334455667766665554433 44443

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=92.46  E-value=2  Score=37.03  Aligned_cols=137  Identities=11%  Similarity=0.055  Sum_probs=89.9

Q ss_pred             ChhHHHHHHHHHHHhccCChHHHHHHH-HcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHC--CChHHH
Q 014945          254 DDEVLTDACWALSYLSDGTNDKIQAVI-EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH--QALPCL  330 (415)
Q Consensus       254 d~~v~~~a~~~l~~l~~~~~~~~~~~~-~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~--~~l~~L  330 (415)
                      |.+-...++..|..++..-......+- +...+..|+ +.....+.+++.|.++|+.....+|.....+.+.  .++..+
T Consensus        41 D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~l  119 (315)
T 3qml_C           41 DIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKI  119 (315)
T ss_dssp             HHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHH
Confidence            455677888888888765443333222 223444444 3344567899999999999999999888877653  455555


Q ss_pred             HHHhcC----C--CccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccC--CHHHHHHHHHHHHHHh
Q 014945          331 LDLLTQ----N--YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNAT  396 (415)
Q Consensus       331 ~~ll~~----~--~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~--~~~v~~~a~~aL~nl~  396 (415)
                      +.-|..    .  ....+.+.-+.+|.-|...+..    + ....+..|.+++...  ++.++..++..+..+.
T Consensus       120 f~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~----F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f  188 (315)
T 3qml_C          120 MAALSNLNDSNHRSSNILIKRYLSILNELPVTSED----L-PIYSTVVLQNVYERNNKDKQLQIKVLELISKIL  188 (315)
T ss_dssp             HHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT----C---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh----h-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence            544422    1  1335667777777777765421    1 244667888888777  8999999998888887

>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*

Probab=90.35  E-value=10  Score=34.37  Aligned_cols=231  Identities=13%  Similarity=0.040  Sum_probs=120.1

Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC
Q 014945          152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK  231 (415)
Q Consensus       152 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~  231 (415)
                      ..++...+-.|+.+++++|+.-|+..-.+|..+-+.-...|..+.. .+-..+.+.+.......-....+.+++.+..+.
T Consensus       124 ~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk-~innif~~fiye~e~~~GIaeLLeilgsIinGf  202 (403)
T 3fga_B          124 KYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIINGF  202 (403)
T ss_dssp             TTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHC
T ss_pred             hhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHhcCcccCCCHHHHHHHHHHHHccc
Confidence            3444456788999999999999998888888876555544444432 122334444422222223445666666666665


Q ss_pred             CCC-chhhhhchHHHHHHhhcCCChh-HHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHH
Q 014945          232 PQP-LFEQTRPALPALERLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN  309 (415)
Q Consensus       232 ~~~-~~~~~~~~l~~l~~lL~~~d~~-v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~n  309 (415)
                      ..+ ......-+...|+.+-....-. .......++......++.....+     +..|+..=-..+..=...-+.-+..
T Consensus       203 a~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns~KevlFL~Ele~  277 (403)
T 3fga_B          203 ALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFLNELEE  277 (403)
T ss_dssp             CSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTCCSSCHHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhCCCCCcHHHHHHHHHHHH
Confidence            222 2222233344555555544322 22334444444444444433221     2333332222233223334444555


Q ss_pred             hhcCC-hHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHH-----HHhcCCHHHHHHHHHcCCHHHHHHHh----cc
Q 014945          310 IVTGD-DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS-----NITAGNVNQIQAIIEAGIIGPLVNLL----LN  379 (415)
Q Consensus       310 l~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~-----nl~~~~~~~~~~l~~~~~i~~L~~~l----~~  379 (415)
                      +.... +...+.+.. .++..+...+.++ +..|.+.|.....     ++...+...        ++|.+...+    ..
T Consensus       278 iLe~~~~~~f~~i~~-~lf~~la~ci~S~-hfqVAErAL~~wnNe~i~~li~~n~~~--------IlPii~p~L~~~~~~  347 (403)
T 3fga_B          278 ILDVIEPSEFVKIME-PLFRQLAKCVSSP-HFQVAERALYYWNNEYIMSLISDNAAK--------ILPIMFPSLYRNSKT  347 (403)
T ss_dssp             HHTTCCHHHHHHHHH-HHHHHHHHHHTCS-CHHHHHHHHGGGGCHHHHHHHHTTHHH--------HHHHHHHHHHHTTSC
T ss_pred             HHHhCCHHHHHHHHH-HHHHHHHHHHCCC-CHHHHHHHHHHhccHHHHHHHHHhHHH--------HHHHHHHHHHHHHHH
Confidence            55433 233332222 4667777888888 8888887765542     222222222        344444443    32


Q ss_pred             -CCHHHHHHHHHHHHHHhCC
Q 014945          380 -AEFEIKKEAAWAISNATSG  398 (415)
Q Consensus       380 -~~~~v~~~a~~aL~nl~~~  398 (415)
                       =+..++..|..++.-+...
T Consensus       348 HWn~~v~~l~~~vlk~l~e~  367 (403)
T 3fga_B          348 HWNKTIHGLIYNALKLFMEM  367 (403)
T ss_dssp             CSCHHHHHHHHHHHHHHHTT
T ss_pred             ccCHHHHHHHHHHHHHHHHh
Confidence             2678998888888887644

>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20

Probab=89.26  E-value=8.7  Score=35.40  Aligned_cols=226  Identities=12%  Similarity=0.075  Sum_probs=120.8

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCC-----c
Q 014945           73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT-----S  147 (415)
Q Consensus        73 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~-----~  147 (415)
                      +..|+..+.|.|+..+..--..|..+...  -...+.++...+-..+.+++.......-..+.+.+++.+..|-     .
T Consensus       164 i~~Ll~lfdSeDpRERd~LktiLhrIY~K--f~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKe  241 (449)
T 2npp_B          164 VLQLLELFDSEDPRERDFLKTTLHRIYGK--FLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE  241 (449)
T ss_dssp             HHHHHHTTTSSTHHHHHHHHHHHHHHHHS--CTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCH
T ss_pred             HHHHHHHcCCCChHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcH
Confidence            56788888888888887777777776543  2333444433344556666654332334556777888877653     2


Q ss_pred             hhhHHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHH
Q 014945          148 ENTRVVIDHGAVPIFVRLLSSPTD-DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN  226 (415)
Q Consensus       148 ~~~~~~~~~g~i~~L~~ll~~~~~-~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~  226 (415)
                      +++..+     ...|+.+.....- .-..+-..|+..+...++.....     ++..|+..- ..++..-...-+.-+..
T Consensus       242 ehk~fl-----~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~W-P~tns~KevlFL~elee  310 (449)
T 2npp_B          242 EHKIFL-----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYW-PKTHSPKEVMFLNELEE  310 (449)
T ss_dssp             HHHHHH-----HHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHTC-CSSCHHHHHHHHHHHHH
T ss_pred             HHHHHH-----HHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHH-----HHHHHHHhC-CCCCchHHHHHHHHHHH
Confidence            333222     2233334433321 22335556666665555543222     233344333 22232222223333444


Q ss_pred             hhhCCCCCch-hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHc---CcHHHHHHhcC-----CCCh
Q 014945          227 FCRGKPQPLF-EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLR-----HPSP  297 (415)
Q Consensus       227 l~~~~~~~~~-~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~i~~L~~lL~-----~~~~  297 (415)
                      +...-+...+ .....++..+..++.+++-.|.+.|+....|     +.. -.++..   .++|.+...|.     |-+.
T Consensus       311 ile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N-----~~i-~~li~~n~~~IlPii~p~L~~~s~~HWn~  384 (449)
T 2npp_B          311 ILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNN-----EYI-MSLISDNAAKILPIMFPSLYRNSKTHWNK  384 (449)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGC-----HHH-HHHHHTTHHHHHHHHHHHHTSCTTCCSST
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCC-----HHH-HHHHHhchhhhHHhhHHHHHHHHHHhcCH
Confidence            4433222222 2335677788888999998888887654322     111 122222   24566666552     3356


Q ss_pred             hhHHHHHHHHHHhhcCChHH
Q 014945          298 SVLIPALRTVGNIVTGDDMQ  317 (415)
Q Consensus       298 ~v~~~a~~~l~nl~~~~~~~  317 (415)
                      .++..+..++.-+...++..
T Consensus       385 ~V~~la~~vlk~l~e~d~~l  404 (449)
T 2npp_B          385 TIHGLIYNALKLFMEMNQKL  404 (449)
T ss_dssp             THHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHCHHH
Confidence            79999998888777766543

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=88.90  E-value=13  Score=33.63  Aligned_cols=165  Identities=11%  Similarity=0.119  Sum_probs=97.5

Q ss_pred             chhhHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHh
Q 014945          147 SENTRVVIDHGAVPIFVRLLSS-----------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLS  215 (415)
Q Consensus       147 ~~~~~~~~~~g~i~~L~~ll~~-----------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~  215 (415)
                      ..+...+. .+++..|+.+|..           .+......++.||..|.....+....+...+.+..+...+ .+.++.
T Consensus        38 ~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL-~s~~~~  115 (386)
T 2bnx_A           38 VSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAVPN  115 (386)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTC-CTTSHH
T ss_pred             cHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHh-CCCCch
Confidence            34455554 4566667776632           1456788899999999877666544454555677777777 677888


Q ss_pred             HHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcC-C
Q 014945          216 MLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-H  294 (415)
Q Consensus       216 ~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~  294 (415)
                      ++..++..|..+|......      |..+.++..+.               +..        ..-+..-+..++..+. +
T Consensus       116 ~r~~vleLL~alc~~~~~~------G~~~~VL~Al~---------------~~~--------~~~e~~RF~~lv~~l~~~  166 (386)
T 2bnx_A          116 MMIDAAKLLSALCILPQPE------DMNERVLEAMT---------------ERA--------EMDEVERFQPLLDGLKSG  166 (386)
T ss_dssp             HHHHHHHHHHHHHTCCSST------THHHHHHHHHH---------------HHH--------HHHTSCTTHHHHHHTSTT
T ss_pred             HHHHHHHHHHHHHcCCCCC------ChHHHHHHHHH---------------HHH--------HhCchhhHHHHHHHHHcC
Confidence            8888998998888764211      11222222221               110        0111223455666665 4


Q ss_pred             CChhhHHHHHHHHHHhhcCCh------HHHHHHHHCCChHHHHHHhcCCCccchH
Q 014945          295 PSPSVLIPALRTVGNIVTGDD------MQTQCIINHQALPCLLDLLTQNYKKSIK  343 (415)
Q Consensus       295 ~~~~v~~~a~~~l~nl~~~~~------~~~~~~~~~~~l~~L~~ll~~~~~~~v~  343 (415)
                      .+......++..+..++.+.+      ..+..+...|+.+.+-.+-... ++.+.
T Consensus       167 ~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~-~~~L~  220 (386)
T 2bnx_A          167 TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIE-NEDMK  220 (386)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCC-CHHHH
T ss_pred             ChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccC-ChhHH
Confidence            456777777777777777665      2344555667766665544333 54443

>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*

Probab=88.34  E-value=8.3  Score=34.93  Aligned_cols=224  Identities=13%  Similarity=0.097  Sum_probs=111.3

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCC-----c
Q 014945           73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT-----S  147 (415)
Q Consensus        73 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~-----~  147 (415)
                      +..|+..+.|.|+..+...-..|..+...  -...+.++...+-..+.+++.......-..+.+.+++.+..|-     .
T Consensus       131 i~~Ll~lfdSeDprER~~LktiLhrIY~k--f~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLke  208 (403)
T 3fga_B          131 VLQLLELFDSEDPRERDFLKTTLHRIYGK--FLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE  208 (403)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCH
T ss_pred             HHHHHHHcCCCChHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchH
Confidence            55677777788887777777777766432  2333333333333455555544321223345566666665542     1


Q ss_pred             hhhHHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHH
Q 014945          148 ENTRVVIDHGAVPIFVRLLSSPTD-DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN  226 (415)
Q Consensus       148 ~~~~~~~~~g~i~~L~~ll~~~~~-~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~  226 (415)
                      +++..+.     ..|+.+.....- .-..+...|+..+...+|.....     .+..|++.- ..++..-...-+.-+..
T Consensus       209 ehk~fl~-----~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~W-P~tns~KevlFL~Ele~  277 (403)
T 3fga_B          209 EHKIFLL-----KVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYW-PKTHSPKEVMFLNELEE  277 (403)
T ss_dssp             HHHHHHH-----HTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHTC-CSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHH-----HHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHH-----HHHHHHHhC-CCCCcHHHHHHHHHHHH
Confidence            2322222     223333333221 22345566666666555543232     223333333 22232222223333444


Q ss_pred             hhhCCCCCch-hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHc---CcHHHHHHhc-----CCCCh
Q 014945          227 FCRGKPQPLF-EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELL-----RHPSP  297 (415)
Q Consensus       227 l~~~~~~~~~-~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~i~~L~~lL-----~~~~~  297 (415)
                      +...-+...+ .....++..+..++.+++-.|.+.|+....     ++ .+-.++..   .++|.+...|     .|-+.
T Consensus       278 iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wn-----Ne-~i~~li~~n~~~IlPii~p~L~~~~~~HWn~  351 (403)
T 3fga_B          278 ILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWN-----NE-YIMSLISDNAAKILPIMFPSLYRNSKTHWNK  351 (403)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGG-----CH-HHHHHHHTTHHHHHHHHHHHHHHTTSCCSCH
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhc-----cH-HHHHHHHHhHHHHHHHHHHHHHHHHHHccCH
Confidence            4443222222 223556777888888998888887765432     12 12222222   2344444444     24467


Q ss_pred             hhHHHHHHHHHHhhcCCh
Q 014945          298 SVLIPALRTVGNIVTGDD  315 (415)
Q Consensus       298 ~v~~~a~~~l~nl~~~~~  315 (415)
                      .++..+..++.-+...++
T Consensus       352 ~v~~l~~~vlk~l~e~d~  369 (403)
T 3fga_B          352 TIHGLIYNALKLFMEMNQ  369 (403)
T ss_dssp             HHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHhCH
Confidence            888888888877765443

>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20

Probab=85.37  E-value=23  Score=32.66  Aligned_cols=235  Identities=14%  Similarity=0.054  Sum_probs=124.7

Q ss_pred             hHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhh
Q 014945          150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  229 (415)
Q Consensus       150 ~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~  229 (415)
                      ....++...+..|+.+++++|+.-|+..-.+|..|-+.-...|..+... +-..+.+.+.......-...++++++.+..
T Consensus       155 ~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fi~e~e~~nGIaeLLeilgSIin  233 (449)
T 2npp_B          155 AKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGSIIN  233 (449)
T ss_dssp             GGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHH-HHHHHHHHHHTCSCCSCHHHHHHHHHHHHS
T ss_pred             hhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCHHHHHHHHHHHHh
Confidence            3445556678899999999999999888888877765444444444331 233444554333333344567777777777


Q ss_pred             CCCCC-chhhhhchHHHHHHhhcCCChh-HHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHH
Q 014945          230 GKPQP-LFEQTRPALPALERLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV  307 (415)
Q Consensus       230 ~~~~~-~~~~~~~~l~~l~~lL~~~d~~-v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l  307 (415)
                      +...+ ......-+...|+.+.....-. .......++..+...++.....     ++..|+..=-..+..=...-+.-|
T Consensus       234 Gfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~WP~tns~KevlFL~el  308 (449)
T 2npp_B          234 GFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYWPKTHSPKEVMFLNEL  308 (449)
T ss_dssp             SCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHTCCSSCHHHHHHHHHHH
T ss_pred             ccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHH-----HHHHHHHhCCCCCchHHHHHHHHH
Confidence            65222 2222233345555655544322 2223334444444444433322     223333332222322223344455


Q ss_pred             HHhhcCC-hHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHH---cCCHHHHHHHhcc----
Q 014945          308 GNIVTGD-DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE---AGIIGPLVNLLLN----  379 (415)
Q Consensus       308 ~nl~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~---~~~i~~L~~~l~~----  379 (415)
                      ..+.... +...+.+.. -++..+...+.++ +..|.+.|.....     ++. +..++.   ..++|.+...+..    
T Consensus       309 eeile~~~~~ef~~i~~-~lF~~la~ci~S~-hfqVAErAL~~w~-----N~~-i~~li~~n~~~IlPii~p~L~~~s~~  380 (449)
T 2npp_B          309 EEILDVIEPSEFVKIME-PLFRQLAKCVSSP-HFQVAERALYYWN-----NEY-IMSLISDNAAKILPIMFPSLYRNSKT  380 (449)
T ss_dssp             HHHHTTCCHHHHHHHHH-HHHHHHHHHHTCS-CHHHHHHHHGGGG-----CHH-HHHHHHTTHHHHHHHHHHHHTSCTTC
T ss_pred             HHHHHhCCHHHHHHHHH-HHHHHHHHHHcCC-CHHHHHHHHHHHC-----CHH-HHHHHHhchhhhHHhhHHHHHHHHHH
Confidence            5555433 333332222 4667788888888 8888888775432     111 122222   1245666665532    


Q ss_pred             -CCHHHHHHHHHHHHHHhCC
Q 014945          380 -AEFEIKKEAAWAISNATSG  398 (415)
Q Consensus       380 -~~~~v~~~a~~aL~nl~~~  398 (415)
                       =+..++..|..++.-+...
T Consensus       381 HWn~~V~~la~~vlk~l~e~  400 (449)
T 2npp_B          381 HWNKTIHGLIYNALKLFMEM  400 (449)
T ss_dssp             CSSTTHHHHHHHHHHHHHTT
T ss_pred             hcCHHHHHHHHHHHHHHHHH
Confidence             2467888888888866655

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=83.24  E-value=2.2  Score=33.42  Aligned_cols=74  Identities=12%  Similarity=0.061  Sum_probs=55.2

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhC
Q 014945           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS  144 (415)
Q Consensus        71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~  144 (415)
                      +++..+.+.|++.++.++..|+..|-.++.........++....++..|+.++....++.++..++..+...+.
T Consensus        52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~  125 (163)
T 1x5b_A           52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE  125 (163)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence            46677888889999999999999998887654233334566677888888888763337888888887765553

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=82.57  E-value=2.7  Score=32.27  Aligned_cols=74  Identities=14%  Similarity=-0.002  Sum_probs=56.7

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCC-----CChHHHHHHHHHHHHHhC
Q 014945           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD-----DFPQLQFEAAWALTNIAS  144 (415)
Q Consensus        71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~-----~~~~i~~~a~~~L~~l~~  144 (415)
                      +++..+.+.|++.++.++..|+..|-.+....+.....++....++..|++++...     .++.++..++..+...+.
T Consensus        38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  116 (148)
T 1mhq_A           38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV  116 (148)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            46778888999999999999999999887764333445666778899999998741     237889888888766554

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=82.28  E-value=1.7  Score=32.97  Aligned_cols=72  Identities=14%  Similarity=0.115  Sum_probs=52.6

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHh
Q 014945           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIA  143 (415)
Q Consensus        71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~  143 (415)
                      +++..+.+.|++.++..+..|+..|-.+....+.....++....++..|+.+++..+ +.++..++..+...+
T Consensus        42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~-~~Vk~kil~li~~W~  113 (140)
T 3ldz_A           42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGH-PKVCEKLKALMVEWT  113 (140)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCC-HHHHHHHHHHHHHHH
Confidence            456778888888999999999988888776542233334556667788888887666 888888887776655

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=80.75  E-value=3.3  Score=31.73  Aligned_cols=73  Identities=11%  Similarity=0.003  Sum_probs=56.1

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcC------CCChHHHHHHHHHHHHHhC
Q 014945           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR------DDFPQLQFEAAWALTNIAS  144 (415)
Q Consensus        71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~------~~~~~i~~~a~~~L~~l~~  144 (415)
                      +++..+.+.+++.++.++..|+..|-.+..........++....++..|++++..      .+ +.++..++..+...+.
T Consensus        48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~-~~Vk~kil~li~~W~~  126 (149)
T 3g2s_A           48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTS-EKVKNKILELLYSWTV  126 (149)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSC-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCC-HHHHHHHHHHHHHHHH
Confidence            4677888889999999999999999888765433334556677788999999874      34 7888888888876654

>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17

Probab=80.27  E-value=23  Score=29.04  Aligned_cols=127  Identities=9%  Similarity=-0.016  Sum_probs=65.0

Q ss_pred             HHHhhcCCChhHHHHHHHHHHHhccC-ChHHHHHHHHcCcHHHHHHhcC-CCChhhHHHHHHHHHHhhcCChHHHHHHHH
Q 014945          246 LERLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCIIN  323 (415)
Q Consensus       246 l~~lL~~~d~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~  323 (415)
                      +..+.+++.-+.+.-++..+...... .++.         ++.+-.++. -+++.+....+.+++.++...+..      
T Consensus        60 ~~~L~~s~~~E~r~la~~~l~~~~~~~~~~~---------l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~~------  124 (220)
T 2b6c_A           60 IEAYYQKTEREYQYVAIDLALQNVQRFSLEE---------VVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLTE------  124 (220)
T ss_dssp             HHHHHTSSSHHHHHHHHHHHHHTGGGCCHHH---------HHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGGG------
T ss_pred             HHHHHcCchhHHHHHHHHHHHHHHhhCCHHH---------HHHHHHHhccCCcHHHHHHHHHHHHHHHHHChHH------
Confidence            34445555566666666666554322 2211         122222332 345566665556666665443321      


Q ss_pred             CCChHHHHHHhcCCCccchHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945          324 HQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG  398 (415)
Q Consensus       324 ~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~  398 (415)
                        +.+.+.....++ +.-+|+.|+-.+..... ++++.        +++.+-..+.+++.-|++...|+|..+...
T Consensus       125 --~~~~i~~W~~s~-~~w~rR~ai~~~l~~~~~~~~~~--------~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~  189 (220)
T 2b6c_A          125 --LPTIFALFYGAE-NFWNRRVALNLQLMLKEKTNQDL--------LKKAIIYDRTTEEFFIQKAIGWSLRQYSKT  189 (220)
T ss_dssp             --HHHHHHHHTTCS-SHHHHHHHHHTTTTCGGGCCHHH--------HHHHHHHTTTCCCHHHHHHHHHHHHHHTTT
T ss_pred             --HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHCCCHHH--------HHHHHHHhCCChHHHHHHHHHHHHHHHHhh
Confidence              234566667666 66666666554322221 23321        123333355667777777777777777766

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	415
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	2e-92
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	2e-11
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	4e-10
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	1e-60
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	1e-11
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	1e-08
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	9e-39
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-16
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-13
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	8e-13
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	7e-09
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	3e-21
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-18
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-13
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	4e-13
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	4e-11
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	1e-10
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-10
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	2e-12
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	6e-12
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	8e-04
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	1e-11
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	2e-08
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	3e-08
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	1e-04
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	5e-11
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	8e-08
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	6e-07
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	9e-06
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	1e-05
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	6e-05
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	0.001
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	0.002
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	1e-04

