Citrus Sinensis ID: 014951

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-----
Protein Sequence
MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL
Secondary Structure (PSIPRED)
ccccccccccEEEEEccccHHHHHHHHHHHHcccEEEEccccccHHHHHHHHHHccccEEEEccccHHHHHHcccccccccEEEEEEccccHHHHHHHHHcccEEEEHHHHHHcccccccccccccccEEEEEEcccccccccHHHHccHHHHHHHHHHHHHHHHcccccccccEEEEEccHHHHHHHHHHHHHHHHccEEEEccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHccccEEEccccccccccccccccccccccccccccccEEEEEEEcccccccccccccccEEEEccccccHHcccccccccccccccccccccEEEEccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEEEcccHHHHHHHHHHHHcccEEEcccccccHHHEEEEEccccEEEEEEccHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHcccEEEEHHHHHHHccccccccccccccEEEEEEEccccccccEEEEccHHHHHHHHHHHHHHHHccccccHccEEEEHHHHHHHHHHHHHHHHHHHccEEEEccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccEEEEEEEccccccHHHHHHHHHHHccEEEEccccccccccEEEEccccccccccccccccccEEEEEEcccccccccccccccEEEEEcccEEEcccccHHHHHHHHHcccccccccccEccccc
Coil and Loop (DISEMBL)
mrsrgvnpgdrcgiygsncPEWIIAMEACNSqaityvplydtlgANAVEFIINHAEVSIAFVqenkipsilsclprcCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLqlgtldcelppkkktnistimytsgttgepkgvvlTNQAIVAEVLSVDQMFVVTGkvcseedtyfsflplahiYDQIIETHcihkgcsigfwrgDVRYLMEDIQElkptmfsgvprvydRIYTGIsnkissggaLSKKLFEFAYNYklgnmkkgmpqnkaapllDSLVFSKIREAFGGRLQAMlsgaaplpihVEEFlrvtsgapltqgygltescsgcfTSLADVFNmigtvgvpMTTVEARLesvpemgydalssvprgeiclrgntlfsgyykrpdlteevivdgwfhtgdigewqpmel
Flexible Loop (DISEMBL)
mrsrgvnpgdrcgiYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMytsgttgepkgVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQElkptmfsgvpRVYDRIYTGISnkissggalsKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGydalssvprgeicLRGNTLFSGYYKRPDLTEEVIVDGWFHTgdigewqpmel
Low Complexity Region (SEG)
MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL
Disordered region (IsUnstruct)
**********RCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANV*********ELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG****KAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEW*****
Disordered Region (DISOPRED)
MRSRGV*PGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQ*************TNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL
Disordered Region (DISEMBL)
********GDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANV***********GVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL
Disordered Region (DISPRO)
****GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPM**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	415	2.2.26 [Sep-21-2011]
Q9XIA9	665	Long chain acyl-CoA synth	yes	no	0.990	0.618	0.677	1e-170
Q9C7W4	665	Long chain acyl-CoA synth	no	no	0.992	0.619	0.573	1e-146
Q9T009	666	Long chain acyl-CoA synth	no	no	0.992	0.618	0.578	1e-142
Q9T0A0	666	Long chain acyl-CoA synth	no	no	0.992	0.618	0.571	1e-142
O22898	660	Long chain acyl-CoA synth	no	no	0.992	0.624	0.493	1e-115
Q8LPS1	701	Long chain acyl-CoA synth	no	no	0.961	0.569	0.422	3e-81
Q8LKS5	700	Long chain acyl-CoA synth	no	no	0.956	0.567	0.413	5e-81
Q1ZXQ4	673	Fatty acyl-CoA synthetase	yes	no	0.961	0.592	0.377	1e-77
Q55DR6	667	Fatty acyl-CoA synthetase	no	no	0.946	0.589	0.377	3e-72
P41216	699	Long-chain-fatty-acid--Co	yes	no	0.927	0.550	0.364	3e-69

>sp|Q9XIA9|LACS2_ARATH Long chain acyl-CoA synthetase 2 OS=Arabidopsis thaliana GN=LACS2 PE=2 SV=1

 Score =  598 bits (1541), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 280/413 (67%), Positives = 335/413 (81%), Gaps = 2/413 (0%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           +RSRGV+PG  CGIYG+NCPEWIIAMEAC SQ ITYVPLYD+LG NAVEFIINHAEVS+ 
Sbjct: 96  IRSRGVDPGHCCGIYGANCPEWIIAMEACMSQGITYVPLYDSLGVNAVEFIINHAEVSLV 155

Query: 61  FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLD-C 119
           FVQE  + SILSC   C   LKTIVSF  VSS+QK+EA+   VS FSW EF  +G LD  
Sbjct: 156 FVQEKTVSSILSCQKGCSSNLKTIVSFGEVSSTQKEEAKNQCVSLFSWNEFSLMGNLDEA 215

Query: 120 ELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSF 179
            LP K+KT+I TIMYTSGTTGEPKGV+L N AI  +VLS+D+M  VT + C   D +FS+
Sbjct: 216 NLPRKRKTDICTIMYTSGTTGEPKGVILNNAAISVQVLSIDKMLEVTDRSCDTSDVFFSY 275

Query: 180 LPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISN 239
           LPLAH YDQ++E + + +G S+G+WRGD+RYLM+D+Q LKPT+F GVPRVYD++Y GI  
Sbjct: 276 LPLAHCYDQVMEIYFLSRGSSVGYWRGDIRYLMDDVQALKPTVFCGVPRVYDKLYAGIMQ 335

Query: 240 KISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGA 299
           KIS+ G + KKLF+FAYNYKLGNM+KG  Q +A+P LD L+F KI+EA GGR   +LSGA
Sbjct: 336 KISASGLIRKKLFDFAYNYKLGNMRKGFSQEEASPRLDRLMFDKIKEALGGRAHMLLSGA 395

Query: 300 APLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESV 359
           APLP HVEEFLR+   + L+QGYGLTESC G FT+LA VF+M+GTVGVPM TVEARL SV
Sbjct: 396 APLPRHVEEFLRIIPASNLSQGYGLTESCGGSFTTLAGVFSMVGTVGVPMPTVEARLVSV 455

Query: 360 PEMGYDALSS-VPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQ 411
           PEMGYDA S+ VPRGEICLRGN++FSGY+KR DLT++V++DGWFHTGDIGEWQ
Sbjct: 456 PEMGYDAFSADVPRGEICLRGNSMFSGYHKRQDLTDQVLIDGWFHTGDIGEWQ 508

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Acts in the cutin pathway. Preferentially uses palmitate, palmitoleate, oleate and linoleate. Required for repression of lateral root formation through its role in cutin biosynthesis and subsequent aerial tissues permeability.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 3

>sp|Q9C7W4|LACS3_ARATH Long chain acyl-CoA synthetase 3 OS=Arabidopsis thaliana GN=LACS3 PE=2 SV=1

 Score =  518 bits (1333), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 237/413 (57%), Positives = 313/413 (75%), Gaps = 1/413 (0%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           +R+ GV  GD+CGIYG+N PEWII+MEACN+  +  VPLYDTLGA A+EFII HAEVS+A
Sbjct: 96  IRTIGVGKGDKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAIEFIICHAEVSLA 155

Query: 61  FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT-LDC 119
           F +ENKI  +L   P+   YLK IVSF  V+++Q+ EAE   ++ +SW++FL+LG     
Sbjct: 156 FAEENKISELLKTAPKSTKYLKYIVSFGEVTNNQRVEAERHRLTIYSWDQFLKLGEGKHY 215

Query: 120 ELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSF 179
           ELP K+++++ TIMYTSGTTG+PKGV+LTN++I+  +  V ++     +  + +D Y S+
Sbjct: 216 ELPEKRRSDVCTIMYTSGTTGDPKGVLLTNESIIHLLEGVKKLLKTIDEELTSKDVYLSY 275

Query: 180 LPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISN 239
           LPLAHI+D++IE  CI++  SIGFWRGDV+ L+EDI  LKPT+F  VPRV +RIYTG+  
Sbjct: 276 LPLAHIFDRVIEELCIYEAASIGFWRGDVKILIEDIAALKPTVFCAVPRVLERIYTGLQQ 335

Query: 240 KISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGA 299
           K+S GG + KKLF FA+ YK  NM+KG P  +A+P+ D +VF K++E  GG ++ +LSGA
Sbjct: 336 KLSDGGFVKKKLFNFAFKYKHKNMEKGQPHEQASPIADKIVFKKVKEGLGGNVRLILSGA 395

Query: 300 APLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESV 359
           APL  H+E FLRV + A + QGYGLTESC G F S+ +  +M+GTVG P+  V+ RLESV
Sbjct: 396 APLAAHIESFLRVVACAHVLQGYGLTESCGGTFVSIPNELSMLGTVGPPVPNVDIRLESV 455

Query: 360 PEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQP 412
           PEMGYDAL+S PRGEIC+RG TLFSGYYKR DLT+EV +DGW HTGD+GEWQP
Sbjct: 456 PEMGYDALASNPRGEICIRGKTLFSGYYKREDLTQEVFIDGWLHTGDVGEWQP 508

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9T009|LACS5_ARATH Long chain acyl-CoA synthetase 5 OS=Arabidopsis thaliana GN=LACS5 PE=2 SV=1

 Score =  506 bits (1303), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 239/413 (57%), Positives = 302/413 (73%), Gaps = 1/413 (0%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           +RS G+  G++CGIYG NC EWII+MEACN+  +  VPLYDTLGA AVEFII+HAEVSIA
Sbjct: 96  LRSCGIKEGEKCGIYGINCCEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHAEVSIA 155

Query: 61  FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT-LDC 119
           FV+E KIP +    P    Y+KT+VSF  V   QK+EAE+LG+   SW+EFL+LG     
Sbjct: 156 FVEEKKIPELFKTCPNSTKYMKTVVSFGGVKPEQKEEAEKLGLVIHSWDEFLKLGEGKQY 215

Query: 120 ELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSF 179
           ELP KK ++I TIMYTSGTTG+PKGV+++N++IV     V           SE+D Y S+
Sbjct: 216 ELPIKKPSDICTIMYTSGTTGDPKGVMISNESIVTITTGVMHFLGNVNASLSEKDVYISY 275

Query: 180 LPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISN 239
           LPLAH++D+ IE   I  G SIGFWRGDV+ L+ED+ ELKP++F  VPRV DR+YTG+  
Sbjct: 276 LPLAHVFDRAIEECIIQVGGSIGFWRGDVKLLIEDLGELKPSIFCAVPRVLDRVYTGLQQ 335

Query: 240 KISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGA 299
           K+S GG   KK+F+ A++YK GNMKKG     A+P  D LVF+K+++  GG ++ +LSGA
Sbjct: 336 KLSGGGFFKKKVFDVAFSYKFGNMKKGQSHVAASPFCDKLVFNKVKQGLGGNVRIILSGA 395

Query: 300 APLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESV 359
           APL  H+E FLRV +   + QGYGLTESC+G F +  D  +M+GTVG P+  V+ RLESV
Sbjct: 396 APLASHIESFLRVVACCNVLQGYGLTESCAGTFATFPDELDMLGTVGPPVPNVDIRLESV 455

Query: 360 PEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQP 412
           PEM YDAL S PRGEIC+RG TLFSGYYKR DLT+EV +DGW HTGD+GEWQP
Sbjct: 456 PEMNYDALGSTPRGEICIRGKTLFSGYYKREDLTKEVFIDGWLHTGDVGEWQP 508

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9T0A0|LACS4_ARATH Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana GN=LACS4 PE=2 SV=1

 Score =  504 bits (1298), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 236/413 (57%), Positives = 307/413 (74%), Gaps = 1/413 (0%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           +RS GV    +CGIYG+N PEWII+MEACN+  +  VPLYDTLGA+AVEFII+H+EVSI 
Sbjct: 96  LRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGADAVEFIISHSEVSIV 155

Query: 61  FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT-LDC 119
           FV+E KI  +    P    Y+KT+VSF  VS  QK+EAE  G+  ++W+EFL+LG     
Sbjct: 156 FVEEKKISELFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVIYAWDEFLKLGEGKQY 215

Query: 120 ELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSF 179
           +LP KKK++I TIMYTSGTTG+PKGV+++N++IV  +  V ++     +  + +D Y S+
Sbjct: 216 DLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANEALTVKDVYLSY 275

Query: 180 LPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISN 239
           LPLAHI+D++IE   I  G +IGFWRGDV+ L+ED+ ELKPT+F  VPRV DR+Y+G+  
Sbjct: 276 LPLAHIFDRVIEECFIQHGAAIGFWRGDVKLLIEDLAELKPTIFCAVPRVLDRVYSGLQK 335

Query: 240 KISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGA 299
           K+S GG L K +F+ A++YK G MKKG    +A+PL D LVFSK+++  GG ++ +LSGA
Sbjct: 336 KLSDGGFLKKFIFDSAFSYKFGYMKKGQSHVEASPLFDKLVFSKVKQGLGGNVRIILSGA 395

Query: 300 APLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESV 359
           APL  HVE FLRV +   + QGYGLTESC+G F SL D   M+GTVG P+  V+ RLESV
Sbjct: 396 APLASHVESFLRVVACCHVLQGYGLTESCAGTFVSLPDELGMLGTVGPPVPNVDIRLESV 455

Query: 360 PEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQP 412
           PEM YDAL+S  RGEIC+RG TLFSGYYKR DLT+EV++DGW HTGD+GEWQP
Sbjct: 456 PEMEYDALASTARGEICIRGKTLFSGYYKREDLTKEVLIDGWLHTGDVGEWQP 508

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|O22898|LACS1_ARATH Long chain acyl-CoA synthetase 1 OS=Arabidopsis thaliana GN=LACS1 PE=2 SV=1

 Score =  416 bits (1070), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 204/413 (49%), Positives = 267/413 (64%), Gaps = 1/413 (0%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           +R+ G  PG R GIYG NCP+WIIAMEAC +  +  VPLYDTLG+ AV++I+ HAE+   
Sbjct: 93  LRAAGAEPGSRVGIYGVNCPQWIIAMEACAAHTLICVPLYDTLGSGAVDYIVEHAEIDFV 152

Query: 61  FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE 120
           FVQ+ KI  +L    +C   LK IVSF NVS     +A E+GV  +SW +FL +G    E
Sbjct: 153 FVQDTKIKGLLEPDCKCAKRLKAIVSFTNVSDELSHKASEIGVKTYSWIDFLHMGREKPE 212

Query: 121 -LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSF 179
              P K  NI TIMYTSGT+G+PKGVVLT+QA+   V+ +D          + +D Y SF
Sbjct: 213 DTNPPKAFNICTIMYTSGTSGDPKGVVLTHQAVATFVVGMDLYMDQFEDKMTHDDVYLSF 272

Query: 180 LPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISN 239
           LPLAHI D++ E +   KG S+G++ G++  L +DIQELKPT  +GVPRV++RI+ GI  
Sbjct: 273 LPLAHILDRMNEEYFFRKGASVGYYHGNLNVLRDDIQELKPTYLAGVPRVFERIHEGIQK 332

Query: 240 KISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGA 299
            +       + +F   Y +KL  + +G   +KA+P+ D + F KIR+  GGR++ ++SG 
Sbjct: 333 ALQELNPRRRFIFNALYKHKLAWLNRGYSHSKASPMADFIAFRKIRDKLGGRIRLLVSGG 392

Query: 300 APLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESV 359
           APL   +EEFLRVT    + QGYGLTE+  G      D   M+GTVG+P    E RLE V
Sbjct: 393 APLSPEIEEFLRVTCCCFVVQGYGLTETLGGTALGFPDEMCMLGTVGIPAVYNEIRLEEV 452

Query: 360 PEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQP 412
            EMGYD L   P GEIC+RG  +FSGYYK P+LTEEV+ DGWFHTGDIGE  P
Sbjct: 453 SEMGYDPLGENPAGEICIRGQCMFSGYYKNPELTEEVMKDGWFHTGDIGEILP 505

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Acts in both the wax and cutin pathways. Preferentially uses palmitate, palmitoleate, linoleate and eicosenoate. Seems to have a specific activity against very long-chain fatty acid (VLCFA) class with acids longer than 24 carbons (C(24)).

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q8LPS1|LACS6_ARATH Long chain acyl-CoA synthetase 6, peroxisomal OS=Arabidopsis thaliana GN=LACS6 PE=1 SV=1

 Score =  302 bits (774), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 174/412 (42%), Positives = 239/412 (58%), Gaps = 13/412 (3%)

Query: 4   RGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQ 63
            G+  G   GIY  N PEW+I   AC+S +   VPLYDTLG +AV+FI+NHA V   F  
Sbjct: 138 HGIPMGSSVGIYFINRPEWLIVDHACSSYSYVSVPLYDTLGPDAVKFIVNHATVQAIFCV 197

Query: 64  ENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE-LP 122
              + S+LSCL         +V    + S     +   GV   S+   L  G  + +   
Sbjct: 198 AETLNSLLSCLSEMPSVRLVVVVGGLIESLPSLPSSS-GVKVVSYSVLLNQGRSNPQRFF 256

Query: 123 PKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL 182
           P K  +++TI YTSGTTG PKGVVLT+  ++A V                 D Y S+LPL
Sbjct: 257 PPKPDDVATICYTSGTTGTPKGVVLTHANLIANVAGSSFS-----VKFFSSDVYISYLPL 311

Query: 183 AHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKIS 242
           AHIY++  +   ++ G ++GF++GD   L++D+  L+PT+FS VPR+Y+RIY GI N + 
Sbjct: 312 AHIYERANQILTVYFGVAVGFYQGDNMKLLDDLAALRPTVFSSVPRLYNRIYAGIINAVK 371

Query: 243 SGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPL 302
           + G L ++LF  AYN K   +  G     A+P+ D LVF+KI++  GGR++ M SGA+PL
Sbjct: 372 TSGGLKERLFNAAYNAKKQALLNG---KSASPIWDRLVFNKIKDRLGGRVRFMTSGASPL 428

Query: 303 PIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEM 362
              V EFL+V  G  +T+GYG+TE+ S   + + +  N+ G VG P    E +L  VPEM
Sbjct: 429 SPEVMEFLKVCFGGRVTEGYGMTET-SCVISGMDEGDNLTGHVGSPNPACEVKLVDVPEM 487

Query: 363 GY-DALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQP 412
            Y  A    PRGEIC+RG  +F+GYYK    T+EVI  DGW HTGDIG W P
Sbjct: 488 NYTSADQPHPRGEICVRGPIIFTGYYKDEIQTKEVIDEDGWLHTGDIGLWLP 539

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Might play a regulatory role both in fatty acid import into glyoxysomes and in fatty acid beta-oxidation. Displays redundant function with LACS7 into the seed development process.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q8LKS5|LACS7_ARATH Long chain acyl-CoA synthetase 7, peroxisomal OS=Arabidopsis thaliana GN=LACS7 PE=1 SV=2

 Score =  301 bits (772), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 171/414 (41%), Positives = 240/414 (57%), Gaps = 17/414 (4%)

Query: 4   RGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQ 63
            GVN GD  G+Y  N PEW++   AC + +   VPLYDTLG +AV+F++NHA +   F  
Sbjct: 138 HGVNQGDCVGLYFINRPEWLVVDHACAAYSFVSVPLYDTLGPDAVKFVVNHANLQAIFCV 197

Query: 64  ENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE-LP 122
              +  +LS L      ++ IV                GV+  S+++ L  G        
Sbjct: 198 PQTLNILLSFLAEIP-SIRLIVVVGGADEHLPSLPRGTGVTIVSYQKLLSQGRSSLHPFS 256

Query: 123 PKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVL--SVDQMFVVTGKVCSEEDTYFSFL 180
           P K  +I+TI YTSGTTG PKGVVLT+  ++A V   SV+  F  +       D Y S+L
Sbjct: 257 PPKPEDIATICYTSGTTGTPKGVVLTHGNLIANVAGSSVEAEFFPS-------DVYISYL 309

Query: 181 PLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNK 240
           PLAHIY++  +   ++ G ++GF++GDV  LM+D   L+PT+F  VPR+Y+RIY GI++ 
Sbjct: 310 PLAHIYERANQIMGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIYDGITSA 369

Query: 241 ISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAA 300
           + S G + K+LFE AYN K   +  G      +   D LVF+KI+E  GGR++ M SGA+
Sbjct: 370 VKSSGVVKKRLFEIAYNSKKQAIING---RTPSAFWDKLVFNKIKEKLGGRVRFMGSGAS 426

Query: 301 PLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVP 360
           PL   V +FLR+  G  + +GYG+TE+ S   +++ D  N+ G VG P    E +L  VP
Sbjct: 427 PLSPDVMDFLRICFGCSVREGYGMTET-SCVISAMDDGDNLSGHVGSPNPACEVKLVDVP 485

Query: 361 EMGYDALSS-VPRGEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHTGDIGEWQP 412
           EM Y +     PRGEIC+RG  +F GYYK  + T E++  DGW HTGDIG W P
Sbjct: 486 EMNYTSDDQPYPRGEICVRGPIIFKGYYKDEEQTREILDGDGWLHTGDIGLWLP 539

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Displays redundant function with LACS7 into the seed development process.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q1ZXQ4|FCSB_DICDI Fatty acyl-CoA synthetase B OS=Dictyostelium discoideum GN=fcsB PE=2 SV=1

 Score =  290 bits (742), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 155/411 (37%), Positives = 236/411 (57%), Gaps = 12/411 (2%)

Query: 5   GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE 64
           G+ P  + GI+  N  EW+I   A   Q+   V  Y+TLG  ++ ++  HAE+ +AF   
Sbjct: 119 GLKPKSKVGIFSKNRLEWLIVHSASFIQSYCVVSFYETLGVESLSYVTEHAEIGLAFCSA 178

Query: 65  NKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT----LDCE 120
             +   L  + +    LKTI+ F ++       A+ELGV+ ++++E ++ G         
Sbjct: 179 ETLQKTLD-IAKGVKVLKTIICFDSIDKEHYNIAKELGVTLYTYDEIMKKGKEANGKHKH 237

Query: 121 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 180
            PP   T +STIMYTSGTTG PKGV++T++ + + V +V     V      + D ++S+L
Sbjct: 238 TPPTPDT-LSTIMYTSGTTGPPKGVMITHKNLTSVVCAVSDFIKVY-----DTDVHYSYL 291

Query: 181 PLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNK 240
           P AH+ ++++     H G +IG + GD+  ++ +++ L PT+F GVPRV++RI T +  +
Sbjct: 292 PYAHVLERVVILAAFHFGAAIGIFSGDISNILVEVKLLSPTLFIGVPRVFERIKTNVFKE 351

Query: 241 ISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAA 300
           IS   AL + LF  AYN K  +++ G        +LD + FSKI++A GG+++ +LSG+A
Sbjct: 352 ISKKPALLRTLFNGAYNLKYLSIQHGFKLPIIEKVLDLVFFSKIKQALGGKVRVILSGSA 411

Query: 301 PLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVP 360
           PL    E FLRV     + QGYG +E C G      D    +GT+G P  + E +L  VP
Sbjct: 412 PLSFDTEVFLRVVMCCCVLQGYGASEGCGGDACKRLDD-ESVGTIGPPFASNEIKLVDVP 470

Query: 361 EMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQ 411
           E+GYD+   V  GE+CLRG ++ SGYYK  + T E   DGWFHTGDIG W 
Sbjct: 471 ELGYDSNGEVQTGEVCLRGPSISSGYYKDEEKTREEFKDGWFHTGDIGRWN 521

Long chain fatty acid acyl-CoA synthetases catalyze the formation of a thiester bond between a free fatty acid and coenzyme A during fatty acid metabolic process.

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q55DR6|FCSA_DICDI Fatty acyl-CoA synthetase A OS=Dictyostelium discoideum GN=fcsA PE=1 SV=1

 Score =  272 bits (696), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 156/413 (37%), Positives = 243/413 (58%), Gaps = 20/413 (4%)

Query: 5   GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE 64
           G+N GDR GI+  N PEW+++  A  + ++  V LY TLGANA+E+++NH+E+S+   + 
Sbjct: 108 GLNKGDRIGIFSINRPEWVLSDMAAMNHSLVPVALYATLGANAIEYVVNHSEISVLLCEG 167

Query: 65  NKIPSILSCLPRCCLYLKTIVSFANV-SSSQKKEAEELGVSCFSWEEFLQLGTLD---CE 120
             +  ILS +P     +KTIVS+  +  ++  K  +   V  +   +F +LG  +    E
Sbjct: 168 KNVEKILS-MPGTT--IKTIVSYDPLPQATLDKFKDNENVKLYLLSDFEKLGEQNPAQHE 224

Query: 121 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 180
           +P  +  ++ T++YTSG+TG PKGV+LT+  +V+EV   +  F   G +   ED + S+L
Sbjct: 225 VPSPE--DLCTLLYTSGSTGNPKGVMLTHTNMVSEVAGAN--FSPAGVI--PEDVHMSYL 278

Query: 181 PLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNK 240
           PLAH +++ + +   + G  IGF+ G +  L  DIQ L+PT   G PRV+ R++  +   
Sbjct: 279 PLAHSFERAVVSLMCYVGGQIGFFSGLIPELFNDIQVLRPTFLCGAPRVWQRLHDKLWFT 338

Query: 241 ISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAA 300
           +++   L K LF +  N K   ++ G       P+ D LVFSK ++  GGR++ +LSG+A
Sbjct: 339 VNNDSWLKKFLFNWGLNSKQSALRLG----STTPIWDKLVFSKTKDRLGGRVKFILSGSA 394

Query: 301 PLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVP 360
           PL   + EFLR     P+  GYGL+E+  G   +  +  N +G VG P++  E +L  VP
Sbjct: 395 PLDPKLAEFLRACFCCPVVSGYGLSENVGGASVAYPED-NNVGHVGPPLSACEMKLIDVP 453

Query: 361 EMGYDALSS-VPRGEICLRGNTLFSGYYKRPDLT-EEVIVDGWFHTGDIGEWQ 411
           EM Y +     PRGE+C+RG  +F GY+K P+ T E++  DGWFHTGDIG W 
Sbjct: 454 EMNYFSTDKPCPRGEVCIRGFNVFKGYFKDPEKTKEDLKEDGWFHTGDIGRWN 506

Long chain fatty acid acyl-CoA synthetases catalyze the formation of a thiester bond between a free fatty acid and coenzyme A during fatty acid metabolic process. May mediate fatty acid retrieval from the lumen of endosomes into the cytoplasm.

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|P41216|ACSL1_MOUSE Long-chain-fatty-acid--CoA ligase 1 OS=Mus musculus GN=Acsl1 PE=1 SV=2

 Score =  263 bits (671), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 150/411 (36%), Positives = 237/411 (57%), Gaps = 26/411 (6%)

Query: 13  GIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSIL- 71
           G++  N PEW+I  + C S ++  VPLYDTLGA+A+ +I+N AE+S+ F  + +   +L 
Sbjct: 152 GLFSQNRPEWVIVEQGCFSYSMVVVPLYDTLGADAITYIVNKAELSVIFADKPEKAKLLL 211

Query: 72  ----SCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP-PKKK 126
               + L  C   LK IV   +  S   +  ++ GV   S +    LG ++   P P + 
Sbjct: 212 EGVENKLTPC---LKIIVIMDSYGSDLVERGKKCGVEIISLKALEDLGRVNRVKPKPPEP 268

Query: 127 TNISTIMYTSGTTGEPKGVVLTNQAIVAE----VLSVDQMFVVTGKVCSEEDTYFSFLPL 182
            +++ I +TSGTTG PKG ++T+Q I+ +    + + +  F+      S +D   SFLPL
Sbjct: 269 EDLAIICFTSGTTGNPKGAMITHQNIINDCSGFIKATESAFI-----ASTDDVLISFLPL 323

Query: 183 AHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKIS 242
           AH+++ ++E   +  G  IGF++GD+R LM+D++ L+PT+F  VPR+ +R++  I  + +
Sbjct: 324 AHMFETVVECVMLCHGAKIGFFQGDIRLLMDDLKVLQPTIFPVVPRLLNRMFDRIFGQAN 383

Query: 243 SGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPL 302
           +  +L + L +FA   K   ++ G+ +N +  L D L+F KI+ + GG+++ M++GAAP+
Sbjct: 384 T--SLKRWLLDFASKRKEAELRSGIVRNNS--LWDKLIFHKIQSSLGGKVRLMITGAAPV 439

Query: 303 PIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEM 362
              V  FLR   G    +GYG TE  +GC  SL   +   G VG PM     +L  V EM
Sbjct: 440 SATVLTFLRTALGCQFYEGYGQTECTAGCCLSLPGDWTA-GHVGAPMPCNYVKLVDVEEM 498

Query: 363 GYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQP 412
            Y  L+S   GE+C++G  +F GY K P  T E +  DGW HTGDIG+W P
Sbjct: 499 NY--LASKGEGEVCVKGANVFKGYLKDPARTAEALDKDGWLHTGDIGKWLP 547

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses oleate, arachidonate, eicosapentaenoate and docosahexaenoate as substrates.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	415
224103487	658	predicted protein [Populus trichocarpa]	0.992	0.626	0.793	0.0
449474962	661	PREDICTED: long chain acyl-CoA synthetas	0.992	0.623	0.791	0.0
449455210	661	PREDICTED: long chain acyl-CoA synthetas	0.992	0.623	0.791	0.0
449526942	629	PREDICTED: long chain acyl-CoA synthetas	0.992	0.655	0.791	0.0
225428594	659	PREDICTED: long chain acyl-CoA synthetas	0.992	0.625	0.774	0.0
356544492	656	PREDICTED: long chain acyl-CoA synthetas	0.990	0.626	0.764	0.0
255556171	660	acyl CoA synthetase, putative [Ricinus c	0.987	0.621	0.764	0.0
356541119	656	PREDICTED: long chain acyl-CoA synthetas	0.990	0.626	0.762	0.0
356575070	660	PREDICTED: long chain acyl-CoA synthetas	0.990	0.622	0.756	0.0
356523415	660	PREDICTED: long chain acyl-CoA synthetas	0.990	0.622	0.754	0.0

>gi|224103487|ref|XP_002313075.1| predicted protein [Populus trichocarpa] gi|222849483|gb|EEE87030.1| predicted protein [Populus trichocarpa]

 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/412 (79%), Positives = 370/412 (89%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           MR RGVNPGDRCGIYGSNCPEWI AMEAC+SQAITYVPLYDTLG NAVEFIINHAEVSIA
Sbjct: 92  MRRRGVNPGDRCGIYGSNCPEWITAMEACDSQAITYVPLYDTLGPNAVEFIINHAEVSIA 151

Query: 61  FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE 120
           FVQENK+ SILSCLP+C   LKTIVSF  +S  QKKEA+ELGVSCFSWEEF QLG+LDCE
Sbjct: 152 FVQENKLSSILSCLPKCSSNLKTIVSFGKISDMQKKEADELGVSCFSWEEFPQLGSLDCE 211

Query: 121 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 180
           LPPK KT++ TIMYTSGTTGEPKGV+LTN A+VAEVLSVDQ+  +T +V +EED+YFSFL
Sbjct: 212 LPPKHKTDVCTIMYTSGTTGEPKGVILTNGALVAEVLSVDQLLFLTDRVAAEEDSYFSFL 271

Query: 181 PLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNK 240
           PLAH+YDQ+IET+CI+KG SIGFW+GDVRYLMEDIQELKP++F GVPRVYDRIYTG   K
Sbjct: 272 PLAHVYDQVIETYCIYKGASIGFWQGDVRYLMEDIQELKPSIFCGVPRVYDRIYTGTLAK 331

Query: 241 ISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAA 300
           +S+GG L KKLF+FAYNYKLG ++KG PQ KAAPLLD LVF K ++A GGR++ +LSGAA
Sbjct: 332 VSAGGGLKKKLFDFAYNYKLGYLEKGFPQEKAAPLLDRLVFDKTKQALGGRVRILLSGAA 391

Query: 301 PLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVP 360
           PLP HVEEFLRVTS + L+QGYGLTESC GCFTS+ +V+ M+GTVGVPMTT+E+RLESVP
Sbjct: 392 PLPKHVEEFLRVTSCSTLSQGYGLTESCGGCFTSIGNVYPMVGTVGVPMTTIESRLESVP 451

Query: 361 EMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQP 412
           EMGYDALSSVPRGEICLRG+TLFSGY+KR DLT EV+VDGWFHTGDIGEWQP
Sbjct: 452 EMGYDALSSVPRGEICLRGSTLFSGYHKREDLTNEVLVDGWFHTGDIGEWQP 503

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449474962|ref|XP_004154333.1| PREDICTED: long chain acyl-CoA synthetase 2-like [Cucumis sativus]

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/412 (79%), Positives = 373/412 (90%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           +R RGVN GDRCGIYGSNCPEWII+MEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA
Sbjct: 95  IRKRGVNSGDRCGIYGSNCPEWIISMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 154

Query: 61  FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE 120
           FVQENK+ SI SCLPRC   LKTIVSF NVSS  KKEAEELGVSCFSWEEF QLG+LDCE
Sbjct: 155 FVQENKLASIFSCLPRCSNQLKTIVSFTNVSSVLKKEAEELGVSCFSWEEFCQLGSLDCE 214

Query: 121 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 180
           LP K+KT+I TIMYTSGTTGEPKGV+L N A++AEVLSV+ + ++T KV +EED+YFSFL
Sbjct: 215 LPSKQKTDICTIMYTSGTTGEPKGVILNNTAVMAEVLSVEHLLLLTDKVATEEDSYFSFL 274

Query: 181 PLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNK 240
           PLAH+YDQI+ET+CI+KG SIGFWRGD+R+L++DIQELKPT+FSGVPRVYDRIY+GI NK
Sbjct: 275 PLAHVYDQIMETYCIYKGSSIGFWRGDIRFLLDDIQELKPTIFSGVPRVYDRIYSGILNK 334

Query: 241 ISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAA 300
           +SSGG+L K LF++AY YKLG +KKG+ Q KAAPLLD LVF KI+EAFGGR++  LSGAA
Sbjct: 335 VSSGGSLRKMLFDYAYIYKLGYLKKGLLQEKAAPLLDKLVFDKIKEAFGGRVRLFLSGAA 394

Query: 301 PLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVP 360
           PLP HVEEFLRVTS A L+QGYGLTESC GCFTS+A+VF M+GTVGVP+TT+EARLESVP
Sbjct: 395 PLPRHVEEFLRVTSCATLSQGYGLTESCGGCFTSIANVFTMMGTVGVPVTTIEARLESVP 454

Query: 361 EMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQP 412
           +MGYDAL++ PRGEICLRG+TLFSGY+KR DLT EV++DGWFHTGDIGEWQP
Sbjct: 455 DMGYDALATTPRGEICLRGSTLFSGYHKRQDLTGEVLIDGWFHTGDIGEWQP 506

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455210|ref|XP_004145346.1| PREDICTED: long chain acyl-CoA synthetase 2-like [Cucumis sativus]

 Score =  700 bits (1807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/412 (79%), Positives = 373/412 (90%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           +R RGVN GDRCGIYGSNCPEWII+MEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA
Sbjct: 95  IRKRGVNSGDRCGIYGSNCPEWIISMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 154

Query: 61  FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE 120
           FVQENK+ SI SCLPRC   LKTIVSF NVSS  KKEAEELGVSCFSWEEF QLG+LDCE
Sbjct: 155 FVQENKLASIFSCLPRCSNQLKTIVSFTNVSSVLKKEAEELGVSCFSWEEFCQLGSLDCE 214

Query: 121 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 180
           LP K+KT+I TIMYTSGTTGEPKGV+L N A++AEVLSV+ + ++T KV +EED+YFSFL
Sbjct: 215 LPSKQKTDICTIMYTSGTTGEPKGVILNNTAVMAEVLSVEHLLLLTDKVATEEDSYFSFL 274

Query: 181 PLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNK 240
           PLAH+YDQI+ET+CI+KG SIGFWRGD+R+L++DIQELKPT+FSGVPRVYDRIY+GI NK
Sbjct: 275 PLAHVYDQIMETYCIYKGSSIGFWRGDIRFLLDDIQELKPTIFSGVPRVYDRIYSGILNK 334

Query: 241 ISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAA 300
           +SSGG+L K LF++AY YKLG +KKG+ Q KAAPLLD LVF KI+EAFGGR++  LSGAA
Sbjct: 335 VSSGGSLRKMLFDYAYIYKLGYLKKGLLQEKAAPLLDKLVFDKIKEAFGGRVRLFLSGAA 394

Query: 301 PLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVP 360
           PLP HVEEFLRVTS A L+QGYGLTESC GCFTS+A+VF M+GTVGVP+TT+EARLESVP
Sbjct: 395 PLPRHVEEFLRVTSCATLSQGYGLTESCGGCFTSIANVFTMMGTVGVPVTTIEARLESVP 454

Query: 361 EMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQP 412
           +MGYDAL++ PRGEICLRG+TLFSGY+KR DLT EV++DGWFHTGDIGEWQP
Sbjct: 455 DMGYDALATTPRGEICLRGSTLFSGYHKRQDLTGEVLIDGWFHTGDIGEWQP 506

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449526942|ref|XP_004170472.1| PREDICTED: long chain acyl-CoA synthetase 2-like [Cucumis sativus]

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/412 (79%), Positives = 373/412 (90%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           +R RGVN GDRCGIYGSNCPEWII+MEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA
Sbjct: 63  IRKRGVNSGDRCGIYGSNCPEWIISMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 122

Query: 61  FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE 120
           FVQENK+ SI SCLPRC   LKTIVSF NVSS  KKEAEELGVSCFSWEEF QLG+LDCE
Sbjct: 123 FVQENKLASIFSCLPRCSNQLKTIVSFTNVSSVLKKEAEELGVSCFSWEEFCQLGSLDCE 182

Query: 121 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 180
           LP K+KT+I TIMYTSGTTGEPKGV+L N A++AEVLSV+ + ++T KV +EED+YFSFL
Sbjct: 183 LPSKQKTDICTIMYTSGTTGEPKGVILNNTAVMAEVLSVEHLLLLTDKVATEEDSYFSFL 242

Query: 181 PLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNK 240
           PLAH+YDQI+ET+CI+KG SIGFWRGD+R+L++DIQELKPT+FSGVPRVYDRIY+GI NK
Sbjct: 243 PLAHVYDQIMETYCIYKGSSIGFWRGDIRFLLDDIQELKPTIFSGVPRVYDRIYSGILNK 302

Query: 241 ISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAA 300
           +SSGG+L K LF++AY YKLG +KKG+ Q KAAPLLD LVF KI+EAFGGR++  LSGAA
Sbjct: 303 VSSGGSLRKMLFDYAYIYKLGYLKKGLLQEKAAPLLDKLVFDKIKEAFGGRVRLFLSGAA 362

Query: 301 PLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVP 360
           PLP HVEEFLRVTS A L+QGYGLTESC GCFTS+A+VF M+GTVGVP+TT+EARLESVP
Sbjct: 363 PLPRHVEEFLRVTSCATLSQGYGLTESCGGCFTSIANVFTMMGTVGVPVTTIEARLESVP 422

Query: 361 EMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQP 412
           +MGYDAL++ PRGEICLRG+TLFSGY+KR DLT EV++DGWFHTGDIGEWQP
Sbjct: 423 DMGYDALATTPRGEICLRGSTLFSGYHKRQDLTGEVLIDGWFHTGDIGEWQP 474

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428594|ref|XP_002281151.1| PREDICTED: long chain acyl-CoA synthetase 2 [Vitis vinifera] gi|297741400|emb|CBI32531.3| unnamed protein product [Vitis vinifera]

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/412 (77%), Positives = 367/412 (89%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAI YVPLYD+LGANAVEFIINHAEVSIA
Sbjct: 93  MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAIPYVPLYDSLGANAVEFIINHAEVSIA 152

Query: 61  FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE 120
           FVQE+KIP++L+CLP+C  YLKTI+SF  +SSSQK+EAEELGVSCFSWEEF  LG+LDCE
Sbjct: 153 FVQESKIPAMLTCLPKCTSYLKTIISFGKISSSQKEEAEELGVSCFSWEEFALLGSLDCE 212

Query: 121 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 180
           LPPK+KT+I TIMYTSGTTGEPKGVVL+N+AI+AEVLS DQ+ + T KV +EEDTYFSFL
Sbjct: 213 LPPKQKTDICTIMYTSGTTGEPKGVVLSNEAIMAEVLSTDQLLLETDKVATEEDTYFSFL 272

Query: 181 PLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNK 240
           PLAH++DQI+ET+CI+KG SIGFW  DVRYLMEDIQELKPT+F GVPRVY+RIY G   K
Sbjct: 273 PLAHVFDQIMETYCIYKGSSIGFWGADVRYLMEDIQELKPTIFCGVPRVYERIYGGAIAK 332

Query: 241 ISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAA 300
           ISSGGAL K LF++AYNYKL N++KG+ Q++AAP LD L+F KI++ FGGR++ + SGAA
Sbjct: 333 ISSGGALRKALFQYAYNYKLRNLEKGLRQDEAAPRLDRLIFDKIKQGFGGRVRLLFSGAA 392

Query: 301 PLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVP 360
           PL  HVEEFLRVTS + L+QGYGLTESC GC TS+ + F+M+GTVGVP  T+EARLESVP
Sbjct: 393 PLSRHVEEFLRVTSCSVLSQGYGLTESCGGCLTSIVNEFSMMGTVGVPYPTIEARLESVP 452

Query: 361 EMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQP 412
           EMGYDALS+VPRGEICLRG TLFSGY+KR DLTE  +VDGWFHTGDIGEWQP
Sbjct: 453 EMGYDALSNVPRGEICLRGKTLFSGYFKRQDLTESALVDGWFHTGDIGEWQP 504

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544492|ref|XP_003540684.1| PREDICTED: long chain acyl-CoA synthetase 2-like [Glycine max]

 Score =  683 bits (1762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/412 (76%), Positives = 367/412 (89%), Gaps = 1/412 (0%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           MRSR VNPGDRCGIYGSNCPEWIIAMEACNS A+TYVPLYDTLG NAVEFIINHAEVSIA
Sbjct: 94  MRSRDVNPGDRCGIYGSNCPEWIIAMEACNSYAVTYVPLYDTLGPNAVEFIINHAEVSIA 153

Query: 61  FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE 120
           FVQ+NK PS+LSCL RC   LKT+VSF NVS++QKKEAEELG SCFSWEEFLQLG +D +
Sbjct: 154 FVQDNKFPSVLSCLDRCS-SLKTVVSFGNVSTTQKKEAEELGASCFSWEEFLQLGNMDLD 212

Query: 121 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 180
           LP K KTNI TIMYTSGTTGEPKGV++ N+A + +VLS+DQ+  +T +V +E+D YFSFL
Sbjct: 213 LPLKNKTNICTIMYTSGTTGEPKGVIIKNEAFMTQVLSIDQILNLTDRVGTEDDVYFSFL 272

Query: 181 PLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNK 240
           PLAH+YDQI+ET+CI+KG SIGFW+GDVR+LMEDIQ LKPT+F  VPRVYDR+Y GIS+K
Sbjct: 273 PLAHVYDQIMETYCIYKGSSIGFWQGDVRFLMEDIQALKPTLFCAVPRVYDRVYAGISSK 332

Query: 241 ISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAA 300
           ISSGGAL   LF++AYNYKLG ++KG+PQ+KAAPL D LVF KI++A GGR++ +LSGAA
Sbjct: 333 ISSGGALQSTLFQYAYNYKLGYLEKGLPQDKAAPLFDKLVFDKIKQALGGRVRLLLSGAA 392

Query: 301 PLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVP 360
           PLP HVEEFLRVT GA ++QGYGLTESC GCFT++++VF+M+GT+GVPMTT+E+RLESVP
Sbjct: 393 PLPRHVEEFLRVTFGATMSQGYGLTESCGGCFTAISNVFSMMGTIGVPMTTIESRLESVP 452

Query: 361 EMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQP 412
           EMGYDALSS  RGEICLRGNTLFSGY+K  DLTEEV+VDGWFHTGDIGEWQP
Sbjct: 453 EMGYDALSSEARGEICLRGNTLFSGYHKHQDLTEEVMVDGWFHTGDIGEWQP 504

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556171|ref|XP_002519120.1| acyl CoA synthetase, putative [Ricinus communis] gi|223541783|gb|EEF43331.1| acyl CoA synthetase, putative [Ricinus communis]

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/412 (76%), Positives = 362/412 (87%), Gaps = 2/412 (0%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           MRSRG+NPGDRCGIYGSNCPEWI AMEAC S AIT+VPLYDTLG NAVEFI+NHAEVS+A
Sbjct: 96  MRSRGLNPGDRCGIYGSNCPEWITAMEACKSHAITFVPLYDTLGPNAVEFIVNHAEVSLA 155

Query: 61  FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE 120
           FVQE+K+ SIL+CLP+C  YLK+  +F +VS+ QKKEAEELG SCFSWEEF QLG+LDCE
Sbjct: 156 FVQESKLSSILACLPKCSSYLKS--NFGSVSAMQKKEAEELGASCFSWEEFCQLGSLDCE 213

Query: 121 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 180
           LP K K +I TIMYTSGTTGEPKGV+LTN AI+AEVLSVD +  +T +  +EED+YFSFL
Sbjct: 214 LPAKHKGDICTIMYTSGTTGEPKGVLLTNGAIMAEVLSVDHLLFLTDRAATEEDSYFSFL 273

Query: 181 PLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNK 240
           PLAH+YDQ+IET+CI KG SIGFWRGDVR+L+ED Q LKP++F GVPRVYDRIYTG   K
Sbjct: 274 PLAHVYDQVIETYCIQKGASIGFWRGDVRFLLEDAQALKPSIFCGVPRVYDRIYTGTMQK 333

Query: 241 ISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAA 300
           ISSGGAL KKLF+FAY+YKLGN++KG+PQ +AAPLLD LVF K ++  GGR++ MLSGAA
Sbjct: 334 ISSGGALRKKLFDFAYSYKLGNLQKGLPQAQAAPLLDRLVFEKTKQTLGGRVRIMLSGAA 393

Query: 301 PLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVP 360
           PLP HVEEFLRVTS + L+QGYGLTESC GC TS+ DVF M+GTVGVPMTT+E RLESVP
Sbjct: 394 PLPKHVEEFLRVTSCSTLSQGYGLTESCGGCLTSIGDVFPMVGTVGVPMTTIEVRLESVP 453

Query: 361 EMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQP 412
           EMGYDALSSVPRGEICLRGNTLFSGY+KR DLT+EV++DGWFHTGDIGE QP
Sbjct: 454 EMGYDALSSVPRGEICLRGNTLFSGYHKREDLTKEVLIDGWFHTGDIGELQP 505

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541119|ref|XP_003539030.1| PREDICTED: long chain acyl-CoA synthetase 2-like [Glycine max]

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/412 (76%), Positives = 366/412 (88%), Gaps = 1/412 (0%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           MRSRGVNPG RCGIYGSNCPEWIIAM+ACNS A+TYVPLYDTLG NAVEFIINHAEVSIA
Sbjct: 94  MRSRGVNPGYRCGIYGSNCPEWIIAMQACNSYAVTYVPLYDTLGPNAVEFIINHAEVSIA 153

Query: 61  FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE 120
           FVQ++KIPS+LSCL R    LKTIVSF NVS++QKKEAEELG SCFSWEEFLQ+G +D +
Sbjct: 154 FVQDSKIPSVLSCLDRWS-SLKTIVSFGNVSTTQKKEAEELGASCFSWEEFLQMGNIDLD 212

Query: 121 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 180
           LPPKKKTNI TIMYTSGTTGEPKGV++ N+A + +VLS+DQ+  +T +V +E+D YFSFL
Sbjct: 213 LPPKKKTNICTIMYTSGTTGEPKGVIIKNEAFMTQVLSIDQILNLTDRVGTEDDVYFSFL 272

Query: 181 PLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNK 240
           PLAH+YDQI+ET+CI+KG SIGFW+GDV +LMEDI  LKPT+F GVPRVYDR+Y  IS+K
Sbjct: 273 PLAHVYDQIMETYCIYKGSSIGFWQGDVGFLMEDILALKPTLFCGVPRVYDRVYACISSK 332

Query: 241 ISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAA 300
           ISSGGAL   LF++AYNYKLG ++KG+PQ+KAAPL D LVF KI++A GGR++ +LSGAA
Sbjct: 333 ISSGGALQSTLFQYAYNYKLGYLEKGLPQDKAAPLFDKLVFDKIKQALGGRVRLLLSGAA 392

Query: 301 PLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVP 360
           PLP HVEEFLRVT GA ++QGYGLTESC GCFT +++VF+M+GT+GVPMTT+EARLESVP
Sbjct: 393 PLPRHVEEFLRVTFGATMSQGYGLTESCGGCFTGISNVFSMMGTIGVPMTTIEARLESVP 452

Query: 361 EMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQP 412
           EMGYDALSS  RGEICLRGNTLFSGY+K  DLTEEV+VDGWFHTGDIGEWQP
Sbjct: 453 EMGYDALSSEARGEICLRGNTLFSGYHKHQDLTEEVMVDGWFHTGDIGEWQP 504

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575070|ref|XP_003555665.1| PREDICTED: long chain acyl-CoA synthetase 2-like [Glycine max]

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/411 (75%), Positives = 362/411 (88%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           +RSRGVNPGDRCGIYGSNCPEWIIAMEACNS A++YVPLYDTLG NAVEFIINHAEVSIA
Sbjct: 94  IRSRGVNPGDRCGIYGSNCPEWIIAMEACNSCAVSYVPLYDTLGPNAVEFIINHAEVSIA 153

Query: 61  FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE 120
           FVQE KIPS+LSCL +C   LKTIVSF +VS++QKKEAE  G SCFSW EFLQLG LD +
Sbjct: 154 FVQEKKIPSVLSCLAQCSSNLKTIVSFGSVSTTQKKEAEGHGASCFSWGEFLQLGCLDWD 213

Query: 121 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 180
           LP KKKT+I TIMYTSGTTG+PKGVV+ N+A +AEVLSVD + ++T +V  E+D YFSFL
Sbjct: 214 LPSKKKTDICTIMYTSGTTGDPKGVVIKNEAFMAEVLSVDHIIMLTDRVAGEDDVYFSFL 273

Query: 181 PLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNK 240
           PLAH+YDQI+ET+CI KG SIGFW+GDVR+L+EDIQELKPT+F GVPRV+DRIY GI +K
Sbjct: 274 PLAHVYDQIMETYCISKGSSIGFWQGDVRFLLEDIQELKPTIFCGVPRVFDRIYAGIKSK 333

Query: 241 ISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAA 300
           +SS G L   LF+ AYNYKL  ++KG+PQ+KAAPL D LVF K + A GGR++ +LSGAA
Sbjct: 334 VSSAGPLQSTLFQCAYNYKLKYLEKGLPQHKAAPLFDRLVFDKTKLALGGRVRILLSGAA 393

Query: 301 PLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVP 360
           PLP HVEEF+RVTSG+ L+QGYGLTESC+GCFT++ DV++M GTVGVPMTT+EARLESVP
Sbjct: 394 PLPRHVEEFMRVTSGSTLSQGYGLTESCAGCFTAIGDVYSMTGTVGVPMTTIEARLESVP 453

Query: 361 EMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQ 411
           EMGYDALS+VPRGEICLRGNTLFSGY+KR DLT+EV+VDGWFHTGDIGEWQ
Sbjct: 454 EMGYDALSNVPRGEICLRGNTLFSGYHKREDLTKEVMVDGWFHTGDIGEWQ 504

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523415|ref|XP_003530335.1| PREDICTED: long chain acyl-CoA synthetase 2-like [Glycine max]

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/411 (75%), Positives = 361/411 (87%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           MRSRGVNPGDRCGIYGSNCPEWII MEACNS A +YVPLYDTLG NAVEFIINHAEVSIA
Sbjct: 94  MRSRGVNPGDRCGIYGSNCPEWIIVMEACNSCAASYVPLYDTLGPNAVEFIINHAEVSIA 153

Query: 61  FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE 120
           FVQE KIPSILSCL +C   LKTIVSF +VS++QKKEAEE G SCFSW EFLQLG LD +
Sbjct: 154 FVQEKKIPSILSCLAQCSSNLKTIVSFGSVSTTQKKEAEEHGASCFSWGEFLQLGCLDWD 213

Query: 121 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 180
           LP KKK +I TIMYTSGTTG+PKGVV+ N+A +AEVLSVD + ++T +V  E+D YFSFL
Sbjct: 214 LPSKKKNDICTIMYTSGTTGDPKGVVIKNEAFMAEVLSVDHIIMLTDRVVGEDDVYFSFL 273

Query: 181 PLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNK 240
           PLAH+YDQI+ET+CI+KG SIGFW+GDVR+L+ED+Q LKPT+F GVPRV+DRIY GI +K
Sbjct: 274 PLAHVYDQIMETYCIYKGSSIGFWQGDVRFLLEDVQALKPTIFCGVPRVFDRIYAGIKSK 333

Query: 241 ISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAA 300
           +SS G L   LF+ AYNYKL +++KG+PQ+KAAPL D LVF K + A GGR++ +LSGAA
Sbjct: 334 VSSAGGLQSTLFQCAYNYKLKSLEKGLPQHKAAPLFDRLVFDKTKLALGGRVRILLSGAA 393

Query: 301 PLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVP 360
           PLP HVEEF+RVTSG+ L+QGYGLTESC+GCFT++ DV++M GTVGVPMTT+EARLESVP
Sbjct: 394 PLPRHVEEFMRVTSGSTLSQGYGLTESCAGCFTAIGDVYSMTGTVGVPMTTIEARLESVP 453

Query: 361 EMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQ 411
           EMGYDALS+VPRGEICLRGNTLFSGY+KR DLT+EV+VDGWFHTGDIGEWQ
Sbjct: 454 EMGYDALSNVPRGEICLRGNTLFSGYHKREDLTKEVMVDGWFHTGDIGEWQ 504

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	415
TAIR|locus:2010177	665	LACS2 "long-chain acyl-CoA syn	0.990	0.618	0.677	4.4e-155
TAIR|locus:2014265	665	LACS3 "long-chain acyl-CoA syn	0.992	0.619	0.573	3.8e-133
TAIR|locus:2136148	666	AT4G11030 [Arabidopsis thalian	0.992	0.618	0.578	1.2e-131
TAIR|locus:2138141	666	LACS4 "long-chain acyl-CoA syn	0.992	0.618	0.571	4.5e-130
TAIR|locus:2065195	660	LACS1 "AT2G47240" [Arabidopsis	0.992	0.624	0.493	9.2e-107
TAIR|locus:2083013	701	LACS6 "AT3G05970" [Arabidopsis	0.956	0.566	0.432	6e-80
TAIR|locus:2143661	700	LACS7 "AT5G27600" [Arabidopsis	0.954	0.565	0.416	5.5e-77
DICTYBASE|DDB_G0269474	673	fcsB "fatty acyl-CoA synthetas	0.959	0.591	0.382	7.3e-75
WB|WBGene00022037	719	acs-13 [Caenorhabditis elegans	0.963	0.556	0.393	5.1e-74
UNIPROTKB|E2R463	698	ACSL5 "Uncharacterized protein	0.963	0.573	0.379	1.6e-70

TAIR|locus:2010177 LACS2 "long-chain acyl-CoA synthetase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1512 (537.3 bits), Expect = 4.4e-155, P = 4.4e-155
 Identities = 280/413 (67%), Positives = 335/413 (81%)

Query:     1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
             +RSRGV+PG  CGIYG+NCPEWIIAMEAC SQ ITYVPLYD+LG NAVEFIINHAEVS+ 
Sbjct:    96 IRSRGVDPGHCCGIYGANCPEWIIAMEACMSQGITYVPLYDSLGVNAVEFIINHAEVSLV 155

Query:    61 FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLD-C 119
             FVQE  + SILSC   C   LKTIVSF  VSS+QK+EA+   VS FSW EF  +G LD  
Sbjct:   156 FVQEKTVSSILSCQKGCSSNLKTIVSFGEVSSTQKEEAKNQCVSLFSWNEFSLMGNLDEA 215

Query:   120 ELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSF 179
              LP K+KT+I TIMYTSGTTGEPKGV+L N AI  +VLS+D+M  VT + C   D +FS+
Sbjct:   216 NLPRKRKTDICTIMYTSGTTGEPKGVILNNAAISVQVLSIDKMLEVTDRSCDTSDVFFSY 275

Query:   180 LPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISN 239
             LPLAH YDQ++E + + +G S+G+WRGD+RYLM+D+Q LKPT+F GVPRVYD++Y GI  
Sbjct:   276 LPLAHCYDQVMEIYFLSRGSSVGYWRGDIRYLMDDVQALKPTVFCGVPRVYDKLYAGIMQ 335

Query:   240 KISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGA 299
             KIS+ G + KKLF+FAYNYKLGNM+KG  Q +A+P LD L+F KI+EA GGR   +LSGA
Sbjct:   336 KISASGLIRKKLFDFAYNYKLGNMRKGFSQEEASPRLDRLMFDKIKEALGGRAHMLLSGA 395

Query:   300 APLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESV 359
             APLP HVEEFLR+   + L+QGYGLTESC G FT+LA VF+M+GTVGVPM TVEARL SV
Sbjct:   396 APLPRHVEEFLRIIPASNLSQGYGLTESCGGSFTTLAGVFSMVGTVGVPMPTVEARLVSV 455

Query:   360 PEMGYDALSS-VPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQ 411
             PEMGYDA S+ VPRGEICLRGN++FSGY+KR DLT++V++DGWFHTGDIGEWQ
Sbjct:   456 PEMGYDAFSADVPRGEICLRGNSMFSGYHKRQDLTDQVLIDGWFHTGDIGEWQ 508

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0010143 "cutin biosynthetic process" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0010311 "lateral root formation" evidence=IMP

GO:0010025 "wax biosynthetic process" evidence=IGI

GO:0031957 "very long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA;TAS

TAIR|locus:2014265 LACS3 "long-chain acyl-CoA synthetase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1305 (464.4 bits), Expect = 3.8e-133, P = 3.8e-133
 Identities = 237/413 (57%), Positives = 313/413 (75%)

Query:     1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
             +R+ GV  GD+CGIYG+N PEWII+MEACN+  +  VPLYDTLGA A+EFII HAEVS+A
Sbjct:    96 IRTIGVGKGDKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAIEFIICHAEVSLA 155

Query:    61 FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT-LDC 119
             F +ENKI  +L   P+   YLK IVSF  V+++Q+ EAE   ++ +SW++FL+LG     
Sbjct:   156 FAEENKISELLKTAPKSTKYLKYIVSFGEVTNNQRVEAERHRLTIYSWDQFLKLGEGKHY 215

Query:   120 ELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSF 179
             ELP K+++++ TIMYTSGTTG+PKGV+LTN++I+  +  V ++     +  + +D Y S+
Sbjct:   216 ELPEKRRSDVCTIMYTSGTTGDPKGVLLTNESIIHLLEGVKKLLKTIDEELTSKDVYLSY 275

Query:   180 LPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISN 239
             LPLAHI+D++IE  CI++  SIGFWRGDV+ L+EDI  LKPT+F  VPRV +RIYTG+  
Sbjct:   276 LPLAHIFDRVIEELCIYEAASIGFWRGDVKILIEDIAALKPTVFCAVPRVLERIYTGLQQ 335

Query:   240 KISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGA 299
             K+S GG + KKLF FA+ YK  NM+KG P  +A+P+ D +VF K++E  GG ++ +LSGA
Sbjct:   336 KLSDGGFVKKKLFNFAFKYKHKNMEKGQPHEQASPIADKIVFKKVKEGLGGNVRLILSGA 395

Query:   300 APLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESV 359
             APL  H+E FLRV + A + QGYGLTESC G F S+ +  +M+GTVG P+  V+ RLESV
Sbjct:   396 APLAAHIESFLRVVACAHVLQGYGLTESCGGTFVSIPNELSMLGTVGPPVPNVDIRLESV 455

Query:   360 PEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQP 412
             PEMGYDAL+S PRGEIC+RG TLFSGYYKR DLT+EV +DGW HTGD+GEWQP
Sbjct:   456 PEMGYDALASNPRGEICIRGKTLFSGYYKREDLTQEVFIDGWLHTGDVGEWQP 508

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2136148 AT4G11030 [Arabidopsis thaliana (taxid:3702)]

 Score = 1291 (459.5 bits), Expect = 1.2e-131, P = 1.2e-131
 Identities = 239/413 (57%), Positives = 302/413 (73%)

Query:     1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
             +RS G+  G++CGIYG NC EWII+MEACN+  +  VPLYDTLGA AVEFII+HAEVSIA
Sbjct:    96 LRSCGIKEGEKCGIYGINCCEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHAEVSIA 155

Query:    61 FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT-LDC 119
             FV+E KIP +    P    Y+KT+VSF  V   QK+EAE+LG+   SW+EFL+LG     
Sbjct:   156 FVEEKKIPELFKTCPNSTKYMKTVVSFGGVKPEQKEEAEKLGLVIHSWDEFLKLGEGKQY 215

Query:   120 ELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSF 179
             ELP KK ++I TIMYTSGTTG+PKGV+++N++IV     V           SE+D Y S+
Sbjct:   216 ELPIKKPSDICTIMYTSGTTGDPKGVMISNESIVTITTGVMHFLGNVNASLSEKDVYISY 275

Query:   180 LPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISN 239
             LPLAH++D+ IE   I  G SIGFWRGDV+ L+ED+ ELKP++F  VPRV DR+YTG+  
Sbjct:   276 LPLAHVFDRAIEECIIQVGGSIGFWRGDVKLLIEDLGELKPSIFCAVPRVLDRVYTGLQQ 335

Query:   240 KISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGA 299
             K+S GG   KK+F+ A++YK GNMKKG     A+P  D LVF+K+++  GG ++ +LSGA
Sbjct:   336 KLSGGGFFKKKVFDVAFSYKFGNMKKGQSHVAASPFCDKLVFNKVKQGLGGNVRIILSGA 395

Query:   300 APLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESV 359
             APL  H+E FLRV +   + QGYGLTESC+G F +  D  +M+GTVG P+  V+ RLESV
Sbjct:   396 APLASHIESFLRVVACCNVLQGYGLTESCAGTFATFPDELDMLGTVGPPVPNVDIRLESV 455

Query:   360 PEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQP 412
             PEM YDAL S PRGEIC+RG TLFSGYYKR DLT+EV +DGW HTGD+GEWQP
Sbjct:   456 PEMNYDALGSTPRGEICIRGKTLFSGYYKREDLTKEVFIDGWLHTGDVGEWQP 508

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA;TAS

TAIR|locus:2138141 LACS4 "long-chain acyl-CoA synthetase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1276 (454.2 bits), Expect = 4.5e-130, P = 4.5e-130
 Identities = 236/413 (57%), Positives = 307/413 (74%)

Query:     1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
             +RS GV    +CGIYG+N PEWII+MEACN+  +  VPLYDTLGA+AVEFII+H+EVSI 
Sbjct:    96 LRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGADAVEFIISHSEVSIV 155

Query:    61 FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT-LDC 119
             FV+E KI  +    P    Y+KT+VSF  VS  QK+EAE  G+  ++W+EFL+LG     
Sbjct:   156 FVEEKKISELFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVIYAWDEFLKLGEGKQY 215

Query:   120 ELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSF 179
             +LP KKK++I TIMYTSGTTG+PKGV+++N++IV  +  V ++     +  + +D Y S+
Sbjct:   216 DLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANEALTVKDVYLSY 275

Query:   180 LPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISN 239
             LPLAHI+D++IE   I  G +IGFWRGDV+ L+ED+ ELKPT+F  VPRV DR+Y+G+  
Sbjct:   276 LPLAHIFDRVIEECFIQHGAAIGFWRGDVKLLIEDLAELKPTIFCAVPRVLDRVYSGLQK 335

Query:   240 KISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGA 299
             K+S GG L K +F+ A++YK G MKKG    +A+PL D LVFSK+++  GG ++ +LSGA
Sbjct:   336 KLSDGGFLKKFIFDSAFSYKFGYMKKGQSHVEASPLFDKLVFSKVKQGLGGNVRIILSGA 395

Query:   300 APLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESV 359
             APL  HVE FLRV +   + QGYGLTESC+G F SL D   M+GTVG P+  V+ RLESV
Sbjct:   396 APLASHVESFLRVVACCHVLQGYGLTESCAGTFVSLPDELGMLGTVGPPVPNVDIRLESV 455

Query:   360 PEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQP 412
             PEM YDAL+S  RGEIC+RG TLFSGYYKR DLT+EV++DGW HTGD+GEWQP
Sbjct:   456 PEMEYDALASTARGEICIRGKTLFSGYYKREDLTKEVLIDGWLHTGDVGEWQP 508

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA;TAS

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

TAIR|locus:2065195 LACS1 "AT2G47240" [Arabidopsis thaliana (taxid:3702)]

 Score = 1056 (376.8 bits), Expect = 9.2e-107, P = 9.2e-107
 Identities = 204/413 (49%), Positives = 267/413 (64%)

Query:     1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
             +R+ G  PG R GIYG NCP+WIIAMEAC +  +  VPLYDTLG+ AV++I+ HAE+   
Sbjct:    93 LRAAGAEPGSRVGIYGVNCPQWIIAMEACAAHTLICVPLYDTLGSGAVDYIVEHAEIDFV 152

Query:    61 FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE 120
             FVQ+ KI  +L    +C   LK IVSF NVS     +A E+GV  +SW +FL +G    E
Sbjct:   153 FVQDTKIKGLLEPDCKCAKRLKAIVSFTNVSDELSHKASEIGVKTYSWIDFLHMGREKPE 212

Query:   121 -LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSF 179
                P K  NI TIMYTSGT+G+PKGVVLT+QA+   V+ +D          + +D Y SF
Sbjct:   213 DTNPPKAFNICTIMYTSGTSGDPKGVVLTHQAVATFVVGMDLYMDQFEDKMTHDDVYLSF 272

Query:   180 LPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISN 239
             LPLAHI D++ E +   KG S+G++ G++  L +DIQELKPT  +GVPRV++RI+ GI  
Sbjct:   273 LPLAHILDRMNEEYFFRKGASVGYYHGNLNVLRDDIQELKPTYLAGVPRVFERIHEGIQK 332

Query:   240 KISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGA 299
              +       + +F   Y +KL  + +G   +KA+P+ D + F KIR+  GGR++ ++SG 
Sbjct:   333 ALQELNPRRRFIFNALYKHKLAWLNRGYSHSKASPMADFIAFRKIRDKLGGRIRLLVSGG 392

Query:   300 APLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESV 359
             APL   +EEFLRVT    + QGYGLTE+  G      D   M+GTVG+P    E RLE V
Sbjct:   393 APLSPEIEEFLRVTCCCFVVQGYGLTETLGGTALGFPDEMCMLGTVGIPAVYNEIRLEEV 452

Query:   360 PEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQP 412
              EMGYD L   P GEIC+RG  +FSGYYK P+LTEEV+ DGWFHTGDIGE  P
Sbjct:   453 SEMGYDPLGENPAGEICIRGQCMFSGYYKNPELTEEVMKDGWFHTGDIGEILP 505

GO:0001676 "long-chain fatty acid metabolic process" evidence=ISS;IDA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006633 "fatty acid biosynthetic process" evidence=ISS

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0010025 "wax biosynthetic process" evidence=IMP

GO:0010143 "cutin biosynthetic process" evidence=IMP

GO:0031957 "very long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2083013 LACS6 "AT3G05970" [Arabidopsis thaliana (taxid:3702)]

 Score = 803 (287.7 bits), Expect = 6.0e-80, P = 6.0e-80
 Identities = 178/412 (43%), Positives = 245/412 (59%)

Query:     5 GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE 64
             G+  G   GIY  N PEW+I   AC+S +   VPLYDTLG +AV+FI+NHA V   F   
Sbjct:   139 GIPMGSSVGIYFINRPEWLIVDHACSSYSYVSVPLYDTLGPDAVKFIVNHATVQAIFCVA 198

Query:    65 NKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE--LP 122
               + S+LSCL      ++ +V    +  S        GV   S+   L  G  + +   P
Sbjct:   199 ETLNSLLSCLSEMPS-VRLVVVVGGLIESLPSLPSSSGVKVVSYSVLLNQGRSNPQRFFP 257

Query:   123 PKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL 182
             PK   +++TI YTSGTTG PKGVVLT+  ++A V      F V  K  S  D Y S+LPL
Sbjct:   258 PKPD-DVATICYTSGTTGTPKGVVLTHANLIANVAG--SSFSV--KFFSS-DVYISYLPL 311

Query:   183 AHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKIS 242
             AHIY++  +   ++ G ++GF++GD   L++D+  L+PT+FS VPR+Y+RIY GI N + 
Sbjct:   312 AHIYERANQILTVYFGVAVGFYQGDNMKLLDDLAALRPTVFSSVPRLYNRIYAGIINAVK 371

Query:   243 SGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPL 302
             + G L ++LF  AYN K   +  G     A+P+ D LVF+KI++  GGR++ M SGA+PL
Sbjct:   372 TSGGLKERLFNAAYNAKKQALLNG---KSASPIWDRLVFNKIKDRLGGRVRFMTSGASPL 428

Query:   303 PIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEM 362
                V EFL+V  G  +T+GYG+TE+ S   + + +  N+ G VG P    E +L  VPEM
Sbjct:   429 SPEVMEFLKVCFGGRVTEGYGMTET-SCVISGMDEGDNLTGHVGSPNPACEVKLVDVPEM 487

Query:   363 GYDALSSV-PRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQP 412
              Y +     PRGEIC+RG  +F+GYYK    T+EVI  DGW HTGDIG W P
Sbjct:   488 NYTSADQPHPRGEICVRGPIIFTGYYKDEIQTKEVIDEDGWLHTGDIGLWLP 539

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA;TAS

GO:0003824 "catalytic activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA;TAS

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0005777 "peroxisome" evidence=IDA

GO:0010193 "response to ozone" evidence=IEP

GO:0016020 "membrane" evidence=IDA

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

TAIR|locus:2143661 LACS7 "AT5G27600" [Arabidopsis thaliana (taxid:3702)]

 Score = 775 (277.9 bits), Expect = 5.5e-77, P = 5.5e-77
 Identities = 172/413 (41%), Positives = 242/413 (58%)

Query:     5 GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE 64
             GVN GD  G+Y  N PEW++   AC + +   VPLYDTLG +AV+F++NHA +   F   
Sbjct:   139 GVNQGDCVGLYFINRPEWLVVDHACAAYSFVSVPLYDTLGPDAVKFVVNHANLQAIFCVP 198

Query:    65 NKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE-LPP 123
               +  +LS L      ++ IV                GV+  S+++ L  G        P
Sbjct:   199 QTLNILLSFLAEIPS-IRLIVVVGGADEHLPSLPRGTGVTIVSYQKLLSQGRSSLHPFSP 257

Query:   124 KKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVL--SVDQMFVVTGKVCSEEDTYFSFLP 181
              K  +I+TI YTSGTTG PKGVVLT+  ++A V   SV+  F  +       D Y S+LP
Sbjct:   258 PKPEDIATICYTSGTTGTPKGVVLTHGNLIANVAGSSVEAEFFPS-------DVYISYLP 310

Query:   182 LAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKI 241
             LAHIY++  +   ++ G ++GF++GDV  LM+D   L+PT+F  VPR+Y+RIY GI++ +
Sbjct:   311 LAHIYERANQIMGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIYDGITSAV 370

Query:   242 SSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAP 301
              S G + K+LFE AYN K   +  G  +  +A   D LVF+KI+E  GGR++ M SGA+P
Sbjct:   371 KSSGVVKKRLFEIAYNSKKQAIING--RTPSA-FWDKLVFNKIKEKLGGRVRFMGSGASP 427

Query:   302 LPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPE 361
             L   V +FLR+  G  + +GYG+TE+ S   +++ D  N+ G VG P    E +L  VPE
Sbjct:   428 LSPDVMDFLRICFGCSVREGYGMTET-SCVISAMDDGDNLSGHVGSPNPACEVKLVDVPE 486

Query:   362 MGYDALSS-VPRGEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHTGDIGEWQP 412
             M Y +     PRGEIC+RG  +F GYYK  + T E++  DGW HTGDIG W P
Sbjct:   487 MNYTSDDQPYPRGEICVRGPIIFKGYYKDEEQTREILDGDGWLHTGDIGLWLP 539

GO:0001676 "long-chain fatty acid metabolic process" evidence=IDA;TAS

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA;TAS

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0005777 "peroxisome" evidence=IDA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009651 "response to salt stress" evidence=IEP

GO:0010193 "response to ozone" evidence=IEP

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0007031 "peroxisome organization" evidence=RCA

GO:0009610 "response to symbiotic fungus" evidence=RCA

DICTYBASE|DDB_G0269474 fcsB "fatty acyl-CoA synthetase" [Dictyostelium discoideum (taxid:44689)]

 Score = 755 (270.8 bits), Expect = 7.3e-75, P = 7.3e-75
 Identities = 157/410 (38%), Positives = 239/410 (58%)

Query:     5 GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE 64
             G+ P  + GI+  N  EW+I   A   Q+   V  Y+TLG  ++ ++  HAE+ +AF   
Sbjct:   119 GLKPKSKVGIFSKNRLEWLIVHSASFIQSYCVVSFYETLGVESLSYVTEHAEIGLAFCSA 178

Query:    65 NKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT----LDCE 120
               +   L  + +    LKTI+ F ++       A+ELGV+ ++++E ++ G         
Sbjct:   179 ETLQKTLD-IAKGVKVLKTIICFDSIDKEHYNIAKELGVTLYTYDEIMKKGKEANGKHKH 237

Query:   121 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 180
              PP   T +STIMYTSGTTG PKGV++T++ + + V +V   F+   KV  + D ++S+L
Sbjct:   238 TPPTPDT-LSTIMYTSGTTGPPKGVMITHKNLTSVVCAVSD-FI---KVY-DTDVHYSYL 291

Query:   181 PLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNK 240
             P AH+ ++++     H G +IG + GD+  ++ +++ L PT+F GVPRV++RI T +  +
Sbjct:   292 PYAHVLERVVILAAFHFGAAIGIFSGDISNILVEVKLLSPTLFIGVPRVFERIKTNVFKE 351

Query:   241 ISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAA 300
             IS   AL + LF  AYN K  +++ G        +LD + FSKI++A GG+++ +LSG+A
Sbjct:   352 ISKKPALLRTLFNGAYNLKYLSIQHGFKLPIIEKVLDLVFFSKIKQALGGKVRVILSGSA 411

Query:   301 PLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVP 360
             PL    E FLRV     + QGYG +E C G      D    +GT+G P  + E +L  VP
Sbjct:   412 PLSFDTEVFLRVVMCCCVLQGYGASEGCGGDACKRLDD-ESVGTIGPPFASNEIKLVDVP 470

Query:   361 EMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEW 410
             E+GYD+   V  GE+CLRG ++ SGYYK  + T E   DGWFHTGDIG W
Sbjct:   471 ELGYDSNGEVQTGEVCLRGPSISSGYYKDEEKTREEFKDGWFHTGDIGRW 520

GO:0006631 "fatty acid metabolic process" evidence=IEA;ISS

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IEA;ISS

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

WB|WBGene00022037 acs-13 [Caenorhabditis elegans (taxid:6239)]

 Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
 Identities = 165/419 (39%), Positives = 247/419 (58%)

Query:     2 RSRGVNPG--DRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSI 59
             R  GV  G  +  GIY  N  EWII   A  + +   VP+Y+TLG+ A  FI+N AE+ I
Sbjct:   161 RELGVPTGNAENIGIYSKNRAEWIITEFATYNYSNVIVPIYETLGSEASIFILNQAEIKI 220

Query:    60 AFVQE-NKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLG--- 115
                 + +K   +L    +C   L T+V    V+   K  A  LGV   ++E+  ++G   
Sbjct:   221 VVCDDISKATGLLKFKEQCPS-LSTLVVMEPVTDELKTTASSLGVEVLTFEDLEKIGKNA 279

Query:   116 -TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEED 174
              T    +PP  + +++TI YTSGTTG PKGV+LT+  ++A+ + +D  F  +G   +  D
Sbjct:   280 KTRPAHIPPTPE-DLATICYTSGTTGTPKGVMLTHANVIADGVCMD-FFKHSGIAAT--D 335

Query:   175 TYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIY 234
             +  SFLPLAH+ +++IE+ C   G  +GF+RGD+R L EDI+ELKPT+   VPRV +R+Y
Sbjct:   336 SMISFLPLAHMLERVIESVCFCVGAKVGFYRGDIRVLAEDIKELKPTVVPVVPRVLNRLY 395

Query:   235 TGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQA 294
               + ++++    L K LF+FA +YK  +M     +N      D+LVF KIRE FGGR++ 
Sbjct:   396 DKVMSEVNKS-TLKKMLFDFAISYKARDMANFNIRNDG--FFDNLVFKKIREGFGGRVRL 452

Query:   295 MLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEA 354
             M++G+APL  +V  F+R   G  + +GYG TE  + C  S+ +  ++ G VG+ + + + 
Sbjct:   453 MITGSAPLSTNVLTFVRAAMGCVVVEGYGQTECVAACTVSM-EGDSLAGHVGMVIPSCQI 511

Query:   355 RLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQP 412
             +L  VPE+ Y A      GE+C++G+ +F GYYK    T+E I  DGW HTGDIG W P
Sbjct:   512 KLVDVPELNYYAKDQA--GEVCVKGHIIFKGYYKNEQQTKETIDEDGWLHTGDIGRWTP 568

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

UNIPROTKB|E2R463 ACSL5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 714 (256.4 bits), Expect = 1.6e-70, P = 1.6e-70
 Identities = 158/416 (37%), Positives = 244/416 (58%)

Query:     4 RGVNPG-DRC-GIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAF 61
             +G  P  D+  GI+  N PEWII+  AC + ++  VPLYDTLGA A+ +I+N A+++   
Sbjct:   142 KGYEPSSDQSVGIFAQNRPEWIISELACYTYSMVAVPLYDTLGAEAIIYIVNKADIAAVI 201

Query:    62 VQE-NKIPSILSCLPRCCLY-LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDC 119
                  K  +++  + +     LK I+         K+ AE+ G+   S  +   LG  + 
Sbjct:   202 CDTPQKASTLIENMEKGLTPGLKMIILMDPFEDDLKERAEKCGIEILSLFDAEILGKENF 261

Query:   120 ELP-PKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFS 178
               P P +  ++S I +TSGTTG+PKG +LT+Q I++ V S  +    T K  + ED   S
Sbjct:   262 RKPVPPRPEDLSIICFTSGTTGDPKGAMLTHQNIISNVSSFLKCMEYTFKP-TPEDVTIS 320

Query:   179 FLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGIS 238
             +LPLAH++++I++      G  +GF++GD+R L ED++ LKPT+F  VPR+ +RIY  + 
Sbjct:   321 YLPLAHMFERIVQAVIYSCGARVGFFQGDIRLLPEDLKTLKPTLFPSVPRLLNRIYDKVQ 380

Query:   239 NKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSG 298
             N+  +   L K L   A + K   +KKG+ +  +  + D L+F+KI+   GGR+  +++G
Sbjct:   381 NEAKT--PLKKFLLNLAISCKFNEVKKGIIRRDS--IWDKLIFAKIQATLGGRINFVVTG 436

Query:   299 AAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGC-FTSLADVFNMIGTVGVPMTTVEARLE 357
             AAP+   V  FLR   G P+ + YG TE  +GC FTS  D  +  G VGVP+     +LE
Sbjct:   437 AAPISSPVLMFLRAALGCPVFEAYGQTECTAGCTFTSPGDWTS--GHVGVPLACNHVKLE 494

Query:   358 SVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQP 412
              VP+M Y ++++   GEIC++G+ +F GY K P+ T+E +  DGW HTGDIG W P
Sbjct:   495 DVPDMNYFSVNN--EGEICIKGSNVFKGYLKDPEKTKEALDEDGWLHTGDIGRWLP 548

GO:0003824 "catalytic activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9XIA9	LACS2_ARATH	6, ., 2, ., 1, ., 3	0.6779	0.9903	0.6180	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	0.921
3rd Layer	6.2.1.3	0.914

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_LG_IX0278	long-chain-fatty-acid-CoA ligase (EC-6.2.1.3) (658 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pm.C_290034	acyl-CoA oxidase (EC-1.3.3.6) (664 aa)						•			0.901
	grail3.0096010101	acyl-CoA oxidase (EC-1.3.3.6) (639 aa)						•			0.900
	fgenesh4_pg.C_scaffold_3547000001	annotation not avaliable (326 aa)						•			0.899
	fgenesh4_pg.C_LG_XIX000851	acyl-CoA oxidase (EC-1.3.3.6) (680 aa)						•			0.899
	eugene3.00100112	annotation not avaliable (252 aa)						•			0.899
	estExt_fgenesh4_pm.C_LG_VII0199	acyl-CoA oxidase (EC-1.3.3.6) (689 aa)						•			0.899
	estExt_fgenesh4_pm.C_LG_V0077	acyl-CoA oxidase (EC-1.3.3.6) (691 aa)						•			0.899
	estExt_Genewise1_v1.C_LG_XVI3692	acyl-CoA oxidase (EC-1.3.3.6) (437 aa)						•			0.899
	estExt_Genewise1_v1.C_LG_VI1706	acyl-CoA oxidase (EC-1.3.3.6) (436 aa)						•			0.899
	gw1.XVI.1394.1	hypothetical protein (823 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	415
PLN02861	660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	0.0
PLN02614	666	PLN02614, PLN02614, long-chain acyl-CoA synthetase	0.0
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	0.0
PLN02430	660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	1e-175
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	1e-132
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	1e-110
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	4e-80
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	8e-79
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	2e-74
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	7e-74
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	1e-72
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	6e-60
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	4e-56
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	3e-52
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	7e-48
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	4e-47
PTZ00342	746	PTZ00342, PTZ00342, acyl-CoA synthetase; Provision	4e-45
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	3e-44
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	3e-38
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	5e-38
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	2e-35
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	1e-34
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	2e-34
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	7e-33
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	2e-31
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	2e-29
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	6e-29
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	2e-28
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	3e-28
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	6e-28
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	1e-27
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	6e-26
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	2e-25
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	4e-25
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	2e-24
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	2e-24
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	4e-24
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	1e-21
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	5e-21
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	5e-21
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	7e-21
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	5e-20
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	2e-19
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	2e-18
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	4e-18
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	4e-18
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	3e-17
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	3e-17
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	3e-17
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	1e-16
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	2e-16
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	2e-16
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	9e-16
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	1e-15
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	2e-15
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	2e-15
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	3e-15
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	4e-15
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	6e-15
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	9e-15
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	4e-14
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	2e-13
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	2e-13
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	7e-13
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	8e-13
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	9e-13
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	1e-12
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	1e-12
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	2e-12
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	1e-11
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	2e-11
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	2e-11
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	3e-11
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	4e-11
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	6e-11
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	9e-11
PRK12582	624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	1e-10
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	1e-10
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	2e-10
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	2e-10
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	3e-10
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	3e-10
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	5e-10
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	8e-10
PTZ00297	1452	PTZ00297, PTZ00297, pantothenate kinase; Provision	1e-09
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	1e-09
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	2e-09
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	2e-09
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	3e-09
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	3e-09
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	3e-09
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	5e-09
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	5e-09
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	8e-09
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	2e-08
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	2e-08
PRK06334	539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	4e-08
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	6e-08
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	7e-08
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	7e-08
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	9e-08
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	1e-07
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	2e-07
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	2e-07
cd05943	616	cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac	2e-07
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	3e-07
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	3e-07
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	4e-07
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	5e-07
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	6e-07
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	9e-07
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	1e-06
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	1e-06
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	3e-06
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	4e-06
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	5e-06
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	5e-06
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	6e-06
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	6e-06
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	6e-06
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	1e-05
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	1e-05
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	1e-05
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	2e-05
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	2e-05
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	2e-05
PRK04813	503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	3e-05
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	4e-05
PRK05850	578	PRK05850, PRK05850, acyl-CoA synthetase; Validated	4e-05
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	5e-05
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	5e-05
PRK10252	1296	PRK10252, entF, enterobactin synthase subunit F; P	6e-05
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	6e-05
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	7e-05
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	7e-05
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	9e-05
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	9e-05
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	1e-04
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	1e-04
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	1e-04
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	2e-04
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	2e-04
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	2e-04
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	2e-04
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	2e-04
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	2e-04
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	2e-04
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	2e-04
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	3e-04
cd05938	535	cd05938, hsFATP2a_ACSVL_like, Fatty acid transport	3e-04
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	4e-04
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	5e-04
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	6e-04
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	6e-04
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	7e-04
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	7e-04
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	7e-04
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	7e-04
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	9e-04
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	0.001
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	0.001
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	0.001
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	0.001
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	0.002
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	0.002
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	0.002
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	0.002
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	0.002
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	0.003
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	0.003
TIGR01217	652	TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase	0.003
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	0.003
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	0.004
PRK10524	629	PRK10524, prpE, propionyl-CoA synthetase; Provisio	0.004
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	0.004

>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase

 Score =  816 bits (2110), Expect = 0.0
 Identities = 330/412 (80%), Positives = 374/412 (90%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           +RSRGVNPGDRCGIYGSNCPEWIIAMEACNSQ ITYVPLYDTLGANAVEFIINHAEVSIA
Sbjct: 94  IRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIA 153

Query: 61  FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE 120
           FVQE+KI SILSCLP+C   LKTIVSF +VSS QK+EAEELGVSCFSWEEF  +G+LDCE
Sbjct: 154 FVQESKISSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCFSWEEFSLMGSLDCE 213

Query: 121 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 180
           LPPK+KT+I TIMYTSGTTGEPKGV+LTN+AI+AEVLS D +  VT +V +EED+YFS+L
Sbjct: 214 LPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYL 273

Query: 181 PLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNK 240
           PLAH+YDQ+IET+CI KG SIGFW+GD+RYLMED+Q LKPT+F GVPRVYDRIYTGI  K
Sbjct: 274 PLAHVYDQVIETYCISKGASIGFWQGDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQK 333

Query: 241 ISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAA 300
           ISSGG L KKLF+FAYNYKLGN++KG+ Q +A+P LD LVF KI+E  GGR++ +LSGAA
Sbjct: 334 ISSGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAA 393

Query: 301 PLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVP 360
           PLP HVEEFLRVTS + L+QGYGLTESC GCFTS+A+VF+M+GTVGVPMTT+EARLESVP
Sbjct: 394 PLPRHVEEFLRVTSCSVLSQGYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVP 453

Query: 361 EMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQP 412
           EMGYDALS VPRGEICLRGNTLFSGY+KR DLTEEV++DGWFHTGDIGEWQP
Sbjct: 454 EMGYDALSDVPRGEICLRGNTLFSGYHKRQDLTEEVLIDGWFHTGDIGEWQP 505

Length = 660

>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase

 Score =  540 bits (1393), Expect = 0.0
 Identities = 237/413 (57%), Positives = 308/413 (74%), Gaps = 1/413 (0%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           +RS GV    +CGIYG+N PEWII+MEACN+  +  VPLYDTLGA AVEFII+H+EVSI 
Sbjct: 96  LRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIV 155