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  285 bits (729), Expect = 2e-92
 Identities = 215/406 (52%), Positives = 272/406 (66%), Gaps = 14/406 (3%)

Query: 10  EVRRSKYKVA--VDAEEGRRRREDNMVEIRKNKREESLLKKRR---------EGLQAHQP 58
           E RR+ +K      A+E RRRR+   VE+RK KR+E+L K+R             +    
Sbjct: 4   EYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESS 63

Query: 59  LTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPR 118
           ++      ++  + LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR
Sbjct: 64  VSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPR 123

Query: 119 FIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAV 178
            +EF+  +    LQ EAAWALTNIASGTS  T+VV+D  AVP+F++LL + + +V+EQA+
Sbjct: 124 LVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAI 183

Query: 179 WALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFE 237
           WALGNVAGDS   RD VL   A+ P+L  FN + K S++R ATWTLSN CRGK PQP + 
Sbjct: 184 WALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWS 242

Query: 238 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP 297
               ALP L +LI+S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S 
Sbjct: 243 VVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHEST 302

Query: 298 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 357
            V  PALR VGNIVTG+D+QTQ +IN   LP L  LL  + K++IKKEACWTISNITAGN
Sbjct: 303 LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL-SSPKENIKKEACWTISNITAGN 361

Query: 358 VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ 403
             QIQA+I+A +I PLV LL  AE++ KKEA WAISNA+SGG    
Sbjct: 362 TEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRP 407

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.6 bits (153), Expect = 2e-11
 Identities = 24/132 (18%), Positives = 56/132 (42%), Gaps = 1/132 (0%)

Query: 285 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT-QCIINHQALPCLLDLLTQNYKKSIK 343
            P++ + L        + A      I++ +       +I    +P L++ + +N  + ++
Sbjct: 78  LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 137

Query: 344 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ 403
            EA W ++NI +G   Q + +++A  +   + LL     E+K++A WA+ N     ++ +
Sbjct: 138 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 197

Query: 404 IKYKFFYVSRTC 415
                       
Sbjct: 198 DYVLQCNAMEPI 209

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.0 bits (141), Expect = 4e-10
 Identities = 39/190 (20%), Positives = 80/190 (42%), Gaps = 16/190 (8%)

Query: 125 RDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV 184
             +   +Q  A  A+ NI +G    T+VVI+ G +P    LLSSP ++++++A W + N+
Sbjct: 298 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNI 357

Query: 185 AGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG----KPQPLFEQTR 240
              + +    V+    L+P L +  E A+    + A W +SN   G         +  ++
Sbjct: 358 TAGNTEQIQAVIDAN-LIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQ 416

Query: 241 PALPALERLIHSNDDEVLTDACWALSYL-----------SDGTNDKIQAVIEAGVCPRLV 289
             +  L  L+   D+ ++     AL  +               N+    + +AG   ++ 
Sbjct: 417 GCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIF 476

Query: 290 ELLRHPSPSV 299
              ++ +  +
Sbjct: 477 NCQQNENDKI 486

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  200 bits (509), Expect = 1e-60
 Identities = 174/340 (51%), Positives = 232/340 (68%), Gaps = 6/340 (1%)

Query: 72  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 14  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 73

Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 74  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 133

Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPAL 246
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K   P  +     LP L
Sbjct: 134 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 193

Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 194 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 253

Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE 366
           +GNIVTG D QTQ +I+  AL     LL  N K +I+KEA WT+SNITAG  +QIQ ++ 
Sbjct: 254 IGNIVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVN 312

Query: 367 AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY 406
            G++  LV +L  A+F+ +KEAAWAI+N TSGG+ EQI Y
Sbjct: 313 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY 352

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.7 bits (153), Expect = 1e-11
 Identities = 57/279 (20%), Positives = 116/279 (41%), Gaps = 9/279 (3%)

Query: 81  WSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALT 140
            S      L   T     L   ++P         ++P  +  L  +D      ++ WA++
Sbjct: 155 LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEV-LADSCWAIS 213

Query: 141 NIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGA 200
            +  G +E   +V+  G VP  V+LL +    +   A+ A+GN+   + +    V+  GA
Sbjct: 214 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGA 273

Query: 201 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ-TRPALPALERLIHSNDDEVLT 259
            + +      + K ++ + ATWT+SN   G+   + +      +P L  ++   D +   
Sbjct: 274 -LAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQK 332

Query: 260 DACWALSYL-SDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV-----TG 313
           +A WA++   S GT ++I  ++  G+   L+ LL      ++   L  + NI       G
Sbjct: 333 EAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG 392

Query: 314 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 352
           +  +   +I        ++ L ++  +S+ K +   I  
Sbjct: 393 ETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEK 431

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.0 bits (128), Expect = 1e-08
 Identities = 30/136 (22%), Positives = 59/136 (43%), Gaps = 9/136 (6%)

Query: 99  LSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS-GTSENTRVVIDHG 157
           ++  R   I +V+  G+VP  +  +      + Q EAAWA+TN  S GT E    ++  G
Sbjct: 299 ITAGRQDQIQQVVNHGLVPFLVG-VLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCG 357

Query: 158 AVPIFVRLLSSPTDDVREQAVWALGNVA------GDSPKCRDLVLSNGALMPLLAQFNEH 211
            +   + LLS+    + +  + A+ N+       G++ K   ++   G L   +     H
Sbjct: 358 IIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGL-DKIEALQRH 416

Query: 212 AKLSMLRNATWTLSNF 227
              S+ + +   +  +
Sbjct: 417 ENESVYKASLNLIEKY 432

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  143 bits (359), Expect = 9e-39
 Identities = 41/319 (12%), Positives = 88/319 (27%), Gaps = 29/319 (9%)

Query: 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVRE 175
           +P+ +++LS  D  + Q   A+ + +         + V   G +   V LL SP  +V++
Sbjct: 4   IPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 176 QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 235
            A  AL N+   S   +        +   ++         + +  T  L N         
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 236 FEQTRPALPALERLI---------------HSNDDEVLTDACWALSYLSDGTNDKIQAVI 280
                      +R+I                  D EV  +A   L  LS     +     
Sbjct: 123 ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182

Query: 281 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN--- 337
            +G+   L+  +++   +           +    ++  +           L+   +N   
Sbjct: 183 YSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT 242

Query: 338 ----------YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKE 387
                         +              N      +  +  I   +NL+  ++ +   E
Sbjct: 243 EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLE 302

Query: 388 AAWAISNATSGGSNEQIKY 406
           A        +         
Sbjct: 303 ACAGALQNLTASKGLMSSG 321

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.1 bits (193), Expect = 1e-16
 Identities = 44/308 (14%), Positives = 92/308 (29%), Gaps = 28/308 (9%)

Query: 113 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDD 172
           SG              P++ F A   L N++S  +    +    G +   +  + +    
Sbjct: 141 SGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAA 200

Query: 173 VR------EQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE-------HAKLSMLRN 219
            R      E  +  L N++                    A   +       +    M+ N
Sbjct: 201 SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNN 260

Query: 220 ATWTLSNFCRGKPQPLFEQTRPAL--PALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ 277
                       P+              L  +  S  D  L     AL  L+        
Sbjct: 261 NYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320

Query: 278 A-----VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD 332
                  ++    P++  LL+  +  V+      + N+          ++ +Q  P +  
Sbjct: 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTR 378

Query: 333 LLTQNYKKS-----IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFE-IKK 386
           LLT +   +     I   AC+T+ N+ A      +    + ++  ++NL  ++      +
Sbjct: 379 LLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAE 438

Query: 387 EAAWAISN 394
            A   +S+
Sbjct: 439 AARLLLSD 446

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.9 bits (169), Expect = 1e-13
 Identities = 35/225 (15%), Positives = 73/225 (32%), Gaps = 14/225 (6%)

Query: 141 NIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGA 200
            + +   +      +           S+ +D +              +PK    +  + A
Sbjct: 225 EVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDA 284

Query: 201 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTR------PALPALERLIHSND 254
           +   L    +  K + L      L N    K       ++        LP + RL+ S +
Sbjct: 285 IRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGN 344

Query: 255 DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH------PSPSVLIPALRTVG 308
            +V+      LS +S   +  +  V+   V P +  LL         S  +L  A  TV 
Sbjct: 345 SDVVRSGASLLSNMS--RHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVR 402

Query: 309 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 353
           N++       +   +   L  +++L   +      + A   +S++
Sbjct: 403 NLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.5 bits (163), Expect = 8e-13
 Identities = 26/210 (12%), Positives = 61/210 (29%), Gaps = 19/210 (9%)

Query: 199 GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP---QPLFEQTRPALPALERLIHSNDD 255
           G  +P   Q+             + + + C       Q +++     +  L  L+ S + 
Sbjct: 1   GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLG--GICKLVDLLRSPNQ 58

Query: 256 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD 315
            V   A  AL  L   +                V LLR    + +   L  +   ++  D
Sbjct: 59  NVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD 118

Query: 316 MQTQCIINHQALPCLLDLL--------------TQNYKKSIKKEACWTISNITAGNVNQI 361
              + +I          ++               +     +   A   + N+++ +  + 
Sbjct: 119 ELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQ 178

Query: 362 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWA 391
                +G+I  L+  + N     + +    
Sbjct: 179 TMRNYSGLIDSLMAYVQNCVAASRCDDKSV 208

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (130), Expect = 7e-09
 Identities = 21/130 (16%), Positives = 44/130 (33%), Gaps = 9/130 (6%)

Query: 108 NEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS 167
              ++   +P+      +     +    A  L+N++         V+ +   P   RLL+
Sbjct: 325 LIGLKEKGLPQIARL-LQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTRLLT 381

Query: 168 S------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNAT 221
           S       ++D+   A + + N+    P+      S+  L  ++      A       A 
Sbjct: 382 SHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAAR 441

Query: 222 WTLSNFCRGK 231
             LS+    K
Sbjct: 442 LLLSDMWSSK 451

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.5 bits (223), Expect = 3e-21
 Identities = 46/260 (17%), Positives = 89/260 (34%), Gaps = 9/260 (3%)

Query: 101 IERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVP 160
           +E+      V+   + P   E     D  Q +  A   L ++     +N         + 
Sbjct: 4   VEQMKSCLRVLSQPMPPTAGEAEQAAD-QQEREGALELLADLCE-NMDNAADFCQLSGMH 61

Query: 161 IFV-RLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRN 219
           + V R L +    +R +A   +G  + +    ++ VL  GAL  LL   +  A  ++   
Sbjct: 62  LLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVK 121

Query: 220 ATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA 278
           A + +S   R +    L          L R +     ++   + + L  L  G  +    
Sbjct: 122 ALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGT 181

Query: 279 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN-----HQALPCLLDL 333
           +   G+  +LV L+R          L  + ++VT      +          + L     L
Sbjct: 182 LCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQL 241

Query: 334 LTQNYKKSIKKEACWTISNI 353
           L Q+ +   + E C  +   
Sbjct: 242 LQQHEEYQEELEFCEKLLQT 261

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.9 bits (208), Expect = 2e-18
 Identities = 62/345 (17%), Positives = 116/345 (33%), Gaps = 12/345 (3%)

Query: 70  LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI--QSGVVPRFIEFLSRDD 127
             ++P +   +  +D+ +   A     +L   E        I     +V   +  +   +
Sbjct: 16  TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE---ASRHAIMRSPQMVSAIVRTMQNTN 72

Query: 128 FPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 187
             +     A  L N++    E    +   G +P  V++L SP D V   A+  L N+   
Sbjct: 73  DVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH 131

Query: 188 SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALE 247
               +  V   G L  ++A  N+     +              +   L         AL 
Sbjct: 132 QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV 191

Query: 248 RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 307
            ++ +   E L      +  +    +    A++EAG    L   L  PS  ++   L T+
Sbjct: 192 NIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 251

Query: 308 GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEA 367
            N+              + L   L  L  +   ++   A   +SN+T  N      + + 
Sbjct: 252 RNLSD----AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV 307

Query: 368 GIIGPLVNLLLNAEF--EIKKEAAWAISNATSGGSNEQIKYKFFY 410
           G I  LV  +L A    +I + A  A+ + TS     ++      
Sbjct: 308 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVR 352

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.9 bits (169), Expect = 2e-13
 Identities = 21/123 (17%), Positives = 44/123 (35%), Gaps = 1/123 (0%)

Query: 272 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLL 331
            N +  A +     P L +LL      V+  A   V  +   +  +   + + Q +  ++
Sbjct: 6   INYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIV 65

Query: 332 DLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWA 391
             +         +    T+ N++        AI ++G I  LV +L +    +   A   
Sbjct: 66  RTMQNTNDVETARCTAGTLHNLSHHREGL-LAIFKSGGIPALVKMLGSPVDSVLFYAITT 124

Query: 392 ISN 394
           + N
Sbjct: 125 LHN 127

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.4 bits (165), Expect = 4e-13
 Identities = 30/199 (15%), Positives = 58/199 (29%), Gaps = 23/199 (11%)

Query: 112 QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTD 171
               +P  ++ L       L       + N+A     N   + + GA+P  V+LL     
Sbjct: 353 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL-CPANHAPLREQGAIPRLVQLLVRAHQ 411

Query: 172 DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231
           D + +                                       ++   T  L    R  
Sbjct: 412 DTQRRTSMGGTQ---------------------QQFVEGVRMEEIVEGCTGALHILARDV 450

Query: 232 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 291
              +  +    +P   +L++S  + +   A   L  L+    +  +A+   G    L EL
Sbjct: 451 HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTEL 509

Query: 292 LRHPSPSVLIPALRTVGNI 310
           L   +  V   A   +  +
Sbjct: 510 LHSRNEGVATYAAAVLFRM 528

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (149), Expect = 4e-11
 Identities = 51/319 (15%), Positives = 98/319 (30%), Gaps = 25/319 (7%)

Query: 99  LSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGA 158
           L+         ++ SG     +  +    + +L       +  + S  S N   +++ G 
Sbjct: 170 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLL-WTTSRVLKVLSVCSSNKPAIVEAGG 228

Query: 159 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLR 218
           +      L+ P+  + +  +W L N++  + K   +    G L+ LL   + +       
Sbjct: 229 MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAG 288

Query: 219 NATWTLSNFCRGKPQPLFEQTRPALPAL--ERLIHSNDDEVLTDACWALSYLSDGTNDKI 276
             +    N  + K          AL           +  E    A   L+          
Sbjct: 289 ILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQ 348

Query: 277 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ 336
            AV      P +V+LL  PS   LI A   +   +         +    A+P L+ LL +
Sbjct: 349 NAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVR 408

Query: 337 NYKK---------------------SIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVN 375
            ++                       I +     +  +     N+   I     I   V 
Sbjct: 409 AHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNR-IVIRGLNTIPLFVQ 467

Query: 376 LLLNAEFEIKKEAAWAISN 394
           LL +    I++ AA  +  
Sbjct: 468 LLYSPIENIQRVAAGVLCE 486

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.7 bits (145), Expect = 1e-10
 Identities = 42/273 (15%), Positives = 91/273 (33%), Gaps = 28/273 (10%)

Query: 127 DFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS--SPTDDVREQAVWALGNV 184
           D   +   AA  L+N+     +N  +V   G +   VR +      +D+ E A+ AL ++
Sbjct: 278 DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL 337

Query: 185 AGDS---PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRP 241
                     ++ V  +  L  ++   +  +   +++     + N           + + 
Sbjct: 338 TSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQG 397

Query: 242 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 301
           A+P L +L+     +         +        +++ ++E                    
Sbjct: 398 AIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTG---------------- 441

Query: 302 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI 361
            AL     I+  D      I     +P  + LL  +  ++I++ A   +  +        
Sbjct: 442 -ALH----ILARDVHNRIVIRGLNTIPLFVQLL-YSPIENIQRVAAGVLCELAQDKEAA- 494

Query: 362 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN 394
           +AI   G   PL  LL +    +   AA  +  
Sbjct: 495 EAIEAEGATAPLTELLHSRNEGVATYAAAVLFR 527

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (143), Expect = 2e-10
 Identities = 29/172 (16%), Positives = 57/172 (33%), Gaps = 44/172 (25%)

Query: 98  LLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHG 157
           L+ +      +   ++ +     +F+      ++      AL  +A     N  V+    
Sbjct: 402 LVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD-VHNRIVIRGLN 460

Query: 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSML 217
            +P+FV+LL SP ++++  A   L  +A D  +  + + + G                  
Sbjct: 461 TIPLFVQLLYSPIENIQRVAAGVLCELAQD-KEAAEAIEAEG------------------ 501

Query: 218 RNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 269
                                   A   L  L+HS ++ V T A   L  +S
Sbjct: 502 ------------------------ATAPLTELLHSRNEGVATYAAAVLFRMS 529

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (155), Expect = 6e-12
 Identities = 48/289 (16%), Positives = 91/289 (31%), Gaps = 29/289 (10%)

Query: 73  LPAMVAGVWSDDRN--IQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQ 130
           L A++ G+  ++ +  ++L AT      L   ++    E  +  ++    E     D  +
Sbjct: 173 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-TR 231

Query: 131 LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 190
           ++  A   L  I S   +     +      I +  + S  D+V  Q +    NV  +   
Sbjct: 232 VRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMD 291

Query: 191 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ------------ 238
                             ++      L+     L+     + +   +             
Sbjct: 292 LAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCL 351

Query: 239 -----------TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR 287
                          LP ++  I + D      A  A   + +G        +     P 
Sbjct: 352 MLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPT 411

Query: 288 LVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ 336
           L+EL++ PS  V   A  TVG I    ++  +  IN   L  LL  L +
Sbjct: 412 LIELMKDPSVVVRDTAAWTVGRIC---ELLPEAAINDVYLAPLLQCLIE 457

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 8e-04
 Identities = 29/192 (15%), Positives = 56/192 (29%), Gaps = 7/192 (3%)

Query: 60  TNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF 119
              + +D   L+ +         +       +    +       S    +     +VP  
Sbjct: 266 AMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPIL 325

Query: 120 IEFLSRDDFPQL--QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQA 177
            + L++ D       +    A        +      I    +P     + +P    R+ A
Sbjct: 326 TQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAA 385

Query: 178 VWALGNVA-GDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 236
           V A G +  G  P     ++     MP L +  +   + +   A WT+   C   P+   
Sbjct: 386 VMAFGCILEGPEPSQLKPLVIQ--AMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAI 443

Query: 237 EQTR--PALPAL 246
                 P L  L
Sbjct: 444 NDVYLAPLLQCL 455

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (155), Expect = 1e-11
 Identities = 33/299 (11%), Positives = 94/299 (31%), Gaps = 13/299 (4%)

Query: 95  FRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI 154
             +L        +   +   +  R    +++ +   +Q EA   + ++ S          
Sbjct: 111 IGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFH 170

Query: 155 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKL 214
               +   +  L+SP   VR++ + ALG++          ++    +  LL++ +++  +
Sbjct: 171 PS-ILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN----IVFVDLIEHLLSELSKNDSM 225

Query: 215 SMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND 274
           S  R     ++   R     + E     +P + +  + +DDE+      A          
Sbjct: 226 STTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK 285

Query: 275 KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL 334
           ++   +   +    ++ L +       P           + M      +           
Sbjct: 286 EVYPHVST-IINICLKYLTYD------PNYNYDDEDEDENAMDADGGDDDDQGSDDEYSD 338

Query: 335 TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAIS 393
             +    +++ A   +  + +     +    +  +   L++     E  +K +   A  
Sbjct: 339 DDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKT-VSPALISRFKEREENVKADVFHAYL 396

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 2e-08
 Identities = 48/340 (14%), Positives = 99/340 (29%), Gaps = 50/340 (14%)

Query: 30   EDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKKLESLPAMVAGVWSDDRNIQL 89
               + E+    R   L       +            +N     L  M+ G          
Sbjct: 729  GSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALT 788

Query: 90   DATTQFRKLLSIERSPPINEVIQSGVVPRFI-EFLSRDDFPQLQFEAAWALTNIASGTSE 148
               + +     +             VV +FI +  +      ++  A  +L  +      
Sbjct: 789  HKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDL 848

Query: 149  NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA---------------GDSPKCRD 193
            + ++ +      + +   SSP+++V+  A +ALG+++                  PK + 
Sbjct: 849  SGQLEL----KSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQY 904

Query: 194  LVLSN-----------------GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 236
            L+L +                   +  LL +  E A+          L       P+ L 
Sbjct: 905  LLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETL- 963

Query: 237  EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS 296
                  LP L+  + S      +    A+ +        I  +++       ++ L  P 
Sbjct: 964  ------LPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLK-NCIGDFLKTLEDPD 1016

Query: 297  PSVLIPALRTVGNIVTGDDMQTQCIINH--QALPCLLDLL 334
             +V   AL T  +       +   I +     LP L +  
Sbjct: 1017 LNVRRVALVTFNSAA---HNKPSLIRDLLDTVLPHLYNET 1053

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (127), Expect = 3e-08
 Identities = 41/281 (14%), Positives = 87/281 (30%), Gaps = 10/281 (3%)

Query: 129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 188
              +F A   L       S       +   V + ++LL     +V+  AV  LG +    
Sbjct: 17  KDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKV 76

Query: 189 PKCRDLVLSNGALMPLLAQFNE---HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPA 245
            + +   + +  L   +    E         L+     L     G         +     
Sbjct: 77  KEYQVETIVD-TLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRL 135

Query: 246 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 305
              +    D  V  +A   ++ +       +     + +   L+  L  P  +V    + 
Sbjct: 136 TSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPS-ILTCLLPQLTSPRLAVRKRTII 194

Query: 306 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII 365
            +G++V          +    +  LL  L++N   S  +     I+ I+    ++I   +
Sbjct: 195 ALGHLVMSCGNI----VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYL 250

Query: 366 EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY 406
           E  II  +V      + E+++    A  +       E   +
Sbjct: 251 EK-IIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPH 290

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 29/178 (16%), Positives = 54/178 (30%), Gaps = 15/178 (8%)

Query: 82   SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTN 141
               + + L +  +     S+    P  E I + ++               +   A  L  
Sbjct: 900  PKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLK-----HCECAEEGTRNVVAECLGK 954

Query: 142  IASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL 201
            +     E          +P     L S +   R   V A+     D P+  D +L N   
Sbjct: 955  LTLIDPET--------LLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKN--C 1004

Query: 202  MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLT 259
            +    +  E   L++ R A  T ++    KP  + +     LP L        + +  
Sbjct: 1005 IGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIRE 1062

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 8e-08
 Identities = 46/321 (14%), Positives = 97/321 (30%), Gaps = 34/321 (10%)

Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR-DDFPQL 131
           L  +V           L        L                ++P  I+  +   D  + 
Sbjct: 521 LDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKD 580

Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
            F     L+++A+          +    P++ R ++     + +  +        ++P  
Sbjct: 581 LFPLLECLSSVATALQSGFLPYCE----PVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDK 636

Query: 192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH 251
             ++++   L  L      + +           SN                L  + + + 
Sbjct: 637 DFMIVALDLLSGLAEGLGGNIE------QLVARSNI---------------LTLMYQCMQ 675

Query: 252 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311
               EV   +   L  L+      ++  I     P L   L     SV   A   +G I 
Sbjct: 676 DKMPEVRQSSFALLGDLTKACFQHVKPCIAD-FMPILGTNLNPEFISVCNNATWAIGEIS 734

Query: 312 --TGDDMQTQCIINHQALPCLLDLL-TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG 368
              G +MQ         L  L++++   N  K++ +    TI  +      ++  +++  
Sbjct: 735 IQMGIEMQPYI---PMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQ- 790

Query: 369 IIGPLVNLLLNAEFEIKKEAA 389
            I P    L N     +K++A
Sbjct: 791 FIRPWCTSLRNIRDNEEKDSA 811

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 6e-07
 Identities = 49/309 (15%), Positives = 99/309 (32%), Gaps = 13/309 (4%)

Query: 82  SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTN 141
           S+D   +  +    +  +           +   +    +  +     P ++      +T 
Sbjct: 57  SEDEPTRSLSGLILKNNVK-AHFQNFPNGVTDFIKSECLNNIGDSS-PLIRATVGILITT 114

Query: 142 IASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNG-- 199
           IAS              +P    LL S   +  E A  AL  +  DS +  D  + +   
Sbjct: 115 IASKGELQNW----PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPL 170

Query: 200 -ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVL 258
             ++P   QF +H+   +  +A   ++ F   + Q L          L  L    + EV 
Sbjct: 171 NIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVR 230

Query: 259 TDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT 318
            + C AL  L +   D++   +   +   +++  +    +V   AL      +T  +   
Sbjct: 231 KNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENV---ALEACEFWLTLAEQPI 286

Query: 319 QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL 378
              +  + LP L+ +L    K S                +   +  I             
Sbjct: 287 CKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQ 346

Query: 379 NAEFEIKKE 387
           + E  I++E
Sbjct: 347 HDEDGIEEE 355

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 9e-06
 Identities = 41/333 (12%), Positives = 93/333 (27%), Gaps = 22/333 (6%)

Query: 83  DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNI 142
           D+ +     +    +  S      +  V +  ++P  +  L    F          +  +
Sbjct: 360 DEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVL 419

Query: 143 ASGTSENTRVVIDHGA--VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGA 200
            +      + +I +    +P  ++ LS     VR    W L   A               
Sbjct: 420 GAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPL 479

Query: 201 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTD 260
           +  LL +  +  K  +   A    +         L       L  L         + L  
Sbjct: 480 MTELLKRILDSNK-RVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLI 538

Query: 261 ACWALSYLSDGTNDKI-QAVIEAGVCPRLVELLRHP--SPSVLIPALRTVGNIVTGDDM- 316
              A+  L+D     + +      + P L++           L P L  + ++ T     
Sbjct: 539 LYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSG 598

Query: 317 --------------QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQ 362
                           Q  +    L        +   K     A   +S +  G    I+
Sbjct: 599 FLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIE 658

Query: 363 AII-EAGIIGPLVNLLLNAEFEIKKEAAWAISN 394
            ++  + I+  +   + +   E+++ +   + +
Sbjct: 659 QLVARSNILTLMYQCMQDKMPEVRQSSFALLGD 691

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 1e-05
 Identities = 21/154 (13%), Positives = 48/154 (31%), Gaps = 9/154 (5%)

Query: 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVRE 175
           +         D    ++  A   L  +     +          +P  + +   P    R 
Sbjct: 442 LNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW---AHATIIPKVLAMSGDPNYLHRM 498

Query: 176 QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 235
             ++ +  ++    +  D+   +  ++P + +       ++  N   +L           
Sbjct: 499 TTLFCINVLSEVCGQ--DITTKH--MLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNST 554

Query: 236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLS 269
            +      P LE+L    D +V   A  AL+ LS
Sbjct: 555 LQSE--VKPILEKLTQDQDVDVKYFAQEALTVLS 586

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 6e-05
 Identities = 24/194 (12%), Positives = 59/194 (30%), Gaps = 12/194 (6%)

Query: 117 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQ 176
              I  L+ D   +++      +  +A           D     + +  L      +RE 
Sbjct: 404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF---FDEKLNSLCMAWLVDHVYAIREA 460

Query: 177 AVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 236
           A   L  +     K      ++  ++P +   +            + ++       Q + 
Sbjct: 461 ATSNLKKLVEKFGKE----WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDIT 516

Query: 237 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS 296
            +    LP + R+       V  +   +L  +    ++     +++ V P L +L +   
Sbjct: 517 TKH--MLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS---TLQSEVKPILEKLTQDQD 571

Query: 297 PSVLIPALRTVGNI 310
             V   A   +  +
Sbjct: 572 VDVKYFAQEALTVL 585

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 4/77 (5%)

Query: 109 EVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS 168
           ++    ++P  +     D    ++F  A +L  I      +T   +     PI  +L   
Sbjct: 514 DITTKHMLPTVLRMAG-DPVANVRFNVAKSLQKIGPILDNST---LQSEVKPILEKLTQD 569

Query: 169 PTDDVREQAVWALGNVA 185
              DV+  A  AL  ++
Sbjct: 570 QDVDVKYFAQEALTVLS 586

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 16/139 (11%), Positives = 47/139 (33%), Gaps = 8/139 (5%)

Query: 47  KKRREGLQAHQPLTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPP 106
           + R   ++    L     ++    +     +A +      I+  AT+  +KL+       
Sbjct: 417 RVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW 476

Query: 107 INEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLL 166
            +  I    +P+ +      ++        + +  ++    ++   +     +P  +R+ 
Sbjct: 477 AHATI----IPKVLAMSGDPNYLHRM-TTLFCINVLSEVCGQD---ITTKHMLPTVLRMA 528

Query: 167 SSPTDDVREQAVWALGNVA 185
             P  +VR     +L  + 
Sbjct: 529 GDPVANVRFNVAKSLQKIG 547

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 41.0 bits (94), Expect = 1e-04
 Identities = 24/254 (9%), Positives = 57/254 (22%), Gaps = 37/254 (14%)

Query: 125 RDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV 184
            D     +  +A  L                  AV + +   S      R+   + LG +
Sbjct: 29  DDHNSLKRISSARVLQLRG-----------GQDAVRLAIEFCSDKNYIRRDIGAFILGQI 77

Query: 185 AGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALP 244
                   +          L           +   A  + +  C+  P      +   + 
Sbjct: 78  KICKKCEDN------VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVE 127

Query: 245 ALERLIHSNDDEVLTDACWALSYLSDGT-----------NDKIQAVIEAGVCPRLVELLR 293
             +         V     +A+S ++D              +       A           
Sbjct: 128 QSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNS 187

Query: 294 HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 353
                 +         +     +      + + L  L D L +N   ++  +       +
Sbjct: 188 DIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKN---TVYDDIIEAAGEL 244

Query: 354 TAGNVNQIQAIIEA 367
             G+   +  +   
Sbjct: 245 --GDKTLLPVLDTM 256

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	415
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.87
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.82
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.58
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.56
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.5
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.46
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.44
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.42
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.41
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.36
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.33
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.33
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.18
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.14
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.01
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.01
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.97
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.96
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.93
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.86
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.84
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.8
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.67
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.46
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.58
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.41
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	97.41
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	96.72
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	96.63
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.58
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	96.49
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	95.76
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	94.87
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	92.92
d2jaka1	343	Serine/threonine-protein phosphatase 2A regulatory	91.19
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	84.39
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	83.25
d2b6ca1	213	Hypothetical protein EF3068 {Enterococcus faecalis	81.99
d2b6ca1	213	Hypothetical protein EF3068 {Enterococcus faecalis	81.13
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	80.97
d2jaka1	343	Serine/threonine-protein phosphatase 2A regulatory	80.25

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-53  Score=411.95  Aligned_cols=403  Identities=54%  Similarity=0.829  Sum_probs=351.0

Q ss_pred             ccHHHhhhccC-CC-CchHHHHhHHHHHHHHHHHhhhHHHHhhhhccccCCCC-CCc--------hhhhhhhhhccHHHH
Q 014945            8 RTEVRRSKYKV-AV-DAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQP-LTN--------SAALDNKKLESLPAM   76 (415)
Q Consensus         8 ~~~~~~~~~k~-~~-~~~~~r~~r~~~~~~lRk~~r~~~~~~~R~~~~~~~~~-~~~--------~~~~~~~~~~~i~~l   76 (415)
                      .+++|++.||+ |+ +++|+||||+++.++|||+||++.++|||+........ ++.        ......+..+.++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~e~r~kR~~~~veiRk~kr~e~l~kkR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   81 (503)
T d1wa5b_           2 VPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQM   81 (503)
T ss_dssp             CCGGGCC-----------CCCCCTTSSCCCCSCCCCCSCCSCCCCC----------------------------CCHHHH
T ss_pred             CchHHhHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHHhhcCCCcccccccccchhccccchhhHHHHHHHHHHHHH
Confidence            47899999999 74 99999999999999999999999999999764332211 111        011112223578999


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhC
Q 014945           77 VAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDH  156 (415)
Q Consensus        77 ~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~  156 (415)
                      ++.++++|+..+..|+..++++++.+..++++.+++.|++|.|+++++++.++.++..|+|+|++++.+++..+..+.+.
T Consensus        82 ~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~  161 (503)
T d1wa5b_          82 TQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDA  161 (503)
T ss_dssp             HHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhC
Confidence            99999999999999999999999887788899999999999999999876558899999999999999988899999999


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC-CCCc
Q 014945          157 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPL  235 (415)
Q Consensus       157 g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~  235 (415)
                      |+++.++.+|.+++.++++.|+|+|+||+.+++.+++.+.+.|++++|+.++ .+.+..+++.++|++.+++... +...
T Consensus       162 g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll-~~~~~~~~~~~~~~l~nl~~~~~~~~~  240 (503)
T d1wa5b_         162 DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKPQPD  240 (503)
T ss_dssp             TCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred             CChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhc-ccCCHHHHHHHHHHHHHHhcCCccchH
Confidence            9999999999999999999999999999999999999999999999999999 6677789999999999999876 5566


Q ss_pred             hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh
Q 014945          236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD  315 (415)
Q Consensus       236 ~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~  315 (415)
                      .....+++|.++.++.++|++++..++|++.+++...++....+++.|+++.++.++.++++.++..++.++++++.+.+
T Consensus       241 ~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~  320 (503)
T d1wa5b_         241 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND  320 (503)
T ss_dssp             HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHH
Confidence            67778999999999999999999999999999999988888889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHH
Q 014945          316 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA  395 (415)
Q Consensus       316 ~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl  395 (415)
                      .....+++.|+++.+..++.++ ++.+++.++|+++|++.++++....+++.|+++.++..+.+++++++.+|+|+|.|+
T Consensus       321 ~~~~~~~~~~~l~~l~~ll~~~-~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl  399 (503)
T d1wa5b_         321 LQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNA  399 (503)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHhhhccchHHHHHHHhcCC-CHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHH
Confidence            9999999999999999999998 999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCC--HHHHHHHHHHhhCCC
Q 014945          396 TSGGS--NEQIKYKFFYVSRTC  415 (415)
Q Consensus       396 ~~~~~--~~~~~~l~~~~~~g~  415 (415)
                      +.++.  ++++.++   ++.|+
T Consensus       400 ~~~~~~~~~~~~~l---~~~~~  418 (503)
T d1wa5b_         400 SSGGLQRPDIIRYL---VSQGC  418 (503)
T ss_dssp             HHHTTTCTHHHHHH---HHTTC
T ss_pred             HhcccccHHHHHHH---HHCCc
Confidence            97653  5778888   77774

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.2e-39  Score=303.24  Aligned_cols=341  Identities=52%  Similarity=0.855  Sum_probs=314.0

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh
Q 014945           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  150 (415)
Q Consensus        71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  150 (415)
                      .+++.+++.++++|++.+..|+..++++++...+++++.+++.|++|.|+++|++.++++++..|+|+|++++.++++.+
T Consensus        13 ~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~   92 (434)
T d1q1sc_          13 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT   92 (434)
T ss_dssp             CCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhh
Confidence            57899999999999999999999999998877677788899999999999999876558899999999999999888999


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccch----hHhHHHHHHHHHHH
Q 014945          151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA----KLSMLRNATWTLSN  226 (415)
Q Consensus       151 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~----~~~~~~~a~~~l~~  226 (415)
                      ..+++.|+++.++.+|.++++++++.|+++|+|++.+++..+..+.+.|+++.++.++....    .......++|++.+
T Consensus        93 ~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~  172 (434)
T d1q1sc_          93 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN  172 (434)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred             hHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999995432    23567889999999


Q ss_pred             hhhCC-CCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHH
Q 014945          227 FCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR  305 (415)
Q Consensus       227 l~~~~-~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~  305 (415)
                      ++... .........+++|.+..++.+++++++..++|++.+++..+++....+...|+++.+++++.++++.++..+++
T Consensus       173 ~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~  252 (434)
T d1q1sc_         173 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR  252 (434)
T ss_dssp             HTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred             HhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhh
Confidence            99876 44555667889999999999999999999999999999988888787888899999999999999999999999


Q ss_pred             HHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHH
Q 014945          306 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIK  385 (415)
Q Consensus       306 ~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~  385 (415)
                      ++++++.+++.....+++.|+++.+..++.++ ++.++..|+|+++|++.++++....+.+.|+++.++.++.+++++++
T Consensus       253 ~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~  331 (434)
T d1q1sc_         253 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQ  331 (434)
T ss_dssp             HHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHH
T ss_pred             hhhhHHhhhhHHHHHHHhccccchHHHhhccc-chhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHH
Confidence            99999999988889999999999999999998 99999999999999999889989999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHhhCCC
Q 014945          386 KEAAWAISNATSGGSNEQIKYKFFYVSRTC  415 (415)
Q Consensus       386 ~~a~~aL~nl~~~~~~~~~~~l~~~~~~g~  415 (415)
                      ..|+|+|+|++.+++.+++.++   ++.|+
T Consensus       332 ~~a~~~l~nl~~~~~~~~~~~l---~~~~~  358 (434)
T d1q1sc_         332 KEAAWAITNYTSGGTVEQIVYL---VHCGI  358 (434)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHH---HHTTC
T ss_pred             HHHHHHHHHHHhcCCHHHHHHH---HHCCc
Confidence            9999999999999999999888   88775

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-33  Score=270.43  Aligned_cols=324  Identities=27%  Similarity=0.364  Sum_probs=290.8

Q ss_pred             ccHHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchh
Q 014945           71 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  149 (415)
Q Consensus        71 ~~i~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  149 (415)
                      |.+|.|++.+++ .++.++..|+++|.++.+.. ......+.+.|+++.++.+|.+++ .+++..|+|+|+|++.++++.
T Consensus       119 g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~-~~~~~~~~~~g~i~~l~~lL~s~~-~~i~~~a~~~L~nia~~~~~~  196 (503)
T d1wa5b_         119 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTDY  196 (503)
T ss_dssp             TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHhCCChHHHHHHhcCCC-hhHHHHHHHHHHHHhhhhHHH
Confidence            679999999985 56789999999999997654 455667889999999999999988 899999999999999988999


Q ss_pred             hHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhh
Q 014945          150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  229 (415)
Q Consensus       150 ~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~  229 (415)
                      +..+.+.|+++.|+.++.+.+..++..++|+|.|++.............++++.++.++ .+.+.+++..++|++.+++.
T Consensus       197 r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l-~~~d~~~~~~~~~~l~~l~~  275 (503)
T d1wa5b_         197 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSD  275 (503)
T ss_dssp             HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHhhcc
Confidence            99999999999999999999999999999999999976554455556678999999999 77888999999999999997


Q ss_pred             CCCCC-chhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHH
Q 014945          230 GKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG  308 (415)
Q Consensus       230 ~~~~~-~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~  308 (415)
                      ..+.. ......++++.++.++.+++..+...+++++++++.+.+.....+++.|+++.+..++.++++.++..++|+++
T Consensus       276 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~  355 (503)
T d1wa5b_         276 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS  355 (503)
T ss_dssp             SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             CCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            65322 23344688999999999999999999999999999998888888999999999999999999999999999999


Q ss_pred             HhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc---CCHHHHHHHHHcCCHHHHHHHhccCCHHHH
Q 014945          309 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIK  385 (415)
Q Consensus       309 nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~---~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~  385 (415)
                      |++.+++.....+++.|+++.++.++.++ +..++.+|+|+|+|++.   ..++.+..+++.|+++.|+++|...++++.
T Consensus       356 nl~~~~~~~~~~i~~~~~l~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~  434 (503)
T d1wa5b_         356 NITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII  434 (503)
T ss_dssp             HHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHH
T ss_pred             HHhhccHHHHHHHHHccccchhHHhcccC-ChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHH
Confidence            99999998999999999999999999998 99999999999999996   246778899999999999999999999999


Q ss_pred             HHHHHHHHHHhCC
Q 014945          386 KEAAWAISNATSG  398 (415)
Q Consensus       386 ~~a~~aL~nl~~~  398 (415)
                      ..++.+|.++...
T Consensus       435 ~~~L~~l~~ll~~  447 (503)
T d1wa5b_         435 EVTLDALENILKM  447 (503)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998743

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.6e-32  Score=256.98  Aligned_cols=323  Identities=28%  Similarity=0.444  Sum_probs=286.4

Q ss_pred             ccHHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchh
Q 014945           71 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  149 (415)
Q Consensus        71 ~~i~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  149 (415)
                      |.+|.|++.|++ +++.++..|+++|.++++.. ......+++.|++|.|+.+|.+++ ++++..|+++|++++.++++.
T Consensus        56 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~-~~~~~~i~~~~~i~~l~~~L~~~~-~~~~~~a~~~L~nl~~~~~~~  133 (434)
T d1q1sc_          56 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAF  133 (434)
T ss_dssp             TCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCC-hhhhhHhhhccchhhhhhccccCC-HHHHHHHHHHHHHHhccchHH
Confidence            789999999975 56789999999999997654 455677889999999999999988 999999999999999988889


Q ss_pred             hHHHHhCCChHHHHHhhCCCC-----HHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHH
Q 014945          150 TRVVIDHGAVPIFVRLLSSPT-----DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTL  224 (415)
Q Consensus       150 ~~~~~~~g~i~~L~~ll~~~~-----~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l  224 (415)
                      +..+.+.|+++.++.++...+     ......++|++.+++...+.........++++.+..++ .+.+++++..++|++
T Consensus       134 ~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll-~~~~~~~~~~a~~~l  212 (434)
T d1q1sc_         134 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAI  212 (434)
T ss_dssp             HHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHH-hccccchhhhHHhhh
Confidence            999999999999999998643     35567889999999987665555555666888888888 777889999999999


Q ss_pred             HHhhhCCCCC-chhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHH
Q 014945          225 SNFCRGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPA  303 (415)
Q Consensus       225 ~~l~~~~~~~-~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a  303 (415)
                      .+++...+.. ......+++|.++.++.++++.++..+++++.+++.+++.....+++.|+++.+..+|.++++.++..+
T Consensus       213 ~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a  292 (434)
T d1q1sc_         213 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA  292 (434)
T ss_dssp             HHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHH
T ss_pred             cccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHH
Confidence            9999775322 223346899999999999999999999999999999888887889999999999999999999999999


Q ss_pred             HHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHhccCCH
Q 014945          304 LRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEF  382 (415)
Q Consensus       304 ~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~i~~L~~~l~~~~~  382 (415)
                      ++++++++.+.+.....+.+.|+++.++.++.++ ++.++..|+|+++|++. ++++.+..+.+.|+++.|+++++++++
T Consensus       293 ~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~  371 (434)
T d1q1sc_         293 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT  371 (434)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCH
T ss_pred             HHHHhhhccccchhHHHHhhhhhHHHHHHHHhcc-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCH
Confidence            9999999998888888899999999999999999 99999999999999997 578888899999999999999999999


Q ss_pred             HHHHHHHHHHHHHhC
Q 014945          383 EIKKEAAWAISNATS  397 (415)
Q Consensus       383 ~v~~~a~~aL~nl~~  397 (415)
                      +++..++++|.++..
T Consensus       372 ~~~~~~l~~l~~ll~  386 (434)
T d1q1sc_         372 KIIQVILDAISNIFQ  386 (434)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999999974

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.1e-29  Score=239.58  Aligned_cols=321  Identities=21%  Similarity=0.234  Sum_probs=276.2

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHH-hcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchh
Q 014945           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI-QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  149 (415)
Q Consensus        71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  149 (415)
                      +.+|.|+++|+++|..++..|+..+.++...  ......++ ..|+++.|+.+|.+.++++++..|+++|.+++. +++.
T Consensus        17 ~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~--~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~-~~~~   93 (529)
T d1jdha_          17 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKK--EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREG   93 (529)
T ss_dssp             CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTS--HHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-SHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--cHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-Cchh
Confidence            5789999999999999999999999999643  23344444 457899999999875548999999999999997 4888


Q ss_pred             hHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhh
Q 014945          150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  229 (415)
Q Consensus       150 ~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~  229 (415)
                      +..+++.|+++.|+.+|.++++.++..|+++|+|++.+.+..+..+.+.|+++.|+.++ +++++.++..+++++.+++.
T Consensus        94 ~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~~l~~  172 (529)
T d1jdha_          94 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL-NKTNVKFLAITTDCLQILAY  172 (529)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGG-GCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHH-HccChHHHHHHHHHHHHHhh
Confidence            89999999999999999999999999999999999998888889999999999999999 77889999999999999997


Q ss_pred             CC-CCCchhhhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHH
Q 014945          230 GK-PQPLFEQTRPALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV  307 (415)
Q Consensus       230 ~~-~~~~~~~~~~~l~~l~~lL~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l  307 (415)
                      .. .........++++.++.++.+. +..++..+++++.+++...+. ...+++.|+++.|..++.+++..++..+++++
T Consensus       173 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~-~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l  251 (529)
T d1jdha_         173 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN-KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL  251 (529)
T ss_dssp             TCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTH-HHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHH
T ss_pred             hhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccc-cchhhhhhhhhhHHHHhcccchhhhhhhhhHH
Confidence            75 2233344578899999999654 578999999999999876554 46689999999999999999999999999999


Q ss_pred             HHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhc--cCCHHHH
Q 014945          308 GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL--NAEFEIK  385 (415)
Q Consensus       308 ~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~--~~~~~v~  385 (415)
                      .++.......   ....|+++.|+.++.++ ++.++..|+++|+|++.++++....+.+.|+++.|+..+.  .+.++++
T Consensus       252 ~~ls~~~~~~---~~~~~~i~~Lv~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~  327 (529)
T d1jdha_         252 RNLSDAATKQ---EGMEGLLGTLVQLLGSD-DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT  327 (529)
T ss_dssp             HHHHTTCTTC---SCCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHH
T ss_pred             Hhccccccch---hhhhhcchhhhhhcccc-cHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHH
Confidence            9998654421   12237899999999998 9999999999999999998998888999999999999885  3567899