Query: 61  FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT-LDC 119
           FV+E KI  +    P    Y+KT+VSF  VS  QK+EAE  G+  ++W+EFL+LG     
Sbjct: 156 FVEEKKISELFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVIYAWDEFLKLGEGKQY 215

Query: 120 ELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSF 179
           +LP KKK++I TIMYTSGTTG+PKGV+++N++IV  +  V ++        + +D Y S+
Sbjct: 216 DLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSY 275

Query: 180 LPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISN 239
           LPLAHI+D++IE   I  G +IGFWRGDV+ L+ED+ ELKPT+F  VPRV DR+Y+G+  
Sbjct: 276 LPLAHIFDRVIEECFIQHGAAIGFWRGDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQK 335

Query: 240 KISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGA 299
           K+S GG L K +F+ A++YK GNMKKG    +A+PL D LVF+K+++  GG ++ +LSGA
Sbjct: 336 KLSDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGA 395

Query: 300 APLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESV 359
           APL  HVE FLRV +   + QGYGLTESC+G F SL D  +M+GTVG P+  V+ RLESV
Sbjct: 396 APLASHVESFLRVVACCHVLQGYGLTESCAGTFVSLPDELDMLGTVGPPVPNVDIRLESV 455

Query: 360 PEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQP 412
           PEM YDAL+S PRGEIC+RG TLFSGYYKR DLT+EV++DGW HTGD+GEWQP
Sbjct: 456 PEMEYDALASTPRGEICIRGKTLFSGYYKREDLTKEVLIDGWLHTGDVGEWQP 508

Length = 666

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score =  521 bits (1345), Expect = 0.0
 Identities = 190/414 (45%), Positives = 249/414 (60%), Gaps = 46/414 (11%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           +R+ G+ PGD+ GI+  N PEWII  +AC SQ++  VPLYDTLG  A+E+I+N  E+SI 
Sbjct: 22  LRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPLYDTLGEEAIEYILNETEISIV 81

Query: 61  FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLD-C 119
           F    K+                                      +S+EE  +LG  +  
Sbjct: 82  FCDAVKV--------------------------------------YSFEELEELGKKNKV 103

Query: 120 ELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSF 179
              P K  +++TIMYTSGTTG PKGV+LT+  IVA V  ++++     +     D Y S+
Sbjct: 104 PPTPPKPEDLATIMYTSGTTGNPKGVMLTHGNIVAGVAGINKIV---PEFIGPTDVYISY 160

Query: 180 LPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISN 239
           LPLAHI+++++E  C++ G  IG++ GD R L  DI+ELKPT+F GVPRV DRIY GI  
Sbjct: 161 LPLAHIFERVVENVCLYIGGRIGYYSGDTRGLKGDIKELKPTVFVGVPRVLDRIYKGILA 220

Query: 240 KISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGA 299
           K+++ G L + LF FAYNYKL  +++G     A+PL D LVF KI+ A GGR++ MLSG 
Sbjct: 221 KVNAKGGLKRTLFNFAYNYKLAALRRG--HGYASPLWDKLVFKKIKAALGGRVRLMLSGG 278

Query: 300 APLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESV 359
           APL    +EFLRV  G P+ QGYGLTE+C+G   S        G VG P+   E +L  V
Sbjct: 279 APLSPDTQEFLRVALGCPVLQGYGLTETCAGGTLSDPGDTT-TGHVGPPLPCCEIKLVDV 337

Query: 360 PEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQP 412
           PEMGY A    PRGEIC+RG  +F GYYK P+ T E    DGWFHTGDIGEW P
Sbjct: 338 PEMGYFAKDDPPRGEICIRGPNVFKGYYKNPEKTAEAFDEDGWFHTGDIGEWLP 391

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase

 Score =  504 bits (1300), Expect = e-175
 Identities = 205/413 (49%), Positives = 270/413 (65%), Gaps = 1/413 (0%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           +R+ G  PG R GIYGSNCP+WI+AMEAC + ++  VPLYDTLG  AV++I++HAE+   
Sbjct: 93  LRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFV 152

Query: 61  FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLD-C 119
           FVQ+ KI  +L    +    LK IVSF +V+  +  +A ++GV  +SW +FL +G  +  
Sbjct: 153 FVQDKKIKELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTYSWIDFLHMGKENPS 212

Query: 120 ELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSF 179
           E  P K  +I TIMYTSGT+G+PKGVVLT++A+   V  VD          + +D Y SF
Sbjct: 213 ETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYLSF 272

Query: 180 LPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISN 239
           LPLAHI D++IE +   KG S+G++ GD+  L +D+ ELKPT+ +GVPRV++RI+ GI  
Sbjct: 273 LPLAHILDRMIEEYFFRKGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFERIHEGIQK 332

Query: 240 KISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGA 299
            +       + +F   Y YKL  M +G    KA+P+ D L F K++   GGRL+ ++SG 
Sbjct: 333 ALQELNPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGG 392

Query: 300 APLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESV 359
           APL   +EEFLRVTS A + QGYGLTE+         D   M+GTVG P    E RLE V
Sbjct: 393 APLSTEIEEFLRVTSCAFVVQGYGLTETLGPTTLGFPDEMCMLGTVGAPAVYNELRLEEV 452

Query: 360 PEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQP 412
           PEMGYD L   PRGEIC+RG  LFSGYYK P+LTEEV+ DGWFHTGDIGE  P
Sbjct: 453 PEMGYDPLGEPPRGEICVRGKCLFSGYYKNPELTEEVMKDGWFHTGDIGEILP 505

Length = 660

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score =  392 bits (1010), Expect = e-132
 Identities = 173/419 (41%), Positives = 239/419 (57%), Gaps = 21/419 (5%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           +   G+  G   G+Y  N PEW+I   AC++ +   VPLYDTLG +AV+FI+NHAEV+  
Sbjct: 95  LVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAI 154

Query: 61  FVQENKIPSILSCLPRC-CLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDC 119
           F     + ++LSCL     + L  IV                GV   ++ + L  G    
Sbjct: 155 FCVPQTLNTLLSCLSEIPSVRL--IVVVGGADEPLPSLPSGTGVEIVTYSKLLAQGRSSP 212

Query: 120 ELP-PKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEV--LSVDQMFVVTGKVCSEEDTY 176
           +   P K  +++TI YTSGTTG PKGVVLT+  ++A V   S+   F  +       D +
Sbjct: 213 QPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPS-------DVH 265

Query: 177 FSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTG 236
            S+LPLAHIY+++ +   +H G ++GF++GD   LM+D+  L+PT+F  VPR+Y+RIY G
Sbjct: 266 ISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMDDLAALRPTIFCSVPRLYNRIYDG 325

Query: 237 ISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAML 296
           I+N +   G L ++LF  AYN K   ++ G      +P+ D LVF+KI+   GGR++ M 
Sbjct: 326 ITNAVKESGGLKERLFNAAYNAKKQALENGKN---PSPMWDRLVFNKIKAKLGGRVRFMS 382

Query: 297 SGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVF-NMIGTVGVPMTTVEAR 355
           SGA+PL   V EFLR+  G  + +GYG+TE  + C  S  D   N+ G VG P    E +
Sbjct: 383 SGASPLSPDVMEFLRICFGGRVLEGYGMTE--TSCVISGMDEGDNLSGHVGSPNPACEVK 440

Query: 356 LESVPEMGY-DALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQP 412
           L  VPEM Y       PRGEIC+RG  +F GYYK    T EVI  DGW HTGDIG W P
Sbjct: 441 LVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIGLWLP 499

Length = 651

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score =  335 bits (862), Expect = e-110
 Identities = 141/424 (33%), Positives = 218/424 (51%), Gaps = 36/424 (8%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           + S G+  GDR  I+ +N PEW IA  A  +     VP+Y T     + +I+N +E  + 
Sbjct: 62  LLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPIYSTSTPEQLAYILNESESKVI 121

Query: 61  FVQENKIPS-ILSCLPRCCLYLKTIVSFANV------SSSQKKEAEELGVSCFSWEEFLQ 113
           FV+  ++   +L  L  C   +  IV    V       +   +   + G+S F     + 
Sbjct: 122 FVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFPDEGISLFL----ID 177

Query: 114 LGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEE 173
              L+  + P K  +++TI+YTSGTTG PKGV+LT++ ++A+V  +D++    G      
Sbjct: 178 SAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIG----PG 233

Query: 174 DTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRI 233
           D   SFLPLAHI+++  E      G     ++ D R L+ED++E++PT+  GVPRV++++
Sbjct: 234 DRVLSFLPLAHIFERAFEGGLALYGGVTVLFKEDPRTLLEDLKEVRPTVMIGVPRVWEKV 293

Query: 234 YTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLL---DSLVFSKIREAFGG 290
           Y GI  K++   A+ +KLF +A       + + +        L   D LVF KIR+A GG
Sbjct: 294 YKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALGG 353

Query: 291 RLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSG-CFTSLADVFNMIGTVGVPM 349
           R++  LSG APL   +  F R + G P+ +GYGLTE+ +             +GTVG P+
Sbjct: 354 RIRYALSGGAPLSPELLHFFR-SLGIPILEGYGLTETSAVVSVNPPDRFV--LGTVGKPL 410

Query: 350 TTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHTGDIG 408
             +E ++                GEI +RG  +  GYYK P+ T E    DGWF TGD+G
Sbjct: 411 PGIEVKI-------------ADDGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLG 457

Query: 409 EWQP 412
           E   
Sbjct: 458 ELDE 461

Length = 613

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score =  260 bits (666), Expect = 4e-80
 Identities = 138/425 (32%), Positives = 212/425 (49%), Gaps = 41/425 (9%)

Query: 5   GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE 64
           G+  G    IY     EW+ ++    SQ++    +Y  LG +A+ + +   E        
Sbjct: 142 GLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNG 201

Query: 65  NKIPSILSCL-----PRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLD- 118
             +P++L  +     P       TI+   ++ +S   E    G    +W + +  G    
Sbjct: 202 KNVPNLLRLMKSGGMPNT-----TIIYLDSLPASVDTE----GCRLVAWTDVVAKGHSAG 252

Query: 119 CELPPKKKTN---ISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV-VTGKVCSEED 174
              P     N   ++ IMYTSGTTG+PKGV+ T+ ++ A +L+++     + G    E++
Sbjct: 253 SHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPP-EEDE 311

Query: 175 TYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLME-------DIQELKPTMFSGVP 227
           TY S+LPLAHI +  +    + +G  IGF  G  R L +       D+ E +P    GVP
Sbjct: 312 TYCSYLPLAHIMEFGVTNIFLARGALIGF--GSPRTLTDTFARPHGDLTEFRPVFLIGVP 369

Query: 228 RVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREA 287
           R++D I   +  K+   G+L +++F+ AY  +L  +K+G    K  P  +  VFS  R  
Sbjct: 370 RIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEG----KDTPYWNEKVFSAPRAV 425

Query: 288 FGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM-IGTVG 346
            GGR++AMLSG  PL    +EF+ V  G  + QG+GLTE+   C   +    ++    VG
Sbjct: 426 LGGRVRAMLSGGGPLSAATQEFVNVVFG-MVIQGWGLTETV--CCGGIQRTGDLEPNAVG 482

Query: 347 VPMTTVEARLESVPEMGY-DALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHT 404
             +  VE +L    E  + D     PRGEI LRG  LF GYYK+ +LT EV+  DGWFHT
Sbjct: 483 QLLKGVEMKLLDTEEYKHTDT--PEPRGEILLRGPFLFKGYYKQEELTREVLDEDGWFHT 540

Query: 405 GDIGE 409
           GD+G 
Sbjct: 541 GDVGS 545

Length = 700

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score =  250 bits (641), Expect = 8e-79
 Identities = 100/284 (35%), Positives = 149/284 (52%), Gaps = 54/284 (19%)

Query: 129 ISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 188
           ++T++YTSGTTG PKGV+LT++ ++A+  ++ ++  ++       D   SFLPLAH+++Q
Sbjct: 90  LATLIYTSGTTGNPKGVMLTHRNLLAQAAALLEVIPLS-----PGDRVLSFLPLAHVFEQ 144

Query: 189 IIETH-CIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGAL 247
            +  +  +  G  + F       L+ED++E++PT+F  VPRV+++IY GI  K+++ G L
Sbjct: 145 RLGEYLPLSSGARVNF-AESPETLLEDLREVRPTVFFAVPRVWEKIYAGIEAKVAAAGPL 203

Query: 248 SKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVE 307
            +KLF +A                                 GGRL+  +SG APLP  V 
Sbjct: 204 KRKLFRWA-------------------------------LGGGRLRFAVSGGAPLPPEVL 232

Query: 308 EFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDAL 367
           EF R   G P+ +GYGLTE+      +       IGTVG P+  VE R+           
Sbjct: 233 EFFR-ALGIPILEGYGLTETSGVATVNRPGDIR-IGTVGKPLPGVEVRI----------- 279

Query: 368 SSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEW 410
                GEI +RG  +  GYYK P+ T E +  DGW HTGDIG  
Sbjct: 280 --AEDGEILVRGPNVMKGYYKNPEATAEALDEDGWLHTGDIGRL 321

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score =  245 bits (627), Expect = 2e-74
 Identities = 155/435 (35%), Positives = 222/435 (51%), Gaps = 41/435 (9%)

Query: 5   GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFV-- 62
           G N  +R  I+     EW+IA++ C  Q IT V +Y +LG  A+   +N  EV+      
Sbjct: 127 GHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDS 186

Query: 63  -QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG---VSCFSWEEFL-QLGTL 117
            Q  K+  I S L      +K ++   +                VS FS  E L +   +
Sbjct: 187 KQLKKLIDISSQLET----VKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENPV 242

Query: 118 DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYF 177
           D +LP     +I+ IMYTSG+TG PKGV++T+  IVA V  V  M VV      + D Y 
Sbjct: 243 DPDLP--SPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGV--MTVVPK--LGKNDVYL 296

Query: 178 SFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLME-----------DIQELKPTMFSGV 226
           ++LPLAHI +   E+     G +IG+  G    L +           D   LKPT+ + V
Sbjct: 297 AYLPLAHILELAAESVMAAVGAAIGY--GSPLTLTDTSNKIKKGTKGDASALKPTLMTAV 354

Query: 227 PRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLL--DSLVFSKI 284
           P + DR+  G+  K+ + G L+KKLF+ AY  +L  ++           L  D+LVF KI
Sbjct: 355 PAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKI 414

Query: 285 REAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSG-CFTSLADVFNMIG 343
           R   GGR++ MLSG APL    + F+ +  GAP+ QGYGLTE+C+G  F+   D    +G
Sbjct: 415 RAVLGGRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLTETCAGATFSEWDDT--SVG 472

Query: 344 TVGVPMTTVEARLESVPEMGYDALSS-VPRGEICLRGNTLFSGYYKRPDLTEEVI-VDG- 400
            VG P+     +L S  E GY      +PRGEI + G ++  GY+K  + T+EV  VD  
Sbjct: 473 RVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDER 532

Query: 401 ---WFHTGDIGEWQP 412
              WF+TGDIG++ P
Sbjct: 533 GMRWFYTGDIGQFHP 547

Length = 696

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  236 bits (604), Expect = 7e-74
 Identities = 109/423 (25%), Positives = 171/423 (40%), Gaps = 78/423 (18%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           +R+ GV PGDR  I   N PEW++A+ A       YVPL  +L A  + +I+  +E  + 
Sbjct: 16  LRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPAERLAYILEDSEAKVL 75

Query: 61  FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE 120
              +  +P +L  L +  + L  I+   +       + E L              + +  
Sbjct: 76  ITDDELLPKLLEVLLKLLVLLALIIVGDDGEGLDLLDDELLA-----------GASAEPP 124

Query: 121 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 180
            PP    +++ I+YTSGTTG+PKGV+LT++ ++A    + + F +T       D     L
Sbjct: 125 APPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFGLT-----PGDRVLLLL 179

Query: 181 PLAHIYDQIIETHCIHKGCSIGF---WRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGI 237
           PL            +  G ++     +  D   L++ I++ K T+  GVP +   +    
Sbjct: 180 PLHFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVTVLYGVPTLLRLLL--- 236

Query: 238 SNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLS 297
                                              AP       S +R         +LS
Sbjct: 237 ----------------------------------KAPEEKKYDLSSLRL--------VLS 254

Query: 298 GAAPLPIHV-EEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM-IGTVGVPMTTVEAR 355
           G  PLP  +         G PL  GYG TE+      +L     +  G++G P+  VE +
Sbjct: 255 GGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATANLPGDPEVKPGSIGRPLPGVEVK 314

Query: 356 LESVPEMGYDALSSVP---RGEICLRGNTLFSGYYKRPDLTEEVIV-DGWF--HTGDIGE 409
           +  + E G      VP    GE+C+RG  +  GY   P+LT E  V DGW    TGD+G 
Sbjct: 315 V--LDEEG----EPVPPGEVGELCIRGPGVARGYLNDPELTAERFVEDGWGMYRTGDLGR 368

Query: 410 WQP 412
           W  
Sbjct: 369 WDE 371

Length = 412

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score =  236 bits (603), Expect = 1e-72
 Identities = 127/424 (29%), Positives = 184/424 (43%), Gaps = 79/424 (18%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           ++S G+ PGDR  I   NC EWIIA  A        VPLY TL A  + +++ H++    
Sbjct: 23  LQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSVPLYPTLTAETIRYVLEHSDAKAL 82

Query: 61  FV--------QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFL 112
           FV         +  +P  L  +        T+                     + W++ L
Sbjct: 83  FVGKLDDWDAMKAGVPEGLPTIIL--FPYSTLKDH------------------YKWDDLL 122

Query: 113 QLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAI--VAEVLSVDQMFVVTGKVC 170
                    P  +  +++TI+YTSGTTG+PKGV+L+  A    A+               
Sbjct: 123 AATEPLQGRPLPEPEDLATIVYTSGTTGQPKGVMLSFGAFAFAAQGTIEIIGL------- 175

Query: 171 SEEDTYFSFLPLAHIYD-QIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRV 229
           +  D   S+LPLAHI +  I+E   ++ G  + F    +     D+Q  +PT+F  VPR+
Sbjct: 176 TPNDRLLSYLPLAHIAERVIVEGGSLYSGAEVFFVES-LDTFAADLQRARPTVFFSVPRL 234

Query: 230 YDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFG 289
           + +   GI  K+       +KL     N  L             P+L SLV  KI +  G
Sbjct: 235 WTKFQQGILAKLP-----PEKL-----NLLLKI-----------PILSSLVKKKILKGLG 273

Query: 290 -GRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESC-SGCFTSLADVFNMIGTVGV 347
             + +   SGAAP+P  +  + R   G P+ +GYG+TE+          D    IGTVG 
Sbjct: 274 LDQARLAGSGAAPMPPALIAWYR-KLGLPICEGYGMTENFAYSTLNYPGD--RRIGTVGK 330

Query: 348 PMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHTGD 406
           P+  VE ++                GEI +R   L SGYYK P+ T E    DGW HTGD
Sbjct: 331 PIPGVELKIS-------------EDGEILIRSPGLMSGYYKDPEKTAEAFTEDGWLHTGD 377

Query: 407 IGEW 410
            GE 
Sbjct: 378 KGEI 381

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score =  204 bits (521), Expect = 6e-60
 Identities = 127/426 (29%), Positives = 200/426 (46%), Gaps = 65/426 (15%)

Query: 13  GIYGSNCPEWIIA-MEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFV----QENKI 67
           GI G N PEW IA + A  +  I  V +Y T    A +++   +E +I  V    Q  KI
Sbjct: 37  GILGFNSPEWFIAAVGAIFAGGIA-VGIYTTNSPEACQYVAETSEANILVVDNAKQLQKI 95

Query: 68  PSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLG------TLDCEL 121
            +I   LP     LK I+ +       ++  +E   + +SW+EF++LG       LD  +
Sbjct: 96  LAIQDQLPH----LKAIIQY-------REPLKEKEPNLYSWKEFMELGRSIPDEQLDAII 144

Query: 122 PPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV--AEVLSVDQMFVVTGKVCSEEDTYFSF 179
             +K     T++YTSGTTG PKGV+L++  I   A+           G+     ++  S+
Sbjct: 145 ESQKPNQCCTLIYTSGTTGMPKGVMLSHDNITWTAKAAVKHMDLRTVGQ-----ESVVSY 199

Query: 180 LPLAHIYDQIIETH-CIHKGCSIGFWRGDVR--YLMEDIQELKPTMFSGVPRVYDRIYTG 236
           LPL+HI  QI++    I  G  + F + D     L++ ++E++PT F GVPRV+++I   
Sbjct: 200 LPLSHIAAQILDIWLPISVGGCVYFAQPDALKGTLVKTLREVRPTAFMGVPRVWEKIQER 259

Query: 237 ISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAP-----------LLDSLVFSKIR 285
           +    +    L +K+  +A          G+  N               L   LVF K+R
Sbjct: 260 MKAVGAKSTGLKRKIASWA-------KGVGLETNLKLMGGESPPPMCFRLAKKLVFKKVR 312

Query: 286 EAFG-GRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFT-SLADVFNMIG 343
           +A G  R Q   +GAAP+     EF  ++   P+ + YG++E  SG  T S    +  + 
Sbjct: 313 KALGLDRCQKFFTGAAPISRETLEFF-LSLNIPIMELYGMSE-TSGPHTVSNPQNYR-LL 369

Query: 344 TVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWF 402
           + G  +   E ++ +    G         GEIC+ G  +F GY    + TEE I  DGW 
Sbjct: 370 SCGKALPGCETKIHNPDADGI--------GEICIWGRHVFMGYLNMEEKTEEAIDEDGWL 421

Query: 403 HTGDIG 408
           H+GD+G
Sbjct: 422 HSGDLG 427

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  193 bits (491), Expect = 4e-56
 Identities = 107/428 (25%), Positives = 159/428 (37%), Gaps = 87/428 (20%)

Query: 2   RSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAF 61
           ++ GV PGDR  I   N PE++IA  A        VPL   L    + +I+N A   +  
Sbjct: 56  QALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLI 115

Query: 62  VQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLG-TLDCE 120
                   + +      + L  ++                     + E     G   D +
Sbjct: 116 TSAEFAALLEAVAEALPVVLVVLLVGDADDRLPI-----------TLEALAAEGPGPDAD 164

Query: 121 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 180
             P    +++ ++YTSGTTG PKGVVLT++ ++A    +       G   + +D   S+L
Sbjct: 165 ARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAAL---GGGLTPDDVVLSWL 221

Query: 181 PLAHIYDQIIETHCIHKGCSIGFWRGDVRYLM-----------EDIQELKPTMFSGVPRV 229
           PL HI+  I+       G       G    L+             I++ K T+ SGVP  
Sbjct: 222 PLFHIFGLIV-------GLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTF 274

Query: 230 YDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFG 289
                                                        LLD+    K  +   
Sbjct: 275 LRE------------------------------------------LLDNP--EKDDDDLS 290

Query: 290 GRLQAMLSGAAPLPIHV-EEFLRVTSGAPLTQGYGLTESCSG-CFTSLADVFNMIGTVGV 347
             L+ +LSG APLP  + E F        + +GYGLTE+          D+    G+VG 
Sbjct: 291 SSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLAKPGSVGR 350

Query: 348 PMTTVEARLESVPEMGYDALSSVPR--GEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHT 404
           P+  VE R+        D    +P   GEI +RG  +  GY+ RP+ T E    DGW  T
Sbjct: 351 PLPGVEVRIVDP-----DGGEVLPGEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRT 405

Query: 405 GDIGEWQP 412
           GD+G    
Sbjct: 406 GDLGYVDE 413

Length = 534

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  180 bits (460), Expect = 3e-52
 Identities = 103/420 (24%), Positives = 158/420 (37%), Gaps = 115/420 (27%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYV-----PLYDTLGANAVEFIINHA 55
           ++  GV  GDR  +   NCP++ IA           V     PLY       +E  +N +
Sbjct: 41  LQQLGVKKGDRVALMLPNCPQFPIAYFGI--LKAGAVVVPVNPLYT---PRELEHQLNDS 95

Query: 56  EVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLG 115
              +  V                                            S+E+ L  G
Sbjct: 96  GAKVLIV------------------------------------------AISFEDALASG 113

Query: 116 TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDT 175
                       +++ + YT GTTG PKG +LT++ +VA   +V Q+      +   ED 
Sbjct: 114 APLPLPVELSPDDLAVLQYTGGTTGVPKGAMLTHRNLVA---NVQQIAAWVKDLREGEDR 170

Query: 176 YFSFLPLAHIYDQIIET-HCIHKGCSIGFW-RGDVRYLMEDIQELKPTMFSGVPRVYDRI 233
           + + LPL HI+   +     +  G +           ++++I+  + T+F GVP     +
Sbjct: 171 FLTALPLFHIFGLTVNMLLGLRLGATNVLVPNFRPINVLKEIKRYRFTIFPGVPT----L 226

Query: 234 YTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQ 293
           Y  + N                                  P      FS +R        
Sbjct: 227 YNALLN---------------------------------HPEFKKYDFSSLRLC------ 247

Query: 294 AMLSGAAPLPIHV-EEFLRVTSGAPLTQGYGLTE-SCSGCFTSLADVFNMIGTVGVPMTT 351
             +SG APLP+ V E F   T GAPL +GYGLTE S       L       G++G+P+  
Sbjct: 248 --ISGGAPLPVEVAERFEEKT-GAPLVEGYGLTETSPVTTVNPLDGE-RKPGSIGLPLPG 303

Query: 352 VEARLESVPEMGYDALSSVPR---GEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIG 408
            E ++        D  + +P    GE+ +RG  +  GY+ RP+ T EV+ DGW  TGDIG
Sbjct: 304 TEVKIVD------DEGNELPPGEVGELVVRGPQVMKGYWNRPEETAEVLTDGWLRTGDIG 357

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  170 bits (433), Expect = 7e-48
 Identities = 105/426 (24%), Positives = 167/426 (39%), Gaps = 88/426 (20%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           +R+ GV  GDR  ++  N  E++ A  A         P+   L    + +I+N AE  + 
Sbjct: 48  LRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVV 107

Query: 61  FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE 120
            V    +P + + LP+        V    V       A  L      +EE L   +   +
Sbjct: 108 LVDSEFVPLLAAILPQL-----PTVRTVIVEGD--GPAAPLAPEVGEYEELLAAASDTFD 160

Query: 121 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 180
            P   + + + ++YTSGTTG PKGVVL+++ +    L+V     ++      +D Y   +
Sbjct: 161 FPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLS-----RDDVYLVIV 215

Query: 181 PLAHIYDQIIETHC----IHKGCSI---GFWRGDVRYLMEDIQELKPTMFSGVPRVYDRI 233
           P+ H++            +  G         R D   L++ I+  + T F  VP ++   
Sbjct: 216 PMFHVH----AWGLPYLALMAGAKQVIPR--RFDPENLLDLIETERVTFFFAVPTIW--- 266

Query: 234 YTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQ 293
                                        M   + +   A  +D   FS +R        
Sbjct: 267 ----------------------------QM---LLKAPRAYFVD---FSSLRL------- 285

Query: 294 AMLSGAAPLPIH-VEEFLRVTSGAPLTQGYGLTESCS-GCFTSLAD----VFNMIGTVGV 347
            ++ G A LP   + EF     G  L QGYG+TE+          D     +    + G 
Sbjct: 286 -VIYGGAALPPALLREFKEKF-GIDLVQGYGMTETSPVVSVLPPEDQLPGQWTKRRSAGR 343

Query: 348 PMTTVEARL-----ESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWF 402
           P+  VEAR+     + +P  G +       GEI +RG  L  GY+ RP+ T E I  GW 
Sbjct: 344 PLPGVEARIVDDDGDELPPDGGEV------GEIIVRGPWLMQGYWNRPEATAETIDGGWL 397

Query: 403 HTGDIG 408
           HTGD+G
Sbjct: 398 HTGDVG 403

Length = 521

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  167 bits (426), Expect = 4e-47
 Identities = 98/412 (23%), Positives = 158/412 (38%), Gaps = 62/412 (15%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           +R  G+  GD   +   N  E+      C +          +   + +   +  ++  + 
Sbjct: 27  LRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAANPSYTPDELAHQLKISKPKLI 86

Query: 61  FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE 120
           F   +++  +     +    +  I+       S       +       E  L        
Sbjct: 87  FCDPDELDKVKEAA-KELGPVVRIIVL----DSAPDGVLRIEDL---LEPRLGAEDEFRP 138

Query: 121 LPPK-KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSF 179
            P    K + + ++Y+SGTTG PKGV+L+++ I+A +  V       G   S  D   +F
Sbjct: 139 TPLIDGKDDTAALLYSSGTTGLPKGVMLSHKNIIANLSQVQDTL--KGNPDSSNDVVLTF 196

Query: 180 LPLAHIYDQIIETHCIHKGC-SIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGIS 238
           LP  H Y        +  G   I   + D    ++ I++ K T    VP +         
Sbjct: 197 LPFYHAYGLTTTLASLLCGATVIIMPKFDSETFLKLIEKYKVTSLFLVPPIAV------- 249

Query: 239 NKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSG 298
                  AL+K                       +PL+D    S +R  F        SG
Sbjct: 250 -------ALAK-----------------------SPLVDKYDLSSLRVIF--------SG 271

Query: 299 AAPLPIHVEEFLRV-TSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLE 357
           AAPL   ++E LR       + QGYG+TE+      +        G+VG  +  VEA++ 
Sbjct: 272 AAPLSKELQEELRKRFPNTTIKQGYGMTETGPATTLTPPG-DEKPGSVGRLVPNVEAKI- 329

Query: 358 SVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHTGDIG 408
            V E G  +L    RGE+C++G  +  GY   P+ T+E I  DGW HTGDIG
Sbjct: 330 -VDEDGGKSLGPNERGELCVKGPQIMKGYLNNPEATKETIDEDGWLHTGDIG 380

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional

 Score =  166 bits (421), Expect = 4e-45
 Identities = 92/318 (28%), Positives = 170/318 (53%), Gaps = 17/318 (5%)

Query: 95  KKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA 154
           K++A++LG+S   +++  +  T + ++  +    I++I+YTSGT+G+PKGV+L+N+ +  
Sbjct: 272 KEKAKKLGISIILFDDMTKNKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYN 331

Query: 155 EVLSV-DQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLME 213
            V+ +                T+ S+LP++HIY+++I       G +I  W  D+ Y  +
Sbjct: 332 TVVPLCKHSIFKKYNP----KTHLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSK 387

Query: 214 DIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAA 273
           DI   K  + +GVP+V++RIYT I  +I++   L + L +   + +  N   G  +    
Sbjct: 388 DIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGFSK---- 443

Query: 274 PLLDSL--VFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGC 331
             L+ +  + SKI++     L+ +L+G   L   + E L V       QGYGLTE+    
Sbjct: 444 -FLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPI 502

Query: 332 FTSLADVFNMIGTVGVPMT-TVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRP 390
           F   AD  N   ++G P++   + ++ +     Y A  ++P+GE+ ++ +++FSGY+   
Sbjct: 503 FVQHADDNNT-ESIGGPISPNTKYKVRTWET--YKATDTLPKGELLIKSDSIFSGYFLEK 559

Query: 391 DLTEEVIV-DGWFHTGDI 407
           + T+     DG+F TGDI
Sbjct: 560 EQTKNAFTEDGYFKTGDI 577

Length = 746

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score =  160 bits (407), Expect = 3e-44
 Identities = 103/434 (23%), Positives = 161/434 (37%), Gaps = 104/434 (23%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           + + G+  GDR  I+  N P W+IA           VPL     A+   +I+   +    
Sbjct: 47  LAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYTADEAAYILARGDAKAL 106

Query: 61  FVQENKIP---SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTL 117
           FV    +    S  + LP     L+ +V        + +E +       ++ +FL  G  
Sbjct: 107 FVLGLFLGVDYSATTRLPA----LEHVVIC------ETEEDDPHTEKMKTFTDFLAAGDP 156

Query: 118 DCELPPKKKTNISTIMYTSGTTGEPKGVVLT------NQAIVAEVLSVDQMFVVTGKVCS 171
               P     +++ I++TSGTTG PKG +LT      N A  AE L +            
Sbjct: 157 AERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLT----------- 205

Query: 172 EEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG---------DVRYLMEDIQELKPTM 222
           E D Y +  P  H++           G +    RG         D   +   I+  + T+
Sbjct: 206 EGDRYLAANPFFHVF-------GYKAGVNAPLMRGATILPLPVFDPDEVFRLIETERITV 258

Query: 223 FSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFS 282
             G P +Y+ +                                        P   +   S
Sbjct: 259 LPGPPTMYNSLL-------------------------------------QHPDRSAEDLS 281

Query: 283 KIREAFGGRLQAMLSGAAPLP---IH-VEEFLRVTSGAPLTQGYGLTESCS-GCFTSLAD 337
            +R A        ++GAA +P   +   E  L V     +  GYGL+E+     F  L D
Sbjct: 282 SLRLA--------VTGAASMPVALLERFESELGVDI---VLTGYGLSEASGVTTFNRLDD 330

Query: 338 VFNMI-GTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEV 396
               + GT+G  +  VE ++  V E+G +       GE+ +RG  +  GYY  P+ T   
Sbjct: 331 DRKTVAGTIGTAIAGVENKI--VNELGEEVPVGEV-GELLVRGPNVMKGYYDDPEATAAA 387

Query: 397 I-VDGWFHTGDIGE 409
           I  DGW HTGD+G 
Sbjct: 388 IDADGWLHTGDLGR 401

Length = 513

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  140 bits (356), Expect = 3e-38
 Identities = 75/289 (25%), Positives = 112/289 (38%), Gaps = 69/289 (23%)

Query: 131 TIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD-QI 189
            I YTSGTTG PKG +LT++ ++    S+ +   +T     E D     +PL H++   +
Sbjct: 6   LIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRLGLT-----EGDRTLVPVPLFHVFGLVL 60

Query: 190 IETHCIHKGCSI---GFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGA 246
                +  G ++     +  D    +  I+  + T   GVP ++  +             
Sbjct: 61  GVLASLTAGATLVLMEKF--DPGAALRLIERERITALHGVPTMFIALLE----------- 107

Query: 247 LSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPI-H 305
                                      P  D    S +R          +SG AP+P   
Sbjct: 108 --------------------------HPDFDKFDLSSLR--------TGISGGAPVPPEL 133

Query: 306 VEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM--IGTVGVPMTTVEARLESVPEMG 363
           V         A +T GYG+TE+      +  D       GTVG P+  VE ++       
Sbjct: 134 VRRIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVGRPLPGVEVKIVD----- 188

Query: 364 YDALSSVP---RGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIG 408
                 VP    GEIC+RG ++  GYY  P+ T E I  DGW HTGD+G
Sbjct: 189 -PDGGEVPPGEVGEICVRGYSVMKGYYNDPEATAEAIDADGWLHTGDLG 236

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  139 bits (354), Expect = 5e-38
 Identities = 78/282 (27%), Positives = 124/282 (43%), Gaps = 61/282 (21%)

Query: 132 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIE 191
           I+YTSGTTG PKGV+LT++ ++A  ++        G   S  D Y    PL H    +  
Sbjct: 6   ILYTSGTTGRPKGVMLTHRNLLANAVNALA-----GVDLSPGDVYLLAAPLYHAAGGLFL 60

Query: 192 THCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKK 250
              +  G ++      D   +++ I+  + T    VP ++ R+                +
Sbjct: 61  LPALAAGGTVVLMPKFDPEAVLDLIERHRVTHTFLVPTMFQRLL---------------R 105

Query: 251 LFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFL 310
           L +FA  Y L +++                              ++ GAAP+P  ++  +
Sbjct: 106 LPDFA-RYDLSSLRL-----------------------------IIYGAAPMPAELKRAM 135

Query: 311 RVTSGAPLTQGYGLTESCSGCF-TSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSS 369
               G    QGYG+TE+       S  D    +G+VG P+  VE R+  V E G +    
Sbjct: 136 IEWFGPVFVQGYGMTETGPTTTLLSPEDWLRKLGSVGRPVPGVEVRI--VDEDGRE---- 189

Query: 370 VPR---GEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIG 408
           +P    GEI +RG  + +GY+ RP+ T E + DGW HTGD+G
Sbjct: 190 LPPGEVGEIVVRGPAVMAGYWNRPEATAEALRDGWLHTGDLG 231

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  133 bits (336), Expect = 2e-35
 Identities = 78/293 (26%), Positives = 121/293 (41%), Gaps = 69/293 (23%)

Query: 128 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH--- 184
           + + I+YTSGTTG+PKGVVL+++ ++A   ++ Q   +T     E D   S LPL H   
Sbjct: 1   DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLT-----EGDVLLSVLPLFHVVG 55

Query: 185 ----IYDQIIE--THCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGIS 238
               +   ++   T  +++G             +E I++ + T+  GVP +YD       
Sbjct: 56  GGSGLLGALLAGGTVVLYEG------FPFPLSFLELIEQYRVTVLFGVPTLYDA------ 103

Query: 239 NKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSG 298
                                               L  +        +    L+ ++SG
Sbjct: 104 ------------------------------------LAKAAEDRGYDLS---SLRLLISG 124

Query: 299 AAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLES 358
             PL   + E      GAP+ +GYGLTE+     T+        GTVG P+  VE R+  
Sbjct: 125 GEPLSPELLERFEERPGAPILEGYGLTETSVVTSTNPDSELKKPGTVGRPVPGVEVRV-- 182

Query: 359 VPEMGYDALSSVPRGEICLRGNTLFSGYYKR-PDLTEEVIVDGWFHTGDIGEW 410
           V E G   L     GE+ +RG  +  GY+   P+ T     DGW+ TGD+G  
Sbjct: 183 VDEEG-KPLPPGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWYRTGDLGYL 234

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score =  134 bits (340), Expect = 1e-34
 Identities = 126/459 (27%), Positives = 189/459 (41%), Gaps = 121/459 (26%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYV---PLYDTLGANAVEFIINHAEV 57
           +R+ GV PGDR  I   NCP+ I+A  A        V   PLY T       F  + A V
Sbjct: 74  LRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVEHNPLY-TAHELEHPFEDHGARV 132

Query: 58  SIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQ---------------KKEAEELG 102
           +I +   +K+   +  L R    L+TIVS  N+ ++                +K    L 
Sbjct: 133 AIVW---DKVAPTVERLRRT-TPLETIVS-VNMIAAMPLLQRLALRLPIPALRKARAALT 187

Query: 103 VSC---FSWEEFLQ---LGTLDCELPPK-KKTNISTIMYTSGTTGEPKGVVLTNQAIVAE 155
                   WE  +     G       P+    +++ I+YTSGTTG+PKG  LT++ + A 
Sbjct: 188 GPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFAN 247

Query: 156 VLSVDQMFVVTGK-----VCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIG-----FWR 205
                      GK     +    +   + LP+ H Y     T C+    SIG        
Sbjct: 248 AAQ--------GKAWVPGLGDGPERVLAALPMFHAYGL---TLCLTLAVSIGGELVLLPA 296

Query: 206 GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK 265
            D+  +++ +++  PT   GVP +Y++I              +++              +
Sbjct: 297 PDIDLILDAMKKHPPTWLPGVPPLYEKIA-----------EAAEE--------------R 331

Query: 266 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIH-VEEFLRVTSGAPLTQGYGL 324
           G+              S +R AF        SGA  LP+  VE + ++T G  L +GYGL
Sbjct: 332 GVD------------LSGVRNAF--------SGAMALPVSTVELWEKLTGGL-LVEGYGL 370

Query: 325 TESCSGCFTSLADVFNMI------GTVGVPMTTVEARLESVPEMGYDALSSVP---RGEI 375
           TE      TS   V N +      G VGVP    E R+   PE   D   ++P    GE+
Sbjct: 371 TE------TSPIIVGNPMSDDRRPGYVGVPFPDTEVRIVD-PE---DPDETMPDGEEGEL 420

Query: 376 CLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPME 414
            +RG  +F GY+ RP+ T +  +DGWF TGD+     ME
Sbjct: 421 LVRGPQVFKGYWNRPEETAKSFLDGWFRTGDVVV---ME 456

Length = 573

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score =  131 bits (333), Expect = 2e-34
 Identities = 89/292 (30%), Positives = 126/292 (43%), Gaps = 65/292 (22%)

Query: 128 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 187
           + + I+YTSGTTG PKGVVLT+  + A   ++ + +  T       D     LPL H++ 
Sbjct: 89  DPALIIYTSGTTGRPKGVVLTHGNLAANARALVEAWRWT-----ASDVLLHALPLHHVHG 143

Query: 188 QIIETHCIH-KGCSIGFW-RGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGG 245
                HC    G S+ F  R D +         + T+F GVP +Y R             
Sbjct: 144 LFNALHCPLWAGASVEFLPRFDPQERDALRLLPRITVFMGVPTIYTR------------- 190

Query: 246 ALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIH 305
                                        LL+   F     A    L+  +SG+A LP+ 
Sbjct: 191 -----------------------------LLEHYEFDDAAAAAARNLRLFVSGSAALPVP 221

Query: 306 V-EEFLRVTSGAPLTQGYGLTESCSGCFTSLA-----DVFNMIGTVGVPMTTVEARLESV 359
           V E +   T G  L + YG+TE      T +A     D     GTVG+P+  VE R+  V
Sbjct: 222 VLERWEERT-GHTLLERYGMTE------TGMALSNPLDGERRPGTVGLPLPGVEVRI--V 272

Query: 360 PEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHTGDIGEW 410
            E G + L++   GEI +RG  +FS Y+ +P+ T E    DGWF TGD+G  
Sbjct: 273 DEDGGEPLAAGEVGEIQVRGPNVFSEYWNKPEATAEAFTEDGWFKTGDVGVV 324

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score =  128 bits (325), Expect = 7e-33
 Identities = 86/318 (27%), Positives = 130/318 (40%), Gaps = 62/318 (19%)

Query: 99  EELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS 158
                S    +  L     +  +   K+ +++ + Y+SGTTG  KGV+LT++ ++A   +
Sbjct: 131 SADDGSAAIDDL-LFADEPEPPVVVIKQDDVAALPYSSGTTGRSKGVMLTHRNLIA---N 186

Query: 159 VDQMFVVTGKVCSEEDTYFSFLPLAHIYD-QIIETHCIHKGCSI----GFWRGDVRYLME 213
           V Q+    G     ED     LP+ HIY   +I    +  G ++     F   D+   + 
Sbjct: 187 VAQLVAGEGPNFDREDVTLCVLPMFHIYGLTVILLALLRLGATVVVMPRF---DLEKFLA 243

Query: 214 DIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAA 273
            I++ K T    VP +                AL K                        
Sbjct: 244 AIEKYKVTHLPVVPPIV--------------LALVKH----------------------- 266

Query: 274 PLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEE-FLRVTSGAPLTQGYGLTESCSGCF 332
           P++D    S         L+ + SGAAPL   + E F     G  L QGYG+TES     
Sbjct: 267 PIVDKYDLSS--------LKQIGSGAAPLGKELAEAFRARFPGVELGQGYGMTESSPVTT 318

Query: 333 TSLADVFNM-IGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPD 391
                  +   G+VG  +  VEA++   PE G ++L     GE+ +RG  +  GY   P+
Sbjct: 319 MCPVPEKDPKPGSVGRLVPNVEAKIVD-PETG-ESLPPNQPGELWVRGPQVMKGYLNNPE 376

Query: 392 LTEEVIV-DGWFHTGDIG 408
            T E I  DGW HTGD+G
Sbjct: 377 ATAETIDKDGWLHTGDLG 394

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score =  123 bits (311), Expect = 2e-31
 Identities = 90/367 (24%), Positives = 135/367 (36%), Gaps = 110/367 (29%)

Query: 59  IAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLD 118
           +A + +N I  +L  L    L L  +V   N    Q++            ++ L     D
Sbjct: 29  VALLAKNSIEFLLLFL--ALLRLGAVVLPLNPRLPQEE-----------LQQQLADLQPD 75

Query: 119 CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFS 178
            +         +TI++TSG+TG+PK VV T    +A      +   +T      +D +  
Sbjct: 76  LD-------RPATIIFTSGSTGKPKAVVHTWGNHLASARGSAENLGLT-----PDDNWLL 123

Query: 179 FLPLAHIYDQIIETHCIHKGCSIGFWRG-------------DVRYLMEDIQELKPTMFSG 225
            LPL H+            G +I   R              D   + E ++    T  S 
Sbjct: 124 SLPLFHV-----------SGLAI-VMRSLLAGGALVLPDKFDAEAIAEALENHGVTHISL 171

Query: 226 VPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIR 285
           VP    R+       + S GA                       +               
Sbjct: 172 VPTQLQRL-------LESLGA-------------------RWLSS--------------- 190

Query: 286 EAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVF-NMIGT 344
                 L+A+L G AP+P  + E  R   G PL   YG+TE+ S   T   D F   +G+
Sbjct: 191 ------LRAVLLGGAPIPPSLLEQAR-QRGIPLYPTYGMTETASQVATLKPDDFLAKLGS 243

Query: 345 VGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHT 404
           VG P+   E R+ +  +           GEI +RG +LF GY  +  LT  +  DGWFHT
Sbjct: 244 VGKPLPGRELRIVNPQD-----------GEILVRGPSLFLGYLPQGGLTPPLDEDGWFHT 292

Query: 405 GDIGEWQ 411
           GD+G   
Sbjct: 293 GDLGYLD 299

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score =  119 bits (301), Expect = 2e-29
 Identities = 114/445 (25%), Positives = 163/445 (36%), Gaps = 112/445 (25%)

Query: 2   RSRGVNPGDRCGIYGSNCPEWIIAMEA----CNSQAITYVPLYDTLGANAVEFIINHAEV 57
              G+  GD   +   N P     +EA      + A+  VPL   L A+ + FI+NH+E 
Sbjct: 47  SKLGIGKGDVVAVLAPNTPA---MLEAHFGVPMAGAV-LVPLNTRLDADDIAFILNHSEA 102

Query: 58  SIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTL 117
            + FV +  +      L    L  K I+    +  S   E  E G     +E+ L  G  
Sbjct: 103 KVLFVDQEFLSLAEEALAL--LSTKEIIDTEIIVISPAAEDSEEG----DYEDLLAGGDP 156

Query: 118 D-CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTY 176
           D   +PP  + +  ++ YTSGTTG PKGVV T++      L     + +          Y
Sbjct: 157 DPLPIPPDDEWDPISLNYTSGTTGNPKGVVYTHRGAYLNALGNVIEWGMPD-----RPVY 211

Query: 177 FSFLPLAHI--------YDQIIETH-CIHKGCSIGFWRGDVRY--LMEDIQELKPTMFSG 225
              LP+ H            +  TH C+ K          V    + + I++ K T   G
Sbjct: 212 LWTLPMFHCNGWCFPWAITAVGGTHVCLRK----------VDAPAIYDLIEKHKVTHLCG 261

Query: 226 VPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIR 285
            P V                                NM    P+    P           
Sbjct: 262 APTVL-------------------------------NMLANAPEADKLP----------- 279

Query: 286 EAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFT----------- 333
                 ++ M +GA P P  V    ++   G  +T  YGLTE   G  T           
Sbjct: 280 --LPRPVRVMTAGAPP-PPAV--IKKMEELGFEVTHVYGLTE-TYGPITVCEWKPEWDAL 333

Query: 334 SLADVFNMIGTVGVPMTTVEARLESV-PEMGYDALSSVPR-----GEICLRGNTLFSGYY 387
              +   +    GV    +E  ++ V PE   D    VPR     GEI +RGNT+  GYY
Sbjct: 334 PAEERARLKARQGVRYVGLEE-VDVVDPETMKD----VPRDGKTIGEIVMRGNTVMKGYY 388

Query: 388 KRPDLTEEVIVDGWFHTGDIGEWQP 412
           K P+ TEE    GWFH+GD+    P
Sbjct: 389 KNPEATEEAFAGGWFHSGDLAVVHP 413

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score =  117 bits (294), Expect = 6e-29
 Identities = 91/420 (21%), Positives = 154/420 (36%), Gaps = 113/420 (26%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           ++++G+  G R  + G N  E ++ + AC             L   A   ++N       
Sbjct: 16  LKAQGIRSGSRVALVGQNSIEMVLLLHAC-------------LLLGAEIAMLNTR----- 57

Query: 61  FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE 120
            + EN+  + L  L          V               L  S    ++F        E
Sbjct: 58  -LTENERTNQLEDLD---------VQLL------------LTDSLLEEKDFQADSLDRIE 95

Query: 121 LPPKKKTNIS---------TIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCS 171
              + +T++S         T+M+TSGTTG+PK V  T +   A  +   +    T     
Sbjct: 96  AAGRYETSLSASFNMDQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENLGFT----- 150

Query: 172 EEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYD 231
           E+D +   LPL HI    I    + +G ++       + L+E I   + T  S VP   +
Sbjct: 151 EDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKFNQ-LLEMIANERVTHISLVPTQLN 209

Query: 232 RIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGR 291
           R+                             + +G                         
Sbjct: 210 RL-----------------------------LDEGGHNE--------------------N 220

Query: 292 LQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTT 351
           L+ +L G + +P  + E  +   G P+   YG+TE+CS   T+  ++ +    VG P+  
Sbjct: 221 LRKILLGGSAIPAPLIEEAQ-QYGLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLAG 279

Query: 352 VEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQ 411
            E +++   + G+        GEI ++G  L  GY  + +LT      GWF+TGDIGE  
Sbjct: 280 REIKIKVDNKEGH--------GEIMVKGANLMKGYLYQGELTPAFEQQGWFNTGDIGELD 331

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score =  117 bits (293), Expect = 2e-28
 Identities = 90/292 (30%), Positives = 137/292 (46%), Gaps = 54/292 (18%)

Query: 120 ELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSE-EDTYFS 178
           E+P   + +++ + YT GTTG PKGV+LT++ +V+  L    M V     C E E+    
Sbjct: 199 EVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTL----MGVQWLYNCKEGEEVVLG 254

Query: 179 FLPLAHIYDQI-IETHCIHKGCSIGFW-RGDVRYLMEDIQELKPTMFSGVPRVYDRIYTG 236
            LP  H+Y    +    I +G  +    + D++ + E I++ K T+F G P     IY  
Sbjct: 255 VLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPT----IYIA 310

Query: 237 ISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAML 296
           + N                                 +PLL     S IR        A +
Sbjct: 311 LLN---------------------------------SPLLKEYDISSIR--------ACI 329

Query: 297 SGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARL 356
           SG+APLP+ V+E     +G  L +GYGLTES     ++      + G++GVP    EA +
Sbjct: 330 SGSAPLPVEVQEKFETVTGGKLVEGYGLTESSPVTHSNFLWEKRVPGSIGVPWPDTEAMI 389

Query: 357 ESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIG 408
            S+ E G +AL     GEI ++G  +  GY+ +P+ T  V+ DGW HTGD+G
Sbjct: 390 MSL-ETG-EALPPGEIGEIVVKGPQIMKGYWNKPEETAAVLQDGWLHTGDVG 439

Length = 563

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score =  116 bits (292), Expect = 3e-28
 Identities = 86/423 (20%), Positives = 137/423 (32%), Gaps = 88/423 (20%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           ++  G   GDR  IY  N PE +IA+ A          +   L A AV   I      + 
Sbjct: 57  LKDLGGVKGDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVL 116

Query: 61  FVQENKIPSILSCLPRCCLYLKTIVSFANV--SSSQKKEAEELGVSCFSWEEFLQLGTLD 118
              +                 K I    +     S       LG     ++E ++  +  
Sbjct: 117 IADD-------GTFRN----GKEIALLEDADAVLSSVVVVPRLG---LWYDEAVEKASEK 162

Query: 119 CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFS 178
            E  P    +   ++YTSGTTG+PKG+V ++   + E       F          D +++
Sbjct: 163 FEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRL-TAKFHGDLL---PGDRFWN 218

Query: 179 FLPLAHIYDQIIETHCI----HKGCSIGFWRGDVRY----LMEDIQELKPTMFSGVPRVY 230
                 IY      + +      G +   + G   Y    L E +++ K T+F   P   
Sbjct: 219 SSDPGWIYGL---WYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFL 275

Query: 231 DRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGG 290
            R+                             MK G+         +    S +R     
Sbjct: 276 RRL-----------------------------MKLGLG--------EPYDLSSLR----- 293

Query: 291 RLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMT 350
               + S   PL     E+     G  +   YG TE+  G       V N  G+ G+P+ 
Sbjct: 294 ---VLGSAGEPLNPEAFEWFYSALGVWILDIYGQTETGMGFIAGRPPVKN--GSSGLPLP 348

Query: 351 TVEARLESVPEMGYDALSSVP--RGEICLRGNT--LFSGYYKRPDLTEEVIVDGWFHTGD 406
               R         D  + VP   GE+ +R     +   Y+  P+  +E     W+ TGD
Sbjct: 349 GYAVRRV------DDEGNPVPPGVGELVVRLPWPGMALTYWNDPERYKEAYFGRWYRTGD 402

Query: 407 IGE 409
             E
Sbjct: 403 WAE 405

Length = 528

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score =  114 bits (288), Expect = 6e-28
 Identities = 83/289 (28%), Positives = 123/289 (42%), Gaps = 75/289 (25%)

Query: 132 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIE 191
           I+YTSGTTG PKGVVL+ +AI A++ ++ + +  T      +D     LPL H++  ++ 
Sbjct: 133 IVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTA-----DDVLVHGLPLFHVHGLVLG 187

Query: 192 THCIHKGCSIGFWR--GDVRYLMEDIQE-------LKPTMFSGVPRVYDRIYTGISNKIS 242
                    +G  R      +      E          T++ GVP V+ RI    +    
Sbjct: 188 V--------LGPLRIGNRFVHTGRPTPEAYAQALSEGGTLYFGVPTVWSRI----AADPE 235

Query: 243 SGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPL 302
           +  AL                                         G RL  ++SG+A L
Sbjct: 236 AARALR----------------------------------------GARL--LVSGSAAL 253

Query: 303 PIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARL--ESVP 360
           P+ V + L   +G    + YG+TE+     ++ AD     G VG+P+  VE RL  E   
Sbjct: 254 PVPVFDRLAALTGHRPVERYGMTETLITL-STRADGERRPGWVGLPLAGVETRLVDEDGG 312

Query: 361 EMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHTGDIG 408
            + +D   +V  GE+ +RG TLF GY  RPD T      DGWF TGD+ 
Sbjct: 313 PVPHDG-ETV--GELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVA 358

Length = 471

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score =  111 bits (281), Expect = 1e-27
 Identities = 78/291 (26%), Positives = 119/291 (40%), Gaps = 78/291 (26%)

Query: 132 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIE 191
           I++TSGTTG PKGV LT++ ++A   ++ +   +T       D   + +PL HI+  I+ 
Sbjct: 7   ILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKLT-----PSDRCLNVMPLFHIHGLIVS 61

Query: 192 T-HCIHKGCSI---------GFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKI 241
               +  G S+          FW        +DI + + T +S VP              
Sbjct: 62  LLATLLAGGSVVCPPKFSASKFW--------DDIAKYRVTWYSAVP-------------- 99

Query: 242 SSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAP 301
                + + L + A         K  P          L F  IR           S +AP
Sbjct: 100 ----TIHQILLKTA---------KPNPGKPPP----RLRF--IR-----------SASAP 129

Query: 302 LPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTS-LADVFNMIGTVGVPMTTVEARLESVP 360
           LP  V + L    G P+ + YG+TE+     ++ L  +    G+VG P   VE  +    
Sbjct: 130 LPPAVLDRLEKRFGVPVLEAYGMTEAAHQIASNPLPPLVRKPGSVGRP-AGVEVAI---- 184

Query: 361 EMGYDALSSVP---RGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIG 408
            +  D    +P    GEI +RG  + +GY   P+   E   DGWF TGD+G
Sbjct: 185 -LD-DDGRPLPPGQEGEIVIRGPNVTAGYLNNPEANREAFRDGWFRTGDLG 233

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score =  108 bits (273), Expect = 6e-26
 Identities = 109/413 (26%), Positives = 158/413 (38%), Gaps = 97/413 (23%)

Query: 3   SRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFV 62
           + GV  GDR  +   N  E I+ + A        V L   L    + + ++ AEV     
Sbjct: 46  ALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLLNTRLSREELLWQLDDAEVKCLIT 105

Query: 63  QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP 122
            ++             L     V FA + +  K+EAE         EEF     LD    
Sbjct: 106 DDDFEAK---------LIPGISVKFAELMNGPKEEAEIQ-------EEF----DLD---- 141

Query: 123 PKKKTNISTIMYTSGTTGEPKGVVLT--NQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 180
                 ++TIMYTSGTTG+PKGV+ T  N    A V S   + +      +E+D + + +
Sbjct: 142 -----EVATIMYTSGTTGKPKGVIQTYGNHWWSA-VGSALNLGL------TEDDCWLAAV 189

Query: 181 PLAHIYDQIIETHCIHKGCSI----GFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTG 236
           P+ HI    I    +  G  +     F   D   + + +Q    T+ S V  +  R    
Sbjct: 190 PIFHISGLSILMRSVIYGMRVVLVEKF---DAEKINKLLQTGGVTIISVVSTMLQR---- 242

Query: 237 ISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAML 296
                     L ++L E  Y      M           LL            GG      
Sbjct: 243 ----------LLERLGEGTYPSSFRCM-----------LL------------GG------ 263

Query: 297 SGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFT-SLADVFNMIGTVGVPMTTVEAR 355
            G AP P+  +   +   G P+ Q YG+TE+ S   T S  D    +G+ G P+   E +
Sbjct: 264 -GPAPKPLLEQCKEK---GIPVYQSYGMTETASQIVTLSPEDALTKLGSAGKPLFPCELK 319

Query: 356 LESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIG 408
           +E         +     GEI ++G  +  GY  R D T E   DGWF TGDIG
Sbjct: 320 IEK----DGVVVPPFEEGEIVVKGPNVTKGYLNREDATRETFQDGWFKTGDIG 368

Length = 483

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score =  107 bits (270), Expect = 2e-25
 Identities = 102/427 (23%), Positives = 155/427 (36%), Gaps = 117/427 (27%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           +R RG   G+R  +   N    +    AC      YVPL   L A+ ++ ++  AE    
Sbjct: 39  LRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRLSASELDALLQDAEP--R 96

Query: 61  FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE 120
            +  +   +                  A   +S          S                
Sbjct: 97  LLLGDDAVAAGRTDV---------EDLAAFIASADALEPADTPS---------------- 131

Query: 121 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 180
           +PP++   +S I++TSGT+G+PKGV+L+ + +     +    F V G+V    D + SFL
Sbjct: 132 IPPER---VSLILFTSGTSGQPKGVMLSERNLQQTAHN----FGVLGRV----DAHSSFL 180

Query: 181 ---PLAHIYDQI--IETHCIHKGC---SIGF-------WRGDVRYLMEDIQELKPTMFSG 225
              P+ HI   I  +       G    S GF         GD          L  T +  
Sbjct: 181 CDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGRLGD--------PALGITHYFC 232

Query: 226 VPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIR 285
           VP++                                   +  P   AA L          
Sbjct: 233 VPQMAQAF-------------------------------RAQPGFDAAAL---------- 251

Query: 286 EAFGGRLQAMLSGAAPLPIHVEEFLR--VTSGAPLTQGYGLTESCS--GCFTSLADVFNM 341
                 L A+ +G AP   H  E +   +  G P+  G+G++E+ +  G       +   
Sbjct: 252 ----RHLTALFTGGAP---HAAEDILGWLDDGIPMVDGFGMSEAGTVFGMSVDCDVIRAK 304

Query: 342 IGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-DG 400
            G  G+P  TV+ R+  V + G D  + VP GE+ LRG  L  GY++RP  T      DG
Sbjct: 305 AGAAGIPTPTVQTRV--VDDQGNDCPAGVP-GELLLRGPNLSPGYWRRPQATARAFTGDG 361

Query: 401 WFHTGDI 407
           WF TGDI
Sbjct: 362 WFRTGDI 368

Length = 488

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score =  106 bits (267), Expect = 4e-25
 Identities = 71/297 (23%), Positives = 110/297 (37%), Gaps = 68/297 (22%)

Query: 121 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 180
           L   K  + + I++TSG+ G PKGVVL+++ ++A +  +  +        + ED     L
Sbjct: 139 LAGAKPDDPAVILFTSGSEGLPKGVVLSHRNLLANIDQIAAVID-----LNTEDVLLGAL 193

Query: 181 PLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELK------PTMFSGVPR-VYDRI 233
           PL H +           G ++          +  +  L+      P     +   + D  
Sbjct: 194 PLFHAF-----------GLTVTLL-------LPLLTGLRVVYYPNPLDAKKIAELIRDYK 235

Query: 234 YTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQ 293
            T +              F         N                  FS +R        
Sbjct: 236 ATIL---------CGTPTF---LRGYARNAHPED-------------FSSLRLVV----- 265

Query: 294 AMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVE 353
              +GA  LP    E      G  + +GYG TE CS   +    + N  GTVG P+  +E
Sbjct: 266 ---AGAEKLPEATRELFEEKFGIRILEGYGATE-CSPVISVNTPMGNKPGTVGRPLPGIE 321

Query: 354 ARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV--DGWFHTGDIG 408
            R+ S     ++ L     G + +RG  + SGY    + T EV V  DGW+ TGDIG
Sbjct: 322 VRIVSPE--THEELPIGEGGLLLVRGPNVMSGYLNNEEKTSEVEVLGDGWYDTGDIG 376

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score =  104 bits (261), Expect = 2e-24
 Identities = 83/287 (28%), Positives = 114/287 (39%), Gaps = 66/287 (22%)

Query: 132 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI--YDQI 189
           ++YTSGTTGEPKGV+ T+  ++AEV S  +   +T      +D      PLAHI  +   
Sbjct: 98  LLYTSGTTGEPKGVMHTHNTLLAEVRSYVERLGLT-----PDDVVLMPSPLAHITGFLYG 152

Query: 190 IETHCIHKGCS-IGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALS 248
           +E   +  G + +   R D    +E I+E   T   G                       
Sbjct: 153 LEL-PLLLGATVVLQDRWDPARALELIREHGVTFTMGAT--------------------- 190

Query: 249 KKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLP-IHVE 307
                F  +  L         + A P L SL             +  L G AP+P     
Sbjct: 191 ----PFLAD--LLAA-----ADAAGPDLPSL-------------RVFLCGGAPVPRELAR 226

Query: 308 EFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMI-GTVGVPMTTVEARLESVPEMGYDA 366
                  GA + + YG+TE       +  D  +    T G P+  VE R+  V + G D 
Sbjct: 227 RAAEAL-GAKVVRAYGMTEVPLVTVGTPDDPDDKRAATDGRPVPGVEVRI--VDDDGND- 282

Query: 367 LSSVPR---GEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEW 410
              VP    GE+ +RG  LF GY   PD TE    DGWF TGD+G  
Sbjct: 283 ---VPPGEEGELQVRGPQLFLGYLDPPDNTEAFTDDGWFRTGDLGRL 326

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score =  104 bits (261), Expect = 2e-24
 Identities = 92/416 (22%), Positives = 152/416 (36%), Gaps = 99/416 (23%)

Query: 5   GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE 64
            V  G+R  I   N  E+I+ + A        VPL   L  N + F +  +  ++ FV++
Sbjct: 49  NVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEK 108

Query: 65  NKIPSILSCLPRCCLYLKTIVSFANVSSS-QKKEAEELGVSCFSWEEFLQLGTLDCELPP 123
                                +F N++ S QK    +  +S  S +E       +     
Sbjct: 109 ---------------------TFQNMALSMQKVSYVQRVISITSLKEIEDRKIDNFVEKN 147

Query: 124 KKKTNISTIMYTSGTTGEPKGVVLTNQAI----VAEVLSVDQMFVVTGKVCSEEDTYFSF 179
           +  + I  I YTSGTTG+PKG VLT + +    +    ++D          +  D     
Sbjct: 148 ESASFI--ICYTSGTTGKPKGAVLTQENMFWNALNNTFAID---------LTMHDRSIVL 196

Query: 180 LPLAHIYDQIIET--HCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGI 237
           LPL HI    +         G  I   + +    +  I++ K T+  GVP ++  +    
Sbjct: 197 LPLFHIGGIGLFAFPTLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQAL---- 252

Query: 238 SNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLS 297
                                                  ++     +R  +        +
Sbjct: 253 ---------------------------------INCSKFETTNLQSVRWFY--------N 271

Query: 298 GAAPLPIHVEEFLR--VTSGAPLTQGYGLTESCSGCFTSLADVF-NMIGTVGVPMTTVEA 354
           G AP P   EE +R  +  G    QG+G+TE+    F    +     +G++G P+   + 
Sbjct: 272 GGAPCP---EELMREFIDRGFLFGQGFGMTETSPTVFMLSEEDARRKVGSIGKPVLFCDY 328

Query: 355 RLESVPEMGYDALSSVPRG---EICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDI 407
            L        +  + V  G   E+ +RG  +   Y+ RPD TEE I DGW  TGD+
Sbjct: 329 ELID------ENKNKVEVGEVGELLIRGPNVMKEYWNRPDATEETIQDGWLCTGDL 378

Length = 496

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score =  104 bits (260), Expect = 4e-24
 Identities = 78/288 (27%), Positives = 131/288 (45%), Gaps = 60/288 (20%)

Query: 128 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 187
           +I+ + YT GTTG  KG +LT++ +VA +    Q    TGK+    +   + LPL HI+ 
Sbjct: 209 DIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHIFA 268

Query: 188 QIIETHCIHK--GCS--IGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISS 243
                    K  GC+  I   R D+   ++++++ + T F+GV    + ++ G+ N    
Sbjct: 269 LTANGLVFMKIGGCNHLISNPR-DMPGFVKELKKTRFTAFTGV----NTLFNGLLN---- 319

Query: 244 GGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLP 303
                                         P  D + FS ++   GG +    S A    
Sbjct: 320 -----------------------------TPGFDQIDFSSLKMTLGGGMAVQRSVA---- 346

Query: 304 IHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMG 363
              E + +VT G  L + YGLTE+      +   +    G++G+P+ + +A ++      
Sbjct: 347 ---ERWKQVT-GLTLVEAYGLTETSPAACINPLTLKEYNGSIGLPIPSTDACIKD----- 397

Query: 364 YDALSSVPRGEI---CLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDI 407
            DA + +  GEI   C++G  +  GY+KRP+ T +V+  DGW HTGDI
Sbjct: 398 -DAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGDI 444

Length = 560

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score = 96.2 bits (240), Expect = 1e-21
 Identities = 65/289 (22%), Positives = 104/289 (35%), Gaps = 71/289 (24%)

Query: 132 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIE 191
           I YTSGTTG PKG + T++ ++A   +      +T      +    +FLPL H+      
Sbjct: 89  IPYTSGTTGLPKGCMHTHRTVLATAAASAAWSGLT-----PDSVLLAFLPLFHVAG---M 140

Query: 192 THCIHKGCSIG-----FWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGA 246
              ++     G       R D       I+  + T ++ +                    
Sbjct: 141 QGSMNAPIYTGATLVLLTRWDREAAARAIERYRVTHWTNIV------------------- 181

Query: 247 LSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV 306
                                       LL      +  +     L+ +  G A LP  V
Sbjct: 182 -----------------------TMVVDLLAHP---RFADYDLSSLKVVGGGGAALPPAV 215

Query: 307 EEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEAR---LESVPEMG 363
            E L+  +G    +GYGLTE+ + C             +G+P+   +AR    E+  E+ 
Sbjct: 216 AERLKALTGLLYEEGYGLTETHT-CTHFNPPDRPKPQCLGIPVFGTDARVIDPETGEELP 274

Query: 364 YDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV----DGWFHTGDIG 408
                    GEI +RG  +F GY+ RP+ T E  +      +F TGD+G
Sbjct: 275 ---PGEE--GEIVVRGPQVFKGYWNRPEATAESFIELDGKRFFRTGDLG 318

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score = 94.7 bits (236), Expect = 5e-21
 Identities = 91/296 (30%), Positives = 127/296 (42%), Gaps = 82/296 (27%)

Query: 134 YTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKV----CSEEDTYFSFLPLAHIYDQI 189
           Y+SGTTG PKGV+LT++ +V    SV Q   V G+        +D     LP+ HIY   
Sbjct: 186 YSSGTTGLPKGVMLTHKGLVT---SVAQQ--VDGENPNLYFHSDDVILCVLPMFHIY--- 237

Query: 190 IETHCI-----HKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISS 243
              + +       G +I      ++  L+E IQ  K T+   VP +              
Sbjct: 238 -SLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPI-------------- 282

Query: 244 GGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLP 303
                  +   A +                P+++    S IR         +LSGAAPL 
Sbjct: 283 -------VLAIAKS----------------PVVEKYDLSSIR--------MVLSGAAPLG 311

Query: 304 IHVEEFLRVT-SGAPLTQGYGLTES---CSGCFTSLADVFNM-IGTVGVPMTTVE-ARLE 357
             +E+  R     A L QGYG+TE+    + C     + F +  G+ G   T V  A L+
Sbjct: 312 KELEDAFRAKLPNAVLGQGYGMTEAGPVLAMCLAFAKEPFPVKSGSCG---TVVRNAELK 368

Query: 358 SV-PEMGYDALSSVPR---GEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIG 408
            V PE G    +S+PR   GEIC+RG  +  GY   P+ T   I  DGW HTGDIG
Sbjct: 369 IVDPETG----ASLPRNQPGEICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDIG 420

Length = 537

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 94.7 bits (236), Expect = 5e-21
 Identities = 87/302 (28%), Positives = 124/302 (41%), Gaps = 96/302 (31%)

Query: 134 YTSGTTGEPKGVVLTNQAIVAEVLS--------------VDQMFVVTGKVCSEEDTYFSF 179
           YT GTTG  KG  L ++ IVA VL                DQ+  V              
Sbjct: 211 YTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCA------------ 258

Query: 180 LPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMED-------IQELKPTMFSGVPRVYDR 232
           LPL HI+     T C      +G   G    L+ +       I+ELK       P V + 
Sbjct: 259 LPLYHIFAL---TVC----GLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAV-NT 310

Query: 233 IYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRL 292
           +Y  + N                                  P  D L FSK+  A GG +
Sbjct: 311 LYNALLN---------------------------------NPDFDKLDFSKLIVANGGGM 337

Query: 293 QAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTES--CSGCFTSLADVFNMIGTVGVPMT 350
            A+    A      E +L +T G P+T+GYGL+E+   + C    A  F+  GT+G+P+ 
Sbjct: 338 -AVQRPVA------ERWLEMT-GCPITEGYGLSETSPVATCNPVDATEFS--GTIGLPLP 387

Query: 351 TVEARLESVPEMGYDALSSVPRG---EICLRGNTLFSGYYKRPDLTEEVIV-DGWFHTGD 406
           + E  +        D  + +P G   EIC+RG  + +GY+ RPD T +V+  DG+F TGD
Sbjct: 388 STEVSIRD------DDGNDLPLGEPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGD 441

Query: 407 IG 408
           +G
Sbjct: 442 VG 443

Length = 557

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score = 94.3 bits (234), Expect = 7e-21
 Identities = 78/307 (25%), Positives = 127/307 (41%), Gaps = 54/307 (17%)

Query: 107 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVT 166
           ++ +F++      E P     +++ + YT GTTG PKG +LT+  + + V   D     +
Sbjct: 172 TYADFVKGAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPS 231

Query: 167 GKVCSEEDTYFSFLPLAHIYD-QIIETHCIHKGCSIGF-WRGDVRYLMEDIQELKPTMFS 224
                + +     LPL HIY   +I    + +G  I    R DV  +  DI+E + T+F 
Sbjct: 232 RATRGDVERVICVLPLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFP 291

Query: 225 GVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKI 284
           GVP ++  +                                        P L+    S  
Sbjct: 292 GVPTMWIAL-------------------------------------ANDPSLEKRDLSS- 313

Query: 285 REAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGT 344
                  L  + SG APLP+ V  F    +G  L  G+G+TE+CS       +  +  G+
Sbjct: 314 -------LATIGSGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPEGPDKPGS 366

Query: 345 VGVPMTTVEARLESVPEMGYDALSSVPRGEIC---LRGNTLFSGYYKRPDLTEEVIVDGW 401
           +G+ +  +E  + S+     D    +P GE+    +RG  +  GY+ RP+ + E  V   
Sbjct: 367 IGLMLPGIELDVVSLD----DPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDR 422

Query: 402 FHTGDIG 408
           F TGDIG
Sbjct: 423 FLTGDIG 429

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 90.4 bits (225), Expect = 5e-20
 Identities = 68/291 (23%), Positives = 110/291 (37%), Gaps = 73/291 (25%)

Query: 135 TSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIET-H 193
           T GTTG PK    +++  VA       +  +        D   + LPL H+   I+    
Sbjct: 10  TGGTTGAPKLARHSHRNEVANAWMAALLSGLG-----PGDVLLNGLPLFHVGGAIVTGLA 64

Query: 194 CIHKGCSIGF-----WRGD--VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGA 246
            + +G ++       +R    V    + ++  + T+ S VP V                A
Sbjct: 65  PLARGATVVLPTPSGFRNPAVVANFWKIVERYRVTLLSAVPTVL--------------AA 110

Query: 247 LSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV 306
           L                          PL D+ + S +R          L+GAAPLP+ V
Sbjct: 111 L-----------------------LQVPLGDADI-SSLR--------YALTGAAPLPVEV 138

Query: 307 EEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPM--TTVE-ARLESVPEMG 363
                  +G P+ +GYG+TE       +        G+VG+ +  T V  A+L++   +G
Sbjct: 139 ARRFEAVTGVPVVEGYGMTEGTGVSAINPRGGPRRPGSVGLRLPYTRVRVAKLDAGGALG 198

Query: 364 YDALSSVPRGEICLRGNTLFSGYYKRPDLTEE-----VIVDGWFHTGDIGE 409
            D       G + +RG  +F GY     L +       + DGW +TGD+G 
Sbjct: 199 RDCAPGEV-GVLAIRGPNVFPGY-----LNDAHNAGARLEDGWLNTGDLGR 243

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 90.0 bits (223), Expect = 2e-19
 Identities = 83/436 (19%), Positives = 133/436 (30%), Gaps = 122/436 (27%)

Query: 2   RSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAF 61
            S GV PG+   I      E ++A+ A       YVPL     A  + +I+  +  ++  
Sbjct: 270 ISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLL 329

Query: 62  VQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCEL 121
            Q +     L         L    + + +  +       LG                   
Sbjct: 330 TQAH-----LRVDDVGLPGLALDDALSEIPDTDPIPQALLG------------------- 365

Query: 122 PPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLP 181
                  ++ I+YTSG+TG+PKGV + ++A+   +      F +       +D   +   
Sbjct: 366 -----DALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLD-----ADDRVLALAS 415

Query: 182 LAHIYDQIIETHCIHKGCSIGF--------WRGDVRYLMEDIQELKPTMFSGVPRVYDRI 233
           L+           I      G          + D   L+E ++    T+   VP      
Sbjct: 416 LSF----DASVFEIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVP------ 465

Query: 234 YTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQ 293
                                     L  +           LL + +   +      RL+
Sbjct: 466 -------------------------LLLRL-----------LLLAALAPDLISP-CERLR 488

Query: 294 AMLSGAAPLPIHV--EEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTT 351
            +LSG   LP+ +             L   YG TE                 T+  P   
Sbjct: 489 QLLSGGEALPLALVQRLLQLAALARRLLNLYGPTE----------------ATLDAPSFP 532

Query: 352 VEARLESVPEMGY-----------DALSSVP---RGEICLRGNTLFSGYYKRPDLTEE-V 396
           + A LES   +G              L  +P    GE+ + G  L  GY  RPDLT E  
Sbjct: 533 ISAELESRVPIGRPVANTQLYILDQGLRPLPLGVPGELYIAGLGLALGYLNRPDLTAERF 592

Query: 397 IVDGWFHTGDIGEWQP 412
           I    + TGD+     
Sbjct: 593 IALRLYRTGDLARPLA 608

Length = 642

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score = 86.8 bits (215), Expect = 2e-18
 Identities = 112/451 (24%), Positives = 168/451 (37%), Gaps = 123/451 (27%)

Query: 4   RGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVS----- 58
            GV PGDR GI+  NC EW++   A        V +     A+ +E+ +  + V      
Sbjct: 65  LGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYRASELEYALGQSGVRWVICA 124

Query: 59  --------IAFVQE------NKIPSILSC--LPRCCLYLKTIVSFANVSSS-----QKKE 97
                    A +QE         P  L+C  LP     L+ +VS A           + +
Sbjct: 125 DAFKTSDYHAMLQELLPGLAEGQPGALACERLPE----LRGVVSLAPAPPPGFLAWHELQ 180

Query: 98  AEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLT------NQA 151
           A    VS  +  E  +  +LD + P         I YTSGTTG PKG  L+      N  
Sbjct: 181 ARGETVSREALAE--RQASLDRDDP-------INIQYTSGTTGFPKGATLSHHNILNNGY 231

Query: 152 IVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIET-HCIHKGCSIGFWRG--DV 208
            VAE L +           +E D     +PL H +  ++    C+  G  + +     D 
Sbjct: 232 FVAESLGL-----------TEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDP 280

Query: 209 RYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMP 268
              ++ ++E + T   GVP ++                    + E  +            
Sbjct: 281 LATLQAVEEERCTALYGVPTMF--------------------IAELDH------------ 308

Query: 269 QNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG---APLTQGYGLT 325
                P   +   S +R          +   AP PI V    RV      A +   YG+T
Sbjct: 309 -----PQRGNFDLSSLRTG--------IMAGAPCPIEVMR--RVMDEMHMAEVQIAYGMT 353

Query: 326 ESCSGCF-TSLADVFNM-IGTVGVPMTTVEARLESVPEMGYDAL-SSVPRGEI---CLRG 379
           E+      T+ AD     + TVG     +E ++        D   ++VPRGEI   C RG
Sbjct: 354 ETSPVSLQTTAADDLERRVETVGRTQPHLEVKV-------VDPDGATVPRGEIGELCTRG 406

Query: 380 NTLFSGYYKRPDLTEEVI-VDGWFHTGDIGE 409
            ++  GY+  P+ T E I  DGW HTGD+  
Sbjct: 407 YSVMKGYWNNPEATAESIDEDGWMHTGDLAT 437

Length = 558

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score = 86.2 bits (214), Expect = 4e-18
 Identities = 71/303 (23%), Positives = 112/303 (36%), Gaps = 73/303 (24%)

Query: 122 PPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLP 181
            P    +++   +T GTTG PK    T+   VA       +  +        DT F  LP
Sbjct: 208 RPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLG-----PGDTVFCGLP 262

Query: 182 LAHIYDQI-IETHCIHKGCSIGF-----WRGD--VRYLMEDIQELKPTMFSGVPRVYDRI 233
           L H+   +      + +G  +       +RG   +    + ++  +    SGVP VY   
Sbjct: 263 LFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVY--- 319

Query: 234 YTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQ 293
                       AL +                 +P +     + SL ++           
Sbjct: 320 -----------AALLQ-----------------VPVD--GHDISSLRYA----------- 338

Query: 294 AMLSGAAPLPIHV-EEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTV 352
             L GAAPLP+ V   F   T G  + +GYGLTE+      +  D    IG+VG+ +   
Sbjct: 339 --LCGAAPLPVEVFRRFEAAT-GVRIVEGYGLTEATCVSSVNPPDGERRIGSVGLRLPYQ 395

Query: 353 EARLESVPEMGYDALSSVPR--GEICLRGNTLFSGYYKRPDLTEE-----VIVDGWFHTG 405
             R+  + + G           G +C+ G  +FSGY     L         + DGW +TG
Sbjct: 396 RVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGY-----LEAAHNKGLWLEDGWLNTG 450

Query: 406 DIG 408
           D+G
Sbjct: 451 DLG 453

Length = 632

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score = 86.0 bits (213), Expect = 4e-18
 Identities = 76/298 (25%), Positives = 127/298 (42%), Gaps = 73/298 (24%)

Query: 128 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 187
           +++ + YT GTTG  KG +LT++ +VA +L    +  +   +    +   + LPL HIY 
Sbjct: 208 DVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRAL--MGSNLNEGCEILIAPLPLYHIY- 264

Query: 188 QIIETHCIHKGCSIGFWRGDVRYLMED-------IQELKPTMFSGVPRVYDRIYTGISNK 240
                   H  C      G+   L+ +       ++EL    FSG        + G++  
Sbjct: 265 ----AFTFH--CMAMMLIGNHNILISNPRDLPAMVKELGKWKFSG--------FVGLNT- 309

Query: 241 ISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAA 300
                     LF              +  N+A   LD   FS         L+  LSG  
Sbjct: 310 ----------LF------------VALCNNEAFRKLD---FS--------ALKLTLSGGM 336

Query: 301 PLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFN-----MIGTVGVPMTTVEAR 355
            L +   E  +  +G  + +GYG+TE      TS     N      +GT+G+P+ +   +
Sbjct: 337 ALQLATAERWKEVTGCAICEGYGMTE------TSPVVSVNPSQAIQVGTIGIPVPSTLCK 390

Query: 356 LESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQP 412
           +  + + G + L     GE+C++G  +  GY++RP+ T+E++  DGW  TGDI   Q 
Sbjct: 391 V--IDDDGNE-LPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQE 445

Length = 562

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score = 83.1 bits (206), Expect = 3e-17
 Identities = 86/423 (20%), Positives = 138/423 (32%), Gaps = 96/423 (22%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           +R  G+   +R  +   + PE+  A           VP+   L  +   + +N +   + 
Sbjct: 47  LRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLLTPDDYRYYLNDSRARVL 106

Query: 61  FVQE---NKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTL 117
            + E     +   L   P    +L+ ++               L     S+ + +     
Sbjct: 107 VISEELWEVLKPALQKDP----HLRHVIV------VGGAGPGAL-----SYAQLIATAAE 151

Query: 118 DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAI-VAEVLSVDQMFVVTGKVCSEEDTY 176
           + E       +++  +Y+SG+TG PKGVV  +  + V        +  +T     E+D  
Sbjct: 152 ELEAAATSADDMAFWLYSSGSTGRPKGVVHLHHDMLVTAEAYAKNVLGIT-----EDDVV 206

Query: 177 FSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLM----------EDIQELKPTMFSGV 226
           FS   L   Y        +  G       G    LM            I+  KPT+F GV
Sbjct: 207 FSAAKLFFAYG-------LGNGLYFPLSVGATTVLMPERPTPDAVFATIERYKPTVFFGV 259

Query: 227 PRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIRE 286
           P +Y                                    M      P  D    S +R 
Sbjct: 260 PTLY----------------------------------AAMLAAPEKPERD---LSSLR- 281

Query: 287 AFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVG 346
                    +S    LP  +    +   G  +  G G TE      ++        GT G
Sbjct: 282 -------LCVSAGEALPAEIGYRWKELFGLEILDGIGSTEMLHIFLSNRPGAVKY-GTSG 333

Query: 347 VPMTTVEARLESVPEMGYDALSSVPRGEI---CLRGNTLFSGYYKRPDLTEEVIVDGWFH 403
            P+   E +L  V E G      V  GEI    +RG++  +GY+ R + T E  V  W  
Sbjct: 334 KPVPGYEVKL--VDEDG----EEVADGEIGELWVRGDSSAAGYWNRREKTRETFVGEWTR 387

Query: 404 TGD 406
           TGD
Sbjct: 388 TGD 390

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 83.4 bits (207), Expect = 3e-17
 Identities = 109/450 (24%), Positives = 164/450 (36%), Gaps = 147/450 (32%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           + + GV PGDR  +     PE +    A       ++PL        +++ I  AE    
Sbjct: 45  LVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVFLPLNTAYTLAELDYFIGDAE---- 100

Query: 61  FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDC- 119
                  P+++ C P           FA +S    K A   G           + TLD  
Sbjct: 101 -------PALVVCDPAN---------FAWLS----KIAAAAGAP--------HVETLDAD 132

Query: 120 ----------------ELPPKKKTNISTIMYTSGTTGEPKGVVLT--NQAIVAEVLSVDQ 161
                           E  P+   +++ I+YTSGTTG  KG +L+  N    A  L    
Sbjct: 133 GTGSLLEAAAAAPDDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYW 192

Query: 162 MFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCI-HKGCSIGFWRGDVRYLMEDIQELKP 220
            F       + +D     LP+ H +   + T+     G S+  +    ++  + +  L P
Sbjct: 193 RF-------TPDDVLIHALPIFHTHGLFVATNVALLAGASM-IFLP--KFDPDAVLALMP 242

Query: 221 --TMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDS 278
             T+  GVP  Y R                                          LL  
Sbjct: 243 RATVMMGVPTFYTR------------------------------------------LLQE 260

Query: 279 LVFSKIREAFGG-RLQAMLSGAAPLPI--HVEEFLRVTSGAPLTQGYGLTESCSGCFTSL 335
              +  REA    RL   +SG+APL    H E   R  +G  + + YG+TE+        
Sbjct: 261 PRLT--REAAAHMRL--FISGSAPLLAETHREFQER--TGHAILERYGMTET-------- 306

Query: 336 ADVFNMI-----------GTVGVPMTTVEARLESVPEMGYDALSSVPRGEIC---LRGNT 381
               NM            GTVG P+  V  R+   PE G    + +P GEI    ++G  
Sbjct: 307 ----NMNTSNPYDGERRAGTVGFPLPGVSLRVTD-PETG----AELPPGEIGMIEVKGPN 357

Query: 382 LFSGYYKRPDLT-EEVIVDGWFHTGDIGEW 410
           +F GY++ P+ T EE   DG+F TGD+G+ 
Sbjct: 358 VFKGYWRMPEKTAEEFRADGFFITGDLGKI 387

Length = 504

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 83.5 bits (207), Expect = 3e-17
 Identities = 102/431 (23%), Positives = 173/431 (40%), Gaps = 90/431 (20%)

Query: 5   GVNPGDRCGIYGSNCPEWIIAMEAC-NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQ 63
           GV  GDR  +Y  N P+++IA  A   + A+  VP+        +   +  +   +A V 
Sbjct: 57  GVRKGDRVLLYMQNSPQFVIAYYAILRANAVV-VPVNPMNREEELAHYVTDSGARVAIVG 115

Query: 64  ENKIPSILSCLPRCCLYLKTIVSFAN---------VSSSQKKEAEELGVSCF---SWEEF 111
               P +   +    L    +  +++         V +  + E     ++     +W+E 
Sbjct: 116 SELAPKVAPAVGNLRLRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQALAPGGVVAWKE- 174

Query: 112 LQLGTLDCELPPKKKT----NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTG 167
                L   L P   T    +++ + YTSGTTG PKG + T++ ++A  +        T 
Sbjct: 175 ----ALAAGLAPPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTP 230

Query: 168 KVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVP 227
                E    + LPL H+   +   H ++    I  + G    LM              P
Sbjct: 231 -----ESVVLAVLPLFHVTGMV---HSMNA--PI--YAGATVVLM--------------P 264

Query: 228 RVYDRIYTG--IS-NKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKI 284
           R +DR      I   +++    +   + +F     L +           P L     S +
Sbjct: 265 R-WDREAAARLIERYRVTHWTNIPTMVVDF-----LAS-----------PGLAERDLSSL 307

Query: 285 REAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGT 344
           R   GG       GAA +P  V E L+  +G    +GYGLTE+ +   ++  D   +   
Sbjct: 308 RYIGGG-------GAA-MPEAVAERLKELTGLDYVEGYGLTETMAQTHSNPPDRPKL-QC 358

Query: 345 VGVPMTTVEARLESVPEMGYDALSSVPR---GEICLRGNTLFSGYYKRPDLTEEVIV--D 399
           +G+P   V+AR+     +  + L  +P    GEI + G  +F GY+ RP+ T E  +  D
Sbjct: 359 LGIPTFGVDARV-----IDPETLEELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEID 413

Query: 400 G--WFHTGDIG 408
           G  +F TGD+G
Sbjct: 414 GKRFFRTGDLG 424

Length = 546

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 80.8 bits (200), Expect = 1e-16
 Identities = 68/296 (22%), Positives = 101/296 (34%), Gaps = 84/296 (28%)

Query: 129 ISTIMYTSGTTGEPKGVV-------LTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLP 181
           I+  +YTSGTTG+PKGV+          +A   E+L +              D  FS   
Sbjct: 93  IAYWLYTSGTTGKPKGVMHRHRDPLTFAEAFARELLGL-----------QPGDRIFSSSK 141

Query: 182 LAHIYDQIIETHCIHKGCSIGFW------RGDVRYLMEDIQELKPTMFSGVPRVYDRIYT 235
           L   Y      + +      G              +++ +   +PT+  GVP +Y     
Sbjct: 142 LFFAYGLG---NSLLFPLFSGASAVLLPGWPTPEAVLDLLARHRPTVLFGVPALY----- 193

Query: 236 GISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAM 295
                +   GA S  LF                               +R          
Sbjct: 194 ---RALLESGAGSAPLF-----------------------------RSVRLCV------- 214

Query: 296 LSGAAPLPIHVEEFLRVTSGAPLTQGYGLTES----CSGCFTSLADVFNMIGTVGVPMTT 351
            S    LP  + E     +G  +  G G TE      S    +        GT G P+  
Sbjct: 215 -SAGEALPAGLAERWAEATGIEILDGIGSTEVLHIFISNRPGAAR-----PGTTGRPVPG 268

Query: 352 VEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDI 407
            EARL  V E G +  +    G++ +RG +L  GY+  P+ T+  + DGW  TGD 
Sbjct: 269 YEARL--VDESGREVPAGTV-GDLWVRGPSLAPGYWNLPEKTQRTLRDGWLRTGDR 321

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 79.6 bits (197), Expect = 2e-16
 Identities = 66/295 (22%), Positives = 112/295 (37%), Gaps = 72/295 (24%)

Query: 128 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY- 186
           +++ I+YTSG+TGEPKGV+L+++ + A   S+ Q   +T     E+D   + LP +  Y 
Sbjct: 3   DLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLELT-----EDDRILAVLPFSFDYG 57

Query: 187 -DQIIETHCIHKGCSIGFWRGDVRYLM-----EDIQELKPTMFSGVPRVYDRIYTGISNK 240
             Q++ T     G  +     + R+       + + + + T F+GVP  +          
Sbjct: 58  LSQLL-TAFRVGGTLV----LESRFAFPRDVLKHLAKERITGFAGVPTTW---------- 102

Query: 241 ISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAA 300
                                              L  L     RE F   L+ + +   
Sbjct: 103 ---------------------------------AQLLRLD-PLAREDF-PSLRYLTNAGG 127

Query: 301 PLP-IHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESV 359
            LP   + +  R    A L   YGLTE+    +    ++     ++G  +  VE  L  V
Sbjct: 128 ALPAKTILQLRRAFPDAKLFSMYGLTEAFRSTYLPPEELDRRPDSIGKAIPNVE--LWVV 185

Query: 360 PEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV------DGWFHTGDIG 408
            E G         GE+  RG  +  GY+  P+ T E +       +   +TGD+ 
Sbjct: 186 DEDGNRCAPGEV-GELVHRGANVMKGYWNDPEATAERLRPGPLPGEIVLYTGDLV 239

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score = 80.5 bits (199), Expect = 2e-16
 Identities = 80/301 (26%), Positives = 131/301 (43%), Gaps = 75/301 (24%)

Query: 122 PPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD----------QMFVVTGKVCS 171
           P     +++ + YT GTTG  KG +LT++ ++A +              +  VVT     
Sbjct: 201 PELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVTA---- 256

Query: 172 EEDTYFSFLPLAHIYDQIIETHC---IHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPR 228
                   LPL HI+   +  +C   I  G        + R +   ++ELK   F+ +  
Sbjct: 257 --------LPLYHIF--ALTVNCLLFIELG-GQNLLITNPRDIPGFVKELKKYPFTAI-- 303

Query: 229 VYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAF 288
                 TG++            LF    N +    ++          LD   FS ++ + 
Sbjct: 304 ------TGVNT-----------LFNALLNNE--EFQE----------LD---FSSLKLSV 331

Query: 289 GGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLA-DVFNMIGTVGV 347
           GG       G A      E ++++T G  L +GYGLTE CS   +    D+    G++G+
Sbjct: 332 GG-------GMAVQQAVAERWVKLT-GQYLLEGYGLTE-CSPLVSVNPYDLDYYSGSIGL 382

Query: 348 PMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDI 407
           P+ + E +L  V + G +     P GE+ ++G  +  GY++RP+ T+EVI DGW  TGDI
Sbjct: 383 PVPSTEIKL--VDDDGNEVPPGEP-GELWVKGPQVMLGYWQRPEATDEVIKDGWLATGDI 439

Query: 408 G 408
            
Sbjct: 440 A 440

Length = 560

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 78.7 bits (194), Expect = 9e-16
 Identities = 75/304 (24%), Positives = 126/304 (41%), Gaps = 71/304 (23%)

Query: 119 CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV----VTGKVCSEED 174
              P  K+ +++ IMY+SGTTG  KGVVLT++ ++A V    ++FV       +    ++
Sbjct: 190 VPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMV----ELFVRFEASQYEYPGSDN 245

Query: 175 TYFSFLPLAHIYD-QIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDR 232
            Y + LP+ HIY   +     +  G +I   R  D   +++ I   K T F  VP     
Sbjct: 246 VYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVP----- 300

Query: 233 IYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRL 292
                                                    P+L +L   K +   G  L
Sbjct: 301 -----------------------------------------PILMALT-KKAKGVCGEVL 318

Query: 293 QAML---SGAAPLPIH-VEEFLRVTSGAPLTQGYGLTESCS-GCFTSLADVFNMIGTVGV 347
           +++     GAAPL    +++F++        QGYG+TES + G      +  +   +VG+
Sbjct: 319 KSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGL 378

Query: 348 PMTTVEARLESVPEMGYDALSSVP---RGEICLRGNTLFSGYYKRPDLTEEVIV-DGWFH 403
               ++A++     + +     +P    GE+ ++G  +  GY   P  T+  I  DGW  
Sbjct: 379 LAPNMQAKV-----VDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLR 433

Query: 404 TGDI 407
           TGDI
Sbjct: 434 TGDI 437

Length = 560

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 77.6 bits (192), Expect = 1e-15
 Identities = 35/100 (35%), Positives = 47/100 (47%), Gaps = 14/100 (14%)

Query: 315 GAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVP--- 371
           G  L +GYG+TE+               G+ G P   VE R+  V E G +    VP   
Sbjct: 219 GVKLVEGYGMTETGVPIIAPGDP--APPGSCGRPRPGVEVRI--VDEDGRE----VPPGE 270

Query: 372 RGEICLRGN---TLFSGYYKRPDLTEEVIVDGWFHTGDIG 408
            GE+ +R      +F GYY  P+ T +   +GWFHTGD G
Sbjct: 271 VGELVVRPRRPWAMFKGYYGMPEATAKAWRNGWFHTGDRG 310

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 77.3 bits (191), Expect = 2e-15
 Identities = 43/195 (22%), Positives = 72/195 (36%), Gaps = 35/195 (17%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           +   G+  GDR    G N   + +   AC      +VP+   L    + +I++H+     
Sbjct: 53  LLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAF 112

Query: 61  FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF--------SWEEFL 112
            V     P++                    ++      + L +S           W +F 
Sbjct: 113 LVD----PALAPTAE---------------AALALLPVDTLILSLVLGGREAPGGWLDFA 153

Query: 113 QLGTLDCELPPKKKTNIST---IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKV 169
                     P  +        I+YTSGT   PKG +LT++A++AE +S     +V G +
Sbjct: 154 DWAEAGSVAEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSC----IVAGDM 209

Query: 170 CSEEDTYFSFLPLAH 184
            S +D     LPL H
Sbjct: 210 -SADDIPLHALPLYH 223

Length = 523

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 77.1 bits (191), Expect = 2e-15
 Identities = 65/319 (20%), Positives = 102/319 (31%), Gaps = 107/319 (33%)

Query: 128 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTY-----FSF--- 179
           +++ ++YTSG+TG PKGV++ ++ +V  +  + + + +T       D       FSF   
Sbjct: 94  DLAYVIYTSGSTGRPKGVMVEHRGLVNLLAWLQERYGLT-----AGDRVLQFASFSFDAS 148

Query: 180 -----LPLA-----HIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRV 229
                 PL       +     E               D   L E ++E + T+   VP  
Sbjct: 149 VWEIFPPLLSGATLVLAPP--EVL------------RDPEALAELLREHRITVLHLVP-- 192

Query: 230 YDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFG 289
                                                        LL +L+ +    A  
Sbjct: 193 --------------------------------------------SLLRALLDALEPAALP 208

Query: 290 GRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTE---SCSGCFTSLADVFNMIGTVG 346
                ++ G A     V  +  +  GA L   YG TE     +       D+      +G
Sbjct: 209 SLRLVIVGGEALPAELVRRWRELFPGARLVNAYGPTETTVDVTYHEVDPDDLDGGSVPIG 268

Query: 347 VPMTTVEA-----RLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGW 401
            P+           L  VP         VP GE+ + G  +  GY  RP+LT E  V   
Sbjct: 269 RPIANTRVYVLDEDLRPVPVG-------VP-GELYIGGAGVARGYLNRPELTAERFVPDP 320

Query: 402 FH--------TGDIGEWQP 412
           F         TGD+  W P
Sbjct: 321 FGGPGERLYRTGDLARWLP 339

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score = 77.3 bits (191), Expect = 3e-15
 Identities = 64/303 (21%), Positives = 113/303 (37%), Gaps = 92/303 (30%)

Query: 129 ISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 188
           ++  ++TSG+TG PK V+ T++ + A    + Q +        E      +LP  H +  
Sbjct: 166 VAKYLFTSGSTGLPKAVINTHRMLCANQAMIAQCWPFLT---EEPPVLVDWLPWNHTF-- 220

Query: 189 IIETHCIHKGCSIGF----WRGDVRYL-------------MEDIQELKPTMFSGVPRVYD 231
                    G +  F    + G   Y+             + +++E+ PT++  VP+ ++
Sbjct: 221 ---------GGNHNFNMVLYNGGTLYIDDGKPVPGLFEETLRNLREVSPTVYFNVPKGFE 271

Query: 232 RIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGR 291
                          L   L                 +  AA          +R  F  R
Sbjct: 272 --------------MLVDAL-----------------ERDAA----------LRRRFFKR 290

Query: 292 LQAMLSGAAPLPIHV----EEFLRVTSG--APLTQGYGLTESC-SGCFTSLADVFNMIGT 344
           L+ +    A LP  V    +     T+G   P+T G G TE+  +  F          G 
Sbjct: 291 LRLLFYAGAALPQDVWDRLQALAVRTTGERIPMTSGLGATETAPTATFVHWPTD--RSGV 348

Query: 345 VGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFH 403
           +G+P    E +L  VP  G        + E+ ++G  +  GY++ P+LT E    +G++ 
Sbjct: 349 IGLPAPGTELKL--VPNGG--------KLEVRVKGPNVTPGYWRDPELTAEAFDEEGFYR 398

Query: 404 TGD 406
            GD
Sbjct: 399 IGD 401

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 76.7 bits (189), Expect = 4e-15
 Identities = 53/201 (26%), Positives = 82/201 (40%), Gaps = 10/201 (4%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           +R  G+  G+R  IY     E + AM         +VP+   L A  V  I+    V + 
Sbjct: 42  LRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLKAEQVAHILADCNVRLL 101

Query: 61  FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE 120
                ++  +   LP C      I+    V           G    SW + L LG  D  
Sbjct: 102 VTSSERLDLLHPALPGCHDLRTLII----VGDPAHASEGHPGEEPASWPKLLALGDAD-P 156

Query: 121 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 180
             P   ++++ I+YTSG+TG PKGVVL+++ +VA   SV             +D   + L
Sbjct: 157 PHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENR-----PDDRLLAVL 211

Query: 181 PLAHIYDQIIETHCIHKGCSI 201
           PL+  Y     T   + G ++
Sbjct: 212 PLSFDYGFNQLTTAFYVGATV 232

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 76.1 bits (188), Expect = 6e-15
 Identities = 47/143 (32%), Positives = 59/143 (41%), Gaps = 21/143 (14%)

Query: 285 REAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTES---CSGCFT-------S 334
           R      + AM++GAAP P  V   +    G  LT  YGLTE+    + C          
Sbjct: 292 RAGIDHPVHAMVAGAAP-PAAVIAKME-EIGFDLTHVYGLTETYGPATVCAWQPEWDALP 349

Query: 335 LADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPR-----GEICLRGNTLFSGYYKR 389
           L +   +    GV     E     V  +  D +  VP      GEI  RGN +  GY K 
Sbjct: 350 LDERAQLKARQGVRYPLQEG----VTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKN 405

Query: 390 PDLTEEVIVDGWFHTGDIGEWQP 412
           P  TEE    GWFHTGD+    P
Sbjct: 406 PKATEEAFAGGWFHTGDLAVLHP 428

Length = 545

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 75.6 bits (186), Expect = 9e-15
 Identities = 77/286 (26%), Positives = 120/286 (41%), Gaps = 51/286 (17%)

Query: 128 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTG----KVCSE-EDTYFSFLPL 182
           +I+ + YT GTTG  KG +LT+  +VA +L V       G     +  E ++   + LPL
Sbjct: 208 DIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQEVMIAPLPL 267

Query: 183 AHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKIS 242
            HIY       C+                          M SG   V       I+N   
Sbjct: 268 YHIYAFTANCMCM--------------------------MVSGNHNVL------ITNPRD 295

Query: 243 SGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPL 302
             G + K+L ++ ++  LG +          P    L FS         L+   SG   L
Sbjct: 296 IPGFI-KELGKWRFSALLG-LNTLFVALMDHPGFKDLDFS--------ALKLTNSGGTAL 345

Query: 303 PIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEM 362
                E     +G  + +GYGLTE+     T+       +GTVG+P+      L+ + + 
Sbjct: 346 VKATAERWEQLTGCTIVEGYGLTETSPVASTNPYGELARLGTVGIPV--PGTALKVIDDD 403

Query: 363 GYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDI 407
           G + L    RGE+C++G  +  GY+++P+ T E +  +GWF TGDI
Sbjct: 404 G-NELPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWFKTGDI 448

Length = 562

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score = 73.4 bits (181), Expect = 4e-14
 Identities = 61/304 (20%), Positives = 97/304 (31%), Gaps = 88/304 (28%)

Query: 129 ISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVV--TGKVC--SEEDTYFSFLPLAH 184
           ++    + GTTG PK +  T+          D ++    + + C       Y + LP AH
Sbjct: 141 VALFQLSGGTTGLPKLIPRTH---------NDYLYSARASAEACGLDPGTVYLAVLPAAH 191

Query: 185 IYDQIIETHCIHKGCSIG-FWRG---------DVRYLMEDIQELKPTMFSGVPRVYDRIY 234
            +        +     +G    G                 I+  K T  + VP + +   
Sbjct: 192 NF-------TLSSPGLLGALLAGGTVVLHHPPSPDVAFPLIEREKVTHTALVPALLNLWL 244

Query: 235 TGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQA 294
                                                 A   D    S         L+ 
Sbjct: 245 -------------------------------------EAAEWDQADLS--------SLRV 259

Query: 295 MLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMI-GTVGVPMTT-V 352
           +  G APL   +   +    G PL Q +G+ E     +T L D  ++I  T G P++   
Sbjct: 260 IQVGGAPLSPELARRVEERLGCPLQQVFGMAEG-LVNYTRLDDPPDVIMRTQGRPISPAD 318

Query: 353 EARLESVPEMGYDALSSVPRGEI---CLRGNTLFSGYYKRPDLTEEVIV-DGWFHTGDIG 408
           E R+  V + G      VP GE+     RG     GYY+ P+        DG++ TGD+ 
Sbjct: 319 EIRI--VDDQGEP----VPPGEVGELLTRGPYTIRGYYRAPEHNARAFTDDGFYRTGDLV 372

Query: 409 EWQP 412
               
Sbjct: 373 RIDA 376

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score = 71.0 bits (175), Expect = 2e-13
 Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 3/67 (4%)

Query: 1  MRSRGVNPGDRCGIYGSNCPEWIIAMEACNS-QAITYVPLYDTLGANAVEFIINHAEVSI 59
          + + GV PGDR  I   N PEW+IA  A  +  A+  VP+Y T     V +I+N +   +
Sbjct: 22 LIALGVKPGDRVAILAENRPEWVIADLAILAAGAVP-VPIYPTSSPEEVAYILNDSGARV 80

Query: 60 AFVQENK 66
           FV E+K
Sbjct: 81 VFV-EDK 86

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 71.5 bits (175), Expect = 2e-13
 Identities = 37/107 (34%), Positives = 52/107 (48%), Gaps = 10/107 (9%)

Query: 306 VEEFLRVTSGAPLTQGYGLTESCSG-CFTSLADVFNMIGTVGVPMTTVEARLESVPEMGY 364
           + +F RV + A     YGLTE+CSG            IG+ G  +  VE R+        
Sbjct: 281 IRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIAD------ 334

Query: 365 DALSSVP---RGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIG 408
            A   +P   +GEIC+RG  +  GY+K P+ T E     WF +GD+G
Sbjct: 335 GAGRWLPPNMKGEICMRGPKVTKGYWKDPEKTAEAFYGDWFRSGDVG 381

Length = 497

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 69.9 bits (171), Expect = 7e-13
 Identities = 92/405 (22%), Positives = 144/405 (35%), Gaps = 101/405 (24%)

Query: 43  LGANAVEFIINHAEVSIAFVQENKIP------SILSCLPRCCLYLKTIVSFANVSSSQKK 96
           L A  + F++ H++  +  V +           IL+   +       ++   + +   K 
Sbjct: 104 LNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKS 163

Query: 97  EAEELGVSCFSWEEFLQLGTLDCEL---PPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV 153
               LG     +E+FL+ G  D E    PP  +     + YTSGTT  PKGVVL ++   
Sbjct: 164 LQYALGKGAIEYEKFLETG--DPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAY 221

Query: 154 AEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI----YDQIIETHCIHKGCSIGFWRGDVR 209
              LS   ++ +     +E   Y   LP+ H     +   +   C   G +I   +   +
Sbjct: 222 LMALSNALIWGM-----NEGAVYLWTLPMFHCNGWCFTWTLAALC---GTNICLRQVTAK 273

Query: 210 YLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQ 269
            +   I     T F   P V + I                                  P+
Sbjct: 274 AIYSAIANYGVTHFCAAPVVLNTIVNA-------------------------------PK 302

Query: 270 NKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV----EEFLRVTSGAPLTQGYGLT 325
           ++    L  +V              M +GAAP P  +    E+  RVT    L++ YG +
Sbjct: 303 SETILPLPRVV------------HVMTAGAAPPPSVLFAMSEKGFRVTHTYGLSETYGPS 350

Query: 326 ESCSGC--FTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSS-----------VPR 372
             C+    + SL                 +ARL +   + Y  L             VP 
Sbjct: 351 TVCAWKPEWDSLPPE-------------EQARLNARQGVRYIGLEGLDVVDTKTMKPVPA 397

Query: 373 -----GEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQP 412
                GEI +RGN +  GY K P   EE   +GWFH+GD+G   P
Sbjct: 398 DGKTMGEIVMRGNMVMKGYLKNPKANEEAFANGWFHSGDLGVKHP 442

Length = 567

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score = 69.6 bits (170), Expect = 8e-13
 Identities = 84/324 (25%), Positives = 137/324 (42%), Gaps = 65/324 (20%)

Query: 99  EELGVSCFSWEEFLQLG-----TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV 153
           EE      +W+E L+       T D E     +T++  + ++SGTTG  KGV+LT++ +V
Sbjct: 153 EEKIEGAVNWKELLEAADRAGDTSDNEE--ILQTDLCALPFSSGTTGISKGVMLTHRNLV 210

Query: 154 AEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCI---HKGCSIGFWRGDVRY 210
           A + S   +F V  ++  +  T    +P  HIY  I    C    +KG  +   R ++R 
Sbjct: 211 ANLCS--SLFSVGPEMIGQVVT-LGLIPFFHIYG-ITGICCATLRNKGKVVVMSRFELRT 266

Query: 211 LMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQN 270
            +  +   + +    VP +   I   + N                               
Sbjct: 267 FLNALITQEVSFAPIVPPI---ILNLVKN------------------------------- 292

Query: 271 KAAPLLDSLVFSKIREAFGGRLQAMLSGAAPL-PIHVEEFLRVTSGAPLTQGYGLTE-SC 328
              P+++    SK++      LQA+++ AAPL P  +  F     G  + + YGLTE SC
Sbjct: 293 ---PIVEEFDLSKLK------LQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSC 343

Query: 329 SGCFTSLADVFNMIG---TVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSG 385
                   +  + I    +VG  +  +E +    P+ G     + P GE+C+R   +  G
Sbjct: 344 ITLTHGDPEKGHGIAKKNSVGFILPNLEVKFID-PDTGRSLPKNTP-GELCVRSQCVMQG 401

Query: 386 YYKRPDLTEEVI-VDGWFHTGDIG 408
           YY   + T+  I  DGW HTGDIG
Sbjct: 402 YYNNKEETDRTIDEDGWLHTGDIG 425

Length = 546

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 69.3 bits (170), Expect = 9e-13
 Identities = 35/105 (33%), Positives = 49/105 (46%), Gaps = 18/105 (17%)

Query: 315 GAPLTQGYGLTESCSGCFTSLADVFN--------MIGTVGVPMTTVEARLESVPEMGYDA 366
           G  L Q +GL E  +G  T L    +         IGT G   T +E +++       D 
Sbjct: 305 GKVLVQYFGLGE-VTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQD------DE 357

Query: 367 LSSVP---RGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIG 408
              +P    GEIC+ G  +F+GYY  P+   +   DGWF TGD+G
Sbjct: 358 GRELPPGETGEICVIGPAVFAGYYNNPEANAKAFRDGWFRTGDLG 402

Length = 528

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score = 68.4 bits (168), Expect = 1e-12
 Identities = 38/181 (20%), Positives = 69/181 (38%), Gaps = 28/181 (15%)

Query: 4   RGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQ 63
            GV PGDR  +      E ++A+ A       YVPL     A  + FI+  A   +    
Sbjct: 20  GGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTD 79

Query: 64  ENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPP 123
              + S L+ L    + L  +   A   +      +                        
Sbjct: 80  S-ALASRLAGLVLPVILLDPLELAALDDAPAPPPPDAPSGP------------------- 119

Query: 124 KKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA 183
               +++ ++YTSG+TG PKGVV+T++++V  +  + + + +       +D    F  L+
Sbjct: 120 ---DDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARRYGL-----DPDDRVLQFASLS 171

Query: 184 H 184
            
Sbjct: 172 F 172

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 68.8 bits (169), Expect = 1e-12
 Identities = 53/197 (26%), Positives = 80/197 (40%), Gaps = 35/197 (17%)

Query: 2   RSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAV------------- 48
            S GV PGDR      N    +    A        VP     G  AV             
Sbjct: 43  ESLGVKPGDRVATLAWNTHRHLELYFA--------VP-----GMGAVLHTLNPRLSPEQI 89

Query: 49  EFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 108
            +IINHAE  + FV ++ +P + +  PR      T+ +      +   E     V  +  
Sbjct: 90  AYIINHAEDKVIFVDDDFLPLLEAIAPRL----PTVKAVVVYDDADMPETSLPNVYAY-- 143

Query: 109 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGK 168
           EE L+  + + E P   +   + + YTSGTTG PKGVV +++++V   L+          
Sbjct: 144 EELLEEESPEYEWPELDENTAAGLCYTSGTTGNPKGVVYSHRSLVLHTLASAL---PDSL 200

Query: 169 VCSEEDTYFSFLPLAHI 185
             SE DT    +P+ H+
Sbjct: 201 GLSESDTVLPVVPMFHV 217

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score = 68.8 bits (169), Expect = 2e-12
 Identities = 33/133 (24%), Positives = 57/133 (42%), Gaps = 18/133 (13%)

Query: 285 REAFGGRLQAMLSGAAPLPIHV----EEFLRVTSGA--PLTQGYGLTESCSGCFTSLADV 338
           R  F  RL+ +    A L   V    +     T G    +  G G+TE+ +   T     
Sbjct: 329 RRRFFSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGMTET-APSATFTTGP 387

Query: 339 FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV 398
            +  G +G+P    E +L  VP  G        + E+ ++G  +  GY++ P+LT E   
Sbjct: 388 LSRAGNIGLPAPGCEVKL--VPVGG--------KLEVRVKGPNVTPGYWRAPELTAEAFD 437

Query: 399 D-GWFHTGDIGEW 410
           + G++ +GD   +
Sbjct: 438 EEGYYRSGDAVRF 450

Length = 614

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 66.1 bits (162), Expect = 1e-11
 Identities = 78/315 (24%), Positives = 128/315 (40%), Gaps = 80/315 (25%)

Query: 129 ISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 188
           I+ I ++SG+TGEPKGV+LT++ ++  + +     ++     + ED + S++PL H    
Sbjct: 108 IAFIQFSSGSTGEPKGVILTHKNLLTNIEA-----IIEAAEITSEDVFLSWMPLTHDMGL 162

Query: 189 IIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVY-DRIYTGISNKISSGGAL 247
           I      H   +     G  +YLM         +F   P ++ D+     +  +SS    
Sbjct: 163 I----GFHLTPTA---LGINQYLM------PTRLFIRRPLLWLDKASQHRATILSSP--- 206

Query: 248 SKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV- 306
                 F Y Y L + K     +      D    S +R  F        +GA P+   + 
Sbjct: 207 -----NFGYKYLLKHFKTEKIID-----WD---LSSVRLIF--------NGAEPISADLC 245

Query: 307 EEF--------LRVTSGAPLTQGYGLTESCSG-CFTSLADVFNMI----GTVGVPMTTVE 353
           EEF        LR  +   +   YGL E+     F    + F  +      + V +  +E
Sbjct: 246 EEFLEKMAPFGLRPNA---MYPVYGLAEATLAVSFPKPGEPFKTVCLDRNHLKVGVKIIE 302

Query: 354 ARLE-----SVPEMGY-----------DALSSVPR---GEICLRGNTLFSGYYKRPDLTE 394
              +     S  E+G            DA   +P    G I ++G+ + SGYY  P+ T+
Sbjct: 303 IDPKNSDAISFVEVGSPIDGCEIRIVDDAGEVLPDRTIGHIQIKGDNVTSGYYNNPEATK 362

Query: 395 EVIV-DGWFHTGDIG 408
           + I  DGW  TGD+G
Sbjct: 363 KSITPDGWLKTGDLG 377

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 65.3 bits (160), Expect = 2e-11
 Identities = 38/121 (31%), Positives = 50/121 (41%), Gaps = 21/121 (17%)

Query: 298 GAAPLPIHV-EEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFN------MIGTVGVPMT 350
           GA+ +P+ V +E      G      YG TE        LA V          G+ G P+ 
Sbjct: 294 GASIMPVEVLKELRERLPGLRFYNCYGQTE-----IAPLATVLGPEEHLRRPGSAGRPVL 348

Query: 351 TVEARLESVPEMGYDALSSVPR---GEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDI 407
            VE R+        D  + V     GEI  R   L  GY+  P+ T E    GWFH+GD+
Sbjct: 349 NVETRVVD------DDGNDVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAFRGGWFHSGDL 402

Query: 408 G 408
           G
Sbjct: 403 G 403

Length = 523

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 65.4 bits (160), Expect = 2e-11
 Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 31/133 (23%)

Query: 306 VEEFLRVTS--GAP---LTQGYGLTESCSGCF----------TSLADVFNMIGTVGVPMT 350
           +  FL + +  G P   +   +G++E+CSG            T    V ++ G +     
Sbjct: 306 IRRFLELLAPYGLPADAIRPAFGMSETCSGVTYSRGFRTGPDTGGVLVDSLTGPLRFAAA 365

Query: 351 TVEARLESVPEMGY-----------DALSSVPRGEIC---LRGNTLFSGYYKRPDLTEEV 396
                +  V E+G            +  + +P GE+    +RG T+ SGYY+ P+   E 
Sbjct: 366 DHPEAVTFV-ELGRPIPGVAIRIVDEDGALLPEGEVGRLQVRGPTVTSGYYRNPEANAEA 424

Query: 397 IV-DGWFHTGDIG 408
              DGWF TGD+G
Sbjct: 425 FTEDGWFRTGDLG 437

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 64.6 bits (158), Expect = 3e-11
 Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 18/126 (14%)

Query: 292 LQAMLSGAAPL-PIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM------IGT 344
           L+ +  GA+P+ P+ + E +    G    Q YG TE      T L    +       + +
Sbjct: 283 LETVYYGASPMSPVRLAEAIERF-GPIFAQYYGQTE-APMVITYLRKRDHDPDDPKRLTS 340

Query: 345 VGVPMTTVEARLESVPEMGYDALSSVPR---GEICLRGNTLFSGYYKRPDLTEEVIVDGW 401
            G P   +   L        +    V +   GEIC+RG  +  GY+ RP+ T E   DGW
Sbjct: 341 CGRPTPGLRVALLD------EDGREVAQGEVGEICVRGPLVMDGYWNRPEETAEAFRDGW 394

Query: 402 FHTGDI 407
            HTGD+
Sbjct: 395 LHTGDV 400

Length = 524

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 64.7 bits (158), Expect = 4e-11
 Identities = 19/36 (52%), Positives = 25/36 (69%)

Query: 373 GEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIG 408
           GEI +R  +L  GY+ +P+ T E + DGW HTGDIG
Sbjct: 415 GEIVVRTPSLLKGYWNKPEATAEALRDGWLHTGDIG 450

Length = 567

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 63.6 bits (155), Expect = 6e-11
 Identities = 47/186 (25%), Positives = 79/186 (42%), Gaps = 14/186 (7%)

Query: 5   GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE 64
           G+    R G    NC E +  + A       + PL   L  + +  IINHAE  +     
Sbjct: 60  GITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADP 119

Query: 65  NKIPSILSCLPRC-CLYLKTIVSFANVSSSQKKEAEEL-GVSCFSWEEFLQLGTLDCELP 122
                +   L  C C+     V F   S +    A    G+  +S+E  L   +   + P
Sbjct: 120 RLAEQLGEILKECPCV---RAVVFIGPSDADSAAAHMPEGIKVYSYEALLDGRSTVYDWP 176

Query: 123 PKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS---VDQMFVVTGKVCSEEDTYFSF 179
              +T  + I Y++GTTG PKGVV +++++  + LS    D + V  G+      ++   
Sbjct: 177 ELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGE------SFLCC 230

Query: 180 LPLAHI 185
           +P+ H+
Sbjct: 231 VPIYHV 236

Length = 576

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 63.0 bits (154), Expect = 9e-11
 Identities = 34/136 (25%), Positives = 53/136 (38%), Gaps = 35/136 (25%)

Query: 298 GAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTV----- 352
           G+A     +E+      G  +   +G+TE+              +GTV      +     
Sbjct: 288 GSALPRSLIEKLEE--RGVEVIHAWGMTETSP------------LGTVSRLKPHLVDLPE 333

Query: 353 EARLESVPEMGY-----------DALSSVPR-----GEICLRGNTLFSGYYKRPDLTEEV 396
           E +LE   + G            D  + +P      GE+ +RG  +   YYK P+ TEE+
Sbjct: 334 EEKLELRAKQGRPVPGVELRIVDDEGNELPWDGKTVGELVVRGPWVTGSYYKDPEKTEEL 393

Query: 397 IVDGWFHTGDIGEWQP 412
             DGWF TGD+     
Sbjct: 394 TRDGWFRTGDVAVIDE 409

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional

 Score = 63.1 bits (154), Expect = 1e-10
 Identities = 63/304 (20%), Positives = 112/304 (36%), Gaps = 95/304 (31%)

Query: 132 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIE 191
            ++TSG+TG PK V+ T Q ++   +++ Q  +   +          ++P  H       
Sbjct: 225 YLFTSGSTGMPKAVINT-QRMMCANIAM-QEQLRPREPDPPPPVSLDWMPWNHTM----- 277

Query: 192 THCIHKGCSIGF----WRGDVRYL-------------MEDIQELKPTMFSGVPRVYDRIY 234
                 G +  F    W G   Y+             + +++E+ PT++  VP  Y    
Sbjct: 278 ------GGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGY---- 327

Query: 235 TGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQA 294
                       L++                 M ++ A           +R +F   L+ 
Sbjct: 328 ----------AMLAE----------------AMEKDDA-----------LRRSFFKNLRL 350

Query: 295 MLSGAAPLPIHVEEFLRV----TSGA--PLTQGYGLTESCSGCFTSLADVFNMIGTVGVP 348
           M  G A L   + E ++     T+G   P   GYG TE+ +   T        +G +G+P
Sbjct: 351 MAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYGATET-APTTTGTHWDTERVGLIGLP 409

Query: 349 MTTVEARLESVPEMGYDALSSVPRG---EICLRGNTLFSGYYKRPDLTEEVI-VDGWFHT 404
           +  VE +L              P G   E+ ++G  +  GY+K P+LT      +G++  
Sbjct: 410 LPGVELKL-------------APVGDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRL 456

Query: 405 GDIG 408
           GD  
Sbjct: 457 GDAA 460

Length = 624

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 62.9 bits (154), Expect = 1e-10
 Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 13/97 (13%)

Query: 319 TQGYGLTESCSGCFTSLAD--VFNMIGTVGVPMTTVEARLESV-PEMGYDALSSVPR--- 372
           T  YG+TE+      +  D  +   + TVG  +  +E ++  V PE G     +VPR   
Sbjct: 345 TIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKI--VDPETG----ETVPRGEQ 398

Query: 373 GEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIG 408
           GE+C RG ++  GY+  P+ T E I  DGW HTGD+ 
Sbjct: 399 GELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLA 435

Length = 559

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 62.2 bits (152), Expect = 2e-10
 Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 32/158 (20%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEAC-NSQAIT------YVP-----LYDTLGANAV 48
           + ++G+ PGD  GIY  N  E++ AM     ++A+       YV      L D   A A+
Sbjct: 45  LIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNVNYRYVEDELRYLLDDSDAVAL 104

Query: 49  EFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 108
              +   E +       ++  +L  LP+    L+T+V   + S        +L      +
Sbjct: 105 ---VYEREFA------PRVAEVLPRLPK----LRTLVVVEDGS------GNDLLPGAVDY 145

Query: 109 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVV 146
           E+ L  G+ + +   +   ++  ++YT GTTG PKGV+
Sbjct: 146 EDALAAGSPERDFGERSPDDL-YLLYTGGTTGMPKGVM 182

Length = 533

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 62.2 bits (151), Expect = 2e-10
 Identities = 41/147 (27%), Positives = 64/147 (43%), Gaps = 13/147 (8%)

Query: 272 AAPLLDSLVFSKIREAFGGRLQAML----SGAAPLPIHVEEFLRVTSGAPLTQGYGLTES 327
           A P +  ++  +      GR  A L    S +APL     + L+    AP+   +G+TE+
Sbjct: 273 AVPTIHQILLERAATEPSGRKPAALRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEA 332

Query: 328 CSGCFTSLADVF----NMIGTVGVPMTTVEARLESVPEMGYDALSSVPR--GEICLRGNT 381
                T+  +      N + + G+   +  A++  V   G D L       GE+ LRG T
Sbjct: 333 THQVTTTQIEGIGQTENPVVSTGLVGRSTGAQIRIV---GSDGLPLPAGAVGEVWLRGTT 389

Query: 382 LFSGYYKRPDLTEEVIVDGWFHTGDIG 408
           +  GY   P +T     DGW  TGD+G
Sbjct: 390 VVRGYLGDPTITAANFTDGWLRTGDLG 416

Length = 534

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score = 61.1 bits (149), Expect = 3e-10
 Identities = 35/140 (25%), Positives = 53/140 (37%), Gaps = 25/140 (17%)

Query: 291 RLQAMLSGAAPLPI-HVEEFLRVTSGAPLTQGYGLTESCSGC-FTSL----ADVFNMIGT 344
            L+ ++ G   L    V+ +     GA L   YG TE+      T +    A   + +  
Sbjct: 236 SLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDPDDAPRESPV-P 294

Query: 345 VGVPMTTVEARLESVPEMGYDALSSVPR---GEICLRGNTLFSGYYKRPDLTEEVIVDGW 401
           +G P+      +        D L  VP    GE+ + G  +  GY  RP+LT E  V   
Sbjct: 295 IGRPLANTRLYVLD------DDLRPVPVGVVGELYIGGPGVARGYLNRPELTAERFVPDP 348

Query: 402 F---------HTGDIGEWQP 412
           F          TGD+  + P
Sbjct: 349 FAGGDGARLYRTGDLVRYLP 368

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score = 61.3 bits (149), Expect = 3e-10
 Identities = 41/125 (32%), Positives = 58/125 (46%), Gaps = 17/125 (13%)

Query: 291 RLQAMLSGAAPLPIHVEEFLRVTS----GAPLTQGYGLTE-SCSGCFTSLADVFNMIGTV 345
            L+ +  GAAP     +  LR  +     A +   +G TE S   C     D    +G+V
Sbjct: 291 ALRVLSWGAAPAS---DTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIRKLGSV 347

Query: 346 GVPMTTVEARLESVPEMGYDALSSVPRG---EICLRGNTLFSGYYKRPDLTEEVIVDGWF 402
           G  + TV AR+        + ++ VP G   EI  R  TL SGY+  P+ T E    GWF
Sbjct: 348 GKVIPTVAARVVD------ENMNDVPVGEVGEIVYRAPTLMSGYWNNPEATAEAFAGGWF 401

Query: 403 HTGDI 407
           H+GD+
Sbjct: 402 HSGDL 406

Length = 542

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 60.8 bits (148), Expect = 5e-10
 Identities = 40/122 (32%), Positives = 56/122 (45%), Gaps = 11/122 (9%)

Query: 291 RLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFN-MIGTVGVPM 349
            L+  L   AP+P  + E  R   GA +   +G+TE+ +   T L D       T G P+
Sbjct: 313 SLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPL 372

Query: 350 TTVEARLESVPEMGYDALSSVPRGEI---CLRGNTLFSGYYKRPDLTEEVIVDGWFHTGD 406
             VE R+           + +P G+I    +RG + F GY KRP L      DGWF TGD
Sbjct: 373 PGVEVRVVD------ADGAPLPAGQIGRLQVRGCSNFGGYLKRPQLN-GTDADGWFDTGD 425

Query: 407 IG 408
           + 
Sbjct: 426 LA 427

Length = 547

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 60.1 bits (146), Expect = 8e-10
 Identities = 59/299 (19%), Positives = 98/299 (32%), Gaps = 83/299 (27%)

Query: 129 ISTIMYTSGTTGEPKGVVLTNQAIVAEV--------LSVDQMFVVTGKVCSEEDTYFSFL 180
            + + +TSGTTG PK V+ T+   +  +        L  D +          +  + S  
Sbjct: 83  PALLYFTSGTTGLPKMVLHTHSYPLGHLVTGAYWLDLRPDDLHWTIADPGWAKGAWSSLF 142

Query: 181 -PLAHIYDQIIETHCIHKGCSIGFWRG---DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 236
            P                G ++  + G   D    +E ++    T F   P  Y  +   
Sbjct: 143 APWLL-------------GAAVFVYHGRRFDAERTLELLERYGVTTFCAPPTAYRML--- 186

Query: 237 ISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAML 296
                                     +++ +             FS +R          +
Sbjct: 187 --------------------------LQQDLSSYD---------FSHLRHV--------V 203

Query: 297 SGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMI--GTVGVPMTTVEA 354
           S   PL   V ++ R  +G P+  GYG TE+              +  G++G P      
Sbjct: 204 SAGEPLNPEVIDWWRAATGLPIRDGYGQTETGLLVANFPG---MEVKPGSMGRPAPGY-- 258

Query: 355 RLESVPEMGYDALSSVPRGEICL----RGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGE 409
           R+  + + G + L     G+I +    R   LF GY K P+ TE  I   W+ TGD   
Sbjct: 259 RVAIIDDEG-NELPPGEEGDIAVRVKPRPPGLFRGYLKDPEKTEATIRGDWYLTGDRAI 316

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|140318 PTZ00297, PTZ00297, pantothenate kinase; Provisional

 Score = 59.9 bits (145), Expect = 1e-09
 Identities = 81/375 (21%), Positives = 141/375 (37%), Gaps = 52/375 (13%)

Query: 5   GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE 64
           GV PGD  G+        +I   AC     T +PL      + +  +I+  ++ + F   
Sbjct: 478 GVRPGDVIGVDCEASRNIVILEVACALYGFTTLPLVGK--GSTMRTLIDEHKIKVVFADR 535

Query: 65  NKIPSILSCLPRCCLYLKTIVSFANVSSSQKKE----AEELGVSCFSWEEFLQLGTLDCE 120
           N + +IL+C  R    L+T+V      S   ++    A +L ++   +E   Q G L   
Sbjct: 536 NSVAAILTCRSR---KLETVV---YTHSFYDEDDHAVARDLNITLIPYEFVEQKGRLCPV 589

Query: 121 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV----AEVLSVDQMFVVTGKVCS--EED 174
              +  T  +   Y    T    G      A+V    A+VL      V+TG + S  ++ 
Sbjct: 590 PLKEHVTTDTVFTYVVDNTTSASG---DGLAVVRVTHADVLRDISTLVMTGVLPSSFKKH 646

Query: 175 TYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIY 234
               F P A +++++        G ++     D  +L     + +PT+    P ++    
Sbjct: 647 LMVHFTPFAMLFNRVFVLGLFAHGSAVA--TVDAAHLQRAFVKFQPTILVAAPSLFSTSR 704

Query: 235 TGISNKISSGGALSKKLFEFAYNYK--LGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRL 292
             +S       A+   LFE A+  +  L N+       + + LL  + F   +E  GG  
Sbjct: 705 LQLSRANERYSAVYSWLFERAFQLRSRLINIH-----RRDSSLLRFIFFRATQELLGGC- 758

Query: 293 QAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTS-LADVF--NMIGTV---G 346
                        VE+ +   S    +  + L E  S C+   L +VF     G     G
Sbjct: 759 -------------VEKIVLCVSEESTS--FSLLEHISVCYVPCLREVFFLPSEGVFCVDG 803

Query: 347 VPMTTVEARLESVPE 361
            P  +++  LE   E
Sbjct: 804 TPAPSLQVDLEPFDE 818

Length = 1452

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 44/184 (23%), Positives = 76/184 (41%), Gaps = 24/184 (13%)

Query: 3   SRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFV 62
           + G+ PGDR  +      +++ A  AC    +  VPL   +G    E  I      +A  
Sbjct: 68  ALGLKPGDRVALIAETDGDFVEAFFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLA-- 125

Query: 63  QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP 122
                    S  P   +    ++ + N ++          +   S   F  L   D  LP
Sbjct: 126 ---------SAQPAAIITPDELLPWVNEATHGNP-----LLHVLSHAWFKALPEADVALP 171

Query: 123 PKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEV--LSVDQMFVVTGKVCSEEDTYFSFL 180
                +I+ + Y+SG+T  P+GV++T++A++A +  +S D + V  G  C       S+L
Sbjct: 172 RPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRC------VSWL 225

Query: 181 PLAH 184
           P  H
Sbjct: 226 PFYH 229

Length = 579

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 59.1 bits (144), Expect = 2e-09
 Identities = 35/152 (23%), Positives = 59/152 (38%), Gaps = 28/152 (18%)

Query: 2   RSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAF 61
           R+RGV PGD   +     PE ++A+ A       YVPL     A  + F++  +   +  
Sbjct: 30  RARGVGPGDVVALLLERSPELVVAILAILKAGAAYVPLDPAYPAERLAFMLEDSGARVLL 89

Query: 62  VQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCEL 121
             E+  P                             A++L +     E   +        
Sbjct: 90  TDESLAPLA--------------------------RADQLPLVILEEELDAEDA--GPPA 121

Query: 122 PPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV 153
           P     +++ +MYTSG+TG PKGV + ++ +V
Sbjct: 122 PAVDADDLAYVMYTSGSTGRPKGVAVPHRGVV 153

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 39/146 (26%), Positives = 62/146 (42%), Gaps = 7/146 (4%)

Query: 3   SRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFV 62
           S G+  GD+  ++  NCPE+I             VP+   L      +I+ +++ S+   
Sbjct: 56  SLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQASLLVT 115

Query: 63  QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP 122
                P            L+ I     ++       +  GVS F+  +  Q  TL C  P
Sbjct: 116 SAQFYPMYRQIQQEDATPLRHIC----LTRVALPADD--GVSSFTQLKAQQPATL-CYAP 168

Query: 123 PKKKTNISTIMYTSGTTGEPKGVVLT 148
           P    + + I++TSGTT  PKGVV+T
Sbjct: 169 PLSTDDTAEILFTSGTTSRPKGVVIT 194

Length = 517

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 31/153 (20%), Positives = 58/153 (37%), Gaps = 12/153 (7%)

Query: 2   RSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAF 61
            + G+  GD   +   N PE ++A+ A     +    L+     +   +++  A +S   
Sbjct: 55  EALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRRTALHPLGSLDDHAYVLEDAGISTLI 114

Query: 62  VQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCEL 121
           V           L      LK +++   V      +  +L           + G      
Sbjct: 115 VDPAPFVERALALLARVPSLKHVLTLGPVP-----DGVDL------LAAAAKFGPAPLV- 162

Query: 122 PPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA 154
                 +I+ + YT GTTG+PKGV+ T+++I  
Sbjct: 163 AAALPPDIAGLAYTGGTTGKPKGVMGTHRSIAT 195

Length = 524

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 58.3 bits (142), Expect = 3e-09
 Identities = 36/99 (36%), Positives = 44/99 (44%), Gaps = 25/99 (25%)

Query: 321 GYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGN 380
           GYGLTE  S      AD    +  VG P+   E +L                GEI LRG 
Sbjct: 270 GYGLTEMASTVCAKRAD---GLAGVGSPLPGREVKLVD--------------GEIWLRGA 312

Query: 381 TLFSGYYK----RPDLTEEVIVDGWFHTGDIGEWQPMEL 415
           +L  GY++     P L  +   +GWF T D GEWQ  EL
Sbjct: 313 SLALGYWRQGQLVP-LVND---EGWFATRDRGEWQNGEL 347

Length = 458

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 7/128 (5%)

Query: 285 REAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM-IG 343
           R  +  RL+A+ SG   L   + E+ R   G  + + YG TE  +    + A +     G
Sbjct: 202 RARYDLRLRAVASGGESLGEELLEWARDELGLTVNEFYGQTE-ANLVVGNCAALGPARPG 260

Query: 344 TVGVPMTTVEARLESVPEMGYDALSSVPRGEICL-RGN-TLFSGYYKRPDLTEEVIVDGW 401
           ++G P+      +  V + G         GEI + R +  +F GY+  P+ T       W
Sbjct: 261 SMGKPVPG--HEVAVVDDAGRPVPPGE-VGEIAVKRPDPVMFLGYWNNPEATAAKFAGDW 317

Query: 402 FHTGDIGE 409
             TGD+G 
Sbjct: 318 LLTGDLGR 325

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 57.2 bits (139), Expect = 5e-09
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 7/60 (11%)

Query: 127 TNISTIMYTSGTTGEPKGVVLTN-QAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI 185
            + + I+YTSGTTG PKGV+LT+ Q + A  L+   +          +D   + LPL HI
Sbjct: 81  VDTAAILYTSGTTGPPKGVLLTHAQLLFAARLAARLL------GLRPDDVLLTPLPLFHI 134

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score = 57.4 bits (139), Expect = 5e-09
 Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 14/123 (11%)

Query: 292 LQAMLSGAAPLPIH-VEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFN-MIGTVGVPM 349
           L+  L G   +P     E  +   G  L   YG TES      +L D  +  + T G   
Sbjct: 304 LRFFLCGGTTIPKKVARECQQ--RGIKLLSVYGSTESSPHAVVNLDDPLSRFMHTDGYAA 361

Query: 350 TTVEARLESVPEMGYDALSSVPRG---EICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTG 405
             VE ++        +A  ++P G   E   RG  +F GY   P+LT   +  +GW+++G
Sbjct: 362 AGVEIKVVD------EARKTLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSG 415

Query: 406 DIG 408
           D+ 
Sbjct: 416 DLC 418

Length = 547

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score = 57.1 bits (138), Expect = 8e-09
 Identities = 46/194 (23%), Positives = 70/194 (36%), Gaps = 39/194 (20%)

Query: 4   RGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQ 63
           RGV  GDR  I   N  E++ ++ A N      VP+   L    + F+++     +   +
Sbjct: 62  RGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTE 121

Query: 64  ENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV----------SCFSWEEFLQ 113
                                 + A V+++ +     L            S   +E+   
Sbjct: 122 A---------------------ALAPVATAVRDIVPLLSTVVVAGGSSDDSVLGYED--L 158

Query: 114 LGTLDCELPPKKKTNIST--IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCS 171
           L        P    N S   IMYTSGTTG PKG VLT+  +  + +      + T     
Sbjct: 159 LAEAGPAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAM----TCLRTNGADI 214

Query: 172 EEDTYFSFLPLAHI 185
             D  F  +PL HI
Sbjct: 215 NSDVGFVGVPLFHI 228

Length = 542

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 36/120 (30%), Positives = 52/120 (43%), Gaps = 11/120 (9%)

Query: 292 LQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTV-GVPMT 350
           L   L   AP+P  + E      GA +   +G+TE+ +   T   D      T  G P+ 
Sbjct: 312 LFTFLCAGAPIPGILVERAWELLGALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLP 371

Query: 351 TVEARLESVPEMGYDALSSVPRGEI---CLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDI 407
            VE ++         A   + +GE     +RG + F GY KRP L      +GWF TGD+
Sbjct: 372 GVEVKVID----ANGA--KLSQGETGRLLVRGCSNFGGYLKRPHLN-STDAEGWFDTGDL 424

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 91/443 (20%), Positives = 149/443 (33%), Gaps = 118/443 (26%)

Query: 2   RSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVS-IA 60
           ++ G+  GD   +      E+  +M A +      +P    L A  + + I  A +  I 
Sbjct: 65  KALGIGKGDTVMLTLKRRYEFWFSMLALHKIGAIAIPATHMLTAKDIVYRIEAAGIKMIV 124

Query: 61  FVQENKIP-SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDC 119
            + E+ +P  I    P C      ++    V     +           W +F +    + 
Sbjct: 125 CIGEDGVPEHIDEAAPECGSPTLLVL----VGDPVPE----------GWIDFDK-EIENA 169

Query: 120 --ELPP------KKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKV-- 169
             +             +I  + +TSGTTG PK        +V    +     +VT K   
Sbjct: 170 SPDFERPTGNDATCNDDILLVYFTSGTTGMPK--------MVEHDHTYPLGHIVTAKYWQ 221

Query: 170 CSEE--------DTYFSFLPLAHIYDQIIETHCIHKGCSI---GFWRGDVRYLMEDIQEL 218
             +E        DT +       +Y Q I       G ++    + + D + L+E I++ 
Sbjct: 222 NVKEGGLHLTVADTGWGKAVWGKLYGQWI------AGAAVFVYDYDKFDPKNLLEKIEKY 275

Query: 219 KPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDS 278
             T F   P +Y R    I   +S             Y+                     
Sbjct: 276 GVTTFCAPPTIY-RFL--IKEDLSK------------YD--------------------- 299

Query: 279 LVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV 338
              S +R           +G    P     F   T G  L +G+G TE       ++A  
Sbjct: 300 --LSSLRYC-------TTAGEPLNPEVFNTFKEKT-GIKLMEGFGQTE----TTLTIATF 345

Query: 339 FNMI---GTVGVPMTTVEARLESVPEMGYDALSSVP--RGEICLRGNT-----LFSGYYK 388
             M    G++G P    +  +     +  D  S      GEI +R +      LF GYY+
Sbjct: 346 PWMEPKPGSMGKPSPGYDIDI-----IDPDGKSCEVGEEGEIVIRTSDGKPLGLFMGYYR 400

Query: 389 RPDLTEEVIVDGWFHTGDIGEWQ 411
            P+ T EV  DG++HTGD   W 
Sbjct: 401 DPERTAEVWHDGYYHTGDTA-WM 422

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated

 Score = 54.8 bits (132), Expect = 4e-08
 Identities = 81/303 (26%), Positives = 115/303 (37%), Gaps = 82/303 (27%)

Query: 124 KKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA 183
           K   +++ I++TSGT   PKGV LT+  ++A   +  + F        E+D   SFLP  
Sbjct: 180 KDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPK-----EDDVMMSFLPPF 234

Query: 184 HIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISS 243
           H Y               GF          +   L P + SGVP V+           + 
Sbjct: 235 HAY---------------GF----------NSCTLFP-LLSGVPVVF-----------AY 257

Query: 244 GGALSKKLFEFA--------------YNYKLGNMKKGMPQNKAAPLLDSLVFSKIR-EAF 288
                KK+ E                ++Y L   KK   Q      L SL F  I  +AF
Sbjct: 258 NPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKK---QESC---LPSLRFVVIGGDAF 311

Query: 289 GGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFT-SLADVFNMIGTVGV 347
              L              +E L+      L QGYG TE CS   T +  +       VG+
Sbjct: 312 KDSLY-------------QEALKTFPHIQLRQGYGTTE-CSPVITINTVNSPKHESCVGM 357

Query: 348 PMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDG--WFHTG 405
           P+  ++  +  V E     +SS   G +  RG +LFSGY         V + G  W+ TG
Sbjct: 358 PIRGMDVLI--VSEETKVPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTG 415

Query: 406 DIG 408
           D+G
Sbjct: 416 DLG 418

Length = 539

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 54.4 bits (131), Expect = 6e-08
 Identities = 36/121 (29%), Positives = 51/121 (42%), Gaps = 10/121 (8%)

Query: 289 GGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVP 348
             R++  L    P  +H     R   G  L  GYG TE+      +        G++G  
Sbjct: 293 AHRVRVALGPGVPAALHAAFRERF--GVDLLDGYGSTETNFVIAVTHGS--QRPGSMGRL 348

Query: 349 MTTVEARLESVPEMGYDALSSVPRGEICLRGNTLF---SGYYKRPDLTEEVIVDGWFHTG 405
               EAR+  V E   +     P GE+ LR +  F   +GY+  P+ T E   + WFHTG
Sbjct: 349 APGFEARV--VDEHDQELPDGEP-GELLLRADEPFAFATGYFGMPEKTVEAWRNLWFHTG 405

Query: 406 D 406
           D
Sbjct: 406 D 406

Length = 542

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 53.9 bits (130), Expect = 7e-08
 Identities = 42/190 (22%), Positives = 70/190 (36%), Gaps = 12/190 (6%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           +R RGV  GDR  ++  NCP++ I           +VP+      + + + +N A   + 
Sbjct: 75  LRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVL 134

Query: 61  FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS-----CFSWEEFLQL- 114
              +   P +        L    + S A+V  ++        +           + L   
Sbjct: 135 LALDQLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDSLRAPRLAAAGAIDLLPAL 194

Query: 115 --GTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSE 172
              T    LPP     ++ + YT GTTG PKG   T + +V    +          V  E
Sbjct: 195 RACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAA----AYAVAVVGGE 250

Query: 173 EDTYFSFLPL 182
           +  + SFLP 
Sbjct: 251 DSVFLSFLPE 260

Length = 567

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 53.7 bits (130), Expect = 7e-08
 Identities = 25/131 (19%), Positives = 39/131 (29%), Gaps = 32/131 (24%)

Query: 301 PLPI-HVEEFLRVTSGAPLTQGYGLTESCSGC------------FTSLADVFNMIGTV-- 345
            LP    +   R    A +   YG TE+                   L      IG    
Sbjct: 225 VLPKKLAKALRRRFPNARIINLYGPTEATVAVTAYEVTPEPLSRNEPLP-----IGYPKP 279

Query: 346 GVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVD----GW 401
           G+    ++     VP            GE+ + G  +  GY   P+ T +         W
Sbjct: 280 GLRALILDEDGRPVPP--------GEEGELVIAGPQVSPGYLNNPEKTAKAFFQDEGQRW 331

Query: 402 FHTGDIGEWQP 412
           + TGD+   + 
Sbjct: 332 YRTGDLVYLED 342

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 53.7 bits (130), Expect = 9e-08
 Identities = 46/181 (25%), Positives = 72/181 (39%), Gaps = 47/181 (25%)

Query: 3   SRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYV---PLYDTLGANAVEFIINHAEVS- 58
           + G+  GDR GI+  N PEW++   A        V   P Y     + +E+ +N +    
Sbjct: 62  ALGIEKGDRVGIWAPNVPEWVLTQFATAKIGAILVTINPAYRL---SELEYALNQSGCKA 118

Query: 59  ------------IAFVQENKIPSILSCLPRCCL-----YLKTIVSFANVSSSQKKEAEEL 101
                       +A + E   P + +C P          L+ ++             +E 
Sbjct: 119 LIAADGFKDSDYVAMLYE-LAPELATCEPGQLQSARLPELRRVIFLG----------DEK 167

Query: 102 GVSCFSWEEFLQLGT--LDCELPPKKKT-------NISTIMYTSGTTGEPKGVVLTNQAI 152
                +++E L LG    D EL  ++ T       NI    YTSGTTG PKG  LT++ I
Sbjct: 168 HPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQ---YTSGTTGFPKGATLTHRNI 224

Query: 153 V 153
           +
Sbjct: 225 L 225

Length = 559

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 34/109 (31%), Positives = 48/109 (44%), Gaps = 29/109 (26%)

Query: 315 GAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESV--PEMGYDA------ 366
           G  L   YG+TE+             ++G +G      + R  S+  P   Y+A      
Sbjct: 312 GVRLLTSYGMTET-------------IVGIIGDRPGD-KRRWPSIGRPGFCYEAEIRDDH 357

Query: 367 ---LSSVPRGEICLRG---NTLFSGYYKRPDLTEEVI-VDGWFHTGDIG 408
              L +   GEIC++G    T+F  YY  P  T +V+  DGW HTGD G
Sbjct: 358 NRPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTG 406

Length = 517

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 52.9 bits (128), Expect = 2e-07
 Identities = 49/160 (30%), Positives = 67/160 (41%), Gaps = 34/160 (21%)

Query: 273 APLLDSLVFSKIREAFGGRLQAMLSG--AAPLPIHVEEFLRVTSGAPLTQGYGLTE---- 326
           A L + LV  +  EA  G L+ +L G        HV   L    G  L  GYG TE    
Sbjct: 225 AALFNQLV-DEDPEALAG-LRQLLVGGDVLSPA-HVRRVLAACPGLRLINGYGPTENTTF 281

Query: 327 SCSGCFTSLADVFNMIGTV--GVPM--TTV---EARLESVPEMGYDALSSVPRGEICLRG 379
           S   C   +  +     ++  G P+  TTV   +   + VP         VP GE+ + G
Sbjct: 282 ST--CH-VITRLDEAADSIPIGRPIPNTTVYILDEEGQPVPI-------GVP-GELYVGG 330

Query: 380 NTLFSGYYKRPDLTEEVIVD-----G--WFHTGDIGEWQP 412
           + L  GY  RP+LT E  V      G   + TGD+  W+P
Sbjct: 331 DGLALGYLNRPELTAERFVPDPFGPGERLYRTGDLARWRP 370

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 53.4 bits (129), Expect = 2e-07
 Identities = 41/130 (31%), Positives = 58/130 (44%), Gaps = 23/130 (17%)

Query: 296  LSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV---------FNMIGTVG 346
            ++GA  L   V +      G  + +GYG TE+      +L DV          +  G+VG
Sbjct: 904  VAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVG 963

Query: 347  VPMTTVEARLESV-PEMGYDALSSVPRGE---ICLRGNTLFSGYYKRPDLTEEVIVD--- 399
            +P+  V  R+  V PE        +P GE   I + G  +  GY   P+ T EVI D   
Sbjct: 964  MPLPGVAVRI--VDPE----TFEELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDG 1017

Query: 400  -GWFHTGDIG 408
             GW+ TGD G
Sbjct: 1018 IGWYVTGDKG 1027

Length = 1146

>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS)

 Score = 52.6 bits (127), Expect = 2e-07
 Identities = 46/162 (28%), Positives = 62/162 (38%), Gaps = 25/162 (15%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAV--EFIINHAEVS 58
           +R  GV PGDR   Y  N PE +IAM A  S    +       G  AV   F     +V 
Sbjct: 103 LRDLGVKPGDRVAGYLPNVPEAVIAMLATASIGAIWSSCSPDFGVEAVLDRFGQIEPKVL 162

Query: 59  IA----------FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 108
            A            +  KI  I+  LP     L+ +V    +SS       +     FS 
Sbjct: 163 FAVDGYVYNGKEHDRREKIAEIVKGLPS----LEAVVVVPYLSS-----DAQPAALKFSA 213

Query: 109 EEFLQLGTLDCELPPK-KKTNIST---IMYTSGTTGEPKGVV 146
              L     D   P + ++        I+Y+SGTTG PK +V
Sbjct: 214 LTLLWSLAGDRAAPLEFERLPFDHPLWILYSSGTTGLPKCIV 255

AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 52.6 bits (127), Expect = 3e-07
 Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 5/64 (7%)

Query: 121 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 180
            P  K  + +TI+++SG+ GEPKGV+L++  I++ +  +  +F +       +D   S L
Sbjct: 776 GPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLR-----NDDVILSSL 830

Query: 181 PLAH 184
           P  H
Sbjct: 831 PFFH 834

Length = 1146

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 52.2 bits (125), Expect = 3e-07
 Identities = 84/410 (20%), Positives = 148/410 (36%), Gaps = 70/410 (17%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           +R  GV   +R  +   +  ++ IA        I  V L   L A+   +++  +   + 
Sbjct: 47  LRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLTADDYAYMLEDSRARVV 106

Query: 61  FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE 120
           FV    +P I + L +   +L+  V      + + + AE L       E+F        +
Sbjct: 107 FVSGELLPVIKAALGKSP-HLEHRVVVGRPEAGEVQLAELLATES---EQF--------K 154

Query: 121 LPPKKKTNISTIMYTSGTTGEPKGVVLT--NQAIVAEVLSVDQMFVVTGKVC-SEEDTYF 177
               +  + +  +Y+SG+TG PKGVV T  N    AE+ + + + +    V  S    +F
Sbjct: 155 PAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFF 214

Query: 178 SF-LPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTG 236
           ++ L  A  +   +    +  G      R     + + ++  +PT+F GVP +Y      
Sbjct: 215 AYGLGNALTFPMSVGATTVLMG-----ERPTPDAVFDRLRRHQPTIFYGVPTLY------ 263

Query: 237 ISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAML 296
                                         M  +   P  D +           RL+   
Sbjct: 264 ----------------------------AAMLADPNLPAEDQV-----------RLRLCT 284

Query: 297 SGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARL 356
           S    LP  V +  +   G  +  G G TE      ++L       GT G P+     RL
Sbjct: 285 SAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGDVRY-GTSGKPVPGYRLRL 343

Query: 357 ESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGD 406
             V + G D  +  P GE+ + G +  + Y+     T +     W  +GD
Sbjct: 344 --VGDGGQDVAAGEP-GELLISGPSSATMYWNNRAKTRDTFQGEWTRSGD 390

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 51.6 bits (123), Expect = 4e-07
 Identities = 38/140 (27%), Positives = 59/140 (42%), Gaps = 25/140 (17%)

Query: 290 GRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGC-FTSLADVFNMI------ 342
           G +  +  G+ P    V++  R+  G  +   YGLTE+     F    D +N +      
Sbjct: 301 GPVHVLTGGSPPPAALVKKVQRL--GFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQM 358

Query: 343 ------GTVGVPMTTVEAR----LESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDL 392
                 G   + +  V+ +     ESVP  G         GEI ++G+++  GY K P  
Sbjct: 359 ELKARQGVSILGLADVDVKNKETQESVPRDGKTM------GEIVIKGSSIMKGYLKNPKA 412

Query: 393 TEEVIVDGWFHTGDIGEWQP 412
           T E    GW +TGD+G   P
Sbjct: 413 TSEAFKHGWLNTGDVGVIHP 432

Length = 579

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 51.1 bits (123), Expect = 5e-07
 Identities = 39/184 (21%), Positives = 65/184 (35%), Gaps = 40/184 (21%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           +R+ GV    R  +   N  +W+IA  AC    I  +P+     A   + ++N A     
Sbjct: 19  LRALGVK---RIALALDNSIDWVIADLACLQAGIVCIPIPHFFSAQQTQHLLNDAGAD-- 73

Query: 61  FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKE-AEELGVSCFSWEEFLQLGTLDC 119
                                  ++S    ++S        LG   +             
Sbjct: 74  ----------------------LLISDDPDAASALHTPFATLGEDLYIA-------LRPS 104

Query: 120 ELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSF 179
             P +     + I YTSG+TG+PKGV L+  A+     S+ +   +      E + +   
Sbjct: 105 ANPVELPAGTAKITYTSGSTGQPKGVCLSAAALETVAQSLAEAIAIL-----EPERHLCL 159

Query: 180 LPLA 183
           LPLA
Sbjct: 160 LPLA 163

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 51.0 bits (123), Expect = 6e-07
 Identities = 42/135 (31%), Positives = 56/135 (41%), Gaps = 30/135 (22%)

Query: 295 MLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTE----SCSGCFTSLADVFNMIGTVGVPM- 349
            L G   LP  + E L  T GA L   YG TE    S     T+         T+G P+ 
Sbjct: 211 ALCGGEALPRDLAERLLST-GAELWNMYGPTETTIWSTCARVTAADGP----VTIGRPIA 265

Query: 350 -TTV---EARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDG----- 400
            T V   +  L+ VP         VP GE+ + G+ +  GY  RP+LT E  V       
Sbjct: 266 NTQVYVLDEDLQPVPP-------GVP-GELYIGGDGVARGYLGRPELTAERFVPDPFDDP 317

Query: 401 ---WFHTGDIGEWQP 412
               + TGD+  W+P
Sbjct: 318 GGRLYRTGDLVRWRP 332

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 50.7 bits (122), Expect = 9e-07
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 5/51 (9%)

Query: 134 YTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH 184
           YTSG+TG PKGV++T+  ++A   ++  +    G     +D   S+LPL H
Sbjct: 155 YTSGSTGAPKGVMVTHGNLLA---NLRAIARAFG--LDPDDVGVSWLPLYH 200

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 50.3 bits (121), Expect = 1e-06
 Identities = 34/166 (20%), Positives = 59/166 (35%), Gaps = 29/166 (17%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           +R+ GV PGD   +      E I+A+         YVP+     A     I+  A     
Sbjct: 29  LRAAGVAPGDLVAVVMPKGWEQIVAVLGILLAGAAYVPIDPDQPAERRAAILARAGARAV 88

Query: 61  FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE 120
                                              +  E   +   + +           
Sbjct: 89  LTD----------------------------PGLAQPEEAPDLLVVADDAAAAESPAP-P 119

Query: 121 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVT 166
            P     +++ +++TSG+TGEPKGV++T++A V  +L V++ F V 
Sbjct: 120 PPRVDPDDLAYVIFTSGSTGEPKGVMITHRAAVNTILDVNRRFGVG 165

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 47/182 (25%), Positives = 65/182 (35%), Gaps = 29/182 (15%)

Query: 254 FAYNYKLGNMKKG-----MPQNKAAPLLDSLVFSKIREAFGG-----RLQAMLSGAAPLP 303
           F ++  LG +  G      P   AA    +L   ++   FG      R+       A  P
Sbjct: 235 FGFSTLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTAGERADFP 294

Query: 304 IHVEEF--------------LRVTSGAPLTQGYGLTE--SCSGCFTSLADVFNMIGTVGV 347
                F              L    G PLT  YG +E  +      +   V   I   G 
Sbjct: 295 -SARLFGFASFAPALGELAALARARGVPLTGLYGSSEVQALVALQPATDPVSVRIEGGGR 353

Query: 348 PMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHTGD 406
           P +  EAR+ +        L     GEI +R  +L  GY   PD T   +  DG+F TGD
Sbjct: 354 PASP-EARVRARDPQDGALLPDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGD 412

Query: 407 IG 408
           +G
Sbjct: 413 LG 414

Length = 540

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 49.2 bits (118), Expect = 3e-06
 Identities = 44/167 (26%), Positives = 70/167 (41%), Gaps = 32/167 (19%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAE---- 56
           +R  GV  GDR  IY    PE +IAM AC      +  ++    +  +   I+ A+    
Sbjct: 90  LRKLGVVKGDRVIIYMPMIPEAVIAMLACARIGAIHSVVFGGFASKELASRIDDAKPKLI 149

Query: 57  VSIAF-VQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKK------------EAEELGV 103
           V+ +F ++  ++           +  K ++  A +  SQ K             A     
Sbjct: 150 VTASFGIEPGRV-----------VPYKPLLDKA-LELSQHKPHKVLILNRGQVPAPLKPG 197

Query: 104 SCFSWEEFL-QLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTN 149
               W E + +   +DC   P + T+   I+YTSGTTG+PKGVV   
Sbjct: 198 RDLDWAELMAKARPVDCV--PVESTDPLYILYTSGTTGKPKGVVRDT 242

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 48.3 bits (116), Expect = 4e-06
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 7/43 (16%)

Query: 373 GEICLRGNTLFSGYYKRPDLTEEVI-------VDGWFHTGDIG 408
           GEI +RG ++ +GY+ RP+ T E           GW  TGD+G
Sbjct: 383 GEIWVRGPSVAAGYWNRPEATAETFGARLATDEGGWLRTGDLG 425

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score = 48.3 bits (115), Expect = 5e-06
 Identities = 67/294 (22%), Positives = 107/294 (36%), Gaps = 57/294 (19%)

Query: 128 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVC----SEEDTYFSFLPLA 183
           +   I +TSGTTG PKGV +++ A++ + L+         K+      E+D Y    PL 
Sbjct: 173 DAVLICFTSGTTGRPKGVTISHSALIVQSLA---------KIAIVGYGEDDVYLHTAPLC 223

Query: 184 HIYD-QIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVY-DRIYTGISNKI 241
           HI          +   C +   + D +  ++ I++   T    VP +  D I     +  
Sbjct: 224 HIGGLSSALAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMT 283

Query: 242 SSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVF----SKIREAFGGRLQAMLS 297
                  +K+          N    +     + LL         +K+  A+G  +    S
Sbjct: 284 WKVFPSVRKIL---------NGGGSLS----SRLLPDAKKLFPNAKLFSAYG--MTEACS 328

Query: 298 GAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTV--GVPMTTVEAR 355
               + +H      + S     Q    T+S            +    V  G P   VE +
Sbjct: 329 SLTFMTLHDP---TLESPKQTLQTVNQTKS---------SSVHQPQGVCVGKPAPHVELK 376

Query: 356 LESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHTGDIG 408
           +      G D  S V  G I  RG  +  GY+ +   T  V+  DGW  TGDIG
Sbjct: 377 I------GLDESSRV--GRILTRGPHVMLGYWGQNSETASVLSNDGWLDTGDIG 422

Length = 563

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 48.4 bits (116), Expect = 5e-06
 Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 19/94 (20%)

Query: 320  QGYGLTESCSG--CFTSLADVFNMIGTVGVPMTTVEARLESVP--EMGYDALSSVPRGEI 375
            +GYG+TE+       T +    N  GTVG  +  +E RLE VP  + G         G +
Sbjct: 937  EGYGVTETAPVIALNTPM---HNKAGTVGRLLPGIEYRLEPVPGIDEG---------GRL 984

Query: 376  CLRGNTLFSGYYK--RPDLTEEVIVDGWFHTGDI 407
             +RG  +  GY +   P + E    DGW+ TGDI
Sbjct: 985  FVRGPNVMLGYLRAENPGVLEP-PADGWYDTGDI 1017

Length = 1140

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 35/122 (28%), Positives = 48/122 (39%), Gaps = 33/122 (27%)

Query: 291 RLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMT 350
            L A+L G  P P  V +     +G  + + YG++E+  GC      V++     GVP+ 
Sbjct: 152 ELDAVLVGGGPAPAPVLD-AAAAAGINVVRTYGMSETSGGC------VYD-----GVPLD 199

Query: 351 TVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYY---KRPDLTEEVIVDGWFHTGDI 407
            V  R+E               G I L G TL  GY          E     GWF T D+
Sbjct: 200 GVRVRVED--------------GRIALGGPTLAKGYRNPVDPDPFAEP----GWFRTDDL 241

Query: 408 GE 409
           G 
Sbjct: 242 GA 243

Length = 358

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 48.6 bits (116), Expect = 6e-06
 Identities = 34/153 (22%), Positives = 63/153 (41%), Gaps = 24/153 (15%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           + + GV P    GI      E ++ + A       YVPL      + + ++++ + V + 
Sbjct: 554 LIAAGVGPDVLVGIAVERSIEMVVGLLAVLKAGGAYVPLDPEYPQDRLAYMLDDSGVRLL 613

Query: 61  FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE 120
             Q      +L+ LP            A + S    E  +L         +      +  
Sbjct: 614 LTQ----SHLLAQLPVP----------AGLRSLCLDEPADL------LCGYSGHNP-EVA 652

Query: 121 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV 153
           L P    N++ ++YTSG+TG+PKGV +++ A+ 
Sbjct: 653 LDPD---NLAYVIYTSGSTGQPKGVAISHGALA 682

Length = 3956

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 48.4 bits (115), Expect = 6e-06
 Identities = 64/301 (21%), Positives = 103/301 (34%), Gaps = 70/301 (23%)

Query: 128  NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH--I 185
            N++ ++YTSG+TG PKGV +++ ++V  + +  + + +T      +   FSF   +H  +
Sbjct: 4695 NLAYVIYTSGSTGRPKGVAVSHGSLVNHLHATGERYELTPDDRVLQFMSFSF-DGSHEGL 4753

Query: 186  YDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGG 245
            Y  +I    +        W  D   L  +I E + T+    P                  
Sbjct: 4754 YHPLINGASVVIRDD-SLW--DPERLYAEIHEHRVTVLVFPP------------------ 4792

Query: 246  ALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIH 305
                      Y  +L        ++   P L    F    EA       +   A      
Sbjct: 4793 ---------VYLQQLAE---HAERDGEPPSLRVYCFGG--EAVAQASYDLAWRALK---- 4834

Query: 306  VEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGY- 364
                        L  GYG TE+        A   +  G   +P+ T           GY 
Sbjct: 4835 ---------PVYLFNGYGPTETTVTVLLWKARDGDACGAAYMPIGTPLGNRS-----GYV 4880

Query: 365  --DALSSVP---RGEICLRGNTLFSGYYKRPDLTEEVIVDGWF--------HTGDIGEWQ 411
                L+ +P    GE+ L G  +  GY +RP LT E  V   F         TGD+  ++
Sbjct: 4881 LDGQLNPLPVGVAGELYLGGEGVARGYLERPALTAERFVPDPFGAPGGRLYRTGDLARYR 4940

Query: 412  P 412
             
Sbjct: 4941 A 4941

Length = 5163

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 47.6 bits (113), Expect = 1e-05
 Identities = 73/409 (17%), Positives = 124/409 (30%), Gaps = 89/409 (21%)

Query: 1    MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
            +  RGV P    G+      E ++ + A       YVPL        + +++  +   + 
Sbjct: 3099 LIERGVGPDVLVGVAVERSLEMVVGLLAILKAGGAYVPLDPEYPEERLAYMLEDSGAQLL 3158

Query: 61   FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE 120
              Q +    +   +    L                +  E         E    + T+   
Sbjct: 3159 LSQSHLRLPLAQGVQVLDL---------------DRGDENYA------EANPAIRTM--- 3194

Query: 121  LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 180
                   N++ ++YTSG+TG+PKGV + + A+   +  + Q + +       + T FSF 
Sbjct: 3195 -----PENLAYVIYTSGSTGKPKGVGIRHSALSNHLCWMQQAYGLGVGDRVLQFTTFSFD 3249

Query: 181  PLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNK 240
                                               +EL   + SG   V           
Sbjct: 3250 VFV--------------------------------EELFWPLMSGARVVLA--------- 3268

Query: 241  ISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAA 300
                      L     N +  ++    P    A L +               + +  G A
Sbjct: 3269 -GPEDWRDPALLVELINSEGVDVLHAYPSMLQAFLEEEDAHR-----CTSLKRIVCGGEA 3322

Query: 301  PLPIHVEEFLRVTSGAPLTQGYGLTESC-SGCFTSLADVFNMIGTVGVPMTTVEARLESV 359
                  +   +V +G PL   YG TE+  +       +       +G P+      +   
Sbjct: 3323 LPA---DLQQQVFAGLPLYNLYGPTEATITVTHWQCVEEGKDAVPIGRPIANRACYILD- 3378

Query: 360  PEMGYDALSSVPRG---EICLRGNTLFSGYYKRPDLTEEVIVDGWFHTG 405
                  +L  VP G   E+ L G  L  GY+ RP LT E  V   F  G
Sbjct: 3379 -----GSLEPVPVGALGELYLGGEGLARGYHNRPGLTAERFVPDPFVPG 3422

Length = 5163

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score = 47.1 bits (112), Expect = 1e-05
 Identities = 59/313 (18%), Positives = 106/313 (33%), Gaps = 84/313 (26%)

Query: 130 STIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQI 189
           + ++YTSGTTG PKG  ++ +        V    +         D  ++ +PL H     
Sbjct: 90  AALIYTSGTTGLPKGCAISWRR-----TLVTSNPLSHDLNLQFPDRTYTCMPLYHGTAAF 144

Query: 190 IET-HCIHKGCSIG---------FWRGDVR----YLMEDIQELKPTMFSGVPRVYDRIYT 235
           +   +C+  G ++          FW+ DVR     +++ + EL   + +  P  YDR + 
Sbjct: 145 LGLCYCLGSGGTLCLSRKFSASQFWK-DVRDSEATIIQYVGELCRYLLATPPSPYDRDH- 202

Query: 236 GISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAM 295
               +++ G  L   ++E                             + RE F       
Sbjct: 203 --KVRVAYGNGLRPDIWE-----------------------------RFRERFN------ 225

Query: 296 LSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEAR 355
                 +P  + EF   T G      + +    +G       +        V +  ++  
Sbjct: 226 ------VPE-IGEFYAATEGVFAFTNHNVGPFTAGAIGFSGLIRRWFLENQVFLVKMDPE 278

Query: 356 LESV---PEMGYDALSSVPRGE-------ICLRGNTLFSGYYKRPDLTEEVIV------- 398
            +     P+ G+      P GE       +  +   LF GY K  D TE  ++       
Sbjct: 279 TDMPIRDPKTGF--CVRAPVGEPGEMLGRVRFKNRELFQGYLKNEDATESKLLRDVFRKG 336

Query: 399 DGWFHTGDIGEWQ 411
           D W+ TGD+    
Sbjct: 337 DIWYRTGDLLRQD 349

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 38/155 (24%), Positives = 53/155 (34%), Gaps = 57/155 (36%)

Query: 1   MRSRGVNPGDR-CGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSI 59
           +   GV PGDR  G+     PE ++A+ A       YVPL+   G  A+E+ + H+    
Sbjct: 17  LADLGVKPGDRVAGLLPRT-PELVVAILATWRVGAIYVPLFTAFGPKAIEYRLGHSG--- 72

Query: 60  AFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDC 119
                                    V   N +                       G LD 
Sbjct: 73  -----------------------AKVVVTNAA---------------------NRGKLD- 87

Query: 120 ELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA 154
                   ++   MYTSGTTG PKGV +   A+ A
Sbjct: 88  -------DDLFAQMYTSGTTGLPKGVPVPLNALAA 115

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 8/85 (9%)

Query: 118 DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYF 177
           D  L P +  + + ++ TSG+TG PK VVLT++ I+A      Q+   T      +D   
Sbjct: 158 DAPLHPARPDDPALLLLTSGSTGVPKCVVLTHRNILARSAGTVQVNGFT-----PDDVSL 212

Query: 178 SFLPLAHIYDQIIETH--CIHKGCS 200
           +++PL H+   I+  H   ++ GC 
Sbjct: 213 NWMPLDHV-GGIVMLHLRDVYLGCQ 236

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 43/190 (22%), Positives = 77/190 (40%), Gaps = 21/190 (11%)

Query: 48  VEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS 107
           + +I+NHAE          +P + +  P+C      +  +  ++ +    A    + C+ 
Sbjct: 103 IAYIVNHAEDRYVLFDLTFLPLVDALAPQC----PNVKGWVAMTDAAHLPAGSTPLLCY- 157

Query: 108 WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV----AEVLSVDQMF 163
            E  +     D + P   +   S++ YTSGTTG PKG + ++++ V       L  D M 
Sbjct: 158 -ETLVGAQDGDYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALP-DAM- 214

Query: 164 VVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG---DVRYLMEDIQELKP 220
                  S  D     +P+ H+    +       G  +    G   D + L E I+  + 
Sbjct: 215 -----GLSARDAVLPVVPMFHVNAWGLPYSAPLTGAKLVL-PGPDLDGKSLYELIEAERV 268

Query: 221 TMFSGVPRVY 230
           T  +GVP V+
Sbjct: 269 TFSAGVPTVW 278

Length = 539

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 12/122 (9%)

Query: 292 LQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTT 351
           L+ ++  AAP P  V+  +    G  + + YG TES +  F +  D  +  GTVG     
Sbjct: 273 LRHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTESGAVTFATSEDALSHPGTVGKA--A 330

Query: 352 VEARLESVPEMGYDALSSVPRGEIC-----LRGNTLFSGYYKRPDLTEEVIVDGWFHTGD 406
             A L  V E G      +P+GEI      + GN  F+ Y+ +P+   E+   G+  +GD
Sbjct: 331 PGAELRFVDEDG----RPLPQGEIGEIYSRIAGNPDFT-YHNKPEKRAEIDRGGFITSGD 385

Query: 407 IG 408
           +G
Sbjct: 386 VG 387

Length = 509

>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

 Score = 45.7 bits (109), Expect = 3e-05
 Identities = 29/132 (21%), Positives = 46/132 (34%), Gaps = 27/132 (20%)

Query: 14  IYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSC 73
           ++G   PE +            Y+P+  +  A  +E II  A+ S+    E     IL  
Sbjct: 57  VFGHMSPEMLATFLGAVKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEELPLEILGI 116

Query: 74  LPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIM 133
                     +++   +                  + F      D +   K   N   I 
Sbjct: 117 ---------PVITLDELK-----------------DIFATGNPYDFDHAVKGDDNYYII- 149

Query: 134 YTSGTTGEPKGV 145
           +TSGTTG+PKGV
Sbjct: 150 FTSGTTGKPKGV 161

Length = 503

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 83/321 (25%), Positives = 117/321 (36%), Gaps = 105/321 (32%)

Query: 135 TSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHC 194
           TSG+TG PK V +T+  + A   + + MFV   +   E D   S+LP             
Sbjct: 160 TSGSTGSPKAVQITHGNLYA---NAEAMFVAA-EFDVETDVMVSWLP------------L 203

Query: 195 IHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLF-- 252
            H    +GF              L   M+ G   V          K++    L   L   
Sbjct: 204 FHDMGMVGF--------------LTVPMYFGAELV----------KVTPMDFLRDPLLWA 239

Query: 253 EFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKI--REAFGGR-----LQAMLSGAAPL-PI 304
           E    Y+ G M        AAP     + ++   R+A  G      L+  L+GA P+ P 
Sbjct: 240 ELISKYR-GTMT-------AAPNFAYALLARRLRRQAKPGAFDLSSLRFALNGAEPIDPA 291

Query: 305 HVEEFLRVTSGAP-------LTQGYGLTE-----SCSGCFTSL------ADVFNMIG--- 343
            VE+ L    GA        +   YG+ E     S S C   L      AD+   +    
Sbjct: 292 DVEDLLDA--GARFGLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAV 349

Query: 344 -----------TVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDL 392
                      T+G P+  +E R+  V E G   L     G I LRG ++  GY     L
Sbjct: 350 PATKGNTRRLATLGPPLPGLEVRV--VDEDG-QVLPPRGVGVIELRGESVTPGY-----L 401

Query: 393 TEEVIV-----DGWFHTGDIG 408
           T +  +     DGW  TGD+G
Sbjct: 402 TMDGFIPAQDADGWLDTGDLG 422

Length = 545

>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated

 Score = 45.3 bits (108), Expect = 4e-05
 Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 13/84 (15%)

Query: 111 FLQLGTLD------CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQM-- 162
            +++  LD       +  P+   + + + YTSG+T  P GV+++++ ++A   + +Q+  
Sbjct: 138 VIEVDLLDLDSPRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIA---NFEQLMS 194

Query: 163 --FVVTGKVCSEEDTYFSFLPLAH 184
             F  TG V   + T  S+LP  H
Sbjct: 195 DYFGDTGGVPPPDTTVVSWLPFYH 218

Length = 578

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 11/65 (16%)

Query: 347 VPMTTVEARLES---VPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFH 403
           +P   +E R E+   +PE           G IC+RG +L SGY++  +  + +  DGW  
Sbjct: 391 LPGHEIEIRNEAGMPLPERVV--------GHICVRGPSLMSGYFRDEESQDVLAADGWLD 442

Query: 404 TGDIG 408
           TGD+G
Sbjct: 443 TGDLG 447

Length = 579

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 44.9 bits (107), Expect = 5e-05
 Identities = 38/189 (20%), Positives = 68/189 (35%), Gaps = 23/189 (12%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           +R+ G+  GD   I   N PE+     A     + Y P+   L A  + +I++ +   + 
Sbjct: 28  LRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVL 87

Query: 61  FVQENKIPS---ILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTL 117
            V      +   + + LP     L  +             A  +      +  + +    
Sbjct: 88  IVSAALADTAAELAAELPAGVPLLLVV-------------AGPVP----GFRSYEEALAA 130

Query: 118 DCELPPKKKTNISTIMYTSGTTGEPKGVV--LTNQAIVAEVLSVDQMFVVTGKVCSEEDT 175
             + P   +T  + ++Y+SGTTG PKG+   L       E   +    +  G     +  
Sbjct: 131 QPDTPIADETAGADMLYSSGTTGRPKGIKRPLPGLDP-DEAPGMMLALLGFGMYGGPDSV 189

Query: 176 YFSFLPLAH 184
           Y S  PL H
Sbjct: 190 YLSPAPLYH 198

Length = 502

>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 13/22 (59%), Positives = 18/22 (81%)