Q ss_pred             HHHHHHHHHHhCCCC
Q 014945          386 KEAAWAISNATSGGS  400 (415)
Q Consensus       386 ~~a~~aL~nl~~~~~  400 (415)
                      ..|+++|.+++....
T Consensus       328 ~~a~~aL~~l~~~~~  342 (529)
T d1jdha_         328 EPAICALRHLTSRHQ  342 (529)
T ss_dssp             HHHHHHHHHHTSSST
T ss_pred             HHHHHHhhcccchhh
Confidence            999999999997654

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.7e-28  Score=233.18  Aligned_cols=323  Identities=15%  Similarity=0.162  Sum_probs=278.4

Q ss_pred             ccHHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchh
Q 014945           71 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  149 (415)
Q Consensus        71 ~~i~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  149 (415)
                      +.++.++..|.+ ++++.+..|+.+|.++.. . .+....+++.|++|.|+.+|++++ ++++..|+++|++++.+++..
T Consensus        59 ~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~-~-~~~~~~i~~~g~i~~Li~lL~~~~-~~v~~~a~~aL~~l~~~~~~~  135 (529)
T d1jdha_          59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSH-H-REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA  135 (529)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-S-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTH
T ss_pred             hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-C-chhHHHHHHCCCHHHHHHHhCCCC-HHHHHHHHHHHHHhhcccchh
Confidence            468899999974 678999999999999853 2 566677899999999999999988 999999999999999988888


Q ss_pred             hHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhh
Q 014945          150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  229 (415)
Q Consensus       150 ~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~  229 (415)
                      +..+.+.|+++.|+.+|.++++.++..++++|++++..++..+..+...|+++.++.++...++..++..+++++.+++.
T Consensus       136 ~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~  215 (529)
T d1jdha_         136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  215 (529)
T ss_dssp             HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred             hhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhc
Confidence            88899999999999999999999999999999999998888899999999999999999766778899999999999997


Q ss_pred             CCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHH
Q 014945          230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN  309 (415)
Q Consensus       230 ~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~n  309 (415)
                      ...........++++.+..++.+++..++..+++++.+++......   ....|+++.|+.++.+++..++..++++|++
T Consensus       216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~---~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~  292 (529)
T d1jdha_         216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN  292 (529)
T ss_dssp             STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             cccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccch---hhhhhcchhhhhhcccccHHHHHHHHHHHHh
Confidence            6544444555789999999999999999999999999998655432   2234788999999999999999999999999


Q ss_pred             hhcCChHHHHHHHHCCChHHHHHHhcC-CCccchHHHHHHHHHHHhcCC---HHHHHHHHHcCCHHHHHHHhccCC-HHH
Q 014945          310 IVTGDDMQTQCIINHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAGN---VNQIQAIIEAGIIGPLVNLLLNAE-FEI  384 (415)
Q Consensus       310 l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~v~~~a~~~l~nl~~~~---~~~~~~l~~~~~i~~L~~~l~~~~-~~v  384 (415)
                      ++.+++.....+.+.++++.++..+.. +..+.++..+++++.|++.+.   ......+...|.++.++.++..++ ..+
T Consensus       293 l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~  372 (529)
T d1jdha_         293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL  372 (529)
T ss_dssp             HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred             hccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHH
Confidence            999988888888899999999998843 225678999999999999742   233445567899999999998744 578


Q ss_pred             HHHHHHHHHHHhCCC
Q 014945          385 KKEAAWAISNATSGG  399 (415)
Q Consensus       385 ~~~a~~aL~nl~~~~  399 (415)
                      +..+++++.|++...
T Consensus       373 ~~~~~~~l~~l~~~~  387 (529)
T d1jdha_         373 IKATVGLIRNLALCP  387 (529)
T ss_dssp             HHHHHHHHHHHTTSG
T ss_pred             HHHHHHHHhhcchhh
Confidence            899999999998753

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=9.2e-25  Score=204.86  Aligned_cols=322  Identities=19%  Similarity=0.214  Sum_probs=245.4

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (415)
Q Consensus        72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  151 (415)
                      .+|.|+++|++++++++..|+.+|.++...+ .+....+.+.|++|.|+++|++++ ++++..|+++|.+++.++++.+.
T Consensus         3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~a~~aL~~L~~~~~~~~~   80 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCcHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCCHHHHH
Confidence            6899999999999999999999999996543 677888999999999999999988 99999999999999988899999


Q ss_pred             HHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHh---------------ccchhHh
Q 014945          152 VVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF---------------NEHAKLS  215 (415)
Q Consensus       152 ~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l---------------~~~~~~~  215 (415)
                      .+.+.|+++.++.++.+ .++.++..++++|.+++.+... +...... +++.++..+               ....+..
T Consensus        81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (457)
T d1xm9a1          81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL-KEELIAD-ALPVLADRVIIPFSGWCDGNSNMSREVVDPE  158 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSST-HHHHHHH-HHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred             HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhh-HHHHHhc-ccHHHHHHHHhhhhhhhcchhhhhcccccHH
Confidence            99999999999998865 6788999999999999987653 3333333 333333332               1222445


Q ss_pred             HHHHHHHHHHHhhhCCCCCchh----------------------------------------------------------
Q 014945          216 MLRNATWTLSNFCRGKPQPLFE----------------------------------------------------------  237 (415)
Q Consensus       216 ~~~~a~~~l~~l~~~~~~~~~~----------------------------------------------------------  237 (415)
                      ++..+++++.+++.........                                                          
T Consensus       159 v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  238 (457)
T d1xm9a1         159 VFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR  238 (457)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhh
Confidence            5666666655544321100000                                                          


Q ss_pred             -----------------------------------------hhhchHHHHHHhhcC-CChhHHHHHHHHHHHhccCChH-
Q 014945          238 -----------------------------------------QTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTND-  274 (415)
Q Consensus       238 -----------------------------------------~~~~~l~~l~~lL~~-~d~~v~~~a~~~l~~l~~~~~~-  274 (415)
                                                               ...+.++.++.++.. .++.+...+.+++.+++..... 
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~  318 (457)
T d1xm9a1         239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM  318 (457)
T ss_dssp             ---------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSH
T ss_pred             hhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccc
Confidence                                                     001233444444433 4567778888888888755432 


Q ss_pred             ----HHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCC-----CccchHHH
Q 014945          275 ----KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-----YKKSIKKE  345 (415)
Q Consensus       275 ----~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~-----~~~~v~~~  345 (415)
                          ....+.+.|+++.|+.++.++++.++..+++++++++.... .... +..++++.++.++...     .++.++..
T Consensus       319 ~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~-~~~~-i~~~~i~~li~~L~~~~~~~~~~~~v~~~  396 (457)
T d1xm9a1         319 SSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL-LHRV-MGNQVFPEVTRLLTSHTGNTSNSEDILSS  396 (457)
T ss_dssp             HHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG-GHHH-HHHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred             hHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChh-HHHH-HHHhhHHHHHHHHhccccCcCCcHHHHHH
Confidence                12334456899999999999999999999999999997644 4443 4457889999988643     13468999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHHHHHHHHHhCCC
Q 014945          346 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNATSGG  399 (415)
Q Consensus       346 a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~-~~~~v~~~a~~aL~nl~~~~  399 (415)
                      ++++|.|++.++++..+.+.+.|+++.|+.++.+ +++.+++.|+++|++++.+.
T Consensus       397 a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~  451 (457)
T d1xm9a1         397 ACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK  451 (457)
T ss_dssp             HHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred             HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCH
Confidence            9999999999889999999999999999999986 46889999999999998653

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.5e-23  Score=196.48  Aligned_cols=288  Identities=17%  Similarity=0.212  Sum_probs=220.8

Q ss_pred             CchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHH
Q 014945          114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD  193 (415)
Q Consensus       114 g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~  193 (415)
                      +.+|.|+++|++++ ++++..|+++|++++.++++.+..+.+.|++|.|+++|.+++++++..|+++|+||+.+++..+.
T Consensus         2 ~~ip~lv~~L~~~~-~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~   80 (457)
T d1xm9a1           2 LTIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CCHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CCHHHHHHHhCCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            46899999999999 99999999999999999899999999999999999999999999999999999999999888999


Q ss_pred             HHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhh----------------cCCChhH
Q 014945          194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI----------------HSNDDEV  257 (415)
Q Consensus       194 ~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL----------------~~~d~~v  257 (415)
                      .+.+.|+++.++.++....+..++..+++++.+++..... ........++.+...+                ...+..+
T Consensus        81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v  159 (457)
T d1xm9a1          81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL-KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV  159 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSST-HHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred             HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhh-HHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHH
Confidence            9999999999999997777889999999999999987533 2333334444443332                3457888


Q ss_pred             HHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcC--------------------------------------------
Q 014945          258 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR--------------------------------------------  293 (415)
Q Consensus       258 ~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~--------------------------------------------  293 (415)
                      +..+++++.+++..++.....+...|+++.++.++.                                            
T Consensus       160 ~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  239 (457)
T d1xm9a1         160 FFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN  239 (457)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhh
Confidence            999999998887665544333333344444443321                                            


Q ss_pred             -------------------------------------------------------CCChhhHHHHHHHHHHhhcCChH--
Q 014945          294 -------------------------------------------------------HPSPSVLIPALRTVGNIVTGDDM--  316 (415)
Q Consensus       294 -------------------------------------------------------~~~~~v~~~a~~~l~nl~~~~~~--  316 (415)
                                                                             ..++.+...+.+++.+++.....  
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~  319 (457)
T d1xm9a1         240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS  319 (457)
T ss_dssp             --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred             hhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccch
Confidence                                                                   11223455667777777654431  


Q ss_pred             ---HHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc------CCHHHHHH
Q 014945          317 ---QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN------AEFEIKKE  387 (415)
Q Consensus       317 ---~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~------~~~~v~~~  387 (415)
                         ....+.+.|+++.|+.++.++ ++.++..++++++|++.. ++... .+..++++.++.++..      .+.+++..
T Consensus       320 ~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~l~~La~~-~~~~~-~i~~~~i~~li~~L~~~~~~~~~~~~v~~~  396 (457)
T d1xm9a1         320 SGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRH-PLLHR-VMGNQVFPEVTRLLTSHTGNTSNSEDILSS  396 (457)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTS-GGGHH-HHHHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHhhhcCc-cHHHHHHHHHHHHHHhhC-hhHHH-HHHHhhHHHHHHHHhccccCcCCcHHHHHH
Confidence               223344679999999999999 999999999999999975 33333 3445689999999864      23579999


Q ss_pred             HHHHHHHHhCCCCHHHHHHH
Q 014945          388 AAWAISNATSGGSNEQIKYK  407 (415)
Q Consensus       388 a~~aL~nl~~~~~~~~~~~l  407 (415)
                      |+.+|.|++... ++..+.+
T Consensus       397 a~~~L~~l~~~~-~~~~~~l  415 (457)
T d1xm9a1         397 ACYTVRNLMASQ-PQLAKQY  415 (457)
T ss_dssp             HHHHHHHHHTTC-THHHHHH
T ss_pred             HHHHHHHHhcCC-HHHHHHH
Confidence            999999999764 3444444

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3e-21  Score=168.31  Aligned_cols=195  Identities=17%  Similarity=0.182  Sum_probs=174.6

Q ss_pred             hHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHH
Q 014945          129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQ  207 (415)
Q Consensus       129 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~  207 (415)
                      .+.+..|+.+|.+++.+ .++...+...|+++.++. ++.+++++++..|+++|++++.+++.++..+.+.|+++.|+.+
T Consensus        31 ~~~~~~Al~~L~~L~~~-~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~l  109 (264)
T d1xqra1          31 QQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  109 (264)
T ss_dssp             HHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcC-HHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence            68899999999999974 778888999999999886 7888999999999999999999999999999999999999999


Q ss_pred             hccchhHhHHHHHHHHHHHhhhCCCC-CchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHH
Q 014945          208 FNEHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCP  286 (415)
Q Consensus       208 l~~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~  286 (415)
                      +.+..++.++..++|++++++.+.+. .......++++.|+.++.++++.++..++++|.+++..+++....+.+.|+++
T Consensus       110 L~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~  189 (264)
T d1xqra1         110 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ  189 (264)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred             hhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHH
Confidence            96677888999999999999988643 33445578999999999999999999999999999988887888899999999


Q ss_pred             HHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHC
Q 014945          287 RLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH  324 (415)
Q Consensus       287 ~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~  324 (415)
                      .|+.+|.++++.++..++++|++++...+.........
T Consensus       190 ~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~  227 (264)
T d1xqra1         190 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREP  227 (264)
T ss_dssp             HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCG
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence            99999999999999999999999999888776655543

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=5.1e-19  Score=153.96  Aligned_cols=198  Identities=12%  Similarity=0.122  Sum_probs=174.1

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCch-hhhhchHHHH
Q 014945          168 SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF-EQTRPALPAL  246 (415)
Q Consensus       168 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~-~~~~~~l~~l  246 (415)
                      +.+.+.+..|+.+|.+++.+.+ .+..+...|++++++..+..+++.+++..++++|++++.+.+.... ....+++|.|
T Consensus        28 ~~~~~~~~~Al~~L~~L~~~~d-~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L  106 (264)
T d1xqra1          28 AADQQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL  106 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCHH-HHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence            3467788999999999996544 6777889999999998655788999999999999999987643333 3347899999


Q ss_pred             HHhhc-CCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCC
Q 014945          247 ERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQ  325 (415)
Q Consensus       247 ~~lL~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~  325 (415)
                      +.++. ..++.++..+++++++++.+.+.....+...|+++.|+.+|.+++..++..++++|++++.+.+.....+.+.|
T Consensus       107 v~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  186 (264)
T d1xqra1         107 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMG  186 (264)
T ss_dssp             HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTT
T ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhh
Confidence            99996 46788999999999999999888888899999999999999999999999999999999998888889999999


Q ss_pred             ChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHc
Q 014945          326 ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEA  367 (415)
Q Consensus       326 ~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~  367 (415)
                      +++.|+.++.++ ++.++..|+|+|++++.+++.........
T Consensus       187 ~v~~L~~lL~~~-~~~~~~~a~~aL~~L~~~~~~~~~~~~~~  227 (264)
T d1xqra1         187 MVQQLVALVRTE-HSPFHEHVLGALCSLVTDFPQGVRECREP  227 (264)
T ss_dssp             HHHHHHHHHTSC-CSTHHHHHHHHHHHHHTTCHHHHHHHHCG
T ss_pred             hHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence            999999999998 99999999999999999888887776643

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=3.7e-14  Score=137.26  Aligned_cols=305  Identities=13%  Similarity=0.092  Sum_probs=222.7

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (415)
Q Consensus        72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  151 (415)
                      .++.+...+++++++++..|+..+..+...-.........-..++|.+...+++.+ +.++..++.++..++..-.  ..
T Consensus       282 l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~-~~vr~~~~~~l~~~~~~~~--~~  358 (588)
T d1b3ua_         282 LVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDAN-QHVKSALASVIMGLSPILG--KD  358 (588)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSC-HHHHHHHHTTGGGGHHHHC--HH
T ss_pred             hhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcCCC-hHHHHHHHHHHhhhhhccc--hh
Confidence            35667777888888889888888887765432222233334567888999999888 8999999888877664211  11


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC
Q 014945          152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK  231 (415)
Q Consensus       152 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~  231 (415)
                      .. ....+|.+..++.+++++++..++.+++.+...-..  ..+ ....++.+...+ .+.+..++..++.++..++...
T Consensus       359 ~~-~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~--~~~-~~~ll~~l~~~~-~d~~~~~r~~~~~~l~~l~~~~  433 (588)
T d1b3ua_         359 NT-IEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI--RQL-SQSLLPAIVELA-EDAKWRVRLAIIEYMPLLAGQL  433 (588)
T ss_dssp             HH-HHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH--HHH-HHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcch--hhh-hhHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHHc
Confidence            11 224689999999999999999999888877642211  111 122566777777 6778889999999999887642


Q ss_pred             CCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhh
Q 014945          232 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV  311 (415)
Q Consensus       232 ~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~  311 (415)
                      ..  ......+.|.+..++.++...|+..|+++++.++......   .....+++.+..++.++++.+|..++.+++.+.
T Consensus       434 ~~--~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~---~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~  508 (588)
T d1b3ua_         434 GV--EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE---WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLS  508 (588)
T ss_dssp             CG--GGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH---HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHH
T ss_pred             Ch--HhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCcH---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            11  1223456778888999999999999999999997532211   123457899999999999999999999999987


Q ss_pred             cCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHH
Q 014945          312 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAW  390 (415)
Q Consensus       312 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~  390 (415)
                      ...+.   ......++|.+.+++.++ .+.||..+++++..+... .+..    +...+.|.+..+++++|.+||..|.+
T Consensus       509 ~~~~~---~~~~~~ilp~ll~~~~D~-v~nVR~~a~~~l~~i~~~~~~~~----~~~~i~~~l~~L~~D~d~dVr~~A~~  580 (588)
T d1b3ua_         509 EVCGQ---DITTKHMLPTVLRMAGDP-VANVRFNVAKSLQKIGPILDNST----LQSEVKPILEKLTQDQDVDVKYFAQE  580 (588)
T ss_dssp             HHHHH---HHHHHHTHHHHHHGGGCS-CHHHHHHHHHHHHHHGGGSCHHH----HHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred             HHcCh---HHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHcCcHh----HHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            64331   233446899999999998 999999999999999873 3322    22335677888888999999999999


Q ss_pred             HHHHHhC
Q 014945          391 AISNATS  397 (415)
Q Consensus       391 aL~nl~~  397 (415)
                      |+..++-
T Consensus       581 al~~l~~  587 (588)
T d1b3ua_         581 ALTVLSL  587 (588)
T ss_dssp             HHHHTTC
T ss_pred             HHHHHhc
Confidence            9998764

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.1e-13  Score=133.93  Aligned_cols=308  Identities=12%  Similarity=0.098  Sum_probs=222.7

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCc-hhhH
Q 014945           73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS-ENTR  151 (415)
Q Consensus        73 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~-~~~~  151 (415)
                      +|.+.+.+++.++.++..++..|..+...-    ........++|.+..++++.+ ++++..|++.++.++..-. ....
T Consensus       244 ~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~----~~~~~~~~l~~~l~~ll~d~~-~~vr~~a~~~l~~~~~~l~~~~~~  318 (588)
T d1b3ua_         244 MPTLRQAAEDKSWRVRYMVADKFTELQKAV----GPEITKTDLVPAFQNLMKDCE-AEVRAAASHKVKEFCENLSADCRE  318 (588)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHTHHHHHHHH----CHHHHHHTHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHTSCTTTHH
T ss_pred             HHHHHHhcccccHHHHHHHHHhHHHHHHHh----hhhhhhhhhhHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhhhh
Confidence            455666666677777777777777765321    122334457889999999888 8999999999988876422 2223


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC
Q 014945          152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK  231 (415)
Q Consensus       152 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~  231 (415)
                      ...-..+++.+...+.+.++.++..++.++..++..-.   ........++.+...+ .+.+..++..+..++..+....
T Consensus       319 ~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~---~~~~~~~l~p~l~~~l-~d~~~~v~~~~~~~l~~~~~~~  394 (588)
T d1b3ua_         319 NVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG---KDNTIEHLLPLFLAQL-KDECPEVRLNIISNLDCVNEVI  394 (588)
T ss_dssp             HHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC---HHHHHHHTHHHHHHHH-TCSCHHHHHHHHTTCHHHHHHS
T ss_pred             hhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccc---hhHHHHHHHHHHHHHH-HhhhhhhhhHHHHHHHHHHhhc
Confidence            33334678899999999999999999998888763211   1111223677888888 6778889998888888776542


Q ss_pred             CCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhh
Q 014945          232 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV  311 (415)
Q Consensus       232 ~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~  311 (415)
                        ........++|.+..++.+.++.++..++.++..++......   .....+.+.+..++.++...+|..|+++++.++
T Consensus       395 --~~~~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~  469 (588)
T d1b3ua_         395 --GIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLV  469 (588)
T ss_dssp             --CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG---GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred             --chhhhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcChH---hHHHHHHHHHHhhccCCchhHHHHHHHHHHHHH
Confidence              122334677889999999999999999999998886421110   112235677888899999999999999999998


Q ss_pred             cCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHH
Q 014945          312 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWA  391 (415)
Q Consensus       312 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~a  391 (415)
                      ......   .....+++.+..++.++ ++..|..++.+++.+....+.   ......++|.+.+++.++.+.||..++++
T Consensus       470 ~~~~~~---~~~~~i~~~l~~~~~~~-~~~~R~~~~~~l~~l~~~~~~---~~~~~~ilp~ll~~~~D~v~nVR~~a~~~  542 (588)
T d1b3ua_         470 EKFGKE---WAHATIIPKVLAMSGDP-NYLHRMTTLFCINVLSEVCGQ---DITTKHMLPTVLRMAGDPVANVRFNVAKS  542 (588)
T ss_dssp             HHHCHH---HHHHHTHHHHHHTTTCS-CHHHHHHHHHHHHHHHHHHHH---HHHHHHTHHHHHHGGGCSCHHHHHHHHHH
T ss_pred             HHhCcH---HHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHcCh---HHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            632211   12335788899999888 999999999999988763222   22344589999999999999999999999


Q ss_pred             HHHHhCCCCH
Q 014945          392 ISNATSGGSN  401 (415)
Q Consensus       392 L~nl~~~~~~  401 (415)
                      |..+....+.
T Consensus       543 l~~i~~~~~~  552 (588)
T d1b3ua_         543 LQKIGPILDN  552 (588)
T ss_dssp             HHHHGGGSCH
T ss_pred             HHHHHHHcCc
Confidence            9999865554

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=2.6e-11  Score=104.84  Aligned_cols=253  Identities=15%  Similarity=0.134  Sum_probs=190.0

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (415)
Q Consensus        72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  151 (415)
                      ..+.|++.|+++|+.++..|+..|..+-.            ...++.|++++++++ +.++..|+++|+.+....... .
T Consensus        20 ~~~~L~~~L~d~~~~vR~~A~~~L~~~~~------------~~~~~~l~~~l~d~~-~~vr~~a~~aL~~l~~~~~~~-~   85 (276)
T d1oyza_          20 NDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICKKCE-D   85 (276)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCTTTH-H
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHhhCC------------HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhccccccc-c
Confidence            56789999999999999999999988631            125799999999998 999999999999987542221 1


Q ss_pred             HHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhC
Q 014945          152 VVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  230 (415)
Q Consensus       152 ~~~~~g~i~~L~~-ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~  230 (415)
                      .     .++.+.. +++++++.++..++.+|++++...+.....     .++.+...+ .+.++.++..++.++..... 
T Consensus        86 ~-----~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~-----~~~~l~~~~-~d~~~~vr~~a~~~l~~~~~-  153 (276)
T d1oyza_          86 N-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPK-----IVEQSQITA-FDKSTNVRRATAFAISVIND-  153 (276)
T ss_dssp             H-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHHT-TCSCHHHHHHHHHHHHTC---
T ss_pred             c-----hHHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhHH-----HHHHHHHHh-cCcchHHHHHHHHHHhhcch-
Confidence            1     1333343 567889999999999999998655432222     345666666 66778888888888776542 