Query: 132 IMYTSGTTGEPKGVVLTNQAIV 153
           I++TSG+TG PKGV++   AIV
Sbjct: 603 IIFTSGSTGRPKGVMVGQTAIV 624

Length = 1296

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 44.6 bits (105), Expect = 6e-05
 Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 11/105 (10%)

Query: 314 SGAPLTQGYGLTES-CSG-CFTSLADVFNMI--GTVGVPMTTVEARLESVPEMG-----Y 364
           +G    Q YGL+E+ C+  C  +       I  G VG P   V+  L      G      
Sbjct: 309 TGVRTAQVYGLSETGCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLA--ATDGIGPTAP 366

Query: 365 DALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGE 409
            A  S   G + ++      GY+  P+ T EV++DGW +TGD+ E
Sbjct: 367 GAGPSASFGTLWIKSPANMLGYWNNPERTAEVLIDGWVNTGDLLE 411

Length = 540

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 44.5 bits (106), Expect = 7e-05
 Identities = 17/44 (38%), Positives = 30/44 (68%), Gaps = 9/44 (20%)

Query: 132 IMYTSGTTGEPKGVVLTNQAIVAEVLSV---------DQMFVVT 166
           ++YTSG+TG+PKGV ++++A+V  +LS+         D++  VT
Sbjct: 98  VIYTSGSTGKPKGVEVSHRALVNFLLSMARRPGLGASDRLLAVT 141

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score = 44.5 bits (106), Expect = 7e-05
 Identities = 39/139 (28%), Positives = 57/139 (41%), Gaps = 22/139 (15%)

Query: 292 LQAMLSGAAPLPIHVEEFLR--VTSGAPLTQGYGLTESCSGCFTSLADVF--------NM 341
           L+ ++S  AP+PI V E  R  +   A +   YG TE+         ++         N 
Sbjct: 290 LRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISSIESREILFATRAATDNG 349

Query: 342 IGT-VGVPMTTVEARLESVPEMGYDALSSVPR------GEICLRGNTLFSGYYKRPDLTE 394
            G  VG P+  VE R+ ++ +          R      GEI + G  +   YY RP+ T 
Sbjct: 350 AGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATR 409

Query: 395 EV-IVDG----WFHTGDIG 408
              I DG    W   GD+G
Sbjct: 410 LAKIPDGQGDVWHRMGDLG 428

Length = 552

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 44.1 bits (105), Expect = 9e-05
 Identities = 20/66 (30%), Positives = 30/66 (45%)

Query: 2  RSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAF 61
           + GV PGDR  +   NCPE++ A  A N      VP+   L    +  I++H+   +  
Sbjct: 21 LALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTALRGEELAHILDHSGARLIV 80

Query: 62 VQENKI 67
          V    I
Sbjct: 81 VDTAAI 86

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 44.2 bits (105), Expect = 9e-05
 Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 22/95 (23%)

Query: 315 GAPLTQGYGLTESCSGCFTSL-ADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRG 373
           G P+ +GYGL+E  S    SL     +  G+VG P+  V+  +                G
Sbjct: 261 GLPVYEGYGLSECAS--VVSLNTPGADRPGSVGKPLPHVQVSIA-------------NDG 305

Query: 374 EICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIG 408
           EI +RG+ L  GY     L E    D W+ TGD+G
Sbjct: 306 EILVRGS-LMLGY-----LGEPPATDDWWATGDLG 334

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 39/156 (25%), Positives = 59/156 (37%), Gaps = 24/156 (15%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWI-----IAMEACNSQAITYVPLYDTLGANAVEFIINHA 55
           +  RG+  GD   +   N P  +     + M       +        L A ++ F++ H 
Sbjct: 60  LARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVLNTLNT-----RLDAASIAFMLRHG 114

Query: 56  EVSIAFVQENKIPSI---LSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFL 112
           E  +  V           L+ LP      K +V   +V   +      +G     +E FL
Sbjct: 115 EAKVLIVDTEFAEVAREALALLPG----PKPLV--IDVDDPEYPGGRFIGA--LDYEAFL 166

Query: 113 QLG--TLDCELPPKKKTNISTIMYTSGTTGEPKGVV 146
             G       LP  +   I+ + YTSGTTG PKGVV
Sbjct: 167 ASGDPDFAWTLPADEWDAIA-LNYTSGTTGNPKGVV 201

Length = 545

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 44.1 bits (105), Expect = 1e-04
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 5/52 (9%)

Query: 132 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA 183
           ++YTSG+TG+PKGVV+T++ I   + +   +  +        D    F  +A
Sbjct: 104 VIYTSGSTGKPKGVVITHRNICNFLRAEGAILGIR-----PGDRVLQFASIA 150

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 43.7 bits (104), Expect = 1e-04
 Identities = 25/109 (22%), Positives = 43/109 (39%), Gaps = 21/109 (19%)

Query: 318 LTQGYGLTESCSGCFTSLADVFN-MIGTVGVPMTTVEARL---ESVPEMGYDALSSVPRG 373
           L   YG TE+      + + +       +G P+      +   +  P +   A+     G
Sbjct: 234 LLNTYGPTEATVTA--TASRLTPGKPVNIGRPLPNYTCWVLDPDLEPLVPIGAV-----G 286

Query: 374 EICLRGNTLFSGYYKRPDLTEEV-IVDGW---------FHTGDIGEWQP 412
           E+C+ G  +  GY  RP+LT E  I D +         + TGD+  +  
Sbjct: 287 ELCIGGPGVARGYLNRPELTAEKFIPDPFWLNNPGGRIYRTGDLVRYLE 335

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 23/72 (31%), Positives = 31/72 (43%)

Query: 1  MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
          +R  GV  GDR G+Y    PE  IA  A        VPL    G +AVE  +  +   + 
Sbjct: 23 LRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPLSVLFGPDAVEHRLRDSGARVL 82

Query: 61 FVQENKIPSILS 72
              +  P+IL 
Sbjct: 83 VTDGSDDPAILI 94

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 7/65 (10%)

Query: 121 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKV-CSEEDTYFSF 179
              +   + + I++TSG+ G PKGVVL+++ ++A          V  ++  S ED  F+ 
Sbjct: 787 FCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLA------NRAQVAARIDFSPEDKVFNA 840

Query: 180 LPLAH 184
           LP+ H
Sbjct: 841 LPVFH 845

Length = 1140

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 44/185 (23%), Positives = 76/185 (41%), Gaps = 37/185 (20%)

Query: 1    MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
            +R+RGV P  R  I      E ++A+ A       YVPL D           N+    +A
Sbjct: 2045 LRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYVPL-D----------PNYPAERLA 2093

Query: 61   FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL----GVSCFSWEEFLQLGT 116
            ++ E+                    S A +  +Q+   E L    GV+    +   +   
Sbjct: 2094 YMLED--------------------SGAALLLTQRHLLERLPLPAGVARLPLDRDAEWAD 2133

Query: 117  LDCELPPKK--KTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEED 174
                 P  +    N++ ++YTSG+TG PKGV +++ A+VA   +  + + ++   C  + 
Sbjct: 2134 YPDTAPAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERYELSPADCELQF 2193

Query: 175  TYFSF 179
              FSF
Sbjct: 2194 MSFSF 2198

Length = 5163

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 36/167 (21%), Positives = 63/167 (37%), Gaps = 32/167 (19%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           +  RGV P    G+      E ++A+ A       YVPL     A  + +++  + V + 
Sbjct: 553 LIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPLDPEYPAERLAYMLEDSGVQLL 612

Query: 61  FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF----SWEEFLQLGT 116
             Q +        LP                      A  + V       +W E      
Sbjct: 613 LSQSHLGRK----LPL---------------------AAGVQVLDLDRPAAWLEGYSEEN 647

Query: 117 LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF 163
              EL P+   N++ ++YTSG+TG+PKG    ++A+   +  + Q +
Sbjct: 648 PGTELNPE---NLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAY 691

Length = 5163

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 8/128 (6%)

Query: 290 GRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM-IGTVGVP 348
            +L+   S   PL   V  + +   G  +   YG TE+        A    +  G++G+P
Sbjct: 205 LKLRVASSAGEPLNPEVVRWFQANLGVTIHDHYGQTETGMPVGNHHALAHEVRAGSMGLP 264

Query: 349 MTTVEARLESVPEMGYDALSSVPRGEICLRGNT----LFSGYYKRPDLTEEVIVDGWFHT 404
           +        +V +     L+    G++ +   +     FSGY+  P+ T E+I   W+ T
Sbjct: 265 LPGYRI---AVLDDDGQPLADGEPGQLAIDVASSPLLWFSGYWDDPEKTAELIAGRWYVT 321

Query: 405 GDIGEWQP 412
           GD+ E   
Sbjct: 322 GDLVERDE 329

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score = 43.3 bits (103), Expect = 2e-04
 Identities = 35/159 (22%), Positives = 67/159 (42%), Gaps = 21/159 (13%)

Query: 1   MRSRGVNPGDRCGIYGSNCPE-WIIAMEACNSQAITYVPLYDTLGANAVEFIINHAE--- 56
           ++  GV  GDR  I+    PE +   + A  + AI   PL++     AV   +  +E   
Sbjct: 90  LKELGVEKGDRVFIFMPRIPELYFALLGALKNGAI-VGPLFEAFMEEAVRDRLEDSEAKV 148

Query: 57  -VSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLG 115
            ++   + E K    L  L       K ++           E  E G     +   ++  
Sbjct: 149 LITTPALLERKPADDLPSL-------KHVLLVG--------EDVEEGPGTLDFNALMEQA 193

Query: 116 TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA 154
           + + ++    + + + + YTSG+TG+PKGV+  + A++ 
Sbjct: 194 SDEFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQ 232

Length = 570

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 373 GEIC-LRGNTLFSGYYKRPDLTEEVIVDGWFHTGDI 407
           GE+    G   F GYY  P+   E +  G + +GD+
Sbjct: 353 GELVNTAGPGGFEGYYNDPEADAERMRGGVYWSGDL 388

Length = 529

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 5/97 (5%)

Query: 317 PLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEIC 376
                YG TE+ +  +          GT   P    E R+  +     +AL +   GE+ 
Sbjct: 296 EKVNIYGTTEAMNSLYMRDPRT----GTEMRPGFFSEVRIVRIGGSPDEALPNGEEGELV 351

Query: 377 L-RGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQP 412
           +   +  F+GY  +P  T E + DGW+ T D+    P
Sbjct: 352 VAAADATFTGYLNQPQATAEKLQDGWYRTSDVAVVDP 388

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 65/307 (21%), Positives = 104/307 (33%), Gaps = 81/307 (26%)

Query: 128  NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFS--------F 179
            N++ ++YTSG+TG PKG    + A+V  + +  + + ++      + T F+        F
Sbjct: 1719 NLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAYQLSAADVVLQFTSFAFDVSVWELF 1778

Query: 180  LPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISN 239
             PL +    +I     H+         D   L++ I+  + T    VP +          
Sbjct: 1779 WPLINGARLVIAPPGAHR---------DPEQLIQLIERQQVTTLHFVPSML--------- 1820

Query: 240  KISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGA 299
                     ++L +               Q +    L  +V                 G 
Sbjct: 1821 ---------QQLLQMD------------EQVEHPLSLRRVVCG---------------GE 1844

Query: 300  APLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESV 359
            A     +  +L       L   YG TE+            ++ G   VP+    A L   
Sbjct: 1845 ALEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWTCRRKDLEGRDSVPIGQPIANLS-- 1902

Query: 360  PEMGY--DA-LSSVPR---GEICLRGNTLFSGYYKRPDLTEEVIVDGWF--------HTG 405
                Y  DA L+ VP    GE+ L G  L  GY  RP LT E  V   F         TG
Sbjct: 1903 ---TYILDASLNPVPIGVAGELYLGGVGLARGYLNRPALTAERFVADPFGTVGSRLYRTG 1959

Query: 406  DIGEWQP 412
            D+  ++ 
Sbjct: 1960 DLARYRA 1966

Length = 3956

>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 13/89 (14%)

Query: 120 ELPPKKKTNISTIM------YTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEE 173
           E  P    +  +I       YTSGTTG PK   +++      VL    M  + G   + +
Sbjct: 129 EPVPASLRSGVSIRSTALYIYTSGTTGLPKAARISHL----RVLQCSGMLSLCG--VTAD 182

Query: 174 DTYFSFLPLAHIYDQIIETH-CIHKGCSI 201
           D  ++ LPL H    ++    CI  G ++
Sbjct: 183 DVVYTTLPLYHSSGALLGIVGCIGLGATL 211

Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 7/55 (12%)

Query: 132 IMYTSGTTGEPKGVVLTN-QAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI 185
           I+YTSGTTG  KGV   + Q       S + + +        +D  ++ LPL H 
Sbjct: 185 ILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIG------ADDVLYTTLPLFHT 233

Length = 542

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 45/192 (23%), Positives = 75/192 (39%), Gaps = 26/192 (13%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIIN--HAEVS 58
           + ++G+ PGDR         E+ I   AC       VPL  +     + +++N   A++ 
Sbjct: 66  LLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKMF 125

Query: 59  IA---FVQENKIPSILSC---LPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFL 112
            A   F Q   +  IL     LP     L+ IV          K A     S  S  + +
Sbjct: 126 FAPTLFKQTRPVDLILPLQNQLP----QLQQIVGV-------DKLAPAT--SSLSLSQII 172

Query: 113 QLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSE 172
                           ++ +++TSGT G PKGV+LT+  I+A     ++ +     +   
Sbjct: 173 ADYEPLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILAS----ERAYCARLNLTW- 227

Query: 173 EDTYFSFLPLAH 184
           +D +    PL H
Sbjct: 228 QDVFMMPAPLGH 239

Length = 547

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 41.4 bits (98), Expect = 6e-04
 Identities = 10/23 (43%), Positives = 19/23 (82%)

Query: 132 IMYTSGTTGEPKGVVLTNQAIVA 154
           I++TSG+TG+PKGV +++  + +
Sbjct: 102 ILFTSGSTGKPKGVQISHANLAS 124

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 41.8 bits (98), Expect = 6e-04
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 7/68 (10%)

Query: 120 ELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVT--GKVCSEEDTYF 177
           E PP++    + + YTSGTTG PKG V+  +A  + VL     F+ T  G      +   
Sbjct: 145 EDPPREPEQPAFVFYTSGTTGLPKGAVIPQRAAESRVL-----FMSTQAGLRHGRHNVVL 199

Query: 178 SFLPLAHI 185
             +PL H+
Sbjct: 200 GLMPLYHV 207

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 41.4 bits (97), Expect = 7e-04
 Identities = 33/149 (22%), Positives = 57/149 (38%), Gaps = 23/149 (15%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           + +RG+  GD   +   N   ++    A +     ++P+   L A+ V +I+  A   + 
Sbjct: 44  LHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLPINYRLAADEVAYILGDAGAKLL 103

Query: 61  FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDC- 119
            V E         +    L    IV  A   +  ++               L  G L+  
Sbjct: 104 LVDEE-----FDAIV--ALETPKIVIDAAAQADSRR---------------LAQGGLEIP 141

Query: 120 ELPPKKKTNISTIMYTSGTTGEPKGVVLT 148
                  T++  +MYTSGTT  PKGV+ +
Sbjct: 142 PQAAVAPTDLVRLMYTSGTTDRPKGVMHS 170

Length = 497

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 36/138 (26%), Positives = 56/138 (40%), Gaps = 21/138 (15%)

Query: 292 LQAMLSGAAPLPIHV-EEFLRVTS-GAPLTQGYGLTESCSGCFTSLADVFNMIGT----- 344
           L+ +LS  AP+P  +   F+      A +   YG TE+         +V           
Sbjct: 201 LRRVLSAGAPVPPDLLRRFVANLMPEAEIHTPYGATEALPVASIEGREVLAESAEPPEAG 260

Query: 345 ----VGVPMTTVEAR---LESVPEMGYDALSSVPR---GEICLRGNTLFSGYYKRPDLTE 394
               VG P+  ++ R   ++  P   +D    +P    GEI + G  +   YY RP+ T+
Sbjct: 261 AGVCVGHPVPGIDVRIIPIDDGPIASWDDDIELPPGEVGEIIVSGPHVTREYYNRPEATK 320

Query: 395 -EVIVDG---WFHTGDIG 408
              I DG   W   GD+G
Sbjct: 321 LAKISDGNRIWHRMGDLG 338

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 41.5 bits (98), Expect = 7e-04
 Identities = 30/110 (27%), Positives = 43/110 (39%), Gaps = 25/110 (22%)

Query: 321 GYGLTESCSGCFTSLADVFNMIGTVGV----PMTTVEARLESVPEMGYDA---LSSVPRG 373
            YG TE          ++FN  G VG      +  V+  +E+  E   DA      VP G
Sbjct: 226 FYGSTE----GNVGFINLFNKPGAVGRLPPAAIAVVKYDVET-EEPIRDANGFCIKVPPG 280

Query: 374 EICL---RGNTL--FSGYYKRPDLTEEVIV-------DGWFHTGDIGEWQ 411
           E+ L          F GY    + TE+ I+       D +F+TGD+    
Sbjct: 281 EVGLLLGEITDRNPFDGYT-DDEATEKKILRDVFKKGDAYFNTGDLVRRD 329

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 41.5 bits (98), Expect = 7e-04
 Identities = 13/17 (76%), Positives = 15/17 (88%)

Query: 132 IMYTSGTTGEPKGVVLT 148
           I+YTSGTTG+PKG V T
Sbjct: 105 IIYTSGTTGKPKGTVHT 121

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 41.2 bits (97), Expect = 9e-04
 Identities = 38/169 (22%), Positives = 61/169 (36%), Gaps = 29/169 (17%)

Query: 18  NCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRC 77
           N PE+ + + A     I  V L  T    A+   I HA+  +   +      +    P  
Sbjct: 63  NTPEFSLLLGAAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLDPG- 121

Query: 78  CLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIM--YT 135
                  V   NV S               W + L     D E P +        M  +T
Sbjct: 122 -------VRVINVDSPA-------------WADELA-AHRDAEPPFRVADPDDLFMLIFT 160

Query: 136 SGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH 184
           SGT+G+PK V  T++ + +  + + Q F +       +D  +  +PL H
Sbjct: 161 SGTSGDPKAVRCTHRKVASAGVMLAQRFGL-----GPDDVCYVSMPLFH 204

Length = 529

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score = 40.7 bits (96), Expect = 0.001
 Identities = 13/59 (22%), Positives = 27/59 (45%)

Query: 3  SRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAF 61
          + G+ PGDR  +      E+++   A        VPL  +  A  + +I++ ++ S+  
Sbjct: 30 ALGLLPGDRVAVLAPKSAEYVVLYLAIWRAGGVAVPLNPSYPAAELAYILSDSQPSLLV 88

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 17/59 (28%), Positives = 27/59 (45%)

Query: 4  RGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFV 62
          +GV  GDR  +Y  N P+++IA  A        VP+        +E I+N +   +  V
Sbjct: 21 KGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMNREAELEHILNDSGARVLIV 79

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 35/128 (27%), Positives = 48/128 (37%), Gaps = 21/128 (16%)

Query: 291 RLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM------IGT 344
           RL+  +S   PL   V E ++   G  +  GYG TE+        A + N        G+
Sbjct: 200 RLREAVSAGEPLNPEVIERVKKAWGLTIRDGYGQTETT-------AMIGNSPGQKVKPGS 252

Query: 345 VGVPMTTVEARLESVPEMGYDALSSVPRGEICL----RGNTLFSGYYKRPDLTEEVIVDG 400
           +G P+      L    E        V  GEI L    R   L  GY   P+ T      G
Sbjct: 253 MGRPLPGYRVVLLD-DE---GKEIPVTEGEIALDLGDRPIGLMLGYMGDPEKTAAAFRGG 308

Query: 401 WFHTGDIG 408
           ++ TGD  
Sbjct: 309 YYRTGDKA 316

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 9/81 (11%)

Query: 110 EFLQLGTLDCEL------PPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF 163
           E L + TLD  L      P  +  +I+ + YTSG+T  PKGV +++  +VA    +   F
Sbjct: 143 ELLCVDTLDPALAEAWQEPALQPDDIAFLQYTSGSTALPKGVQVSHGNLVANEQLIRHGF 202

Query: 164 VVTGKVCSEEDTYFSFLPLAH 184
              G   + +D   S+LPL H
Sbjct: 203 ---GIDLNPDDVIVSWLPLYH 220

Length = 4334

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 5/57 (8%)

Query: 128 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH 184
           +++ ++YTSGTTGEPKGV+ T   ++A ++   +   +       +D      P+AH
Sbjct: 198 DVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGA-----DDVILMASPMAH 249

Length = 547

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 128 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH 184
           +++ ++YTSGTTGEPKGV+ T   + + +    +   +        D      P+AH
Sbjct: 196 DVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLEL-----GGGDVILMASPMAH 247

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 17/58 (29%), Positives = 30/58 (51%)

Query: 2  RSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSI 59
          R+ GV PGDR G+      + + A+ A       YVPL  +  A  +++++  AE ++
Sbjct: 30 RALGVGPGDRVGVLLERSADLVAALLAILKAGAAYVPLDPSYPAERLQYMLEDAEPAL 87

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 373 GEIC-LRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIG 408
           GE+    G   F GYY  P+ T E +  G + +GD+ 
Sbjct: 352 GELVNTAGAGFFEGYYNNPEATAERMRHGMYWSGDLA 388

Length = 540

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 39.8 bits (94), Expect = 0.002
 Identities = 12/15 (80%), Positives = 15/15 (100%)

Query: 132 IMYTSGTTGEPKGVV 146
           I+YTSG+TG+PKGVV
Sbjct: 230 ILYTSGSTGKPKGVV 244

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 17/58 (29%)

Query: 134 YTSGTTGEPKGVVLTNQAIVAEVLSVDQM-FVVTGKVC------SEEDTYFSFLPLAH 184
           +TSGTTG PK  VLT+           QM FV+T  +       +E+D      PL+H
Sbjct: 170 FTSGTTGRPKAAVLTH----------GQMAFVITNHLADLMPGTTEQDASLVVAPLSH 217

Length = 528

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 12/56 (21%), Positives = 21/56 (37%)

Query: 1  MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAE 56
          ++  GV  GDR  +     PE    +  C      ++P    LG   + + +  A 
Sbjct: 17 LKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLGPKDIRYRLERAG 72

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase

 Score = 39.5 bits (92), Expect = 0.003
 Identities = 40/166 (24%), Positives = 64/166 (38%), Gaps = 11/166 (6%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           +R+ GV PGDR   Y  N P+ ++AM A  S    +       GA  V       E  + 
Sbjct: 131 LRALGVRPGDRVSGYLPNIPQAVVAMLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLL 190

Query: 61  FVQE-----NKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV-SCFSWEEFL-- 112
           F  +      K       +      L T+ +  ++     +E E   +      E+F   
Sbjct: 191 FTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLGPRETEAPKIDGALDLEDFTAA 250

Query: 113 -QLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVL 157
            Q   L  E  P    +   I+++SGTTG PK +V +    + + L
Sbjct: 251 AQAAELVFEQLP--FDHPLWILFSSGTTGLPKCIVHSAGGTLVQHL 294

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 12/60 (20%)

Query: 365 DALSSVPR---GEICLRGNTLFSGYYKRPDLTEE-VIVDGW--------FHTGDIGEWQP 412
             L  VP    GE+ + G  +  GY  RP+LT E  + + +        + TGD+   + 
Sbjct: 284 AHLQPVPVGVPGELYIGGAGVARGYLGRPELTAERFLPNPFAGSPGERLYRTGDLVRRRA 343

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 38.7 bits (91), Expect = 0.004
 Identities = 29/122 (23%), Positives = 46/122 (37%), Gaps = 13/122 (10%)

Query: 292 LQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTT 351
           L+  +  AAP P+ V+  +    G  + + Y  +E       +  D     G+VG     
Sbjct: 264 LRVAIHAAAPCPVEVKRAMIDWWGPIIHEYYASSEGGGVTVITSEDWLAHPGSVGKA--- 320

Query: 352 VEARLESVPEMGYDALSSVPRGEICL----RGNTLFSGYYKRPDLTEEVIVD-GWFHTGD 406
           V   +  + E G    + +P GEI           F  Y+  P+ T       GW   GD
Sbjct: 321 VLGEVRILDEDG----NELPPGEIGTVYFEMDGYPFE-YHNDPEKTAAARNPHGWVTVGD 375

Query: 407 IG 408
           +G
Sbjct: 376 VG 377

Length = 502

>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional

 Score = 39.2 bits (92), Expect = 0.004
 Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 6/53 (11%)

Query: 127 TNISTIMYTSGTTGEPKGVVL-TNQAIVAEVLSVDQMFVVTGKVCSEEDTYFS 178
              S I+YTSGTTG+PKGV   T    VA   S+D +F   GK     +T+F 
Sbjct: 233 NEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIF--GGK---AGETFFC 280

Length = 629

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 39.0 bits (91), Expect = 0.004
 Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 20/141 (14%)

Query: 50  FIINHAEVSIAFVQENKIP---SILSCLPRCCLYLKTIVSF---ANVSSSQKKEAEELGV 103
           +IINHAE  +       +P    I   LP     ++  V     A++  +  K A     
Sbjct: 105 WIINHAEDRVVITDLTFVPILEKIADKLPS----VERYVVLTDAAHMPQTTLKNA----- 155

Query: 104 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF 163
              ++EE++     D       +   + + YTSGTTG+PKGV+ ++++ V   L  +   
Sbjct: 156 --VAYEEWIAEADGDFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGD 213

Query: 164 VVTGKVCSEEDTYFSFLPLAH 184
            + G   +  DT    +PL H
Sbjct: 214 AL-GTSAA--DTMLPVVPLFH 231

Length = 542

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	415
KOG1256	691	consensus Long-chain acyl-CoA synthetases (AMP-for	100.0
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	100.0
PLN02614	666	long-chain acyl-CoA synthetase	100.0
PLN02861	660	long-chain-fatty-acid-CoA ligase	100.0
PTZ00342	746	acyl-CoA synthetase; Provisional	100.0
PLN02430	660	long-chain-fatty-acid-CoA ligase	100.0
PLN02736	651	long-chain acyl-CoA synthetase	100.0
KOG1180	678	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	100.0
KOG1176	537	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PTZ00216	700	acyl-CoA synthetase; Provisional	100.0
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
PTZ00237	647	acetyl-CoA synthetase; Provisional	100.0
PLN02654	666	acetate-CoA ligase	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	100.0
PRK04319	570	acetyl-CoA synthetase; Provisional	100.0
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	100.0
PRK08180	614	feruloyl-CoA synthase; Reviewed	100.0
PRK07529	632	AMP-binding domain protein; Validated	100.0
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
PRK07788	549	acyl-CoA synthetase; Validated	100.0
PLN02574	560	4-coumarate--CoA ligase-like	100.0
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	100.0
PRK00174	637	acetyl-CoA synthetase; Provisional	100.0
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
PRK12582	624	acyl-CoA synthetase; Provisional	100.0
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK09274	552	peptide synthase; Provisional	100.0
PRK13382	537	acyl-CoA synthetase; Provisional	100.0
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN02246	537	4-coumarate--CoA ligase	100.0
PRK05857	540	acyl-CoA synthetase; Validated	100.0
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	100.0
PRK07638	487	acyl-CoA synthetase; Validated	100.0
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	100.0
PRK06060	705	acyl-CoA synthetase; Validated	100.0
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	100.0
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06839	496	acyl-CoA synthetase; Validated	100.0
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	100.0
PRK08316	523	acyl-CoA synthetase; Validated	100.0
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	100.0
PRK07514	504	malonyl-CoA synthase; Validated	100.0
PLN02330	546	4-coumarate--CoA ligase-like 1	100.0
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	100.0
PRK05852	534	acyl-CoA synthetase; Validated	100.0
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	100.0
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	100.0
PRK10946	536	entE enterobactin synthase subunit E; Provisional	100.0
PLN03051	499	acyl-activating enzyme; Provisional	100.0
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	100.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
PLN03102	579	acyl-activating enzyme; Provisional	100.0
PRK07470	528	acyl-CoA synthetase; Validated	100.0
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	100.0
PLN03052	728	acetate--CoA ligase; Provisional	100.0
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	100.0
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	100.0
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07787	471	acyl-CoA synthetase; Validated	100.0
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	100.0
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	100.0
PRK09088	488	acyl-CoA synthetase; Validated	100.0
PRK06145	497	acyl-CoA synthetase; Validated	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK06188	524	acyl-CoA synthetase; Validated	100.0
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	100.0
PRK08315	559	AMP-binding domain protein; Validated	100.0
PRK06164	540	acyl-CoA synthetase; Validated	100.0
PLN02479	567	acetate-CoA ligase	100.0
PRK13388	540	acyl-CoA synthetase; Provisional	100.0
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	100.0
PRK12583	558	acyl-CoA synthetase; Provisional	100.0
PRK13383	516	acyl-CoA synthetase; Provisional	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK06018	542	putative acyl-CoA synthetase; Provisional	100.0
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK07867	529	acyl-CoA synthetase; Validated	100.0
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK06178	567	acyl-CoA synthetase; Validated	100.0
PRK13390	501	acyl-CoA synthetase; Provisional	100.0
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	100.0
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	100.0
PRK13391	511	acyl-CoA synthetase; Provisional	100.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	100.0
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	100.0
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK08162	545	acyl-CoA synthetase; Validated	100.0
PRK09192	579	acyl-CoA synthetase; Validated	100.0
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	100.0
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
PRK05850	578	acyl-CoA synthetase; Validated	100.0
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	100.0
KOG1175	626	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK07798	533	acyl-CoA synthetase; Validated	100.0
PTZ00297	1452	pantothenate kinase; Provisional	100.0
PRK08308	414	acyl-CoA synthetase; Validated	100.0
PRK07868	994	acyl-CoA synthetase; Validated	100.0
KOG1179	649	consensus Very long-chain acyl-CoA synthetase/fatt	100.0
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	100.0
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	99.97
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.94
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	99.91
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.89
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.86
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	99.86
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.77
KOG1178	1032	consensus Non-ribosomal peptide synthetase/alpha-a	99.61
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.51
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	99.38
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	98.6
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	97.01
PRK09188	365	serine/threonine protein kinase; Provisional	95.91
PLN02249	597	indole-3-acetic acid-amido synthetase	95.85
PLN02247	606	indole-3-acetic acid-amido synthetase	95.54
PLN02620	612	indole-3-acetic acid-amido synthetase	95.09

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]

Probab=100.00  E-value=4.6e-68  Score=496.08  Aligned_cols=411  Identities=45%  Similarity=0.804  Sum_probs=364.8

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEc-CCChhhhhhcCcc-CC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQ-ENKIPSILSCLPR-CC   78 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~-~~~~~~~~~~~~~-~~   78 (415)
                      |++.|+++++.|+|+..|++||+++.+||...|.+.+||..++++++++++++.+.+.++|+| ++....+.+.... ..
T Consensus       125 l~~lG~~~~~~VGIy~~N~pEWiis~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~  204 (691)
T KOG1256|consen  125 LRKLGVKEDSKVGIYAFNRPEWIISEMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSL  204 (691)
T ss_pred             HHHhCCCCCceEEEeccCChhhHHhHHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccC
Confidence            457899999999999999999999999999999999999999999999999999999999999 5556667666554 35


Q ss_pred             CCccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCC-CCCCC-CCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHh
Q 014951           79 LYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT-LDCEL-PPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEV  156 (415)
Q Consensus        79 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~  156 (415)
                      +.++.++.++.............+..+.+|+++...+. ..... .++.++|.|.|.|||||||.||||++||+|+...+
T Consensus       205 ~~LK~iI~~~~~~~~~~~~~~~~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v  284 (691)
T KOG1256|consen  205 PSLKAIIQLDEPSDELKEKAENNGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDV  284 (691)
T ss_pred             ccceeEEEecCCchhhhhhhhcCCeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehh
Confidence            78999999999988888888888899999999998883 33333 47899999999999999999999999999999966


Q ss_pred             hhhhhhhhh-ccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCCCHHHHHHHHHhhCCeEEEeCcHHHHHHHH
Q 014951          157 LSVDQMFVV-TGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYT  235 (415)
Q Consensus       157 ~~~~~~~~~-~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~  235 (415)
                      ......... ........|++++++|++|++..+.-...++.|+.+.+.++|+..+.+.+++.+||.+.++|.+|+++.+
T Consensus       285 ~~~~~~~~~~~~~~~~~~dv~lSyLPLAHi~er~~~~~~~~~G~~IgF~~gD~~~l~~dlk~lkPT~f~~VPRVl~riye  364 (691)
T KOG1256|consen  285 AGIFFLSAAENAKATVGDDVYLSYLPLAHIFERVVELYTFYIGAKIGFARGDILKLTDDLKELKPTVFPGVPRVLERIYE  364 (691)
T ss_pred             hhhhhhhhcccccccccCceEEEeCcHHHHHHHHHHHhHhhcccEEEEecCChHHHHHHHHHhCCcEEeccHhHHHHHHH
Confidence            543222111 1123334799999999999999998777789999999999999999999999999999999999999999


Q ss_pred             HHHHhhhcCChhhHHHHHHHHHhhh-hccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhc
Q 014951          236 GISNKISSGGALSKKLFEFAYNYKL-GNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS  314 (415)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~  314 (415)
                      .+.++..+.+.+.+++|++|...+. ..+..+.... ....++++.+++++..+|.++|.+++|++|+++++.++++..+
T Consensus       365 ~I~~~~~~sgflkr~l~~~A~~~k~~~~~~~G~~~~-~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~  443 (691)
T KOG1256|consen  365 GIQKQVQKSGFLKRKLFNFAMAYKLEHRLMKGKSRS-RDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAAL  443 (691)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHHHHHHhhCCCCcc-cchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhc
Confidence            9999999999999999999999998 5566665544 7889999999999999999999999999999999999999999


Q ss_pred             CCceEEeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhhh
Q 014951          315 GAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTE  394 (415)
Q Consensus       315 ~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~  394 (415)
                      +++|+++||+||+++.++...++.. ..+++|.|+|++++|++|++|.+..+.+  ..|||||+|+++++|||+||++|+
T Consensus       444 g~~v~eGYGlTEts~g~~~~~~~d~-~lgsvG~p~p~~~vKL~dvpe~ny~a~~--~~GEIcirG~~Vf~GYyK~p~~T~  520 (691)
T KOG1256|consen  444 GCRVLEGYGLTETSAGTTLTLPGDN-VLGSVGPPVPGNEVKLVDVPEMNYDADG--SKGEICVRGPNVFMGYYKDPEKTA  520 (691)
T ss_pred             CceeeecccccccCCceEeccCCCC-CCCCcCCcccCceEEEechHHhCcCcCC--CcceEEEecchhceeccCChHHHh
Confidence            9999999999999977776666555 5599999999999999998888877765  589999999999999999999999


Q ss_pred             hhh-cCCceecCceEEEcCCCC
Q 014951          395 EVI-VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       395 ~~~-~~g~~~TGDlg~~d~~G~  415 (415)
                      +++ .|||++|||+|++|++|.
T Consensus       521 e~ideDGWLhTGDiG~~~p~G~  542 (691)
T KOG1256|consen  521 EAIDEDGWLHTGDIGEWDPNGT  542 (691)
T ss_pred             hhhccccccccccceeECCCcc
Confidence            999 899999999999999995

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=100.00  E-value=4.2e-64  Score=476.53  Aligned_cols=393  Identities=34%  Similarity=0.624  Sum_probs=311.6

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |++.|+++||+|+|++.|+++|+++.+||+.+|++.||+.+..+++++.++|+.++++++|++..............++.
T Consensus        62 L~~lg~~~gdrvai~a~nr~eW~i~d~a~~~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~  141 (613)
T COG1022          62 LLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPK  141 (613)
T ss_pred             HHhcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccc
Confidence            46789977999999999999999999999999999999999999999999999999999999986554433322221111


Q ss_pred             ccEEEEec----CCCchhhHHhhh-cCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHH
Q 014951           81 LKTIVSFA----NVSSSQKKEAEE-LGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAE  155 (415)
Q Consensus        81 ~~~v~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~  155 (415)
                      ........    ............ .......+  ............+..++|+|.|+|||||||.||||++||+|++++
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~  219 (613)
T COG1022         142 VVDLIVIIDLVREAVEAKALVLEVFPDEGISLF--LIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQ  219 (613)
T ss_pred             hhhhhhhhhhhhhccchhhccccccccccchhh--hhcccccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHH
Confidence            11111000    000000000000 00001111  111111122225678999999999999999999999999999999


Q ss_pred             hhhhhhhhhhcccc-CCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCCCHHHHHHHHHhhCCeEEEeCcHHHHHHH
Q 014951          156 VLSVDQMFVVTGKV-CSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIY  234 (415)
Q Consensus       156 ~~~~~~~~~~~~~~-~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~  234 (415)
                      +......+     . ..++|++++++|+.|++...+.+.....++..++...++..++..+++++||.+.++|.+|+.+.
T Consensus       220 v~~~~~~~-----~~~~~~d~~LsfLPlaHi~Er~~~~~~~~~~g~~~~~~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~  294 (613)
T COG1022         220 VAGIDEVL-----PPIGPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLFKEDPRTLLEDLKEVRPTVMIGVPRVWEKVY  294 (613)
T ss_pred             HHHHHhhC-----CCCCCCcEEEEeCcHHHHHHHHHHHHHHhhcceEEEecCCHHHHHHHHHHhCCeEEeechHHHHHHH
Confidence            99988776     4 78999999999999999998744433444444445559999999999999999999999999999


Q ss_pred             HHHHHhhhcCChhhHHHHHHHHHhhhhccccCCC---CCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHH
Q 014951          235 TGISNKISSGGALSKKLFEFAYNYKLGNMKKGMP---QNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLR  311 (415)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~  311 (415)
                      +.+..++.+.+...+++|++++......+.....   ........+++.++++|+.+|.++|++++||+++++++..+++
T Consensus       295 ~~I~~kv~~~~~~~~~if~~a~~~~~~~~~~~~~~~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~  374 (613)
T COG1022         295 KGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFR  374 (613)
T ss_pred             HHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhcccCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHH
Confidence            9999999999999999999999776433222111   1111123788999999999999999999999999999999999


Q ss_pred             HhcCCceEEeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCch
Q 014951          312 VTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPD  391 (415)
Q Consensus       312 ~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~  391 (415)
                      . .|++++++||+||+++..+.+++..... +++|.|+|++++||+|             .|||+||||+||+|||++|+
T Consensus       375 ~-lGi~i~eGYGlTEts~~~~v~~~~~~~~-gtvG~p~p~~evKI~d-------------~GEilVRG~~Vm~GYyk~pe  439 (613)
T COG1022         375 S-LGIPILEGYGLTETSAVVSVNPPDRFVL-GTVGKPLPGIEVKIAD-------------DGEILVRGPNVMKGYYKNPE  439 (613)
T ss_pred             H-cCCCeEEEecccccccceEEccccCccc-CCcCCcCCCceEEEcc-------------CceEEEecchhcchhcCChH
Confidence            5 6899999999999999998887776666 9999999999999998             59999999999999999999


Q ss_pred             hhhhhh-cCCceecCceEEEcCCCC
Q 014951          392 LTEEVI-VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       392 ~~~~~~-~~g~~~TGDlg~~d~~G~  415 (415)
                      +|.++| .||||+|||+|.+|++|+
T Consensus       440 ~Taeaf~~DGWf~TGDlg~~d~~g~  464 (613)
T COG1022         440 ATAEAFTEDGWFRTGDLGELDEDGY  464 (613)
T ss_pred             HHhhhccccCCcccCceeEEcCCCc
Confidence            999999 599999999999999986

>PLN02614 long-chain acyl-CoA synthetase

Probab=100.00  E-value=6.1e-63  Score=491.93  Aligned_cols=415  Identities=57%  Similarity=1.034  Sum_probs=326.6

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |+++|+++||+|+|+++|++||+++++||+++|++++||++.++++++.+++++++++++|++.+....+..........
T Consensus        96 L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~  175 (666)
T PLN02614         96 LRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEY  175 (666)
T ss_pred             HHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHHHHHhccccccc
Confidence            46789999999999999999999999999999999999999999999999999999999999876655544333222223


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCC-CCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSV  159 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~  159 (415)
                      ++.++.++.............+.....++++...+. .....+...++|+++|+|||||||.||||++||+++...+...
T Consensus       176 l~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~  255 (666)
T PLN02614        176 MKTVVSFGGVSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGV  255 (666)
T ss_pred             ceEEEEeCCCChHHhhhhhhcCcEEEEHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHH
Confidence            566776654221111001111223456777665432 1112234567999999999999999999999999999877654


Q ss_pred             hhhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCCCHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHHH
Q 014951          160 DQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISN  239 (415)
Q Consensus       160 ~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~  239 (415)
                      ...+......+..+|++++++|++|.++....+.+++.|+++++.+.++..+++.|++++||+++++|++++.+.+.+..
T Consensus       256 ~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~  335 (666)
T PLN02614        256 IRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQK  335 (666)
T ss_pred             HhhccccccCCCCCcEEEEeccHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHH
Confidence            43321111246789999999999999998766667889999999877999999999999999999999999999987777


Q ss_pred             hhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCCceE
Q 014951          240 KISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLT  319 (415)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~~  319 (415)
                      .........+++++++++.++..+..+.......+..+.+.+++++..+++++|.+++||+++++++.++++...+++++
T Consensus       336 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~~~~~~~~~~~~i~  415 (666)
T PLN02614        336 KLSDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVL  415 (666)
T ss_pred             HHhccCHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHhcCCCEE
Confidence            66666777788888888877666555544444455667778889999998899999999999998876555443358999


Q ss_pred             EeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhhhhhhcC
Q 014951          320 QGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVD  399 (415)
Q Consensus       320 ~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~~~~~~  399 (415)
                      +.||+||++...+...+....+.+++|+|+||++++|+|.++++..+++.|+.|||+|+||+++.|||++|+.|.++|.|
T Consensus       416 ~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vrGp~v~~GY~~~pe~T~~~f~d  495 (666)
T PLN02614        416 QGYGLTESCAGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYKREDLTKEVLID  495 (666)
T ss_pred             eeCchHhhhhheeeeccccCCcCCcccCcCCceEEEEeeecccCcccCCCCCCceEEEcCCcccccccCCHHHhhhhhcc
Confidence            99999999876555444333345899999999999999855544455667899999999999999999999999999999


Q ss_pred             CceecCceEEEcCCCC
Q 014951          400 GWFHTGDIGEWQPMEL  415 (415)
Q Consensus       400 g~~~TGDlg~~d~~G~  415 (415)
                      |||+|||+|++|+||+
T Consensus       496 Gw~~TGDlg~~d~dG~  511 (666)
T PLN02614        496 GWLHTGDVGEWQPNGS  511 (666)
T ss_pred             CCcccceEEEEcCCCC
Confidence            9999999999999996

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=1.7e-62  Score=489.19  Aligned_cols=414  Identities=79%  Similarity=1.330  Sum_probs=329.7

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |.+.|+++||+|+|+++|++||+++++||+++|++++||++.++.+++.+++++++++++|++.+..+.+..........
T Consensus        94 L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~~~~~~~~~~  173 (660)
T PLN02861         94 IRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSN  173 (660)
T ss_pred             HHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHHHhhhhCCCC
Confidence            45789999999999999999999999999999999999999999999999999999999999877655554433322124


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD  160 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~  160 (415)
                      ++.++.++..................+++++...+......++..++|+++|+|||||||.||||++||++++..+....
T Consensus       174 l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~  253 (660)
T PLN02861        174 LKTIVSFGDVSSEQKEEAEELGVSCFSWEEFSLMGSLDCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTD  253 (660)
T ss_pred             CEEEEEECCCChhhhhhhhcCCcEEEEHHHHHHhCcccCCCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHH
Confidence            56777775432111101111122345677766543222223445689999999999999999999999999998876654


Q ss_pred             hhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCCCHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHHHh
Q 014951          161 QMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNK  240 (415)
Q Consensus       161 ~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~  240 (415)
                      ..+......+..+|++++++|++|+++....+.+++.|+++++.+.++..+++.|++++||+++++|++++.+.+.....
T Consensus       254 ~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~  333 (660)
T PLN02861        254 HLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQGDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQK  333 (660)
T ss_pred             hccccccccCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHH
Confidence            43311111246889999999999999987766689999999998779999999999999999999999999999888888


Q ss_pred             hhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCC-ceE
Q 014951          241 ISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGA-PLT  319 (415)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~-~~~  319 (415)
                      ........+++|+++...++..+..+.......+.++.++++++|..+++++|.+++||+++++++.++++ .++. .++
T Consensus       334 ~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~~~~~-~~~~~~l~  412 (660)
T PLN02861        334 ISSGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFLR-VTSCSVLS  412 (660)
T ss_pred             HhccCHHHHHHHHHHHHHHHHHHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHH-HHcCCCee
Confidence            88888889999999998887766554443334566788889999999999999999999999999866554 5554 799


Q ss_pred             EeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhhhhhhcC
Q 014951          320 QGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVD  399 (415)
Q Consensus       320 ~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~~~~~~  399 (415)
                      +.||+||+++.++....+.....+++|+|+|+++++|+|.++.+......++.|||+++||+++.|||++|+.|.++|.|
T Consensus       413 ~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrGp~v~~GY~~~pe~T~~~f~d  492 (660)
T PLN02861        413 QGYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGYHKRQDLTEEVLID  492 (660)
T ss_pred             EecchhhhhhceeecccccCCCCCCccCccCceEEEEEEccccCcccCCCCCceeEEEcCCcccccccCCHHHHHhhhhc
Confidence            99999999876665443333345899999999999999844433233344568999999999999999999999999999


Q ss_pred             CceecCceEEEcCCCC
Q 014951          400 GWFHTGDIGEWQPMEL  415 (415)
Q Consensus       400 g~~~TGDlg~~d~~G~  415 (415)
                      |||+|||+|++|+||+
T Consensus       493 Gw~~TGDlg~~d~dG~  508 (660)
T PLN02861        493 GWFHTGDIGEWQPNGA  508 (660)
T ss_pred             cCcccCceEEECCCCc
Confidence            9999999999999996

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.4e-60  Score=471.41  Aligned_cols=400  Identities=27%  Similarity=0.481  Sum_probs=318.3

Q ss_pred             CCCCCC-----------CeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhh
Q 014951            4 RGVNPG-----------DRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILS   72 (415)
Q Consensus         4 ~Gv~~g-----------d~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~   72 (415)
                      .|+++|           |+|+|+++|++||+++++||+++|++++|+++.++++++.++|++++++++|++.+..+.+..
T Consensus       114 ~Gv~~g~~~~~~~~g~~d~V~i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l~~  193 (746)
T PTZ00342        114 KGIPEKKYNEEQNNGKFKLLGLYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLE  193 (746)
T ss_pred             cCCCcCccccccccccccEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHHHH
Confidence            599998           999999999999999999999999999999999999999999999999999998777776665


Q ss_pred             cCccCCCCccEEEEecCCCchh------------------h---------------------------------------
Q 014951           73 CLPRCCLYLKTIVSFANVSSSQ------------------K---------------------------------------   95 (415)
Q Consensus        73 ~~~~~~~~~~~v~~~~~~~~~~------------------~---------------------------------------   95 (415)
                      .... .+.++.++.++......                  .                                       
T Consensus       194 ~~~~-~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  272 (746)
T PTZ00342        194 RKNE-LPHLKKLIILDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLK  272 (746)
T ss_pred             hhcc-CCCceEEEEECCCCcccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHH
Confidence            4433 35677888886522100                  0                                       


Q ss_pred             HHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhhhhhhhccccCCCCCE
Q 014951           96 KEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDT  175 (415)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~  175 (415)
                      ......+.....++++...........+..++|+++|+|||||||.||||++||+|+...+.......   .......|+
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~---~~~~~~~d~  349 (746)
T PTZ00342        273 EKAKKLGISIILFDDMTKNKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHS---IFKKYNPKT  349 (746)
T ss_pred             HHhhcCCCEEEEHHHHHhhcccCCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcc---cccCCCCCe
Confidence            00000011223344443322112223445789999999999999999999999999998876543211   001235589


Q ss_pred             EEEeCChhhHHHHHHHHHhhhcCcEEEEeCCCHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHHHhhhcCChhhHHHHHHH
Q 014951          176 YFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFA  255 (415)
Q Consensus       176 ~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~  255 (415)
                      +++++|++|++++...+.+++.|+++++.+.++..+++.|++++||+++++|.+++++.+.+.....+.+...+++|+++
T Consensus       350 ~ls~LPL~Hi~~~~~~~~~l~~G~~i~~~~~~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a  429 (746)
T PTZ00342        350 HLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKI  429 (746)
T ss_pred             EEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence            99999999999998778889999999998779999999999999999999999999999988877777788888999999


Q ss_pred             HHhhhhccccCCCCCCccchhhHH--HHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCCceEEeeccCCCCceeee
Q 014951          256 YNYKLGNMKKGMPQNKAAPLLDSL--VFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFT  333 (415)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~  333 (415)
                      +..+.......     ....++.+  .++++|..+++++|.+++||+|+++++.++++..++++++++||+||+++.++.
T Consensus       430 ~~~~~~~~~~~-----~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g~~i~~gYGlTEt~~~~~~  504 (746)
T PTZ00342        430 LSLRKSNNNGG-----FSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPIFV  504 (746)
T ss_pred             HHHHHHhhcCC-----cchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcCCCEEEeeccCcccceeee
Confidence            88776643211     12223332  578899999999999999999999999999998899999999999999877665


Q ss_pred             ecCCcccccCcccccc-cCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhhhhhh-cCCceecCceEEEc
Q 014951          334 SLADVFNMIGTVGVPM-TTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQ  411 (415)
Q Consensus       334 ~~~~~~~~~~~~G~~~-~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~~~~-~~g~~~TGDlg~~d  411 (415)
                      ..+.. ...+++|+|+ |+++++|+|.++....  ...+.|||+++||+++.|||++|+.|+++| .||||+|||+|++|
T Consensus       505 ~~~~~-~~~gsvG~p~~pg~e~ki~d~~~~~~~--~~~~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~~TGDig~~d  581 (746)
T PTZ00342        505 QHADD-NNTESIGGPISPNTKYKVRTWETYKAT--DTLPKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQIN  581 (746)
T ss_pred             ccCCC-CCcccccCcCCCcEEEEEecccccccC--CCCCceEEEEecCcccccccCChhhhhhhcCcCCcccCCcEEEEC
Confidence            54433 3458999998 9999999984432222  233579999999999999999999999999 59999999999999


Q ss_pred             CCCC
Q 014951          412 PMEL  415 (415)
Q Consensus       412 ~~G~  415 (415)
                      +||+
T Consensus       582 ~dG~  585 (746)
T PTZ00342        582 KNGS  585 (746)
T ss_pred             CCCe
Confidence            9996

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=6.7e-60  Score=469.65  Aligned_cols=415  Identities=49%  Similarity=0.885  Sum_probs=332.0

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |.+.|+++||+|+|+++|++||+++++||+++|++++|+++.++++++.++++.++++++|++...............+.
T Consensus        93 L~~~Gv~~gd~V~i~~~n~~ew~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~  172 (660)
T PLN02430         93 LRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKR  172 (660)
T ss_pred             HHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHHHhhhcccCCC
Confidence            45679999999999999999999999999999999999999999999999999999999999875433222211111245


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCC-CCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSV  159 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~  159 (415)
                      ++.++.++.............+....+|+++...+. ......+..++|+++|+|||||||.||||++||+++...+...
T Consensus       173 l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~  252 (660)
T PLN02430        173 LKAIVSFTSVTEEESDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGV  252 (660)
T ss_pred             ceEEEEECCCChHHhhhhhcCCcEEEEHHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHH
Confidence            667777764322111111112334567887765442 1222234468999999999999999999999999999887654


Q ss_pred             hhhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCCCHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHHH
Q 014951          160 DQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISN  239 (415)
Q Consensus       160 ~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~  239 (415)
                      ..........++..|++++++|++|.++....+.+++.|+++++...++..+++.+++++||++.++|.+++.+.+....
T Consensus       253 ~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~i~~~~~~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~  332 (660)
T PLN02430        253 DLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFERIHEGIQK  332 (660)
T ss_pred             HhhccccccCCCCCCEEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHH
Confidence            32211111245789999999999999998876677899999988877889999999999999999999999999998888


Q ss_pred             hhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCCceE
Q 014951          240 KISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLT  319 (415)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~~  319 (415)
                      .........+.+|+++.+.+...++.+.......+.++.+.+++++..+|+++|.+++||+++++++.++++...+..++
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~~~~~~~~i~  412 (660)
T PLN02430        333 ALQELNPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVV  412 (660)
T ss_pred             HHhccCHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHHHHhcCCCee
Confidence            87777888899999999988877765443333445667788999999999999999999999999998877765457899


Q ss_pred             EeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhhhhhhcC
Q 014951          320 QGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVD  399 (415)
Q Consensus       320 ~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~~~~~~  399 (415)
                      +.||+||+++.++...+......+++|+|.+++++++++.++.+..+.+.++.|||+|+||+++.|||++|+.|.++|.|
T Consensus       413 ~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~GY~~~~e~t~~~~~d  492 (660)
T PLN02430        413 QGYGLTETLGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPELTEEVMKD  492 (660)
T ss_pred             eecchhhhhhceEeeccccCCCCCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEecCCCccccccCChHHhhhhhhc
Confidence            99999999887766554444445899999999999998855555455666678999999999999999999999999999


Q ss_pred             CceecCceEEEcCCCC
Q 014951          400 GWFHTGDIGEWQPMEL  415 (415)
Q Consensus       400 g~~~TGDlg~~d~~G~  415 (415)
                      |||+|||+|++|+||+
T Consensus       493 Gw~~TGDig~~d~dG~  508 (660)
T PLN02430        493 GWFHTGDIGEILPNGV  508 (660)
T ss_pred             cceeccceEEECCCCc
Confidence            9999999999999996

>PLN02736 long-chain acyl-CoA synthetase

Probab=100.00  E-value=5.5e-60  Score=471.81  Aligned_cols=405  Identities=41%  Similarity=0.730  Sum_probs=329.3

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |+++|+++||+|+|+++|++||+++++||+++|++++|+++.++++++.+++++++++++|++.+..+.+...... .+.
T Consensus        95 L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~~~-~~~  173 (651)
T PLN02736         95 LVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLSE-IPS  173 (651)
T ss_pred             HHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHhhc-CCC
Confidence            4578999999999999999999999999999999999999999999999999999999999998776666554443 255


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCC-CCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSV  159 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~  159 (415)
                      ++.++..+...................++++..... ......+..++|+++|+|||||||.||||++||+++..++...
T Consensus       174 l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~  253 (651)
T PLN02736        174 VRLIVVVGGADEPLPSLPSGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGS  253 (651)
T ss_pred             ceEEEEECCCchhhhhhhccCCcEEEEHHHHHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHH
Confidence            667776643221111111112234567777765432 1222334578999999999999999999999999999988876


Q ss_pred             hhhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCCCHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHHH
Q 014951          160 DQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISN  239 (415)
Q Consensus       160 ~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~  239 (415)
                      ...+     .+.++|++++++|++|.+++...+.+++.|+++++.+.++..+++.|++++||+++++|++++.+.+.+..
T Consensus       254 ~~~~-----~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~  328 (651)
T PLN02736        254 SLST-----KFYPSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMDDLAALRPTIFCSVPRLYNRIYDGITN  328 (651)
T ss_pred             Hhcc-----CCCCCCEEEEeCCHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEecchHHHHHHHHHHHH
Confidence            6555     67789999999999999999888888999999999888899999999999999999999999999998888


Q ss_pred             hhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCCceE
Q 014951          240 KISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLT  319 (415)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~~  319 (415)
                      .....+...++++++++..+...+..+.   ...+.++.+.+++++..+++++|.+++||+++++++.+++.+.++.+++
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g~~~~  405 (651)
T PLN02736        329 AVKESGGLKERLFNAAYNAKKQALENGK---NPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRVL  405 (651)
T ss_pred             HHhcccHHHHHHHHHHHHHHHHHHHcCC---CCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhCCCeE
Confidence            8888888888999988777654443321   1224567778888888888899999999999999999999988999999


Q ss_pred             EeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCC-CCCCCCCCCeEEEecCCccccccCCchhhhhhh-
Q 014951          320 QGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGY-DALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-  397 (415)
Q Consensus       320 ~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~-~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~~~~-  397 (415)
                      +.||+||+++.++...... ...+++|+|+||++++|+|.+++.. ....+++.|||+++||+++.|||++|+.|.++| 
T Consensus       406 ~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~~  484 (651)
T PLN02736        406 EGYGMTETSCVISGMDEGD-NLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVID  484 (651)
T ss_pred             EEechHHhchheeccCCCC-CCCCccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhhhc
Confidence            9999999987665544433 3458999999999999998333211 011233579999999999999999999999999 


Q ss_pred             cCCceecCceEEEcCCCC
Q 014951          398 VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       398 ~~g~~~TGDlg~~d~~G~  415 (415)
                      .||||+|||+|++|+||+
T Consensus       485 ~dgw~~TGDlg~~d~dG~  502 (651)
T PLN02736        485 EDGWLHTGDIGLWLPGGR  502 (651)
T ss_pred             cCCCeeccceEEEcCCCc
Confidence            689999999999999996

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=7.7e-60  Score=422.35  Aligned_cols=406  Identities=36%  Similarity=0.618  Sum_probs=351.2

Q ss_pred             CccCCCCCCCe-EEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCC
Q 014951            1 MRSRGVNPGDR-CGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCL   79 (415)
Q Consensus         1 L~~~Gv~~gd~-V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~   79 (415)
                      |...|++++++ |+|+++.+.+|.++++||++.+.++|.+...+..+.+.+-|+.++++.+|++.+.++.+...++.. .
T Consensus       106 L~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~~~LL~kl~~~l~~~-~  184 (678)
T KOG1180|consen  106 LVKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTDSELLPKLKAPLKQA-K  184 (678)
T ss_pred             HHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeCHHHHHHHHHHHhcc-C
Confidence            45679997776 999999999999999999999999999999999999999999999999999999999777665544 8


Q ss_pred             CccEEEEecCCCc----hhhHHhhhcCceeecHHHHHhcCCCC-CCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHH
Q 014951           80 YLKTIVSFANVSS----SQKKEAEELGVSCFSWEEFLQLGTLD-CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA  154 (415)
Q Consensus        80 ~~~~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~  154 (415)
                      .++.+|.++..+.    +...........+.+|+++.+-+... .+..++.++|+|+|+|||||||.||||+++|.|+++
T Consensus       185 ~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~~~P~p~Dia~IMYTSGSTG~PKGVml~H~NiVA  264 (678)
T KOG1180|consen  185 TVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEIPPHPPKPSDIACIMYTSGSTGLPKGVMLTHSNIVA  264 (678)
T ss_pred             ceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCCCCCCCCCCCceEEEEEcCCCCCCCceEEEecccHHh
Confidence            8999999995332    11111223467889999999877322 334455889999999999999999999999999999


Q ss_pred             HhhhhhhhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC----C-----HHHHHHHHHhhCCeEEEe
Q 014951          155 EVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG----D-----VRYLMEDIQELKPTMFSG  225 (415)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~----~-----~~~~~~~i~~~~~t~~~~  225 (415)
                      .+.......    ..+.+.|+++.++|+.|++-+.+-+.+++.|+.+-+.+.    |     ...--..+...+||.|.+
T Consensus       265 ~~~G~~~~v----~~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~~TLtdts~ki~kg~kGD~~~lkPTiM~~  340 (678)
T KOG1180|consen  265 GVTGVGENV----PELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSPLTLTDTSSKIKKGCKGDLTELKPTIMAA  340 (678)
T ss_pred             hhhhhcccC----cccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCcceecccchhhccCCcCccccccchhhhh
Confidence            998765543    267899999999999999999999999999999988754    1     112223356789999999


Q ss_pred             CcHHHHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHH
Q 014951          226 VPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIH  305 (415)
Q Consensus       226 ~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~  305 (415)
                      +|++|+++.+....++.+.+...+++|..++..++..++..   ....+.++.+.|+++|..+|.+||.+++||+|++++
T Consensus       341 VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~~---g~~s~~ld~lVFkKIr~~lGG~lR~~LsGGapLS~d  417 (678)
T KOG1180|consen  341 VPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIERN---GPGSPLLDALVFKKIRALLGGNLRYILSGGAPLSPD  417 (678)
T ss_pred             hHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhcc---CCchhhHHHHHHHHHHHHhCCceEEEEeCCCCCCHH
Confidence            99999999999999999999999999999999888887731   233678999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCceEEeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCcccc
Q 014951          306 VEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSG  385 (415)
Q Consensus       306 ~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~g  385 (415)
                      +.+++..++.+++.++||.||+++..+...+....- +.+|.|++.++++++|.+|++..+-..-..|||+++|+++..|
T Consensus       418 tQrF~nic~C~Pv~qGYGLTEtca~~tv~e~~d~~~-g~vG~pl~c~eiKLvdw~EgGY~~~~~PPrGEI~i~G~~vt~g  496 (678)
T KOG1180|consen  418 TQRFMNICFCCPVLQGYGLTETCAAATVLEPEDFST-GRVGAPLPCCEIKLVDWEEGGYFAKNKPPRGEILIGGPNVTMG  496 (678)
T ss_pred             HHHHHHHhccccccccccccchhcccEecChhhccc-ccccCCccceEEEEEEhhhcCccCCCCCCCceEEecCCccChh
Confidence            999999999999999999999999888777776666 8999999999999999888887666544689999999999999


Q ss_pred             ccCCchhhhhhh--cCC--ceecCceEEEcCCCC
Q 014951          386 YYKRPDLTEEVI--VDG--WFHTGDIGEWQPMEL  415 (415)
Q Consensus       386 Y~~~~~~~~~~~--~~g--~~~TGDlg~~d~~G~  415 (415)
                      |++||+.|++.|  .||  ||+|||+|++.+||.
T Consensus       497 Y~kn~ekT~e~ft~~~G~~WF~TGDIGe~~pdG~  530 (678)
T KOG1180|consen  497 YYKNEEKTKEDFTVEDGQRWFRTGDIGEFHPDGC  530 (678)
T ss_pred             hhCChhhhhhhceecCCcEEEeccccceecCCCc
Confidence            999999999999  488  999999999999984

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=100.00  E-value=5.2e-58  Score=458.74  Aligned_cols=409  Identities=34%  Similarity=0.589  Sum_probs=323.7

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |.++|+++||+|+|+++|++||+++++||+++|++++||++.++++++.++|+.++++++|++.+....+...... .+.
T Consensus       123 L~~lG~~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~~~~-~~~  201 (696)
T PLN02387        123 LVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDISSQ-LET  201 (696)
T ss_pred             HHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHHhhc-cCC
Confidence            4578999999999999999999999999999999999999999999999999999999999998776666554433 256


Q ss_pred             ccEEEEecCCCchhhHH-hhhcCceeecHHHHHhcCC-CCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhh
Q 014951           81 LKTIVSFANVSSSQKKE-AEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS  158 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~  158 (415)
                      ++.++.+++........ ..........++++...+. .........++|+++|+|||||||.||||++||+++..++..
T Consensus       202 l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~  281 (696)
T PLN02387        202 VKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAG  281 (696)
T ss_pred             ceEEEEECCCCchhhhhhhccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHH
Confidence            77888886543211100 0112234556777765442 122223456899999999999999999999999999988876


Q ss_pred             hhhhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC----C-----HHHHHHHHHhhCCeEEEeCcHH
Q 014951          159 VDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG----D-----VRYLMEDIQELKPTMFSGVPRV  229 (415)
Q Consensus       159 ~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~----~-----~~~~~~~i~~~~~t~~~~~P~~  229 (415)
                      ....+    ..+..+|++++++|++|++++...+.++..|+++.+...    +     +..++..+++++||++.++|.+
T Consensus       282 ~~~~~----~~~~~~d~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~  357 (696)
T PLN02387        282 VMTVV----PKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAI  357 (696)
T ss_pred             HHhhc----CCCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHH
Confidence            54332    146789999999999999998876666777777765332    1     2345678999999999999999


Q ss_pred             HHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCC--CCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHH
Q 014951          230 YDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGM--PQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVE  307 (415)
Q Consensus       230 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~  307 (415)
                      ++.+.+.............+++|++++..++...+...  .....+..++.+.+++++..+|+++|.+++||+|+++++.
T Consensus       358 l~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~~~~  437 (696)
T PLN02387        358 LDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQ  437 (696)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHH
Confidence            99999988777777788889999999887765543211  1123455778889999999999999999999999999999


Q ss_pred             HHHHHhcCCceEEeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCC-CCCCCCeEEEecCCccccc
Q 014951          308 EFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDAL-SSVPRGEICLRGNTLFSGY  386 (415)
Q Consensus       308 ~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~-~~~~~Gel~v~~~~~~~gY  386 (415)
                      ++++..+++++++.||+||+++.++....+.. ..+++|+|+|+++++|+|.++++.... .+++.|||+|+||+++.||
T Consensus       438 ~~~~~~~g~~v~~~YG~TEt~~~~~~~~~~~~-~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrGp~v~~GY  516 (696)
T PLN02387        438 RFINICLGAPIGQGYGLTETCAGATFSEWDDT-SVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGY  516 (696)
T ss_pred             HHHHHHcCCCeeEeechhhcccceeecCcccC-CCCccCCCCCceEEEEeeccccCcccCCCCCCCceEEeccCcccchh
Confidence            99988889999999999999877665544333 348999999999999998555543221 2345799999999999999


Q ss_pred             cCCchhhhhhhc---CC--ceecCceEEEcCCCC
Q 014951          387 YKRPDLTEEVIV---DG--WFHTGDIGEWQPMEL  415 (415)
Q Consensus       387 ~~~~~~~~~~~~---~g--~~~TGDlg~~d~~G~  415 (415)
                      |++|+.|.++|.   +|  ||+|||+|++|+||+
T Consensus       517 ~~~pe~T~~~f~~d~~G~~W~~TGDig~~d~dG~  550 (696)
T PLN02387        517 FKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGC  550 (696)
T ss_pred             cCCHHHHhhhhccccCCCceeecCceEEECCCCc
Confidence            999999999982   35  999999999999996

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=7.6e-59  Score=437.37  Aligned_cols=351  Identities=28%  Similarity=0.443  Sum_probs=285.0

Q ss_pred             CCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEE
Q 014951            5 GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTI   84 (415)
Q Consensus         5 Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v   84 (415)
                      |+++||+|++++||+++++++++||+.+|++..+++|.+.+.++.++++.++++++|++.+..+.+........   ..+
T Consensus        68 ~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~kiif~d~~~~~~i~~~~~~~~---~~i  144 (537)
T KOG1176|consen   68 GIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNPRLTASEIAKQLKDSKPKLIFVDEDFYDKISEATSKLA---LKI  144 (537)
T ss_pred             CCCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCcccCHHHHHHHHHhcCCeEEEEcCchHHHHHHHHhhcC---Cce
Confidence            58999999999999999999999999999999999999999999999999999999999999988876654321   344


Q ss_pred             EEecCCCchhhHHhhhcCceeec-HHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhhhhh
Q 014951           85 VSFANVSSSQKKEAEELGVSCFS-WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF  163 (415)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~  163 (415)
                      +.+........   ......... +..+...+.... ..+...+|++.+.|||||||.||||++||++++.+........
T Consensus       145 ~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~  220 (537)
T KOG1176|consen  145 IVLTGDEGVIS---ISDLVEDLDAFEDLMPEGLPDG-IRPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGW  220 (537)
T ss_pred             EEEecccCccc---cccccccccchhhccccCCCcc-cccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcc
Confidence            44433210000   000011112 444444332222 5667789999999999999999999999999998877643332


Q ss_pred             hhccccCCCCCEEEEeCChhhHHHHHHHHH-hhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHHHhh
Q 014951          164 VVTGKVCSEEDTYFSFLPLAHIYDQIIETH-CIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKI  241 (415)
Q Consensus       164 ~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~-~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~  241 (415)
                           .....|+.++.+|++|.+|+...+. .+..|+++++.+. ++..+++.|++|++|++.++|.++..+++.     
T Consensus       221 -----~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~-----  290 (537)
T KOG1176|consen  221 -----ELTSDDVYLCTLPLFHIYGLITLLLSLLAGGTTIICLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAKS-----  290 (537)
T ss_pred             -----cCCCCceEEEechHHHHhHHHHHHHHHHhCCceEEECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhcC-----
Confidence                 6667999999999999999998776 5666666777766 999999999999999999999999998762     


Q ss_pred             hcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcC-CceEE
Q 014951          242 SSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG-APLTQ  320 (415)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~-~~~~~  320 (415)
                                                      +.....++        +++|.+.+||+++++++.+++++.++ ..+.+
T Consensus       291 --------------------------------p~~~~~~l--------~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q  330 (537)
T KOG1176|consen  291 --------------------------------PIVKKYDL--------SSLRSVLSGGAPLSPATLEKVKERLPNVTVIQ  330 (537)
T ss_pred             --------------------------------CccCcccC--------CccEEEEecCCCCCHHHHHHHHHhCCCceEEE
Confidence                                            11222222        48999999999999999999999998 89999


Q ss_pred             eeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhhhhhhcC-
Q 014951          321 GYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVD-  399 (415)
Q Consensus       321 ~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~~~~~~-  399 (415)
                      .||+||+++.++.+......+++++|+++++++.+|.+ +.|  ..+++++.||||++|+.+++||++||++|++.|.+ 
T Consensus       331 ~YGmTE~~~~~~~~~~~~e~k~~svG~~~~g~~~~v~~-e~g--~~l~~~~~GEI~vrg~~imkGY~~NpeaT~~~~~~~  407 (537)
T KOG1176|consen  331 GYGMTEAGGLITSNDWGPERKPGSVGRLLPGVRVKVLD-ETG--VSLGPNQTGEICVRGPQVMKGYLKNPEATKEAFDDD  407 (537)
T ss_pred             eeccccccCceeecCCCccCcccccCccccceEEEeeC-CCC--CCCCCCCceEEEEECcccchhhcCChHHHHhhcccC
Confidence            99999999776665544435679999999999999888 665  45566799999999999999999999999999955 


Q ss_pred             CceecCceEEEcCCCC
Q 014951          400 GWFHTGDIGEWQPMEL  415 (415)
Q Consensus       400 g~~~TGDlg~~d~~G~  415 (415)
                      |||+|||+|++|+|||
T Consensus       408 GW~~TGDiGy~D~DG~  423 (537)
T KOG1176|consen  408 GWFHTGDLGYFDEDGY  423 (537)
T ss_pred             CccccCceEEEcCCCe
Confidence            9999999999999997

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=5.3e-57  Score=452.54  Aligned_cols=402  Identities=32%  Similarity=0.567  Sum_probs=316.0

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |++.|+++||+|+|+++|++||+++++||+++|++++|+++.++++++.+++++++++++|++.+....+..........
T Consensus       138 L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~~~~~l~~~~~~~~~~  217 (700)
T PTZ00216        138 LAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGGMP  217 (700)
T ss_pred             HHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHHHHHHHHHhhhhccCC
Confidence            45789999999999999999999999999999999999999999999999999999999999877655544333211111


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCC--C--CCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT--L--DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEV  156 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~  156 (415)
                      ...++.++.....    .........+|+++...+.  .  .....+..++|+++|+|||||||.||||++||+++.+.+
T Consensus       218 ~~~ii~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~  293 (700)
T PTZ00216        218 NTTIIYLDSLPAS----VDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGI  293 (700)
T ss_pred             ceEEEEECCCccc----cccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHHH
Confidence            2245555442211    0112334567877765441  1  111234468999999999999999999999999999887


Q ss_pred             hhhhhhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCCCHHHHHH-------HHHhhCCeEEEeCcHH
Q 014951          157 LSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLME-------DIQELKPTMFSGVPRV  229 (415)
Q Consensus       157 ~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~-------~i~~~~~t~~~~~P~~  229 (415)
                      ......+......+.++|++++++|++|.++.......+..|+.+.+.  ++..+.+       .+++++||++.++|.+
T Consensus       294 ~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~~--~~~~l~~~~~~~~~~l~~~~pT~~~~vP~~  371 (700)
T PTZ00216        294 LALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGFG--SPRTLTDTFARPHGDLTEFRPVFLIGVPRI  371 (700)
T ss_pred             HHHHhhcccccCCCCCCCEEEEEChHHHHHHHHHHHHHHHcCCEEEEC--CHHHhhhhhccccchHHHcCCcEEEechHH
Confidence            765433211111236789999999999999987666667888877663  4555554       6889999999999999


Q ss_pred             HHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHH
Q 014951          230 YDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEF  309 (415)
Q Consensus       230 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~  309 (415)
                      ++.+.+.........+...+++|++++..++.....+.    ..+.++.+.+++++..+++++|.+++||+++++++.++
T Consensus       372 ~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~~~  447 (700)
T PTZ00216        372 FDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEGK----DTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEF  447 (700)
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCC----CCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHH
Confidence            99999988887777788888999999887766554332    23457788889999999999999999999999999999


Q ss_pred             HHHhcCCceEEeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCC
Q 014951          310 LRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKR  389 (415)
Q Consensus       310 ~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~  389 (415)
                      ++..++ ++++.||+||+++.++....... ..+++|+|++|++++|+| +++......+++.|||+|+||+++.|||++
T Consensus       448 ~~~~~~-~l~~~YG~TEt~~~~~~~~~~~~-~~~svG~p~~g~evkI~d-~~~~~~~~~~~~~GEL~vrG~~v~~GY~~~  524 (700)
T PTZ00216        448 VNVVFG-MVIQGWGLTETVCCGGIQRTGDL-EPNAVGQLLKGVEMKLLD-TEEYKHTDTPEPRGEILLRGPFLFKGYYKQ  524 (700)
T ss_pred             HHHHhh-hHhhccCcccccccccccCCCCC-CCCCcCCcCCCeEEEEee-chhhccCCCCCCCceEEEcCCcccchhcCC
Confidence            988778 99999999999876655443322 348999999999999999 544333344556899999999999999999


Q ss_pred             chhhhhhh-cCCceecCceEEEcCCCC
Q 014951          390 PDLTEEVI-VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       390 ~~~~~~~~-~~g~~~TGDlg~~d~~G~  415 (415)
                      |+.|.++| .+|||+|||+|++|+||+
T Consensus       525 pe~T~~~f~~dGw~~TGDig~~d~dG~  551 (700)
T PTZ00216        525 EELTREVLDEDGWFHTGDVGSIAANGT  551 (700)
T ss_pred             hhHhhhhccccCCeeccceEEEcCCCc
Confidence            99999999 789999999999999995

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=100.00  E-value=9.9e-56  Score=389.70  Aligned_cols=353  Identities=23%  Similarity=0.348  Sum_probs=293.9

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCCh-----hhhhhcCc
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI-----PSILSCLP   75 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~   75 (415)
                      |.+.|+++||||++..||+.+|++.+|||+++|.+.+++||++..+++++.|+..+++++|+-..+.     +.++++.+
T Consensus        94 ll~lGL~kGDrVgvwgpN~~~w~l~~lA~A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icP  173 (596)
T KOG1177|consen   94 LLSLGLKKGDRVGVWGPNSYEWVLCQLACARAGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICP  173 (596)
T ss_pred             HHhhcCCCCCEEEEecCChHHHHHHHHHHHHhceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhH
Confidence            4678999999999999999999999999999999999999999999999999999999999986532     22333222


Q ss_pred             ------------cCCCCccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCC------CCCCCCCCCCCeEEEEecCC
Q 014951           76 ------------RCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTL------DCELPPKKKTNISTIMYTSG  137 (415)
Q Consensus        76 ------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~i~~TSG  137 (415)
                                  +.++.++.++..++...         ..+.+.+.+++.....      ........|+|++.|.||||
T Consensus       174 Ev~~~~~G~lkS~~lp~lthvi~~~ed~~---------~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSG  244 (596)
T KOG1177|consen  174 EVMRGDPGQLKSELLPELTHVILADEDHP---------LPGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSG  244 (596)
T ss_pred             HhhcCCCccccccccccceEEEecCCCCc---------CCCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccC
Confidence                        22356677777763321         1234556666544321      12234557899999999999


Q ss_pred             CCCCCceEEeecHHHHHHhhhhhhhhhhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC--CHHHHHHH
Q 014951          138 TTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG--DVRYLMED  214 (415)
Q Consensus       138 tTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~--~~~~~~~~  214 (415)
                      |||.|||+.+||.+++++.......+     .+.+.+++++..|++|.+|... +++++..|++++++..  ++...++.
T Consensus       245 TTG~PKgatLsH~~~~Nna~~vg~r~-----g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqa  319 (596)
T KOG1177|consen  245 TTGAPKGATLSHYNFLNNARAVGARA-----GYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQA  319 (596)
T ss_pred             CCCCCcceeeehhhhhhhHHHHHHHh-----CcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHH
Confidence            99999999999999999999888777     7778889999999999999765 8889999999999765  99999999


Q ss_pred             HHhhCCeEEEeCcHHHHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeE
Q 014951          215 IQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQA  294 (415)
Q Consensus       215 i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~  294 (415)
                      |+++++|.++++|+++..+++.                                     +.....++        +++|.
T Consensus       320 i~~ekcT~l~gtPtM~~Dlln~-------------------------------------~~~~~~~~--------s~lr~  354 (596)
T KOG1177|consen  320 ISNEKCTTLYGTPTMFVDLLNI-------------------------------------PQKQQVDL--------SSLRK  354 (596)
T ss_pred             HHhhceEEEecChHHHHHHhcc-------------------------------------hhhccCch--------hhhhh
Confidence            9999999999999999998762                                     11222223        37899


Q ss_pred             EEEecCCCCHHHHHHHHHhcCC-ceEEeeccCCCCceeeeecCCcc--cccCcccccccCeEEEEeecCCCCCCCCCCCC
Q 014951          295 MLSGAAPLPIHVEEFLRVTSGA-PLTQGYGLTESCSGCFTSLADVF--NMIGTVGVPMTTVEARLESVPEMGYDALSSVP  371 (415)
Q Consensus       295 v~~~G~~~~~~~~~~~~~~~~~-~~~~~yG~tE~~~~~~~~~~~~~--~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~  371 (415)
                      ++.||+|+++++++.+.+..+. .+.-.||+||++.+.+.+..++.  .+..++|..+++.+.+|+| .++..++.+  .
T Consensus       355 ~vigGa~~s~eLlk~iv~~~~m~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~-~~g~~v~~~--~  431 (596)
T KOG1177|consen  355 GVIGGAPVSPELLKLIVNQMNMKDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVD-KDGSEVPLG--T  431 (596)
T ss_pred             heeCCCCCCHHHHHHHHHhhCceeeEEEeeccccCcceeeecCCCCHHHHHhhhhhccccccccccc-CCCCccccC--C
Confidence            9999999999999999887776 57778999999998887766554  3468999999999999999 788766665  7


Q ss_pred             CCeEEEecCCccccccCCchhhhhhh-cCCceecCceEEEcCCCC
Q 014951          372 RGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       372 ~Gel~v~~~~~~~gY~~~~~~~~~~~-~~g~~~TGDlg~~d~~G~  415 (415)
                      .||||+||++++.|||++++.|+++. .|+||+|||+|.+|++|+
T Consensus       432 ~Gel~iRGY~tMl~Ywg~~~kT~eti~~drW~~TGDi~~m~enG~  476 (596)
T KOG1177|consen  432 KGELLIRGYSTMLGYWGEEEKTKETIGNDRWYDTGDIAVMDENGT  476 (596)
T ss_pred             CceEEEEechhheeecCCcccchhhcccccceecCceEEEcCCCc
Confidence            89999999999999999999999988 899999999999999995

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=7.2e-55  Score=423.98  Aligned_cols=352  Identities=29%  Similarity=0.471  Sum_probs=282.1

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |++.||++||+|+|+++|++++++++|||+++|++++||+|.+..+++.++++.++++.++++.+..+......... +.
T Consensus        55 L~~~~v~~gdrVail~~N~~e~~~~~~a~~~~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~  133 (534)
T COG0318          55 LQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEAL-PV  133 (534)
T ss_pred             HHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCEEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhccC-Cc
Confidence            35668999999999999999999999999999999999999999999999999999999999988544444433221 22


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcC-CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSV  159 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~  159 (415)
                      ...+..........          ...+++..... ..........++|+++++|||||||.||||++||+++..+....
T Consensus       134 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~  203 (534)
T COG0318         134 VLVVLLVGDADDRL----------PITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGI  203 (534)
T ss_pred             ceEEEecccccccc----------cccHHHHhhccCCcccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHH
Confidence            22222222111000          02345553322 11122223678999999999999999999999999999998887


Q ss_pred             hhhhhhcccc--CCCCCEEEEeCChhhHHHHHHHH-HhhhcCcEEEEeC---CCHHHHHHHHHhhCCeEEEeCcHHHHHH
Q 014951          160 DQMFVVTGKV--CSEEDTYFSFLPLAHIYDQIIET-HCIHKGCSIGFWR---GDVRYLMEDIQELKPTMFSGVPRVYDRI  233 (415)
Q Consensus       160 ~~~~~~~~~~--~~~~d~~l~~~p~~~~~~~~~~~-~~l~~G~~vv~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l  233 (415)
                      ...+     .  ++..|++++++|++|.+|+...+ ..++.|+++++.+   +++..++..+.++++|++.++|+++..+
T Consensus       204 ~~~~-----~~~~~~~d~~l~~lPl~H~~Gl~~~~~~~~~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~l  278 (534)
T COG0318         204 AAAL-----GGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLREL  278 (534)
T ss_pred             HHHh-----cccCCCCceEEEecChHHHHHHHHHHHHHHHcCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHH
Confidence            7666     5  78999999999999999999755 5599999999987   4999999999999999999999999997


Q ss_pred             HHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHh
Q 014951          234 YTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVT  313 (415)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~  313 (415)
                      +++...                                     ...++.       +++|.+++||+++++++.+.+++.
T Consensus       279 l~~~~~-------------------------------------~~~~~~-------~~lr~~~~gg~~~~~~~~~~~~~~  314 (534)
T COG0318         279 LDNPEK-------------------------------------DDDDLS-------SSLRLVLSGGAPLPPELLERFEER  314 (534)
T ss_pred             HhCCcc-------------------------------------Cccccc-------cceEEEEecCCcCCHHHHHHHHHH
Confidence            662211                                     110111       139999999999999999999999


Q ss_pred             cC-CceEEeeccCCCCceeeeecCCc-ccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCch
Q 014951          314 SG-APLTQGYGLTESCSGCFTSLADV-FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPD  391 (415)
Q Consensus       314 ~~-~~~~~~yG~tE~~~~~~~~~~~~-~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~  391 (415)
                      ++ ..+.+.||+||++..++....+. ....+++|+|+||++++|+| ++++ .+.+ |+.|||+++||+++.|||++|+
T Consensus       315 ~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~pg~~v~Ivd-~~~~-~~~p-g~vGei~irgp~v~~GY~~~pe  391 (534)
T COG0318         315 FGPIAILEGYGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVD-PDGG-EVLP-GEVGEIWVRGPNVMKGYWNRPE  391 (534)
T ss_pred             hCCCceEEeecccccCceeecCCCchhhhcCCcccccCCCcEEEEEe-CCCC-ccCC-CCceEEEEECchhhhhhcCChH
Confidence            98 57999999999998777766665 23457889999999999999 6665 2333 7899999999999999999999


Q ss_pred             hhhhhhcC-CceecCceEEEcCCCC
Q 014951          392 LTEEVIVD-GWFHTGDIGEWQPMEL  415 (415)
Q Consensus       392 ~~~~~~~~-g~~~TGDlg~~d~~G~  415 (415)
                      .|.+.|.+ |||+|||+|++|+||+
T Consensus       392 ~t~~~f~~~gW~~TGDlg~~d~~G~  416 (534)
T COG0318         392 ATAEAFDEDGWLRTGDLGYVDEDGY  416 (534)
T ss_pred             HHHHhhccCCeeeecceEEEcCCcc
Confidence            99998875 9999999999999986

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=1.4e-54  Score=406.25  Aligned_cols=342  Identities=22%  Similarity=0.291  Sum_probs=278.5

Q ss_pred             CCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcC--ccCCCCc
Q 014951            4 RGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCL--PRCCLYL   81 (415)
Q Consensus         4 ~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~--~~~~~~~   81 (415)
                      .|+ +||||++++|+.+|.++++|||+++|++.+|+.+.++++++..+++++++|++|+++....+.....  .......
T Consensus        61 ~gv-kGDrV~iymp~~pe~~~a~LA~~riGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~  139 (528)
T COG0365          61 GGV-KGDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVL  139 (528)
T ss_pred             CCC-CCCEEEEEcCCCHHHHHHHHHHHHcCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhh
Confidence            568 9999999999999999999999999999999999999999999999999999999987654332211  0000001


Q ss_pred             cEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhhh
Q 014951           82 KTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQ  161 (415)
Q Consensus        82 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~  161 (415)
                      ..+++.....              ..|.+.........+..+.+.+|+++++|||||||.||||+++|..++........
T Consensus       140 ~~~iv~~r~~--------------~~~~~~~~~~~~~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~  205 (528)
T COG0365         140 SSVVVVPRLG--------------LWYDEAVEKASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAK  205 (528)
T ss_pred             cceEEecccc--------------ccHHHHhhccCCCCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHH
Confidence            1133333221              56677766554444455689999999999999999999999999987777655433


Q ss_pred             hhhhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC----CHHHHHHHHHhhCCeEEEeCcHHHHHHHHH
Q 014951          162 MFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTG  236 (415)
Q Consensus       162 ~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~  236 (415)
                      ..    ..+.++|++++..++.|.+|... ++.++..|+++++.+.    ++..+++.|+++++|.+++.|+.+++|.+.
T Consensus       206 ~~----~~~~~~Dv~w~~ad~GW~~g~~~~v~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~  281 (528)
T COG0365         206 FH----GDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKL  281 (528)
T ss_pred             Hh----hCCCCCCEEEeCCCchhhhCchHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhc
Confidence            21    26679999999999999999997 8899999999999876    389999999999999999999999998761


Q ss_pred             HHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCC
Q 014951          237 ISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGA  316 (415)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~  316 (415)
                      -.                                     .++.++        ++||.+.++|||++++..+|+.+.+|+
T Consensus       282 g~-------------------------------------~~~~dl--------ssLr~~~SaGEPLnpe~~~w~~~~~g~  316 (528)
T COG0365         282 GL-------------------------------------GEPYDL--------SSLRVLGSAGEPLNPEAFEWFYSALGV  316 (528)
T ss_pred             CC-------------------------------------cccccc--------hhheeeeccCCCCCHHHHHHHHHHhCC
Confidence            11                                     222233        489999999999999999999999999