Q ss_pred             CCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHh
Q 014945          231 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI  310 (415)
Q Consensus       231 ~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl  310 (415)
                               ...++.+..++...+..++..+..++.........         ..+.+...+.+.+..++..+..+++.+
T Consensus       154 ---------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~al~~~  215 (276)
T d1oyza_         154 ---------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDKNEEVRIEAIIGLSYR  215 (276)
T ss_dssp             ----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred             ---------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccc---------cchhhhhhhhhhhhhhhhhhccccchh
Confidence                     24567788888889999999998888887665543         235567778888999999999998876


Q ss_pred             hcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHHH
Q 014945          311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAA  389 (415)
Q Consensus       311 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~-~~~~v~~~a~  389 (415)
                      ..           ...++.|+..+.++   .+|..++++|+.+..  +         +.++.|..++.+ ++.+++..|+
T Consensus       216 ~~-----------~~~~~~L~~~l~d~---~vr~~a~~aL~~ig~--~---------~~~~~L~~~l~~~~d~~vr~~A~  270 (276)
T d1oyza_         216 KD-----------KRVLSVLCDELKKN---TVYDDIIEAAGELGD--K---------TLLPVLDTMLYKFDDNEIITSAI  270 (276)
T ss_dssp             TC-----------GGGHHHHHHHHTSS---SCCHHHHHHHHHHCC--G---------GGHHHHHHHHTTSSCCHHHHHHH
T ss_pred             hh-----------hhhHHHHHHHhCCh---HHHHHHHHHHHHcCC--H---------HHHHHHHHHHccCCCHHHHHHHH
Confidence            42           24578888888654   689999999998852  2         378888888876 5789999999


Q ss_pred             HHHH
Q 014945          390 WAIS  393 (415)
Q Consensus       390 ~aL~  393 (415)
                      .+|.
T Consensus       271 ~~L~  274 (276)
T d1oyza_         271 DKLK  274 (276)
T ss_dssp             HHHT
T ss_pred             HHHc
Confidence            8874

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2.3e-13  Score=138.09  Aligned_cols=317  Identities=14%  Similarity=0.171  Sum_probs=192.0

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCc-hhhHH
Q 014945           74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS-ENTRV  152 (415)
Q Consensus        74 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~-~~~~~  152 (415)
                      +.+.+.+.++++..+..|+.++..++.+. .+.....+ ..+++.++..+++++ +.+|..|+|+|+.++.... .....
T Consensus       398 ~~l~~~l~s~~~~~reaa~~alg~i~eg~-~~~~~~~l-~~li~~l~~~l~d~~-~~Vr~~a~~~l~~~~~~~~~~~~~~  474 (888)
T d1qbkb_         398 PLLKELLFHHEWVVKESGILVLGAIAEGC-MQGMIPYL-PELIPHLIQCLSDKK-ALVRSITCWTLSRYAHWVVSQPPDT  474 (888)
T ss_dssp             HHHHHTTTSSSHHHHHHHHHHHHHHTTTS-HHHHTTTH-HHHHHHHHHHTTSSC-HHHHHHHHHHHHHTHHHHHSSCHHH
T ss_pred             HHHHHhhccchhHHHHHHHHHhhhhhhhH-HHHhcccc-hhhhHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            44556677889999999999998876432 11111111 236788999999988 9999999999998875211 11222


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCc-hhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhh--
Q 014945          153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP-KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR--  229 (415)
Q Consensus       153 ~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~--  229 (415)
                      . -..+++.++..+.++++.+++.|+++|.+++.... .....+  ..+++.++..+. ..+......+..++..++.  
T Consensus       475 ~-~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~--~~il~~l~~~l~-~~~~~~~~~~~~al~~l~~~~  550 (888)
T d1qbkb_         475 Y-LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAFS-KYQHKNLLILYDAIGTLADSV  550 (888)
T ss_dssp             H-TTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGH--HHHHHHHHHHTT-TCCHHHHHHHHHHHHHHHHHH
T ss_pred             h-hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHH--HHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHhh
Confidence            2 23678889999999999999999999999973211 111111  113344444442 2122222222222222221  


Q ss_pred             -------------------------------------------CCCCCchhhhhchHHHHHHhh----------------
Q 014945          230 -------------------------------------------GKPQPLFEQTRPALPALERLI----------------  250 (415)
Q Consensus       230 -------------------------------------------~~~~~~~~~~~~~l~~l~~lL----------------  250 (415)
                                                                 ..............+.+...+                
T Consensus       551 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  630 (888)
T d1qbkb_         551 GHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQ  630 (888)
T ss_dssp             GGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTT
T ss_pred             hccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence                                                       100000000011111111111                


Q ss_pred             -cCCChhHHHHHHHHHHHhccCChHHH-HHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChH
Q 014945          251 -HSNDDEVLTDACWALSYLSDGTNDKI-QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALP  328 (415)
Q Consensus       251 -~~~d~~v~~~a~~~l~~l~~~~~~~~-~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~  328 (415)
                       ...+.++...++.++..++..-.... ..+....+++.+...+.+.++.++..|+.++|.++..........++ .+++
T Consensus       631 ~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~-~~~~  709 (888)
T d1qbkb_         631 YEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA-DFMP  709 (888)
T ss_dssp             SCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHH
T ss_pred             ccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHH
Confidence             11234445555555555543222111 22233457788888889999999999999999998765544332333 3677


Q ss_pred             HHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCC--HHHHHHHHHHHHHHhCCCC
Q 014945          329 CLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAE--FEIKKEAAWAISNATSGGS  400 (415)
Q Consensus       329 ~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~--~~v~~~a~~aL~nl~~~~~  400 (415)
                      .+...+.++ .+.++..|+|+++.|+....+.....++. +++.|+.++.+++  ..++..++.+|+.++...+
T Consensus       710 ~l~~~L~~~-~~~v~~~a~~~ig~ia~~~~~~~~py~~~-il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p  781 (888)
T d1qbkb_         710 ILGTNLNPE-FISVCNNATWAIGEISIQMGIEMQPYIPM-VLHQLVEIINRPNTPKTLLENTAITIGRLGYVCP  781 (888)
T ss_dssp             HHHHTCCGG-GHHHHHHHHHHHHHHHHHTGGGGGGGSHH-HHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHhCcC-CHHHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCH
Confidence            788888887 88999999999999987433444444443 7889999998754  4588999999999987644

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=7.1e-12  Score=131.02  Aligned_cols=272  Identities=14%  Similarity=0.145  Sum_probs=193.9

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (415)
Q Consensus        72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  151 (415)
                      .+..+++.+++.|++.|+.|+..|.+.+... ....+.-....+++.|+++|++++ +++|..|+.||+.++..-++...
T Consensus         4 ~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~-~~~~~~~~~~~i~~~ll~~L~D~~-~~Vq~~A~k~l~~l~~~~~~~~~   81 (1207)
T d1u6gc_           4 HISNLLEKMTSSDKDFRFMATNDLMTELQKD-SIKLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEYQV   81 (1207)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSS-CCSCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             hHHHHHHhcCCCCHhHHHHHHHHHHHHHhhc-ccccChHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCcHhhH
Confidence            4678899999999999999999999887644 222222223347899999999988 99999999999999876444321


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCc------hhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHH
Q 014945          152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP------KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS  225 (415)
Q Consensus       152 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~------~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~  225 (415)
                          ..+++.|+..+.+++...+..+..+|..+...-+      ..... .....++.+...+.+..+..++..++.++.
T Consensus        82 ----~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~v~~~al~~l~  156 (1207)
T d1u6gc_          82 ----ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAAN-VCKKITGRLTSAIAKQEDVSVQLEALDIMA  156 (1207)
T ss_dssp             ----HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHH-HHHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHH-HHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence                1357888888888888888888888877653211      11111 111244555555555667788899999999


Q ss_pred             HhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcC-CCChhhHHHHH
Q 014945          226 NFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPAL  304 (415)
Q Consensus       226 ~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~  304 (415)
                      .+....+..-......+++.++..+.+++..++..|+.+++.++...+...   + ..+++.++..+. +.+...+..++
T Consensus       157 ~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~---~-~~~~~~ll~~l~~~~~~~~~~~~~  232 (1207)
T d1u6gc_         157 DMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV---F-VDLIEHLLSELSKNDSMSTTRTYI  232 (1207)
T ss_dssp             HHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHH
T ss_pred             HHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHH---H-HHHHHHHHHHHccCCCHHHHHHHH
Confidence            888766544444456788899999999999999999999999986654321   1 234566666553 45566777788


Q ss_pred             HHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcC
Q 014945          305 RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG  356 (415)
Q Consensus       305 ~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~  356 (415)
                      .+++.++...+...... -..+++.+...+.+. ++.+|..+..++..++..
T Consensus       233 ~~l~~l~~~~~~~~~~~-l~~i~~~l~~~l~~~-~~~~r~~al~~l~~l~~~  282 (1207)
T d1u6gc_         233 QCIAAISRQAGHRIGEY-LEKIIPLVVKFCNVD-DDELREYCIQAFESFVRR  282 (1207)
T ss_dssp             HHHHHHHHHSSGGGTTS-CTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcchhhHHH-HHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHh
Confidence            88998886554322111 136788999999998 999999999999988764

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=8.7e-11  Score=101.47  Aligned_cols=229  Identities=14%  Similarity=0.144  Sum_probs=176.8

Q ss_pred             cCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhH
Q 014945          113 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR  192 (415)
Q Consensus       113 ~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~  192 (415)
                      ....+.|+++|++++ +.+|..|+.+|+.+..  +         .+++.|+.+++++++.++..|+++|+.+...... .
T Consensus        18 ~~~~~~L~~~L~d~~-~~vR~~A~~~L~~~~~--~---------~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~-~   84 (276)
T d1oyza_          18 KLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC-E   84 (276)
T ss_dssp             TSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT-H
T ss_pred             cCCHHHHHHHhcCCC-HHHHHHHHHHHHhhCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc-c
Confidence            345678999999998 9999999999998753  1         3589999999999999999999999999754432 1


Q ss_pred             HHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 014945          193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT  272 (415)
Q Consensus       193 ~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~  272 (415)
                      +.     .++.+...+.++.++.++..++.++..++...+    ......++.+...+.+.++.++..++.+++....  
T Consensus        85 ~~-----~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~--  153 (276)
T d1oyza_          85 DN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--  153 (276)
T ss_dssp             HH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----
T ss_pred             cc-----hHHHHHHHHhcCCChhHHHHHHHHHHHHccccc----hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcch--
Confidence            22     234556655578899999999999999986532    2224567788888888999999999888876542  


Q ss_pred             hHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHH
Q 014945          273 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN  352 (415)
Q Consensus       273 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~n  352 (415)
                               ...++.+..++.+.++.++..+..+++.+......         ..+.+...+.+. +..++..+.++++.
T Consensus       154 ---------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~al~~  214 (276)
T d1oyza_         154 ---------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDK-NEEVRIEAIIGLSY  214 (276)
T ss_dssp             ----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCS-CHHHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccc---------cchhhhhhhhhh-hhhhhhhhccccch
Confidence                     34567888888889999999999999888776553         344567777787 89999999999987


Q ss_pred             HhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhC
Q 014945          353 ITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  397 (415)
Q Consensus       353 l~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~  397 (415)
                      +..           ...++.|++.+.+  +.++..|+++|+.+..
T Consensus       215 ~~~-----------~~~~~~L~~~l~d--~~vr~~a~~aL~~ig~  246 (276)
T d1oyza_         215 RKD-----------KRVLSVLCDELKK--NTVYDDIIEAAGELGD  246 (276)
T ss_dssp             TTC-----------GGGHHHHHHHHTS--SSCCHHHHHHHHHHCC
T ss_pred             hhh-----------hhhHHHHHHHhCC--hHHHHHHHHHHHHcCC
Confidence            642           2367788888874  4588999999999863

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=4.8e-12  Score=128.29  Aligned_cols=279  Identities=16%  Similarity=0.200  Sum_probs=181.4

Q ss_pred             hHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCc-hhHHH
Q 014945          116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP-KCRDL  194 (415)
Q Consensus       116 i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~-~~~~~  194 (415)
                      ++.+.+.+.+++ +..|..|+.+|+.++.+..+.....+. .+++.++..+.++++.++..++|+|+.++.... ...+.
T Consensus       397 l~~l~~~l~s~~-~~~reaa~~alg~i~eg~~~~~~~~l~-~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~  474 (888)
T d1qbkb_         397 LPLLKELLFHHE-WVVKESGILVLGAIAEGCMQGMIPYLP-ELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDT  474 (888)
T ss_dssp             HHHHHHTTTSSS-HHHHHHHHHHHHHHTTTSHHHHTTTHH-HHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHH
T ss_pred             HHHHHHhhccch-hHHHHHHHHHhhhhhhhHHHHhcccch-hhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            456666777777 899999999999999875443322222 467889999999999999999999999874221 11122


Q ss_pred             HHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC---
Q 014945          195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG---  271 (415)
Q Consensus       195 ~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~---  271 (415)
                       .-...++.++..+ .+.++.++..+++++.+++.............+++.+...+...+......+..+++.++..   
T Consensus       475 -~~~~~l~~ll~~l-~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~  552 (888)
T d1qbkb_         475 -YLKPLMTELLKRI-LDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGH  552 (888)
T ss_dssp             -HTTTHHHHHHHHH-SSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGG
T ss_pred             -hhhhhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhc
Confidence             2234677788887 66788999999999999997654444445566777777777766655544444444443311   


Q ss_pred             ---ChHHHHHHH-------------------------------HcCc-------HHHHHHhc-----------------C
Q 014945          272 ---TNDKIQAVI-------------------------------EAGV-------CPRLVELL-----------------R  293 (415)
Q Consensus       272 ---~~~~~~~~~-------------------------------~~~~-------i~~L~~lL-----------------~  293 (415)
                         .+...+.+.                               ..++       ++.++..+                 .
T Consensus       553 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  632 (888)
T d1qbkb_         553 HLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYE  632 (888)
T ss_dssp             GGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSC
T ss_pred             cccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence               111111100                               0000       01111111                 1


Q ss_pred             CCChhhHHHHHHHHHHhhcCChHHHHHHH-HCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHH
Q 014945          294 HPSPSVLIPALRTVGNIVTGDDMQTQCII-NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGP  372 (415)
Q Consensus       294 ~~~~~v~~~a~~~l~nl~~~~~~~~~~~~-~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~  372 (415)
                      ..+..+...++.+++.++.+-......++ ...+++.+...+++. ++.+|..|..+++.++...+......++. +++.
T Consensus       633 ~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~-~~~vr~~a~~llgdl~~~~~~~~~~~l~~-~~~~  710 (888)
T d1qbkb_         633 APDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDK-MPEVRQSSFALLGDLTKACFQHVKPCIAD-FMPI  710 (888)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCGGGTGGGHHH-HHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHHH
Confidence            12334455566666666543322222233 346778888888888 99999999999999987555545444444 7888


Q ss_pred             HHHHhccCCHHHHHHHHHHHHHHhCCCC
Q 014945          373 LVNLLLNAEFEIKKEAAWAISNATSGGS  400 (415)
Q Consensus       373 L~~~l~~~~~~v~~~a~~aL~nl~~~~~  400 (415)
                      +...+.++++.++..|+|+++.++...+
T Consensus       711 l~~~L~~~~~~v~~~a~~~ig~ia~~~~  738 (888)
T d1qbkb_         711 LGTNLNPEFISVCNNATWAIGEISIQMG  738 (888)
T ss_dssp             HHHTCCGGGHHHHHHHHHHHHHHHHHTG
T ss_pred             HHHHhCcCCHHHHHHHHHHHHHHHHHHH
Confidence            8888888889999999999999986543

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=2.9e-10  Score=105.25  Aligned_cols=276  Identities=18%  Similarity=0.214  Sum_probs=177.7

Q ss_pred             cHHHHHHhhcC--CCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCC-ChHHHHHHHHHHHHHhCCCch
Q 014945           72 SLPAMVAGVWS--DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSE  148 (415)
Q Consensus        72 ~i~~l~~~l~~--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~~i~~~a~~~L~~l~~~~~~  148 (415)
                      .++.+++.+.+  .++..+..++.++..+.... .+.........+++.++..+.+.+ +..++..|+.++..+......
T Consensus       128 ~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~  206 (458)
T d1ibrb_         128 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDI-DPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  206 (458)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS-CGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred             hhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhc-cchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhh
Confidence            46777777765  44566777777777765433 222211122345788888887643 268999999999998874333


Q ss_pred             hhH-HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHh
Q 014945          149 NTR-VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF  227 (415)
Q Consensus       149 ~~~-~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l  227 (415)
                      ... ........+.+..++.+++++++..++.+|..++...+..-...+. ..+..++.....+.+..++..++.++..+
T Consensus       207 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~a~~~l~~i  285 (458)
T d1ibrb_         207 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSDIDEVALQGIEFWSNV  285 (458)
T ss_dssp             HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTT-TTHHHHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            221 1222235677788888899999999999999998655432111111 13333333333666777888888888877


Q ss_pred             hhCC----------------C-CCc----hhhhhchHHHHHHhhcC-------CChhHHHHHHHHHHHhccCChHHHHHH
Q 014945          228 CRGK----------------P-QPL----FEQTRPALPALERLIHS-------NDDEVLTDACWALSYLSDGTNDKIQAV  279 (415)
Q Consensus       228 ~~~~----------------~-~~~----~~~~~~~l~~l~~lL~~-------~d~~v~~~a~~~l~~l~~~~~~~~~~~  279 (415)
                      +...                + ...    ........|.+...+.+       .+..++..+..++..++....+..   
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~---  362 (458)
T d1ibrb_         286 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI---  362 (458)
T ss_dssp             HHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTH---
T ss_pred             HHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhh---
Confidence            6321                0 000    01123445555555432       234578888888888775333221   


Q ss_pred             HHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh-HHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc
Q 014945          280 IEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD-MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA  355 (415)
Q Consensus       280 ~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~  355 (415)
                      . ..+++.+.+.+.++++.++..|+.+||.++.+.. ..... .-..+++.++..++++ ++.||..|+|+|+.++.
T Consensus       363 ~-~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~-~l~~i~~~l~~~l~d~-~~~VR~~a~~~l~~i~~  436 (458)
T d1ibrb_         363 V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDP-SVVVRDTAAWTVGRICE  436 (458)
T ss_dssp             H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT-TTTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred             h-hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHH-HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHH
Confidence            1 1356788888999999999999999999997542 22111 1236789999999999 99999999999999985

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=4.2e-10  Score=104.12  Aligned_cols=278  Identities=13%  Similarity=0.099  Sum_probs=180.7

Q ss_pred             CchHHHHHhhcCCC-ChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhcCCCch
Q 014945          114 GVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPK  190 (415)
Q Consensus       114 g~i~~L~~ll~~~~-~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~~L~nl~~~~~~  190 (415)
                      ++++.+++.+.++. +...+..++.++..++.........-.-..+++.++..+.+  .+..++..++.+++++....+.
T Consensus       127 ~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~  206 (458)
T d1ibrb_         127 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  206 (458)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred             chhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhh
Confidence            56788888887643 25677788888888775332221111112356778887765  4678999999999999865442


Q ss_pred             hHH-HHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhc-hHHHHHHhhcCCChhHHHHHHHHHHHh
Q 014945          191 CRD-LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRP-ALPALERLIHSNDDEVLTDACWALSYL  268 (415)
Q Consensus       191 ~~~-~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-~l~~l~~lL~~~d~~v~~~a~~~l~~l  268 (415)
                      ... ........+.+...+ .+.+++++..++.++..++...+..-...... ..+.+...+.+.+++++..++..+..+
T Consensus       207 ~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i  285 (458)
T d1ibrb_         207 NFDKESERHFIMQVVCEAT-QCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNV  285 (458)
T ss_dssp             HHTSHHHHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHhHhhHHHHh-cCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            211 111111334444555 67789999999999999987653322222223 344556667788899999999888877


Q ss_pred             ccCChHHH--------------------HHHHHcCcHHHHHHhcC-------CCChhhHHHHHHHHHHhhcCChHHHHHH
Q 014945          269 SDGTNDKI--------------------QAVIEAGVCPRLVELLR-------HPSPSVLIPALRTVGNIVTGDDMQTQCI  321 (415)
Q Consensus       269 ~~~~~~~~--------------------~~~~~~~~i~~L~~lL~-------~~~~~v~~~a~~~l~nl~~~~~~~~~~~  321 (415)
                      +.......                    .......+++.+...+.       +.++.++..+..+++.++...+...   
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~---  362 (458)
T d1ibrb_         286 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI---  362 (458)
T ss_dssp             HHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTH---
T ss_pred             HHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhh---
Confidence            53211110                    00111123445555543       2234678888888888876433221   


Q ss_pred             HHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCC-HHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945          322 INHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN-VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG  398 (415)
Q Consensus       322 ~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~-~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~  398 (415)
                      ++ .+++.+...++++ ++.+|..|+.+|+.++.+. ++.....+ ..+++.++..+.++++.||..|+|+|+.++..
T Consensus       363 ~~-~l~~~i~~~l~s~-~~~~r~aal~~l~~i~~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~  437 (458)
T d1ibrb_         363 VP-HVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL  437 (458)
T ss_dssp             HH-HHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             hh-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCHhHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            11 3567788888888 9999999999999998643 22222222 34789999999999999999999999999753

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=3.5e-10  Score=117.99  Aligned_cols=274  Identities=16%  Similarity=0.135  Sum_probs=182.4

Q ss_pred             hHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHH
Q 014945          116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLV  195 (415)
Q Consensus       116 i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~  195 (415)
                      +..|++-+.++| +++|+.|+.-|.+.........+.-....+++.|+++|.+++++|+..|+.+|+.++...+..  .+
T Consensus         5 ~~~ll~k~~~~D-~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~--~~   81 (1207)
T d1u6gc_           5 ISNLLEKMTSSD-KDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY--QV   81 (1207)
T ss_dssp             HHHHHHHTTCSS-HHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH--HH
T ss_pred             HHHHHHhcCCCC-HhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHh--hH
Confidence            456777788888 999999998888765422111111111136889999999999999999999999998765532  22