Q ss_pred             ceEEeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecC--CccccccCCchhhh
Q 014951          317 PLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGN--TLFSGYYKRPDLTE  394 (415)
Q Consensus       317 ~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~--~~~~gY~~~~~~~~  394 (415)
                      +|.+.||+||+++......+ ..+. ++.|.|+||.++.|+| ++++  ++++++ |+|.++.|  +++++||+||+.+.
T Consensus       317 ~i~d~~gqTEtg~~~~~~~~-~~~~-g~~g~p~pG~~~~vvd-d~g~--~~~~~~-G~Lvi~~~~p~~~~~~w~d~er~~  390 (528)
T COG0365         317 WILDIYGQTETGMGFIAGRP-PVKN-GSSGLPLPGYAVRRVD-DEGN--PVPPGV-GELVVRLPWPGMALTYWNDPERYK  390 (528)
T ss_pred             CEeccccccccCccccCCCC-CcCC-CCCCCCCCCceeEEEC-CCCC--cCCCCc-eEEEEeCCCchhhhhhhCCHHHHH
Confidence            99999999999965555444 3334 5559999999999999 7754  444457 99999987  99999999999999


Q ss_pred             hhhcCCceecCceEEEcCCCC
Q 014951          395 EVIVDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       395 ~~~~~g~~~TGDlg~~d~~G~  415 (415)
                      ++|.++||.|||.+++|+|||
T Consensus       391 ~~y~~~~y~tGD~~~~DedGy  411 (528)
T COG0365         391 EAYFGRWYRTGDWAERDEDGY  411 (528)
T ss_pred             HHHhhceeecCceeEEccCCC
Confidence            999666999999999999997

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.1e-51  Score=410.50  Aligned_cols=367  Identities=16%  Similarity=0.206  Sum_probs=271.2

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCC---------hhhhh
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENK---------IPSIL   71 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~---------~~~~~   71 (415)
                      |+++||++||+|+++++|++|+++++|||+++|++++|+++.++++++.+++++++++++|+++..         .+.+.
T Consensus       109 L~~~Gv~~GDrV~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~  188 (647)
T PTZ00237        109 LLNLNISKNDNVLIYMANTLEPLIAMLSCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLK  188 (647)
T ss_pred             HHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999999997631         22222


Q ss_pred             hcCccCCCCccEEEEecCCCc-hhhHH----hhhcCceeecHHHHHhcC-----CCCCCCCCCCCCCeEEEEecCCCCCC
Q 014951           72 SCLPRCCLYLKTIVSFANVSS-SQKKE----AEELGVSCFSWEEFLQLG-----TLDCELPPKKKTNISTIMYTSGTTGE  141 (415)
Q Consensus        72 ~~~~~~~~~~~~v~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~TSGtTG~  141 (415)
                      .+........+.++.+..... .....    ..........|++++...     .......+..++|+++|+|||||||.
T Consensus       189 ~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~  268 (647)
T PTZ00237        189 EAIELSTFKPSNVITLFRNDITSESDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGN  268 (647)
T ss_pred             HHHhcccCCCCEEEEEEcCCcccccccccccccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCC
Confidence            222111011234554321110 00000    000000123466655321     11112334578999999999999999


Q ss_pred             CceEEeecHHHHHHh-hhhhhhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCCC-------HHHHHH
Q 014951          142 PKGVVLTNQAIVAEV-LSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGD-------VRYLME  213 (415)
Q Consensus       142 pK~v~~th~~l~~~~-~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~~-------~~~~~~  213 (415)
                      ||||+++|.+.+... ......+     .....+++++..|++|..+...++.+++.|+++++.+.+       +..+++
T Consensus       269 PKgV~~sh~~~l~~~~~~~~~~~-----~~~~~d~~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~  343 (647)
T PTZ00237        269 SKAVVRSNGPHLVGLKYYWRSII-----EKDIPTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWN  343 (647)
T ss_pred             CCeEEEcCcHHHHHHHHHHHHhc-----CCCCCcEEEEcCCCceEeeHHHHHHHHhCCcEEEEeCCCCCCCCCchHHHHH
Confidence            999999999844333 2222222     556789999999999987666678899999999987642       678999


Q ss_pred             HHHhhCCeEEEeCcHHHHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCcee
Q 014951          214 DIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQ  293 (415)
Q Consensus       214 ~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr  293 (415)
                      .|++++||+++++|++++.+++......                                ......++        ++||
T Consensus       344 ~i~~~~vt~~~~~P~~~~~l~~~~~~~~--------------------------------~~~~~~~l--------~~Lr  383 (647)
T PTZ00237        344 TIEKHKVTHTLTLPKTIRYLIKTDPEAT--------------------------------IIRSKYDL--------SNLK  383 (647)
T ss_pred             HHHHhCeEEEEeCHHHHHHHHhhCcccc--------------------------------ccccccCc--------chhe
Confidence            9999999999999999998865210000                                00000111        3899


Q ss_pred             EEEEecCCCCHHHHHHHHHhcCCceEEeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCC
Q 014951          294 AMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRG  373 (415)
Q Consensus       294 ~v~~~G~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~G  373 (415)
                      .+++||+++++++.+++++.+++++++.||+||+++.+...........+++|+|+||++++|+| +++..+  +.|+.|
T Consensus       384 ~i~~~G~~l~~~~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~~~~~~~~s~G~p~~g~~~~i~d-~~g~~~--~~ge~G  460 (647)
T PTZ00237        384 EIWCGGEVIEESIPEYIENKLKIKSSRGYGQTEIGITYLYCYGHINIPYNATGVPSIFIKPSILS-EDGKEL--NVNEIG  460 (647)
T ss_pred             EEEecCccCCHHHHHHHHHhcCCCEEeeechHHhChhhhccCCCCCCCCCCCccCcCCceEEEEC-CCCCCC--CCCCce
Confidence            99999999999999999999999999999999998655433332223348999999999999999 776544  466999


Q ss_pred             eEEEecC---CccccccCCchhhhhhhc--CCceecCceEEEcCCCC
Q 014951          374 EICLRGN---TLFSGYYKRPDLTEEVIV--DGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       374 el~v~~~---~~~~gY~~~~~~~~~~~~--~g~~~TGDlg~~d~~G~  415 (415)
                      ||++++|   +++.|||++++.+.+.|.  +|||+|||+|++|+||+
T Consensus       461 El~v~~p~~p~~~~gy~~~~~~~~~~f~~~~g~~~TGDlg~~d~dG~  507 (647)
T PTZ00237        461 EVAFKLPMPPSFATTFYKNDEKFKQLFSKFPGYYNSGDLGFKDENGY  507 (647)
T ss_pred             EEEEeccCCchhhCceeCCHHHHHHHHhCCCCEEECCcEEEECCCCe
Confidence            9999986   789999999999988773  79999999999999996

>PLN02654 acetate-CoA ligase

Probab=100.00  E-value=3.9e-51  Score=407.99  Aligned_cols=364  Identities=17%  Similarity=0.222  Sum_probs=273.2

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhh---------hh
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPS---------IL   71 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~---------~~   71 (415)
                      |++.|+++||+|+++++|++|+++++|||+++|++++|+++.++++++..++++++++++|+++.....         +.
T Consensus       137 L~~~Gv~~GdrV~i~~pn~~e~v~a~lA~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~  216 (666)
T PLN02654        137 LKDVGVKKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVD  216 (666)
T ss_pred             HHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHH
Confidence            567899999999999999999999999999999999999999999999999999999999998764321         11


Q ss_pred             hcCccC---CCCccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEee
Q 014951           72 SCLPRC---CLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLT  148 (415)
Q Consensus        72 ~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t  148 (415)
                      .+....   ......++......................|+++........+.....++|+++|+|||||||.||||+++
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~s  296 (666)
T PLN02654        217 AALDESAKNGVSVGICLTYENQLAMKREDTKWQEGRDVWWQDVVPNYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHT  296 (666)
T ss_pred             HHHHhccccCCCccEEEEecccccccccccccccCCcccHHHHhhcCCCCCCceecCCCCceEEEecCCCCCCCceEEec
Confidence            111100   01112222222211000000000000122344444322111222335789999999999999999999999


Q ss_pred             cHHHHHHh-hhhhhhhhhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC-----CHHHHHHHHHhhCCe
Q 014951          149 NQAIVAEV-LSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPT  221 (415)
Q Consensus       149 h~~l~~~~-~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~-----~~~~~~~~i~~~~~t  221 (415)
                      |.+++... ......+     +++++|++++.+|++|..+... ++.+++.|+++++.++     ++..+++.|+++++|
T Consensus       297 h~~~~~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt  371 (666)
T PLN02654        297 TGGYMVYTATTFKYAF-----DYKPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVT  371 (666)
T ss_pred             ccHHHHHHHHHHHHhc-----CCCCCcEEEEcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCe
Confidence            99986443 3333334     6788999999999999998765 6788999999999863     789999999999999


Q ss_pred             EEEeCcHHHHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCC
Q 014951          222 MFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAP  301 (415)
Q Consensus       222 ~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~  301 (415)
                      +++++|++++.+.+....                                   .....++        ++||.++++|++
T Consensus       372 ~~~~~P~~~~~l~~~~~~-----------------------------------~~~~~~l--------~~Lr~i~~~Ge~  408 (666)
T PLN02654        372 IFYTAPTLVRSLMRDGDE-----------------------------------YVTRHSR--------KSLRVLGSVGEP  408 (666)
T ss_pred             EEEeCHHHHHHHHhhCcc-----------------------------------ccccCCh--------hheeEEEEecCC
Confidence            999999999988652100                                   0011112        389999999999


Q ss_pred             CCHHHHHHHHHhcC---CceEEeeccCCCCceeeeecCCc-ccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEE
Q 014951          302 LPIHVEEFLRVTSG---APLTQGYGLTESCSGCFTSLADV-FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICL  377 (415)
Q Consensus       302 ~~~~~~~~~~~~~~---~~~~~~yG~tE~~~~~~~~~~~~-~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v  377 (415)
                      +++++.+++.+.++   +++.+.||+||+++......+.. ..+++++|+|++|++++|+| +++..+  +.++.|||++
T Consensus       409 l~~~~~~~~~~~~g~~~~~i~~~yg~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~g~~~--~~~~~Gel~v  485 (666)
T PLN02654        409 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGKEI--EGECSGYLCV  485 (666)
T ss_pred             CCHHHHHHHHHHhCCCCCceeccccccccCCeeeccCCCCCCCCCCccCCCCCCceEEEEC-CCCCCC--CCCCceEEEE
Confidence            99999999999887   68999999999987665443322 23458999999999999999 777644  4557899999


Q ss_pred             ec--CCccccccCCchhhhhhh---cCCceecCceEEEcCCCC
Q 014951          378 RG--NTLFSGYYKRPDLTEEVI---VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       378 ~~--~~~~~gY~~~~~~~~~~~---~~g~~~TGDlg~~d~~G~  415 (415)
                      ++  |+++.|||++++.+...+   .+|||+|||+|++|+||+
T Consensus       486 ~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGD~~~~d~dG~  528 (666)
T PLN02654        486 KKSWPGAFRTLYGDHERYETTYFKPFAGYYFSGDGCSRDKDGY  528 (666)
T ss_pred             cCCCchhhhhhcCChHHHHHhhhhcCCCEEEeCceEEECCCCc
Confidence            98  789999999999888776   379999999999999996

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=4.6e-51  Score=399.16  Aligned_cols=345  Identities=23%  Similarity=0.243  Sum_probs=266.9

Q ss_pred             CCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEE
Q 014951            7 NPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVS   86 (415)
Q Consensus         7 ~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~   86 (415)
                      .+||+|+++++|++++++++|||+++|++++||++.++.+++.++++.++++++|++.+....+.............++.
T Consensus        65 ~~gd~Val~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~  144 (539)
T PRK06334         65 YPDQHIGIMMPASAGAYIAYFATLLSGKIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIY  144 (539)
T ss_pred             ccCCeEEEEcCCchHHHHHHHHHHhcCCeeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEE
Confidence            48999999999999999999999999999999999999999999999999999999877655543322110001112333


Q ss_pred             ecCCCchhhHHhhhcCceeecHHHHHh------cCC----CCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHh
Q 014951           87 FANVSSSQKKEAEELGVSCFSWEEFLQ------LGT----LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEV  156 (415)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~----~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~  156 (415)
                      ++.....            ..+.+...      ...    .........++++++|+|||||||.||+|++||+++..+.
T Consensus       145 ~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~  212 (539)
T PRK06334        145 MEEVRKE------------LSFWEKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQ  212 (539)
T ss_pred             Eehhhhh------------ccHHHhhhhhhhhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHH
Confidence            3221000            00000000      000    0011234567999999999999999999999999999887


Q ss_pred             hhhhhhhhhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC--CHHHHHHHHHhhCCeEEEeCcHHHHHH
Q 014951          157 LSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRI  233 (415)
Q Consensus       157 ~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l  233 (415)
                      ......+     .+..+|++++++|++|.+++.. ++.++..|+++++...  ++..+++.|+++++|++.++|++++.+
T Consensus       213 ~~~~~~~-----~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l  287 (539)
T PRK06334        213 RACLKFF-----SPKEDDVMMSFLPPFHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYI  287 (539)
T ss_pred             HHHHHhc-----CCCCCceEEEecchHhhhhhHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHH
Confidence            6655544     6678999999999999999874 6778999999988753  899999999999999999999999988


Q ss_pred             HHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHh
Q 014951          234 YTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVT  313 (415)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~  313 (415)
                      ++.....                                     ..+        .++||.+++||+++++++.+++.+.
T Consensus       288 ~~~~~~~-------------------------------------~~~--------~~~lr~i~~gG~~l~~~~~~~~~~~  322 (539)
T PRK06334        288 LKTAKKQ-------------------------------------ESC--------LPSLRFVVIGGDAFKDSLYQEALKT  322 (539)
T ss_pred             HHhhhhc-------------------------------------ccc--------cccccEEEECCccCCHHHHHHHHHH
Confidence            6532110                                     000        1489999999999999999999988


Q ss_pred             c-CCceEEeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchh
Q 014951          314 S-GAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDL  392 (415)
Q Consensus       314 ~-~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~  392 (415)
                      + +..+++.||+||++.++...........+++|+|++|++++|+| ++++ .+++.|+.|||+|+|++++.|||++++.
T Consensus       323 ~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d-~~~~-~~~~~g~~Gel~v~g~~~~~GY~~~~~~  400 (539)
T PRK06334        323 FPHIQLRQGYGTTECSPVITINTVNSPKHESCVGMPIRGMDVLIVS-EETK-VPVSSGETGLVLTRGTSLFSGYLGEDFG  400 (539)
T ss_pred             CCCCeEEecccccccCceEEeccCCCCCCCCcCceecCCCEEEEEc-CCCC-ccCCCCceEEEEEecCcccccccCCccc
Confidence            8 68999999999998776655443333347899999999999998 5433 4566779999999999999999999986


Q ss_pred             hhhhh--cCCceecCceEEEcCCCC
Q 014951          393 TEEVI--VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       393 ~~~~~--~~g~~~TGDlg~~d~~G~  415 (415)
                      +....  .+|||+|||+|++|+||+
T Consensus       401 ~~~~~~~~~~w~~TGD~g~~d~~G~  425 (539)
T PRK06334        401 QGFVELGGETWYVTGDLGYVDRHGE  425 (539)
T ss_pred             ccceeeCCceeEECCCEEEECCCCe
Confidence            54332  367999999999999985

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=100.00  E-value=5.2e-51  Score=401.54  Aligned_cols=355  Identities=22%  Similarity=0.208  Sum_probs=271.1

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |.+.|+++||+|+++++|+++++++++||+++|++++||++.++.+++.++++++++++++++.+.............+.
T Consensus        49 L~~~Gv~~gd~V~v~~~n~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~  128 (563)
T PLN02860         49 LLRLGLRNGDVVAIAALNSDLYLEWLLAVACAGGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPS  128 (563)
T ss_pred             HHHhCCCCCCEEEEEcCCCHHHHHHHHHHhhccEEEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCc
Confidence            45689999999999999999999999999999999999999999999999999999999999886533222221111223


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcC-CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSV  159 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~  159 (415)
                      .+.++..+........    ........+++.... ..........++++++++|||||||.||+|+++|.++..+....
T Consensus       129 ~~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~  204 (563)
T PLN02860        129 LMWQVFLESPSSSVFI----FLNSFLTTEMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAK  204 (563)
T ss_pred             eeEEEEecCccccccc----chhhccccchhccCccccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHH
Confidence            3334433322100000    000111122221111 00111123467899999999999999999999999998776665


Q ss_pred             hhhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHH
Q 014951          160 DQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGIS  238 (415)
Q Consensus       160 ~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  238 (415)
                      ...+     .+..+|+++.++|++|.+++...+.++..|+++++.+. ++..+++.|+++++|++.++|+++..+++...
T Consensus       205 ~~~~-----~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~  279 (563)
T PLN02860        205 IAIV-----GYGEDDVYLHTAPLCHIGGLSSALAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTR  279 (563)
T ss_pred             Hhhc-----CCCCCCEEEEecCchhhccHHHHHHHHHcCceEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhh
Confidence            4444     67789999999999999998878888999999988876 99999999999999999999999998865321


Q ss_pred             HhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhc-CCc
Q 014951          239 NKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAP  317 (415)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~-~~~  317 (415)
                      ....                                           ....+++|.+++||+++++++.+.+.+.+ +.+
T Consensus       280 ~~~~-------------------------------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~  316 (563)
T PLN02860        280 KSMT-------------------------------------------WKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAK  316 (563)
T ss_pred             hhhc-------------------------------------------cccccceeEEEeCCCcCCHHHHHHHHHhcCCCc
Confidence            1000                                           00114899999999999999999999888 689


Q ss_pred             eEEeeccCCCCceeeeecCCc----------------------ccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeE
Q 014951          318 LTQGYGLTESCSGCFTSLADV----------------------FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEI  375 (415)
Q Consensus       318 ~~~~yG~tE~~~~~~~~~~~~----------------------~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel  375 (415)
                      +++.||+||++..+.......                      .....++|+|+++++++|++ ++       +++.|||
T Consensus       317 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~-~~-------~g~~Gel  388 (563)
T PLN02860        317 LFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGL-DE-------SSRVGRI  388 (563)
T ss_pred             eecCCCccccCcccccccccccccccchhhhhhhcccccccccccCCcccCCccCCcEEEEec-CC-------CCceeEE
Confidence            999999999976544322111                      01124789999999999998 44       3589999


Q ss_pred             EEecCCccccccCCchhhhhhh-cCCceecCceEEEcCCCC
Q 014951          376 CLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       376 ~v~~~~~~~gY~~~~~~~~~~~-~~g~~~TGDlg~~d~~G~  415 (415)
                      +++|+.++.|||++++.+.+.| .+|||+|||+|++|+||+
T Consensus       389 ~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDl~~~d~dG~  429 (563)
T PLN02860        389 LTRGPHVMLGYWGQNSETASVLSNDGWLDTGDIGWIDKAGN  429 (563)
T ss_pred             EEecCcccccccCCccccchhccCCCeEEccceEEEcCCCC
Confidence            9999999999999999999888 689999999999999995

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1e-50  Score=400.17  Aligned_cols=353  Identities=16%  Similarity=0.245  Sum_probs=284.9

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |.+.|+++||+|+++++|++++++++|||+++|++++|+++.++++++.++++.++++++|++..........   ..+.
T Consensus        90 L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~---~~~~  166 (570)
T PRK04319         90 LKELGVEKGDRVFIFMPRIPELYFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPAD---DLPS  166 (570)
T ss_pred             HHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccchh---cCCC
Confidence            4567999999999999999999999999999999999999999999999999999999999988765443211   1234


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD  160 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~  160 (415)
                      .+.++.++....        ......++.+++..........+..++++++++|||||||.||+|+++|+++..++....
T Consensus       167 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~  238 (570)
T PRK04319        167 LKHVLLVGEDVE--------EGPGTLDFNALMEQASDEFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGK  238 (570)
T ss_pred             ceEEEEECCCcC--------CCcCccCHHHHHhhcCCcCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHH
Confidence            455555543211        011234566655443222333455678999999999999999999999999998877665


Q ss_pred             hhhhhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC--CHHHHHHHHHhhCCeEEEeCcHHHHHHHHHH
Q 014951          161 QMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGI  237 (415)
Q Consensus       161 ~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~  237 (415)
                      ..+     .+..+|++++..|++|.++... ++.+++.|+++++...  ++..+++.|+++++|+++++|++++.+.+..
T Consensus       239 ~~~-----~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~  313 (570)
T PRK04319        239 YVL-----DLHEDDVYWCTADPGWVTGTSYGIFAPWLNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAG  313 (570)
T ss_pred             Hhc-----CCCCCceEEecCChHHhhCchHHHHHHHhcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcC
Confidence            555     6778999999999999988764 7788999999998754  8999999999999999999999999886411


Q ss_pred             HHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCCc
Q 014951          238 SNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP  317 (415)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~  317 (415)
                      ...                                   ....++        +++|.+++||+++++++.+++++.++.+
T Consensus       314 ~~~-----------------------------------~~~~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~g~~  350 (570)
T PRK04319        314 DDL-----------------------------------VKKYDL--------SSLRHILSVGEPLNPEVVRWGMKVFGLP  350 (570)
T ss_pred             Ccc-----------------------------------cccCCc--------ccceEEEEcccCCCHHHHHHHHHHhCCC
Confidence            000                                   000011        3899999999999999999999999999


Q ss_pred             eEEeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEec--CCccccccCCchhhhh
Q 014951          318 LTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRG--NTLFSGYYKRPDLTEE  395 (415)
Q Consensus       318 ~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~--~~~~~gY~~~~~~~~~  395 (415)
                      +++.||+||++..+..........++++|+|+||++++|++ +++...  +.|+.|||+++|  |.++.|||++++.+.+
T Consensus       351 i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~~~~~--~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~  427 (570)
T PRK04319        351 IHDNWWMTETGGIMIANYPAMDIKPGSMGKPLPGIEAAIVD-DQGNEL--PPNRMGNLAIKKGWPSMMRGIWNNPEKYES  427 (570)
T ss_pred             eEeceeecccCCEEEecCCCCCCCCCcCcCCCCCCEEEEEC-CCCCCC--CCCCceEEEEcCCCChHHhHhcCCHHHhhh
Confidence            99999999998776554443333458999999999999999 776544  567999999997  8999999999999999


Q ss_pred             hhcCCceecCceEEEcCCCC
Q 014951          396 VIVDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       396 ~~~~g~~~TGDlg~~d~~G~  415 (415)
                      .|.+|||+|||+|++|+||+
T Consensus       428 ~~~~gw~~TGDl~~~~~~g~  447 (570)
T PRK04319        428 YFAGDWYVSGDSAYMDEDGY  447 (570)
T ss_pred             hhcCCceEeCcEEEECCCee
Confidence            99999999999999999984

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=100.00  E-value=6.8e-51  Score=387.12  Aligned_cols=351  Identities=28%  Similarity=0.465  Sum_probs=266.9

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEE----cCCChhhhhhcCcc
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFV----QENKIPSILSCLPR   76 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~----~~~~~~~~~~~~~~   76 (415)
                      |+++|+++||+|+++++|+++++++++||+++|++++||+|.++.+++.++++.++++++|+    +......+......
T Consensus        38 L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~~  117 (417)
T PF00501_consen   38 LRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAIPVPLDPSLSEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIFKQ  117 (417)
T ss_dssp             HHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-EEEEEETTSSHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHHTT
T ss_pred             HHHhCCCccccccccCCccceeeeeecccccccccccccccccccccccccccccceeEEEEeccccccccccchhhhcc
Confidence            35679999999999999999999999999999999999999999999999999999999997    22222222222221


Q ss_pred             CCCCccEEEEecCCCchhhHHhhhcCceeecHHHHHhcC-CCCCCCCC-CCCCCeEEEEecCCCCCCCceEEeecHHHHH
Q 014951           77 CCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLG-TLDCELPP-KKKTNISTIMYTSGTTGEPKGVVLTNQAIVA  154 (415)
Q Consensus        77 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~  154 (415)
                      . .....++.++.......             +.+.... ..... .+ ..++++++++|||||||.||+|.++|++++.
T Consensus       118 ~-~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~-~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~  182 (417)
T PF00501_consen  118 E-DPSSSIIILDRDDLPKK-------------EALKSASLSDEPQ-SPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLA  182 (417)
T ss_dssp             S-TTTEEEEEESHSSCTTC-------------HHHHHHHHCHCSH-STTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHH
T ss_pred             c-ccccccccccccccccc-------------ccccccccccccc-cCCCCccceeEeeccccccccccccccccccccc
Confidence            1 23345555553321110             0000000 00000 00 0568999999999999999999999999999


Q ss_pred             HhhhhhhhhhhccccCCCCCEEEEeCChhhHHHH-HHHHHhhhcCcEEEEeCC-C---HHHHHHHHHhhCCeEEEeCcHH
Q 014951          155 EVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ-IIETHCIHKGCSIGFWRG-D---VRYLMEDIQELKPTMFSGVPRV  229 (415)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~vv~~~~-~---~~~~~~~i~~~~~t~~~~~P~~  229 (415)
                      .+..+.  +... ..++  |++++++|++|.+++ ..++.+++.|+++++.+. .   +..+++.+++++||+++++|++
T Consensus       183 ~~~~~~--~~~~-~~~~--d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~  257 (417)
T PF00501_consen  183 QARALA--LPEY-FGLG--DRILSFLPLSHIFGLISALLAALFSGATLVLPSPFDLFDPESLLELISRYKPTILFAVPSM  257 (417)
T ss_dssp             HHHHHH--HHHT-TTTT--TEEEESS-TTSHHHHHHHHHHHHHCTSEEEEESSHHHHHHHHHHHHHHHHTESEEEEEHHH
T ss_pred             cccccc--cccc-cccC--ceEEeeccccccccccccccccccccccccccccccccccccchhcccccccccccccccc
Confidence            988754  1100 1222  699999999999999 578999999999999987 2   5778999999999999999999


Q ss_pred             HHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHH
Q 014951          230 YDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEF  309 (415)
Q Consensus       230 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~  309 (415)
                      ++.+++ .......                                ....        ..+++|.++++|+++++++.++
T Consensus       258 l~~l~~-~~~~~~~--------------------------------~~~~--------~l~~lr~v~~~G~~l~~~~~~~  296 (417)
T PF00501_consen  258 LEALLQ-SPEEKTK--------------------------------ISKK--------DLSSLRTVISGGEPLPPDLLRR  296 (417)
T ss_dssp             HHHHHH-HHHTTHH--------------------------------GTTT--------TGTT-SEEEEESST-CHHHHHH
T ss_pred             cccccc-ccccccc--------------------------------cccc--------ccccccccccccccCChhhccc
Confidence            999876 2111000                                0000        1136999999999999999999


Q ss_pred             HHHhcCC-ceEEeeccCCCCceeeeec-CCcccccCcccccccCeEEEEeecCC-CCCCCCCCCCCCeEEEecCCccccc
Q 014951          310 LRVTSGA-PLTQGYGLTESCSGCFTSL-ADVFNMIGTVGVPMTTVEARLESVPE-MGYDALSSVPRGEICLRGNTLFSGY  386 (415)
Q Consensus       310 ~~~~~~~-~~~~~yG~tE~~~~~~~~~-~~~~~~~~~~G~~~~g~~~~i~~~~~-~~~~~~~~~~~Gel~v~~~~~~~gY  386 (415)
                      +++.++. ++++.||+||++.+++... .......+++|.|+||++++|+| ++ +.  +++.|+.|||+++||.++.||
T Consensus       297 ~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd-~~~~~--~~~~g~~Gei~i~~~~~~~gy  373 (417)
T PF00501_consen  297 LRKAFGNAPIINLYGSTETGSIATIRPPEDDIEKPGSVGKPLPGVEVKIVD-PNTGE--PLPPGEPGEIVIRGPNVFSGY  373 (417)
T ss_dssp             HHHHHTTSEEEEEEEEGGGSSEEEEEETTTHHSSTTSEBEESTTEEEEEEC-TTTSS--BESTTSEEEEEEESTTSBSEE
T ss_pred             cccccccccceecccccccceeeeccccccccccccccccccccccccccc-ccccc--cccccccccccccCCccceee
Confidence            9999987 9999999999999887663 23333458899999999999999 55 54  446779999999999999999


Q ss_pred             cCCchhhhhhhcC-CceecCceEEEcCCCC
Q 014951          387 YKRPDLTEEVIVD-GWFHTGDIGEWQPMEL  415 (415)
Q Consensus       387 ~~~~~~~~~~~~~-g~~~TGDlg~~d~~G~  415 (415)
                      +++++.+.++|.+ |||+|||+|++|+||+
T Consensus       374 ~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~  403 (417)
T PF00501_consen  374 YNDPELTAEAFIDDGWYRTGDLGRLDEDGY  403 (417)
T ss_dssp             TTBHHHHHHHEETTSEEEEEEEEEEETTSE
T ss_pred             eccccccccccccccceecceEEEECCCCe
Confidence            9999999999954 8999999999999985

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=100.00  E-value=6.9e-50  Score=396.87  Aligned_cols=345  Identities=19%  Similarity=0.352  Sum_probs=262.8

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCC-----HHHHHHHHHhcCceEEEEcCCC--hhhhhhc
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG-----ANAVEFIINHAEVSIAFVQENK--IPSILSC   73 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~-----~~~l~~~l~~~~~~~ii~~~~~--~~~~~~~   73 (415)
                      |.+.|+++||+|+++++|+++++++++||+++|++++|+++.++     .+++.+++++++++++|+++..  ...+...
T Consensus        86 L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~  165 (614)
T PRK08180         86 LLDRGLSAERPLMILSGNSIEHALLALAAMYAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAV  165 (614)
T ss_pred             HHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhh
Confidence            45789999999999999999999999999999999999999998     7999999999999999998642  1222111


Q ss_pred             CccCCCCccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCC---CCCCCCCCCCCeEEEEecCCCCCCCceEEeecH
Q 014951           74 LPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTL---DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQ  150 (415)
Q Consensus        74 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~  150 (415)
                      .    .....++..+....         ......++++......   ........++|+++|+|||||||.||||++||+
T Consensus       166 ~----~~~~~~i~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~  232 (614)
T PRK08180        166 V----PADVEVVAVRGAVP---------GRAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHR  232 (614)
T ss_pred             c----cCCceEEEecCCCC---------CcccccHHHHhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehH
Confidence            1    11112333222100         0012345555433211   111123467899999999999999999999999


Q ss_pred             HHHHHhhhhhhhhhhccccC--CCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC-----CHHHHHHHHHhhCCeE
Q 014951          151 AIVAEVLSVDQMFVVTGKVC--SEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTM  222 (415)
Q Consensus       151 ~l~~~~~~~~~~~~~~~~~~--~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~-----~~~~~~~~i~~~~~t~  222 (415)
                      ++..+.......+     ..  ...+++++++|++|.+++.. ++.+++.|+++++.+.     ...++++.++++++|+
T Consensus       233 ~l~~~~~~~~~~~-----~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~  307 (614)
T PRK08180        233 MLCANQQMLAQTF-----PFLAEEPPVLVDWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTV  307 (614)
T ss_pred             HHHHHHHHHHhhc-----cccCCCCcEEEEecchHHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcE
Confidence            9998877655544     32  25689999999999999864 6678999999998752     3457888999999999


Q ss_pred             EEeCcHHHHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCC
Q 014951          223 FSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPL  302 (415)
Q Consensus       223 ~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~  302 (415)
                      ++++|.++..+++.+....                                 .        .+....+++|.+++||+++
T Consensus       308 ~~~vP~~~~~l~~~~~~~~---------------------------------~--------~~~~~~~~lr~v~~gGa~l  346 (614)
T PRK08180        308 YFNVPKGWEMLVPALERDA---------------------------------A--------LRRRFFSRLKLLFYAGAAL  346 (614)
T ss_pred             EechHHHHHHHHHHHHhch---------------------------------h--------hhhhhccceeEEEEccCCC
Confidence            9999999999876432110                                 0        0111124899999999999


Q ss_pred             CHHHHHHHHHh----cC--CceEEeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEE
Q 014951          303 PIHVEEFLRVT----SG--APLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEIC  376 (415)
Q Consensus       303 ~~~~~~~~~~~----~~--~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~  376 (415)
                      ++++.+++.+.    ++  +++++.||+||++.+++...... ...+++|+|++|++++|++ +         +..|||+
T Consensus       347 ~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~~-~~~~svG~p~pg~~v~i~d-~---------~~~GEi~  415 (614)
T PRK08180        347 SQDVWDRLDRVAEATCGERIRMMTGLGMTETAPSATFTTGPL-SRAGNIGLPAPGCEVKLVP-V---------GGKLEVR  415 (614)
T ss_pred             CHHHHHHHHHHHHhhcCCCceeeeeecccccCCceEeccccc-CCCCcccCccCCcEEEEec-C---------CCCcEEE
Confidence            99999998874    33  67999999999987665543332 3458999999999999988 3         2469999


Q ss_pred             EecCCccccccCCchhhhhhh-cCCceecCceEEE----cCCCC
Q 014951          377 LRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEW----QPMEL  415 (415)
Q Consensus       377 v~~~~~~~gY~~~~~~~~~~~-~~g~~~TGDlg~~----d~~G~  415 (415)
                      ++||+++.|||++|+.|.+.| .||||+|||+|++    |+||+
T Consensus       416 vrg~~v~~GY~~~p~~t~~~~~~dgw~~TGDlg~~~~~~d~~g~  459 (614)
T PRK08180        416 VKGPNVTPGYWRAPELTAEAFDEEGYYRSGDAVRFVDPADPERG  459 (614)
T ss_pred             EecCccchhhcCChhHhHhhcccCCceeccceEEecCCcCCCCc
Confidence            999999999999999999999 5899999999999    45664

>PRK07529 AMP-binding domain protein; Validated

Probab=100.00  E-value=7e-50  Score=397.57  Aligned_cols=361  Identities=23%  Similarity=0.326  Sum_probs=277.4

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCCh-----hhhhhcCc
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI-----PSILSCLP   75 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~   75 (415)
                      |++.|+++||+|+++++|++++++++|||+++| +++||++.++++++.++++.++++++|++....     ..+.....
T Consensus        75 L~~~Gi~~gd~V~i~~~n~~e~~~~~lA~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~  153 (632)
T PRK07529         75 LHSLGVGPGDVVAFLLPNLPETHFALWGGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLA  153 (632)
T ss_pred             HHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHh
Confidence            456899999999999999999999999999999 579999999999999999999999999986542     22222222


Q ss_pred             cCCCCccEEEEecCCCchhh--HHh-----hhcCceeecHHHHHhcCCCC--CCCCCCCCCCeEEEEecCCCCCCCceEE
Q 014951           76 RCCLYLKTIVSFANVSSSQK--KEA-----EELGVSCFSWEEFLQLGTLD--CELPPKKKTNISTIMYTSGTTGEPKGVV  146 (415)
Q Consensus        76 ~~~~~~~~v~~~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~TSGtTG~pK~v~  146 (415)
                      . .+..+.++.++.......  ...     ......+..+.+.+......  .......++++++++|||||||.||+|.
T Consensus       154 ~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~  232 (632)
T PRK07529        154 A-LPELRTVVEVDLARYLPGPKRLAVPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQ  232 (632)
T ss_pred             c-CCcceeEEEecCcccccccccccccccccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEE
Confidence            1 244556665543210000  000     00112344566655443211  1122346799999999999999999999


Q ss_pred             eecHHHHHHhhhhhhhhhhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC----C---HHHHHHHHHhh
Q 014951          147 LTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG----D---VRYLMEDIQEL  218 (415)
Q Consensus       147 ~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~----~---~~~~~~~i~~~  218 (415)
                      +||.++..+.......+     .+.++|++++.+|++|.++... ++.++..|+++++.+.    +   ...+++.++++
T Consensus       233 ~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~  307 (632)
T PRK07529        233 HTHGNEVANAWLGALLL-----GLGPGDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERY  307 (632)
T ss_pred             EcHHHHHHHHHHHHHhc-----CCCCCCEEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHh
Confidence            99999998877655554     5678999999999999999875 7788999999999753    2   36888999999


Q ss_pred             CCeEEEeCcHHHHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEe
Q 014951          219 KPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSG  298 (415)
Q Consensus       219 ~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~  298 (415)
                      ++|++.++|+++..+++...                                      ...++        +++|.+++|
T Consensus       308 ~vt~~~~~P~~~~~l~~~~~--------------------------------------~~~~~--------~slr~v~~g  341 (632)
T PRK07529        308 RINFLSGVPTVYAALLQVPV--------------------------------------DGHDI--------SSLRYALCG  341 (632)
T ss_pred             CCeEEEeHHHHHHHHHhCcc--------------------------------------cCCCc--------cceEEEEEc
Confidence            99999999999998764100                                      00011        489999999


Q ss_pred             cCCCCHHHHHHHHHhcCCceEEeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCC--CCCCCCCCCeEE
Q 014951          299 AAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGY--DALSSVPRGEIC  376 (415)
Q Consensus       299 G~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~--~~~~~~~~Gel~  376 (415)
                      |+++++++.+++++.++.++++.||+||++.++.....+.....+++|.|+|+++++|+..++++.  .+++.|+.|||+
T Consensus       342 g~~l~~~l~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~~Gel~  421 (632)
T PRK07529        342 AAPLPVEVFRRFEAATGVRIVEGYGLTEATCVSSVNPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLC  421 (632)
T ss_pred             CCCCCHHHHHHHHHHhCCcEeeeecccccCcccccCCccccccCCCcccccCCceEEEEEcCCCCcccccCCCCCceEEE
Confidence            999999999999999999999999999998777665544344568999999999999975333331  456778999999


Q ss_pred             EecCCccccccCCchhhhhhh-cCCceecCceEEEcCCCC
Q 014951          377 LRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       377 v~~~~~~~gY~~~~~~~~~~~-~~g~~~TGDlg~~d~~G~  415 (415)
                      |+||+++.||++++. +...| .+|||+|||+|++|+||+
T Consensus       422 v~gp~v~~GY~~~~~-~~~~~~~~gw~~TGDlg~~d~dG~  460 (632)
T PRK07529        422 IAGPNVFSGYLEAAH-NKGLWLEDGWLNTGDLGRIDADGY  460 (632)
T ss_pred             EECCCccccccCCcc-ccccccCCCceEcCcEEEEcCCce
Confidence            999999999998654 45555 789999999999999985

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=100.00  E-value=7.1e-50  Score=398.27  Aligned_cols=360  Identities=19%  Similarity=0.267  Sum_probs=276.6

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCCh---------hhhh
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI---------PSIL   71 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~   71 (415)
                      |++.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.+++++++++++|+++...         ..+.
T Consensus       105 L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~  184 (625)
T TIGR02188       105 LKSLGVKKGDRVAIYMPMIPEAAIAMLACARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVD  184 (625)
T ss_pred             HHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHH
Confidence            4578999999999999999999999999999999999999999999999999999999999987532         1222


Q ss_pred             hcCccCCC-CccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecH
Q 014951           72 SCLPRCCL-YLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQ  150 (415)
Q Consensus        72 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~  150 (415)
                      ...... + .++.++.++....... .   .......++++..............++++++|+|||||||.||||+++|.
T Consensus       185 ~~~~~~-~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~  259 (625)
T TIGR02188       185 EALEKC-PVSVEHVLVVRRTGNPVP-W---VEGRDVWWHDLMAKASAYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTG  259 (625)
T ss_pred             HHHHhC-CCCccEEEEEcCCCCCcC-c---cccccccHHHHHhhcCCCCCceecCCCCceEEEecCCCCCCCCeEEECcc
Confidence            222111 2 3455665543221100 0   00112335555543322223345677899999999999999999999999


Q ss_pred             HHHHHhhhh-hhhhhhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC-----CHHHHHHHHHhhCCeEE
Q 014951          151 AIVAEVLSV-DQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMF  223 (415)
Q Consensus       151 ~l~~~~~~~-~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~-----~~~~~~~~i~~~~~t~~  223 (415)
                      +++...... ...+     .+.++|++++..|++|..+... ++.+++.|+++++.+.     ++..+++.|+++++|++
T Consensus       260 ~~~~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~  334 (625)
T TIGR02188       260 GYLLYAAMTMKYVF-----DIKDGDIFWCTADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIF  334 (625)
T ss_pred             HhHHHHHHHHHhcc-----CCCCCcEEEECCCchhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEE
Confidence            987554332 2222     6678999999999999988764 7788999999998753     78999999999999999


Q ss_pred             EeCcHHHHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCC
Q 014951          224 SGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLP  303 (415)
Q Consensus       224 ~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~  303 (415)
                      +++|++++.+.+.....                                   ....++        ++||.++++|++++
T Consensus       335 ~~~P~~~~~l~~~~~~~-----------------------------------~~~~~l--------~~lr~i~~~G~~l~  371 (625)
T TIGR02188       335 YTAPTAIRALMRLGDEW-----------------------------------VKKHDL--------SSLRLLGSVGEPIN  371 (625)
T ss_pred             EeCHHHHHHHHhcCCcc-----------------------------------cccCCc--------cceeEEEEecCCCC
Confidence            99999999876521100                                   000111        48999999999999


Q ss_pred             HHHHHHHHHhcC---CceEEeeccCCCCceeeeecCCc-ccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEec
Q 014951          304 IHVEEFLRVTSG---APLTQGYGLTESCSGCFTSLADV-FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRG  379 (415)
Q Consensus       304 ~~~~~~~~~~~~---~~~~~~yG~tE~~~~~~~~~~~~-~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~  379 (415)
                      +++.+++.+.++   +++++.||+||+++.+....+.. ..+++++|+|++|++++|+| +++..++ +.|+.|||++++
T Consensus       372 ~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~g~~~~-~~g~~GeL~v~~  449 (625)
T TIGR02188       372 PEAWMWYYKVVGKERCPIVDTWWQTETGGIMITPLPGATPTKPGSATLPFFGIEPAVVD-EEGNPVE-GPGEGGYLVIKQ  449 (625)
T ss_pred             HHHHHHHHHHcCCCCCceEecccccccCCceeecCCCCCCcCCCcccCCcCCceEEEEC-CCCCCCC-CCCCeEEEEEcc
Confidence            999999998885   68999999999987765543321 23458999999999999999 7776443 267899999999


Q ss_pred             --CCccccccCCchhhhhhh---cCCceecCceEEEcCCCC
Q 014951          380 --NTLFSGYYKRPDLTEEVI---VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       380 --~~~~~gY~~~~~~~~~~~---~~g~~~TGDlg~~d~~G~  415 (415)
                        |+++.|||++++.+.+.+   .+|||+|||+|++|+||+
T Consensus       450 p~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~  490 (625)
T TIGR02188       450 PWPGMLRTIYGDHERFVDTYFSPFPGYYFTGDGARRDKDGY  490 (625)
T ss_pred             CCCcccccccCChHHHHHHHhccCCCEEECCceEEEcCCCc
Confidence              689999999998887776   378999999999999995

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK07788 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.2e-50  Score=392.42  Aligned_cols=351  Identities=19%  Similarity=0.218  Sum_probs=277.9

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |.+.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.+++++++++++|++.+....+...... ...
T Consensus        91 L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~-~~~  169 (549)
T PRK07788         91 LLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPPD-LGR  169 (549)
T ss_pred             HHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhccc-ccc
Confidence            4567999999999999999999999999999999999999999999999999999999999998876665443221 122


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD  160 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~  160 (415)
                      +..++.......       ........++++......  ...+...+++++++|||||||.||+|.++|+++...+....
T Consensus       170 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~  240 (549)
T PRK07788        170 LRAWGGNPDDDE-------PSGSTDETLDDLIAGSST--APLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLL  240 (549)
T ss_pred             ceEEEEecCccc-------cCCcCcccHHHHhcCCCC--CCCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHH
Confidence            233222211110       011234566766654321  11233457889999999999999999999999998877655


Q ss_pred             hhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHHH
Q 014951          161 QMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISN  239 (415)
Q Consensus       161 ~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~  239 (415)
                      ..+     .+..+|+++...|++|.+++...+.+++.|+++++.+. ++..+++.+++++||++.++|+++..+++....
T Consensus       241 ~~~-----~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~  315 (549)
T PRK07788        241 SRV-----PFRAGETTLLPAPMFHATGWAHLTLAMALGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPE  315 (549)
T ss_pred             hhC-----CCCcCCeEEEccchHHHHHHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCccc
Confidence            544     67788999999999999999877788999999988765 999999999999999999999999988652211


Q ss_pred             hhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCCceE
Q 014951          240 KISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLT  319 (415)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~~  319 (415)
                      ..                                   ...+        .+++|.+++||+++++++.+++.+.++..++
T Consensus       316 ~~-----------------------------------~~~~--------~~~lr~i~~gG~~l~~~~~~~~~~~~~~~l~  352 (549)
T PRK07788        316 VL-----------------------------------AKYD--------TSSLKIIFVSGSALSPELATRALEAFGPVLY  352 (549)
T ss_pred             cc-----------------------------------CCCC--------CCceeEEEEeCCCCCHHHHHHHHHHhCccce
Confidence            00                                   0000        1489999999999999999999999999999


Q ss_pred             EeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhhhhhhcC
Q 014951          320 QGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVD  399 (415)
Q Consensus       320 ~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~~~~~~  399 (415)
                      +.||+||++..+.....+.....+++|+|+++++++|+| +++..+  +.|+.|||+++|+.++.||+++++.   ...+
T Consensus       353 ~~YG~TE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d-~~~~~~--~~g~~Gel~v~g~~~~~gY~~~~~~---~~~~  426 (549)
T PRK07788        353 NLYGSTEVAFATIATPEDLAEAPGTVGRPPKGVTVKILD-ENGNEV--PRGVVGRIFVGNGFPFEGYTDGRDK---QIID  426 (549)
T ss_pred             eccCcchhchhhccChhhhhhcCCCcccCCCCcEEEEEC-CCcCCC--CCCCeEEEEEeCCCccccccCCCcc---cccC
Confidence            999999998665544333233458899999999999999 776544  4579999999999999999998765   3358


Q ss_pred             CceecCceEEEcCCCC
Q 014951          400 GWFHTGDIGEWQPMEL  415 (415)
Q Consensus       400 g~~~TGDlg~~d~~G~  415 (415)
                      |||+|||+|++|+||+
T Consensus       427 g~~~TGDl~~~~~~g~  442 (549)
T PRK07788        427 GLLSSGDVGYFDEDGL  442 (549)
T ss_pred             CceecCceEEEcCCCC
Confidence            9999999999999985

>PLN02574 4-coumarate--CoA ligase-like

Probab=100.00  E-value=1.2e-49  Score=391.72  Aligned_cols=356  Identities=22%  Similarity=0.298  Sum_probs=273.6

Q ss_pred             cc-CCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            2 RS-RGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         2 ~~-~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      .+ +|+++||+|+++++|++++++++|||+++|++++|++|..+.+++.++++.++++++|++.+..+.+....      
T Consensus        84 ~~~~G~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~------  157 (560)
T PLN02574         84 YHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPLG------  157 (560)
T ss_pred             HHHhCCCCCCEEEEECCCcchHHHHHHHHHHhCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhcC------
Confidence            44 89999999999999999999999999999999999999999999999999999999999987655543211      


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD  160 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~  160 (415)
                      . .++.++......     ........++++..........+...++++++++|||||||.||+|++||+++...+..+.
T Consensus       158 ~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~  231 (560)
T PLN02574        158 V-PVIGVPENYDFD-----SKRIEFPKFYELIKEDFDFVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFV  231 (560)
T ss_pred             C-cEEecCcccccc-----cCccCcccHHHHhhcCCcccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHH
Confidence            1 122222110000     0001223455554433222223345678999999999999999999999999998776543


Q ss_pred             hhhhhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHH
Q 014951          161 QMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGIS  238 (415)
Q Consensus       161 ~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  238 (415)
                      .............++++..+|++|.+++.. ++.++..|+++++.+. ++..+++.|+++++|++.++|+++..+++...
T Consensus       232 ~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  311 (560)
T PLN02574        232 RFEASQYEYPGSDNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAK  311 (560)
T ss_pred             hccccccccCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCcc
Confidence            211100112235688999999999999875 5567888999988876 99999999999999999999999998865211


Q ss_pred             HhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhc-CCc
Q 014951          239 NKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAP  317 (415)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~-~~~  317 (415)
                      .                                    ....+        .+++|.+++||+++++++.+++.+.+ +.+
T Consensus       312 ~------------------------------------~~~~~--------~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~  347 (560)
T PLN02574        312 G------------------------------------VCGEV--------LKSLKQVSCGAAPLSGKFIQDFVQTLPHVD  347 (560)
T ss_pred             c------------------------------------cccCc--------cccceEEEEecccCCHHHHHHHHHHCCCCc
Confidence            0                                    00001        13799999999999999999998887 689


Q ss_pred             eEEeeccCCCCceeeeecC-CcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhhhhh
Q 014951          318 LTQGYGLTESCSGCFTSLA-DVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEV  396 (415)
Q Consensus       318 ~~~~yG~tE~~~~~~~~~~-~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~~~  396 (415)
                      +++.||+||++.++..... ......+++|+|+++++++|+|.+++  .+++.|+.|||+|+|++++.||+++++.+.+.
T Consensus       348 v~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~g--~~~~~g~~Gei~v~g~~~~~GY~~~~~~t~~~  425 (560)
T PLN02574        348 FIQGYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTG--CLLPPGNCGELWIQGPGVMKGYLNNPKATQST  425 (560)
T ss_pred             EEecccccccCceeecCCCccccCCCCceeeeCCCcEEEEEeCCCC--cCCCCCCCeEEEEECcchhhhhcCChhHhhhh
Confidence            9999999999866543222 22234589999999999999993344  45667799999999999999999999999988


Q ss_pred             h-cCCceecCceEEEcCCCC
Q 014951          397 I-VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       397 ~-~~g~~~TGDlg~~d~~G~  415 (415)
                      | .+|||+|||+|++|+||+
T Consensus       426 ~~~~g~~~TGDlg~~~~~G~  445 (560)
T PLN02574        426 IDKDGWLRTGDIAYFDEDGY  445 (560)
T ss_pred             ccCCCCcccceEEEEECCCe
Confidence            8 689999999999999985

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=100.00  E-value=2.2e-49  Score=394.24  Aligned_cols=360  Identities=16%  Similarity=0.175  Sum_probs=271.7

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCCh---------hhhh
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI---------PSIL   71 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~   71 (415)
                      |++.|+++||+|+++++|+++++++++||+++|++++|+++.++++++..++++++++++|+++...         +.+.
T Consensus       100 L~~~Gv~~Gd~V~i~~~n~~e~v~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~  179 (628)
T TIGR02316       100 LRALGVGRGDRVLIYMPMIAEAVFAMLACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLD  179 (628)
T ss_pred             HHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHH
Confidence            4678999999999999999999999999999999999999999999999999999999999986431         1111


Q ss_pred             hcCccCCCCccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCC-CCCCCCCCCCCCeEEEEecCCCCCCCceEEeecH
Q 014951           72 SCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQ  150 (415)
Q Consensus        72 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~  150 (415)
                      .+..........++.++.......    ........+.++..... ...+.....++++++|+|||||||.||||+++|.
T Consensus       180 ~~~~~~~~~~~~vi~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~  255 (628)
T TIGR02316       180 AAIAEAQHPPPHVLLVDRGLAPMR----LIPGRDVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVG  255 (628)
T ss_pred             HHHHhcCCCCCEEEEEeCCCCCcC----cccCccccHHHHhhccccCCCCceecCCCCcEEEEECCCCCCCCceEEECCc
Confidence            111111123445666653211000    00011234555544321 1122233567999999999999999999999999


Q ss_pred             HHHHHh-hhhhhhhhhccccCCCCCEEEEeCChhhHHHHH-HHHHhhhcCcEEEEeCC-----CHHHHHHHHHhhCCeEE
Q 014951          151 AIVAEV-LSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQI-IETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMF  223 (415)
Q Consensus       151 ~l~~~~-~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~vv~~~~-----~~~~~~~~i~~~~~t~~  223 (415)
                      +++.+. ......+     .++++|++++..|++|..+.. .++.+++.|+++++.+.     ++..+++.|+++++|++
T Consensus       256 ~~~~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~  330 (628)
T TIGR02316       256 GYAVALALSMWAIF-----GIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTM  330 (628)
T ss_pred             HHHHHHHHHHHHhc-----CCCCCcEEEEcCCCCeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEE
Confidence            986443 3333333     677899999999999998875 47788999999998763     78999999999999999


Q ss_pred             EeCcHHHHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCC
Q 014951          224 SGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLP  303 (415)
Q Consensus       224 ~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~  303 (415)
                      +++|++++.+.+....                                   .....++        ++||.+++||++++
T Consensus       331 ~~~P~~~~~l~~~~~~-----------------------------------~~~~~~l--------~~lr~~~~gGe~l~  367 (628)
T TIGR02316       331 FSAPTAIRVLKKQDAA-----------------------------------WLRKHDL--------SSLHWLFLAGEPLD  367 (628)
T ss_pred             EeCHHHHHHHHhcCCc-----------------------------------ccccCCc--------cceeEEEEecCCCC
Confidence            9999999887541100                                   0001111        48999999999999


Q ss_pred             HHHHHHHHHhcCCceEEeeccCCCCceeeeecCC---cccccCcccccccCeEEEEeecC-CCCCCCCCCCCCCeEEEec
Q 014951          304 IHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLAD---VFNMIGTVGVPMTTVEARLESVP-EMGYDALSSVPRGEICLRG  379 (415)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~---~~~~~~~~G~~~~g~~~~i~~~~-~~~~~~~~~~~~Gel~v~~  379 (415)
                      +++.+++++.++..+++.||+||++..++.....   .....+++|+|++|++++|+| + ++.  +++.++.|||+++|
T Consensus       368 ~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~~g~--~~~~g~~Gel~v~g  444 (628)
T TIGR02316       368 EPTAHWITDGLGKPVIDNYWQTETGWPVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLD-EATGR--PCGPNEKGVLTVVP  444 (628)
T ss_pred             HHHHHHHHHHhCCCEEecccccccCceeecCCCCCCcCCCCCCCcccCcCCceEEEEE-CCCCC--CCCCCCcEEEEEec
Confidence            9999999998999999999999998644332221   122348899999999999999 5 454  44567999999999


Q ss_pred             C---CccccccCCchhhhhhh----cCCceecCceEEEcCCCC
Q 014951          380 N---TLFSGYYKRPDLTEEVI----VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       380 ~---~~~~gY~~~~~~~~~~~----~~g~~~TGDlg~~d~~G~  415 (415)
                      |   +++.|||++++.+.+.+    .++||+|||+|++|+||+
T Consensus       445 p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~dG~  487 (628)
T TIGR02316       445 PLPPGCLSTVWGDDARFLKTYWSHFKRPLYSSFDWGIRDEDGY  487 (628)
T ss_pred             CCCccccccccCChHHHHHhhhhcCCCCEEECCceEEEcCCCc
Confidence            8   57899999998777654    477999999999999996

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.6e-49  Score=393.83  Aligned_cols=359  Identities=19%  Similarity=0.273  Sum_probs=275.4

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCCh---------hhhh
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI---------PSIL   71 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~   71 (415)
                      |++.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++...         +.+.
T Consensus       115 L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~  194 (637)
T PRK00174        115 LKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAVHSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVD  194 (637)
T ss_pred             HHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHH
Confidence            4578999999999999999999999999999999999999999999999999999999999987542         1121


Q ss_pred             hcCccCCCCccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHH
Q 014951           72 SCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQA  151 (415)
Q Consensus        72 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~  151 (415)
                      ..... .+..+.++.++.......    ........++++..............++++++|+|||||||.||+|+++|.+
T Consensus       195 ~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~  269 (637)
T PRK00174        195 EALAN-CPSVEKVIVVRRTGGDVD----WVEGRDLWWHELVAGASDECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGG  269 (637)
T ss_pred             HHHHh-CCCccEEEEEcCCCCCcC----cCCCCcccHHHHHhhcCCCCCccccCCCCcEEEEECCCCCCCCceEEeCcch
Confidence            11111 134455655543211000    0001123355555432222233345678999999999999999999999999


Q ss_pred             HHHHhhhh-hhhhhhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC-----CHHHHHHHHHhhCCeEEE
Q 014951          152 IVAEVLSV-DQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFS  224 (415)
Q Consensus       152 l~~~~~~~-~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~-----~~~~~~~~i~~~~~t~~~  224 (415)
                      ++...... ...+     .+..+|++++..|++|..+... ++.+++.|+++++.+.     ++..+++.|+++++|++.
T Consensus       270 ~~~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~  344 (637)
T PRK00174        270 YLVYAAMTMKYVF-----DYKDGDVYWCTADVGWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFY  344 (637)
T ss_pred             hHHHHHHHHHhcc-----CCCCCcEEEEcCCchHhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEe
Confidence            87654332 2223     6678899999999999988764 7788999999998753     789999999999999999


Q ss_pred             eCcHHHHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCH
Q 014951          225 GVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPI  304 (415)
Q Consensus       225 ~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~  304 (415)
                      ++|++++.+++.....                                   ....++        ++||.++++|+++++
T Consensus       345 ~~P~~~~~l~~~~~~~-----------------------------------~~~~~~--------~~lr~i~~~Ge~l~~  381 (637)
T PRK00174        345 TAPTAIRALMKEGDEH-----------------------------------PKKYDL--------SSLRLLGSVGEPINP  381 (637)
T ss_pred             ecHHHHHHHHhcCCcc-----------------------------------cccCCc--------cceeEEEEeCCCCCH
Confidence            9999999876521000                                   000011        389999999999999


Q ss_pred             HHHHHHHHhcC---CceEEeeccCCCCceeeeecCCc-ccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEec-
Q 014951          305 HVEEFLRVTSG---APLTQGYGLTESCSGCFTSLADV-FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRG-  379 (415)
Q Consensus       305 ~~~~~~~~~~~---~~~~~~yG~tE~~~~~~~~~~~~-~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~-  379 (415)
                      ++.+++.+.++   +++++.||+||++..+....+.. ..+.+++|+|++|++++|+| +++..+  +.|+.|||+++| 
T Consensus       382 ~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~vG~p~~g~~~~i~d-~~g~~~--~~g~~Gel~v~g~  458 (637)
T PRK00174        382 EAWEWYYKVVGGERCPIVDTWWQTETGGIMITPLPGATPLKPGSATRPLPGIQPAVVD-EEGNPL--EGGEGGNLVIKDP  458 (637)
T ss_pred             HHHHHHHHHhCCCCCceEecccccccCCceEecCCCCCCcCCCcccCCCCCceEEEEC-CCCCCC--CCCCcEEEEEcCC
Confidence            99999998876   68999999999988665443322 22347899999999999999 777544  456999999999 


Q ss_pred             -CCccccccCCchhhhhhh---cCCceecCceEEEcCCCC
Q 014951          380 -NTLFSGYYKRPDLTEEVI---VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       380 -~~~~~gY~~~~~~~~~~~---~~g~~~TGDlg~~d~~G~  415 (415)
                       |+++.|||++++.+.+.+   .+|||+|||+|++|+||+
T Consensus       459 ~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~  498 (637)
T PRK00174        459 WPGMMRTIYGDHERFVKTYFSTFKGMYFTGDGARRDEDGY  498 (637)
T ss_pred             CCcccccccCCHHHHHHhhhcCCCCEEECCceEEEcCCCc
Confidence             689999999999887765   479999999999999995

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=100.00  E-value=1.9e-48  Score=382.34  Aligned_cols=347  Identities=24%  Similarity=0.322  Sum_probs=275.8

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCCh-----hhhhhcCc
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI-----PSILSCLP   75 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~   75 (415)
                      |.+.|+++||+|+++++|++++++++|||+++|++++|++|.++.+++.++++.++++++|++++..     +.+.....
T Consensus        72 L~~~g~~~g~~Val~~~n~~e~~~~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~  151 (547)
T PRK13295         72 LARLGVGRGDVVSCQLPNWWEFTVLYLACSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRP  151 (547)
T ss_pred             HHHhCCCCCCEEEEECCCChHHHHHHHHHHhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhh
Confidence            3567999999999999999999999999999999999999999999999999999999999987642     11211111


Q ss_pred             cCCCCccEEEEecCCCchhhHHhhhcCceeecHHHHHhcC--------CCCCCCCCCCCCCeEEEEecCCCCCCCceEEe
Q 014951           76 RCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLG--------TLDCELPPKKKTNISTIMYTSGTTGEPKGVVL  147 (415)
Q Consensus        76 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~  147 (415)
                       ..+..+.++.++...             ..++.++....        ..........++++++++|||||||.||+|++
T Consensus       152 -~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~  217 (547)
T PRK13295        152 -ELPALRHVVVVGGDG-------------ADSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMH  217 (547)
T ss_pred             -hCCCcceEEEecCCC-------------ccCHHHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEe
Confidence             123445555554321             11233322111        00111123456899999999999999999999


Q ss_pred             ecHHHHHHhhhhhhhhhhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEe
Q 014951          148 TNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSG  225 (415)
Q Consensus       148 th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~  225 (415)
                      +|.++...+......+     .+..++++++..|++|..++.. ++.+++.|+++++.+. ++..+++.++++++|++.+
T Consensus       218 s~~~l~~~~~~~~~~~-----~~~~~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~  292 (547)
T PRK13295        218 TANTLMANIVPYAERL-----GLGADDVILMASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMA  292 (547)
T ss_pred             ccHHHHHHHHHHHHHh-----CCCCCCeEEEecCchhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEe
Confidence            9999998887766555     6788999999999999998775 7788999999998876 9999999999999999999


Q ss_pred             CcHHHHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHH
Q 014951          226 VPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIH  305 (415)
Q Consensus       226 ~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~  305 (415)
                      +|+++..+.......                                     ..+        .+++|.+++||++++++
T Consensus       293 ~p~~~~~l~~~~~~~-------------------------------------~~~--------~~~l~~~~~~G~~l~~~  327 (547)
T PRK13295        293 STPFLTDLTRAVKES-------------------------------------GRP--------VSSLRTFLCAGAPIPGA  327 (547)
T ss_pred             cHHHHHHHHhccccc-------------------------------------CCC--------cccceEEEEecCCCCHH
Confidence            999998876421100                                     000        13799999999999999


Q ss_pred             HHHHHHHhcCCceEEeeccCCCCceeeeecCCc-ccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccc
Q 014951          306 VEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV-FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFS  384 (415)
Q Consensus       306 ~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~-~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~  384 (415)
                      +.+++.+.++.++++.||+||++.+........ .....++|+|+++++++|+| +++.  +++.|+.|||+|+|+.++.
T Consensus       328 ~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d-~~~~--~~~~g~~Gel~v~g~~~~~  404 (547)
T PRK13295        328 LVERARAALGAKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPLPGVEVRVVD-ADGA--PLPAGQIGRLQVRGCSNFG  404 (547)
T ss_pred             HHHHHHHHhCCCeEEeccCCCCCCeeeccCCCcchhccCccccccCCcEEEEEC-CCCC--CCCCCCCCeEEEEcCcccc
Confidence            999999989999999999999987655443322 22346889999999999999 6664  4456799999999999999


Q ss_pred             cccCCchhhhhhhcCCceecCceEEEcCCCC
Q 014951          385 GYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       385 gY~~~~~~~~~~~~~g~~~TGDlg~~d~~G~  415 (415)
                      ||+++++.+... .+|||+|||+|++|+||+
T Consensus       405 gY~~~~~~t~~~-~~g~~~TGD~~~~~~~g~  434 (547)
T PRK13295        405 GYLKRPQLNGTD-ADGWFDTGDLARIDADGY  434 (547)
T ss_pred             cccCCccccccC-CCCCeecceEEEEcCCce
Confidence            999999988776 688999999999999985

>PRK12582 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.5e-48  Score=388.09  Aligned_cols=344  Identities=20%  Similarity=0.344  Sum_probs=256.2

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCH-----HHHHHHHHhcCceEEEEcCCC-hhhhhhcC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGA-----NAVEFIINHAEVSIAFVQENK-IPSILSCL   74 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~-----~~l~~~l~~~~~~~ii~~~~~-~~~~~~~~   74 (415)
                      |++.|+++||+|+++++|+++++++++||+++|++++|++|.++.     +++.++++.++++++|+++.. ........
T Consensus        97 L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~  176 (624)
T PRK12582         97 LLDLGLDPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAAL  176 (624)
T ss_pred             HHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHHhh
Confidence            456899999999999999999999999999999999999999885     899999999999999998642 12212111


Q ss_pred             ccCCCCccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCC---CCCCCCCCCCeEEEEecCCCCCCCceEEeecHH
Q 014951           75 PRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLD---CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQA  151 (415)
Q Consensus        75 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~  151 (415)
                      ..  ... .++.++....         ......++++.......   .......++++++|+|||||||.||||++||++
T Consensus       177 ~~--~~~-~~i~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~  244 (624)
T PRK12582        177 DL--LDV-TVVHVTGPGE---------GIASIAFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRM  244 (624)
T ss_pred             hh--cCc-eEEEEcCCCc---------ccccccHHHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHH
Confidence            11  112 2333332110         01123445544322111   111234678999999999999999999999999


Q ss_pred             HHHHhhhhhhhhhhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC--C---HHHHHHHHHhhCCeEEEe
Q 014951          152 IVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG--D---VRYLMEDIQELKPTMFSG  225 (415)
Q Consensus       152 l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~--~---~~~~~~~i~~~~~t~~~~  225 (415)
                      +..+.......+...  .-...+++++++|++|.+++.. ++.++..|+++++.+.  +   ...+++.++++++|++++
T Consensus       245 l~~~~~~~~~~~~~~--~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~  322 (624)
T PRK12582        245 MCANIAMQEQLRPRE--PDPPPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGN  322 (624)
T ss_pred             HHHHHHHHHHhcccc--CCCCCceEEEechHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEec
Confidence            998776553332110  0013589999999999999875 5677899999988753  2   345677889999999999


Q ss_pred             CcHHHHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHH
Q 014951          226 VPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIH  305 (415)
Q Consensus       226 ~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~  305 (415)
                      +|.++..+++.+...                                 +.....+        .++||.+++||++++++
T Consensus       323 vP~~~~~l~~~~~~~---------------------------------~~~~~~~--------~~slr~i~~gGa~l~~~  361 (624)
T PRK12582        323 VPAGYAMLAEAMEKD---------------------------------DALRRSF--------FKNLRLMAYGGATLSDD  361 (624)
T ss_pred             cCHHHHHHHHHHhhC---------------------------------HHHHHHH--------hhheeEEEecCCCCCHH
Confidence            999999886533210                                 0011111        14899999999999999


Q ss_pred             HHHHHHHhc------CCceEEeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEec
Q 014951          306 VEEFLRVTS------GAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRG  379 (415)
Q Consensus       306 ~~~~~~~~~------~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~  379 (415)
                      +.+++.+.+      ++++++.||+||++.++...... ..+.+++|+|+||++++|++          .|+.|||+|+|
T Consensus       362 ~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~-~~~~~svG~p~pg~~v~i~~----------~G~~GEl~vrg  430 (624)
T PRK12582        362 LYERMQALAVRTTGHRIPFYTGYGATETAPTTTGTHWD-TERVGLIGLPLPGVELKLAP----------VGDKYEVRVKG  430 (624)
T ss_pred             HHHHHHHHHHhhcCCCceEEeccccccccceeecccCC-CCCCCCCCcCCCCcEEEEcc----------CCCceEEEEEC
Confidence            999998753      36799999999998765533222 23458999999999999975          34789999999


Q ss_pred             CCccccccCCchhhhhhh-cCCceecCceEEE
Q 014951          380 NTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEW  410 (415)
Q Consensus       380 ~~~~~gY~~~~~~~~~~~-~~g~~~TGDlg~~  410 (415)
                      ++++.|||++|+.+.+.| .+|||+|||+|++
T Consensus       431 ~~v~~GY~~~p~~t~~~f~~dgw~~TGDlg~~  462 (624)
T PRK12582        431 PNVTPGYHKDPELTAAAFDEEGFYRLGDAARF  462 (624)
T ss_pred             CcccccccCCccchhhhcCccCCccccceEEe
Confidence            999999999999999999 6899999999998

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.5e-48  Score=377.68  Aligned_cols=355  Identities=24%  Similarity=0.410  Sum_probs=288.2

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |.+.|+++||+|+++++|+++++++++||+++|++++|+++..+.+++..++++++++++|+++............ ...
T Consensus        47 L~~~gv~~g~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~-~~~  125 (513)
T PRK07656         47 LAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTR-LPA  125 (513)
T ss_pred             HHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEEEecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHHhc-cCC
Confidence            3567999999999999999999999999999999999999999999999999999999999998876655443322 234


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD  160 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~  160 (415)
                      .+.++.........      .......|+++..............++++++++|||||||.||+|.++|.++...+....
T Consensus       126 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~  199 (513)
T PRK07656        126 LEHVVICETEEDDP------HTEKMKTFTDFLAAGDPAERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWA  199 (513)
T ss_pred             ccEEEEEcCccccc------CccccccHHHHHhcCCCCCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHH
Confidence            44555443322110      001234566665543322334456789999999999999999999999999998887766


Q ss_pred             hhhhhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHH
Q 014951          161 QMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGIS  238 (415)
Q Consensus       161 ~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  238 (415)
                      ..+     .++.+|++++.+|++|.+++.. ++.+++.|+++++.+. ++..+++.|+++++|++.++|+++..+.+...
T Consensus       200 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~  274 (513)
T PRK07656        200 EYL-----GLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPD  274 (513)
T ss_pred             Hhh-----CCCCCCeEEEccchHHHHHHHHHHHHHHHcCceEEecCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCC
Confidence            655     7788999999999999999875 6788999999988766 99999999999999999999999998865211


Q ss_pred             HhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCC-c
Q 014951          239 NKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGA-P  317 (415)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~-~  317 (415)
                      .                                     ...++        +++|.+++||+++++++.+++.+.++. .
T Consensus       275 ~-------------------------------------~~~~~--------~~l~~v~~~g~~~~~~~~~~~~~~~~~~~  309 (513)
T PRK07656        275 R-------------------------------------SAEDL--------SSLRLAVTGAASMPVALLERFESELGVDI  309 (513)
T ss_pred             c-------------------------------------CCCCc--------cceeeEEecCCCCCHHHHHHHHHHcCCCc
Confidence            0                                     00011        389999999999999999999999998 9


Q ss_pred             eEEeeccCCCCceeeeecCCcccc--cCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhhhh
Q 014951          318 LTQGYGLTESCSGCFTSLADVFNM--IGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEE  395 (415)
Q Consensus       318 ~~~~yG~tE~~~~~~~~~~~~~~~--~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~~  395 (415)
                      +++.||+||++++...+.......  .+++|.|+++++++|+| +++.  +++.|+.|||+++|+.++.||++++..+..
T Consensus       310 ~~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d-~~~~--~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~  386 (513)
T PRK07656        310 VLTGYGLSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVN-ELGE--EVPVGEVGELLVRGPNVMKGYYDDPEATAA  386 (513)
T ss_pred             eEeEEccccCCCceeecCccccccccCCCccccCCCcEEEEEC-CCCC--CCCCCCceEEEEEcchhhhhhcCCHHHHhh
Confidence            999999999987776555443322  58899999999999999 6664  445669999999999999999999999888


Q ss_pred             hhc-CCceecCceEEEcCCCC
Q 014951          396 VIV-DGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       396 ~~~-~g~~~TGDlg~~d~~G~  415 (415)
                      .+. +|||+|||+|++|++|+
T Consensus       387 ~~~~~~~~~tGDl~~~~~~g~  407 (513)
T PRK07656        387 AIDADGWLHTGDLGRLDEEGY  407 (513)
T ss_pred             hhccCCceeccceEEEcCCee
Confidence            885 99999999999999884

>PRK09274 peptide synthase; Provisional

Probab=100.00  E-value=3.9e-48  Score=380.89  Aligned_cols=344  Identities=20%  Similarity=0.234  Sum_probs=261.7

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCC--ChhhhhhcCccCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN--KIPSILSCLPRCC   78 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~--~~~~~~~~~~~~~   78 (415)
                      |.+.|+++||+|+++++|+++++++++||+++|++++|++|.++.+++.+++++++++++|++.+  ....+....   .
T Consensus        58 L~~~g~~~gd~V~~~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~---~  134 (552)
T PRK09274         58 LNAAGIGRGMRAVLMVTPSLEFFALTFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWG---K  134 (552)
T ss_pred             HHHcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhccC---c
Confidence            45689999999999999999999999999999999999999999999999999999999998752  112111111   0


Q ss_pred             CCccEEEEecCCCchhhHHhhhcCceeecHHHHHhcC-CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhh
Q 014951           79 LYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVL  157 (415)
Q Consensus        79 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~  157 (415)
                      ...+.++.++...          ......++++.... ..........++++++++|||||||.||+|++||.++...+.
T Consensus       135 ~~~~~~i~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~  204 (552)
T PRK09274        135 PSVRRLVTVGGRL----------LWGGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIE  204 (552)
T ss_pred             cchhheecccccc----------ccCCccHHHhcccCccccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHH
Confidence            1222233322110          00112334433111 112223345678999999999999999999999999999888


Q ss_pred             hhhhhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeC--------CCHHHHHHHHHhhCCeEEEeCcHH
Q 014951          158 SVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWR--------GDVRYLMEDIQELKPTMFSGVPRV  229 (415)
Q Consensus       158 ~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~--------~~~~~~~~~i~~~~~t~~~~~P~~  229 (415)
                      .....+     .+..+|+.++..|++|.+++       ..|+++++.+        .++..+++.|+++++|+++++|++
T Consensus       205 ~~~~~~-----~~~~~~~~~~~~pl~~~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~  272 (552)
T PRK09274        205 ALREDY-----GIEPGEIDLPTFPLFALFGP-------ALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPAL  272 (552)
T ss_pred             HHHHHh-----CCCCCceeeeccCHHHhhhh-------hhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHH
Confidence            776665     67788999999999876543       4577776653        278999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHH
Q 014951          230 YDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEF  309 (415)
Q Consensus       230 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~  309 (415)
                      ++.+.+......                                     .+        .+++|.+++||+++++++.++
T Consensus       273 ~~~l~~~~~~~~-------------------------------------~~--------~~~lr~~~~gG~~~~~~~~~~  307 (552)
T PRK09274        273 LERLGRYGEANG-------------------------------------IK--------LPSLRRVISAGAPVPIAVIER  307 (552)
T ss_pred             HHHHHHHhhhcC-------------------------------------CC--------CchhhEEEecCCcCCHHHHHH
Confidence            999876321100                                     00        137999999999999999999


Q ss_pred             HHHhc--CCceEEeeccCCCCceeeeecCC---------cccccCcccccccCeEEEEeecCCC-------CCCCCCCCC
Q 014951          310 LRVTS--GAPLTQGYGLTESCSGCFTSLAD---------VFNMIGTVGVPMTTVEARLESVPEM-------GYDALSSVP  371 (415)
Q Consensus       310 ~~~~~--~~~~~~~yG~tE~~~~~~~~~~~---------~~~~~~~~G~~~~g~~~~i~~~~~~-------~~~~~~~~~  371 (415)
                      +++.+  +.++++.||+||++.++......         ......++|+|+++++++|+| +++       ...+++.|+
T Consensus       308 ~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd-~~~~~~~~~~~~~~~~~g~  386 (552)
T PRK09274        308 FRAMLPPDAEILTPYGATEALPISSIESREILFATRAATDNGAGICVGRPVDGVEVRIIA-ISDAPIPEWDDALRLATGE  386 (552)
T ss_pred             HHHHcCCCceEEccccccccceeEeecchhhhccccccccCCCCcccCccCCCceEEEEe-ccccccccccccccCCCCC
Confidence            99988  46999999999998766543221         011124789999999999998 422       224567789


Q ss_pred             CCeEEEecCCccccccCCchhhhhhh---cCC--ceecCceEEEcCCCC
Q 014951          372 RGEICLRGNTLFSGYYKRPDLTEEVI---VDG--WFHTGDIGEWQPMEL  415 (415)
Q Consensus       372 ~Gel~v~~~~~~~gY~~~~~~~~~~~---~~g--~~~TGDlg~~d~~G~  415 (415)
                      .|||+++|+.++.|||++++.+...|   .+|  ||+|||+|++|+||+
T Consensus       387 ~Gel~v~g~~~~~GY~~~~~~t~~~~~~~~~g~~w~~TGDlg~~d~dG~  435 (552)
T PRK09274        387 IGEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYLDAQGR  435 (552)
T ss_pred             eeEEEEecCcccccccCChHHhhhhhcccCCCCcEEEcCCEEEEccCCc
Confidence            99999999999999999999998876   356  999999999999985

>PRK13382 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=8.3e-48  Score=376.68  Aligned_cols=346  Identities=19%  Similarity=0.236  Sum_probs=270.7

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |.+.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++.++++++|++.+....+....... +.
T Consensus        85 L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~  163 (537)
T PRK13382         85 LQALPIGEPRVVGIMCRNHRGFVEALLAANRIGADILLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALADC-PQ  163 (537)
T ss_pred             HHHcCCCCCCEEEEEecCcHHHHHHHHHHHHcCcEEEecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhhc-cc
Confidence            35679999999999999999999999999999999999999999999999999999999999987665544322211 22


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD  160 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~  160 (415)
                      ...++.+....            ....++++.......  .+...+++.++++|||||||.||+|.++|.++........
T Consensus       164 ~~~~~~~~~~~------------~~~~~~~~~~~~~~~--~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~  229 (537)
T PRK13382        164 ATRIVAWTDED------------HDLTVEVLIAAHAGQ--RPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAIL  229 (537)
T ss_pred             cceEEEecCCc------------ccccHHHHhhccCcC--CCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHH
Confidence            22333332211            012334343322111  1223468899999999999999999999998887776655


Q ss_pred             hhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHHH
Q 014951          161 QMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISN  239 (415)
Q Consensus       161 ~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~  239 (415)
                      ..+     .+..+++++...|++|.+++...+.++..|+++++.+. ++..+++.|+++++|++.++|++++.+++....
T Consensus       230 ~~~-----~~~~~~~~l~~~p~~~~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~  304 (537)
T PRK13382        230 DRT-----PWRAEEPTVIVAPMFHAWGFSQLVLAASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAE  304 (537)
T ss_pred             Hhh-----CCCCCCeEEEecChHhhhHHHHHHHHHhcCcEEEECCCcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCch
Confidence            544     56788999999999999998778888899999988765 999999999999999999999999987641100


Q ss_pred             hhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCCceE
Q 014951          240 KISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLT  319 (415)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~~  319 (415)
                      .                                   ....+        ..++|.+++||+++++++.+.+.+.++.+++
T Consensus       305 ~-----------------------------------~~~~~--------~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~  341 (537)
T PRK13382        305 V-----------------------------------RNRYS--------GRSLRFAAASGSRMRPDVVIAFMDQFGDVIY  341 (537)
T ss_pred             h-----------------------------------cccCC--------ccceeEEEEcCCCCCHHHHHHHHHHcCCcEE
Confidence            0                                   00000        1379999999999999999999999999999


Q ss_pred             EeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhhhhhhcC
Q 014951          320 QGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVD  399 (415)
Q Consensus       320 ~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~~~~~~  399 (415)
                      +.||+||++.++...........+++|+|+++++++|+| +++..  ++.|+.|||+++|++++.||+  ++.+. .+.+
T Consensus       342 ~~YG~TE~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~~~~--~~~g~~GEl~v~g~~~~~gY~--~~~~~-~~~~  415 (537)
T PRK13382        342 NNYNATEAGMIATATPADLRAAPDTAGRPAEGTEIRILD-QDFRE--VPTGEVGTIFVRNDTQFDGYT--SGSTK-DFHD  415 (537)
T ss_pred             ecccccccCcceecChhHhccCCCCccccCcCcEEEEEC-CCCCC--CCCCCeeEEEEEcCCcccCcc--ccchh-hccC
Confidence            999999998766544332223458999999999999999 77654  456699999999999999998  44443 4568


Q ss_pred             CceecCceEEEcCCCC
Q 014951          400 GWFHTGDIGEWQPMEL  415 (415)
Q Consensus       400 g~~~TGDlg~~d~~G~  415 (415)
                      |||+|||++++|+||+
T Consensus       416 g~~~TGDl~~~~~~g~  431 (537)
T PRK13382        416 GFMASGDVGYLDENGR  431 (537)
T ss_pred             CCEeeCceEEEeCCCc
Confidence            9999999999999985

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=9.1e-48  Score=378.07  Aligned_cols=358  Identities=24%  Similarity=0.380  Sum_probs=279.1

Q ss_pred             ccC-CCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            2 RSR-GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         2 ~~~-Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      .+. |+++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++.++++++|++.+..+.+.......  .
T Consensus        53 ~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~--~  130 (546)
T PRK08314         53 QQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNL--R  130 (546)
T ss_pred             HHhhCCCCCCEEEEECCCChHHHHHHHHHHHcCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhcc--C
Confidence            455 9999999999999999999999999999999999999999999999999999999999988766654432221  2


Q ss_pred             ccEEEEecCCCc--h-----hhH-------HhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEE
Q 014951           81 LKTIVSFANVSS--S-----QKK-------EAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVV  146 (415)
Q Consensus        81 ~~~v~~~~~~~~--~-----~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~  146 (415)
                      .+.++.......  .     ...       ........+..+++...... ........++++++++|||||||.||+|.
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~  209 (546)
T PRK08314        131 LRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQALAPGGVVAWKEALAAGL-APPPHTAGPDDLAVLPYTSGTTGVPKGCM  209 (546)
T ss_pred             cceEEEecchhhcccccccCcccccccccccccccccccccHHHHhcccC-CCCCCCCCCCCeEEEEeCCCCCCCCcEEE
Confidence            233332211000  0     000       00000112334555543321 12233456789999999999999999999


Q ss_pred             eecHHHHHHhhhhhhhhhhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEE
Q 014951          147 LTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFS  224 (415)
Q Consensus       147 ~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~  224 (415)
                      +||++++.++......+     .+..+|++++.+|++|..++.. ++.++..|+++++.+. ++..+++.++++++|++.
T Consensus       210 ~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~  284 (546)
T PRK08314        210 HTHRTVMANAVGSVLWS-----NSTPESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWT  284 (546)
T ss_pred             EecHHHHHHHHHHHHhh-----CCCCCceEEEEcCchHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceec
Confidence            99999999888765555     6788999999999999999865 6788999999999887 899999999999999999


Q ss_pred             eCcHHHHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCH
Q 014951          225 GVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPI  304 (415)
Q Consensus       225 ~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~  304 (415)
                      ++|+++..++..                                     +.....++        +++|.+++||+++++
T Consensus       285 ~~p~~~~~ll~~-------------------------------------~~~~~~~~--------~~l~~~~~gG~~~~~  319 (546)
T PRK08314        285 NIPTMVVDFLAS-------------------------------------PGLAERDL--------SSLRYIGGGGAAMPE  319 (546)
T ss_pred             ccHHHHHHHHhC-------------------------------------CCccccCc--------hhhheeeeccccCCH
Confidence            999999877541                                     00111111        378999999999999


Q ss_pred             HHHHHHHHhcCCceEEeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccc
Q 014951          305 HVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFS  384 (415)
Q Consensus       305 ~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~  384 (415)
                      ++.+++.+.++.++++.||+||++........+.. ..+++|.|++|++++|+| ++.. .+++.++.|||+++|+.++.
T Consensus       320 ~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~-~~~~~G~~~~g~~~~i~d-~~~~-~~~~~g~~Gel~v~g~~~~~  396 (546)
T PRK08314        320 AVAERLKELTGLDYVEGYGLTETMAQTHSNPPDRP-KLQCLGIPTFGVDARVID-PETL-EELPPGEVGEIVVHGPQVFK  396 (546)
T ss_pred             HHHHHHHHHcCCcEEecccccccccceecCCCcCC-CCCccCcccCCeEEEEEe-CCCC-cCCCCCCceEEEEECCchhc
Confidence            99999999899999999999999876655443322 347899999999999999 4432 34456689999999999999


Q ss_pred             cccCCchhhhhhhc--C--CceecCceEEEcCCCC
Q 014951          385 GYYKRPDLTEEVIV--D--GWFHTGDIGEWQPMEL  415 (415)
Q Consensus       385 gY~~~~~~~~~~~~--~--g~~~TGDlg~~d~~G~  415 (415)
                      ||+++++.+++.|.  +  +||+|||+|++|++|+
T Consensus       397 gY~~~~~~t~~~f~~~~~~~~~~TGDl~~~~~~g~  431 (546)
T PRK08314        397 GYWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGY  431 (546)
T ss_pred             cccCChhHhhhhhhhcCCCceEecCCEEEEcCCCc
Confidence            99999999988872  3  5999999999999985

>PLN02246 4-coumarate--CoA ligase

Probab=100.00  E-value=1.1e-47  Score=376.38  Aligned_cols=353  Identities=26%  Similarity=0.387  Sum_probs=276.5

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |.++|+++||+|+++++|+++++++++||+++|++++|+++..+.+++..+++.++++++|++......+......  ..
T Consensus        67 L~~~g~~~gd~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~--~~  144 (537)
T PLN02246         67 LHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAED--DG  144 (537)
T ss_pred             HHHhCCCCCCEEEEECCCChHHHHHHHHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhc--CC
Confidence            3568999999999999999999999999999999999999999999999999999999999998876655443221  11


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD  160 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~  160 (415)
                       ..++.++...           .....+.++........+.....++++++++|||||||.||+|+++|+++........
T Consensus       145 -~~~i~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~  212 (537)
T PLN02246        145 -VTVVTIDDPP-----------EGCLHFSELTQADENELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQV  212 (537)
T ss_pred             -ceEEEeCCCC-----------CCceeHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHh
Confidence             2344443321           0123344443322222222345678999999999999999999999999988765432


Q ss_pred             hhhhhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHH
Q 014951          161 QMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGIS  238 (415)
Q Consensus       161 ~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  238 (415)
                      ... .....+..+|++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.|+++++|++.++|+++..+.+...
T Consensus       213 ~~~-~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~  291 (537)
T PLN02246        213 DGE-NPNLYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPV  291 (537)
T ss_pred             hcc-ccccCCCCCcEEEEeechHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCcc
Confidence            210 01126789999999999999999875 6678999999999887 99999999999999999999999988754110


Q ss_pred             HhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhc-CCc
Q 014951          239 NKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAP  317 (415)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~-~~~  317 (415)
                                                           ....++        +++|.+++||+++++++.+++.+.+ +..
T Consensus       292 -------------------------------------~~~~~~--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~~  326 (537)
T PLN02246        292 -------------------------------------VEKYDL--------SSIRMVLSGAAPLGKELEDAFRAKLPNAV  326 (537)
T ss_pred             -------------------------------------ccccCc--------cceeEEEEecCcCCHHHHHHHHHHcCCCe
Confidence                                                 000001        3799999999999999999999988 678


Q ss_pred             eEEeeccCCCCceeeeecC---C-cccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhh
Q 014951          318 LTQGYGLTESCSGCFTSLA---D-VFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLT  393 (415)
Q Consensus       318 ~~~~yG~tE~~~~~~~~~~---~-~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~  393 (415)
                      +++.||+||++.+++....   . ....++++|+|+++++++|+| ++++ .+++.|+.|||+++|+.++.||+++++.+
T Consensus       327 ~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~-~~~~~g~~Gel~v~g~~~~~GY~~~~~~~  404 (537)
T PLN02246        327 LGQGYGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVD-PETG-ASLPRNQPGEICIRGPQIMKGYLNDPEAT  404 (537)
T ss_pred             EeccccccccCcccccccccCCCCccccCCccccccCCcEEEEec-CCCC-CcCCCCCceEEEEECCchhccccCCchhh
Confidence            9999999999876543221   1 112347899999999999998 4332 45567799999999999999999999999


Q ss_pred             hhhh-cCCceecCceEEEcCCCC
Q 014951          394 EEVI-VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       394 ~~~~-~~g~~~TGDlg~~d~~G~  415 (415)
                      .+.| .+|||+|||+|++|+||+
T Consensus       405 ~~~~~~~~~~~TGD~~~~~~~g~  427 (537)
T PLN02246        405 ANTIDKDGWLHTGDIGYIDDDDE  427 (537)
T ss_pred             hhcccCCCCeeecceEEEeCCCe
Confidence            9888 689999999999999984

>PRK05857 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.5e-48  Score=380.61  Aligned_cols=352  Identities=21%  Similarity=0.264  Sum_probs=263.5

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |.+.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++.+|+++........ .......
T Consensus        58 L~~~g~~~g~~V~i~~~~~~e~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~-~~~~~~~  136 (540)
T PRK05857         58 LRAQSVSRGSRVLVISDNGPETYLSVLACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMASSA-VPEALHS  136 (540)
T ss_pred             HHHhCcCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCccCCHHHHHHHHHhcCCceEEEeccchhcccc-ccccccc
Confidence            456799999999999999999999999999999999999999999999999999999999999865322111 1111111


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD  160 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~  160 (415)
                      .. ++..+..... .         .  +.+.... ..........++++++++|||||||.||+|.+||+++..+.....
T Consensus       137 ~~-~~~~~~~~~~-~---------~--~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~  202 (540)
T PRK05857        137 IP-VIAVDIAAVT-R---------E--SEHSLDA-ASLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQ  202 (540)
T ss_pred             cc-eeEeeccccc-c---------c--ccccccc-cccccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhh
Confidence            11 2222211100 0         0  0000000 001112345678999999999999999999999999987654332


Q ss_pred             hhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCCCHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHHHh
Q 014951          161 QMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNK  240 (415)
Q Consensus       161 ~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~  240 (415)
                      .. .........++++++.+|++|..++...+.+++.|+++++.+.++..+++.|+++++|+++++|+++..+++.....
T Consensus       203 ~~-~~~~~~~~~~~~~~~~~p~~h~~~l~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~  281 (540)
T PRK05857        203 KE-GLNWVTWVVGETTYSPLPATHIGGLWWILTCLMHGGLCVTGGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSA  281 (540)
T ss_pred             hc-cccccccccCceeeecCCccccchHHHHHHHhhcceeEEecCCChhHHHHHHHhcCcceEEeChHHHHHHHhccccC
Confidence            11 01111445678999999999999988778889999998876668999999999999999999999998886522100


Q ss_pred             hhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCCceEE
Q 014951          241 ISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQ  320 (415)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~~~  320 (415)
                                                           ..++        +++|.+++||++++....+++. .+++++++
T Consensus       282 -------------------------------------~~~~--------~~lr~~~~gG~~~~~~~~~~~~-~~g~~i~~  315 (540)
T PRK05857        282 -------------------------------------NATV--------PSLRLVGYGGSRAIAADVRFIE-ATGVRTAQ  315 (540)
T ss_pred             -------------------------------------CCcC--------ccceEEEEcCccCCchhHHHHH-HhCCeeec
Confidence                                                 0001        3899999999999888776554 67999999


Q ss_pred             eeccCCCCceeeeecCCc----ccccCcccccccCeEEEEeecCCCCCCC----CCCCCCCeEEEecCCccccccCCchh
Q 014951          321 GYGLTESCSGCFTSLADV----FNMIGTVGVPMTTVEARLESVPEMGYDA----LSSVPRGEICLRGNTLFSGYYKRPDL  392 (415)
Q Consensus       321 ~yG~tE~~~~~~~~~~~~----~~~~~~~G~~~~g~~~~i~~~~~~~~~~----~~~~~~Gel~v~~~~~~~gY~~~~~~  392 (415)
                      .||+||++........+.    ....+++|+|++|++++|++ +++....    .+.++.|||+++||.++.|||++++.
T Consensus       316 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d-~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~  394 (540)
T PRK05857        316 VYGLSETGCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAA-TDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPER  394 (540)
T ss_pred             ccCCCcCCceeeecccccccccccccCCcCcccCCcEEEEEC-ccccCccccccCCCCCcceEEEeCcchhhhhhCCccc
Confidence            999999986544332221    11347899999999999998 6554221    23468899999999999999999999


Q ss_pred             hhhhhcCCceecCceEEEcCCCC
Q 014951          393 TEEVIVDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       393 ~~~~~~~g~~~TGDlg~~d~~G~  415 (415)
                      +.+.|.+|||+|||+|++|+||+
T Consensus       395 t~~~~~~g~~~TGDlg~~d~~g~  417 (540)
T PRK05857        395 TAEVLIDGWVNTGDLLERREDGF  417 (540)
T ss_pred             hhhhcCCCceeccceEEEcCCce
Confidence            99999999999999999999985

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.3e-47  Score=375.29  Aligned_cols=357  Identities=27%  Similarity=0.424  Sum_probs=294.3

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |.+.|+++||+|+++++|+++++++++||+++|++++++++.++.+++..+++.+++++++++.+..+.+.+..... +.
T Consensus        48 L~~~g~~~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~-~~  126 (521)
T PRK06187         48 LRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQL-PT  126 (521)
T ss_pred             HHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhhcc-CC
Confidence            34679999999999999999999999999999999999999999999999999999999999998777665544432 44


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD  160 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~  160 (415)
                      .+.++..++....      ........+.++...............+++++++|||||||.||+|.+||.++........
T Consensus       127 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~  200 (521)
T PRK06187        127 VRTVIVEGDGPAA------PLAPEVGEYEELLAAASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVC  200 (521)
T ss_pred             ccEEEEecCcccc------ccccccccHHHHhhcCCccCCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHH
Confidence            5566666543210      1112345566665544333334456678999999999999999999999999998887766


Q ss_pred             hhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHHH
Q 014951          161 QMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISN  239 (415)
Q Consensus       161 ~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~  239 (415)
                      ..+     .+..+|++++.+|++|.+++...+.+++.|+++++.+. ++..+++.++++++|.++++|++++.+.+....
T Consensus       201 ~~~-----~~~~~d~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~  275 (521)
T PRK06187        201 AWL-----KLSRDDVYLVIVPMFHVHAWGLPYLALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRA  275 (521)
T ss_pred             Hhh-----CCCCCCEEEEeCCchHHhhHHHHHHHHHhCCEEEecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCC
Confidence            655     77899999999999999998877779999999999876 999999999999999999999999988652211


Q ss_pred             hhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCCceE
Q 014951          240 KISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLT  319 (415)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~~  319 (415)
                                                           ...++        .++|.+++||+++++++.+++.+.++++++
T Consensus       276 -------------------------------------~~~~~--------~~l~~v~~~Ge~l~~~~~~~~~~~~~~~v~  310 (521)
T PRK06187        276 -------------------------------------YFVDF--------SSLRLVIYGGAALPPALLREFKEKFGIDLV  310 (521)
T ss_pred             -------------------------------------CccCc--------chhhEEEEcCcCCCHHHHHHHHHHhCcchh
Confidence                                                 00011        379999999999999999999998899999


Q ss_pred             EeeccCCCCceeeeecCCcc-----cccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhhh
Q 014951          320 QGYGLTESCSGCFTSLADVF-----NMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTE  394 (415)
Q Consensus       320 ~~yG~tE~~~~~~~~~~~~~-----~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~  394 (415)
                      +.||+||++.++........     ...+++|.|++++.++|+| +++..++.+.|+.|||+++|+.++.||+++++.+.
T Consensus       311 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~  389 (521)
T PRK06187        311 QGYGMTETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVD-DDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATA  389 (521)
T ss_pred             eeeccCccCcccccCCcccccccccccCCccccccCCeEEEEEC-CCCCCCCCCCCCeeEEEEECcchhhhhcCCHHHHH
Confidence            99999999876655443322     2458899999999999999 77776665447999999999999999999999999


Q ss_pred             hhhcCCceecCceEEEcCCCC
Q 014951          395 EVIVDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       395 ~~~~~g~~~TGDlg~~d~~G~  415 (415)
                      +.|.++||+|||++++|++|+
T Consensus       390 ~~~~~~~~~tGD~~~~~~~g~  410 (521)
T PRK06187        390 ETIDGGWLHTGDVGYIDEDGY  410 (521)
T ss_pred             HHhhCCceeccceEEEcCCCC
Confidence            999899999999999999985

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.7e-47  Score=374.77  Aligned_cols=355  Identities=20%  Similarity=0.321  Sum_probs=276.9

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |.+.|+++||+|+++++|+++++++++||+++|++++|++|.++++++..+++.+++++++++.+..+.+.+..... ..
T Consensus        56 L~~~g~~~~d~v~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~  134 (539)
T PRK07008         56 LAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQC-PN  134 (539)
T ss_pred             HHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHhhC-CC
Confidence            45679999999999999999999999999999999999999999999999999999999999988766554433222 33


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhh--h
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVL--S  158 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~--~  158 (415)
                      .+.++........     ......+..++++..............++++++++|||||||.||+|++||.++.....  .
T Consensus       135 ~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~  209 (539)
T PRK07008        135 VKGWVAMTDAAHL-----PAGSTPLLCYETLVGAQDGDYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAA  209 (539)
T ss_pred             ceEEEEEccCCcc-----ccCCcccccHHHHhcccCCCcCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhh
Confidence            4455544332110     00112345666765443222223345678899999999999999999999999875432  2


Q ss_pred             hhhhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC--CHHHHHHHHHhhCCeEEEeCcHHHHHHHHH
Q 014951          159 VDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTG  236 (415)
Q Consensus       159 ~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~  236 (415)
                      ....+     .++.+|++++..|++|..++...+.++..|+++++.+.  ++..+++.++++++|++.++|+++..+++.
T Consensus       210 ~~~~~-----~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~  284 (539)
T PRK07008        210 LPDAM-----GLSARDAVLPVVPMFHVNAWGLPYSAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNH  284 (539)
T ss_pred             ccccc-----CCCCCceEEecCchHHhhhHHHHHHHHhcCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhc
Confidence            22223     66789999999999998887777788899999998754  899999999999999999999999987652


Q ss_pred             HHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCC
Q 014951          237 ISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGA  316 (415)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~  316 (415)
                      ....                                     ..++        +++|.++++|+++++++.+.+.+.++.
T Consensus       285 ~~~~-------------------------------------~~~~--------~~l~~~~~~G~~l~~~~~~~~~~~~~~  319 (539)
T PRK07008        285 MREA-------------------------------------GLRF--------STLRRTVIGGSACPPAMIRTFEDEYGV  319 (539)
T ss_pred             cccc-------------------------------------CCCc--------ccceEEEEcCCCCCHHHHHHHHHHhCC
Confidence            2110                                     0011        379999999999999999999888999


Q ss_pred             ceEEeeccCCCCceeeeecCC----------cccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccc
Q 014951          317 PLTQGYGLTESCSGCFTSLAD----------VFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGY  386 (415)
Q Consensus       317 ~~~~~yG~tE~~~~~~~~~~~----------~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY  386 (415)
                      ++++.||+||++..+......          ......++|+|+||++++|+| +++...+.+.++.|||+++|+.++.||
T Consensus       320 ~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~~~~i~d-~~~~~~~~~~~~~Gei~v~g~~~~~gy  398 (539)
T PRK07008        320 EVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVG-DDGRELPWDGKAFGDLQVRGPWVIDRY  398 (539)
T ss_pred             ceecccccccccccceecccccccccCCchhhhhhcccCCccccceEEEEEC-CCCCccCCCCCcceEEEEeCCccchhh
Confidence            999999999998755433211          011236799999999999999 777766665557899999999999999


Q ss_pred             cCCchhhhhhhcCCceecCceEEEcCCCC
Q 014951          387 YKRPDLTEEVIVDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       387 ~~~~~~~~~~~~~g~~~TGDlg~~d~~G~  415 (415)
                      +++++   ..+.+|||+|||+|++|+||+
T Consensus       399 ~~~~~---~~~~~g~~~TGD~~~~~~dg~  424 (539)
T PRK07008        399 FRGDA---SPLVDGWFPTGDVATIDADGF  424 (539)
T ss_pred             cCChh---hhhcCCCcccCceEEEcCCCc
Confidence            99883   345689999999999999985

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.2e-47  Score=379.07  Aligned_cols=364  Identities=27%  Similarity=0.452  Sum_probs=280.1

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |.+.|+++||+|+++++|+++++++++||+++|++++|++|.++.+++.+++++++++++|+++.....+......  ..
T Consensus        74 L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~  151 (573)
T PRK05605         74 LRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRT--TP  151 (573)
T ss_pred             HHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhc--cc
Confidence            3567999999999999999999999999999999999999999999999999999999999988766554433221  12


Q ss_pred             ccEEEEecCCCch---hhH--------------HhhhcCceeecHHHHHhcCCCC----CCCCCCCCCCeEEEEecCCCC
Q 014951           81 LKTIVSFANVSSS---QKK--------------EAEELGVSCFSWEEFLQLGTLD----CELPPKKKTNISTIMYTSGTT  139 (415)
Q Consensus        81 ~~~v~~~~~~~~~---~~~--------------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~TSGtT  139 (415)
                      .+.++.++.....   ...              ...........|+++.......    ........+++++++||||||
T Consensus       152 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTT  231 (573)
T PRK05605        152 LETIVSVNMIAAMPLLQRLALRLPIPALRKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTT  231 (573)
T ss_pred             cceeEeeecccccccccccccccccccccccccccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCC
Confidence            2333333211000   000              0000011234566554432111    122345678999999999999


Q ss_pred             CCCceEEeecHHHHHHhhhhhhhhhhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC-CHHHHHHHHHh
Q 014951          140 GEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQE  217 (415)
Q Consensus       140 G~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~  217 (415)
                      |.||+|.+||.++...+......+.   ......+++++.+|++|.+++.. ++.+++.|+++++.+. ++..+++.+++
T Consensus       232 G~PK~v~~s~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~  308 (573)
T PRK05605        232 GKPKGAQLTHRNLFANAAQGKAWVP---GLGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKK  308 (573)
T ss_pred             CCCcEEEEecHHHHHHHHHHHhhcc---ccCCCCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHH
Confidence            9999999999999887754333220   01235789999999999999875 5667899999988876 99999999999


Q ss_pred             hCCeEEEeCcHHHHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEE
Q 014951          218 LKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLS  297 (415)
Q Consensus       218 ~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~  297 (415)
                      +++|++.++|.+++.+.+....                                     ...++        +++|.+++
T Consensus       309 ~~~t~~~~~P~~~~~l~~~~~~-------------------------------------~~~~~--------~~lr~i~~  343 (573)
T PRK05605        309 HPPTWLPGVPPLYEKIAEAAEE-------------------------------------RGVDL--------SGVRNAFS  343 (573)
T ss_pred             hCCEEEEchHHHHHHHHhCccc-------------------------------------cCCCc--------hhccEEEE
Confidence            9999999999999988652110                                     00011        37999999


Q ss_pred             ecCCCCHHHHHHHHHhcCCceEEeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEE
Q 014951          298 GAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICL  377 (415)
Q Consensus       298 ~G~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v  377 (415)
                      ||+++++++.+.+.+.++.++++.||+||+++++...........+++|.|++|+.++|+| +++...+++.++.|||++
T Consensus       344 gg~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~~~g~~Gel~v  422 (573)
T PRK05605        344 GAMALPVSTVELWEKLTGGLLVEGYGLTETSPIIVGNPMSDDRRPGYVGVPFPDTEVRIVD-PEDPDETMPDGEEGELLV  422 (573)
T ss_pred             CCCcCCHHHHHHHHHHhCCCeecccccchhchhhhcCCcccCCcCCccccCCCCCEEEEEc-CCCCCccCCCCCeeEEEE
Confidence            9999999999999988899999999999998776655443334458999999999999999 655335566779999999


Q ss_pred             ecCCccccccCCchhhhhhhcCCceecCceEEEcCCCC
Q 014951          378 RGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       378 ~~~~~~~gY~~~~~~~~~~~~~g~~~TGDlg~~d~~G~  415 (415)
                      +|+.++.||+++++.+.+.|.+|||+|||+|++|++|+
T Consensus       423 ~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~  460 (573)
T PRK05605        423 RGPQVFKGYWNRPEETAKSFLDGWFRTGDVVVMEEDGF  460 (573)
T ss_pred             ecCchhhhhcCChhHhhhcccCCCcccCCEEEEcCCCc
Confidence            99999999999999999999889999999999999985

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.9e-47  Score=375.09  Aligned_cols=358  Identities=22%  Similarity=0.363  Sum_probs=270.0

Q ss_pred             CCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccE
Q 014951            4 RGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKT   83 (415)
Q Consensus         4 ~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~   83 (415)
                      .|+++||+|+++++|++++++++|||+++|++++|++|..+.+++.+++++++++++|++.+....+.+....  ...+.
T Consensus        70 ~gi~~gd~Vai~~~n~~~~~~~~la~~~~Ga~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~  147 (562)
T PRK05677         70 TDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPK--TGVKH  147 (562)
T ss_pred             cCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEeecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhc--cCcce
Confidence            5999999999999999999999999999999999999999999999999999999999987665544332221  12233


Q ss_pred             EEEecCCC--chhhH-Hhh-----------h-cCceeecHHHHHhcCC-CCCCCCCCCCCCeEEEEecCCCCCCCceEEe
Q 014951           84 IVSFANVS--SSQKK-EAE-----------E-LGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVL  147 (415)
Q Consensus        84 v~~~~~~~--~~~~~-~~~-----------~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~  147 (415)
                      ++..+...  ..... ...           . .......+.+.+.... .........++++++++|||||||.||+|++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~  227 (562)
T PRK05677        148 VIVTEVADMLPPLKRLLINAVVKHVKKMVPAYHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAML  227 (562)
T ss_pred             eEEecccccccchhhhhcccchhhccccccccCCcccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEE
Confidence            33322110  00000 000           0 0001223444443321 1112233467999999999999999999999


Q ss_pred             ecHHHHHHhhhhhhhhhhccccCC-CCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC--CHHHHHHHHHhhCCeEE
Q 014951          148 TNQAIVAEVLSVDQMFVVTGKVCS-EEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMF  223 (415)
Q Consensus       148 th~~l~~~~~~~~~~~~~~~~~~~-~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~--~~~~~~~~i~~~~~t~~  223 (415)
                      +|.++..........+..   ... ..+.+++.+|++|.+++.. ++..+..|+++++.+.  ++..+++.|+++++|++
T Consensus       228 s~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~  304 (562)
T PRK05677        228 THRNLVANMLQCRALMGS---NLNEGCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGF  304 (562)
T ss_pred             ehhHHHHHHHHHHHHhcc---CCCCCccEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEE
Confidence            999998776554433311   122 3478899999999999864 5567778888776653  88999999999999999


Q ss_pred             EeCcHHHHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCC
Q 014951          224 SGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLP  303 (415)
Q Consensus       224 ~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~  303 (415)
                      +++|+++..+.+...                                     ....++        +++|.+++||++++
T Consensus       305 ~~~p~~~~~l~~~~~-------------------------------------~~~~~~--------~~lr~v~~gG~~~~  339 (562)
T PRK05677        305 VGLNTLFVALCNNEA-------------------------------------FRKLDF--------SALKLTLSGGMALQ  339 (562)
T ss_pred             ecHHHHHHHHHhCcc-------------------------------------cccCCh--------hhceEEEEcCccCC
Confidence            999999988754100                                     000111        37999999999999


Q ss_pred             HHHHHHHHHhcCCceEEeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCcc
Q 014951          304 IHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLF  383 (415)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~  383 (415)
                      +++.+.+.+.++.++++.||+||++.++.....+. ..++++|+|+++++++|+| +++.  +++.|+.|||+++|+.++
T Consensus       340 ~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~-~~~~~vG~~~~~~~v~i~d-~~~~--~~~~g~~Gel~v~g~~~~  415 (562)
T PRK05677        340 LATAERWKEVTGCAICEGYGMTETSPVVSVNPSQA-IQVGTIGIPVPSTLCKVID-DDGN--ELPLGEVGELCVKGPQVM  415 (562)
T ss_pred             HHHHHHHHHHcCCCeeccCCccccCcceeecCccC-CCCCccCccCCCCEEEEEC-CCCC--CCCCCCCeEEEEecCccc
Confidence            99999999989999999999999987665544332 2347899999999999999 6665  455679999999999999


Q ss_pred             ccccCCchhhhhhh-cCCceecCceEEEcCCCC
Q 014951          384 SGYYKRPDLTEEVI-VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       384 ~gY~~~~~~~~~~~-~~g~~~TGDlg~~d~~G~  415 (415)
                      .||+++++.+.+.| .+|||+|||+|++|+||+
T Consensus       416 ~gY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~  448 (562)
T PRK05677        416 KGYWQRPEATDEILDSDGWLKTGDIALIQEDGY  448 (562)
T ss_pred             hhhcCCchhhhhccCCCCcccccceEEECCCCc
Confidence            99999999999998 589999999999999985

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.6e-47  Score=381.58  Aligned_cols=360  Identities=17%  Similarity=0.200  Sum_probs=269.9

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCC---------hhhhh
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENK---------IPSIL   71 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~---------~~~~~   71 (415)
                      |+++|+++||+|+++++|+++++++++||+++|++++|+++.++++++..++++++++++|+++..         .+.+.
T Consensus       101 L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~  180 (629)
T PRK10524        101 LRSLGVQRGDRVLIYMPMIAEAAFAMLACARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLD  180 (629)
T ss_pred             HHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999999997642         12222


Q ss_pred             hcCccCCCCccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCC-CCCCCCCCCCCCeEEEEecCCCCCCCceEEeecH
Q 014951           72 SCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQ  150 (415)
Q Consensus        72 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~  150 (415)
                      .+..........++.++.......    ........+.++..... ...+.....++++++++|||||||.||||+++|.
T Consensus       181 ~~~~~~~~~~~~vi~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~  256 (629)
T PRK10524        181 EAIALAQHKPRHVLLVDRGLAPMA----RVAGRDVDYATLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTG  256 (629)
T ss_pred             HHHHhcCCCCCEEEEEeCCCCCcC----cccCCcccHHHHHhcCCCCCCCceeeCCCCceEEEeecCCCCCCceEEECCc
Confidence            222111123345555543211000    00011234555443321 1122223467899999999999999999999999


Q ss_pred             HHHHHhhh-hhhhhhhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC-----CHHHHHHHHHhhCCeEE
Q 014951          151 AIVAEVLS-VDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMF  223 (415)
Q Consensus       151 ~l~~~~~~-~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~-----~~~~~~~~i~~~~~t~~  223 (415)
                      +++..... ....+     .+.++|++++..|++|..+... ++.+++.|+++++.+.     ++..+++.|+++++|++
T Consensus       257 ~~~~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~  331 (629)
T PRK10524        257 GYAVALATSMDTIF-----GGKAGETFFCASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRM  331 (629)
T ss_pred             HHHHHHHHHHHHhc-----CCCCCCEEEEcCCCCeeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEE
Confidence            87654433 22223     5678899999999999888654 7788999999988753     68899999999999999


Q ss_pred             EeCcHHHHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCC
Q 014951          224 SGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLP  303 (415)
Q Consensus       224 ~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~  303 (415)
                      +++|++++.+.+....                                   .....++        ++||.+++||++++
T Consensus       332 ~~~P~~~~~l~~~~~~-----------------------------------~~~~~~l--------~~lr~i~~~Ge~l~  368 (629)
T PRK10524        332 FSAPTAIRVLKKQDPA-----------------------------------LLRKHDL--------SSLRALFLAGEPLD  368 (629)
T ss_pred             EeCHHHHHHHHhcCcc-----------------------------------cccccCh--------hheeEEEEeCCCCC
Confidence            9999999887541000                                   0011111        38999999999999


Q ss_pred             HHHHHHHHHhcCCceEEeeccCCCCceeeeecCC---cccccCcccccccCeEEEEeecC-CCCCCCCCCCCCCeEEEec
Q 014951          304 IHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLAD---VFNMIGTVGVPMTTVEARLESVP-EMGYDALSSVPRGEICLRG  379 (415)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~---~~~~~~~~G~~~~g~~~~i~~~~-~~~~~~~~~~~~Gel~v~~  379 (415)
                      +++.+++.+.++.++++.||+||++..+......   .....+++|+|++|++++|+| + ++..  ++.|+.|||+++|
T Consensus       369 ~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~~g~~--~~~g~~Gel~i~g  445 (629)
T PRK10524        369 EPTASWISEALGVPVIDNYWQTETGWPILAIARGVEDRPTRLGSPGVPMYGYNVKLLN-EVTGEP--CGPNEKGVLVIEG  445 (629)
T ss_pred             HHHHHHHHHhcCCCeEeccccccccchhhcCCCCcccCcCCCCCcccCcCCceEEEEe-CCCCCC--CCCCCcEEEEEcC
Confidence            9999999999999999999999998533322211   122358999999999999999 6 6644  5667999999999


Q ss_pred             C---CccccccCCchhhhhhh----cCCceecCceEEEcCCCC
Q 014951          380 N---TLFSGYYKRPDLTEEVI----VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       380 ~---~~~~gY~~~~~~~~~~~----~~g~~~TGDlg~~d~~G~  415 (415)
                      |   +++.+||++++.+.+.+    .+|||+|||+|++|+||+
T Consensus       446 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~dG~  488 (629)
T PRK10524        446 PLPPGCMQTVWGDDDRFVKTYWSLFGRQVYSTFDWGIRDADGY  488 (629)
T ss_pred             CCChhhcCCccCChHHHHHhhhccCCCcEEEcCCcEEEcCCCc
Confidence            8   57899999998776654    368999999999999995

>PRK07638 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4e-47  Score=368.19  Aligned_cols=331  Identities=15%  Similarity=0.181  Sum_probs=266.8

Q ss_pred             ccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCc
Q 014951            2 RSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYL   81 (415)
Q Consensus         2 ~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~   81 (415)
                      .+.| .+||+|+|+++|++++++++|||+++|++++|+++.++++++..+++.++++++|++......+....       
T Consensus        44 ~~~~-~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~-------  115 (487)
T PRK07638         44 NEKE-SKNKTIAILLENRIEFLQLFAGAAMAGWTCVPLDIKWKQDELKERLAISNADMIVTERYKLNDLPDEE-------  115 (487)
T ss_pred             HHhC-CCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCccCCHHHHHHHHHhCCCCEEEEecccccchhhcc-------
Confidence            3456 48999999999999999999999999999999999999999999999999999999986544432110       


Q ss_pred             cEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhhh
Q 014951           82 KTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQ  161 (415)
Q Consensus        82 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~  161 (415)
                      ..++.++                  .+.+................+++++|+|||||||.||+|+++|+++..++.....
T Consensus       116 ~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~  177 (487)
T PRK07638        116 GRVIEID------------------EWKRMIEKYLPTYAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVH  177 (487)
T ss_pred             ceEEEeh------------------hhhhhhhhccccccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHH
Confidence            1222221                  1111111111111111223567899999999999999999999999988877655


Q ss_pred             hhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHHHh
Q 014951          162 MFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNK  240 (415)
Q Consensus       162 ~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~  240 (415)
                      .+     .+..+|+++...|++|..++...+.+++.|+++++.+. ++..+++.|+++++|++.++|+++..+.+..   
T Consensus       178 ~~-----~~~~~d~~~~~~~l~~~~~l~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~---  249 (487)
T PRK07638        178 DF-----HMKREDSVLIAGTLVHSLFLYGAISTLYVGQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYKEN---  249 (487)
T ss_pred             hc-----CcCCCCEEEEeecchHHHHHHHHHHHHccCcEEEEcCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCc---
Confidence            55     67889999999999998887778888999999998876 9999999999999999999999999886510   


Q ss_pred             hhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhc-CCceE
Q 014951          241 ISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLT  319 (415)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~-~~~~~  319 (415)
                                                        ..            ..+.+.++++|+++++++.+++.+.+ +.+++
T Consensus       250 ----------------------------------~~------------~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~  283 (487)
T PRK07638        250 ----------------------------------RV------------IENKMKIISSGAKWEAEAKEKIKNIFPYAKLY  283 (487)
T ss_pred             ----------------------------------Cc------------CCceeEEEEcCCCCCHHHHHHHHHHcCCCeEE
Confidence                                              00            02456678899999999999999888 67899


Q ss_pred             EeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhhhhhhcC
Q 014951          320 QGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVD  399 (415)
Q Consensus       320 ~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~~~~~~  399 (415)
                      +.||+||++.++...........+++|+|++|++++|+| +++.  +++.|+.|||+++|+.++.||+++++.+.+.+.+
T Consensus       284 ~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~--~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~  360 (487)
T PRK07638        284 EFYGASELSFVTALVDEESERRPNSVGRPFHNVQVRICN-EAGE--EVQKGEIGTVYVKSPQFFMGYIIGGVLARELNAD  360 (487)
T ss_pred             EEecCCccCceEEecccccCCCCCCCCcccCCcEEEEEC-CCCC--CCCCCCCeEEEEecccceeeecCCHHHHhhhccC
Confidence            999999999876655433334457999999999999999 6665  4566799999999999999999999988887789


Q ss_pred             CceecCceEEEcCCCC
Q 014951          400 GWFHTGDIGEWQPMEL  415 (415)
Q Consensus       400 g~~~TGDlg~~d~~G~  415 (415)
                      |||+|||+|++|+||+
T Consensus       361 g~~~TGDl~~~d~~g~  376 (487)
T PRK07638        361 GWMTVRDVGYEDEEGF  376 (487)
T ss_pred             CcEecCccEeEcCCCe
Confidence            9999999999999985

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=100.00  E-value=1.9e-47  Score=380.85  Aligned_cols=359  Identities=18%  Similarity=0.204  Sum_probs=263.3

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCC---------hhhhh
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENK---------IPSIL   71 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~---------~~~~~   71 (415)
                      |++.|+++||+|+++++|++++++++|||+++|++++|+++.++++++.+++++++++++|+++..         .+.+.
T Consensus       131 L~~~Gv~~GdrV~i~~~n~~e~~~~~lA~~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~  210 (652)
T TIGR01217       131 LRALGVRPGDRVSGYLPNIPQAVVAMLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVA  210 (652)
T ss_pred             HHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999999998754         22333


Q ss_pred             hcCccCCCCccEEEEecCCCchhhHHhhhcCceeecHHHHHhcC-CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecH
Q 014951           72 SCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQ  150 (415)
Q Consensus        72 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~  150 (415)
                      ++... .+.++.++.+..........  ........++++.... ...........+|+++|+|||||||.||||+++|.
T Consensus       211 ~~~~~-~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~  287 (652)
T TIGR01217       211 EVRKE-LPTLRAVVHIPYLGPRETEA--PKIDGALDLEDFTAAAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAG  287 (652)
T ss_pred             HHHhc-CCCccEEEEEeCCCCccccc--ccccCcccHHHHHhcccCCCCCceecCCCCCEEEEEcCCCCCCCCeEEeccc
Confidence            32222 23445566554321100000  0001234566665432 11222334567899999999999999999999999


Q ss_pred             HHHHH-hhhhhhhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC-----CHHHHHHHHHhhCCeEEE
Q 014951          151 AIVAE-VLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFS  224 (415)
Q Consensus       151 ~l~~~-~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~-----~~~~~~~~i~~~~~t~~~  224 (415)
                      +++.. .......+     .+.++|++++..|+.|... ..++.+++.|+++++.+.     ++..+++.++++++|++.
T Consensus       288 ~~~~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~~-~~~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~  361 (652)
T TIGR01217       288 GTLVQHLKEHGLHC-----DLGPGDRLFYYTTTGWMMW-NWLVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFG  361 (652)
T ss_pred             HHHHHHHHHHHhcc-----CCCCCcEEEEeCCcchhhh-HHHHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEe
Confidence            87643 33332223     6788999999999999754 335578999999999753     678999999999999987


Q ss_pred             eCcHHHHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCH
Q 014951          225 GVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPI  304 (415)
Q Consensus       225 ~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~  304 (415)
                      .+|.+++.+.+. .  .                               .+ ....++        ++||.+++||+++++
T Consensus       362 ~~p~~~~~l~~~-~--~-------------------------------~~-~~~~~l--------~sLr~i~~gGe~l~~  398 (652)
T TIGR01217       362 TSAKYVMACRKA-G--V-------------------------------HP-ARTHDL--------SALQCVASTGSPLPP  398 (652)
T ss_pred             cCHHHHHHHHhc-C--C-------------------------------Cc-cccCCh--------hheeEEEeecCCCCH
Confidence            777776655320 0  0                               00 011112        389999999999999


Q ss_pred             HHHHHHHHhcC--CceEEeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecC--
Q 014951          305 HVEEFLRVTSG--APLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGN--  380 (415)
Q Consensus       305 ~~~~~~~~~~~--~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~--  380 (415)
                      ++.+++.+.++  ..+.+.||+||++.......+......+++|.|.+|++++|+| +++..+   .|+.|||+++||  
T Consensus       399 ~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~v~ivd-~~g~~~---~g~~GEl~v~gp~p  474 (652)
T TIGR01217       399 DGFRWVYDEIKADVWLASISGGTDICSCFAGANPTLPVHIGEIQAPGLGTAVQSWD-PEGKPV---TGEVGELVCTNPMP  474 (652)
T ss_pred             HHHHHHHHHhCCCceEEeccCHHHHhccccCCCCCCCCcCCccCCCcCCCceEEEC-CCCCCC---CCCccEEEEecCCC
Confidence            99999988876  4577899999975433322222222348899999999999999 777654   379999999996  


Q ss_pred             CccccccCCchhhh--hh-h--cCCceecCceEEEcCCCC
Q 014951          381 TLFSGYYKRPDLTE--EV-I--VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       381 ~~~~gY~~~~~~~~--~~-~--~~g~~~TGDlg~~d~~G~  415 (415)
                      +++.|||++++.+.  +. |  .+|||+|||+|++|+||+
T Consensus       475 ~~~~gy~~~~~~t~~~~~~~~~~~g~~~tGDlg~~d~dG~  514 (652)
T TIGR01217       475 SMPIRFWNDPDGSKYRDAYFDTYPGVWRHGDWITLTPRGG  514 (652)
T ss_pred             ccccceeCCCccchhHHhhhcCCCCEEEcCCcEEECCCCc
Confidence            68999999998654  23 2  268999999999999996

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK06060 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.1e-47  Score=387.04  Aligned_cols=327  Identities=20%  Similarity=0.275  Sum_probs=261.0

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |.++|+++||+|+++++|+++++++++||+++|++++|++|.++.+++.+++++++++++|++.+....+...       
T Consensus        47 L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~aG~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-------  119 (705)
T PRK06060         47 LRNRGLSSGDRVLLCLPDSPDLVQLLLACLARGVMAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQPS-------  119 (705)
T ss_pred             HHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhccc-------
Confidence            4578999999999999999999999999999999999999999999999999999999999987544332110       


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcC--CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLG--TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS  158 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~  158 (415)
                        .++                     ...++....  ..+....+..++++++++|||||||.||+|.++|+++...+..
T Consensus       120 --~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~  176 (705)
T PRK06060        120 --RVA---------------------EAAELMSEAARVAPGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDA  176 (705)
T ss_pred             --ccc---------------------hhhhhhhhccccCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHH
Confidence              000                     000111000  0111122345789999999999999999999999999887765


Q ss_pred             hh-hhhhhccccCCCCCEEEEeCChhhHHHHH-HHHHhhhcCcEEEEeCC--CHHHHHHHHHhhCCeEEEeCcHHHHHHH
Q 014951          159 VD-QMFVVTGKVCSEEDTYFSFLPLAHIYDQI-IETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIY  234 (415)
Q Consensus       159 ~~-~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~vv~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~  234 (415)
                      +. ..+     .+...|++++..|++|.+++. .++.++..|+++++.+.  ++..++..++++++|+++++|+++..++
T Consensus       177 ~~~~~~-----~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~  251 (705)
T PRK06060        177 MCRKAL-----RLTPEDTGLCSARMYFAYGLGNSVWFPLATGGSAVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVI  251 (705)
T ss_pred             HHHHhh-----CCCCcceeEEeccchhhcchhHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHH
Confidence            43 223     667889999999999988875 46778999999998864  8888999999999999999999998876


Q ss_pred             HHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhc
Q 014951          235 TGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS  314 (415)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~  314 (415)
                      +....                                       .+        .+++|.+++||+++++++.+.+.+.+
T Consensus       252 ~~~~~---------------------------------------~~--------~~slr~i~~gGe~l~~~~~~~~~~~~  284 (705)
T PRK06060        252 DSCSP---------------------------------------DS--------FRSLRCVVSAGEALELGLAERLMEFF  284 (705)
T ss_pred             Hhccc---------------------------------------cc--------ccceeEEEEecCcCCHHHHHHHHHHc
Confidence            42100                                       00        13799999999999999999999888


Q ss_pred             C-CceEEeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhh
Q 014951          315 G-APLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLT  393 (415)
Q Consensus       315 ~-~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~  393 (415)
                      + .++++.||+||++..+.....+.. ..+++|+|+++++++|+| +++.  +++.|+.|||+|+|++++.|||++++.+
T Consensus       285 ~~~~~~~~YG~tE~~~~~~~~~~~~~-~~~~iG~p~~~~~v~i~d-~~g~--~~~~g~~GEl~i~g~~v~~GY~~~~~~~  360 (705)
T PRK06060        285 GGIPILDGIGSTEVGQTFVSNRVDEW-RLGTLGRVLPPYEIRVVA-PDGT--TAGPGVEGDLWVRGPAIAKGYWNRPDSP  360 (705)
T ss_pred             CCCceEeeeeccccCceEEeccCCCC-CcCcccccCCCcEEEEEC-CCCC--CCCCCCceEEEEccchhhhhhhCCCccc
Confidence            4 799999999999866544333222 347899999999999999 6664  4556799999999999999999999865


Q ss_pred             hhhhcCCceecCceEEEcCCCC
Q 014951          394 EEVIVDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       394 ~~~~~~g~~~TGDlg~~d~~G~  415 (415)
                      ..  .+|||+|||+|++|+||+
T Consensus       361 ~~--~~~~~~TGDl~~~~~dG~  380 (705)
T PRK06060        361 VA--NEGWLDTRDRVCIDSDGW  380 (705)
T ss_pred             cc--CCCcEECCeeEEECCCce
Confidence            32  479999999999999985

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=100.00  E-value=3.9e-47  Score=371.60  Aligned_cols=350  Identities=19%  Similarity=0.206  Sum_probs=271.0

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChh----hhhhcCcc
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP----SILSCLPR   76 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~----~~~~~~~~   76 (415)
                      |.+.|+++||+|+++++|+++++++++||+++|++++++++..+.+++.++++.+++++++++.....    .+......
T Consensus        65 L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~  144 (527)
T TIGR02275        65 LTKLGIGQGDTAVVQLPNIAEFYIVFFALLKLGIAPVLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQS  144 (527)
T ss_pred             HHHcCCCCCCEEEEECCCcHHHHHHHHHHHHcCeEEeccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHh
Confidence            45789999999999999999999999999999999999999999999999999999999999875421    11111111


Q ss_pred             CCCCccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHh
Q 014951           77 CCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEV  156 (415)
Q Consensus        77 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~  156 (415)
                      ..+..+.++.......            .....................++++++++|||||||.||+|++||.++..++
T Consensus       145 ~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~  212 (527)
T TIGR02275       145 KLPTLRNIIVAGQTRV------------EAELFLWLESPAEPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSV  212 (527)
T ss_pred             hCCcceEEEEecCCCC------------cchhhHHhhCcCccccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHH
Confidence            1123344444322100            0001111111111122334567899999999999999999999999999888


Q ss_pred             hhhhhhhhhccccCCCCCEEEEeCChhhHHHHHH--HHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHHH
Q 014951          157 LSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII--ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRI  233 (415)
Q Consensus       157 ~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~--~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l  233 (415)
                      ......+     .+..+|++++.+|++|.+++..  .+.+++.|+++++.+. ++..+++.++++++|++.++|.++..+
T Consensus       213 ~~~~~~~-----~~~~~d~~l~~~P~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l  287 (527)
T TIGR02275       213 RRSVEIC-----WLTQQTRYLCALPAAHNYPLSSPGALGVFYAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALW  287 (527)
T ss_pred             HHHHhhc-----CCCcCCEEEECCChHhhhhhhHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHH
Confidence            7766555     6778999999999999998764  6678899999988765 899999999999999999999999887


Q ss_pred             HHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHh
Q 014951          234 YTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVT  313 (415)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~  313 (415)
                      .+......                                     .+        .+++|.+++||+++++++.+++.+.
T Consensus       288 ~~~~~~~~-------------------------------------~~--------~~~lr~~~~gG~~l~~~~~~~~~~~  322 (527)
T TIGR02275       288 MQAASKSR-------------------------------------YD--------LSSLKLLQVGGAKFSEAAARRVPAV  322 (527)
T ss_pred             HhCccccC-------------------------------------CC--------ccceEEEEEcCCCCCHHHHHHHHHH
Confidence            65221100                                     00        1379999999999999999999998


Q ss_pred             cCCceEEeeccCCCCceeeeecCCcccccCcccccc-cCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchh
Q 014951          314 SGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPM-TTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDL  392 (415)
Q Consensus       314 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~-~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~  392 (415)
                      ++.++++.||+||++..............+++|+|+ +++.++|+| +++.  +++.|+.|||+++|+.++.||+++++.
T Consensus       323 ~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d-~~g~--~~~~g~~Gei~v~g~~~~~gY~~~~~~  399 (527)
T TIGR02275       323 FGCQLQQVFGMAEGLVNYTRLDDPAEIIFTTQGRPMSPDDEVRVVD-DHGN--PVAPGETGMLLTRGPYTFRGYYKAPEH  399 (527)
T ss_pred             hCCeEEeeeccCccCccccCCCCccccccccCCCCCCCCceEEEEC-CCCC--CCCCCCceEEEecCCccchhhcCChhH
Confidence            999999999999965433221111122346899999 589999999 6665  445679999999999999999999999


Q ss_pred             hhhhh-cCCceecCceEEEcCCCC
Q 014951          393 TEEVI-VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       393 ~~~~~-~~g~~~TGDlg~~d~~G~  415 (415)
                      +.+.| .+|||+|||+|++|+||+
T Consensus       400 ~~~~~~~dg~~~TGDl~~~~~~g~  423 (527)
T TIGR02275       400 NAAAFDAEGFYYTGDLVRLTPEGY  423 (527)
T ss_pred             hHhhcCcCCCEEcCceEEEcCCcc
Confidence            98888 689999999999999985

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.6e-47  Score=381.49  Aligned_cols=358  Identities=20%  Similarity=0.218  Sum_probs=267.2

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCCh---------hhhh
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI---------PSIL   71 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~   71 (415)
                      |++.|+++||+|+++++|++++++++|||+++|++++|+++.++++++.++++.++++++|+++...         +.+.
T Consensus       131 L~~~Gv~~gd~V~i~~~n~~e~v~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~  210 (655)
T PRK03584        131 LRALGVGPGDRVAAYLPNIPETVVAMLATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVA  210 (655)
T ss_pred             HHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHH
Confidence            4578999999999999999999999999999999999999999999999999999999999987532         2222


Q ss_pred             hcCccCCCCccEEEEecCCCchhhHHhhhcCceeecHHHHHhcC-CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecH
Q 014951           72 SCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQ  150 (415)
Q Consensus        72 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~  150 (415)
                      .... ..+.++.++.++......   ..........|+++.... .......+...+++++|+|||||||.||||++||.
T Consensus       211 ~~~~-~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~  286 (655)
T PRK03584        211 ELRA-ALPSLEHVVVVPYLGPAA---AAAALPGALLWEDFLAPAEAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHG  286 (655)
T ss_pred             HHHh-cCCCccEEEEEecCCCcc---cccccCCcccHHHHhhccccCCCCceecCCCCcEEEEecCCCCCCCceEEECcc
Confidence            2211 123344555554321100   000111234466655422 11222344567999999999999999999999999


Q ss_pred             HHHHH-hhhhhhhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC-----CHHHHHHHHHhhCCeEEE
Q 014951          151 AIVAE-VLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFS  224 (415)
Q Consensus       151 ~l~~~-~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~-----~~~~~~~~i~~~~~t~~~  224 (415)
                      +++.+ .......+     .+.++|++++..++.|..+. ..+.+++.|+++++.+.     ++..+++.++++++|++.
T Consensus       287 ~~~~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~~~-~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~  360 (655)
T PRK03584        287 GILLEHLKELGLHC-----DLGPGDRFFWYTTCGWMMWN-WLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFG  360 (655)
T ss_pred             HHHHHHHHHHHHhc-----CCCCCCEEEEcCCchHHhHH-HHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEE
Confidence            87644 33333333     67889999999999987543 45678999999998752     789999999999999999


Q ss_pred             eCcHHHHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCH
Q 014951          225 GVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPI  304 (415)
Q Consensus       225 ~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~  304 (415)
                      ++|++++.+.+.-.                                  .+ ....++        ++||.+++||+++++
T Consensus       361 ~~P~~~~~l~~~~~----------------------------------~~-~~~~~l--------~sLr~i~~~Ge~l~~  397 (655)
T PRK03584        361 TSAKYLDACEKAGL----------------------------------VP-GETHDL--------SALRTIGSTGSPLPP  397 (655)
T ss_pred             cCHHHHHHHHhcCC----------------------------------Cc-cccCCh--------hheEEEEEecCCCCH
Confidence            99999988754100                                  00 000111        389999999999999


Q ss_pred             HHHHHHHHhc--CCceEEeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecC--
Q 014951          305 HVEEFLRVTS--GAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGN--  380 (415)
Q Consensus       305 ~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~--  380 (415)
                      ++.+++.+.+  ++.+.+.||+||++..+....+......+++|.|.+|++++|+| +++..+   .++.|||+|+||  
T Consensus       398 ~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~~~ivd-~~g~~~---~g~~GeL~v~gp~p  473 (655)
T PRK03584        398 EGFDWVYEHVKADVWLASISGGTDICSCFVGGNPLLPVYRGEIQCRGLGMAVEAWD-EDGRPV---VGEVGELVCTKPFP  473 (655)
T ss_pred             HHHHHHHHHhCCCceEEeccChHhhhcccccCCCCCCcCCCccCCCcCCceeEEEC-CCCCCC---CCCceEEEEccCCC
Confidence            9999999887  47899999999986544332222223358899999999999999 777644   569999999996  


Q ss_pred             CccccccCCchhhh--hhh---cCCceecCceEEEcCCCC
Q 014951          381 TLFSGYYKRPDLTE--EVI---VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       381 ~~~~gY~~~~~~~~--~~~---~~g~~~TGDlg~~d~~G~  415 (415)
                      +++.|||++++.+.  ..+   .+|||+|||+|++|+||+
T Consensus       474 ~~~~gy~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~  513 (655)
T PRK03584        474 SMPLGFWNDPDGSRYRDAYFDTFPGVWRHGDWIEITEHGG  513 (655)
T ss_pred             CCcceeeCCCccchHHHhhhccCCCEeecCCeEEECCCCe
Confidence            78999999997543  222   268999999999999995

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.9e-47  Score=372.69  Aligned_cols=350  Identities=25%  Similarity=0.319  Sum_probs=280.6

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |.+.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++..+++.++++++|++......+..... ..+.
T Consensus        59 L~~~g~~~g~~V~i~~~~~~~~~~~~~a~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~-~~~~  137 (542)
T PRK07786         59 LSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRD-IVPL  137 (542)
T ss_pred             HHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHhhh-ccCc
Confidence            346799999999999999999999999999999999999999999999999999999999999876655433222 2234


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD  160 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~  160 (415)
                      .+.++...+...          .....++++...............+++++++|||||||.||+|.++|+++...+....
T Consensus       138 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~  207 (542)
T PRK07786        138 LSTVVVAGGSSD----------DSVLGYEDLLAEAGPAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCL  207 (542)
T ss_pred             cceEEEecCCCc----------ccccCHHHHhhccCCCCCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHH
Confidence            455555543210          1224555555433222223345567899999999999999999999999988877655


Q ss_pred             hhhhhccccC-CCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC---CHHHHHHHHHhhCCeEEEeCcHHHHHHHHH
Q 014951          161 QMFVVTGKVC-SEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG---DVRYLMEDIQELKPTMFSGVPRVYDRIYTG  236 (415)
Q Consensus       161 ~~~~~~~~~~-~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~  236 (415)
                      ..+     .+ ...+++++..|++|.+++..++.++..|+++++.+.   ++..+++.|+++++|.++++|+++..+...
T Consensus       208 ~~~-----~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~  282 (542)
T PRK07786        208 RTN-----GADINSDVGFVGVPLFHIAGIGSMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAE  282 (542)
T ss_pred             Hhc-----CCCCCCceEEEecchHHHHHHHHHHHHHHccCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhC
Confidence            444     33 567899999999999998778889999999998652   899999999999999999999999988642


Q ss_pred             HHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhc-C
Q 014951          237 ISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-G  315 (415)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~-~  315 (415)
                      ....                                   ..           ..++|.+++||+++++++.+++.+.+ +
T Consensus       283 ~~~~-----------------------------------~~-----------~~~lr~i~~gg~~~~~~~~~~~~~~~~~  316 (542)
T PRK07786        283 QQAR-----------------------------------PR-----------DLALRVLSWGAAPASDTLLRQMAATFPE  316 (542)
T ss_pred             cccC-----------------------------------cc-----------CcceEEEEECCCCCCHHHHHHHHHHcCC
Confidence            1100                                   00           01689999999999999999999888 6


Q ss_pred             CceEEeeccCCCCceeeeecCC-cccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhhh
Q 014951          316 APLTQGYGLTESCSGCFTSLAD-VFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTE  394 (415)
Q Consensus       316 ~~~~~~yG~tE~~~~~~~~~~~-~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~  394 (415)
                      .++++.||+||++.+.+....+ .....+++|+|++++.++|+| +++..  ++.++.|||+++|+.++.||+++++.+.
T Consensus       317 ~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~--~~~g~~Gel~v~g~~~~~gy~~~~~~~~  393 (542)
T PRK07786        317 AQILAAFGQTEMSPVTCMLLGEDAIRKLGSVGKVIPTVAARVVD-ENMND--VPVGEVGEIVYRAPTLMSGYWNNPEATA  393 (542)
T ss_pred             CeEEeeecccccccceEecCcccccccCCCccccCCCceEEEEC-CCCCC--CcCCCceEEEEEChhhhhhhcCCHHHHH
Confidence            8999999999998765543322 223457899999999999999 76654  4566999999999999999999999999


Q ss_pred             hhhcCCceecCceEEEcCCCC
Q 014951          395 EVIVDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       395 ~~~~~g~~~TGDlg~~d~~G~  415 (415)
                      ..|.+|||+|||++++|+||+
T Consensus       394 ~~f~~~~~~TGDl~~~~~~g~  414 (542)
T PRK07786        394 EAFAGGWFHSGDLVRQDEEGY  414 (542)
T ss_pred             HHhhCCcccccceEEEcCCce
Confidence            999999999999999999984

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=4.3e-47  Score=367.86  Aligned_cols=329  Identities=26%  Similarity=0.398  Sum_probs=269.3

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |.+.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++..+++.++++++|+++.....+.....     
T Consensus        44 L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~-----  118 (483)
T PRK03640         44 LAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGIS-----  118 (483)
T ss_pred             HHHcCCCCCCEEEEECCCCHHHHHHHHHHHhCCcEEEecCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhcc-----
Confidence            356799999999999999999999999999999999999999999999999999999999998765443321100     


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcC-CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSV  159 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~  159 (415)
                                               ..++++.... ..........++++++++|||||||.||+|.+||.++...+...
T Consensus       119 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~  173 (483)
T PRK03640        119 -------------------------VKFAELMNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGS  173 (483)
T ss_pred             -------------------------ccHHHHhhcccccCCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHH
Confidence                                     0122222221 11112233467899999999999999999999999998876655


Q ss_pred             hhhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHH
Q 014951          160 DQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGIS  238 (415)
Q Consensus       160 ~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  238 (415)
                      ...+     .+..+|++++.+|++|.+++..++.++..|+++++.+. ++..+++.++++++|++.++|+++..+.+.+.
T Consensus       174 ~~~~-----~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~  248 (483)
T PRK03640        174 ALNL-----GLTEDDCWLAAVPIFHISGLSILMRSVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERLG  248 (483)
T ss_pred             HHhc-----CCCcCcEEEEecCHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcC
Confidence            4444     67899999999999999998888888999999999877 99999999999999999999999998864211


Q ss_pred             HhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCCce
Q 014951          239 NKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPL  318 (415)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~  318 (415)
                      ..                                              ....++|.+++||+++++.+.+.+++ +++++
T Consensus       249 ~~----------------------------------------------~~~~~lr~~~~~g~~~~~~~~~~~~~-~~~~~  281 (483)
T PRK03640        249 EG----------------------------------------------TYPSSFRCMLLGGGPAPKPLLEQCKE-KGIPV  281 (483)
T ss_pred             cc----------------------------------------------ccCCcceEEEEcCCCCCHHHHHHHHH-hCCCe
Confidence            00                                              00138999999999999999998886 59999


Q ss_pred             EEeeccCCCCceeee-ecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhhhhhh
Q 014951          319 TQGYGLTESCSGCFT-SLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI  397 (415)
Q Consensus       319 ~~~yG~tE~~~~~~~-~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~~~~  397 (415)
                      ++.||+||++..+.. .........+++|+|+++++++|.+ +.   .+++.++.|||+++||.++.||+++++.+.+.|
T Consensus       282 ~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~~-~~---~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~  357 (483)
T PRK03640        282 YQSYGMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIEK-DG---VVVPPFEEGEIVVKGPNVTKGYLNREDATRETF  357 (483)
T ss_pred             eeeeccCcccccccccCcccccccCCCcccccCCcEEEEec-CC---CcCCCCCceEEEEECcchhhhhcCCHHHHHHHH
Confidence            999999998764433 2222334458999999999999988 43   355677999999999999999999999999999


Q ss_pred             cCCceecCceEEEcCCCC
Q 014951          398 VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       398 ~~g~~~TGDlg~~d~~G~  415 (415)
                      .+|||+|||++++|+||+
T Consensus       358 ~~~~~~tGDl~~~~~~g~  375 (483)
T PRK03640        358 QDGWFKTGDIGYLDEEGF  375 (483)
T ss_pred             hcCCeeccceEEEcCCCC
Confidence            999999999999999985

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=7.9e-47  Score=373.05  Aligned_cols=361  Identities=21%  Similarity=0.322  Sum_probs=278.7

Q ss_pred             CCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccE
Q 014951            4 RGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKT   83 (415)
Q Consensus         4 ~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~   83 (415)
                      .|+++||+|+++++|+++++++++||+++|+++++++|..+.+++.++++.++++++|++....+.+...... ....+.
T Consensus        59 ~g~~~gd~V~~~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~  137 (576)
T PRK05620         59 LGITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKE-CPCVRA  137 (576)
T ss_pred             cCCCCCCEEEEEeCCCHHHHHHHHHHHhcCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhh-CccccE
Confidence            6999999999999999999999999999999999999999999999999999999999998877666544333 234455


Q ss_pred             EEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhhhhh
Q 014951           84 IVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF  163 (415)
Q Consensus        84 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~  163 (415)
                      ++..+...................+.++..............++++++++|||||||.||+|.++|+++.......... 
T Consensus       138 i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~-  216 (576)
T PRK05620        138 VVFIGPSDADSAAAHMPEGIKVYSYEALLDGRSTVYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTT-  216 (576)
T ss_pred             EEEecCcccccchhccccccccccHHHHhhcCCCcCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhh-
Confidence            5555432111000001112234567777654322222344567899999999999999999999999986554432111 


Q ss_pred             hhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC--CHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHHHhh
Q 014951          164 VVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKI  241 (415)
Q Consensus       164 ~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~  241 (415)
                        ....+..++++++.+|++|.+++...+.++..|+++++...  ++..+++.++++++|.++++|+++..++.......
T Consensus       217 --~~~~~~~~~~~l~~~pl~h~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~  294 (576)
T PRK05620        217 --DSLAVTHGESFLCCVPIYHVLSWGVPLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNP  294 (576)
T ss_pred             --hhcCCCCCCeEEEeCChHHhhhhHHHHHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccC
Confidence              11256789999999999999998878888999999988753  89999999999999999999999988764221000


Q ss_pred             hcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCCceEEe
Q 014951          242 SSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQG  321 (415)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~~~~  321 (415)
                                                           .+        ..++|.+++||+++++++.+.+.+.+++++++.
T Consensus       295 -------------------------------------~~--------~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~  329 (576)
T PRK05620        295 -------------------------------------PE--------RMSLQEIYVGGSAVPPILIKAWEERYGVDVVHV  329 (576)
T ss_pred             -------------------------------------cc--------cCceeEEEEcCCCCCHHHHHHHHHHhCCceeee
Confidence                                                 00        026999999999999999999998899999999


Q ss_pred             eccCCCCceeeeecCCcc-------cccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhh-
Q 014951          322 YGLTESCSGCFTSLADVF-------NMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLT-  393 (415)
Q Consensus       322 yG~tE~~~~~~~~~~~~~-------~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~-  393 (415)
                      ||+||++..+....+...       ....++|++.++++++|++ + +...+...++.|||+++|+.++.|||++++.+ 
T Consensus       330 YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~-g~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~t~  407 (576)
T PRK05620        330 WGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVN-D-GQVMESTDRNEGEIQVRGNWVTASYYHSPTEEG  407 (576)
T ss_pred             ccccccccceeeeccCCccccccccccccccCCcCCceeEEEec-C-CccccCCCCCceEEEEEcCcccccccCCccccc
Confidence            999999876654432210       1124789999999999998 5 55455455688999999999999999999887 


Q ss_pred             ---------------hhhh-cCCceecCceEEEcCCCC
Q 014951          394 ---------------EEVI-VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       394 ---------------~~~~-~~g~~~TGDlg~~d~~G~  415 (415)
                                     ..+| .+|||+|||+|++|+||+
T Consensus       408 ~~~~~~f~~~~~~~~~~~~~~~g~~~TGD~~~~~~dg~  445 (576)
T PRK05620        408 GGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGF  445 (576)
T ss_pred             cccccccccccchhhhcccccCCcEecCceEEEcCCce
Confidence                           2234 478999999999999984

>PRK06839 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.3e-47  Score=369.14  Aligned_cols=336  Identities=26%  Similarity=0.360  Sum_probs=270.4

Q ss_pred             CCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccE
Q 014951            4 RGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKT   83 (415)
Q Consensus         4 ~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~   83 (415)
                      .|+++||+|+++++|+++++++++||+++|++++|+++.++.+++..+++.+++++++++++..+.+......  .....
T Consensus        48 ~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~  125 (496)
T PRK06839         48 LNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKV--SYVQR  125 (496)
T ss_pred             cCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhhc--cCcce
Confidence            6999999999999999999999999999999999999999999999999999999999998766554432221  11122


Q ss_pred             EEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhhhhh
Q 014951           84 IVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF  163 (415)
Q Consensus        84 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~  163 (415)
                      ++.+.                  ++++.....  .....+..++++++++|||||||.||+|.++|.++..........+
T Consensus       126 ~~~~~------------------~~~~~~~~~--~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~  185 (496)
T PRK06839        126 VISIT------------------SLKEIEDRK--IDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAI  185 (496)
T ss_pred             EEEec------------------chHhhhccC--CCCCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHc
Confidence            22222                  122222211  1122345568999999999999999999999999876655443333


Q ss_pred             hhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHHHhh
Q 014951          164 VVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKI  241 (415)
Q Consensus       164 ~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~  241 (415)
                           .+..+|++++.+|++|.+++.. .+.++..|+++++.+. ++.++++.++++++|++.++|++++.+++...   
T Consensus       186 -----~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---  257 (496)
T PRK06839        186 -----DLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSK---  257 (496)
T ss_pred             -----CCCCCCeEEEeeCCcchhhHHHHHHHHHhcCcEEEEccCCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcc---
Confidence                 6678999999999999998875 5678999999988766 99999999999999999999999998865211   


Q ss_pred             hcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCCceEEe
Q 014951          242 SSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQG  321 (415)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~~~~  321 (415)
                                                        ....+        .+++|.+++||+++++++.+.+++. +.++.+.
T Consensus       258 ----------------------------------~~~~~--------~~~lr~~~~gG~~~~~~~~~~~~~~-g~~~~~~  294 (496)
T PRK06839        258 ----------------------------------FETTN--------LQSVRWFYNGGAPCPEELMREFIDR-GFLFGQG  294 (496)
T ss_pred             ----------------------------------cccCC--------CcccceEEECCCCCCHHHHHHHHHh-CCeeEee
Confidence                                              00001        1379999999999999999999875 8999999


Q ss_pred             eccCCCCceeeeecCC-cccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhhhhhhcCC
Q 014951          322 YGLTESCSGCFTSLAD-VFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDG  400 (415)
Q Consensus       322 yG~tE~~~~~~~~~~~-~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~~~~~~g  400 (415)
                      ||+||++..++..... .....+++|+|+++++++|+| +++..  ++.|+.|||+|+|+.++.||+++++.+...+.+|
T Consensus       295 YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~~~~--~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g  371 (496)
T PRK06839        295 FGMTETSPTVFMLSEEDARRKVGSIGKPVLFCDYELID-ENKNK--VEVGEVGELLIRGPNVMKEYWNRPDATEETIQDG  371 (496)
T ss_pred             ccCCCCCcceEecccccccccCCCCcccCCCceEEEEC-CCcCC--CCCCCceEEEEECCCcchhhcCChHHHHHHHcCC
Confidence            9999998755433222 223458999999999999999 77764  5677999999999999999999999999888999


Q ss_pred             ceecCceEEEcCCCC
Q 014951          401 WFHTGDIGEWQPMEL  415 (415)
Q Consensus       401 ~~~TGDlg~~d~~G~  415 (415)
                      ||+|||+|++|+||+
T Consensus       372 ~~~TGDl~~~~~~g~  386 (496)
T PRK06839        372 WLCTGDLARVDEDGF  386 (496)
T ss_pred             CeeecceEEEcCCCc
Confidence            999999999999985

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=100.00  E-value=1.1e-46  Score=369.42  Aligned_cols=347  Identities=22%  Similarity=0.266  Sum_probs=272.5

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChh-----hhhhcCc
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP-----SILSCLP   75 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~-----~~~~~~~   75 (415)
                      |++.|+++||+|+++++|+++++++++||+++|++++|++|..+.+++.++++.++++++|+++....     .......
T Consensus        70 L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~  149 (538)
T TIGR03208        70 LARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQS  149 (538)
T ss_pred             HHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhc
Confidence            45679999999999999999999999999999999999999999999999999999999999876421     1111111


Q ss_pred             cCCCCccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCC----C----CCCCCCCCCCCeEEEEecCCCCCCCceEEe
Q 014951           76 RCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT----L----DCELPPKKKTNISTIMYTSGTTGEPKGVVL  147 (415)
Q Consensus        76 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~  147 (415)
                       ..+..+.++..+....             ..+++++....    .    ........++++++++|||||||.||+|++
T Consensus       150 -~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~  215 (538)
T TIGR03208       150 -KLPALRQVVVIDGDGD-------------DSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMH  215 (538)
T ss_pred             -cCCcceEEEEecCCCC-------------cCHHHHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEe
Confidence             1233345555543211             12222221110    0    011123567899999999999999999999


Q ss_pred             ecHHHHHHhhhhhhhhhhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEe
Q 014951          148 TNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSG  225 (415)
Q Consensus       148 th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~  225 (415)
                      +|.++...+......+     .+..+|++++.+|++|..++.. ++.+++.|+++++.+. ++..+++.++++++|++.+
T Consensus       216 s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~  290 (538)
T TIGR03208       216 TANTLFSNIHPYAERL-----ELGGGDVILMASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMA  290 (538)
T ss_pred             ehHHHHHHHHHHHhhc-----CCCCCCeEEEeCCchhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEec
Confidence            9999998887766555     6778999999999999988765 6778999999988776 9999999999999999999


Q ss_pred             CcHHHHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHH
Q 014951          226 VPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIH  305 (415)
Q Consensus       226 ~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~  305 (415)
                      +|.++..+...+....                                     .        ..+++|.+++||++++++
T Consensus       291 ~p~~~~~l~~~~~~~~-------------------------------------~--------~~~~l~~~~~gG~~~~~~  325 (538)
T TIGR03208       291 STPFLTDLCRAVKESG-------------------------------------A--------PVPSLFTFLCAGAPIPGI  325 (538)
T ss_pred             CHHHHHHHHhchhccC-------------------------------------C--------CCCcceEEEEcCCCCCHH
Confidence            9999988754221100                                     0        013799999999999999


Q ss_pred             HHHHHHHhcCCceEEeeccCCCCceeeeecCCcc-cccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccc
Q 014951          306 VEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVF-NMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFS  384 (415)
Q Consensus       306 ~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~-~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~  384 (415)
                      +.+++.+.++.++++.||+||++.+.+....... ....++|+|++|++++|++ +++..  ++.|+.|||+++|+.++.
T Consensus       326 ~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~~-~~~~~--~~~g~~Gel~v~g~~~~~  402 (538)
T TIGR03208       326 LVERAWELLGALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLPGVEVKVID-ANGAK--LSQGETGRLLVRGCSNFG  402 (538)
T ss_pred             HHHHHHHHcCCeEEeeeccCcCCCccccCcccchhhccCcccccCCCCEEEEEC-CCCCC--CcCCCCcEEEEecCcccc
Confidence            9999988899999999999999876654433222 2236789999999999999 66654  456799999999999999


Q ss_pred             cccCCchhhhhhhcCCceecCceEEEcCCCC
Q 014951          385 GYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       385 gY~~~~~~~~~~~~~g~~~TGDlg~~d~~G~  415 (415)
                      ||+++++.+.. ..+|||+|||+|++|+||+
T Consensus       403 gy~~~~~~~~~-~~~~~~~TGD~~~~~~~g~  432 (538)
T TIGR03208       403 GYLKRPHLNST-DAEGWFDTGDLAFQDAEGY  432 (538)
T ss_pred             cccCCcccccc-cCCCceeccceEEECCCCc
Confidence            99999987653 3689999999999999985

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK08316 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7.4e-47  Score=369.96  Aligned_cols=354  Identities=23%  Similarity=0.346  Sum_probs=281.3

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |.+.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++..+++.++++++|++.+....+........  
T Consensus        53 L~~~gi~~~~~V~l~~~~~~~~~~~~~a~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~--  130 (523)
T PRK08316         53 LLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLP--  130 (523)
T ss_pred             HHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcC--
Confidence            346799999999999999999999999999999999999999999999999999999999999887766654332211  


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD  160 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~  160 (415)
                      ...+........      ......+..+.++...............+++++++|||||||.||+|.+||.++........
T Consensus       131 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~  204 (523)
T PRK08316        131 VDTLILSLVLGG------REAPGGWLDFADWAEAGSVAEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCI  204 (523)
T ss_pred             ccceeeeecccc------cccccchhhHHHHHhcCCCccCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHH
Confidence            111111110000      00112244555555433222234456778999999999999999999999999998877655


Q ss_pred             hhhhhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHH
Q 014951          161 QMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGIS  238 (415)
Q Consensus       161 ~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  238 (415)
                      ..+     .+++++++++.+|++|..++.. ++.+++.|+++++.+. ++..+++.++++++|++.++|.++..+.+...
T Consensus       205 ~~~-----~~~~~~~~~~~~p~~h~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  279 (523)
T PRK08316        205 VAG-----DMSADDIPLHALPLYHCAQLDVFLGPYLYVGATNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPD  279 (523)
T ss_pred             HHh-----CCCCCceEEEccCCchhhhHHHHHHHHHhcCceEEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcc
Confidence            554     6788999999999999998875 5567889999999865 99999999999999999999999988754110


Q ss_pred             HhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhc-CCc
Q 014951          239 NKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAP  317 (415)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~-~~~  317 (415)
                                                           ....++        +++|.+++||++++.++.+.+++.+ +.+
T Consensus       280 -------------------------------------~~~~~~--------~~l~~~~~gg~~~~~~~~~~~~~~~~~~~  314 (523)
T PRK08316        280 -------------------------------------FDTRDL--------SSLRKGYYGASIMPVEVLKELRERLPGLR  314 (523)
T ss_pred             -------------------------------------cccCCc--------ccceEEEEcCCcCCHHHHHHHHHHcCCCc
Confidence                                                 000111        3799999999999999999999887 689


Q ss_pred             eEEeeccCCCCceeeeecCCc-ccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhhhhh
Q 014951          318 LTQGYGLTESCSGCFTSLADV-FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEV  396 (415)
Q Consensus       318 ~~~~yG~tE~~~~~~~~~~~~-~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~~~  396 (415)
                      +++.||+||++.+++...... ....+++|+|+++++++|+| +++..  ++.|+.|||+++|+.++.||+++++.+.+.
T Consensus       315 ~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~--~~~g~~Gei~v~~~~~~~~y~~~~~~~~~~  391 (523)
T PRK08316        315 FYNCYGQTEIAPLATVLGPEEHLRRPGSAGRPVLNVETRVVD-DDGND--VAPGEVGEIVHRSPQLMLGYWDDPEKTAEA  391 (523)
T ss_pred             eeeeecccccCccccccCccccccccCCcccCCCCcEEEEEc-CCCCC--CCCCCcceEEEECCchhhhhcCCHHHHHHH
Confidence            999999999988765543322 23358899999999999999 66654  445699999999999999999999999999


Q ss_pred             hcCCceecCceEEEcCCCC
Q 014951          397 IVDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       397 ~~~g~~~TGDlg~~d~~G~  415 (415)
                      |.+|||+|||+|++|+||+
T Consensus       392 ~~~~~~~TGDl~~~~~~g~  410 (523)
T PRK08316        392 FRGGWFHSGDLGVMDEEGY  410 (523)
T ss_pred             hhCCCeeccceEEEcCCce
Confidence            9999999999999999985

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.9e-48  Score=336.27  Aligned_cols=349  Identities=19%  Similarity=0.263  Sum_probs=293.8

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCCh-----hhhhhcCc
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI-----PSILSCLP   75 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~   75 (415)
                      |++.||++||+|.+.++|..++++++||++++|+.+|.--|+....+|.++.+.++++.+|.+....     +...+.+.
T Consensus        70 l~~lGi~~Gd~vlvQLpN~~ef~~~~FALlrlGv~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a  149 (542)
T COG1021          70 LRRLGIKPGDTVLVQLPNVAEFYITFFALLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVA  149 (542)
T ss_pred             HHhcCCCCCCEEEEECCchHHHHHHHHHHHHcCcchhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHh
Confidence            4678999999999999999999999999999999999999999999999999999999999986432     22222232


Q ss_pred             cCCCCccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHH
Q 014951           76 RCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAE  155 (415)
Q Consensus        76 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~  155 (415)
                       ..+.++.+++.++....           ...+..+........+.++.++++++++..+.||||.||-|+.||.....+
T Consensus       150 -~~~tlr~v~v~ge~~~~-----------~~~~~~~~~~a~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ys  217 (542)
T COG1021         150 -KHPTLRHVIVAGEAEHP-----------SVLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYS  217 (542)
T ss_pred             -hCCcceEEEEccCCCCc-----------chhhhhhhCccccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeee
Confidence             33778888888554211           112222222224444567788899999999999999999999999999999


Q ss_pred             hhhhhhhhhhccccCCCCCEEEEeCChhhHHHHHH--HHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHH
Q 014951          156 VLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII--ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDR  232 (415)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~--~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~  232 (415)
                      +....+.+     .+++.+++++.+|..|.+.+..  .+..++.|+++|+.+. +++..+.+|++++||+...+|.+...
T Consensus       218 v~aSaEiC-----~~~~~tvyL~~LP~AHNfplssPG~LGv~~agG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~L  292 (542)
T COG1021         218 VRASAEIC-----GFDQQTVYLCALPAAHNFPLSSPGALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASL  292 (542)
T ss_pred             eeehhhhh-----CcCccceEEEecccccCCCCCCcchhheeeeccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHH
Confidence            99988888     8999999999999999999875  7888999999999987 99999999999999999999999888


Q ss_pred             HHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHH
Q 014951          233 IYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRV  312 (415)
Q Consensus       233 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~  312 (415)
                      +++..+                                     ++..++        +|||.+.+||+.+++++.+.+..
T Consensus       293 Wlqa~e-------------------------------------~~~~~L--------sSLrllQVGGarl~~~~Arrv~~  327 (542)
T COG1021         293 WLQAAE-------------------------------------WERADL--------SSLRLLQVGGARLSATLARRVPA  327 (542)
T ss_pred             HHHhhh-------------------------------------cccCCc--------hheeEEeecCcccCHHHHhhchh
Confidence            766322                                     222233        48999999999999999999999


Q ss_pred             hcCCceEEeeccCCCCceeeeecCCcccc-cCcccccc-cCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCc
Q 014951          313 TSGAPLTQGYGLTESCSGCFTSLADVFNM-IGTVGVPM-TTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRP  390 (415)
Q Consensus       313 ~~~~~~~~~yG~tE~~~~~~~~~~~~~~~-~~~~G~~~-~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~  390 (415)
                      .+|+.+-+.|||.| |.+++...++..+. ..+.|+|+ |.-+++|+| .+|+  ++++||.|+|.++||..++|||+.|
T Consensus       328 ~lgC~LQQVFGMAE-GLvnyTRLDDp~E~i~~TQGrPlsP~DEvrvvD-~dg~--pv~pGE~G~LltRGPYTirGYyrap  403 (542)
T COG1021         328 VLGCQLQQVFGMAE-GLVNYTRLDDPPEIIIHTQGRPLSPDDEVRVVD-ADGN--PVAPGEVGELLTRGPYTIRGYYRAP  403 (542)
T ss_pred             hhCchHHHHhhhhh-hhhcccccCCchHheeecCCCcCCCcceeEEec-CCCC--CCCCCCcceeeecCCeeeeeeccCc
Confidence            99999999999999 55555555555433 46789997 788999999 7775  5567799999999999999999999


Q ss_pred             hhhhhhh-cCCceecCceEEEcCCCC
Q 014951          391 DLTEEVI-VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       391 ~~~~~~~-~~g~~~TGDlg~~d~~G~  415 (415)
                      +.+.++| .+|||+|||++++|+|||
T Consensus       404 ~HNa~aF~a~GFYrsGD~V~~~~dGy  429 (542)
T COG1021         404 EHNARAFDADGFYRSGDLVRRDPDGY  429 (542)
T ss_pred             hhhhhccCcCCceecCceeEecCCce
Confidence            9999999 899999999999999997

>PRK07514 malonyl-CoA synthase; Validated

Probab=100.00  E-value=1.8e-46  Score=365.49  Aligned_cols=345  Identities=24%  Similarity=0.408  Sum_probs=273.2

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |++.|+++||+|+++++|+++++++++||+++|++++|+++..+.+++..+++.++++++|+++.....+......  ..
T Consensus        45 L~~~g~~~gd~v~i~~~~~~e~~v~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~  122 (504)
T PRK07514         45 LVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAA--AG  122 (504)
T ss_pred             HHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhc--cC
Confidence            4567999999999999999999999999999999999999999999999999999999999998776655443221  11


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD  160 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~  160 (415)
                      ...++.++....             ..+.+...............++++++++|||||||.||+|.+||.++...+....
T Consensus       123 ~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~  189 (504)
T PRK07514        123 APHVETLDADGT-------------GSLLEAAAAAPDDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLV  189 (504)
T ss_pred             CceEEEecCCCc-------------ccHHHhhhhcCcccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHH
Confidence            222333332211             0111111111111222345678999999999999999999999999998887665


Q ss_pred             hhhhhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHH
Q 014951          161 QMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGIS  238 (415)
Q Consensus       161 ~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  238 (415)
                      ..+     .+..+|++++.+|++|..++.. .+.+++.|+++++.+. ++..+++.+.  ++|++.++|.++..++... 
T Consensus       190 ~~~-----~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~-  261 (504)
T PRK07514        190 DYW-----RFTPDDVLIHALPIFHTHGLFVATNVALLAGASMIFLPKFDPDAVLALMP--RATVMMGVPTFYTRLLQEP-  261 (504)
T ss_pred             HHh-----CCCCccEEEEecchHHHHHHHHHHHHHHhcCcEEEECCCCCHHHHHHHHH--hheeeecHHHHHHHHHcCC-
Confidence            554     6778999999999999999875 6778999999999877 9999999994  7999999999998875410 


Q ss_pred             HhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCCce
Q 014951          239 NKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPL  318 (415)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~  318 (415)
                                                          ......+        +++|.+++||+++++++.+++.+.++.++
T Consensus       262 ------------------------------------~~~~~~~--------~~lr~~~~gg~~~~~~~~~~~~~~~~~~~  297 (504)
T PRK07514        262 ------------------------------------RLTREAA--------AHMRLFISGSAPLLAETHREFQERTGHAI  297 (504)
T ss_pred             ------------------------------------CCCcccc--------cceeeEEecCCCCCHHHHHHHHHHhCCcc
Confidence                                                0011111        37999999999999999999999999999


Q ss_pred             EEeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhhhhhh-
Q 014951          319 TQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-  397 (415)
Q Consensus       319 ~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~~~~-  397 (415)
                      ++.||+||++......... ....+++|.|+++++++|+| ++++ .+++.|+.|||+++|+.++.||+++++.+.+.| 
T Consensus       298 ~~~YG~tE~~~~~~~~~~~-~~~~~~~G~~~~~~~v~i~d-~~~~-~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~  374 (504)
T PRK07514        298 LERYGMTETNMNTSNPYDG-ERRAGTVGFPLPGVSLRVTD-PETG-AELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFR  374 (504)
T ss_pred             eeecccccccccccCCccc-cccCcccccCCCCcEEEEEE-CCCC-CCCCCCCceEEEEecCCccccccCCchhhhhhcc
Confidence            9999999987654432222 22347899999999999999 4443 455677999999999999999999999999888 


Q ss_pred             cCCceecCceEEEcCCCC
Q 014951          398 VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       398 ~~g~~~TGDlg~~d~~G~  415 (415)
                      .+|||+|||+|++|++|+
T Consensus       375 ~~~~~~TGDl~~~~~~g~  392 (504)
T PRK07514        375 ADGFFITGDLGKIDERGY  392 (504)
T ss_pred             cCCCeeecceEEEcCCcc
Confidence            589999999999999884

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=100.00  E-value=1.7e-46  Score=368.53  Aligned_cols=350  Identities=22%  Similarity=0.350  Sum_probs=270.0

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |.+.|+++||+|+++++|+++++++++||+++|++++|+++..+.+++.++++.++++++|+++.....+....      
T Consensus        72 L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~------  145 (546)
T PLN02330         72 LRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGLG------  145 (546)
T ss_pred             HHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhcC------
Confidence            45679999999999999999999999999999999999999999999999999999999999988766554321      


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCC---CCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTL---DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVL  157 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~  157 (415)
                      . .++.++...          ......|.+++.....   ........++++++++|||||||.||+|+++|.++..++.
T Consensus       146 ~-~~i~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~  214 (546)
T PLN02330        146 L-PVIVLGEEK----------IEGAVNWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLC  214 (546)
T ss_pred             C-cEEEecCCC----------CCCcccHHHHHhhccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHH
Confidence            1 233333211          0112345555533211   1122334578999999999999999999999999987654


Q ss_pred             hhhhhhhhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHHHHH
Q 014951          158 SVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYT  235 (415)
Q Consensus       158 ~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~  235 (415)
                      ..  .+... ......++++.++|++|.+++.. ++.++..|+++++.+. ++..+++.++++++|++.++|+++..+++
T Consensus       215 ~~--~~~~~-~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~  291 (546)
T PLN02330        215 SS--LFSVG-PEMIGQVVTLGLIPFFHIYGITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVK  291 (546)
T ss_pred             HH--hhccC-ccccCceEEEEecChHHHHHHHHHHHHHhhcCCEEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHh
Confidence            32  11111 12234568999999999998874 6778999999988876 99999999999999999999999988754


Q ss_pred             HHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhc-
Q 014951          236 GISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-  314 (415)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~-  314 (415)
                      ..                                     .....++..      .++|.+++||+++++++.+++.+.+ 
T Consensus       292 ~~-------------------------------------~~~~~~~~~------~~l~~i~~~g~~l~~~~~~~~~~~~~  328 (546)
T PLN02330        292 NP-------------------------------------IVEEFDLSK------LKLQAIMTAAAPLAPELLTAFEAKFP  328 (546)
T ss_pred             Cc-------------------------------------cccccccch------heeeeEEEcCCcCCHHHHHHHHHHcC
Confidence            10                                     011111111      1589999999999999999999888 


Q ss_pred             CCceEEeeccCCCCceeeeec-CCc---ccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCc
Q 014951          315 GAPLTQGYGLTESCSGCFTSL-ADV---FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRP  390 (415)
Q Consensus       315 ~~~~~~~yG~tE~~~~~~~~~-~~~---~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~  390 (415)
                      +.++++.||+||++.+..... ...   ....+++|+|+++++++|+| ++++ .+++.|+.|||+++|+.++.||++++
T Consensus       329 ~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d-~~~~-~~~p~g~~Gel~v~g~~~~~gy~~~~  406 (546)
T PLN02330        329 GVQVQEAYGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFID-PDTG-RSLPKNTPGELCVRSQCVMQGYYNNK  406 (546)
T ss_pred             CCeEEecccccccccceecCCCccccccccccCccccccCCcEEEEEe-CCCC-ccCCCCCceEEEEecchhhhhhccCc
Confidence            889999999999876543321 111   12236899999999999999 4333 44566799999999999999999999


Q ss_pred             hhhhhhh-cCCceecCceEEEcCCCC
Q 014951          391 DLTEEVI-VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       391 ~~~~~~~-~~g~~~TGDlg~~d~~G~  415 (415)
                      +.+.+.+ .+|||+|||+|++|+||+
T Consensus       407 ~~~~~~~~~~g~~~TGD~~~~~~dG~  432 (546)
T PLN02330        407 EETDRTIDEDGWLHTGDIGYIDDDGD  432 (546)
T ss_pred             cchhhhccCCCceecccEEEEeCCCc
Confidence            9998887 689999999999999985

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=100.00  E-value=2.5e-46  Score=367.76  Aligned_cols=351  Identities=22%  Similarity=0.297  Sum_probs=274.5

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCCh-----hhhhhcCc
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI-----PSILSCLP   75 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~   75 (415)
                      |++.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++.++++++|+++...     +.+.....
T Consensus        66 l~~~G~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~  145 (547)
T PRK06087         66 LLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQN  145 (547)
T ss_pred             HHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEeccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHh
Confidence            4578999999999999999999999999999999999999999999999999999999999986432     22222222


Q ss_pred             cCCCCccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHH
Q 014951           76 RCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAE  155 (415)
Q Consensus        76 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~  155 (415)
                      . ....+.++.++......         ....+.++...............+++++|+|||||||.||+|.++|.++...
T Consensus       146 ~-~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~  215 (547)
T PRK06087        146 Q-LPQLQQIVGVDKLAPAT---------SSLSLSQIIADYEPLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILAS  215 (547)
T ss_pred             h-CCCCcEEEEeCCcCCCc---------CccCHHHHhccCCcccCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHH
Confidence            1 13344555554322100         1123444433221111223456789999999999999999999999999888


Q ss_pred             hhhhhhhhhhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHHH
Q 014951          156 VLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRI  233 (415)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l  233 (415)
                      ...+...+     .+..+|++++.+|++|.+++.. ++.+++.|+++++.+. ++..+++.++++++|+++++|..+..+
T Consensus       216 ~~~~~~~~-----~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~  290 (547)
T PRK06087        216 ERAYCARL-----NLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDL  290 (547)
T ss_pred             HHHHHHhc-----CCCCCCeEEEecchHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHH
Confidence            77665554     6788999999999999999874 6778899999999877 999999999999999999988777666


Q ss_pred             HHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHh
Q 014951          234 YTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVT  313 (415)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~  313 (415)
                      ++.....                                     .        ...+++|.+++||+++++++.+.+.+ 
T Consensus       291 l~~~~~~-------------------------------------~--------~~~~~lr~i~~gG~~~~~~~~~~~~~-  324 (547)
T PRK06087        291 LNLLEKQ-------------------------------------P--------ADLSALRFFLCGGTTIPKKVARECQQ-  324 (547)
T ss_pred             HhccccC-------------------------------------C--------CCCCCeEEEEEcCCCCCHHHHHHHHH-
Confidence            5421100                                     0        00137999999999999999988876 


Q ss_pred             cCCceEEeeccCCCCceeeeecCCc-ccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchh
Q 014951          314 SGAPLTQGYGLTESCSGCFTSLADV-FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDL  392 (415)
Q Consensus       314 ~~~~~~~~yG~tE~~~~~~~~~~~~-~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~  392 (415)
                      +++++++.||+||++.......... ....+++|+|++++.++++| +++..  ++.|+.|||+++|+.++.||+++++.
T Consensus       325 ~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~--~~~g~~Gel~v~g~~~~~gy~~~~~~  401 (547)
T PRK06087        325 RGIKLLSVYGSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVD-EARKT--LPPGCEGEEASRGPNVFMGYLDEPEL  401 (547)
T ss_pred             cCCcEEEEecccccCCccccCCCcchhhcCCcCCccCCCceEEEEc-CCCCC--CcCCCcceEEEecccccccccCCHHH
Confidence            4999999999999987665443221 12236789999999999999 76654  45679999999999999999999999


Q ss_pred             hhhhh-cCCceecCceEEEcCCCC
Q 014951          393 TEEVI-VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       393 ~~~~~-~~g~~~TGDlg~~d~~G~  415 (415)
                      +...| .+|||+|||++++|++|+
T Consensus       402 ~~~~~~~~g~~~TGDl~~~~~~g~  425 (547)
T PRK06087        402 TARALDEEGWYYSGDLCRMDEAGY  425 (547)
T ss_pred             HHHHhCCCCCcCcCceEEECCCCC
Confidence            98888 689999999999999985

>PRK05852 acyl-CoA synthetase; Validated

Probab=100.00  E-value=9.4e-47  Score=369.52  Aligned_cols=354  Identities=22%  Similarity=0.297  Sum_probs=266.2

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |.+.|+++||+|+++++|+++++++++||+++|++++++++.++.+++.++++.++++++|++............   ..
T Consensus        60 L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~---~~  136 (534)
T PRK05852         60 LTRSGLLPGDRVALRMGSNAEFVVALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTT---RW  136 (534)
T ss_pred             HHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhccccc---cc
Confidence            456899999999999999999999999999999999999999999999999999999999998754322111110   01


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD  160 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~  160 (415)
                      ....+.+.......      .......+..... ............++.++++|||||||.||+|.++|+++...+....
T Consensus       137 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~  209 (534)
T PRK05852        137 WPLTVNVGGDSGPS------GGTLSVHLDAATE-PTPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAII  209 (534)
T ss_pred             cceeeeeccccccc------ccccccccccccC-CCccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHH
Confidence            11111111100000      0000000000000 0001111222357889999999999999999999999998888776