Q ss_pred             HhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCC------chhhhhchHHHHHHhhcC-CChhHHHHHHHHHHHh
Q 014945          196 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP------LFEQTRPALPALERLIHS-NDDEVLTDACWALSYL  268 (415)
Q Consensus       196 ~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~------~~~~~~~~l~~l~~lL~~-~d~~v~~~a~~~l~~l  268 (415)
                      .  ..++.|+..+ .+.+...+..+..++..+...-+..      .......+++.+...+.. .+..++..++.++..+
T Consensus        82 ~--~l~~~L~~~l-~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l  158 (1207)
T d1u6gc_          82 E--TIVDTLCTNM-LSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM  158 (1207)
T ss_dssp             H--HHHHHHHHHT-TCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred             H--HHHHHHHHHh-cCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Confidence            1  2566777766 4556666777776766665432111      112224445555555544 4678899999888887


Q ss_pred             ccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHH
Q 014945          269 SDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACW  348 (415)
Q Consensus       269 ~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~  348 (415)
                      ....+....... ..+++.++..+.++++.++..|+.+|+.++...+...    -..+++.++..+....+..++..++.
T Consensus       159 ~~~~g~~l~~~~-~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~----~~~~~~~ll~~l~~~~~~~~~~~~~~  233 (1207)
T d1u6gc_         159 LSRQGGLLVNFH-PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV----FVDLIEHLLSELSKNDSMSTTRTYIQ  233 (1207)
T ss_dssp             HHHTCSSCTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHH
T ss_pred             HHHhhHhhHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHH----HHHHHHHHHHHHccCCCHHHHHHHHH
Confidence            643221111111 2357888888999999999999999999987654221    12456677766644436778888899


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCH
Q 014945          349 TISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSN  401 (415)
Q Consensus       349 ~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~  401 (415)
                      +++.++...+......+ ..+++.+++.+.+++++++..++.++..++...+.
T Consensus       234 ~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~  285 (1207)
T d1u6gc_         234 CIAAISRQAGHRIGEYL-EKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK  285 (1207)
T ss_dssp             HHHHHHHHSSGGGTTSC-TTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHcchhhHHHH-HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChh
Confidence            99988864333222211 34789999999999999999999999999876653

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.01  E-value=4.1e-09  Score=105.28  Aligned_cols=319  Identities=14%  Similarity=0.174  Sum_probs=193.4

Q ss_pred             HHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhC
Q 014945           77 VAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDH  156 (415)
Q Consensus        77 ~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~  156 (415)
                      ...+.+.++..+..++..+..+.... ......-.-..+++.++..+.+++ +.++..++|+++.++...+.   .+...
T Consensus       375 ~~~~~~~~~~~~~~a~~~l~~i~~~~-~~~~~~~~l~~~l~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~---~~~~~  449 (861)
T d2bpta1         375 EQNITADNWRNREAAVMAFGSIMDGP-DKVQRTYYVHQALPSILNLMNDQS-LQVKETTAWCIGRIADSVAE---SIDPQ  449 (861)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHTSSSS-CHHHHHHHHHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGG---GSCTT
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHhcCcc-hhhhhHHHHHHHHHHHHhch---hhhhH
Confidence            34455788888888888888876433 222212222347889999999988 99999999999998763211   11112


Q ss_pred             CChHHHH----HhhCCCCHHHHHHHHHHHHHhcCC----Cc-hhHHHHHhcCChHHHHHHhc-cchhHhHHHHHHHHHHH
Q 014945          157 GAVPIFV----RLLSSPTDDVREQAVWALGNVAGD----SP-KCRDLVLSNGALMPLLAQFN-EHAKLSMLRNATWTLSN  226 (415)
Q Consensus       157 g~i~~L~----~ll~~~~~~v~~~a~~~L~nl~~~----~~-~~~~~~~~~g~i~~L~~~l~-~~~~~~~~~~a~~~l~~  226 (415)
                      ..++.++    ..+ ..++.+...+++++..++..    .. .......  ..+..++.... ...+..++..+..++..
T Consensus       450 ~~~~~ll~~l~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~al~~  526 (861)
T d2bpta1         450 QHLPGVVQACLIGL-QDHPKVATNCSWTIINLVEQLAEATPSPIYNFYP--ALVDGLIGAANRIDNEFNARASAFSALTT  526 (861)
T ss_dssp             TTHHHHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHH--HHHHHHHHHHTCSCCGGGHHHHHHHHHHH
T ss_pred             HhhhhhhHHHHhcc-ccChHHHHHHHHHHHHHHHHhhhcccchhhHHHh--hHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence            2333333    333 34677888888888877521    11 1111111  13444555443 23466788888889988


Q ss_pred             hhhCCCCCchhhhhchHHHHH----HhhcCCC-----------hhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHh
Q 014945          227 FCRGKPQPLFEQTRPALPALE----RLIHSND-----------DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL  291 (415)
Q Consensus       227 l~~~~~~~~~~~~~~~l~~l~----~lL~~~d-----------~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~l  291 (415)
                      +....+.........+.+.+.    ..+....           ..++..++.++..+............ ..+++.+...
T Consensus       527 ~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~-~~l~~~l~~~  605 (861)
T d2bpta1         527 MVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFRL  605 (861)
T ss_dssp             HHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHHHH-HHHHHHHhhh
Confidence            887654433333333333333    3332211           12344444455544432221111111 1245666666


Q ss_pred             cCC-CChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCH
Q 014945          292 LRH-PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGII  370 (415)
Q Consensus       292 L~~-~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i  370 (415)
                      +.. ++..++..++.+++.++..........++ .++|.+...+.+. ++.++..|+.+++.++...++......+. ++
T Consensus       606 l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~-~i~p~l~~~l~~~-~~~v~~~a~~~l~~i~~~~~~~~~~~~~~-i~  682 (861)
T d2bpta1         606 LEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYSDA-MM  682 (861)
T ss_dssp             HHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHHHH-HH
T ss_pred             cccCCchhHHHHHHHHHHHHHHHhhHHHHHHHH-HHhhHHHHHhCCC-CHHHHHHHHHHHHHHHHHhHHHhHhhHHH-HH
Confidence            644 45678889999999998754433333333 5788999999988 89999999999999987544444444443 78


Q ss_pred             HHHHHHhccC--CHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014945          371 GPLVNLLLNA--EFEIKKEAAWAISNATSGGSNEQIKYK  407 (415)
Q Consensus       371 ~~L~~~l~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l  407 (415)
                      +.|++.+.++  +..++..++.+|+.++........+|+
T Consensus       683 ~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~~~~~~l  721 (861)
T d2bpta1         683 NVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYL  721 (861)
T ss_dssp             HHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888764  467999999999999865444444443

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.9e-08  Score=100.67  Aligned_cols=317  Identities=17%  Similarity=0.210  Sum_probs=195.0

Q ss_pred             cHHHHHHhhcCCC--HHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCC-ChHHHHHHHHHHHHHhCCCch
Q 014945           72 SLPAMVAGVWSDD--RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSE  148 (415)
Q Consensus        72 ~i~~l~~~l~~~~--~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~~i~~~a~~~L~~l~~~~~~  148 (415)
                      -++.+++.+.+++  +..+..++.+|..+...-....... .-..+++.+++.+.+.+ +..++..++.++.+.......
T Consensus       129 li~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~-~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~  207 (876)
T d1qgra_         129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQD-KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  207 (876)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGG-GHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHH
T ss_pred             HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHH-HHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhh
Confidence            4577777776544  5677778888887754321111111 12346788888886543 268899999999887653222


Q ss_pred             hh-HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHh
Q 014945          149 NT-RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF  227 (415)
Q Consensus       149 ~~-~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l  227 (415)
                      .. ......-+++.+...+.++++.++..++.++..++...+..-...........+...+ .+.+..+...++..+..+
T Consensus       208 ~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~i  286 (876)
T d1qgra_         208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM-KSDIDEVALQGIEFWSNV  286 (876)
T ss_dssp             HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHH-TCSSHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHH
Confidence            11 1111122466777788889999999999999999865544322322222333344444 555666777777666666


Q ss_pred             hhCC----------------C-CCc----hhhhhchHHHHHHhhcCC-------ChhHHHHHHHHHHHhccCChHHHHHH
Q 014945          228 CRGK----------------P-QPL----FEQTRPALPALERLIHSN-------DDEVLTDACWALSYLSDGTNDKIQAV  279 (415)
Q Consensus       228 ~~~~----------------~-~~~----~~~~~~~l~~l~~lL~~~-------d~~v~~~a~~~l~~l~~~~~~~~~~~  279 (415)
                      +...                + ...    ......++|.+...+...       +..++..+..++..++......   +
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~---~  363 (876)
T d1qgra_         287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---I  363 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG---G
T ss_pred             HHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhh---h
Confidence            5321                0 000    111234455555554321       2347777777777766432221   1


Q ss_pred             HHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHH
Q 014945          280 IEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN  359 (415)
Q Consensus       280 ~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~  359 (415)
                      + ..+++.+...+.+.++..+..++..++.+..+.......-.-..+++.+...+.++ ++.++..++|+++.++...+.
T Consensus       364 ~-~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~  441 (876)
T d1qgra_         364 V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP-SVVVRDTAAWTVGRICELLPE  441 (876)
T ss_dssp             H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCGG
T ss_pred             h-hhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCC-ccHHHHHHHHHHHHHHHHcch
Confidence            1 12356677777889999999999999999876543332233336788999999998 999999999999999863222


Q ss_pred             HH--HHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhC
Q 014945          360 QI--QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  397 (415)
Q Consensus       360 ~~--~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~  397 (415)
                      ..  .... ..+++.+...+. +++.++..+++++.++..
T Consensus       442 ~~~~~~~~-~~~~~~l~~~l~-~~~~v~~~~~~~l~~l~~  479 (876)
T d1qgra_         442 AAINDVYL-APLLQCLIEGLS-AEPRVASNVCWAFSSLAE  479 (876)
T ss_dssp             GTSSTTTH-HHHHHHHHHHTT-SCHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHh-hhHHHHHHHHhc-CCHHHHHHHHHHHHHHHH
Confidence            11  0001 113455555554 578999999999999874

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.96  E-value=3.2e-08  Score=98.64  Aligned_cols=313  Identities=14%  Similarity=0.115  Sum_probs=199.0

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHH
Q 014945           74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV  153 (415)
Q Consensus        74 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~  153 (415)
                      ..+++.+.++++.++..++.++..++..+ -+ ...+  ..+++.|++.+.+++...++..|+.+|..++.........+
T Consensus        98 ~~ll~~l~~~~~~vr~~~a~~i~~i~~~~-~p-~~~w--peli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~  173 (861)
T d2bpta1          98 TNALTALVSIEPRIANAAAQLIAAIADIE-LP-HGAW--PELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQAL  173 (861)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHH-GG-GTCC--HHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTT
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHh-CC-cCch--HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            45677788888999999999988886532 11 1001  13578888888877656788889999999886433322211


Q ss_pred             Hh--CCChHHHHHhhC--CCCHHHHHHHHHHHHHhcCCCchhHH-HHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhh
Q 014945          154 ID--HGAVPIFVRLLS--SPTDDVREQAVWALGNVAGDSPKCRD-LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  228 (415)
Q Consensus       154 ~~--~g~i~~L~~ll~--~~~~~v~~~a~~~L~nl~~~~~~~~~-~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~  228 (415)
                      ..  ..++..++..+.  ..+..++..++.+++++...-+..-. .......++.+...+ ++++++++..++.++..++
T Consensus       174 ~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~l~~i~  252 (861)
T d2bpta1         174 VSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEAT-QAEDIEVQAAAFGCLCKIM  252 (861)
T ss_dssp             GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHH-TCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHh-cCCCHHHHHHHHHHHHHHH
Confidence            11  123444455443  35688999999999998755432111 111112345566666 6778899999999999998


Q ss_pred             hCCCCCchhhhhchHHH-HHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHH----------------HcCcHHHHHHh
Q 014945          229 RGKPQPLFEQTRPALPA-LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI----------------EAGVCPRLVEL  291 (415)
Q Consensus       229 ~~~~~~~~~~~~~~l~~-l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~----------------~~~~i~~L~~l  291 (415)
                      ...+..-.......+.. +.....+.++.++..++..+..++...........                -..+++.+...
T Consensus       253 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~  332 (861)
T d2bpta1         253 SKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNL  332 (861)
T ss_dssp             HHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            76443333333333433 34556777899999988888776543221111110                11245555666


Q ss_pred             cCC-------CChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcC-CHHHHHH
Q 014945          292 LRH-------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQA  363 (415)
Q Consensus       292 L~~-------~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~  363 (415)
                      +..       .+...+..+..++..++...+...-   . -..+.+...+.+. ++..+..++.+++.++.+ .......
T Consensus       333 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~-~~~~~~~~~~~~~-~~~~~~~a~~~l~~i~~~~~~~~~~~  407 (861)
T d2bpta1         333 LTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHIL---E-PVLEFVEQNITAD-NWRNREAAVMAFGSIMDGPDKVQRTY  407 (861)
T ss_dssp             TTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGH---H-HHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCHHHHHH
T ss_pred             HHHhhccccchhHHHHHHHHHHHHHHHhhcchhhh---h-hhcchhhhhhhhH-HHHHHHHHHHHHHHHHhhcchhhHHH
Confidence            542       2345677777777776653332111   0 1234455566666 889999999999999975 3444444


Q ss_pred             HHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhC
Q 014945          364 IIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  397 (415)
Q Consensus       364 l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~  397 (415)
                      .++. +++.++..+.++++.++..|+|+++.++.
T Consensus       408 ~l~~-~l~~l~~~l~d~~~~vr~~a~~~l~~l~~  440 (861)
T d2bpta1         408 YVHQ-ALPSILNLMNDQSLQVKETTAWCIGRIAD  440 (861)
T ss_dssp             HHHH-HHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHhcCcchhhhhHHHHHHHHHHH
Confidence            4444 78999999999999999999999998874

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.86  E-value=3.8e-07  Score=81.66  Aligned_cols=320  Identities=13%  Similarity=0.067  Sum_probs=204.4

Q ss_pred             cHHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhH----HHhc--CchHHHHHhhcCCCChHHHHHHHHHHHHHhC
Q 014945           72 SLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINE----VIQS--GVVPRFIEFLSRDDFPQLQFEAAWALTNIAS  144 (415)
Q Consensus        72 ~i~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~----~~~~--g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~  144 (415)
                      .+..++++|.. ..++.....+..+-.++...  +....    +.+.  ..-+.+..++..++ .-+...+..++..++.
T Consensus        75 ~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d--~~~~~~~~~~~~~~~~~~~~f~~~l~~~d-~~~~~~s~~i~~ll~~  151 (477)
T d1ho8a_          75 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSD--KYGDDTVKFFQEDPKQLEQLFDVSLKGDF-QTVLISGFNVVSLLVQ  151 (477)
T ss_dssp             THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCS--SSSHHHHHHHHHCTTHHHHHHHHCSCSSH-HHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcC--cchhHHHHHHhhCccchhHHHHHhccCch-hHHHHHHHHHHHHHHh
Confidence            56788888885 66778888888888887654  22211    1111  22345556665555 5666777778888877


Q ss_pred             CCchhhHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHh--cCChHHHHHHhcc-----------
Q 014945          145 GTSENTRVVID-HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS--NGALMPLLAQFNE-----------  210 (415)
Q Consensus       145 ~~~~~~~~~~~-~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~--~g~i~~L~~~l~~-----------  210 (415)
                      .+.......-. ......+-.+..+.+......++.++..+....+ +|..+..  ...+++++..|..           
T Consensus       152 ~~~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~-~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~  230 (477)
T d1ho8a_         152 NGLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPE-YRDVIWLHEKKFMPTLFKILQRATDSQLATRIV  230 (477)
T ss_dssp             TTTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHH-HHHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred             ccccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcCcc-HHHHHHHcccchHHHHHHHHHHHhcccccchhh
Confidence            54443332111 1123344445567788888899999998887765 6777643  3346777776632           


Q ss_pred             -----chhHhHHHHHHHHHHHhhhCCCCCchhhh--hchHHHHHHhhcC-CChhHHHHHHHHHHHhccCCh-----HHHH
Q 014945          211 -----HAKLSMLRNATWTLSNFCRGKPQPLFEQT--RPALPALERLIHS-NDDEVLTDACWALSYLSDGTN-----DKIQ  277 (415)
Q Consensus       211 -----~~~~~~~~~a~~~l~~l~~~~~~~~~~~~--~~~l~~l~~lL~~-~d~~v~~~a~~~l~~l~~~~~-----~~~~  277 (415)
                           ....+++..++.+++-|+...........  ...++.++.++.. .-++|..-++.++.|++....     ....
T Consensus       231 ~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~  310 (477)
T d1ho8a_         231 ATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQ  310 (477)
T ss_dssp             -----CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHH
T ss_pred             cccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHH
Confidence                 12457788999999999865322111111  2457788888854 568888899999999986532     1234


Q ss_pred             HHHHcCcHHHHHHhcC--CCChhhHHHHHHHHHHhhc-------CChHHHHHHH--------------------------
Q 014945          278 AVIEAGVCPRLVELLR--HPSPSVLIPALRTVGNIVT-------GDDMQTQCII--------------------------  322 (415)
Q Consensus       278 ~~~~~~~i~~L~~lL~--~~~~~v~~~a~~~l~nl~~-------~~~~~~~~~~--------------------------  322 (415)
                      .++..++++.+-.+..  -.|+++.. .+..|..+..       ..+++..++.                          
T Consensus       311 ~~v~~~~l~~l~~L~~r~~~Dedl~e-dl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~  389 (477)
T d1ho8a_         311 LLLLGNALPTVQSLSERKYSDEELRQ-DISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKD  389 (477)
T ss_dssp             HHHHHCHHHHHHHHHSSCCSSHHHHH-HHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSG
T ss_pred             HHHHcchhHHHHHHhcCCCCCHHHHH-HHHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhccc
Confidence            4566666655444332  22444332 2223322221       1122222221                          


Q ss_pred             HCCChHHHHHHhcC---------CCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHH
Q 014945          323 NHQALPCLLDLLTQ---------NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAIS  393 (415)
Q Consensus       323 ~~~~l~~L~~ll~~---------~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~  393 (415)
                      +..++..|+.+|++         +.++.+..-||.=++.++...|..+..+-+.|+=..++++|.++|++|+.+|+.|+.
T Consensus       390 ~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQ  469 (477)
T d1ho8a_         390 NYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQ  469 (477)
T ss_dssp             GGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            12457889999852         227788899999999999988887777778899999999999999999999999998


Q ss_pred             HHh
Q 014945          394 NAT  396 (415)
Q Consensus       394 nl~  396 (415)
                      .+.
T Consensus       470 klm  472 (477)
T d1ho8a_         470 AII  472 (477)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            775

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=5.8e-08  Score=97.05  Aligned_cols=319  Identities=14%  Similarity=0.148  Sum_probs=195.6

Q ss_pred             cHHHHHHhhcC--CCHHHHHHHHHHHHHHhccCCCCc-----------hhHHHhcCchHHHHHhhcCCCChHHHHHHHHH
Q 014945           72 SLPAMVAGVWS--DDRNIQLDATTQFRKLLSIERSPP-----------INEVIQSGVVPRFIEFLSRDDFPQLQFEAAWA  138 (415)
Q Consensus        72 ~i~~l~~~l~~--~~~~~~~~a~~~l~~l~~~~~~~~-----------~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~  138 (415)
                      .+..|.+.+.+  .+..+|..|+..|++.+... ...           ...-....+-..+++.+.+++  .++..++.+
T Consensus        36 f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~-~~~~~~~~~~~~~~i~~~~k~~ik~~ll~~l~~~~--~~~~~~a~~  112 (876)
T d1qgra_          36 FLVELSRVLANPGNSQVARVAAGLQIKNSLTSK-DPDIKAQYQQRWLAIDANARREVKNYVLHTLGTET--YRPSSASQC  112 (876)
T ss_dssp             HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCC--SSSCHHHHH
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcc-ccchhhhhhcccccCCHHHHHHHHHHHHHHhcCCc--HHHHHHHHH
Confidence            45566666654  34678999999999987542 111           111112234567788887765  345567888


Q ss_pred             HHHHhCCCchhhHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhcc-chhHh
Q 014945          139 LTNIASGTSENTRVVIDHGAVPIFVRLLSSP--TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE-HAKLS  215 (415)
Q Consensus       139 L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~-~~~~~  215 (415)
                      ++.++..  +.... .=.+.++.|++.+.++  ...++..++.+|+.++.+-....-.-.....++.++..+.. +.+..
T Consensus       113 i~~i~~~--~~p~~-~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~  189 (876)
T d1qgra_         113 VAGIACA--EIPVN-QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNN  189 (876)
T ss_dssp             HHHHHHH--HGGGT-CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHH
T ss_pred             HHHHHHH--HCCcc-ccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHH
Confidence            8888752  11000 0025788888887654  46788899999999875322110000111246666776643 33567


Q ss_pred             HHHHHHHHHHHhhhCCCC--CchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcC
Q 014945          216 MLRNATWTLSNFCRGKPQ--PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR  293 (415)
Q Consensus       216 ~~~~a~~~l~~l~~~~~~--~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~  293 (415)
                      ++..++.++.+.......  ........+++.+...+.+++++++..++.++..++...++.....+...+...+...+.
T Consensus       190 v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~  269 (876)
T d1qgra_         190 VKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK  269 (876)
T ss_dssp             HHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence            888888888877755311  111222345667778888899999999999999887655444333333444555555556


Q ss_pred             CCChhhHHHHHHHHHHhhcCChHH--------------------------------------------------------
Q 014945          294 HPSPSVLIPALRTVGNIVTGDDMQ--------------------------------------------------------  317 (415)
Q Consensus       294 ~~~~~v~~~a~~~l~nl~~~~~~~--------------------------------------------------------  317 (415)
                      +..+.++..++..+..++......                                                        
T Consensus       270 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~  349 (876)
T d1qgra_         270 SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAG  349 (876)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHH
Confidence            666666655555544443210000                                                        


Q ss_pred             --HH---HHHHCCCh----HHHHHHhcCCCccchHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHhccCCHHHHHH
Q 014945          318 --TQ---CIINHQAL----PCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKE  387 (415)
Q Consensus       318 --~~---~~~~~~~l----~~L~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~  387 (415)
                        ..   ......++    +.+...+.++ ++..|..++++++.+..+ ........... +++.+...+.++++.++..
T Consensus       350 ~~l~~l~~~~~~~~~~~~~~~i~~~l~~~-~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~l~d~~~~vr~~  427 (876)
T d1qgra_         350 VCLMLLATCCEDDIVPHVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPLVIQ-AMPTLIELMKDPSVVVRDT  427 (876)
T ss_dssp             HHHHHHHHHHGGGGHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCHHHHHHHHHH-HHHHHHHHHTCSSHHHHHH
T ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHhhccc-hHHHHHHHHHHHHhhhhhhhHHHHHHHHHH-HHHHHHHhhcCCccHHHHH
Confidence              00   00011223    3344455566 788899999999998875 45545544443 7899999999999999999


Q ss_pred             HHHHHHHHhCC
Q 014945          388 AAWAISNATSG  398 (415)
Q Consensus       388 a~~aL~nl~~~  398 (415)
                      |+|+++.++..
T Consensus       428 a~~~l~~~~~~  438 (876)
T d1qgra_         428 AAWTVGRICEL  438 (876)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998753