Q ss_pred             hhhhhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC---CHHHHHHHHHhhCCeEEEeCcHHHHHHHHH
Q 014951          161 QMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG---DVRYLMEDIQELKPTMFSGVPRVYDRIYTG  236 (415)
Q Consensus       161 ~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~  236 (415)
                      ..+     .++.+|+++++.|++|..++.. ++.+++.|+++++.+.   ++..+++.|+++++|.++++|++++.+.+.
T Consensus       210 ~~~-----~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~  284 (534)
T PRK05852        210 TGY-----RLSPRDATVAVMPLYHGHGLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLER  284 (534)
T ss_pred             HHh-----CCCCcceEEEecCcchhHHHHHHHHHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhh
Confidence            655     6789999999999999999875 6778899999888542   788999999999999999999999988653


Q ss_pred             HHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCC
Q 014951          237 ISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGA  316 (415)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~  316 (415)
                      .....                                          . ....+++|.+.++|+++++++.+++.+.++.
T Consensus       285 ~~~~~------------------------------------------~-~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~  321 (534)
T PRK05852        285 AATEP------------------------------------------S-GRKPAALRFIRSCSAPLTAETAQALQTEFAA  321 (534)
T ss_pred             ccccc------------------------------------------c-cccCCCeeEEEECCCCCCHHHHHHHHHHhCC
Confidence            21100                                          0 0001489999999999999999999999999


Q ss_pred             ceEEeeccCCCCceeeeecCCc----ccccCccccc--ccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCc
Q 014951          317 PLTQGYGLTESCSGCFTSLADV----FNMIGTVGVP--MTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRP  390 (415)
Q Consensus       317 ~~~~~yG~tE~~~~~~~~~~~~----~~~~~~~G~~--~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~  390 (415)
                      ++++.||+||++..++....+.    .....++|.+  .+|++++|+| +++..  ++.++.|||+++|+.+++||++++
T Consensus       322 ~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~g~~~~i~d-~~g~~--~~~g~~Gel~v~g~~v~~gY~~~~  398 (534)
T PRK05852        322 PVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGRSTGAQIRIVG-SDGLP--LPAGAVGEVWLRGTTVVRGYLGDP  398 (534)
T ss_pred             ChhhccCccccchhhhcCCccccccccCcccccccCCCCCCCeEEEEC-CCCCC--CCCCCceEEEEecCcccchhcCCc
Confidence            9999999999987655432211    1111233444  6999999999 77654  456799999999999999999999


Q ss_pred             hhhhhhhcCCceecCceEEEcCCCC
Q 014951          391 DLTEEVIVDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       391 ~~~~~~~~~g~~~TGDlg~~d~~G~  415 (415)
                      +.+.+.|.+|||+|||+|++|+||+
T Consensus       399 ~~t~~~~~~g~~~TGD~~~~d~dG~  423 (534)
T PRK05852        399 TITAANFTDGWLRTGDLGSLSAAGD  423 (534)
T ss_pred             ccchhhhcCCCcccCceEEEeCCCc
Confidence            9999999999999999999999985

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=100.00  E-value=2e-46  Score=367.22  Aligned_cols=349  Identities=20%  Similarity=0.248  Sum_probs=274.2

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |.+.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++..+++.++++++|++.+....+....... ..
T Consensus        63 L~~~gi~~g~~V~v~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~-~~  141 (542)
T PRK06155         63 LAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGD-LP  141 (542)
T ss_pred             HHHcCCCCCCEEEEECCCChHHHHHHHHHHHhCCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhcccc-cC
Confidence            45689999999999999999999999999999999999999999999999999999999999988776655433221 23


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD  160 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~  160 (415)
                      .+.++.++......      .... +...++.. ...........++++++++|||||||.||+|.++|.++........
T Consensus       142 ~~~~~~~~~~~~~~------~~~~-~~~~~~~~-~~~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~  213 (542)
T PRK06155        142 LPAVWLLDAPASVS------VPAG-WSTAPLPP-LDAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSA  213 (542)
T ss_pred             cceEEEecCccccc------cccc-cchhhhcc-cCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHH
Confidence            44555554322100      0000 00011111 1111122344678999999999999999999999999988776655


Q ss_pred             hhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHHH
Q 014951          161 QMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISN  239 (415)
Q Consensus       161 ~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~  239 (415)
                      ..+     .+.+.+++++.+|++|..++...+.+++.|+++++.+. ++..+++.|+++++|+++++|+++..+.+....
T Consensus       214 ~~~-----~~~~~~~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~  288 (542)
T PRK06155        214 EDL-----EIGADDVLYTTLPLFHTNALNAFFQALLAGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPAR  288 (542)
T ss_pred             Hhc-----CCCCCCEEEEecCHHHHHHHHHHHHHHHcCceEEeeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCc
Confidence            554     67889999999999999998878889999999998876 899999999999999999999998877541100


Q ss_pred             hhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCCceE
Q 014951          240 KISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLT  319 (415)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~~  319 (415)
                                                           ..        ....++|.++.||  +++.+.+.+++.++.+++
T Consensus       289 -------------------------------------~~--------~~~~~l~~~~~g~--~~~~~~~~~~~~~~~~v~  321 (542)
T PRK06155        289 -------------------------------------ES--------DRAHRVRVALGPG--VPAALHAAFRERFGVDLL  321 (542)
T ss_pred             -------------------------------------cc--------cccCceEEEEEcC--CCHHHHHHHHHHcCCCEE
Confidence                                                 00        0013788877666  568888888888999999


Q ss_pred             EeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecC---CccccccCCchhhhhh
Q 014951          320 QGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGN---TLFSGYYKRPDLTEEV  396 (415)
Q Consensus       320 ~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~---~~~~gY~~~~~~~~~~  396 (415)
                      +.||+||++..+.....  ....+++|.+.++++++|+| +++..  ++.|+.|||+++|+   .++.||+++++.+.+.
T Consensus       322 ~~YG~tE~~~~~~~~~~--~~~~~~vG~~~~~~~~~i~d-~~~~~--~~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~  396 (542)
T PRK06155        322 DGYGSTETNFVIAVTHG--SQRPGSMGRLAPGFEARVVD-EHDQE--LPDGEPGELLLRADEPFAFATGYFGMPEKTVEA  396 (542)
T ss_pred             eeecccccCccccCCCC--CCCCCCcCccCCCceEEEEC-CCCCC--CCCCCceEEEEecCCccccchhhcCCHHHHHHh
Confidence            99999999877654322  23458899999999999999 66654  45668999999998   6999999999999999


Q ss_pred             hcCCceecCceEEEcCCCC
Q 014951          397 IVDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       397 ~~~g~~~TGDlg~~d~~G~  415 (415)
                      |.++||+|||+|++|+||+
T Consensus       397 ~~~~~~~TGD~~~~~~dG~  415 (542)
T PRK06155        397 WRNLWFHTGDRVVRDADGW  415 (542)
T ss_pred             hcCCcEeccceEEEcCCce
Confidence            9999999999999999985

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=100.00  E-value=2.9e-47  Score=410.44  Aligned_cols=354  Identities=17%  Similarity=0.107  Sum_probs=268.8

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCCh---hhhhhcCccC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI---PSILSCLPRC   77 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---~~~~~~~~~~   77 (415)
                      |++.|+++||+|+|+++|+++++++++||+++|++++|++|.++.+++.++++.++++++|++.+..   ..+.......
T Consensus       287 L~~~gv~~g~~V~i~~~~~~~~i~~~lA~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~  366 (1389)
T TIGR03443       287 LLKTGIKRGDVVMIYAYRGVDLVVAVMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKE  366 (1389)
T ss_pred             HHHhCCCCCCEEEEEecCCHHHHHHHHHHHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcc
Confidence            4578999999999999999999999999999999999999999999999999999999999876421   1111111000


Q ss_pred             C---CCccEEEEecCCCchhhHHhhhcCceeecHHHHHhcC---CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHH
Q 014951           78 C---LYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLG---TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQA  151 (415)
Q Consensus        78 ~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~  151 (415)
                      .   .....+...+.... ..      ........+.....   ..........++++++|+|||||||.||||+++|++
T Consensus       367 ~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~  439 (1389)
T TIGR03443       367 LELRTEIPALALQDDGSL-VG------GSLEGGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFS  439 (1389)
T ss_pred             cccccccceEEecccccc-cc------cccccccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHH
Confidence            0   01111111110000 00      00000000000000   001111234678999999999999999999999999


Q ss_pred             HHHHhhhhhhhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC----CHHHHHHHHHhhCCeEEEeCc
Q 014951          152 IVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVP  227 (415)
Q Consensus       152 l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~----~~~~~~~~i~~~~~t~~~~~P  227 (415)
                      +.+.+.+....+     .+..+|+++...|++|..++..++.+++.|+++++.+.    ++..+++.|+++++|+++++|
T Consensus       440 l~~~~~~~~~~~-----~~~~~d~~~~~~~~~~d~~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~P  514 (1389)
T TIGR03443       440 LAYYFPWMAKRF-----GLSENDKFTMLSGIAHDPIQRDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTP  514 (1389)
T ss_pred             HHHHHHHHHHhc-----CCCCCCEEEEecCceecchHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCH
Confidence            999988776666     67889999999999999888888999999999998764    688999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHH
Q 014951          228 RVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVE  307 (415)
Q Consensus       228 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~  307 (415)
                      ++++.+.....                                           .     ...++|.+++||+++++...
T Consensus       515 s~~~~l~~~~~-------------------------------------------~-----~~~~lr~~~~gGe~l~~~~~  546 (1389)
T TIGR03443       515 AMGQLLSAQAT-------------------------------------------T-----PIPSLHHAFFVGDILTKRDC  546 (1389)
T ss_pred             HHHHHHHhccc-------------------------------------------c-----cCCCccEEEEecccCCHHHH
Confidence            99987643100                                           0     01379999999999999998


Q ss_pred             HHHHHhc-CCceEEeeccCCCCceeeeecCCcc----------cccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEE
Q 014951          308 EFLRVTS-GAPLTQGYGLTESCSGCFTSLADVF----------NMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEIC  376 (415)
Q Consensus       308 ~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~~~----------~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~  376 (415)
                      +.+.+.. +.++++.||+||++..++.......          ....++|+|+++++++|+| +++...+++.|+.|||+
T Consensus       547 ~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd-~~~~~~~~~~G~~GEL~  625 (1389)
T TIGR03443       547 LRLQTLAENVCIVNMYGTTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVVN-RNDRTQTCGVGEVGEIY  625 (1389)
T ss_pred             HHHHHhCCCCEEEECccCCccceeEEEEEccccccccchhhcccCcCcCCCccCCCEEEEEC-CccCCCcCCCCCceEEE
Confidence            8887654 6899999999999876654332111          1235789999999999999 66555677788999999


Q ss_pred             EecCCccccccCCchhhhhhhc-----------------------------CCceecCceEEEcCCCC
Q 014951          377 LRGNTLFSGYYKRPDLTEEVIV-----------------------------DGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       377 v~~~~~~~gY~~~~~~~~~~~~-----------------------------~g~~~TGDlg~~d~~G~  415 (415)
                      |+||++++||+++|+.|.++|.                             +|||+|||+|++|+||+
T Consensus       626 i~G~~v~~GY~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~dG~  693 (1389)
T TIGR03443       626 VRAGGLAEGYLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLPDGN  693 (1389)
T ss_pred             ecccccchhcCCChhHhhhhccCCcccCcccccccccccccccccccCCCccceeecCCceeEcCCCC
Confidence            9999999999999999998872                             57999999999999985

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=100.00  E-value=2.2e-46  Score=366.77  Aligned_cols=351  Identities=19%  Similarity=0.239  Sum_probs=272.2

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCCh----hhhhhcCcc
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI----PSILSCLPR   76 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~----~~~~~~~~~   76 (415)
                      |.+.|+++||+|+++++|+++++++++||+++|++++++.+.....++..+++.+++++++++.+..    .........
T Consensus        65 L~~~g~~~g~~V~v~~~n~~~~~~~~la~~~~G~v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~  144 (536)
T PRK10946         65 LRRQGIKPGDTALVQLGNVAEFYITFFALLKLGVAPVNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVA  144 (536)
T ss_pred             HHHcCCCCCCEEEEECCChHHHHHHHHHHHHcCeEEecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHh
Confidence            3567999999999999999999999999999999888777777888999999999999999986531    111111111


Q ss_pred             CCCCccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHh
Q 014951           77 CCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEV  156 (415)
Q Consensus        77 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~  156 (415)
                      ..+..+.++..+...             ...+.++..............++++++++|||||||.||+|++||.++...+
T Consensus       145 ~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~  211 (536)
T PRK10946        145 EHSSLRVVLLLNDDG-------------EHSLDDAINHPAEDFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSV  211 (536)
T ss_pred             hCCCceEEEEecCCC-------------CccHHHHhhCcccccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHH
Confidence            113333443332210             1223333332221222234567899999999999999999999999999988


Q ss_pred             hhhhhhhhhccccCCCCCEEEEeCChhhHHHHHH--HHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHHH
Q 014951          157 LSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII--ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRI  233 (415)
Q Consensus       157 ~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~--~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l  233 (415)
                      ......+     .+..+|++++.+|++|.+++..  .+.+++.|+++++.+. ++..+++.++++++|++.++|.++..+
T Consensus       212 ~~~~~~~-----~~~~~~~~l~~~p~~h~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l  286 (536)
T PRK10946        212 RRSVEIC-----GFTPQTRYLCALPAAHNYPMSSPGALGVFLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLW  286 (536)
T ss_pred             HHHHHhc-----CCCCCceEEEecCccccccchhhhHHHHhhcCcEEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHH
Confidence            8766555     6788999999999999888763  5678999999988765 899999999999999999999999988


Q ss_pred             HHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHh
Q 014951          234 YTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVT  313 (415)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~  313 (415)
                      ++.+......                                           ...+++|.+++||+++++++.+.+.+.
T Consensus       287 ~~~~~~~~~~-------------------------------------------~~~~~l~~v~~gg~~l~~~~~~~~~~~  323 (536)
T PRK10946        287 LQAIAEGGSR-------------------------------------------AQLASLKLLQVGGARLSETLARRIPAE  323 (536)
T ss_pred             HhhhcccCcc-------------------------------------------ccccceeEEEECCCCCCHHHHHHHHHh
Confidence            6532111000                                           000379999999999999999999988


Q ss_pred             cCCceEEeeccCCCCceeeeecCCcccccCcccccc-cCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchh
Q 014951          314 SGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPM-TTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDL  392 (415)
Q Consensus       314 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~-~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~  392 (415)
                      +++++++.||+||++..............+++|+|+ |++.++|+| +++.  +++.|+.|||+++|+.++.||+++++.
T Consensus       324 ~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~v~i~d-~~~~--~~~~g~~Gel~v~g~~~~~GY~~~~~~  400 (536)
T PRK10946        324 LGCQLQQVFGMAEGLVNYTRLDDSDERIFTTQGRPMSPDDEVWVAD-ADGN--PLPQGEVGRLMTRGPYTFRGYYKSPQH  400 (536)
T ss_pred             cCCeEEEeecccccceeeecCCCccccccccCCcccCCCceEEEEC-CCCC--CCCCCCccEEEEecCccchhhcCCccc
Confidence            999999999999965433222212223357899998 899999999 6664  455679999999999999999999999


Q ss_pred             hhhhh-cCCceecCceEEEcCCCC
Q 014951          393 TEEVI-VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       393 ~~~~~-~~g~~~TGDlg~~d~~G~  415 (415)
                      +.+.| .+|||+|||+|++|+||+
T Consensus       401 t~~~~~~d~~~~TGDl~~~d~~G~  424 (536)
T PRK10946        401 NASAFDANGFYCSGDLVSIDPDGY  424 (536)
T ss_pred             chhhcccCCceecCceEEECCCCc
Confidence            99988 689999999999999985

>PLN03051 acyl-activating enzyme; Provisional

Probab=100.00  E-value=1.1e-46  Score=365.42  Aligned_cols=343  Identities=17%  Similarity=0.126  Sum_probs=246.7

Q ss_pred             cCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCC------hhhhhhcCccCCCCccEEEEecC
Q 014951           16 GSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENK------IPSILSCLPRCCLYLKTIVSFAN   89 (415)
Q Consensus        16 ~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~------~~~~~~~~~~~~~~~~~v~~~~~   89 (415)
                      ++|++|+++++|||+++|++++|+++.++++++.++++.++++++|+++..      .+.+......  ...+.++....
T Consensus         1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~   78 (499)
T PLN03051          1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEA--APAKAIVLPAA   78 (499)
T ss_pred             CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhc--ccceEEEEecc
Confidence            589999999999999999999999999999999999999999999998653      1122111111  01122222211


Q ss_pred             CCchhhHHhhhcCceeecHHHHHhcCC-------CCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhhhh
Q 014951           90 VSSSQKKEAEELGVSCFSWEEFLQLGT-------LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQM  162 (415)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~  162 (415)
                      ......    ........++++.....       .........++|+++|+|||||||.||||++||.++..........
T Consensus        79 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~  154 (499)
T PLN03051         79 GEPVAV----PLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAH  154 (499)
T ss_pred             CcccCC----ccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHh
Confidence            100000    00001224555442110       0111112356899999999999999999999999988765443333


Q ss_pred             hhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC--CHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHHHh
Q 014951          163 FVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNK  240 (415)
Q Consensus       163 ~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~  240 (415)
                      +     .+..+|++++.+|++|.+++..++.+++.|+++++.+.  ++..+++.|+++++|++.++|+++..+++.... 
T Consensus       155 ~-----~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~-  228 (499)
T PLN03051        155 M-----DIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAF-  228 (499)
T ss_pred             c-----CCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCcc-
Confidence            3     56788999999999999887767788999999998863  789999999999999999999999887541000 


Q ss_pred             hhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhc--CCce
Q 014951          241 ISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS--GAPL  318 (415)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~--~~~~  318 (415)
                                                        .....++        ++||.+++||+++++++.+++++.+  +.++
T Consensus       229 ----------------------------------~~~~~~~--------~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~  266 (499)
T PLN03051        229 ----------------------------------AMEGLDW--------SKLRVFASTGEASAVDDVLWLSSVRGYYKPV  266 (499)
T ss_pred             ----------------------------------ccccCCc--------hhheEEEecCCCCCHHHHHHHHHhcccccee
Confidence                                              0000111        3799999999999999988887643  4789


Q ss_pred             EEeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCc--cccccCCchhhhhh
Q 014951          319 TQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTL--FSGYYKRPDLTEEV  396 (415)
Q Consensus       319 ~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~--~~gY~~~~~~~~~~  396 (415)
                      ++.||+||++..+...........+++|+|.+|++++|+| ++++.++.+.++.|||+++||.+  +.|||+++ .+ +.
T Consensus       267 ~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ivd-~~g~~~~~g~~~~Gel~v~g~~~~~~~gy~~~~-~~-~~  343 (499)
T PLN03051        267 IEYCGGTELASGYISSTLLQPQAPGAFSTASLGTRFVLLN-DNGVPYPDDQPCVGEVALAPPMLGASDRLLNAD-HD-KV  343 (499)
T ss_pred             EeeeccccccceeecccccCCCCCccccCCCCCceEEEEC-CCCCCCCCCCCcceEEEEecCcCCCCccccCCc-cc-ce
Confidence            9999999987544332222222347899999999999999 77776655444689999999976  58999765 33 33


Q ss_pred             hcCC----------ceecCceEEEcCCCC
Q 014951          397 IVDG----------WFHTGDIGEWQPMEL  415 (415)
Q Consensus       397 ~~~g----------~~~TGDlg~~d~~G~  415 (415)
                      +.+|          ||+|||+|++|+||+
T Consensus       344 ~~~g~~~~~~~~~~~~~TGDlg~~d~dG~  372 (499)
T PLN03051        344 YYKGMPMYGSKGMPLRRHGDIMKRTPGGY  372 (499)
T ss_pred             eeecCCccccCCcceeecCCeEEECCCCc
Confidence            4344          689999999999996

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=100.00  E-value=6e-47  Score=381.89  Aligned_cols=341  Identities=20%  Similarity=0.310  Sum_probs=256.9

Q ss_pred             CCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhh-cCccCCCCccEE
Q 014951            6 VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILS-CLPRCCLYLKTI   84 (415)
Q Consensus         6 v~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~-~~~~~~~~~~~v   84 (415)
                      +++||+|+++++|++|+++++|||+++|++++|+++.++.+++.+++++++++++|++.+..+.... .......... +
T Consensus       252 ~~~gd~Val~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~-~  330 (718)
T PRK08043        252 SVEGERIGLMLPNATISAAVIFGASLRRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVR-W  330 (718)
T ss_pred             cCCCceEEEEcCCcHHHHHHHHHHHHcCCcccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhcccc-E
Confidence            5899999999999999999999999999999999999999999999999999999998765432110 0010011111 2


Q ss_pred             EEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhhhhhh
Q 014951           85 VSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV  164 (415)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~  164 (415)
                      +.++.......     .........+...   ......+..++|+++++|||||||.||||++||.++..........+ 
T Consensus       331 i~~~~~~~~~~-----~~~~~~~~~~~~~---~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~-  401 (718)
T PRK08043        331 VYLEDLKDDVT-----TADKLWIFAHLLM---PRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIA-  401 (718)
T ss_pred             EEhhhhhhhcc-----hhHHHHHHHHHhC---CccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhh-
Confidence            22221100000     0000000000000   01111234678999999999999999999999999998877665544 


Q ss_pred             hccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC--CHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHHHhh
Q 014951          165 VTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKI  241 (415)
Q Consensus       165 ~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~  241 (415)
                          .+..+|++++.+|++|.+++.. ++.++..|+++++.+.  ++..+++.++++++|+++++|+++..+.+..    
T Consensus       402 ----~~~~~d~~l~~~Pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~----  473 (718)
T PRK08043        402 ----DFTPNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA----  473 (718)
T ss_pred             ----CCCccCeEEEcCcchhhhhhHHHHHHHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc----
Confidence                6788999999999999999875 6788999999998864  6778899999999999999999887653310    


Q ss_pred             hcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCCceEEe
Q 014951          242 SSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQG  321 (415)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~~~~  321 (415)
                                                         ...++        ++||.+++||+++++++.+.+++.+++++++.
T Consensus       474 -----------------------------------~~~~~--------~~lr~i~~gg~~l~~~~~~~~~~~~g~~l~~~  510 (718)
T PRK08043        474 -----------------------------------NPYDF--------ARLRYVVAGAEKLQESTKQLWQDKFGLRILEG  510 (718)
T ss_pred             -----------------------------------Ccccc--------cceEEEEEeCccCCHHHHHHHHHHcCCCeecc
Confidence                                               00011        38999999999999999999999899999999


Q ss_pred             eccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccC--Cchh-------
Q 014951          322 YGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYK--RPDL-------  392 (415)
Q Consensus       322 yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~--~~~~-------  392 (415)
                      ||+||++..++...+.. ...+++|+|+||++++|++ +++.      ++.|||+++|++++.|||+  +++.       
T Consensus       511 YG~TE~~~~~~~~~~~~-~~~~svG~p~pg~~~~i~d-~~~~------~~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~  582 (718)
T PRK08043        511 YGVTECAPVVSINVPMA-AKPGTVGRILPGMDARLLS-VPGI------EQGGRLQLKGPNIMNGYLRVEKPGVLEVPTAE  582 (718)
T ss_pred             cCcccccceEEecCCcc-cCCCCCCCcCCCCeeEEec-CCCC------CCceEEEEecCCccccccCCCCcccccccccc
Confidence            99999987765543322 3458999999999999998 4432      3569999999999999998  4442       


Q ss_pred             hhhh-hcCCceecCceEEEcCCCC
Q 014951          393 TEEV-IVDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       393 ~~~~-~~~g~~~TGDlg~~d~~G~  415 (415)
                      +.+. +.+|||+|||+|++|+||+
T Consensus       583 ~~~~~~~~gw~~TGDlg~~d~dG~  606 (718)
T PRK08043        583 NARGEMERGWYDTGDIVRFDEQGF  606 (718)
T ss_pred             cccccccCCeEecCCEEEEcCCCc
Confidence            2222 2579999999999999996

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=100.00  E-value=9.5e-47  Score=401.14  Aligned_cols=351  Identities=23%  Similarity=0.330  Sum_probs=275.3

Q ss_pred             CCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCc-cCCCCccE
Q 014951            5 GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLP-RCCLYLKT   83 (415)
Q Consensus         5 Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~-~~~~~~~~   83 (415)
                      ++++||+|+++++|+++++++++||+++|++++|+++..+.+++.++++++++++++++++..+.+..... ........
T Consensus       661 ~~~~g~~V~i~~~n~~~~~~~~la~~~~G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~  740 (1146)
T PRK08633        661 ELKDEENVGILLPPSVAGALANLALLLAGKVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVK  740 (1146)
T ss_pred             hCCCCCeEEEECCCchHHHHHHHHHHHcCCEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCce
Confidence            57999999999999999999999999999999999999999999999999999999999876655432110 01122234


Q ss_pred             EEEecCCCchhhHHhhhcCceeecHHHHHhcCCCC------CCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhh
Q 014951           84 IVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLD------CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVL  157 (415)
Q Consensus        84 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~  157 (415)
                      ++..++......        ....+.+.......+      .......++|+++++|||||||.||+|.+||+++.....
T Consensus       741 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~  812 (1146)
T PRK08633        741 VIYLEDLKAKIS--------KVDKLTALLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIE  812 (1146)
T ss_pred             EEEeehhccccc--------hhHHHHHHHHhccCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHH
Confidence            444433211000        001111111110000      001345679999999999999999999999999999887


Q ss_pred             hhhhhhhhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC--CHHHHHHHHHhhCCeEEEeCcHHHHHHH
Q 014951          158 SVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIY  234 (415)
Q Consensus       158 ~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~  234 (415)
                      .....+     ...++|++++.+|++|.+++.. .+.++..|+++++.+.  ++..+++.++++++|++.++|++++.+.
T Consensus       813 ~~~~~~-----~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~  887 (1146)
T PRK08633        813 QISDVF-----NLRNDDVILSSLPFFHSFGLTVTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYL  887 (1146)
T ss_pred             HHHHhc-----CCCCCCEEEEcCcHHHHHhHHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHH
Confidence            766655     6778999999999999999876 7788999999988764  8999999999999999999999998875


Q ss_pred             HHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhc
Q 014951          235 TGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS  314 (415)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~  314 (415)
                      +...                                     .+..++        +++|.+++||+++++++.+++++.+
T Consensus       888 ~~~~-------------------------------------~~~~~~--------~~lr~~~~gg~~~~~~~~~~~~~~~  922 (1146)
T PRK08633        888 RNKK-------------------------------------LHPLMF--------ASLRLVVAGAEKLKPEVADAFEEKF  922 (1146)
T ss_pred             hccc-------------------------------------cCcccC--------CCeeeEEEcCCcCCHHHHHHHHHHh
Confidence            4110                                     111111        3899999999999999999999999


Q ss_pred             CCceEEeeccCCCCceeeeecCCc---------ccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCcccc
Q 014951          315 GAPLTQGYGLTESCSGCFTSLADV---------FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSG  385 (415)
Q Consensus       315 ~~~~~~~yG~tE~~~~~~~~~~~~---------~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~g  385 (415)
                      +.++++.||+||++.++....++.         ..+.+++|+|+||++++|+| ++++ .+++.|+.|||+++|+.++.|
T Consensus       923 g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~-~~~~~g~~Gel~v~g~~~~~g 1000 (1146)
T PRK08633        923 GIRILEGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVD-PETF-EELPPGEDGLILIGGPQVMKG 1000 (1146)
T ss_pred             CCCeecccccccCcceEEEecCcccccccccccCCCCCCccccCCCCEEEEEc-CCCC-ccCCCCCceEEEEcCCCcccc
Confidence            999999999999987766543321         12357899999999999999 4433 445677999999999999999


Q ss_pred             ccCCchhhhhhhcC----CceecCceEEEcCCCC
Q 014951          386 YYKRPDLTEEVIVD----GWFHTGDIGEWQPMEL  415 (415)
Q Consensus       386 Y~~~~~~~~~~~~~----g~~~TGDlg~~d~~G~  415 (415)
                      |+++|+.+.+.|.+    |||+|||+|++|+||+
T Consensus      1001 Y~~~~~~t~~~~~~~~~~~~~~TGD~~~~~~~g~ 1034 (1146)
T PRK08633       1001 YLGDPEKTAEVIKDIDGIGWYVTGDKGHLDEDGF 1034 (1146)
T ss_pred             ccCCccchHHHhhcCCCCCeEECCCEEEEcCCce
Confidence            99999999998876    9999999999999985

>PLN03102 acyl-activating enzyme; Provisional

Probab=100.00  E-value=1.3e-46  Score=370.83  Aligned_cols=357  Identities=21%  Similarity=0.272  Sum_probs=258.9

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCC--
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCC--   78 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~--   78 (415)
                      |.++|+++||+|+|+++|++++++++|||+++|++++||++.++.+++.++++.++++++|++++..+.+.......-  
T Consensus        56 L~~~Gl~~gd~Vai~~~n~~e~~~~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~  135 (579)
T PLN03102         56 LISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSE  135 (579)
T ss_pred             HHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEeeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhcccc
Confidence            356799999999999999999999999999999999999999999999999999999999999877665544322110  


Q ss_pred             --CCccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCC-----CCCCCCCCCeEEEEecCCCCCCCceEEeecHH
Q 014951           79 --LYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDC-----ELPPKKKTNISTIMYTSGTTGEPKGVVLTNQA  151 (415)
Q Consensus        79 --~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~  151 (415)
                        .....++.++.......     ......+++++........     ......++++++|+|||||||.||+|+++|.+
T Consensus       136 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~  210 (579)
T PLN03102        136 DSNLNLPVIFIHEIDFPKR-----PSSEELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRG  210 (579)
T ss_pred             ccccCceEEEecccccccC-----CcccccCHHHHHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHH
Confidence              01123444432211000     0011234455443321110     01224568999999999999999999999999


Q ss_pred             HHHHhhhhhhhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHH
Q 014951          152 IVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVY  230 (415)
Q Consensus       152 l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~  230 (415)
                      +..........     ..+...++++..+|++|..++...+.++..|+++++.+. ++..+++.|+++++|++.++|+++
T Consensus       211 ~~~~~~~~~~~-----~~~~~~~~~l~~~pl~h~~g~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~  285 (579)
T PLN03102        211 AYLSTLSAIIG-----WEMGTCPVYLWTLPMFHCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVF  285 (579)
T ss_pred             HHHHHHHHHhh-----cCCCCCCeEEecCChhhhcchhHHHHHHHhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHH
Confidence            75544332111     245567889999999999988777778888888887765 889999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHH
Q 014951          231 DRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFL  310 (415)
Q Consensus       231 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~  310 (415)
                      ..+.+.....                                     ....        .+++.+++||+++++.+.+++
T Consensus       286 ~~l~~~~~~~-------------------------------------~~~~--------~~~~~~~~gg~~~~~~~~~~~  320 (579)
T PLN03102        286 NILLKGNSLD-------------------------------------LSPR--------SGPVHVLTGGSPPPAALVKKV  320 (579)
T ss_pred             HHHHhCcccc-------------------------------------cCCc--------ccceEEEECCCCCCHHHHHHH
Confidence            9886521100                                     0000        256788999999999999998


Q ss_pred             HHhcCCceEEeeccCCCCceeeeecCC-------c------ccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEE
Q 014951          311 RVTSGAPLTQGYGLTESCSGCFTSLAD-------V------FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICL  377 (415)
Q Consensus       311 ~~~~~~~~~~~yG~tE~~~~~~~~~~~-------~------~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v  377 (415)
                      ++ ++.++++.||+||+++.+......       .      ....+..+.+.++++  +.+.+.+..++.+.++.|||++
T Consensus       321 ~~-~g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~--i~~~~~~~~v~~~~~~~GEl~v  397 (579)
T PLN03102        321 QR-LGFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLADVD--VKNKETQESVPRDGKTMGEIVI  397 (579)
T ss_pred             HH-cCCeEEeecCccccCccccccccccccccCCcccccccccCCCcccccccceE--EeccccccccCCCCCCceEEEE
Confidence            75 699999999999998654322110       0      011233444555444  4442333334443347899999


Q ss_pred             ecCCccccccCCchhhhhhhcCCceecCceEEEcCCCC
Q 014951          378 RGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       378 ~~~~~~~gY~~~~~~~~~~~~~g~~~TGDlg~~d~~G~  415 (415)
                      +|+.++.|||++++.+.+.|.+|||+|||+|++|+||+
T Consensus       398 ~g~~~~~GY~~~~~~t~~~f~~gw~~TGDlg~~d~dG~  435 (579)
T PLN03102        398 KGSSIMKGYLKNPKATSEAFKHGWLNTGDVGVIHPDGH  435 (579)
T ss_pred             ECcchhhhhcCChhhhHhhhccCceecCceEEEcCCCe
Confidence            99999999999999999999999999999999999985

>PRK07470 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.1e-46  Score=368.74  Aligned_cols=350  Identities=21%  Similarity=0.292  Sum_probs=271.6

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |++.|+++||+|+++++|+++++++++||+++|++++++++.++.+++.++++.++++.++++.+........... ...
T Consensus        49 L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~  127 (528)
T PRK07470         49 LAARGVRKGDRILVHSRNCNQMFESMFAAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRAA-SPD  127 (528)
T ss_pred             HHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhCCeEEEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHHhh-CCc
Confidence            4568999999999999999999999999999999999999999999999999999999999998765544332211 123


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcC-CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSV  159 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~  159 (415)
                      ...++.++....            ...++++.... ..........++++++|+|||||||.||+|+++|.++...+...
T Consensus       128 ~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~  195 (528)
T PRK07470        128 LTHVVAIGGARA------------GLDYEALVARHLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNH  195 (528)
T ss_pred             CceEEEeCCCcc------------cccHHHHHhcCCCCCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHH
Confidence            334444433210            23444444332 11122334567899999999999999999999999987655432


Q ss_pred             hhhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC---CHHHHHHHHHhhCCeEEEeCcHHHHHHHHH
Q 014951          160 DQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG---DVRYLMEDIQELKPTMFSGVPRVYDRIYTG  236 (415)
Q Consensus       160 ~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~  236 (415)
                      ...+   .......|+++.++|++|.+++..++ .++.|+++++.+.   ++..+++.|+++++|++.++|++++.+.+.
T Consensus       196 ~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~  271 (528)
T PRK07470        196 LADL---MPGTTEQDASLVVAPLSHGAGIHQLC-QVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEH  271 (528)
T ss_pred             HHHh---ccCCCcccEEEEeccchhHHHHHHHH-HHhcCceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhC
Confidence            2211   01346789999999999999886544 4667777666542   899999999999999999999999887541


Q ss_pred             HHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCC
Q 014951          237 ISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGA  316 (415)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~  316 (415)
                      ..                                     ....+        .+++|.+++||++++++..+++.+.++.
T Consensus       272 ~~-------------------------------------~~~~~--------~~~lr~~~~gG~~l~~~~~~~~~~~~g~  306 (528)
T PRK07470        272 PA-------------------------------------VDRYD--------HSSLRYVIYAGAPMYRADQKRALAKLGK  306 (528)
T ss_pred             cC-------------------------------------cCCCC--------CcceEEEEEcCCCCCHHHHHHHHHHhCc
Confidence            10                                     00001        1489999999999999999999888899


Q ss_pred             ceEEeeccCCCCceeeeecCC-------cccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCC
Q 014951          317 PLTQGYGLTESCSGCFTSLAD-------VFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKR  389 (415)
Q Consensus       317 ~~~~~yG~tE~~~~~~~~~~~-------~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~  389 (415)
                      .+++.||+||+++.+......       .....+++|+|+++++++++| +++..  ++.|+.|||+++|+.++.||+++
T Consensus       307 ~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d-~~~~~--~~~g~~Gel~i~~~~~~~gy~~~  383 (528)
T PRK07470        307 VLVQYFGLGEVTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQD-DEGRE--LPPGETGEICVIGPAVFAGYYNN  383 (528)
T ss_pred             HHHHhCCCcccCCceeecchhhccccccccceeeccCcccCCcEEEEEC-CCCCC--CCCCCceEEEEeCCccchhhcCC
Confidence            999999999998766543221       112347899999999999999 77654  45679999999999999999999


Q ss_pred             chhhhhhhcCCceecCceEEEcCCCC
Q 014951          390 PDLTEEVIVDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       390 ~~~~~~~~~~g~~~TGDlg~~d~~G~  415 (415)
                      ++.+.+.|.+|||+|||+|++|+||+
T Consensus       384 ~~~~~~~~~~~~~~TGDl~~~~~~g~  409 (528)
T PRK07470        384 PEANAKAFRDGWFRTGDLGHLDARGF  409 (528)
T ss_pred             HHHHHhhhcCCcEecceeEEEccCCe
Confidence            99999889999999999999999985

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=100.00  E-value=2.8e-46  Score=365.19  Aligned_cols=354  Identities=23%  Similarity=0.326  Sum_probs=281.7

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |++.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++..+++.++++++|++.+....+....... ..
T Consensus        42 l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~  120 (515)
T TIGR03098        42 LRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGC-HD  120 (515)
T ss_pred             HHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCEEEEeCCCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhcc-cc
Confidence            35679999999999999999999999999999999999999999999999999999999999987665554433222 34


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD  160 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~  160 (415)
                      ...++.++.......     .......|+++...... ....+...+++++++|||||||.||+|.+||.++...+....
T Consensus       121 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~  194 (515)
T TIGR03098       121 LRTLILVGEPAHASE-----GGGESPSWPKLLALGDA-DPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVA  194 (515)
T ss_pred             cceEEEecCcccccC-----CccccccHHHhhccccc-cccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHH
Confidence            445555543321100     11223455555443221 122334568899999999999999999999999998887766


Q ss_pred             hhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHHH
Q 014951          161 QMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISN  239 (415)
Q Consensus       161 ~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~  239 (415)
                      ..+     .+..+|++++.+|++|.+++..++.++..|+++++.+. ++..+++.++++++|++.++|+++..+.+... 
T Consensus       195 ~~~-----~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-  268 (515)
T TIGR03098       195 TYL-----ENRPDDRLLAVLPLSFDYGFNQLTTAFYVGATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDW-  268 (515)
T ss_pred             HHh-----CCCcccEEEEECchhhHhHHHHHHHHHHcCCEEEEcCCCCHHHHHHHHHHcCCceEecChHHHHHHHhccc-
Confidence            554     67789999999999999999888899999999998876 99999999999999999999999988754100 


Q ss_pred             hhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhc-CCce
Q 014951          240 KISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPL  318 (415)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~-~~~~  318 (415)
                                                           ..        ....++|.++++|+++++++.+.+++.+ +..+
T Consensus       269 -------------------------------------~~--------~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~  303 (515)
T TIGR03098       269 -------------------------------------PE--------SAAPSLRYLTNSGGAMPRATLSRLRSFLPNARL  303 (515)
T ss_pred             -------------------------------------CC--------CCccceEEEEecCCcCCHHHHHHHHHHCCCCeE
Confidence                                                 00        0013899999999999999999999888 6789


Q ss_pred             EEeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhhhhhhc
Q 014951          319 TQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV  398 (415)
Q Consensus       319 ~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~~~~~  398 (415)
                      ++.||+||++..............+++|+|+++++++|++ +++..  ++.++.|||+++|+.++.|||++++.+...|.
T Consensus       304 ~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~~-~~~~~--~~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~  380 (515)
T TIGR03098       304 FLMYGLTEAFRSTYLPPEEVDRRPDSIGKAIPNAEVLVLR-EDGSE--CAPGEEGELVHRGALVAMGYWNDPEKTAERFR  380 (515)
T ss_pred             eeeeccccccceEecccccccCCCCCcceecCCCEEEEEC-CCCCC--CCCCCceEEEEcCchhhccccCCchhhhhhhh
Confidence            9999999987655443333234458999999999999999 66653  45679999999999999999999988876652


Q ss_pred             ------------CCceecCceEEEcCCCC
Q 014951          399 ------------DGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       399 ------------~g~~~TGDlg~~d~~G~  415 (415)
                                  ++||+|||+|++|+||+
T Consensus       381 ~~~~~~~~~~~~~~~~~TGD~~~~~~~g~  409 (515)
T TIGR03098       381 PLPPRPGELHLPELAVWSGDTVRRDEEGF  409 (515)
T ss_pred             ccCCccccccccccceeccceEEEcCCce
Confidence                        34899999999999985

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PLN03052 acetate--CoA ligase; Provisional

Probab=100.00  E-value=2.1e-46  Score=375.13  Aligned_cols=357  Identities=16%  Similarity=0.148  Sum_probs=259.9

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChh------hhhhcC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP------SILSCL   74 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~------~~~~~~   74 (415)
                      |++.|+++||+|+++++|++|+++++|||+++|++++|++|.++++++.+++++++++++|+++....      ......
T Consensus       225 L~~~Gv~~GdrVai~~pn~~e~via~LA~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~  304 (728)
T PLN03052        225 LDALGFEKGDAIAIDMPMNVHAVIIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVV  304 (728)
T ss_pred             HHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999875421      111111


Q ss_pred             ccCCCCccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCC---C--CCCCCCCCCCeEEEEecCCCCCCCceEEeec
Q 014951           75 PRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTL---D--CELPPKKKTNISTIMYTSGTTGEPKGVVLTN  149 (415)
Q Consensus        75 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th  149 (415)
                      ... .  ..++.+.........   ........|++++.....   .  ........+++++|+|||||||.||||+++|
T Consensus       305 ~~~-~--~~~iv~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh  378 (728)
T PLN03052        305 EAK-A--PKAIVLPADGKSVRV---KLREGDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQ  378 (728)
T ss_pred             Hhc-C--CcEEEEeCCCCcccc---ccccCCccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECc
Confidence            000 1  123333221100000   000112456666543210   1  1111235689999999999999999999999


Q ss_pred             HHHHHHhhhhhhhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC--CHHHHHHHHHhhCCeEEEeCc
Q 014951          150 QAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVP  227 (415)
Q Consensus       150 ~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~--~~~~~~~~i~~~~~t~~~~~P  227 (415)
                      .+++.........+     .+.++|++++.+|++|.++...++.++..|+++++.++  ++..+++.++++++|++.++|
T Consensus       379 ~~~l~~~~~~~~~~-----~l~~~d~~~~~~~l~w~~g~~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~P  453 (728)
T PLN03052        379 LTPLRAAADAWAHL-----DIRKGDIVCWPTNLGWMMGPWLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVP  453 (728)
T ss_pred             hHHHHHHHHHHHhc-----CCCCCcEEEECCCcHHHhHHHHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECH
Confidence            99876655433323     67789999999999999998777889999999999875  567899999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHH
Q 014951          228 RVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVE  307 (415)
Q Consensus       228 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~  307 (415)
                      ++++.+.+.                                     ......++        ++||.++++||+++++..
T Consensus       454 t~l~~l~~~-------------------------------------~~~~~~dl--------ssLr~i~s~Ge~l~~~~~  488 (728)
T PLN03052        454 SIVKTWKNT-------------------------------------NCMAGLDW--------SSIRCFGSTGEASSVDDY  488 (728)
T ss_pred             HHHHHHHhc-------------------------------------CCcccCCh--------hheeEEEecCCCCCHHHH
Confidence            999887541                                     00011122        389999999999999998


Q ss_pred             HHHHHhcC-CceEEeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecC--Cccc
Q 014951          308 EFLRVTSG-APLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGN--TLFS  384 (415)
Q Consensus       308 ~~~~~~~~-~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~--~~~~  384 (415)
                      .++.+.++ .++.+.||+||+++.+....+......+++|.|.+|++++|+| +++++++.+..+.|||+++++  ....
T Consensus       489 ~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~v~v~d-~~g~~v~~g~~~~GEL~v~~~~~~~~~  567 (728)
T PLN03052        489 LWLMSRAGYKPIIEYCGGTELGGGFVTGSLLQPQAFAAFSTPAMGCKLFILD-DSGNPYPDDAPCTGELALFPLMFGASS  567 (728)
T ss_pred             HHHHHhcCCCCeEeeccChhhCcccccCCCCCCCCCCccccCCCCceEEEEC-CCCCCCCCCCCceEEEEEeCCCCCCCc
Confidence            88887766 5799999999997654433222223358899999999999999 888766543224699999865  3345


Q ss_pred             cccCCchhhhhhhc-----CC--ceecCceEEEcCCCC
Q 014951          385 GYYKRPDLTEEVIV-----DG--WFHTGDIGEWQPMEL  415 (415)
Q Consensus       385 gY~~~~~~~~~~~~-----~g--~~~TGDlg~~d~~G~  415 (415)
                      +|++++. ...-|.     .|  ||+|||++++|+||+
T Consensus       568 ~~~~~~~-~~~yf~~~p~~~g~~~~~tGDl~~~d~dG~  604 (728)
T PLN03052        568 TLLNADH-YKVYFKGMPVFNGKILRRHGDIFERTSGGY  604 (728)
T ss_pred             cccCchh-hhhhhhcCCCCCCCEEEecCceEEECCCCe
Confidence            6776542 222221     13  999999999999996

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=100.00  E-value=3.7e-46  Score=363.37  Aligned_cols=348  Identities=21%  Similarity=0.266  Sum_probs=277.7

Q ss_pred             ccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCc
Q 014951            2 RSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYL   81 (415)
Q Consensus         2 ~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~   81 (415)
                      .+.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++.++++++|++.+..+.+.+..... +..
T Consensus        48 ~~~g~~~g~~v~l~~~~~~~~~~~~~a~~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~  126 (508)
T TIGR02262        48 RRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKS-PHL  126 (508)
T ss_pred             HHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEeeccCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHhcC-CCc
Confidence            4679999999999999999999999999999999999999999999999999999999999987766554433222 334


Q ss_pred             cEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhh-hh
Q 014951           82 KTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS-VD  160 (415)
Q Consensus        82 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~-~~  160 (415)
                      +.++..+....           ....+.+...............++++++++|||||||.||+|+++|+++...+.. ..
T Consensus       127 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~  195 (508)
T TIGR02262       127 EHRVVVGRPEA-----------GEVQLAELLATESEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYAR  195 (508)
T ss_pred             cEEEEeCCCCc-----------ccccHHHHhhcCCCccCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhH
Confidence            45555433210           1123444433222222223455789999999999999999999999999887755 22


Q ss_pred             hhhhhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC--CHHHHHHHHHhhCCeEEEeCcHHHHHHHHHH
Q 014951          161 QMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGI  237 (415)
Q Consensus       161 ~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~  237 (415)
                      ..+     .++.+|+++..+|++|.+++.. ++.++..|+++++.+.  ++..+++.|++++||.+.++|.++..+++..
T Consensus       196 ~~~-----~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~  270 (508)
T TIGR02262       196 NTL-----GIREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADP  270 (508)
T ss_pred             Hhc-----CCCCCCEEEEcCchHHHHHHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCc
Confidence            233     6788999999999999999865 6677889999988764  7999999999999999999999887764310


Q ss_pred             HHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCCc
Q 014951          238 SNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP  317 (415)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~  317 (415)
                      .                                     ..        .....++|.+++||+++++++.+.|.+.++.+
T Consensus       271 ~-------------------------------------~~--------~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~  305 (508)
T TIGR02262       271 N-------------------------------------LP--------AEDQVRLRLCTSAGEALPAEVGQRWQARFGVD  305 (508)
T ss_pred             c-------------------------------------cc--------ccccccceeEEEcCCCCCHHHHHHHHHHhCCc
Confidence            0                                     00        00014799999999999999999999999999


Q ss_pred             eEEeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhhhhhh
Q 014951          318 LTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI  397 (415)
Q Consensus       318 ~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~~~~  397 (415)
                      +++.||+||++.++.....+.. ..+++|+|++|++++|+| +++.  +++.|+.|||+++|+.++.||+++++.+...|
T Consensus       306 v~~~YG~tE~~~~~~~~~~~~~-~~~~~G~~~~g~~v~i~d-~~~~--~~~~g~~Gel~i~~~~~~~gY~~~~~~~~~~~  381 (508)
T TIGR02262       306 IVDGIGSTEMLHIFLSNLPGDV-RYGTSGKPVPGYRLRLVG-DGGQ--DVAAGEPGELLISGPSSATMYWNNRAKTRDTF  381 (508)
T ss_pred             hhhCccccccCceeecCCccCC-CCCCcCCCCCCcEEEEEC-CCCC--CCCCCCeeEEEEecCccccccCCCHHHhHhhh
Confidence            9999999999876554433322 237899999999999999 7664  44566999999999999999999999999999


Q ss_pred             cCCceecCceEEEcCCCC
Q 014951          398 VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       398 ~~g~~~TGDlg~~d~~G~  415 (415)
                      .++||+|||+++++++|+
T Consensus       382 ~~~~~~TGD~~~~~~~g~  399 (508)
T TIGR02262       382 QGEWTRSGDKYVRNDDGS  399 (508)
T ss_pred             hcCceeccceEEEcCCcc
Confidence            999999999999999874

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=100.00  E-value=3.5e-46  Score=364.43  Aligned_cols=353  Identities=22%  Similarity=0.328  Sum_probs=273.9

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |.+.|+++||+|+++++|+++++++++||+++|++++++++..+.+++.+++++++++.+|++.+..+.+.+........
T Consensus        54 L~~~g~~~~~~v~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~  133 (517)
T PRK08008         54 FYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATP  133 (517)
T ss_pred             HHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhcccc
Confidence            34679999999999999999999999999999999999999999999999999999999999998776655443332234


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCC-CCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSV  159 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~  159 (415)
                      .+.++..+.....        ......+++...... ......+..++++++++|||||||.||+|++||.++.......
T Consensus       134 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~  205 (517)
T PRK08008        134 LRHICLTRVALPA--------DDGVSSFTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYS  205 (517)
T ss_pred             CcEEEEecCCCcc--------cccccCHHHHhccCCccccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHH
Confidence            4555554432110        012334554443221 1112234467899999999999999999999999998654322


Q ss_pred             hhhhhhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHHHHHHH
Q 014951          160 DQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGI  237 (415)
Q Consensus       160 ~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~  237 (415)
                      ...     ..+..++++++.+|++|..+... ++.++..|+++++.+. ++..+++.++++++|++.++|++++.+....
T Consensus       206 ~~~-----~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~  280 (517)
T PRK08008        206 AWQ-----CALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQP  280 (517)
T ss_pred             hhh-----cCCCCCCeEEEecCcHHHHHHHHHHHHHHhcCcEEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCC
Confidence            111     14678899999999999877664 6778999999999876 8999999999999999999999998765310


Q ss_pred             HHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCCc
Q 014951          238 SNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP  317 (415)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~  317 (415)
                      .                                  .....           ..+++.+.++ .+++++....+.+.++.+
T Consensus       281 ~----------------------------------~~~~~-----------~~~l~~~~~~-~~~~~~~~~~~~~~~~~~  314 (517)
T PRK08008        281 P----------------------------------SANDR-----------QHCLREVMFY-LNLSDQEKDAFEERFGVR  314 (517)
T ss_pred             C----------------------------------ccccc-----------cccceeeEEe-cCCCHHHHHHHHHHhCCe
Confidence            0                                  00000           0256766665 478888888888889999


Q ss_pred             eEEeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEec---CCccccccCCchhhh
Q 014951          318 LTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRG---NTLFSGYYKRPDLTE  394 (415)
Q Consensus       318 ~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~---~~~~~gY~~~~~~~~  394 (415)
                      +++.||+||++..+...........+++|.|+++++++|+| +++.  +++.|+.|||+++|   ++++.|||++++.+.
T Consensus       315 ~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d-~~~~--~~~~g~~Gel~v~g~~~~~~~~gy~~~~~~~~  391 (517)
T PRK08008        315 LLTSYGMTETIVGIIGDRPGDKRRWPSIGRPGFCYEAEIRD-DHNR--PLPAGEIGEICIKGVPGKTIFKEYYLDPKATA  391 (517)
T ss_pred             EEeeccccccccccccCCccccccCCccccCCCCcEEEEEC-CCCC--CCCCCCcceEEEeCCCCcchhhhHhCChHHHh
Confidence            99999999998765544433333457899999999999999 6664  44567999999997   689999999999999


Q ss_pred             hhh-cCCceecCceEEEcCCCC
Q 014951          395 EVI-VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       395 ~~~-~~g~~~TGDlg~~d~~G~  415 (415)
                      +.| .+|||+|||+|++|+||+
T Consensus       392 ~~~~~~g~~~TGDl~~~~~~g~  413 (517)
T PRK08008        392 KVLEADGWLHTGDTGYVDEEGF  413 (517)
T ss_pred             hcccCCCCeeccceEEECCCCc
Confidence            998 689999999999999985

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=2.3e-46  Score=368.75  Aligned_cols=362  Identities=23%  Similarity=0.363  Sum_probs=268.4

Q ss_pred             CCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccE
Q 014951            4 RGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKT   83 (415)
Q Consensus         4 ~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~   83 (415)
                      .|+++||+|+++++|+++++++++||+++|++++++++..+.+++.+++++++++++|+++...+.+.......  ....
T Consensus        70 ~gi~~gd~V~i~~~n~~e~~~~~la~~~~G~v~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~  147 (562)
T PRK12492         70 TDLVPGDRIAVQMPNVLQYPIAVFGALRAGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDT--GIEY  147 (562)
T ss_pred             cCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEeccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhcc--CceE
Confidence            49999999999999999999999999999999999999999999999999999999999876544433222110  1111


Q ss_pred             EEEec--CCCch------------hhHHhhhc-CceeecHHHHHhcCC-CCCCCCCCCCCCeEEEEecCCCCCCCceEEe
Q 014951           84 IVSFA--NVSSS------------QKKEAEEL-GVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVL  147 (415)
Q Consensus        84 v~~~~--~~~~~------------~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~  147 (415)
                      ++...  +....            ........ ......|++....+. ......+...+++++|+|||||||.||+|++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~  227 (562)
T PRK12492        148 LIEAKMGDLLPAAKGWLVNTVVDKVKKMVPAYHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAML  227 (562)
T ss_pred             EEeechhhccccccchhcccccccccccccccCCcccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEE
Confidence            11100  00000            00000000 001234555543321 1112234567899999999999999999999


Q ss_pred             ecHHHHHHhhhhhhhhhhcc----ccCCC-CCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC--CHHHHHHHHHhhC
Q 014951          148 TNQAIVAEVLSVDQMFVVTG----KVCSE-EDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELK  219 (415)
Q Consensus       148 th~~l~~~~~~~~~~~~~~~----~~~~~-~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~--~~~~~~~~i~~~~  219 (415)
                      +|+++..........+....    ..... .+++++.+|++|.+++.. ++..+..|+.+++...  ++..+++.+++++
T Consensus       228 s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~  307 (562)
T PRK12492        228 THGNLVANMLQVRACLSQLGPDGQPLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWR  307 (562)
T ss_pred             echhHHHHHHHHHHHHhcccccccccccCCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhC
Confidence            99999877665544331100    00222 357789999999999875 4556778887766542  8899999999999


Q ss_pred             CeEEEeCcHHHHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEec
Q 014951          220 PTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGA  299 (415)
Q Consensus       220 ~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G  299 (415)
                      +|++.++|+++..+++...                                     ....++        +++|.+++||
T Consensus       308 ~t~~~~~p~~~~~l~~~~~-------------------------------------~~~~~~--------~~lr~~~~gG  342 (562)
T PRK12492        308 FSALLGLNTLFVALMDHPG-------------------------------------FKDLDF--------SALKLTNSGG  342 (562)
T ss_pred             CceeeCcHHHHHHHHhCcC-------------------------------------cccccc--------cceeEEEecc
Confidence            9999999999988754110                                     001111        3799999999


Q ss_pred             CCCCHHHHHHHHHhcCCceEEeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEec
Q 014951          300 APLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRG  379 (415)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~  379 (415)
                      +++++++.+.+.+.+++++++.||+||++.++...........+++|+|+++++++|+| +++..  ++.|+.|||+++|
T Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd-~~~~~--~~~g~~Gel~v~g  419 (562)
T PRK12492        343 TALVKATAERWEQLTGCTIVEGYGLTETSPVASTNPYGELARLGTVGIPVPGTALKVID-DDGNE--LPLGERGELCIKG  419 (562)
T ss_pred             ccCCHHHHHHHHHHhCCceeeccCccccCceeeecCCcccccCCccceecCCCEEEEEC-CCCCC--CCCCCceEEEEeC
Confidence            99999999999988999999999999998876655433333457899999999999999 76654  4567999999999


Q ss_pred             CCccccccCCchhhhhhh-cCCceecCceEEEcCCCC
Q 014951          380 NTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       380 ~~~~~gY~~~~~~~~~~~-~~g~~~TGDlg~~d~~G~  415 (415)
                      +.++.|||++++.+.+.| .+|||+|||+|++|++|+
T Consensus       420 ~~~~~gY~~~~~~t~~~~~~~g~~~TGD~g~~~~~G~  456 (562)
T PRK12492        420 PQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDPDGF  456 (562)
T ss_pred             CccccccccCchhhhhcccCCCceecCcEEEECCCCe
Confidence            999999999999999888 589999999999999984

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=5.1e-47  Score=378.00  Aligned_cols=341  Identities=19%  Similarity=0.223  Sum_probs=256.3

Q ss_pred             CCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEec-CCCCC--HHHHHHHHHhcCceEEEEcCCChhhhhhcCccCC-CCc
Q 014951            6 VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPL-YDTLG--ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCC-LYL   81 (415)
Q Consensus         6 v~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l-~~~~~--~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~-~~~   81 (415)
                      +++||+|+++++|++++++++|||+++|++++|+ ++..+  .+++.+++++++++++|++.+..+.+........ ...
T Consensus        76 ~~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~  155 (631)
T PRK07769         76 TKPGDRVAILAPQNLDYLIAFFGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKER  155 (631)
T ss_pred             cCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhcccccc
Confidence            7999999999999999999999999999999999 55554  6889999999999999999876554433221110 011


Q ss_pred             cEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhhh
Q 014951           82 KTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQ  161 (415)
Q Consensus        82 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~  161 (415)
                      ..++.++....                  ..   ..........++++++|+|||||||.||||++||+++..++.....
T Consensus       156 ~~~~~~~~~~~------------------~~---~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~  214 (631)
T PRK07769        156 PRVIAVDAVPD------------------EV---GATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVID  214 (631)
T ss_pred             ceEEEcccccc------------------cc---ccccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHH
Confidence            22333221100                  00   0011112346789999999999999999999999999988776655


Q ss_pred             hhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC-----CHHHHHHHHHhhCC---eEEEeCcHHHHHH
Q 014951          162 MFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-----DVRYLMEDIQELKP---TMFSGVPRVYDRI  233 (415)
Q Consensus       162 ~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~-----~~~~~~~~i~~~~~---t~~~~~P~~~~~l  233 (415)
                      .+     .+..+|++++++|++|.+++...+.+++.|+++++.+.     ++..+++.++++++   +++.++|.++..+
T Consensus       215 ~~-----~~~~~d~~l~~~Pl~h~~gl~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l  289 (631)
T PRK07769        215 AL-----EGQEGDRGVSWLPFFHDMGLITVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEH  289 (631)
T ss_pred             Hc-----CCCCcceEEEeCCCcCchhhHHHHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHH
Confidence            44     67789999999999999999877777888999988742     78899999999886   7899999987765


Q ss_pred             HHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHh
Q 014951          234 YTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVT  313 (415)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~  313 (415)
                      .....  ...                              ......++        +++|.+++||+++++++.++|.+.
T Consensus       290 ~~~~~--~~~------------------------------~~~~~~~l--------~~lr~~~~gg~~l~~~~~~~~~~~  329 (631)
T PRK07769        290 AAARG--LPK------------------------------DGEPPLDL--------SNVKGLLNGSEPVSPASMRKFNEA  329 (631)
T ss_pred             HHhhc--cch------------------------------hcccCcch--------hheeeEEeccCCCCHHHHHHHHHH
Confidence            43100  000                              00000112        389999999999999999999887


Q ss_pred             cC------CceEEeeccCCCCceeeeecCCcc--------------------------cccCcccccccCeEEEEeecCC
Q 014951          314 SG------APLTQGYGLTESCSGCFTSLADVF--------------------------NMIGTVGVPMTTVEARLESVPE  361 (415)
Q Consensus       314 ~~------~~~~~~yG~tE~~~~~~~~~~~~~--------------------------~~~~~~G~~~~g~~~~i~~~~~  361 (415)
                      ++      ..+++.||+||++..+.....+..                          ....++|+|.++++++|+|.++
T Consensus       330 ~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd~~~  409 (631)
T PRK07769        330 FAPYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVDPET  409 (631)
T ss_pred             HhhcCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEEEEEcCCC
Confidence            73      359999999998766554322110                          0125789999999999998334


Q ss_pred             CCCCCCCCCCCCeEEEecCCccccccCCchhhhhhhc------------------CCceecCceEEEcCCCC
Q 014951          362 MGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV------------------DGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       362 ~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~~~~~------------------~g~~~TGDlg~~d~~G~  415 (415)
                      +.  +++.|+.|||+++||+++.|||++++.|.++|.                  +|||+|||+|+++ ||+
T Consensus       410 g~--~~~~ge~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~-dG~  478 (631)
T PRK07769        410 AS--ELPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYF-DGE  478 (631)
T ss_pred             Cc--CCCCCCEEEEEecCCCccccccCChhHHHHHHhhhcccccccccccCcccCCCeeeccccccEE-CCE
Confidence            43  455679999999999999999999999998883                  3899999999995 774

>PRK07787 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.2e-46  Score=360.15  Aligned_cols=322  Identities=26%  Similarity=0.362  Sum_probs=260.8

Q ss_pred             CCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEE
Q 014951            5 GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTI   84 (415)
Q Consensus         5 Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v   84 (415)
                      .++++|+|+++++|+++++++++||+++|++++|+++..+.+++..+++.++++.++++.+...          ......
T Consensus        41 ~L~~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~il~~~~~~~----------~~~~~~  110 (471)
T PRK07787         41 RVAGARRVAVLATPTLATVLAVVGALIAGVPVVPVPPDSGVAERRHILADSGAQAWLGPAPDDP----------AGLPHV  110 (471)
T ss_pred             HhccCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCCCChHHHHHHHHhcCCCEEEecCCccc----------ccccce
Confidence            4668999999999999999999999999999999999999999999999999999999864110          000000


Q ss_pred             EEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhhhhhh
Q 014951           85 VSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV  164 (415)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~  164 (415)
                       .+...              ...          ........++++++++|||||||.||+|.++|.++...+......+ 
T Consensus       111 -~~~~~--------------~~~----------~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-  164 (471)
T PRK07787        111 -PVRLH--------------ARS----------WHRYPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAW-  164 (471)
T ss_pred             -eeecc--------------ccc----------cccCCCCCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhc-
Confidence             00000              000          0011224578999999999999999999999999999887766555 


Q ss_pred             hccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHHHhhh
Q 014951          165 VTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKIS  242 (415)
Q Consensus       165 ~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~  242 (415)
                          .+..+|++++.+|++|..++.. ++.+++.|+++++.+. ++..+++.|+ +++|++.++|+++..+.+....   
T Consensus       165 ----~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~~---  236 (471)
T PRK07787        165 ----QWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTGRPTPEAYAQALS-EGGTLYFGVPTVWSRIAADPEA---  236 (471)
T ss_pred             ----CCCccceeEeccCCeeechhHHHHHHHHhcCCEEEecCCCCHHHHHHHHh-hCceEEEcchHHHHHHHhCccc---
Confidence                6778899999999999999875 7788999999998865 9999999999 9999999999999887641000   


Q ss_pred             cCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCCceEEee
Q 014951          243 SGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGY  322 (415)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~~~~y  322 (415)
                                                         ...        ..++|.+++||+++++++.+++.+.++.++++.|
T Consensus       237 -----------------------------------~~~--------l~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~Y  273 (471)
T PRK07787        237 -----------------------------------ARA--------LRGARLLVSGSAALPVPVFDRLAALTGHRPVERY  273 (471)
T ss_pred             -----------------------------------ccc--------ccceeEEEECCCCCCHHHHHHHHHHcCCCeeccc
Confidence                                               000        1379999999999999999999998999999999


Q ss_pred             ccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhhhhhh-cCCc
Q 014951          323 GLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGW  401 (415)
Q Consensus       323 G~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~~~~-~~g~  401 (415)
                      |+||++..+...... ....+++|+|++|++++|+| +++..++...++.|||+++|++++.||+++++.+.+.| .+||
T Consensus       274 G~tE~~~~~~~~~~~-~~~~~~vG~~~~g~~~~i~d-~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~  351 (471)
T PRK07787        274 GMTETLITLSTRADG-ERRPGWVGLPLAGVETRLVD-EDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGW  351 (471)
T ss_pred             CccccCcceecCCCC-cccCCcccccCCCcEEEEEC-CCCCCCCCCCCCceEEEEECcccchhhcCChhhchhcccCCCc
Confidence            999998654443322 22347899999999999999 77665543223489999999999999999999999988 5899


Q ss_pred             eecCceEEEcCCCC
Q 014951          402 FHTGDIGEWQPMEL  415 (415)
Q Consensus       402 ~~TGDlg~~d~~G~  415 (415)
                      |+|||+|++|+||+
T Consensus       352 ~~TGDlg~~~~dg~  365 (471)
T PRK07787        352 FRTGDVAVVDPDGM  365 (471)
T ss_pred             eecCceEEEcCCCC
Confidence            99999999999985

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=100.00  E-value=1.2e-45  Score=350.29  Aligned_cols=332  Identities=22%  Similarity=0.308  Sum_probs=269.4

Q ss_pred             CCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccE
Q 014951            4 RGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKT   83 (415)
Q Consensus         4 ~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~   83 (415)
                      .|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++.+++++++++.+....+.....       .
T Consensus        20 ~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~-------~   92 (408)
T TIGR01733        20 GGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDSALASRLAGLVL-------P   92 (408)
T ss_pred             hCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcCchhhhccccCC-------c
Confidence            789999999999999999999999999999999999999999999999999999999999876655432211       1


Q ss_pred             EEEecCCCchhhHHhhhcCceeecHHHHHhcC-CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhhhh
Q 014951           84 IVSFANVSSSQKKEAEELGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQM  162 (415)
Q Consensus        84 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~  162 (415)
                      ++.+...                 +....... ...........+++++++|||||||.||+|.+||+++..........
T Consensus        93 ~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTtG~pK~v~~s~~~~~~~~~~~~~~  155 (408)
T TIGR01733        93 IILVDPL-----------------ELAALDDAPAPPPPDAPSGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARR  155 (408)
T ss_pred             eEEechh-----------------hhhhcccccccccccCCCCCCCcEEEEEcCCCCCCCCEEEeccHHHHHHHHHHHHh
Confidence            1111110                 00000000 00111112457899999999999999999999999999988887665


Q ss_pred             hhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC----CHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHH
Q 014951          163 FVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGIS  238 (415)
Q Consensus       163 ~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  238 (415)
                      +     .+..+|++++..|++|.+++..++.++..|+++++.+.    .+..+.+.++++++|.+.++|.+++.+++...
T Consensus       156 ~-----~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~p~~~~~l~~~~~  230 (408)
T TIGR01733       156 Y-----GLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAALIAEHPVTVLNLTPSLLALLAAALP  230 (408)
T ss_pred             c-----CCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcCceEEEeCHHHHHHHHHhhh
Confidence            5     67789999999999999998889999999999998876    26899999999999999999999999876221


Q ss_pred             HhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcC-Cc
Q 014951          239 NKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG-AP  317 (415)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~-~~  317 (415)
                                                                      ...+++|.+++||+++++++.+++++.++ ..
T Consensus       231 ------------------------------------------------~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~  262 (408)
T TIGR01733       231 ------------------------------------------------PALASLRLVILGGEALTPALVDRWRARGPGAR  262 (408)
T ss_pred             ------------------------------------------------hcccCceEEEEeCccCCHHHHHHHHHhCCCcE
Confidence                                                            01148999999999999999999999997 89


Q ss_pred             eEEeeccCCCCceeeeecCCccc----ccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhh
Q 014951          318 LTQGYGLTESCSGCFTSLADVFN----MIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLT  393 (415)
Q Consensus       318 ~~~~yG~tE~~~~~~~~~~~~~~----~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~  393 (415)
                      +++.||+||++.++.........    +..++|.|+++++++|++ +++  .+++.|+.|||+++|+.++.||+++++.+
T Consensus       263 i~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~--~~~~~g~~Gel~v~~~~~~~gy~~~~~~~  339 (408)
T TIGR01733       263 LINLYGPTETTVWSTATLVDADDAPRESPVPIGRPLANTRLYVLD-DDL--RPVPVGVVGELYIGGPGVARGYLNRPELT  339 (408)
T ss_pred             EEecccCCceEEEEEEEEcCccccCCccccccCcccCCceEEEEC-CCC--CCCCCCCceEEEecCccccccccCChhhh
Confidence            99999999998877533222211    157899999999999999 665  44556799999999999999999999999


Q ss_pred             hhhhcC-------C--ceecCceEEEcCCCC
Q 014951          394 EEVIVD-------G--WFHTGDIGEWQPMEL  415 (415)
Q Consensus       394 ~~~~~~-------g--~~~TGDlg~~d~~G~  415 (415)
                      .+.|..       |  ||+|||+|++|++|+
T Consensus       340 ~~~~~~~~~~~~~~~~~~~TGDl~~~d~~g~  370 (408)
T TIGR01733       340 AERFVPDPFAGGDGARLYRTGDLVRYLPDGN  370 (408)
T ss_pred             hcceeeCCCCCCCCceEEECCceEEEcCCCC
Confidence            888732       2  999999999999985

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=100.00  E-value=2.2e-46  Score=402.23  Aligned_cols=336  Identities=21%  Similarity=0.290  Sum_probs=272.1

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |.+.|+++||+|+++++|+++++++++||+++|++++||+|..+.+++.++++.++++++|++.+....+...     ..
T Consensus       500 L~~~g~~~g~~V~l~~~~~~~~i~~~la~~~~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~-----~~  574 (1296)
T PRK10252        500 LRERGVKPGDSVAVALPRSVFLTLALHAIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADV-----PD  574 (1296)
T ss_pred             HHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccC-----CC
Confidence            4568999999999999999999999999999999999999999999999999999999999998765443221     00


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD  160 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~  160 (415)
                      . .++.++                     +..... .........++++++++|||||||.||||+++|+++.+.+.+..
T Consensus       575 ~-~~~~~~---------------------~~~~~~-~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~  631 (1296)
T PRK10252        575 L-TSLCYN---------------------APLAPQ-GAAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQ  631 (1296)
T ss_pred             c-eeeecc---------------------cccccc-cCCCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHH
Confidence            0 011111                     000000 01111233578999999999999999999999999999998877


Q ss_pred             hhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC----CHHHHHHHHHhhCCeEEEeCcHHHHHHHHH
Q 014951          161 QMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTG  236 (415)
Q Consensus       161 ~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~  236 (415)
                      ..+     .+.+.|++++..|++|..++..++.+++.|+++++.+.    ++..+++.++++++|++.++|+++..+++.
T Consensus       632 ~~~-----~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~  706 (1296)
T PRK10252        632 NHY-----PLTADDVVLQKTPCSFDVSVWEFFWPFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVAS  706 (1296)
T ss_pred             Hhc-----CCCCCCEEEEeCCcchhhhHHHHHHHHhCCCEEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhh
Confidence            766     78899999999999999998888999999999999763    899999999999999999999999887652


Q ss_pred             HHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCC
Q 014951          237 ISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGA  316 (415)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~  316 (415)
                      ......                                          . ....++|.+++||+++++++.+.+.+.++.
T Consensus       707 ~~~~~~------------------------------------------~-~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~  743 (1296)
T PRK10252        707 LTPEGA------------------------------------------R-QSCASLRQVFCSGEALPADLCREWQQLTGA  743 (1296)
T ss_pred             hccccc------------------------------------------c-ccCCCccEEEEecCCCCHHHHHHHHhcCCC
Confidence            211000                                          0 001379999999999999999999988899


Q ss_pred             ceEEeeccCCCCceeeeecCCc------ccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCc
Q 014951          317 PLTQGYGLTESCSGCFTSLADV------FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRP  390 (415)
Q Consensus       317 ~~~~~yG~tE~~~~~~~~~~~~------~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~  390 (415)
                      ++++.||+||++..++......      .....++|+|+++++++|+| +++..  ++.|+.|||+|+|+++++||++++
T Consensus       744 ~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~--~~~g~~Gel~i~g~~~~~GY~~~~  820 (1296)
T PRK10252        744 PLHNLYGPTEAAVDVSWYPAFGEELAAVRGSSVPIGYPVWNTGLRILD-ARMRP--VPPGVAGDLYLTGIQLAQGYLGRP  820 (1296)
T ss_pred             EEEeCCCcchhhheeeeeecccccccccCCCCCCcccccCCCEEEEEC-CCCCC--CCCCCceEEEecccccchhhCCCc
Confidence            9999999999987665543322      12236799999999999999 76654  456699999999999999999999


Q ss_pred             hhhhhhh-c------CCceecCceEEEcCCCC
Q 014951          391 DLTEEVI-V------DGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       391 ~~~~~~~-~------~g~~~TGDlg~~d~~G~  415 (415)
                      +.|.++| .      ++||+|||+|++|+||+
T Consensus       821 ~~t~~~f~~~~~~~~~~~y~TGDl~~~~~~G~  852 (1296)
T PRK10252        821 DLTASRFIADPFAPGERMYRTGDVARWLDDGA  852 (1296)
T ss_pred             ccchhhcccCCCCCCCEEEecCceEEEcCCCc
Confidence            9999988 2      34999999999999985

>PRK09088 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.5e-46  Score=359.92  Aligned_cols=331  Identities=24%  Similarity=0.367  Sum_probs=259.6

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |.+.|+++||+|+++++|+++++++++||+++|++++|+++.++++++..++++++++++|++++......         
T Consensus        39 l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~---------  109 (488)
T PRK09088         39 LRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRLSASELDALLQDAEPRLLLGDDAVAAGRT---------  109 (488)
T ss_pred             HHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEeeCccCCHHHHHHHHHhCCCCEEEEcchhhcccc---------
Confidence            35679999999999999999999999999999999999999999999999999999999999875432100         


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD  160 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~  160 (415)
                        ..+.+                  ..+.+.... ..........++++++++|||||||.||+|.++|+++...+..+.
T Consensus       110 --~~~~~------------------~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~  168 (488)
T PRK09088        110 --DVEDL------------------AAFIASADA-LEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFG  168 (488)
T ss_pred             --cccch------------------hhhhhhccc-cccccCCCCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHH
Confidence              00000                  001111110 011112234568899999999999999999999999988776655


Q ss_pred             hhhhhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC-CHHHHHHHHH--hhCCeEEEeCcHHHHHHHHH
Q 014951          161 QMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQ--ELKPTMFSGVPRVYDRIYTG  236 (415)
Q Consensus       161 ~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~--~~~~t~~~~~P~~~~~l~~~  236 (415)
                      ...     .....|++++.+|++|.+++.. +..++..|+++++.+. ++..++..+.  ++++|+++++|++++.+.+.
T Consensus       169 ~~~-----~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~  243 (488)
T PRK09088        169 VLG-----RVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQ  243 (488)
T ss_pred             Hhh-----CCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhC
Confidence            443     5678999999999999999875 5667888999988766 8888888886  48999999999999887541


Q ss_pred             HHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCC
Q 014951          237 ISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGA  316 (415)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~  316 (415)
                      .                                     .....++        +++|.+++||++++.+..+.+.+. +.
T Consensus       244 ~-------------------------------------~~~~~~~--------~~l~~~~~gG~~~~~~~~~~~~~~-g~  277 (488)
T PRK09088        244 P-------------------------------------GFDAAAL--------RHLTALFTGGAPHAAEDILGWLDD-GI  277 (488)
T ss_pred             c-------------------------------------CcCcccc--------ccceEEEecCCCCCHHHHHHHHHh-CC
Confidence            0                                     0000011        379999999999999888877753 89


Q ss_pred             ceEEeeccCCCCceeeeecCC--cccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhhh
Q 014951          317 PLTQGYGLTESCSGCFTSLAD--VFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTE  394 (415)
Q Consensus       317 ~~~~~yG~tE~~~~~~~~~~~--~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~  394 (415)
                      ++++.||+||++.+.......  ...+.+++|+|+++++++|+| +++..  ++.++.|||+++|++++.||+++++.+.
T Consensus       278 ~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d-~~~~~--~~~g~~Gel~v~~~~~~~gY~~~~~~~~  354 (488)
T PRK09088        278 PMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIPTPTVQTRVVD-DQGND--CPAGVPGELLLRGPNLSPGYWRRPQATA  354 (488)
T ss_pred             ceeeeecccccccccccCCCcccccccCCccccCCCCcEEEEEC-CCCCC--CcCCCceEEEEECCccchhhcCChhhhh
Confidence            999999999998754322211  122448899999999999998 66644  4566999999999999999999999998


Q ss_pred             hhh-cCCceecCceEEEcCCCC
Q 014951          395 EVI-VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       395 ~~~-~~g~~~TGDlg~~d~~G~  415 (415)
                      +.| .+|||+|||+|++|++|+
T Consensus       355 ~~~~~~g~~~TGDl~~~~~~g~  376 (488)
T PRK09088        355 RAFTGDGWFRTGDIARRDADGF  376 (488)
T ss_pred             hhhcCCCCeeecceEEEcCCCc
Confidence            888 589999999999999985

>PRK06145 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.5e-45  Score=358.31  Aligned_cols=341  Identities=23%  Similarity=0.330  Sum_probs=269.2

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |.+.|+++|++|+++++|+++++++++||+++|++++|+++..+.+++.++++.+++++++++.+.......        
T Consensus        44 L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~--------  115 (497)
T PRK06145         44 LHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAIVAL--------  115 (497)
T ss_pred             HHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHHhcCCcEEEEccchhhhhhc--------
Confidence            356799999999999999999999999999999999999999999999999999999999998765443210        


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD  160 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~  160 (415)
                      ....+.++....             ..+..+..............++++++++|||||||.||+|++||.++........
T Consensus       116 ~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~  182 (497)
T PRK06145        116 ETPKIVIDAAAQ-------------ADSRRLAQGGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHV  182 (497)
T ss_pred             ccceEEecCccc-------------chhHHHhccCCCCCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHH
Confidence            011222221100             0011111111111112345678999999999999999999999999987655443


Q ss_pred             hhhhhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHH
Q 014951          161 QMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGIS  238 (415)
Q Consensus       161 ~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  238 (415)
                      ..+     .++.+++++...|++|.+++.. .+.+++.|+++++.+. ++..+++.++++++|++.++|+++..++....
T Consensus       183 ~~~-----~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~  257 (497)
T PRK06145        183 IAL-----GLTASERLLVVGPLYHVGAFDLPGIAVLWVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPD  257 (497)
T ss_pred             Hhh-----CCCCCcEEEEecCchhHhHHHHHHHHHHhccCEEEECCcCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCC
Confidence            433     6788999999999999988865 5677899999988776 99999999999999999999999988764110


Q ss_pred             HhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhc-CCc
Q 014951          239 NKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAP  317 (415)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~-~~~  317 (415)
                                                           ....++        +++|.+++||+++++++.+++.+.+ +.+
T Consensus       258 -------------------------------------~~~~~~--------~~l~~~~~gG~~~~~~~~~~~~~~~~~~~  292 (497)
T PRK06145        258 -------------------------------------RDRFDL--------DSLAWCIGGGEKTPESRIRDFTRVFTRAR  292 (497)
T ss_pred             -------------------------------------cccccc--------ccceEEEecCCCCCHHHHHHHHHHcCCCc
Confidence                                                 000011        3789999999999999999998888 578


Q ss_pred             eEEeeccCCCCceeeeecCC-cccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhhhhh
Q 014951          318 LTQGYGLTESCSGCFTSLAD-VFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEV  396 (415)
Q Consensus       318 ~~~~yG~tE~~~~~~~~~~~-~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~~~  396 (415)
                      +++.||+||++..++..... .....+++|+|++++++++.+ +++..  ++.++.|||+++|+.++.||+++++.+.+.
T Consensus       293 v~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~--~~~~~~Gel~v~g~~~~~Gy~~~~~~~~~~  369 (497)
T PRK06145        293 YIDAYGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIAD-GAGRW--LPPNMKGEICMRGPKVTKGYWKDPEKTAEA  369 (497)
T ss_pred             eEEeecCcccCCcceeccCccccccCCCcccCCCCceEEEEC-CCCCC--CCCCCceEEEEECcchhhhhcCChHHHHHH
Confidence            99999999998865543322 223347899999999999999 66654  456699999999999999999999999999


Q ss_pred             hcCCceecCceEEEcCCCC
Q 014951          397 IVDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       397 ~~~g~~~TGDlg~~d~~G~  415 (415)
                      |.++||+|||+|++|+||+
T Consensus       370 ~~~~~~~TGDl~~~~~~g~  388 (497)
T PRK06145        370 FYGDWFRSGDVGYLDEEGF  388 (497)
T ss_pred             HhCCCeeccceEEEcCCCc
Confidence            9999999999999999985

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=1.1e-46  Score=431.17  Aligned_cols=334  Identities=19%  Similarity=0.248  Sum_probs=273.6

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |.++|+++||+|+|+++|++++++++|||+++|++++||+|.++.+++.+++++++++++|++....+.+....      
T Consensus      3137 L~~~gv~~g~~V~l~~~~s~~~vv~~lavl~aGa~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~~------ 3210 (3956)
T PRK12467       3137 LIAIGVGPDVLVGVAVERSVEMIVALLAVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAPA------ 3210 (3956)
T ss_pred             HHHcCCCCCCeEEEEeCCCHHHHHHHHHHHhhCcEeecCCCCChHHHHHHHHhCCCCcEEEechhhhhhccccc------
Confidence            45789999999999999999999999999999999999999999999999999999999999876544432111      


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD  160 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~  160 (415)
                      ...++.++...                   . .......+.....++++++++|||||||.||||+++|+++.+.+....
T Consensus      3211 ~~~~~~~~~~~-------------------~-~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~ 3270 (3956)
T PRK12467       3211 GDTALTLDRLD-------------------L-NGYSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIA 3270 (3956)
T ss_pred             CCceeeecchh-------------------h-cccCCCCCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHH
Confidence            11222222110                   0 001111222345789999999999999999999999999999998877


Q ss_pred             hhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC---CHHHHHHHHHhhCCeEEEeCcHHHHHHHHHH
Q 014951          161 QMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG---DVRYLMEDIQELKPTMFSGVPRVYDRIYTGI  237 (415)
Q Consensus       161 ~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~  237 (415)
                      ..+     .+..+|++++++|++|..+...++.+++.|+++++.+.   ++..+++.|+++++|++.++|+++..+++..
T Consensus      3271 ~~~-----~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~ 3345 (3956)
T PRK12467       3271 EAY-----ELDANDRVLLFMSFSFDGAQERFLWTLICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDA 3345 (3956)
T ss_pred             Hhc-----CCCcCCEEEEecCccHhHHHHHHHHHHhCCCEEEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhcc
Confidence            776     78899999999999999998889999999999999874   8999999999999999999999998875411


Q ss_pred             HHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhc-CC
Q 014951          238 SNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GA  316 (415)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~-~~  316 (415)
                      ..                                               ...++||.+++|||++++++.+.+.+.+ +.
T Consensus      3346 ~~-----------------------------------------------~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~ 3378 (3956)
T PRK12467       3346 GG-----------------------------------------------ADCASLDIYVFGGEAVPPAAFEQVKRKLKPR 3378 (3956)
T ss_pred             cc-----------------------------------------------cCCCCceEEEEecCCCCHHHHHHHHHhCCCC
Confidence            00                                               0013799999999999999999988776 57


Q ss_pred             ceEEeeccCCCCceeeeecCCcc----cccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchh
Q 014951          317 PLTQGYGLTESCSGCFTSLADVF----NMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDL  392 (415)
Q Consensus       317 ~~~~~yG~tE~~~~~~~~~~~~~----~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~  392 (415)
                      +++|.||+||++..++.......    ....++|+|++|++++|+| +++.+  ++.|+.|||+|+|+++++||+|+|++
T Consensus      3379 ~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~~~~--vp~G~~GEL~i~G~~v~~GY~~~~~~ 3455 (3956)
T PRK12467       3379 GLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSIYVLD-GQLNP--VPVGVAGELYIGGVGLARGYHQRPSL 3455 (3956)
T ss_pred             EEEeCcccchhEeeeEEEecccccccCCCCCCCccccCCCEEEEEC-CCCCC--CCCCCCceEEEcchhhhhhccCCccc
Confidence            89999999999887664433221    1236899999999999999 76654  45679999999999999999999999


Q ss_pred             hhhhh-cC-------CceecCceEEEcCCCC
Q 014951          393 TEEVI-VD-------GWFHTGDIGEWQPMEL  415 (415)
Q Consensus       393 ~~~~~-~~-------g~~~TGDlg~~d~~G~  415 (415)
                      |.++| .+       +||||||+|++|+||+
T Consensus      3456 T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~ 3486 (3956)
T PRK12467       3456 TAERFVADPFSGSGGRLYRTGDLARYRADGV 3486 (3956)
T ss_pred             chhhccCCCCCCCCceeeccchhheecCCCc
Confidence            99999 44       3699999999999995

>PRK06188 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.3e-45  Score=360.85  Aligned_cols=348  Identities=21%  Similarity=0.269  Sum_probs=272.6

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCC-ChhhhhhcCccCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN-KIPSILSCLPRCCL   79 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~-~~~~~~~~~~~~~~   79 (415)
                      |.+.|+++||+|+++++|+++++++++||+++|+++++++|..+.+++..+++.++++.+++++. .......... ...
T Consensus        54 L~~~gv~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~  132 (524)
T PRK06188         54 FEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLA-RVP  132 (524)
T ss_pred             HHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEEecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhh-hcC
Confidence            35679999999999999999999999999999999999999999999999999999999999876 3333322221 113


Q ss_pred             CccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhh
Q 014951           80 YLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSV  159 (415)
Q Consensus        80 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~  159 (415)
                      ....++.+......            ..+.+...............++++++++|||||||.||+|.++|.++...+...
T Consensus       133 ~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~  200 (524)
T PRK06188        133 SLKHVLTLGPVPDG------------VDLLAAAAKFGPAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQ  200 (524)
T ss_pred             CceEEEEeCCccch------------hhHHHhhhccCcccccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHH
Confidence            33445544332110            001111111011111122345679999999999999999999999999988876


Q ss_pred             hhhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHH
Q 014951          160 DQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGIS  238 (415)
Q Consensus       160 ~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  238 (415)
                      ...+     .+..++++++.+|++|..++. ++..++.|+++++.+. ++..+++.++++++|+++++|+++..+++...
T Consensus       201 ~~~~-----~~~~~~~~l~~~pl~~~~g~~-~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~  274 (524)
T PRK06188        201 LAEW-----EWPADPRFLMCTPLSHAGGAF-FLPTLLRGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPD  274 (524)
T ss_pred             Hhhc-----CCCcCcEEEEecCchhhhhHH-HHHHHHcCCEEEEcCCCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcC
Confidence            6655     678899999999999988864 5677889999999887 99999999999999999999999988765210