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.80  E-value=1.1e-07  Score=85.29  Aligned_cols=274  Identities=12%  Similarity=0.108  Sum_probs=179.7

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchh---HHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh
Q 014945           74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPIN---EVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  150 (415)
Q Consensus        74 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~---~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  150 (415)
                      +.+...+++++.-....+...+..+++.. .....   ....  ....+-.+...++ ...+..++.++..+... ++++
T Consensus       125 ~~f~~~l~~~d~~~~~~s~~i~~ll~~~~-~~~~~~~e~l~~--~~~~l~~l~~~~~-~~~~~i~v~~lq~llr~-~~~R  199 (477)
T d1ho8a_         125 QLFDVSLKGDFQTVLISGFNVVSLLVQNG-LHNVKLVEKLLK--NNNLINILQNIEQ-MDTCYVCIRLLQELAVI-PEYR  199 (477)
T ss_dssp             HHHHHCSCSSHHHHHHHHHHHHHHHTSTT-TCCHHHHHHHHH--CHHHHHHHHCTTC-HHHHHHHHHHHHHHHTS-HHHH
T ss_pred             HHHHHhccCchhHHHHHHHHHHHHHHhcc-ccccchHHHHHH--hhHHHHHhhcccc-cchHHHHHHHHHHHhcC-ccHH
Confidence            45556666667666667777777776543 22222   1222  2333344445566 78888999999998885 7888


Q ss_pred             HHHHh--CCChHHHHHhhCC-----------------CCHHHHHHHHHHHHHhcCCCchhHHHHHhc--CChHHHHHHhc
Q 014945          151 RVVID--HGAVPIFVRLLSS-----------------PTDDVREQAVWALGNVAGDSPKCRDLVLSN--GALMPLLAQFN  209 (415)
Q Consensus       151 ~~~~~--~g~i~~L~~ll~~-----------------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~--g~i~~L~~~l~  209 (415)
                      ..+.+  ...++.++..|..                 ....++..++.+++-++.+.. ....+.+.  +.++.++.++.
T Consensus       200 ~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~l~~~~~~~i~~l~~i~~  278 (477)
T d1ho8a_         200 DVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVK  278 (477)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHH
T ss_pred             HHHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHHhhhHHHHHHHHHHH
Confidence            87754  2345556555532                 134678899999999987655 44555444  34888888887


Q ss_pred             cchhHhHHHHHHHHHHHhhhCCCCCc-h----hhh-hchHHHHHHhhcC---CChhHHHHHHHHHHH-------hcc---
Q 014945          210 EHAKLSMLRNATWTLSNFCRGKPQPL-F----EQT-RPALPALERLIHS---NDDEVLTDACWALSY-------LSD---  270 (415)
Q Consensus       210 ~~~~~~~~~~a~~~l~~l~~~~~~~~-~----~~~-~~~l~~l~~lL~~---~d~~v~~~a~~~l~~-------l~~---  270 (415)
                      ....+.+.+-++.++.|++....... .    ..+ .++++. +..|..   .|+++..+.-..-..       ++.   
T Consensus       279 ~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~-l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~  357 (477)
T d1ho8a_         279 ITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPT-VQSLSERKYSDEELRQDISNLKEILENEYQELTSFDE  357 (477)
T ss_dssp             HCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHH-HHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHH-HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence            77889999999999999997642211 1    112 234444 444533   477766553222111       111   


Q ss_pred             -----------CCh-HHHHHHHHc----------CcHHHHHHhcC----------CCChhhHHHHHHHHHHhhcCChHHH
Q 014945          271 -----------GTN-DKIQAVIEA----------GVCPRLVELLR----------HPSPSVLIPALRTVGNIVTGDDMQT  318 (415)
Q Consensus       271 -----------~~~-~~~~~~~~~----------~~i~~L~~lL~----------~~~~~v~~~a~~~l~nl~~~~~~~~  318 (415)
                                 .++ ...+.+..+          .++..|+.+|.          +.++.+..-||.=+|.++...|..+
T Consensus       358 Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr  437 (477)
T d1ho8a_         358 YVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESI  437 (477)
T ss_dssp             HHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHH
T ss_pred             HHHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchh
Confidence                       111 111112211          35778888885          2356788889999999999999888


Q ss_pred             HHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc
Q 014945          319 QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA  355 (415)
Q Consensus       319 ~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~  355 (415)
                      ..+-+.|+-..+++++.++ +++||.+|..++.-+..
T Consensus       438 ~il~~lg~K~~vM~Lm~h~-d~~Vr~eAL~avQklm~  473 (477)
T d1ho8a_         438 DVLDKTGGKADIMELLNHS-DSRVKYEALKATQAIIG  473 (477)
T ss_dssp             HHHHHHSHHHHHHHHTSCS-SHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            8787889999999999999 99999999999987764

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.67  E-value=3.3e-09  Score=77.75  Aligned_cols=109  Identities=19%  Similarity=0.192  Sum_probs=88.6

Q ss_pred             hcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHH
Q 014945          250 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPC  329 (415)
Q Consensus       250 L~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~  329 (415)
                      |.++|+.|+..|+++|+.+..            ..++.|+..|.++++.++..|+++||++..  +         +.++.
T Consensus         1 L~D~~~~VR~~A~~aL~~~~~------------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~--~---------~~~~~   57 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---------RAVEP   57 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---------HHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHhCH------------HHHHHHHHHHcCCCHHHHHHHHHHHHhcch--h---------hhHHH
Confidence            456778888888888876532            245778899999999999999999998753  1         24688


Q ss_pred             HHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHH
Q 014945          330 LLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAIS  393 (415)
Q Consensus       330 L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~  393 (415)
                      |..++.++ ++.||..|+++|+.+.  ++.         .++.|..++.++++.||..|+.+|.
T Consensus        58 L~~~l~d~-~~~VR~~a~~aL~~i~--~~~---------~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          58 LIKLLEDD-SGFVRSGAARSLEQIG--GER---------VRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHHC-CTHHHHHHHHHHHHHC--SHH---------HHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHhhhccc-hhHHHHHHHHHHHHhC--ccc---------hHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            99999998 9999999999999884  333         4677888999999999999998874

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.46  E-value=1.8e-08  Score=73.61  Aligned_cols=109  Identities=19%  Similarity=0.243  Sum_probs=88.3

Q ss_pred             hcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChH
Q 014945          123 LSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALM  202 (415)
Q Consensus       123 l~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~  202 (415)
                      |++++ +.+|..|+++|+.+..            ..++.|+..|.++++.++..|+++|+++..  +         +.++
T Consensus         1 L~D~~-~~VR~~A~~aL~~~~~------------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~--~---------~~~~   56 (111)
T d1te4a_           1 MADEN-KWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---------RAVE   56 (111)
T ss_dssp             CCSSC-CCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---------HHHH
T ss_pred             CCCcC-HHHHHHHHHHHHHhCH------------HHHHHHHHHHcCCCHHHHHHHHHHHHhcch--h---------hhHH
Confidence            34555 7888888888876432            357889999999999999999999998742  1         2467


Q ss_pred             HHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHH
Q 014945          203 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALS  266 (415)
Q Consensus       203 ~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~  266 (415)
                      .|..+| .+.++.++..++++|..+..          ...+|.|..+++++++.++..|+.+|.
T Consensus        57 ~L~~~l-~d~~~~VR~~a~~aL~~i~~----------~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          57 PLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHHhhh-ccchhHHHHHHHHHHHHhCc----------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            888888 78899999999999998742          467888999999999999999988774

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=0.0031  Score=52.57  Aligned_cols=241  Identities=12%  Similarity=0.138  Sum_probs=163.4

Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhH----HHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhh
Q 014945          153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR----DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  228 (415)
Q Consensus       153 ~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~----~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~  228 (415)
                      +...+.+..|+..|..-+-+-+..+..+++++.......+    +.+..  -.+.+..++..-.++++.-.+...|....
T Consensus        65 ~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~--~~eil~~L~~gye~~eiAl~~G~mLREci  142 (330)
T d1upka_          65 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRECI  142 (330)
T ss_dssp             HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHHH
T ss_pred             HHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHc--CHHHHHHHHhhcCCcchhhhhhHHHHHHH
Confidence            3445678888888888888889999999999875443322    34443  23444444433346666667777777766


Q ss_pred             hCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcC---cHHHHHHhcCCCChhhHHHHHH
Q 014945          229 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAG---VCPRLVELLRHPSPSVLIPALR  305 (415)
Q Consensus       229 ~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~---~i~~L~~lL~~~~~~v~~~a~~  305 (415)
                      ++..-.......+.+..+.+.++.++-+|..+|..++..+..........++..+   ++.....+|.+++--++..++.
T Consensus       143 k~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlK  222 (330)
T d1upka_         143 RHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK  222 (330)
T ss_dssp             TSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred             hhHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHH
Confidence            6644344444456677788888999999999999999988766665555565553   5777888899999999999999


Q ss_pred             HHHHhhcCChH--HH-HHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcC---CHHHHHHHHHc--CCHHHHHHHh
Q 014945          306 TVGNIVTGDDM--QT-QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG---NVNQIQAIIEA--GIIGPLVNLL  377 (415)
Q Consensus       306 ~l~nl~~~~~~--~~-~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~---~~~~~~~l~~~--~~i~~L~~~l  377 (415)
                      .||.+......  .. ..+-+..-+..++.+|++. +..++-+|..++--++++   .++...-+..+  .++..|-++.
T Consensus       223 LLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~-sk~Iq~EAFhVFKvFVANpnKp~~I~~IL~~Nr~kLl~fl~~f~  301 (330)
T d1upka_         223 LLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQ  301 (330)
T ss_dssp             HHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTT
T ss_pred             HHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCc-hhhHHHHhhhHhhhhhcCCCCCHHHHHHHHHhHHHHHHHHHhCC
Confidence            99999965432  11 2222335688999999999 999999999999988873   34444444432  2444444444


Q ss_pred             cc--CCHHHHHHHHHHHHHHh
Q 014945          378 LN--AEFEIKKEAAWAISNAT  396 (415)
Q Consensus       378 ~~--~~~~v~~~a~~aL~nl~  396 (415)
                      .+  .|.....+=...+..+.
T Consensus       302 ~d~~~DeqF~~EK~~lI~~I~  322 (330)
T d1upka_         302 NDRTEDEQFNDEKTYLVKQIR  322 (330)
T ss_dssp             TTC-CCSHHHHHHHHHHHHHH
T ss_pred             CCCCchhhHHHHHHHHHHHHH
Confidence            33  35556555555555544

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=0.014  Score=48.62  Aligned_cols=201  Identities=12%  Similarity=0.105  Sum_probs=148.5

Q ss_pred             HHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhh------hchHHHHHHhhcCCChhHHHHHHHHHHH
Q 014945          194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT------RPALPALERLIHSNDDEVLTDACWALSY  267 (415)
Q Consensus       194 ~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~------~~~l~~l~~lL~~~d~~v~~~a~~~l~~  267 (415)
                      .+...+.+..|+..| ..-+.+.++.++.+++++.+.........+      ..++..|+....  ++++...+-..|..
T Consensus        64 e~~~~d~l~~Li~~L-~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye--~~eiAl~~G~mLRE  140 (330)
T d1upka_          64 ELYNSGLLSTLVADL-QLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRE  140 (330)
T ss_dssp             HHHHHSHHHHHHHTG-GGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHH
T ss_pred             HHHHhChHHHHHHhC-CCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcC--CcchhhhhhHHHHH
Confidence            445566777888888 777889999999999999998744333222      344555555544  34443444344444


Q ss_pred             hccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHC---CChHHHHHHhcCCCccchHH
Q 014945          268 LSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH---QALPCLLDLLTQNYKKSIKK  344 (415)
Q Consensus       268 l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~---~~l~~L~~ll~~~~~~~v~~  344 (415)
                      +.. .+.....++...-+..+......++-++...|..++..+.+..+.....++..   .++.....+|.++ +.-+|.
T Consensus       141 cik-~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~-NYVtrR  218 (330)
T d1upka_         141 CIR-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-NYVTKR  218 (330)
T ss_dssp             HHT-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-SHHHHH
T ss_pred             HHh-hHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCC-chHHHH
Confidence            444 44455678888888999999999999999999999999998887666666654   3567778899888 999999


Q ss_pred             HHHHHHHHHhc--CCHHHHHHHHH-cCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Q 014945          345 EACWTISNITA--GNVNQIQAIIE-AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG  399 (415)
Q Consensus       345 ~a~~~l~nl~~--~~~~~~~~l~~-~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~  399 (415)
                      .+...|+.+..  .+.......++ ..-+..++.+|.+....++.+|-..+.-++...
T Consensus       219 qSlKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANp  276 (330)
T d1upka_         219 QSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP  276 (330)
T ss_dssp             HHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCC
Confidence            99999999996  34454444443 345889999999999999999999998887654

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.41  E-value=4.1e-05  Score=62.63  Aligned_cols=176  Identities=16%  Similarity=0.053  Sum_probs=92.0

Q ss_pred             hhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCCh
Q 014945          122 FLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL  201 (415)
Q Consensus       122 ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i  201 (415)
                      +|.++. .+++..|+.                  ...+..|..+++++++.|+..+++.|+                  .
T Consensus        50 ~l~~p~-~e~Ra~Aa~------------------~a~~~~L~~Ll~D~d~~VR~~AA~~Lp------------------~   92 (233)
T d1lrva_          50 YLADPF-WERRAIAVR------------------YSPVEALTPLIRDSDEVVRRAVAYRLP------------------R   92 (233)
T ss_dssp             GTTCSS-HHHHHHHHT------------------TSCGGGGGGGTTCSSHHHHHHHHTTSC------------------S
T ss_pred             HhcCCc-HHHHHHHHh------------------cCCHHHHHHHhcCCCHHHHHHHHHHcC------------------H
Confidence            555665 677765542                  123667788889999999988876542                  1


Q ss_pred             HHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHH-----HHhccCCh-HH
Q 014945          202 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWAL-----SYLSDGTN-DK  275 (415)
Q Consensus       202 ~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l-----~~l~~~~~-~~  275 (415)
                      ..+..++ .+++..++..+...+   .              .+.|..++.++|+.|+..++..+     ..+....+ +.
T Consensus        93 ~~L~~L~-~D~d~~VR~~aa~~l---~--------------~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~~D~d~~V  154 (233)
T d1lrva_          93 EQLSALM-FDEDREVRITVADRL---P--------------LEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQV  154 (233)
T ss_dssp             GGGGGTT-TCSCHHHHHHHHHHS---C--------------TGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHH
T ss_pred             HHHHHHh-cCCChhHHHHHHhcc---C--------------HHHHHHHhcCCCHHHHHHHHhccchhHHHHHhcCCCHHH
Confidence            1233333 566666666655432   1              12344556666666666655421     11111111 11


Q ss_pred             HHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc
Q 014945          276 IQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA  355 (415)
Q Consensus       276 ~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~  355 (415)
                      ...+...-..+.|..+++++++.|+..++..++                  .+.|..++.++ ++.||..++.       
T Consensus       155 R~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~L~------------------~~~L~~l~~D~-d~~VR~aaae-------  208 (233)
T d1lrva_         155 RKLVAKRLPEESLGLMTQDPEPEVRRIVASRLR------------------GDDLLELLHDP-DWTVRLAAVE-------  208 (233)
T ss_dssp             HHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHCC------------------GGGGGGGGGCS-SHHHHHHHHH-------
T ss_pred             HHHHHHhcCHHHHHHHccCCCHHHHHHHHHhcC------------------cHHHHHHHhCC-CHHHHHHHHH-------
Confidence            111111112234444555555555555543321                  13344555555 6666655542       


Q ss_pred             CCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHH
Q 014945          356 GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAW  390 (415)
Q Consensus       356 ~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~  390 (415)
                                 . +.+.++..|.+++++|+..|..
T Consensus       209 -----------~-~~~~ll~~L~D~d~~VR~aA~~  231 (233)
T d1lrva_         209 -----------H-ASLEALRELDEPDPEVRLAIAG  231 (233)
T ss_dssp             -----------H-SCHHHHHHCCCCCHHHHHHHHC
T ss_pred             -----------h-ccHHHHHHhCCCCHHHHHHHHH
Confidence                       1 2345667778888888887764

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.72  E-value=0.038  Score=54.55  Aligned_cols=260  Identities=9%  Similarity=0.034  Sum_probs=133.8

Q ss_pred             HHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhC--CCCHHHHHHHHHHHHHhcCCCchhHHHHHh----cCChHHH
Q 014945          131 LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS--SPTDDVREQAVWALGNVAGDSPKCRDLVLS----NGALMPL  204 (415)
Q Consensus       131 i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~--~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~----~g~i~~L  204 (415)
                      .+..|..++..++...++.....+..-+...+.....  +.+...++.++.+++.++............    ....+.+
T Consensus       377 ~r~~a~~ll~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l  456 (959)
T d1wa5c_         377 RRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFF  456 (959)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHH
Confidence            4556666666666543332211111111111222222  246777888888888876322111000000    0011122


Q ss_pred             ----HHHhc--cchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChH----
Q 014945          205 ----LAQFN--EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND----  274 (415)
Q Consensus       205 ----~~~l~--~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~----  274 (415)
                          ...+.  ......++..++|+++..+....   ......+++.++.+|++++..++..|++++..++.....    
T Consensus       457 ~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~---~~~~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~  533 (959)
T d1wa5c_         457 TKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT---KAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSP  533 (959)
T ss_dssp             HHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC---HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSC
T ss_pred             HHHHHHHHccCCCchHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccc
Confidence                22231  22356688899999999987532   234567899999999999999999999999998753221    


Q ss_pred             -------HHHHHHHcCcHHHHHHhcCCCCh-----hhHHHHHHHHHHhhcCCh----HHHHHHHHCCChHHHHHHhcCCC
Q 014945          275 -------KIQAVIEAGVCPRLVELLRHPSP-----SVLIPALRTVGNIVTGDD----MQTQCIINHQALPCLLDLLTQNY  338 (415)
Q Consensus       275 -------~~~~~~~~~~i~~L~~lL~~~~~-----~v~~~a~~~l~nl~~~~~----~~~~~~~~~~~l~~L~~ll~~~~  338 (415)
                             .....+ ..++..++..+.....     .....++.+++.++....    .....+++ .+.+.+....+++.
T Consensus       534 ~~~~~~~~l~p~l-~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~-~l~~~~~~~~~~~~  611 (959)
T d1wa5c_         534 AFIFHKEDISNST-EILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLA-QFIEIVTIMAKNPS  611 (959)
T ss_dssp             CBSSCGGGTTTTH-HHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHH-HHHHHHHHHTTSCC
T ss_pred             hhhccHHHHHhhH-HHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCcc
Confidence                   001011 1233444444432221     122345566665543221    22222221 22223333334443


Q ss_pred             ccchHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHh
Q 014945          339 KKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT  396 (415)
Q Consensus       339 ~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~  396 (415)
                      ++.....+..+++.+.. .+++....+. ..++|.+...+.....+....+...+..+.
T Consensus       612 ~~~~~~~~~e~l~~l~~~~~~~~~~~l~-~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~  669 (959)
T d1wa5c_         612 NPRFTHYTFESIGAILNYTQRQNLPLLV-DSMMPTFLTVFSEDIQEFIPYVFQIIAFVV  669 (959)
T ss_dssp             CHHHHHHHHHHHHHHHHTSCGGGHHHHH-HHHHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhcCchhHHHHH-HHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence            45666677777877765 3344444433 336788888877666556666666555554

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.63  E-value=0.092  Score=51.61  Aligned_cols=266  Identities=11%  Similarity=0.089  Sum_probs=137.2

Q ss_pred             hHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchh--------HHHHHh--c
Q 014945          129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC--------RDLVLS--N  198 (415)
Q Consensus       129 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~--------~~~~~~--~  198 (415)
                      +.++..++|+++..+.....  ...  ..+++.++.+|.+++..++..|++++..++......        .+.+..  .
T Consensus       472 ~~lr~~~~~~i~~~~~~~~~--~~~--~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~  547 (959)
T d1wa5c_         472 IILRVDAIKYIYTFRNQLTK--AQL--IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTE  547 (959)
T ss_dssp             HHHHHHHHHHHHHTGGGSCH--HHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHH
T ss_pred             HHHHHHHHHHHHHHHhhccH--HHH--HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHH
Confidence            67899999999998864321  222  246889999999999999999999999997532210        000000  0


Q ss_pred             CChHHHHHHhccch----hHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhh----cC-CChhHHHHHHHHHHHhc
Q 014945          199 GALMPLLAQFNEHA----KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI----HS-NDDEVLTDACWALSYLS  269 (415)
Q Consensus       199 g~i~~L~~~l~~~~----~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL----~~-~d~~v~~~a~~~l~~l~  269 (415)
                      ..+..++..+....    .......++.++..+....+.........+++.+...+    ++ .++.....+..+++.+.
T Consensus       548 ~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~  627 (959)
T d1wa5c_         548 ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAIL  627 (959)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence            12334444442211    11122345566665554433333333344455554443    22 24556666667777765


Q ss_pred             cCC-hHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh-------HHHHHHHH------------------
Q 014945          270 DGT-NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD-------MQTQCIIN------------------  323 (415)
Q Consensus       270 ~~~-~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~-------~~~~~~~~------------------  323 (415)
                      ... ++... -+...+++.+...+..........++..++.+....+       .....++.                  
T Consensus       628 ~~~~~~~~~-~l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~  706 (959)
T d1wa5c_         628 NYTQRQNLP-LLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELKGNIPAVTRLLK  706 (959)
T ss_dssp             HTSCGGGHH-HHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTGGGHHHHTSGGGGCCTTTHHHHHHHHH
T ss_pred             HhcCchhHH-HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCCccHHHHHHHHHHhhHHHHHHhhhHHHHHHHHH
Confidence            332 22222 2233456666666665555555555555554432110       00000000                  


Q ss_pred             -------------CCChHHHHHHhcCCCccchHHHHHHHHHHHhcCC-HHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHH
Q 014945          324 -------------HQALPCLLDLLTQNYKKSIKKEACWTISNITAGN-VNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEA  388 (415)
Q Consensus       324 -------------~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~-~~~~~~l~~~~~i~~L~~~l~~-~~~~v~~~a  388 (415)
                                   .+.+..+..++...   .....++..+..+.... .+.....+.. ++..++..+.. ..+.+....
T Consensus       707 ~~~~~~~~~~~~~~~~l~~~~~~l~~~---~~~~~~~~ll~~ii~~~~~~~~~~~l~~-i~~~~~~~l~~~~~~~~~~~~  782 (959)
T d1wa5c_         707 SFIKTDSSIFPDLVPVLGIFQRLIASK---AYEVHGFDLLEHIMLLIDMNRLRPYIKQ-IAVLLLQRLQNSKTERYVKKL  782 (959)
T ss_dssp             HHHHHHGGGCSCSHHHHHHHHHHHTCT---TTHHHHHHHHHHHHHHSCHHHHGGGHHH-HHHHHHHGGGSSCCHHHHHHH
T ss_pred             HHHHhCHHhhcchHHHHHHHHHHHCCC---cchHHHHHHHHHHHHHCchhhhHhHHHH-HHHHHHHHHHhcccHHHHHHH
Confidence                         01222333334333   22345666666665422 2222332322 55566666665 457778888


Q ss_pred             HHHHHHHhCCCCHHH
Q 014945          389 AWAISNATSGGSNEQ  403 (415)
Q Consensus       389 ~~aL~nl~~~~~~~~  403 (415)
                      ++.++.++...++..
T Consensus       783 ~~~~~~~~~~~~~~~  797 (959)
T d1wa5c_         783 TVFFGLISNKLGSDF  797 (959)
T ss_dssp             HHHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHcCHHH
Confidence            888888876434443

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.58  E-value=0.001  Score=54.02  Aligned_cols=23  Identities=17%  Similarity=0.303  Sum_probs=16.0

Q ss_pred             hHHHHHhhcCCCChHHHHHHHHHH
Q 014945          116 VPRFIEFLSRDDFPQLQFEAAWAL  139 (415)
Q Consensus       116 i~~L~~ll~~~~~~~i~~~a~~~L  139 (415)
                      +..|..++++++ +.++..|+..|
T Consensus        68 ~~~L~~Ll~D~d-~~VR~~AA~~L   90 (233)
T d1lrva_          68 VEALTPLIRDSD-EVVRRAVAYRL   90 (233)
T ss_dssp             GGGGGGGTTCSS-HHHHHHHHTTS
T ss_pred             HHHHHHHhcCCC-HHHHHHHHHHc
Confidence            445667777777 88888877543

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=96.49  E-value=0.2  Score=42.55  Aligned_cols=206  Identities=14%  Similarity=0.111  Sum_probs=125.5

Q ss_pred             ChHHHHHhhCCCC--HHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhcc---chhHhHHHHHHHHHHHhhhC--
Q 014945          158 AVPIFVRLLSSPT--DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE---HAKLSMLRNATWTLSNFCRG--  230 (415)
Q Consensus       158 ~i~~L~~ll~~~~--~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~---~~~~~~~~~a~~~l~~l~~~--  230 (415)
                      .+..+.+++.+..  .......++.+.....-++   +      .+..+..++..   ..++.+...+..+++++...  
T Consensus        89 a~~~i~~~I~~~~ls~~ea~~~l~~l~~~~~Pt~---~------~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c  159 (336)
T d1lsha1          89 ALLFLKRTLASEQLTSAEATQIVASTLSNQQATR---E------SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYC  159 (336)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHTCCCCH---H------HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHhccCCCCH---H------HHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHh
Confidence            4555666665532  3333445555554433222   1      33455566632   23566777777777766543  


Q ss_pred             --CCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCC-------CChhhHH
Q 014945          231 --KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-------PSPSVLI  301 (415)
Q Consensus       231 --~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-------~~~~v~~  301 (415)
                        .+.........+...+.+.....+.+-..-++.+|+|+..  +         +.++.+..++..       .+..++.
T Consensus       160 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~--p---------~~i~~l~~~l~~~~~~~~~~~~~vR~  228 (336)
T d1lsha1         160 ANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQA  228 (336)
T ss_dssp             TTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--G---------GGHHHHHTTSTTSSSCCCCSCHHHHH
T ss_pred             cCCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC--H---------hHHHHHHHHhcccccccccccHHHHH
Confidence              3333334444555566666667777777888999999852  2         245677777743       2457999


Q ss_pred             HHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcC-CCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhc-c
Q 014945          302 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL-N  379 (415)
Q Consensus       302 ~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~-~  379 (415)
                      .|++++.+++...+...+        +.++.++.+ .+++++|..|+.++... .-+..         .+..+...+. .
T Consensus       229 aAi~Alr~~~~~~p~~v~--------~~l~~i~~n~~e~~EvRiaA~~~lm~t-~P~~~---------~l~~i~~~l~~E  290 (336)
T d1lsha1         229 EAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIRSCIVFFES-KPSVA---------LVSMVAVRLRRE  290 (336)
T ss_dssp             HHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHHHHHHHHHT-CCCHH---------HHHHHHHHHTTC
T ss_pred             HHHHHHHHhhhcCcHHHH--------HHHHHHHcCCCCChHHHHHHHHHHHhc-CCCHH---------HHHHHHHHHHhC
Confidence            999999999887664333        345555533 34678998888888653 22333         2344455554 3


Q ss_pred             CCHHHHHHHHHHHHHHhCCCCH
Q 014945          380 AEFEIKKEAAWAISNATSGGSN  401 (415)
Q Consensus       380 ~~~~v~~~a~~aL~nl~~~~~~  401 (415)
                      ++.+|.......|.+++....+
T Consensus       291 ~~~QV~sfv~S~l~~la~s~~P  312 (336)
T d1lsha1         291 PNLQVASFVYSQMRSLSRSSNP  312 (336)
T ss_dssp             SCHHHHHHHHHHHHHHTTCCSG
T ss_pred             cHHHHHHHHHHHHHHHHhCCCc
Confidence            6788888888888888876654

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=95.76  E-value=0.29  Score=41.52  Aligned_cols=201  Identities=15%  Similarity=0.172  Sum_probs=121.8

Q ss_pred             chHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCC----CCHHHHHHHHHHHHHhc----C
Q 014945          115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS----PTDDVREQAVWALGNVA----G  186 (415)
Q Consensus       115 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~----~~~~v~~~a~~~L~nl~----~  186 (415)
                      .+..+.+++.+.. ... ..|...+..++.. ..-..     ..+..+..++.+    .++.++..++-++|++.    .
T Consensus        89 a~~~i~~~I~~~~-ls~-~ea~~~l~~l~~~-~~Pt~-----~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~  160 (336)
T d1lsha1          89 ALLFLKRTLASEQ-LTS-AEATQIVASTLSN-QQATR-----ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCA  160 (336)
T ss_dssp             HHHHHHHHHHTTC-SCH-HHHHHHHHHHHHT-CCCCH-----HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCC-CCH-HHHHHHHHHHhcc-CCCCH-----HHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhc
Confidence            4556677776654 222 2233334444332 11111     135566667765    47888899999999876    2


Q ss_pred             CCchhHHHHHhcCChHHHHHHhc---cchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcC-------CChh
Q 014945          187 DSPKCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS-------NDDE  256 (415)
Q Consensus       187 ~~~~~~~~~~~~g~i~~L~~~l~---~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~-------~d~~  256 (415)
                      ..+.+..     ..++.+...+.   ...+.+-...++.+|+|+-.          ...++.+.+++..       .+..
T Consensus       161 ~~~~~~~-----~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------p~~i~~l~~~l~~~~~~~~~~~~~  225 (336)
T d1lsha1         161 NTVSCPD-----ELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ----------PNSIKKIQRFLPGQGKSLDEYSTR  225 (336)
T ss_dssp             TCSSCCG-----GGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC----------GGGHHHHHTTSTTSSSCCCCSCHH
T ss_pred             CCCCCcH-----HHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC----------HhHHHHHHHHhcccccccccccHH
Confidence            2222222     23445555442   33445556677888888853          2557778877753       2467


Q ss_pred             HHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcC--CCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHh
Q 014945          257 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR--HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL  334 (415)
Q Consensus       257 v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~--~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll  334 (415)
                      ++..|++++..+....+...+        +.+.+++.  ..+.++|..|+..|-.  +.++ .       ..+..+...+
T Consensus       226 vR~aAi~Alr~~~~~~p~~v~--------~~l~~i~~n~~e~~EvRiaA~~~lm~--t~P~-~-------~~l~~i~~~l  287 (336)
T d1lsha1         226 VQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIRSCIVFFE--SKPS-V-------ALVSMVAVRL  287 (336)
T ss_dssp             HHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHHHHHHHHH--TCCC-H-------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhcCcHHHH--------HHHHHHHcCCCCChHHHHHHHHHHHh--cCCC-H-------HHHHHHHHHH
Confidence            999999999999877665433        44555553  3457888888877733  2222 1       2356677777


Q ss_pred             cCCCccchHHHHHHHHHHHhcC
Q 014945          335 TQNYKKSIKKEACWTISNITAG  356 (415)
Q Consensus       335 ~~~~~~~v~~~a~~~l~nl~~~  356 (415)
                      ....+..|+......|.+++..
T Consensus       288 ~~E~~~QV~sfv~S~l~~la~s  309 (336)
T d1lsha1         288 RREPNLQVASFVYSQMRSLSRS  309 (336)
T ss_dssp             TTCSCHHHHHHHHHHHHHHTTC
T ss_pred             HhCcHHHHHHHHHHHHHHHHhC
Confidence            6665778888888888888873

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.87  E-value=0.94  Score=38.33  Aligned_cols=143  Identities=12%  Similarity=0.133  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcC----C------CChHHHHHHHHHHHHHhCCCchhhHH-HHhCC
Q 014945           89 LDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR----D------DFPQLQFEAAWALTNIASGTSENTRV-VIDHG  157 (415)
Q Consensus        89 ~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~----~------~~~~i~~~a~~~L~~l~~~~~~~~~~-~~~~g  157 (415)
                      ...+..|+--+..++..-++.+ ..+++..|+.+|..    .      .+...+..++.||..+... ...... +-..+
T Consensus        21 ~~~L~sL~v~Lrt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~-~~G~~~vl~~~~   98 (343)
T d2bnxa1          21 LSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEE   98 (343)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSS-HHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHhcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhcc-HHHHHHHHcChH
Confidence            3344445444443322223445 34456666666531    1      1256888999999999885 444444 44568


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC--chhHHHHH----------hcCChHHHHHHhccchhHhHHHHHHHHHH
Q 014945          158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDS--PKCRDLVL----------SNGALMPLLAQFNEHAKLSMLRNATWTLS  225 (415)
Q Consensus       158 ~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~--~~~~~~~~----------~~g~i~~L~~~l~~~~~~~~~~~a~~~l~  225 (415)
                      ++..+...+.++++.++..|+..|..+|..+  +.....++          +.+-..+++..+....+.+....++..+-
T Consensus        99 ~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN  178 (343)
T d2bnxa1          99 GILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLIN  178 (343)
T ss_dssp             HHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHH
Confidence            8999999999999999999999999998542  22222222          34456778888866667778877777777


Q ss_pred             HhhhCCCC
Q 014945          226 NFCRGKPQ  233 (415)
Q Consensus       226 ~l~~~~~~  233 (415)
                      .+..+.+.
T Consensus       179 ~li~~~~d  186 (343)
T d2bnxa1         179 ALITPAEE  186 (343)
T ss_dssp             HHHTTCSC
T ss_pred             HHHcCccc
Confidence            77766443

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.92  E-value=2.3  Score=35.84  Aligned_cols=165  Identities=12%  Similarity=0.122  Sum_probs=100.9

Q ss_pred             chhhHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHh
Q 014945          147 SENTRVVIDHGAVPIFVRLLSS-----------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLS  215 (415)
Q Consensus       147 ~~~~~~~~~~g~i~~L~~ll~~-----------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~  215 (415)
                      ..+...+ ..+++..|+.+|..           .+......++.||..+.....+....+-..+.+..+...+ .+++..
T Consensus        36 ~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L-~s~~~~  113 (343)
T d2bnxa1          36 VSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAVPN  113 (343)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTC-CTTSHH
T ss_pred             chHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHcc-CCCchH
Confidence            4445555 34456666666521           1355778899999999887776666666667788888888 778888


Q ss_pred             HHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCC
Q 014945          216 MLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP  295 (415)
Q Consensus       216 ~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~  295 (415)
                      ++..++..|..+|.......      +               ...++.++.+..        ..-+.+-+..++..|...
T Consensus       114 tr~~a~elL~~lc~~~~~~~------g---------------~~~vL~Al~~~~--------~~~e~~RF~~lv~~l~~~  164 (343)
T d2bnxa1         114 MMIDAAKLLSALCILPQPED------M---------------NERVLEAMTERA--------EMDEVERFQPLLDGLKSG  164 (343)
T ss_dssp             HHHHHHHHHHHHHTCCSSTT------H---------------HHHHHHHHHHHH--------HHHTSCTTHHHHHHTSTT
T ss_pred             HHHHHHHHHHHHHhccCCCc------h---------------HHHHHHHHHHHH--------HhcCCCcHHHHHHHHhcc
Confidence            99999999999986532111      1               112222222211        122234456677777544


Q ss_pred             -ChhhHHHHHHHHHHhhcCChH------HHHHHHHCCChHHHHHHhcCCCccchH
Q 014945          296 -SPSVLIPALRTVGNIVTGDDM------QTQCIINHQALPCLLDLLTQNYKKSIK  343 (415)
Q Consensus       296 -~~~v~~~a~~~l~nl~~~~~~------~~~~~~~~~~l~~L~~ll~~~~~~~v~  343 (415)
                       +......++..+..++.+.+.      .+..+...|+.+.+-.+=... ++.+.
T Consensus       165 ~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~Gl~~il~~l~~~~-~~~L~  218 (343)
T d2bnxa1         165 TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIE-NEDMK  218 (343)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCC-CHHHH
T ss_pred             ccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCChHHHHHHHHccC-ChHHH
Confidence             467777888888888877652      344555667666555444333 44443

>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: B56-like
domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.19  E-value=1.3  Score=37.28  Aligned_cols=189  Identities=12%  Similarity=0.043  Sum_probs=107.6

Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCC
Q 014945          154 IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ  233 (415)
Q Consensus       154 ~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~  233 (415)
                      ++...+..|+.++.++|+.-|+....+|..+-+.-...|..+.+. ....+.+.+.......-...+++.++.+..+-..
T Consensus       130 id~~Fi~~Ll~lf~S~D~rER~~lk~~l~~iy~kf~~~R~~Ir~~-i~~if~~fi~e~~~~~gI~elLeil~sii~gf~~  208 (343)
T d2jaka1         130 IDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGSIINGFAL  208 (343)
T ss_dssp             SCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHH-HHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCS
T ss_pred             CCHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHhhcCCCCccHHHHHHHHHHHHHhccC
Confidence            334457889999999999999999999999877766666665542 4455666664444555667788888888877533


Q ss_pred             -CchhhhhchHHHHHHhhcCCCh-hHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhh
Q 014945          234 -PLFEQTRPALPALERLIHSNDD-EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV  311 (415)
Q Consensus       234 -~~~~~~~~~l~~l~~lL~~~d~-~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~  311 (415)
                       .......-....++.+.+...- ..-.....++......++.....+     +..++..==..+..=...-+.-|..+.
T Consensus       209 plkeeh~~f~~~vllPLhk~~~~~~y~~qL~~~v~~f~~kDp~l~~~~-----i~~llk~WP~t~~~Kev~FL~el~~il  283 (343)
T d2jaka1         209 PLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFLNELEEIL  283 (343)
T ss_dssp             SCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHSSCSSCCTTHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcCchhHHHH-----HHHHHHhCCCCCchHHHHHHHHHHHHH
Confidence             2333334444555566555432 223333344444444444333221     223333321223333344455556555


Q ss_pred             cCCh-HHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHH
Q 014945          312 TGDD-MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI  350 (415)
Q Consensus       312 ~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l  350 (415)
                      ...+ ...+.+.. -++..+...++++ +..|.+.|....
T Consensus       284 ~~~~~~~f~~~~~-~lf~~la~ci~S~-h~qVAErAl~~w  321 (343)
T d2jaka1         284 DVIEPSEFVKIME-PLFRQLAKCVSSP-HFQVAERALYYW  321 (343)
T ss_dssp             HTCCHHHHHHHHH-HHHHHHHHHHTCS-SHHHHHHHHGGG
T ss_pred             HhCCHHHHHHHHH-HHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence            4433 23332222 4566777788887 888777766544

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.39  E-value=1.3  Score=32.14  Aligned_cols=74  Identities=12%  Similarity=0.033  Sum_probs=56.7

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcC------CCChHHHHHHHHHHHHHhC
Q 014945           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR------DDFPQLQFEAAWALTNIAS  144 (415)
Q Consensus        71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~------~~~~~i~~~a~~~L~~l~~  144 (415)
                      .++..+.+.|++.++..+..|+..|-.+....+.....++...+++..|+++++.      .+ ..++..++..+...+.
T Consensus        45 ~a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~-~~Vk~kil~li~~W~~  123 (145)
T d1ujka_          45 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTS-EKVKNKILELLYSWTV  123 (145)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSC-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCc-HHHHHHHHHHHHHHHH
Confidence            4677788889999999999999999888765333334567788899999999864      33 6888888888877665


Q ss_pred             C
Q 014945          145 G  145 (415)
Q Consensus       145 ~  145 (415)
                      .
T Consensus       124 ~  124 (145)
T d1ujka_         124 G  124 (145)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=83.25  E-value=2.3  Score=30.64  Aligned_cols=74  Identities=7%  Similarity=0.082  Sum_probs=58.1

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC-chhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC
Q 014945          158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK  231 (415)
Q Consensus       158 ~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~  231 (415)
                      ++..|.+-+.++++.++..|+..|-.+..++ +.++..+...+++..|..++....+..++..++..+...+...
T Consensus        43 a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f  117 (145)
T d1dvpa1          43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAF  117 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Confidence            4667778888999999999999999888764 5567777777788888888855567788888888877766643

>d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: BC3264-like
domain: Hypothetical protein EF3068
species: Enterococcus faecalis [TaxId: 1351]

Probab=81.99  E-value=7.5  Score=29.83  Aligned_cols=77  Identities=9%  Similarity=0.018  Sum_probs=52.3

Q ss_pred             HHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHH
Q 014945          285 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI  364 (415)
Q Consensus       285 i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l  364 (415)
                      .+.+.....+++.-++..|+.+.-......+  ...     ++..+..++.++ +.-|++...|+|..++..+|+.+..+
T Consensus       121 ~~~l~~w~~s~~~w~rR~aiv~~l~~~~~~~--~~~-----~~~~~~~~~~d~-e~~i~kAigW~Lre~~k~~p~~v~~f  192 (213)
T d2b6ca1         121 PTIFALFYGAENFWNRRVALNLQLMLKEKTN--QDL-----LKKAIIYDRTTE-EFFIQKAIGWSLRQYSKTNPQWVEEL  192 (213)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHTTTTCGGGCC--HHH-----HHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHccc--HHH-----HHHHHHHhCCCh-HHHHHHHHHHHHHHHHHHCHHHHHHH
Confidence            4667777888888777776554322222222  221     234555666776 88999999999999999999888777


Q ss_pred             HHcCC
Q 014945          365 IEAGI  369 (415)
Q Consensus       365 ~~~~~  369 (415)
                      ++.+.
T Consensus       193 l~~~~  197 (213)
T d2b6ca1         193 MKELV  197 (213)
T ss_dssp             HHHSC
T ss_pred             HHhCC
Confidence            76543

>d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: BC3264-like
domain: Hypothetical protein EF3068
species: Enterococcus faecalis [TaxId: 1351]

Probab=81.13  E-value=8.6  Score=29.47  Aligned_cols=135  Identities=7%  Similarity=-0.057  Sum_probs=80.8

Q ss_pred             HHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCC-CChhhHHHHHHHH-HHhhcCChHHHHHHHH
Q 014945          246 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTV-GNIVTGDDMQTQCIIN  323 (415)
Q Consensus       246 l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~l-~nl~~~~~~~~~~~~~  323 (415)
                      +..+..++--+.+..++..+.......+..        .++.+..++.+ +++.+....+..+ +.+....+        
T Consensus        55 ~~~L~~~~~~E~r~~a~~ll~~~~~~~~~~--------~l~~~~~~~~~~~~Wd~vD~~~~~i~~~~~~~~~--------  118 (213)
T d2b6ca1          55 IEAYYQKTEREYQYVAIDLALQNVQRFSLE--------EVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLT--------  118 (213)
T ss_dssp             HHHHHTSSSHHHHHHHHHHHHHTGGGCCHH--------HHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGG--------
T ss_pred             HHHHHcCchHHHHHHHHHHHHHHHhccCHH--------HHHHHHHHHccCccHHHHHHHHHHHHHHHHHhhh--------
Confidence            334445566677777777766655433221        13444444443 4567776655544 34444333        


Q ss_pred             CCChHHHHHHhcCCCccchHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCHH
Q 014945          324 HQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNE  402 (415)
Q Consensus       324 ~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~  402 (415)
                       ...+.+.....++ +.-+|..|+.+...... ++.+.        ++..+..++.+++.-|++...|+|..++.. +++
T Consensus       119 -~~~~~l~~w~~s~-~~w~rR~aiv~~l~~~~~~~~~~--------~~~~~~~~~~d~e~~i~kAigW~Lre~~k~-~p~  187 (213)
T d2b6ca1         119 -ELPTIFALFYGAE-NFWNRRVALNLQLMLKEKTNQDL--------LKKAIIYDRTTEEFFIQKAIGWSLRQYSKT-NPQ  187 (213)
T ss_dssp             -GHHHHHHHHTTCS-SHHHHHHHHHTTTTCGGGCCHHH--------HHHHHHHTTTCCCHHHHHHHHHHHHHHTTT-CHH
T ss_pred             -hHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHcccHHH--------HHHHHHHhCCChHHHHHHHHHHHHHHHHHH-CHH
Confidence             2345677778888 88888877665543333 33332        244555667788899999999999999987 444


Q ss_pred             HHHHH
Q 014945          403 QIKYK  407 (415)
Q Consensus       403 ~~~~l  407 (415)
                      .+..+
T Consensus       188 ~v~~f  192 (213)
T d2b6ca1         188 WVEEL  192 (213)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44444

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=80.97  E-value=0.74  Score=33.44  Aligned_cols=74  Identities=12%  Similarity=0.089  Sum_probs=55.1

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhC
Q 014945           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS  144 (415)
Q Consensus        71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~  144 (415)
                      .++..|.+.|+++++.++..|+..|-.++...+......+...+++..|..++++.....++..++..+...+.
T Consensus        42 ~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  115 (145)
T d1dvpa1          42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY  115 (145)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            36677888889999999999999998887653223334455677888888888765437888888888876554

>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: B56-like
domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.25  E-value=1.6  Score=36.66  Aligned_cols=71  Identities=14%  Similarity=0.088  Sum_probs=44.3

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCC
Q 014945           73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASG  145 (415)
Q Consensus        73 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~  145 (415)
                      +..++..+.|.|+..|......++.+...  ....+..+...+...+.+++.......-....+++++.+..+
T Consensus       135 i~~Ll~lf~S~D~rER~~lk~~l~~iy~k--f~~~R~~Ir~~i~~if~~fi~e~~~~~gI~elLeil~sii~g  205 (343)
T d2jaka1         135 VLQLLELFDSEDPRERDFLKTTLHRIYGK--FLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIING  205 (343)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHh
Confidence            45667777788887777777777776543  344445555555666777665443234455666777766654