Q ss_pred             HhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCCce
Q 014951          239 NKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPL  318 (415)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~  318 (415)
                      .                                     ...++        +++|.+++||++++++....+.+.++..+
T Consensus       275 ~-------------------------------------~~~~l--------~~lr~~~~gg~~~~~~~~~~~~~~~~~~~  309 (524)
T PRK06188        275 L-------------------------------------RTRDL--------SSLETVYYGASPMSPVRLAEAIERFGPIF  309 (524)
T ss_pred             c-------------------------------------cCCCC--------cceeEEEEcCCCCCHHHHHHHHHHhCchh
Confidence            0                                     00011        38999999999999998888888889999


Q ss_pred             EEeeccCCCCceeeeecCCc-----ccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhh
Q 014951          319 TQGYGLTESCSGCFTSLADV-----FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLT  393 (415)
Q Consensus       319 ~~~yG~tE~~~~~~~~~~~~-----~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~  393 (415)
                      ++.||+||++..+.......     ....+++|+|++|++++|++ +++.  +++.|+.|||+++|+.++.||+++++.+
T Consensus       310 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~v~i~~-~~~~--~~~~g~~Gel~v~~~~~~~gy~~~~~~~  386 (524)
T PRK06188        310 AQYYGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLD-EDGR--EVAQGEVGEICVRGPLVMDGYWNRPEET  386 (524)
T ss_pred             hheeCccccCCceeecCchhccccccccCCccccccCCcEEEEEc-CCCC--CCCCCCeeEEEEECcchhhhhcCChHHh
Confidence            99999999976554432211     12347899999999999999 6665  4456799999999999999999999999


Q ss_pred             hhhhcCCceecCceEEEcCCCC
Q 014951          394 EEVIVDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       394 ~~~~~~g~~~TGDlg~~d~~G~  415 (415)
                      ...|.+|||+|||+|++|+||+
T Consensus       387 ~~~~~~g~~~TGDl~~~~~~g~  408 (524)
T PRK06188        387 AEAFRDGWLHTGDVAREDEDGF  408 (524)
T ss_pred             hhhhcCCceeecceEEEcCCcc
Confidence            9999999999999999999985

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=100.00  E-value=1.9e-45  Score=360.83  Aligned_cols=366  Identities=23%  Similarity=0.386  Sum_probs=271.4

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCC--hhhhhhcCccCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENK--IPSILSCLPRCC   78 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~--~~~~~~~~~~~~   78 (415)
                      |.+.|+++||+|+++++|+++++++++||+++|++++|++|..+.+++.++++.++++++|+++..  ...+.+....  
T Consensus        63 L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~--  140 (541)
T TIGR03205        63 LLRAGYGKDASVALYLGNTPDHPINFFGALKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEK--  140 (541)
T ss_pred             HHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEEEecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhc--
Confidence            456799999999999999999999999999999999999999999999999999999999998642  1111111111  


Q ss_pred             CCccEEEEecCCCc-hhhHH--hhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHH
Q 014951           79 LYLKTIVSFANVSS-SQKKE--AEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAE  155 (415)
Q Consensus        79 ~~~~~v~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~  155 (415)
                      .....++..+.... .....  ..........++++..............++++++++|||||||.||+|+++|.++...
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~  220 (541)
T TIGR03205       141 GLLDRLIVCEDDNWGKVGTPQAPIPADPRIVTYADFVKGAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSA  220 (541)
T ss_pred             ccceEEEEecccccccccccccccCCCcccccHHHHHhcCCCCCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHH
Confidence            11223333322110 00000  0000112344555554322222233456789999999999999999999999998765


Q ss_pred             hhhhhhhhhh-ccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHH
Q 014951          156 VLSVDQMFVV-TGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDR  232 (415)
Q Consensus       156 ~~~~~~~~~~-~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~  232 (415)
                      .... ..+.. ........+++++..|++|.+++.. ++.+++.|+++++... ++..+++.|+++++|++.++|+++..
T Consensus       221 ~~~~-~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~  299 (541)
T TIGR03205       221 VSIY-DVWGKPSRATRGDVERVICVLPLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIA  299 (541)
T ss_pred             HHHH-HhhcccccccCCCCceEEEeccHHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHH
Confidence            4422 11110 0112234589999999999988775 6678899999888765 99999999999999999999999987


Q ss_pred             HHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHH
Q 014951          233 IYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRV  312 (415)
Q Consensus       233 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~  312 (415)
                      +++..                                     .....++        +++|.+++||+++++++.+++++
T Consensus       300 l~~~~-------------------------------------~~~~~~~--------~~l~~i~~gg~~~~~~~~~~~~~  334 (541)
T TIGR03205       300 LANDP-------------------------------------SLEKRDL--------SSLATIGSGGAPLPVEVANFFER  334 (541)
T ss_pred             HHhCc-------------------------------------cccccCc--------cccceEEEccccCCHHHHHHHHH
Confidence            75310                                     0000011        37999999999999999999998


Q ss_pred             hcCCceEEeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchh
Q 014951          313 TSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDL  392 (415)
Q Consensus       313 ~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~  392 (415)
                      .++.++++.||+||++..+...........+++|.|++++.++|++.++.+ .+++.|+.|||+++|++++.||+++++.
T Consensus       335 ~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~d~~~-~~~~~g~~Gel~v~~~~~~~gy~~~~~~  413 (541)
T TIGR03205       335 KTGLKLKSGWGMTETCSPGTGHPPEGPDKPGSIGLMLPGIELDVVSLDDPT-KVLPPGEVGELRIRGPNVTRGYWNRPEE  413 (541)
T ss_pred             HhCCCeecccccccCCcccccCCCCCCCCCCCcceeccCceeEEEecCCCC-ccCCCCCeeEEEEecCCccccccCChhh
Confidence            889999999999999877655443333344789999999999987633322 4556779999999999999999999999


Q ss_pred             hhhhhcCCceecCceEEEcCCCC
Q 014951          393 TEEVIVDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       393 ~~~~~~~g~~~TGDlg~~d~~G~  415 (415)
                      +.+.|.++||+|||++++++||+
T Consensus       414 ~~~~~~~~~~~TGD~~~~~~~g~  436 (541)
T TIGR03205       414 SAEAFVGDRFLTGDIGYMDTDGY  436 (541)
T ss_pred             hHhhhccCCcccCceEEEcCCce
Confidence            99999899999999999999985

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PRK08315 AMP-binding domain protein; Validated

Probab=100.00  E-value=2.3e-45  Score=362.03  Aligned_cols=352  Identities=24%  Similarity=0.426  Sum_probs=274.2

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChh-----hhhhcCc
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP-----SILSCLP   75 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~-----~~~~~~~   75 (415)
                      |.+.|+++||+|+++++|+++++++++||+++|++++|++|.++.+++..++++++++++|++.+...     .+.....
T Consensus        60 L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~  139 (559)
T PRK08315         60 LLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAP  139 (559)
T ss_pred             HHHcCCCCCCEEEEECCCChHHHHHHHHHHHhCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhh
Confidence            35679999999999999999999999999999999999999999999999999999999999875422     1111111


Q ss_pred             cC------------CCCccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCC------CCCCCCCCCCCCeEEEEecCC
Q 014951           76 RC------------CLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT------LDCELPPKKKTNISTIMYTSG  137 (415)
Q Consensus        76 ~~------------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~i~~TSG  137 (415)
                      ..            .+..+.++.++...          ......++++.....      .........++++++++||||
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSG  209 (559)
T PRK08315        140 ELATCEPGQLQSARLPELRRVIFLGDEK----------HPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSG  209 (559)
T ss_pred             hhhcccccccccccCCCceeEEeecccC----------CcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCC
Confidence            00            12233444443211          011234444433220      011122345788999999999


Q ss_pred             CCCCCceEEeecHHHHHHhhhhhhhhhhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC--CHHHHHHH
Q 014951          138 TTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG--DVRYLMED  214 (415)
Q Consensus       138 tTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~--~~~~~~~~  214 (415)
                      |||.||+|.+||.++..++......+     .++.+|+++..+|++|..++.. ++.++..|+++++...  ++..+++.
T Consensus       210 tTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~  284 (559)
T PRK08315        210 TTGFPKGATLTHRNILNNGYFIGEAM-----KLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAA  284 (559)
T ss_pred             CCCCcceEEeeHHHHHHHHHHHHHhc-----CCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHH
Confidence            99999999999999998887766655     7789999999999999999875 6788999999986543  89999999


Q ss_pred             HHhhCCeEEEeCcHHHHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeE
Q 014951          215 IQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQA  294 (415)
Q Consensus       215 i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~  294 (415)
                      ++++++|+++++|+++..++....                                     .+..++        +++|.
T Consensus       285 l~~~~~t~~~~~P~~~~~~~~~~~-------------------------------------~~~~~~--------~~lr~  319 (559)
T PRK08315        285 VEEERCTALYGVPTMFIAELDHPD-------------------------------------FARFDL--------SSLRT  319 (559)
T ss_pred             HHHcCCeEEecchHHHHHHHhCcc-------------------------------------cCCCCc--------hhhhe
Confidence            999999999999999987654110                                     000011        37999


Q ss_pred             EEEecCCCCHHHHHHHHHhcCC-ceEEeeccCCCCceeeeecCCc--ccccCcccccccCeEEEEeecCC-CCCCCCCCC
Q 014951          295 MLSGAAPLPIHVEEFLRVTSGA-PLTQGYGLTESCSGCFTSLADV--FNMIGTVGVPMTTVEARLESVPE-MGYDALSSV  370 (415)
Q Consensus       295 v~~~G~~~~~~~~~~~~~~~~~-~~~~~yG~tE~~~~~~~~~~~~--~~~~~~~G~~~~g~~~~i~~~~~-~~~~~~~~~  370 (415)
                      +++||+++++++.+.+.+.++. ++++.||+||++.+++......  .....++|+|++|++++|+| ++ +.  +++.|
T Consensus       320 ~~~~G~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~~--~~~~g  396 (559)
T PRK08315        320 GIMAGSPCPIEVMKRVIDKMHMSEVTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVD-PETGE--TVPRG  396 (559)
T ss_pred             eEecCCCCCHHHHHHHHHHcCCcceeEEEcccccccceeecCcccchhhccCCCCccCCCcEEEEEc-CccCC--cCCCC
Confidence            9999999999999999888876 4999999999987665443322  22357899999999999999 55 54  44567


Q ss_pred             CCCeEEEecCCccccccCCchhhhhhh-cCCceecCceEEEcCCCC
Q 014951          371 PRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       371 ~~Gel~v~~~~~~~gY~~~~~~~~~~~-~~g~~~TGDlg~~d~~G~  415 (415)
                      +.|||+|+|+.++.||+++++.+...| .++||+|||+|++|+||+
T Consensus       397 ~~GEl~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~  442 (559)
T PRK08315        397 EQGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEEGY  442 (559)
T ss_pred             CceEEEEECchhhhhhcCChhHHhhcCCCCCCEEccceEEEcCCce
Confidence            999999999999999999999998888 789999999999999884

>PRK06164 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2e-45  Score=360.89  Aligned_cols=355  Identities=20%  Similarity=0.271  Sum_probs=268.5

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCCh-----hhhhhcCc
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI-----PSILSCLP   75 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~   75 (415)
                      |.+.|+++||+|+++++|+++++++++||+++|++++|+++..+.+++.++++.++++++|++.+..     +.+.....
T Consensus        52 L~~~g~~~g~~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~  131 (540)
T PRK06164         52 LAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPP  131 (540)
T ss_pred             HHHhCCCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccc
Confidence            3567999999999999999999999999999999999999999999999999999999999987642     12222222


Q ss_pred             cCCCCccEEEEecCCCchhhHHhhhcCceeecHHHHHhcC-CCC---CCCCCCCCCCeEEEEecCCCCCCCceEEeecHH
Q 014951           76 RCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLG-TLD---CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQA  151 (415)
Q Consensus        76 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~  151 (415)
                      ......+.++.++.......      ......+.+..... ...   .......++++++++|||||||.||+|+++|.+
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~  205 (540)
T PRK06164        132 DALPPLRAIAVVDDAADATP------APAPGARVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQAT  205 (540)
T ss_pred             cccCCcceEEEeccCcccCC------CCCcccccccccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHH
Confidence            22233445555442110000      00000111111110 000   001223468899999999999999999999999


Q ss_pred             HHHHhhhhhhhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHH
Q 014951          152 IVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVY  230 (415)
Q Consensus       152 l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~  230 (415)
                      +...+......+     .+..++++++.+|++|.+++..++.++..|+++++.+. ++..+++.|+++++|+++++|+++
T Consensus       206 l~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l  280 (540)
T PRK06164        206 LLRHARAIARAY-----GYDPGAVLLAALPFCGVFGFSTLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEML  280 (540)
T ss_pred             HHHHHHHHHHhc-----CCCCCCEEEEcCCchhHHHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHH
Confidence            998888776666     67789999999999999999888889999999998876 999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEec-CCCCHHHHHH
Q 014951          231 DRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGA-APLPIHVEEF  309 (415)
Q Consensus       231 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G-~~~~~~~~~~  309 (415)
                      ..+.+...                                      ...++        ++++.+.++| .+...++.++
T Consensus       281 ~~l~~~~~--------------------------------------~~~~~--------~~l~~~~~~~~~~~~~~~~~~  314 (540)
T PRK06164        281 RRILDTAG--------------------------------------ERADF--------PSARLFGFASFAPALGELAAL  314 (540)
T ss_pred             HHHHHhhc--------------------------------------ccCCC--------cceeeeeeccCCcchHHHHHH
Confidence            98865300                                      00001        3677776665 5566677777


Q ss_pred             HHHhcCCceEEeeccCCCCceeeeecCCcc--cccCcccccc-cCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccc
Q 014951          310 LRVTSGAPLTQGYGLTESCSGCFTSLADVF--NMIGTVGVPM-TTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGY  386 (415)
Q Consensus       310 ~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~--~~~~~~G~~~-~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY  386 (415)
                      +.+. ++++++.||+||++.++.....+..  ....+.|.++ +++.++|+| ++++ .+++.|+.||||++|++++.||
T Consensus       315 ~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d-~~~~-~~~~~g~~Gel~v~g~~~~~gY  391 (540)
T PRK06164        315 ARAR-GVPLTGLYGSSEVQALVALQPATDPVSVRIEGGGRPASPEARVRARD-PQDG-ALLPDGESGEIEIRAPSLMRGY  391 (540)
T ss_pred             Hhhc-CCceecceeeccccceeeccCCCCCCcceeccCccccCCCeEEEEec-CCCC-cCCCCCCeeEEEEecccccccc
Confidence            7654 8899999999999876655443221  2235678775 899999999 4433 4556779999999999999999


Q ss_pred             cCCchhhhhhh-cCCceecCceEEEcCCCC
Q 014951          387 YKRPDLTEEVI-VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       387 ~~~~~~~~~~~-~~g~~~TGDlg~~d~~G~  415 (415)
                      +++++.+.+.| .+|||+|||+|++|+||+
T Consensus       392 ~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~  421 (540)
T PRK06164        392 LDNPDATARALTDDGYFRTGDLGYTRGDGQ  421 (540)
T ss_pred             cCCchhhhhcccCCCceecCCeEEEcCCce
Confidence            99999999998 689999999999999984

>PLN02479 acetate-CoA ligase

Probab=100.00  E-value=1.5e-45  Score=363.09  Aligned_cols=365  Identities=22%  Similarity=0.330  Sum_probs=264.7

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccC---
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRC---   77 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~---   77 (415)
                      |.+.|+++||+|+++++|+++++++++||+++|++++||++.++.+++.++++.++++++|++++..+.........   
T Consensus        62 L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~  141 (567)
T PLN02479         62 LAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEK  141 (567)
T ss_pred             HHHcCCCCCCEEEEECCCcHHHHHHHHHHHhCCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhc
Confidence            35679999999999999999999999999999999999999999999999999999999999987655433321100   


Q ss_pred             ---CCCccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCC-CCCCCCCCeEEEEecCCCCCCCceEEeecHHHH
Q 014951           78 ---CLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE-LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV  153 (415)
Q Consensus        78 ---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~  153 (415)
                         ......++.+....................+++++........ .+....+++++++|||||||.||+|.+||+++.
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~  221 (567)
T PLN02479        142 KKSSFKPPLLIVIGDPTCDPKSLQYALGKGAIEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAY  221 (567)
T ss_pred             ccccCCCceEEEecCCcCCccccccccccCcccHHHHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHH
Confidence               0111233443321110000000011123456665543311111 122334567889999999999999999999987


Q ss_pred             HHhhhhhhhhhhccccCCCCCEEEEeCChhhHHHHHHHH-HhhhcCcEEEEeCCCHHHHHHHHHhhCCeEEEeCcHHHHH
Q 014951          154 AEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIET-HCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDR  232 (415)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~-~~l~~G~~vv~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~  232 (415)
                      .........+     .+..++++++.+|++|..++...+ ..++.|.++++...++..+++.++++++|++.++|+++..
T Consensus       222 ~~~~~~~~~~-----~~~~~~~~~~~~p~~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~  296 (567)
T PLN02479        222 LMALSNALIW-----GMNEGAVYLWTLPMFHCNGWCFTWTLAALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNT  296 (567)
T ss_pred             HHHHHHHhhc-----CCCCCCEEEEecchhhhhhHHHHHHHHhhcCceEeccCCCHHHHHHHHHHcCCeEEEecHHHHHH
Confidence            6655443333     567889999999999998876544 3466677766665699999999999999999999999998


Q ss_pred             HHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHH
Q 014951          233 IYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRV  312 (415)
Q Consensus       233 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~  312 (415)
                      +++.....                                     .       ....++++.++++|+++++++.+++++
T Consensus       297 l~~~~~~~-------------------------------------~-------~~~~~~l~~~~~~G~~~~~~~~~~~~~  332 (567)
T PLN02479        297 IVNAPKSE-------------------------------------T-------ILPLPRVVHVMTAGAAPPPSVLFAMSE  332 (567)
T ss_pred             HHhhhhhc-------------------------------------c-------cccccceeEEEEcCCCCCHHHHHHHHh
Confidence            86521100                                     0       000137899999999999999999887


Q ss_pred             hcCCceEEeeccCCCCceeeeec--C--------CcccccCcccccccCeE-EEEeecCCCCCCCCCCCCCCeEEEecCC
Q 014951          313 TSGAPLTQGYGLTESCSGCFTSL--A--------DVFNMIGTVGVPMTTVE-ARLESVPEMGYDALSSVPRGEICLRGNT  381 (415)
Q Consensus       313 ~~~~~~~~~yG~tE~~~~~~~~~--~--------~~~~~~~~~G~~~~g~~-~~i~~~~~~~~~~~~~~~~Gel~v~~~~  381 (415)
                      . +.++++.||+||+++.+....  +        .......+.|.+.+|+. ++|++.+++..++.+.++.|||+++|++
T Consensus       333 ~-~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~v~g~~  411 (567)
T PLN02479        333 K-GFRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNM  411 (567)
T ss_pred             c-CCceecccccccccccccceeccccccccCcccccccccccCCCcCCcCceeEEcCCCCcccCCCCCCceEEEEeccc
Confidence            5 889999999999865433221  0        00111246788888876 7888733444343333368999999999


Q ss_pred             ccccccCCchhhhhhhcCCceecCceEEEcCCCC
Q 014951          382 LFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       382 ~~~gY~~~~~~~~~~~~~g~~~TGDlg~~d~~G~  415 (415)
                      ++.|||++++.+.+.|.+|||+|||+|++|++|+
T Consensus       412 ~~~GY~~~~~~t~~~~~~g~~~TGDl~~~~~~g~  445 (567)
T PLN02479        412 VMKGYLKNPKANEEAFANGWFHSGDLGVKHPDGY  445 (567)
T ss_pred             hhhhhhcCcccccchhcCCceecceeEEEcCCcc
Confidence            9999999999999999999999999999999985

>PRK13388 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.2e-45  Score=359.59  Aligned_cols=338  Identities=16%  Similarity=0.189  Sum_probs=258.8

Q ss_pred             CccCCC-CCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCC
Q 014951            1 MRSRGV-NPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCL   79 (415)
Q Consensus         1 L~~~Gv-~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~   79 (415)
                      |.+.|+ ++||+|+++++|+++++++++||+++|++++||+|.++.+++..+++.++++++|++++....+....   .+
T Consensus        43 L~~~g~~~~~~~V~i~~~n~~~~v~~~lA~~~~Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~---~~  119 (540)
T PRK13388         43 LIALADPDRPLHVGVLLGNTPEMLFWLAAAALGGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLD---LP  119 (540)
T ss_pred             HHHhcCCCCCCEEEEECCCCcHHHHHHHHHHhCCCEEEEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhc---cc
Confidence            456799 89999999999999999999999999999999999999999999999999999999887665543321   11


Q ss_pred             CccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhh
Q 014951           80 YLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSV  159 (415)
Q Consensus        80 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~  159 (415)
                      .. .++.++..                .+.+++.......+.....++++++++|||||||.||+|.++|.++.......
T Consensus       120 ~~-~~i~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~  182 (540)
T PRK13388        120 GV-RVLDVDTP----------------AYAELVAAAGALTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRAL  182 (540)
T ss_pred             Cc-eEEEccch----------------hhhhhhccccCcCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHH
Confidence            22 22332211                12222221111112223567999999999999999999999999998877766


Q ss_pred             hhhhhhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHHHHHHH
Q 014951          160 DQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGI  237 (415)
Q Consensus       160 ~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~  237 (415)
                      ...+     .+..+|+++..+|++|.+++.. .+.++..|+++++.+. ++..+++.++++++|++..+|..+..++...
T Consensus       183 ~~~~-----~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~  257 (540)
T PRK13388        183 TERF-----GLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAAVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILATP  257 (540)
T ss_pred             HHHh-----CCCCCCEEEEeeCchhhcchHHHHHHHHHcCcEEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCC
Confidence            6655     6788999999999999988875 4457889999988765 8999999999999999999999987765310


Q ss_pred             HHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCCc
Q 014951          238 SNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP  317 (415)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~  317 (415)
                      .                                     ...        ....+++.+ + |+++.++....+.+.++.+
T Consensus       258 ~-------------------------------------~~~--------~~~~~l~~~-~-G~~~~~~~~~~~~~~~~~~  290 (540)
T PRK13388        258 E-------------------------------------RPD--------DADNPLRVA-F-GNEASPRDIAEFSRRFGCQ  290 (540)
T ss_pred             C-------------------------------------Ccc--------ccccceEEE-E-CCCCCHHHHHHHHHHhCCc
Confidence            0                                     000        000256643 3 6677888888888888999


Q ss_pred             eEEeeccCCCCceeeeecCCcccccCcccccccCeEEE-----------EeecCCCCCCCCCCCCCCeEEEe-cCCcccc
Q 014951          318 LTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEAR-----------LESVPEMGYDALSSVPRGEICLR-GNTLFSG  385 (415)
Q Consensus       318 ~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~-----------i~~~~~~~~~~~~~~~~Gel~v~-~~~~~~g  385 (415)
                      +++.||+||++.++....   ....+++|+|++|+++.           ++| +++. .....++.|||+++ |++++.|
T Consensus       291 l~~~YG~tE~~~~~~~~~---~~~~~~vG~p~~g~~i~~~~~~~~~~~~~~d-~~g~-~~~~~~~~GEl~v~~g~~~~~g  365 (540)
T PRK13388        291 VEDGYGSSEGAVIVVREP---GTPPGSIGRGAPGVAIYNPETLTECAVARFD-AHGA-LLNADEAIGELVNTAGAGFFEG  365 (540)
T ss_pred             eecccccccccceeecCC---CCCCCCCCCCCCCcEEEcCCCCccccceecc-Cccc-cccCCCcceEEEEecCCccccc
Confidence            999999999987665332   12347899999997653           222 2222 12234578999998 9999999


Q ss_pred             ccCCchhhhhhhcCCceecCceEEEcCCCC
Q 014951          386 YYKRPDLTEEVIVDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       386 Y~~~~~~~~~~~~~g~~~TGDlg~~d~~G~  415 (415)
                      |+++++.+.+.|.+|||+|||+|++|+||+
T Consensus       366 Y~~~~~~t~~~~~~g~~~TGD~~~~~~dg~  395 (540)
T PRK13388        366 YYNNPEATAERMRHGMYWSGDLAYRDADGW  395 (540)
T ss_pred             ccCChHHHHHHhhcCceeccceEEEcCCCc
Confidence            999999999999899999999999999985

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.6e-45  Score=361.16  Aligned_cols=365  Identities=24%  Similarity=0.381  Sum_probs=271.5

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |.+.|+++||+|+++++|+++++++++||+++|++++|++|..+.+++.++++.++++++|+++.....+......  ..
T Consensus        65 L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~--~~  142 (557)
T PRK07059         65 LQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAK--TA  142 (557)
T ss_pred             HHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCeEEeccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhcc--cC
Confidence            3567999999999999999999999999999999999999999999999999999999999988765544333221  11


Q ss_pred             ccEEEEecCCCc-hhhH------------Hh-hhcCceeecHHHHHhcC-CCCCCCCCCCCCCeEEEEecCCCCCCCceE
Q 014951           81 LKTIVSFANVSS-SQKK------------EA-EELGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGV  145 (415)
Q Consensus        81 ~~~v~~~~~~~~-~~~~------------~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v  145 (415)
                      .+.++....... ....            .. .........+++..... ..........++++++++|||||||.||+|
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v  222 (557)
T PRK07059        143 VKHVVVASMGDLLGFKGHIVNFVVRRVKKMVPAWSLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGA  222 (557)
T ss_pred             CceeEEecccccccccccccccccccccccccccCCCCcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEE
Confidence            223322211000 0000            00 00001123344444332 112223445678999999999999999999


Q ss_pred             EeecHHHHHHhhhhhhhhhh--ccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC--CHHHHHHHHHhhCC
Q 014951          146 VLTNQAIVAEVLSVDQMFVV--TGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKP  220 (415)
Q Consensus       146 ~~th~~l~~~~~~~~~~~~~--~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~--~~~~~~~~i~~~~~  220 (415)
                      +++|.++..++......+..  ..........+++.+|++|.+++.. .+.++..|++.++.+.  ++..+++.++++++
T Consensus       223 ~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~v  302 (557)
T PRK07059        223 TLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQV  302 (557)
T ss_pred             EeecHHHHHHHHHHhhhhcccccccCCCCCcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCC
Confidence            99999998765433222110  0001123457788999999988764 5667888888776654  88999999999999


Q ss_pred             eEEEeCcHHHHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecC
Q 014951          221 TMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAA  300 (415)
Q Consensus       221 t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~  300 (415)
                      |.+.++|.++..+....                                     .....++        +++|.++.||+
T Consensus       303 t~~~~~p~~~~~l~~~~-------------------------------------~~~~~~~--------~~l~~~~~gg~  337 (557)
T PRK07059        303 HIFPAVNTLYNALLNNP-------------------------------------DFDKLDF--------SKLIVANGGGM  337 (557)
T ss_pred             eeeecCHHHHHHHHcCc-------------------------------------CcCcCCc--------hhheEEEeccc
Confidence            99999999998875410                                     0011111        37899999999


Q ss_pred             CCCHHHHHHHHHhcCCceEEeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecC
Q 014951          301 PLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGN  380 (415)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~  380 (415)
                      ++++.+.+.+.+.++.++++.||+||++.++...........+++|.|+++++++|++ +++.  +++.|+.|||+++|+
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d-~~~~--~~~~g~~Gel~v~g~  414 (557)
T PRK07059        338 AVQRPVAERWLEMTGCPITEGYGLSETSPVATCNPVDATEFSGTIGLPLPSTEVSIRD-DDGN--DLPLGEPGEICIRGP  414 (557)
T ss_pred             cCCHHHHHHHHHHhCCCeeeccccccccchhhcCCCCCCCcCCcccCccCCcEEEEEC-CCCC--CCCCCCceEEEEeCC
Confidence            9999999999988999999999999998876655443333458999999999999999 6664  455679999999999


Q ss_pred             CccccccCCchhhhhhh-cCCceecCceEEEcCCCC
Q 014951          381 TLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       381 ~~~~gY~~~~~~~~~~~-~~g~~~TGDlg~~d~~G~  415 (415)
                      .++.||+++++.+.+.| .+|||+|||+|++|+||+
T Consensus       415 ~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~  450 (557)
T PRK07059        415 QVMAGYWNRPDETAKVMTADGFFRTGDVGVMDERGY  450 (557)
T ss_pred             ccchhhhcCHHHHhhhcccCCceecCcEEEEcCCCc
Confidence            99999999999998888 689999999999999985

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=6.8e-46  Score=368.39  Aligned_cols=338  Identities=19%  Similarity=0.242  Sum_probs=251.0

Q ss_pred             CCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEec-CCCCC--HHHHHHHHHhcCceEEEEcCCChhhhhhcCccCC-CCc
Q 014951            6 VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPL-YDTLG--ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCC-LYL   81 (415)
Q Consensus         6 v~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l-~~~~~--~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~-~~~   81 (415)
                      +++||+|+++++|+++++++++||+++|++++|+ ++.++  .+++.+++++++++++|++++..+.+........ ...
T Consensus        89 ~~~gd~V~l~~~n~~e~~~~~lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~  168 (612)
T PRK12476         89 AGPGDRVAILAPQGIDYVAGFFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRR  168 (612)
T ss_pred             cCCCCEEEEECCCChhHHHHHHHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccccC
Confidence            8999999999999999999999999999999999 57776  7899999999999999998876655433221110 011


Q ss_pred             cEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhhh
Q 014951           82 KTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQ  161 (415)
Q Consensus        82 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~  161 (415)
                      ..++.++....                     ............++++++|+|||||||.||||++||+++..++.....
T Consensus       169 ~~~i~~~~~~~---------------------~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~  227 (612)
T PRK12476        169 PRVIAIDAIPD---------------------SAGESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMIL  227 (612)
T ss_pred             ceEEEeccccc---------------------cccccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHH
Confidence            23343332110                     000011122346789999999999999999999999999877665444


Q ss_pred             hhhhcccc-CCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC-----CHHHHHHHHH--hhCCeEEEeCcHHHHHH
Q 014951          162 MFVVTGKV-CSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-----DVRYLMEDIQ--ELKPTMFSGVPRVYDRI  233 (415)
Q Consensus       162 ~~~~~~~~-~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~-----~~~~~~~~i~--~~~~t~~~~~P~~~~~l  233 (415)
                      .+     . +.+++++++++|++|.+++...+.+++.|+++++...     ++..+++.++  +++++.++.+|+++..+
T Consensus       228 ~~-----~~~~~~~~~l~~~Pl~h~~g~~~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l  302 (612)
T PRK12476        228 SI-----DLLDRNTHGVSWLPLYHDMGLSMIGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEW  302 (612)
T ss_pred             Hh-----ccCCCCceEEEeCCcccccchHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHH
Confidence            33     4 5778999999999999998765555555555555432     7889999995  58999999999988877


Q ss_pred             HHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHh
Q 014951          234 YTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVT  313 (415)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~  313 (415)
                      +......                                 ......++        +++| +++||+++++++.+++.+.
T Consensus       303 ~~~~~~~---------------------------------~~~~~~~l--------~~lr-~~~gg~~~~~~~~~~~~~~  340 (612)
T PRK12476        303 AAQRGLP---------------------------------AEGDDIDL--------SNVV-LIIGSEPVSIDAVTTFNKA  340 (612)
T ss_pred             HHHhcCh---------------------------------hhhcCcch--------hHhe-EEecccCCCHHHHHHHHHH
Confidence            5411000                                 00000111        3789 9999999999999999887


Q ss_pred             c---CC---ceEEeeccCCCCceeeeecCCcc--------------------------cccCcccccccCeEEEEeecCC
Q 014951          314 S---GA---PLTQGYGLTESCSGCFTSLADVF--------------------------NMIGTVGVPMTTVEARLESVPE  361 (415)
Q Consensus       314 ~---~~---~~~~~yG~tE~~~~~~~~~~~~~--------------------------~~~~~~G~~~~g~~~~i~~~~~  361 (415)
                      +   |.   .+++.||+||++..+....++..                          ...+++|+|++|++++|+| ++
T Consensus       341 ~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd-~~  419 (612)
T PRK12476        341 FAPYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAVIVD-PD  419 (612)
T ss_pred             HHhcCCCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEEEEEe-CC
Confidence            7   43   48999999998765543221100                          0125889999999999999 66


Q ss_pred             -CCCCCCCCCCCCeEEEecCCccccccCCchhhhhhhc-------------------CCceecCceEEEcCCCC
Q 014951          362 -MGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-------------------DGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       362 -~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~~~~~-------------------~g~~~TGDlg~~d~~G~  415 (415)
                       +..  ++.|+.|||+++|++++.|||++|+.|.++|.                   ++||+|||+|+++ ||+
T Consensus       420 ~g~~--~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~~-dG~  490 (612)
T PRK12476        420 TGAE--LPDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVYL-DGE  490 (612)
T ss_pred             CCcC--CCCCCEEEEEEcCCcccccccCChHHHHHHHhhhhccccccccccccccCCCCeeeccccceeE-CCE
Confidence             544  45679999999999999999999999998883                   2599999999985 774

>PRK12583 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=5.4e-45  Score=359.41  Aligned_cols=352  Identities=25%  Similarity=0.423  Sum_probs=272.8

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCCh-----hhhhhcCc
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI-----PSILSCLP   75 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~   75 (415)
                      |.+.|+++||+|+++++|+++++++++||+++|++++++++.++.+++..++++++++++|+++...     ..+.....
T Consensus        62 L~~~gi~~g~~V~i~~~~~~~~~~~~~a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~  141 (558)
T PRK12583         62 LLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLP  141 (558)
T ss_pred             HHHhCCCCCCEEEEECCCChHHHHHHHHHHhhCCEEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhh
Confidence            3467999999999999999999999999999999999999999999999999999999999986432     11111111


Q ss_pred             c------------CCCCccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCC------CCCCCCCCCCCeEEEEecCC
Q 014951           76 R------------CCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTL------DCELPPKKKTNISTIMYTSG  137 (415)
Q Consensus        76 ~------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~i~~TSG  137 (415)
                      .            ..+....++..+....          .....|++....+..      ........++++++++||||
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSG  211 (558)
T PRK12583        142 GLAEGQPGALACERLPELRGVVSLAPAPP----------PGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSG  211 (558)
T ss_pred             hhccccccccccccCCcceEEEEecCCCC----------ccccchHhhhhcccccccccccccccccCCCCcEEEEECCC
Confidence            0            0122233333322111          112334443322210      11122345788999999999


Q ss_pred             CCCCCceEEeecHHHHHHhhhhhhhhhhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC--CHHHHHHH
Q 014951          138 TTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG--DVRYLMED  214 (415)
Q Consensus       138 tTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~--~~~~~~~~  214 (415)
                      |||.||+|.++|.++..++......+     .+..+|++++..|++|.++... ++.+++.|+++++...  ++..+++.
T Consensus       212 sTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~  286 (558)
T PRK12583        212 TTGFPKGATLSHHNILNNGYFVAESL-----GLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQA  286 (558)
T ss_pred             CCCCCceEEeeHHHHHHHHHHHHHHh-----CCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHH
Confidence            99999999999999988887765555     6778999999999999999875 6778999999887643  89999999


Q ss_pred             HHhhCCeEEEeCcHHHHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeE
Q 014951          215 IQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQA  294 (415)
Q Consensus       215 i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~  294 (415)
                      ++++++|+++++|+++..++....                                     ....++        +++|.
T Consensus       287 i~~~~~t~l~~~P~~~~~l~~~~~-------------------------------------~~~~~~--------~~lr~  321 (558)
T PRK12583        287 VEEERCTALYGVPTMFIAELDHPQ-------------------------------------RGNFDL--------SSLRT  321 (558)
T ss_pred             HHHcCCeEEeccHHHHHHHHcccc-------------------------------------ccCCCc--------hhheE
Confidence            999999999999999876643110                                     000011        37999


Q ss_pred             EEEecCCCCHHHHHHHHHhcCC-ceEEeeccCCCCceeeeecCCc--ccccCcccccccCeEEEEeecCCCCCCCCCCCC
Q 014951          295 MLSGAAPLPIHVEEFLRVTSGA-PLTQGYGLTESCSGCFTSLADV--FNMIGTVGVPMTTVEARLESVPEMGYDALSSVP  371 (415)
Q Consensus       295 v~~~G~~~~~~~~~~~~~~~~~-~~~~~yG~tE~~~~~~~~~~~~--~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~  371 (415)
                      +++||+++++++.+++.+.++. .+++.||+||++.++.......  .....++|+|++++.++|+| +++  .+++.|+
T Consensus       322 i~~~G~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~~--~~~~~g~  398 (558)
T PRK12583        322 GIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVD-PDG--ATVPRGE  398 (558)
T ss_pred             EEecCCCCCHHHHHHHHHHcCCcceeccccccccccceeccCcccccccccCCCCccCCCCeEEEEC-CCC--CCCCCCC
Confidence            9999999999999999888864 7999999999998766543221  22357899999999999999 665  4566779


Q ss_pred             CCeEEEecCCccccccCCchhhhhhh-cCCceecCceEEEcCCCC
Q 014951          372 RGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       372 ~Gel~v~~~~~~~gY~~~~~~~~~~~-~~g~~~TGDlg~~d~~G~  415 (415)
                      .|||+++|+.++.||+++++.+.+.| .++||+|||+|++|+||+
T Consensus       399 ~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~dg~  443 (558)
T PRK12583        399 IGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDEQGY  443 (558)
T ss_pred             eeEEEEEeCccchhhcCChHHHHhhcCCCCCeeccceEEECCCcc
Confidence            99999999999999999999998888 789999999999999985

>PRK13383 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.3e-45  Score=357.08  Aligned_cols=334  Identities=20%  Similarity=0.219  Sum_probs=257.9

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |++.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++.+|++++....+....      
T Consensus        77 L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~------  150 (516)
T PRK13383         77 LTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGAD------  150 (516)
T ss_pred             HHhcCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEEEEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhh------
Confidence            45679999999999999999999999999999999999999999999999999999999999887655443311      


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD  160 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~  160 (415)
                       ..++.++...                 ....     .....+...++.++++|||||||.||+|.++|.... ......
T Consensus       151 -~~~~~~~~~~-----------------~~~~-----~~~~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~-~~~~~~  206 (516)
T PRK13383        151 -DAVAVIDPAT-----------------AGAE-----ESGGRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRS-AVGVWV  206 (516)
T ss_pred             -cceEEeccch-----------------hhhh-----cCCCCCCCCCCCcEEEECCCCCCCCCeeeecchhhh-hhhhHH
Confidence             1122222110                 0000     000112234567899999999999999999997432 111111


Q ss_pred             hhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHHH
Q 014951          161 QMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISN  239 (415)
Q Consensus       161 ~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~  239 (415)
                      ...  ....+..+|+++..+|++|.+++...+.++..|+++++... ++..+++.++++++|.+.++|.++..+.+....
T Consensus       207 ~~~--~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~  284 (516)
T PRK13383        207 TIL--DRTRLRTGSRISVAMPMFHGLGLGMLMLTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPPR  284 (516)
T ss_pred             hHH--hhhccCCCCeEEEecCCcchhhHHHHHHHHhcCCEEEECCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHhcccc
Confidence            111  11256789999999999999999877788999999988765 999999999999999999999999887642110


Q ss_pred             hhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCCceE
Q 014951          240 KISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLT  319 (415)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~~  319 (415)
                      ..                                   ...        ..+++|.+++||+++++++.+++.+.++..++
T Consensus       285 ~~-----------------------------------~~~--------~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~  321 (516)
T PRK13383        285 VR-----------------------------------ARN--------PLPQLRVVMSSGDRLDPTLGQRFMDTYGDILY  321 (516)
T ss_pred             cc-----------------------------------ccC--------CCCceEEEEECCCCCCHHHHHHHHHHcCchhh
Confidence            00                                   000        01379999999999999999999999999999


Q ss_pred             EeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhhhhhhcC
Q 014951          320 QGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVD  399 (415)
Q Consensus       320 ~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~~~~~~  399 (415)
                      +.||+||++..+...........+++|+|+++++++|+| +++.  +++.++.|||+++|+.++.||++++.   ..+.+
T Consensus       322 ~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~--~~~~g~~Gel~v~g~~~~~~Y~~~~~---~~~~~  395 (516)
T PRK13383        322 NGYGSTEVGIGALATPADLRDAPETVGKPVAGCPVRILD-RNNR--PVGPRVTGRIFVGGELAGTRYTDGGG---KAVVD  395 (516)
T ss_pred             hcccccccccceeccccccccCCCcccCCCCCcEEEEEC-CCCC--CCCCCCceEEEEecCcccccccCCch---hheec
Confidence            999999998665544333233457899999999999999 6664  45567999999999999999998764   33468


Q ss_pred             CceecCceEEEcCCCC
Q 014951          400 GWFHTGDIGEWQPMEL  415 (415)
Q Consensus       400 g~~~TGDlg~~d~~G~  415 (415)
                      |||+|||+|++|++|+
T Consensus       396 g~~~TGDl~~~d~~G~  411 (516)
T PRK13383        396 GMTSTGDMGYLDNAGR  411 (516)
T ss_pred             CceecceeEEEcCCcc
Confidence            9999999999999985

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=1.5e-45  Score=428.06  Aligned_cols=336  Identities=20%  Similarity=0.273  Sum_probs=271.5

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |++.|+++||+|+++++|++++++++|||+++|++++||+|.++.+++.+++++++++++|++.+....+...     ..
T Consensus      2045 L~~~gv~~g~~V~l~~~~s~~~~~~~lAil~aGa~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~-----~~ 2119 (5163)
T PRK12316       2045 LRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYVPLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPLP-----AG 2119 (5163)
T ss_pred             HHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhceEEeecCCCCCHHHHHHHHHhcCCCEEEeChhhhhhcccc-----cc
Confidence            4578999999999999999999999999999999999999999999999999999999999988755433210     01


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD  160 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~  160 (415)
                      . ..+.++..                  ... .......+.....++++++|+|||||||.||||+++|+++.+.+....
T Consensus      2120 ~-~~~~~~~~------------------~~~-~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~ 2179 (5163)
T PRK12316       2120 V-ARLPLDRD------------------AEW-ADYPDTAPAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAG 2179 (5163)
T ss_pred             c-ceEeccch------------------hhh-hccCccCCCCCCCCCCeEEEEeCccCCCCCCEeEEccHHHHHHHHHHH
Confidence            1 11111110                  000 000111122345789999999999999999999999999999998877


Q ss_pred             hhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC---CHHHHHHHHHhhCCeEEEeCcHHHHHHHHHH
Q 014951          161 QMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG---DVRYLMEDIQELKPTMFSGVPRVYDRIYTGI  237 (415)
Q Consensus       161 ~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~  237 (415)
                      ..+     .+.+.|+++.+.|++|..++..++.+++.|+++++.+.   ++..+++.|+++++|+++++|++++.+.+..
T Consensus      2180 ~~~-----~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~ 2254 (5163)
T PRK12316       2180 ERY-----ELSPADCELQFMSFSFDGAHEQWFHPLLNGARVLIRDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHA 2254 (5163)
T ss_pred             Hhc-----CCCCcceEEEecCchHHHHHHHHHHHHhCCCEEEeCCcccCCHHHHHHHHHHcCCeEEEcChHHHHHHHhhh
Confidence            766     78899999999999999888889999999999977654   7899999999999999999999999876521


Q ss_pred             HHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhc-CC
Q 014951          238 SNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GA  316 (415)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~-~~  316 (415)
                      ...                                              ....+||.+++|||++++++.+.|.+.+ +.
T Consensus      2255 ~~~----------------------------------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~ 2288 (5163)
T PRK12316       2255 ERD----------------------------------------------GRPPAVRVYCFGGEAVPAASLRLAWEALRPV 2288 (5163)
T ss_pred             hcc----------------------------------------------cCCcceeEEEEecccCCHHHHHHHHHhCCCc
Confidence            100                                              0002799999999999999999988765 57


Q ss_pred             ceEEeeccCCCCceeeeecCCccc----ccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchh
Q 014951          317 PLTQGYGLTESCSGCFTSLADVFN----MIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDL  392 (415)
Q Consensus       317 ~~~~~yG~tE~~~~~~~~~~~~~~----~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~  392 (415)
                      ++++.||+||++..++........    ...++|+|++|++++|+| +++.  +++.|+.|||+|+|+++++||+++|++
T Consensus      2289 ~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~--~vp~g~~GEl~i~G~~v~~GY~~~p~~ 2365 (5163)
T PRK12316       2289 YLFNGYGPTEAVVTPLLWKCRPQDPCGAAYVPIGRALGNRRAYILD-ADLN--LLAPGMAGELYLGGEGLARGYLNRPGL 2365 (5163)
T ss_pred             EEEECccchhheeeeeeeecccccccCCCcCCcccccCCCEEEEEC-CCCC--CCCCCCeeEEEecchhhcccccCChhh
Confidence            899999999998776544332221    125799999999999999 6665  455679999999999999999999999


Q ss_pred             hhhhh-c-------CCceecCceEEEcCCCC
Q 014951          393 TEEVI-V-------DGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       393 ~~~~~-~-------~g~~~TGDlg~~d~~G~  415 (415)
                      |.++| .       ++||||||+|++|+||+
T Consensus      2366 T~~~f~~~~~~~~~~~~yrTGDl~~~~~dG~ 2396 (5163)
T PRK12316       2366 TAERFVPDPFSASGERLYRTGDLARYRADGV 2396 (5163)
T ss_pred             hhhhccCCCCCCCCCeeEecccEEEEcCCCc
Confidence            99998 2       35999999999999985

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=100.00  E-value=7.7e-45  Score=356.49  Aligned_cols=355  Identities=20%  Similarity=0.284  Sum_probs=271.8

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |.++|+++||+|+++++|+++++++++||+++|++++|+++.++.+++..+++.++++.+|++.+..+.+.+..... +.
T Consensus        56 L~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~~  134 (542)
T PRK06018         56 LDRDGIKLGDRVATIAWNTWRHLEAWYGIMGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKL-PS  134 (542)
T ss_pred             HHHcCCCCCCEEEEEcCCchHHHHHHHHHHhcCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhhC-CC
Confidence            45689999999999999999999999999999999999999999999999999999999999988777665543322 33


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHH-HHh-hh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV-AEV-LS  158 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~-~~~-~~  158 (415)
                      .+.++...+......    ........+++++..............+++++++|||||||.||+|++||++.+ ... ..
T Consensus       135 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~  210 (542)
T PRK06018        135 VERYVVLTDAAHMPQ----TTLKNAVAYEEWIAEADGDFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMAN  210 (542)
T ss_pred             ccEEEEecccccccc----cCccccccHHHHhccCCcccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHh
Confidence            445554432211000    000123355666544322222234566889999999999999999999999743 222 22


Q ss_pred             hhhhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC--CHHHHHHHHHhhCCeEEEeCcHHHHHHHHH
Q 014951          159 VDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTG  236 (415)
Q Consensus       159 ~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~  236 (415)
                      ....+     .+..+|+++...|++|.+++...+.+++.|+++++...  ++..+++.++++++|++.++|+++..+++.
T Consensus       211 ~~~~~-----~~~~~d~~~~~~p~~h~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~  285 (542)
T PRK06018        211 NGDAL-----GTSAADTMLPVVPLFHANSWGIAFSAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQY  285 (542)
T ss_pred             hhhhc-----CCCCCCEEEEecCHHHHhhhHHHHhhhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhc
Confidence            22222     57789999999999999988877778899999988753  889999999999999999999999988653


Q ss_pred             HHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCC
Q 014951          237 ISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGA  316 (415)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~  316 (415)
                      ....                                     ..++        +++|.++++|+++++++.+++++ ++.
T Consensus       286 ~~~~-------------------------------------~~~~--------~~lr~~~~~G~~l~~~~~~~~~~-~~~  319 (542)
T PRK06018        286 MEKE-------------------------------------GLKL--------PHLKMVVCGGSAMPRSMIKAFED-MGV  319 (542)
T ss_pred             cccc-------------------------------------CCCc--------ccceEEEEcCCCCCHHHHHHHHH-hCC
Confidence            2110                                     0001        37999999999999999999998 899


Q ss_pred             ceEEeeccCCCCceeeeec-CCcc---------cccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccc
Q 014951          317 PLTQGYGLTESCSGCFTSL-ADVF---------NMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGY  386 (415)
Q Consensus       317 ~~~~~yG~tE~~~~~~~~~-~~~~---------~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY  386 (415)
                      ++++.||+||++.+..... ....         ....++|+|.+|++++|+| +++...+.+.+..|||+++|+.++.||
T Consensus       320 ~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~i~v~d-~~~~~~~~~~~~~Gel~i~g~~~~~gy  398 (542)
T PRK06018        320 EVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITD-DAGKELPWDGKTFGRLKVRGPAVAAAY  398 (542)
T ss_pred             CeEeeecccccCcccccccCccccccCCchhhhhccccCCCCCCCcEEEEEC-CCCCCCCCCCCceeEEEEecCCcchhh
Confidence            9999999999987654332 1110         1135789999999999999 777767665557899999999999999


Q ss_pred             cCCchhhhhhh-cCCceecCceEEEcCCCC
Q 014951          387 YKRPDLTEEVI-VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       387 ~~~~~~~~~~~-~~g~~~TGDlg~~d~~G~  415 (415)
                      |++.   ...+ .+|||+|||+|++|+||+
T Consensus       399 ~~~~---~~~~~~~~~~~TGDl~~~~~~g~  425 (542)
T PRK06018        399 YRVD---GEILDDDGFFDTGDVATIDAYGY  425 (542)
T ss_pred             hcCc---ccEecCCcEEEcCCEEEEcCCcc
Confidence            9842   2233 589999999999999985

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=100.00  E-value=1.1e-44  Score=357.07  Aligned_cols=362  Identities=24%  Similarity=0.397  Sum_probs=269.8

Q ss_pred             cCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCcc
Q 014951            3 SRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLK   82 (415)
Q Consensus         3 ~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~   82 (415)
                      +.|+++||+|+++++|+++++++++||+++|++++|++|.++.+++.++++.++++++|+++.....+.......  ...
T Consensus        70 ~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~--~~~  147 (560)
T PRK08751         70 ELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADT--PVK  147 (560)
T ss_pred             HhCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEEeccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCC--Ccc
Confidence            479999999999999999999999999999999999999999999999999999999999987765554433221  122


Q ss_pred             EEEEecCCC--c----h-hh---HHhh----h-cCceeecHHHHHhcC-CCCCCCCCCCCCCeEEEEecCCCCCCCceEE
Q 014951           83 TIVSFANVS--S----S-QK---KEAE----E-LGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVV  146 (415)
Q Consensus        83 ~v~~~~~~~--~----~-~~---~~~~----~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~  146 (415)
                      .++......  .    . ..   ....    . .......+.+..... ..........++++++++|||||||.||+|.
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~  227 (560)
T PRK08751        148 QVITTGLGDMLGFPKAALVNFVVKYVKKLVPEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAM  227 (560)
T ss_pred             EEEEechhhhcccccchhhhhhhhhhhccccccCCCccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEE
Confidence            333221000  0    0 00   0000    0 000112233333322 1112223456789999999999999999999


Q ss_pred             eecHHHHHHhhhhhhhhhhccccCCC-CCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC--CHHHHHHHHHhhCCeE
Q 014951          147 LTNQAIVAEVLSVDQMFVVTGKVCSE-EDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTM  222 (415)
Q Consensus       147 ~th~~l~~~~~~~~~~~~~~~~~~~~-~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~--~~~~~~~~i~~~~~t~  222 (415)
                      +||.++...+......+.... .+.. .+++++..|++|.+++.. .+..+..|+++++...  ++..+++.++++++|+
T Consensus       228 ~s~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~  306 (560)
T PRK08751        228 LTHRNLVANMQQAHQWLAGTG-KLEEGCEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTA  306 (560)
T ss_pred             EccHHHHHHHHHHHHhhcccc-ccCCCCceEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeE
Confidence            999999887765444331111 1223 467788899999999864 4556667777666543  8999999999999999


Q ss_pred             EEeCcHHHHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCC
Q 014951          223 FSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPL  302 (415)
Q Consensus       223 ~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~  302 (415)
                      +.++|.++..+.+.                                     ......++        +++|.+++||+++
T Consensus       307 ~~~~p~~~~~l~~~-------------------------------------~~~~~~~l--------~~lr~v~~gG~~~  341 (560)
T PRK08751        307 FTGVNTLFNGLLNT-------------------------------------PGFDQIDF--------SSLKMTLGGGMAV  341 (560)
T ss_pred             ecChHHHHHHHHcC-------------------------------------cCcCCcch--------hhheeeeeCCCCC
Confidence            99999999887541                                     00111122        2789999999999


Q ss_pred             CHHHHHHHHHhcCCceEEeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCc
Q 014951          303 PIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTL  382 (415)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~  382 (415)
                      ++.+.+.+++.+++++++.||+||++..+.....+.....+++|.|+++++++|+| +++..  ++.++.|||+++|+.+
T Consensus       342 ~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d-~~~~~--~~~g~~Gel~v~~~~~  418 (560)
T PRK08751        342 QRSVAERWKQVTGLTLVEAYGLTETSPAACINPLTLKEYNGSIGLPIPSTDACIKD-DAGTV--LAIGEIGELCIKGPQV  418 (560)
T ss_pred             CHHHHHHHHHHhCCeEEEeeccccCCCceecccccccccCCCcCccCCCceEEEEC-CCCCC--CCCCCceEEEEecCcc
Confidence            99999999998899999999999998776554433333347899999999999999 76654  4566899999999999


Q ss_pred             cccccCCchhhhhhh-cCCceecCceEEEcCCCC
Q 014951          383 FSGYYKRPDLTEEVI-VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       383 ~~gY~~~~~~~~~~~-~~g~~~TGDlg~~d~~G~  415 (415)
                      +.||+++++.+.+.| .+|||+|||+|++|++|+
T Consensus       419 ~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~g~  452 (560)
T PRK08751        419 MKGYWKRPEETAKVMDADGWLHTGDIARMDEQGF  452 (560)
T ss_pred             chhhcCChhhhhhccccCCCccccceEEEcCCce
Confidence            999999999998888 689999999999999985

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=2.8e-45  Score=419.67  Aligned_cols=337  Identities=19%  Similarity=0.222  Sum_probs=272.6

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |.++|+++|++|++++++++++++++|||+++|++++||+|.++.+++.+++++++++++|++.+....+...     ..
T Consensus      1616 L~~~Gv~~~~~V~l~~~~s~~~vv~~lavlkaG~~~vpldp~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~-----~~ 1690 (3956)
T PRK12467       1616 LIALGVGPEVLVGIAVERSLEMVVGLLAILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQARLPLP-----DG 1690 (3956)
T ss_pred             HHHcCCCCCCEEEEEccCCHHHHHHHHHhhccCceeeecCCCCCHHHHHHHHHhCCCCEEEeChhhhhhCccc-----cC
Confidence            4578999999999999999999999999999999999999999999999999999999999987654433210     01


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD  160 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~  160 (415)
                       ..++.++...                  ++........+.....++++++++|||||||.||||+++|+++.+.+.+..
T Consensus      1691 -~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~ayiiyTSGSTG~PKGV~~th~~l~~~~~~~~ 1751 (3956)
T PRK12467       1691 -LRSLVLDQED------------------DWLEGYSDSNPAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQ 1751 (3956)
T ss_pred             -CcEEEecccc------------------chhccCCCCCCCCCCCCcCcEEEEECCCcCCCCCEEEEcCHHHHHHHHHHH
Confidence             1222222210                  011111112223345679999999999999999999999999999988877


Q ss_pred             hhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC----CHHHHHHHHHhhCCeEEEeCcHHHHHHHHH
Q 014951          161 QMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTG  236 (415)
Q Consensus       161 ~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~  236 (415)
                      ..+     .+...|+++++.|++|..++..++.++..|+++++.+.    ++..+++.|+++++|++.++|++++.+.+.
T Consensus      1752 ~~~-----~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~lvi~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~ 1826 (3956)
T PRK12467       1752 EAY-----QLSAADVVLQFTSFAFDVSVWELFWPLINGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQM 1826 (3956)
T ss_pred             Hhc-----CCCcccEEEEecCccHHHHHHHHHHHHhCCCEEEEcChhhcCCHHHHHHHHHHcCCeEEECCHHHHHHHHhh
Confidence            666     77889999999999999998888999999999999864    789999999999999999999999987642


Q ss_pred             HHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhc-C
Q 014951          237 ISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-G  315 (415)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~-~  315 (415)
                      ...                                      .        ...+++|.+++|||++++++.+.|.+.+ +
T Consensus      1827 ~~~--------------------------------------~--------~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~ 1860 (3956)
T PRK12467       1827 DEQ--------------------------------------V--------EHPLSLRRVVCGGEALEVEALRPWLERLPD 1860 (3956)
T ss_pred             ccc--------------------------------------c--------ccCCCceEEEEccccCCHHHHHHHHHhCCC
Confidence            000                                      0        0013799999999999999999887766 4


Q ss_pred             CceEEeeccCCCCceeeeecCC----cccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCch
Q 014951          316 APLTQGYGLTESCSGCFTSLAD----VFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPD  391 (415)
Q Consensus       316 ~~~~~~yG~tE~~~~~~~~~~~----~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~  391 (415)
                      ..++|.||+||++..++.....    ......++|+|+++++++|+| +++..  ++.|+.|||+|+|+++++||+++|+
T Consensus      1861 ~~l~n~YG~TE~t~~~t~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~--vp~G~~GEl~i~G~~v~~GYl~~p~ 1937 (3956)
T PRK12467       1861 TGLFNLYGPTETAVDVTHWTCRRKDLEGRDSVPIGQPIANLSTYILD-ASLNP--VPIGVAGELYLGGVGLARGYLNRPA 1937 (3956)
T ss_pred             CeEEeCccCCcCEEeEEEEeccccccccCCCCCcccccCCCEEEEEC-CCCCC--CCCCCceEEEeccccccccccCChh
Confidence            6899999999998776644322    112246899999999999999 66654  4566999999999999999999999


Q ss_pred             hhhhhhc--------CCceecCceEEEcCCCC
Q 014951          392 LTEEVIV--------DGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       392 ~~~~~~~--------~g~~~TGDlg~~d~~G~  415 (415)
                      +|.++|.        ++||+|||+|++++||+
T Consensus      1938 ~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~ 1969 (3956)
T PRK12467       1938 LTAERFVADPFGTVGSRLYRTGDLARYRADGV 1969 (3956)
T ss_pred             hhhhhCcCCCCCCCCccceeccceEEECCCCC
Confidence            9999882        35999999999999985

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=6.8e-45  Score=358.65  Aligned_cols=363  Identities=26%  Similarity=0.455  Sum_probs=265.5

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |.+.|+++||+|+++++|++++++++|||+++|++++|++|..+.+++..+++.++++++++++.....+......  ..
T Consensus        66 L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~  143 (563)
T PRK06710         66 LQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSA--TK  143 (563)
T ss_pred             HHHcCCCCCCEEEEECCCChHHHHHHHHHHHcCeEEeccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchh--hc
Confidence            3467999999999999999999999999999999999999999999999999999999999998765544322211  11


Q ss_pred             ccEEEEecCCC-ch--hh-------H----H-hhh-cCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCce
Q 014951           81 LKTIVSFANVS-SS--QK-------K----E-AEE-LGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKG  144 (415)
Q Consensus        81 ~~~v~~~~~~~-~~--~~-------~----~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~  144 (415)
                      ...++...... ..  ..       .    . ... .......++.+...............+++++++|||||||.||+
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~  223 (563)
T PRK06710        144 IEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVVKVSESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKG  223 (563)
T ss_pred             cceeEEeccccccccccccccchhhcccccccccccccchhhhhhhhhhccccccccccCCCCCEEEEEcCCCCCCCCce
Confidence            12222211000 00  00       0    0 000 00000112221111111111112335789999999999999999


Q ss_pred             EEeecHHHHHHhhhhhhhhhhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeE
Q 014951          145 VVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTM  222 (415)
Q Consensus       145 v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~  222 (415)
                      |.++|.++..+.......+   .......+++++++|++|.+++.. ++.+++.|+++++.+. ++..+++.|+++++|+
T Consensus       224 v~~s~~~l~~~~~~~~~~~---~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~  300 (563)
T PRK06710        224 VMLTHKNLVSNTLMGVQWL---YNCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTL  300 (563)
T ss_pred             EEEehHHHHHHHHHHHhhc---cCCCCCCceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeE
Confidence            9999999876543322211   001234568899999999998865 5568889999998766 9999999999999999


Q ss_pred             EEeCcHHHHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCC
Q 014951          223 FSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPL  302 (415)
Q Consensus       223 ~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~  302 (415)
                      +.++|+++..+++..                                     .....++        +++|.+++||+++
T Consensus       301 ~~~~P~~~~~l~~~~-------------------------------------~~~~~~~--------~~lr~v~~gg~~~  335 (563)
T PRK06710        301 FPGAPTIYIALLNSP-------------------------------------LLKEYDI--------SSIRACISGSAPL  335 (563)
T ss_pred             EeccHHHHHHHHcCC-------------------------------------ccccCCh--------hhhhheeeCCCcC
Confidence            999999998875410                                     0011111        2789999999999


Q ss_pred             CHHHHHHHHHhcCCceEEeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCc
Q 014951          303 PIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTL  382 (415)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~  382 (415)
                      ++++.+++++.++.++++.||+||++..............+++|+|++++.+++++ ++++ .+++.|+.|||+++|+.+
T Consensus       336 ~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~-~~~~~g~~Gel~v~g~~~  413 (563)
T PRK06710        336 PVEVQEKFETVTGGKLVEGYGLTESSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMS-LETG-EALPPGEIGEIVVKGPQI  413 (563)
T ss_pred             CHHHHHHHHHhhCCCEecccccccCccccccCcccccccCCccCCCCCCCeEEEEE-CCCC-ccCCCCCceEEEEecCcc
Confidence            99999999998999999999999998765433322223347899999999999998 4333 455667999999999999


Q ss_pred             cccccCCchhhhhhhcCCceecCceEEEcCCCC
Q 014951          383 FSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       383 ~~gY~~~~~~~~~~~~~g~~~TGDlg~~d~~G~  415 (415)
                      +.||+++++.+...|.+|||+|||+|++|+||+
T Consensus       414 ~~gY~~~~~~~~~~~~~g~~~TGD~~~~~~~g~  446 (563)
T PRK06710        414 MKGYWNKPEETAAVLQDGWLHTGDVGYMDEDGF  446 (563)
T ss_pred             chhhhCChHHHhhhcccCcccccceEEEcCCCc
Confidence            999999999999888999999999999999984

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=1.9e-44  Score=351.43  Aligned_cols=357  Identities=20%  Similarity=0.231  Sum_probs=271.1

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |.+.|+++||+|+++++|+++++++++||+++|++++++++..+.+++.++++.++++++|++......+.......   
T Consensus        28 l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~---  104 (509)
T PRK12406         28 LAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVLIAHADLLHGLASALPAG---  104 (509)
T ss_pred             HHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhccCCcEEEEccchhhhhhhhhhcc---
Confidence            35689999999999999999999999999999999999999999999999999999999999887665543322111   


Q ss_pred             ccEEEEecCCCchhh-----HHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHH
Q 014951           81 LKTIVSFANVSSSQK-----KEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAE  155 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~  155 (415)
                       ..++..........     ............++++.....   .......+++++++|||||||.||+|.++|......
T Consensus       105 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~  180 (509)
T PRK12406        105 -VTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQE---PYDGPPVPQPQSMIYTSGTTGHPKGVRRAAPTPEQA  180 (509)
T ss_pred             -cceeecccccccccccccccccccCCCCccCHHHHhcccC---ccCCCCCCCceEEEECCCCCCCCceEEEechhHHHH
Confidence             11111111100000     000001112345555543221   122345789999999999999999999977654332


Q ss_pred             ---hhhhhhhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHH
Q 014951          156 ---VLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYD  231 (415)
Q Consensus       156 ---~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~  231 (415)
                         .......+     .+..++++++..|++|..+....+.++..|+++++.+. ++..+++.++++++|.+.++|+++.
T Consensus       181 ~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~  255 (509)
T PRK12406        181 AAAEQMRALIY-----GLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPRFDPEELLQLIERHRITHMHMVPTMFI  255 (509)
T ss_pred             HHHHHhhhhhc-----CCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEccCCCHHHHHHHHHHcCCeEEEccHHHHH
Confidence               22223333     56789999999999999887776677888999988776 9999999999999999999999998


Q ss_pred             HHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHH
Q 014951          232 RIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLR  311 (415)
Q Consensus       232 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~  311 (415)
                      .++......                                   ....+        .+++|.+++||+++++++.+++.
T Consensus       256 ~l~~~~~~~-----------------------------------~~~~~--------~~~l~~v~~gg~~~~~~~~~~~~  292 (509)
T PRK12406        256 RLLKLPEEV-----------------------------------RAKYD--------VSSLRHVIHAAAPCPADVKRAMI  292 (509)
T ss_pred             HHHhCchhh-----------------------------------cccCC--------CCceeEEEEcCCCCCHHHHHHHH
Confidence            875411000                                   00000        14899999999999999999999


Q ss_pred             HhcCCceEEeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccc-cccCCc
Q 014951          312 VTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFS-GYYKRP  390 (415)
Q Consensus       312 ~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~-gY~~~~  390 (415)
                      +.++..+++.||+||++.+++....+....++++|.|+++++++++| +++.  +++.|+.|||+++|+.++. +|++++
T Consensus       293 ~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~--~~~~g~~Gel~v~~~~~~~~~y~~~~  369 (509)
T PRK12406        293 EWWGPVIYEYYGSTESGAVTFATSEDALSHPGTVGKAAPGAELRFVD-EDGR--PLPQGEIGEIYSRIAGNPDFTYHNKP  369 (509)
T ss_pred             HHcCCcEEeeccccccCceEecCcccccccCCCcCccCCCcEEEEEC-CCCC--CCCCCCceEEEEECCccccccccCCc
Confidence            98999999999999999876654433334458899999999999999 6664  4456799999999998875 999999


Q ss_pred             hhhhhhhcCCceecCceEEEcCCCC
Q 014951          391 DLTEEVIVDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       391 ~~~~~~~~~g~~~TGDlg~~d~~G~  415 (415)
                      +.+.+.+.+|||+|||+|++|+||+
T Consensus       370 ~~~~~~~~~~~~~TGD~~~~~~~g~  394 (509)
T PRK12406        370 EKRAEIDRGGFITSGDVGYLDADGY  394 (509)
T ss_pred             hhcccccCCCCeEEccEEEEcCCce
Confidence            9888888899999999999999984

>PRK07867 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.1e-44  Score=351.66  Aligned_cols=331  Identities=18%  Similarity=0.242  Sum_probs=257.1

Q ss_pred             CCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEE
Q 014951            5 GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTI   84 (415)
Q Consensus         5 Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v   84 (415)
                      |+++|++|+++++|+++++++++||+++|++++|+++.++.+++.+++++++++++|++++....+....    ... .+
T Consensus        50 ~~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~----~~~-~~  124 (529)
T PRK07867         50 DPTRPPHVGVLLDNTPEFSLLLGAAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLD----PGV-RV  124 (529)
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHhcCCEEEEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhc----cCc-eE
Confidence            7899999999999999999999999999999999999999999999999999999999987765443321    111 22


Q ss_pred             EEecCCCchhhHHhhhcCceeecHHHHHhcC-CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhhhhh
Q 014951           85 VSFANVSSSQKKEAEELGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF  163 (415)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~  163 (415)
                      +..+.                ..+.+.+... ..........++++++++|||||||.||+|++||+++..........+
T Consensus       125 ~~~~~----------------~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~  188 (529)
T PRK07867        125 INVDS----------------PAWADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRF  188 (529)
T ss_pred             EEecc----------------ccHHHHhcccCCCCCCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhh
Confidence            22211                1133333221 111222345679999999999999999999999999988887766655


Q ss_pred             hhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHHHhh
Q 014951          164 VVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKI  241 (415)
Q Consensus       164 ~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~  241 (415)
                           .+...|++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.++++++|++.++|+.+..++.....  
T Consensus       189 -----~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~--  261 (529)
T PRK07867        189 -----GLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASIALRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPER--  261 (529)
T ss_pred             -----CCCcccEEEEecchhHHHHHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCc--
Confidence                 6778999999999999999875 5567889999988765 899999999999999999999998876541000  


Q ss_pred             hcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCCceEEe
Q 014951          242 SSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQG  321 (415)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~~~~  321 (415)
                                                     ...            ..+++|. ++||+++++.. ..+.+.++.++++.
T Consensus       262 -------------------------------~~~------------~~~~lr~-~~gg~~~~~~~-~~~~~~~g~~l~~~  296 (529)
T PRK07867        262 -------------------------------PDD------------ADNPLRI-VYGNEGAPGDI-ARFARRFGCVVVDG  296 (529)
T ss_pred             -------------------------------ccc------------cccceEE-EecCCCChHHH-HHHHHHhCCcEEEe
Confidence                                           000            0036774 56888887765 55666789999999


Q ss_pred             eccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCC------------CCeEEE-ecCCccccccC
Q 014951          322 YGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVP------------RGEICL-RGNTLFSGYYK  388 (415)
Q Consensus       322 yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~------------~Gel~v-~~~~~~~gY~~  388 (415)
                      ||+||++..+.....   ...+++|.|.++  +++++.+.+.  +++.++            .|||++ +|++++.||++
T Consensus       297 YG~TE~~~~~~~~~~---~~~~~~g~~~~~--~~i~~~~~~~--~~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~  369 (529)
T PRK07867        297 FGSTEGGVAITRTPD---TPPGALGPLPPG--VAIVDPDTGT--ECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYN  369 (529)
T ss_pred             ecccccccccccCCC---CCCCCcCCCCCC--EEEEECCCCC--CCCCCccccccccccCCcceEEEEecCCcccccccC
Confidence            999998865443221   234789999999  6777723333  344455            899999 99999999999


Q ss_pred             CchhhhhhhcCCceecCceEEEcCCCC
Q 014951          389 RPDLTEEVIVDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       389 ~~~~~~~~~~~g~~~TGDlg~~d~~G~  415 (415)
                      +++.+.+.|.+|||+|||+|++|++|+
T Consensus       370 ~~~~~~~~~~~g~~~TGD~~~~~~~g~  396 (529)
T PRK07867        370 DPEADAERMRGGVYWSGDLAYRDADGY  396 (529)
T ss_pred             ChHhhhhhhcCCeEeeccEEEEeCCCc
Confidence            999999999999999999999999985

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.4e-44  Score=351.89  Aligned_cols=353  Identities=19%  Similarity=0.246  Sum_probs=272.8

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |.+.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++..++++++++++|+++.....+..........
T Consensus        28 L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~  107 (502)
T PRK08276         28 LRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIVSAALADTAAELAAELPAG  107 (502)
T ss_pred             HHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEEEccchhhHHHHHhhhcccc
Confidence            45689999999999999999999999999999999999999999999999999999999999987766554433222113


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhh--h
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVL--S  158 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~--~  158 (415)
                      .+.++......           .....+++.....   ........++.++++|||||||.||+|+++|.++.....  .
T Consensus       108 ~~~~~~~~~~~-----------~~~~~~~~~~~~~---~~~~~~~~~~~a~i~~TSGtTG~PK~v~~~~~~~~~~~~~~~  173 (502)
T PRK08276        108 VPLLLVVAGPV-----------PGFRSYEEALAAQ---PDTPIADETAGADMLYSSGTTGRPKGIKRPLPGLDPDEAPGM  173 (502)
T ss_pred             ccEEEEeCCCC-----------CccccHHHHHhcC---CCCCCCCCCcceEEEECCCCCCCCceEEEccCCcchhhhhHH
Confidence            34444432211           1123444444321   112234567789999999999999999999877654321  1


Q ss_pred             hhhhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHHHHHHH
Q 014951          159 VDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGI  237 (415)
Q Consensus       159 ~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~  237 (415)
                      ........ ......+++++..|++|..++...+.++..|+++++.+. ++..+++.++++++|++.++|+++..+++..
T Consensus       174 ~~~~~~~~-~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~  252 (502)
T PRK08276        174 MLALLGFG-MYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEKFDAEEALALIERYRVTHSQLVPTMFVRMLKLP  252 (502)
T ss_pred             hhhhhhhc-ccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCc
Confidence            10110111 122477899999999999998887788999999988876 9999999999999999999999998876411


Q ss_pred             HHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCCc
Q 014951          238 SNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP  317 (415)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~  317 (415)
                      ..                                   .....++        +++|.+++||+++++++.+++.+.++..
T Consensus       253 ~~-----------------------------------~~~~~~~--------~~lr~i~~~g~~~~~~~~~~~~~~~~~~  289 (502)
T PRK08276        253 EE-----------------------------------VRARYDV--------SSLRVAIHAAAPCPVEVKRAMIDWWGPI  289 (502)
T ss_pred             cc-----------------------------------cCCCCCc--------ccceEEEecCCCCCHHHHHHHHHHhCcH
Confidence            00                                   0001111        3899999999999999999999988999


Q ss_pred             eEEeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhhhhhh
Q 014951          318 LTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI  397 (415)
Q Consensus       318 ~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~~~~  397 (415)
                      +++.||+||++.+++..........+++|+|+ ++.++|+| +++.  +++.|+.|||+++|+.++.||+++++.+...+
T Consensus       290 ~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d-~~~~--~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~  365 (502)
T PRK08276        290 IHEYYASSEGGGVTVITSEDWLAHPGSVGKAV-LGEVRILD-EDGN--ELPPGEIGTVYFEMDGYPFEYHNDPEKTAAAR  365 (502)
T ss_pred             hhhhcccccccceeEecCccccccCCCcceec-ccEEEEEC-CCCC--CCcCCCceEEEEECCCccchhcCCHHHHHHHh
Confidence            99999999999876655443334458899999 88999998 6664  44566999999999999999999999999998


Q ss_pred             -cCCceecCceEEEcCCCC
Q 014951          398 -VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       398 -~~g~~~TGDlg~~d~~G~  415 (415)
                       .+|||+|||+|++|+||+
T Consensus       366 ~~~~~~~TGD~~~~~~~g~  384 (502)
T PRK08276        366 NPHGWVTVGDVGYLDEDGY  384 (502)
T ss_pred             cCCCceeecceEEEcCCcC
Confidence             459999999999999985

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=4.3e-45  Score=424.19  Aligned_cols=336  Identities=20%  Similarity=0.241  Sum_probs=272.7

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |+++|+++||+|+++++|++++++++|||+++|++++||+|.++.+++.++++.++++++|++......+..      ..
T Consensus       553 L~~~gv~~g~~V~l~~~~s~~~i~~~la~~~aG~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~------~~  626 (5163)
T PRK12316        553 LIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLPL------AA  626 (5163)
T ss_pred             HHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCEEeccCccCcHHHHHHHHHhCCCCEEEEChhhhhhCCc------cc
Confidence            457899999999999999999999999999999999999999999999999999999999998765443211      00


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD  160 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~  160 (415)
                      ...++.++...                  ................++++++++|||||||.||||+++|+++.+.+.+..
T Consensus       627 ~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~  688 (5163)
T PRK12316        627 GVQVLDLDRPA------------------AWLEGYSEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQ  688 (5163)
T ss_pred             CceEEEecCcc------------------hhhccCCCCCCCCCCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHH
Confidence            11223322110                  001111112222345688999999999999999999999999999998877


Q ss_pred             hhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC----CHHHHHHHHHhhCCeEEEeCcHHHHHHHHH
Q 014951          161 QMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTG  236 (415)
Q Consensus       161 ~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~  236 (415)
                      ..+     .+..+|++++.+|++|..++..++.+++.|+++++.+.    ++..+++.|+++++|++.++|++++.+++.
T Consensus       689 ~~~-----~~~~~d~~l~~~p~~fd~~~~~~~~~L~~G~~l~i~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~  763 (5163)
T PRK12316        689 QAY-----GLGVGDTVLQKTPFSFDVSVWEFFWPLMSGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQD  763 (5163)
T ss_pred             Hhc-----CCCCCCEEEeeCCeehHHHHHHHHHHHhCCCEEEECCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhc
Confidence            766     77899999999999999999889999999999999852    899999999999999999999999987541


Q ss_pred             HHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhc-C
Q 014951          237 ISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-G  315 (415)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~-~  315 (415)
                      ..                                     ..  +        .+++|.+++|||++++++.+.+.+.+ +
T Consensus       764 ~~-------------------------------------~~--~--------~~~l~~~~~gGe~l~~~~~~~~~~~~~~  796 (5163)
T PRK12316        764 ED-------------------------------------VA--S--------CTSLRRIVCSGEALPADAQEQVFAKLPQ  796 (5163)
T ss_pred             cc-------------------------------------cc--c--------CCCccEEEEeeccCCHHHHHHHHHhCCC
Confidence            00                                     00  0        13799999999999999999886655 6


Q ss_pred             CceEEeeccCCCCceeeeecC-CcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhhh
Q 014951          316 APLTQGYGLTESCSGCFTSLA-DVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTE  394 (415)
Q Consensus       316 ~~~~~~yG~tE~~~~~~~~~~-~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~  394 (415)
                      .+++|.||+||++..++.... .......++|+|++|++++|+| +++.  +++.|+.|||+|+|++++.||+++|+.|.
T Consensus       797 ~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~--~~p~G~~GEl~i~G~~v~~GYl~~~~~t~  873 (5163)
T PRK12316        797 AGLYNLYGPTEAAIDVTHWTCVEEGGDSVPIGRPIANLACYILD-ANLE--PVPVGVLGELYLAGRGLARGYHGRPGLTA  873 (5163)
T ss_pred             CeEEeCcCcChheeeeeEEecccccCCCCCCccccCCCEEEEEC-CCCC--CCCCCCceEEEecccccChhhCCChhhhh
Confidence            899999999999865544332 2223347899999999999999 7665  45567999999999999999999999999


Q ss_pred             hhhc-------CCceecCceEEEcCCCC
Q 014951          395 EVIV-------DGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       395 ~~~~-------~g~~~TGDlg~~d~~G~  415 (415)
                      ++|.       ++||+|||+|++|+||+
T Consensus       874 ~~f~~~~~~~~~~~y~TGDl~~~~~dG~  901 (5163)
T PRK12316        874 ERFVPSPFVAGERMYRTGDLARYRADGV  901 (5163)
T ss_pred             hhCCCCCCCCCCeeEecCccEEECCCCC
Confidence            9882       35999999999999985

>PRK06178 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.3e-44  Score=355.16  Aligned_cols=362  Identities=22%  Similarity=0.331  Sum_probs=268.2

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |.+.|+++||+|+++++|+++++++++||+++|++++|++|..+.+++.+++++++++++++++...+.+.+.....  .
T Consensus        75 L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~--~  152 (567)
T PRK06178         75 LRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAET--S  152 (567)
T ss_pred             HHHcCCCCCCEEEEECCCCcHHHHHHHHHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccC--C
Confidence            35679999999999999999999999999999999999999999999999999999999999988776665443321  2


Q ss_pred             ccEEEEecCCCchhhH--Hhhh--------cCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecH
Q 014951           81 LKTIVSFANVSSSQKK--EAEE--------LGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQ  150 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~--~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~  150 (415)
                      .+.++...........  ....        ....+.++.+...............++++++++|||||||.||+|++||.
T Consensus       153 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~  232 (567)
T PRK06178        153 LRHVIVTSLADVLPAEPTLPLPDSLRAPRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQR  232 (567)
T ss_pred             cceEEEeccccccccccccccccccccccccccccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccH
Confidence            3333332211100000  0000        00011112111111111112234567999999999999999999999999


Q ss_pred             HHHHHhhhhhhhhhhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcH
Q 014951          151 AIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPR  228 (415)
Q Consensus       151 ~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~  228 (415)
                      ++...........    ......|++++++|++|.+++.. ++.+++.|+++++.+. ++..++..++++++|.+.++|.
T Consensus       233 ~~~~~~~~~~~~~----~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~  308 (567)
T PRK06178        233 DMVYTAAAAYAVA----VVGGEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVD  308 (567)
T ss_pred             HHHHHHHHHHHHh----ccCCCCcEEEEecchHHHHHHHHHHHHHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHH
Confidence            9987655432221    25678999999999999999864 6778999999999876 9999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEE--EecCCCCHHH
Q 014951          229 VYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAML--SGAAPLPIHV  306 (415)
Q Consensus       229 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~--~~G~~~~~~~  306 (415)
                      .+..+....                                     .....++        ++++.+.  +.++++++++
T Consensus       309 ~~~~l~~~~-------------------------------------~~~~~~l--------~~l~~~~~~~~~~~~~~~~  343 (567)
T PRK06178        309 NAVELMDHP-------------------------------------RFAEYDL--------SSLRQVRVVSFVKKLNPDY  343 (567)
T ss_pred             HHHHHHhCC-------------------------------------CCCCCCc--------chheeeeeccccccCCHHH
Confidence            887765310                                     0001111        1455543  4568999999


Q ss_pred             HHHHHHhcCCceEE-eeccCCCCceeeeecC---Cc---ccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEec
Q 014951          307 EEFLRVTSGAPLTQ-GYGLTESCSGCFTSLA---DV---FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRG  379 (415)
Q Consensus       307 ~~~~~~~~~~~~~~-~yG~tE~~~~~~~~~~---~~---~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~  379 (415)
                      .+.+++.++..++. .||+||++..+.....   ..   ...++++|+|+||++++|+|.+++  .+++.|+.|||+++|
T Consensus       344 ~~~~~~~~g~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~~~--~~~~~g~~Gel~v~g  421 (567)
T PRK06178        344 RQRWRALTGSVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETG--ELLPLGAEGEIVVRT  421 (567)
T ss_pred             HHHHHHHhCCcccccccccccccccceeccccccCccccccCCcccccccCCcEEEEEcCCCC--CcCCCCCceEEEEEC
Confidence            99999988887665 7999998765443321   11   123467999999999999984334  345567999999999


Q ss_pred             CCccccccCCchhhhhhhcCCceecCceEEEcCCCC
Q 014951          380 NTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       380 ~~~~~gY~~~~~~~~~~~~~g~~~TGDlg~~d~~G~  415 (415)
                      ++++.||+++++.+...|.+|||+|||+|++|+||+
T Consensus       422 ~~v~~gY~~~~~~~~~~~~dg~~~TGDl~~~~~~g~  457 (567)
T PRK06178        422 PSLLKGYWNKPEATAEALRDGWLHTGDIGKIDEQGF  457 (567)
T ss_pred             CcccccccCChhhhhhcccCCceeecceEEEecCCe
Confidence            999999999999999888899999999999999884

>PRK13390 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.6e-44  Score=349.72  Aligned_cols=344  Identities=19%  Similarity=0.234  Sum_probs=258.1

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |.++|+++||+|+++++|++++++++|||+++|++++|+++.++++++.++++++++++++++............    .
T Consensus        41 L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----~  116 (501)
T PRK13390         41 LYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAINHHLTAPEADYIVGDSGARVLVASAALDGLAAKVGA----D  116 (501)
T ss_pred             HHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEeccccCCCHHHHHHHHHhcCCcEEEEcchhhhHHHHhhh----c
Confidence            456899999999999999999999999999999999999999999999999999999999998754332221111    1


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEe--ecHHHHHHhh-
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVL--TNQAIVAEVL-  157 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~--th~~l~~~~~-  157 (415)
                      ....+.+....           .....+++......    ......+++++|+|||||||.||+|++  +|.++..... 
T Consensus       117 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~  181 (501)
T PRK13390        117 LPLRLSFGGEI-----------DGFGSFEAALAGAG----PRLTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDP  181 (501)
T ss_pred             cceEEEecCcc-----------cccccHHHHhcccC----CCCCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhh
Confidence            11122221110           01122333322111    011123357999999999999999996  4555443221 


Q ss_pred             --h-hhhhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHHH
Q 014951          158 --S-VDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRI  233 (415)
Q Consensus       158 --~-~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l  233 (415)
                        . ....+     .+..+|+++..+|++|.+++......+..|+++++.+. ++..+++.|+++++|++.++|+++..+
T Consensus       182 ~~~~~~~~~-----~~~~~~~~~~~~p~~h~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l  256 (501)
T PRK13390        182 IVAIARAFY-----DISESDIYYSSAPIYHAAPLRWCSMVHALGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRL  256 (501)
T ss_pred             hHhhHHHHh-----CCCCCCeEEecccchhhhHHHHHHHHHhcCceEEEcCCcCHHHHHHHHHHcCCeEEEecHHHHHHH
Confidence              1 11122     56789999999999999988665556678999988776 899999999999999999999999887


Q ss_pred             HHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHh
Q 014951          234 YTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVT  313 (415)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~  313 (415)
                      ++.....                                   ....++        +++|.+++||+++++++.+.+++.
T Consensus       257 ~~~~~~~-----------------------------------~~~~~~--------~~l~~v~~~g~~~~~~~~~~~~~~  293 (501)
T PRK13390        257 LKLDADV-----------------------------------RTRYDV--------SSLRAVIHAAAPCPVDVKHAMIDW  293 (501)
T ss_pred             Hhccchh-----------------------------------cccCCh--------hhhheEEEcCCCCCHHHHHHHHHh
Confidence            6411000                                   000011        378999999999999999999988


Q ss_pred             cCCceEEeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhh
Q 014951          314 SGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLT  393 (415)
Q Consensus       314 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~  393 (415)
                      ++.++++.||+||++.++...........+++|+|+++ .++|+| +++.  +++.|+.|||+++|++++.||+++++.+
T Consensus       294 ~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g-~~~i~d-~~~~--~~~~g~~Gel~v~~~~~~~gy~~~~~~t  369 (501)
T PRK13390        294 LGPIVYEYYSSTEAHGMTFIDSPDWLAHPGSVGRSVLG-DLHICD-DDGN--ELPAGRIGTVYFERDRLPFRYLNDPEKT  369 (501)
T ss_pred             cCCceeeeecccccCceEEecchhhccCCCCcCCcccc-eEEEEC-CCCC--CCCCCCceEEEEecCCccccccCChhhh
Confidence            89999999999999876554332222335789999999 699998 6664  4567799999999999999999999999


Q ss_pred             hhhhc---CCceecCceEEEcCCCC
Q 014951          394 EEVIV---DGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       394 ~~~~~---~g~~~TGDlg~~d~~G~  415 (415)
                      .+.|.   ++|++|||+|++|+||+
T Consensus       370 ~~~~~~~~~~w~~tGDl~~~~~dg~  394 (501)
T PRK13390        370 AAAQHPAHPFWTTVGDLGSVDEDGY  394 (501)
T ss_pred             HHhhccCCCceEEcCceEEECCCCe
Confidence            88873   68999999999999985

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=100.00  E-value=8.3e-45  Score=346.81  Aligned_cols=301  Identities=17%  Similarity=0.154  Sum_probs=237.3

Q ss_pred             CccCCC-CCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCC
Q 014951            1 MRSRGV-NPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCL   79 (415)
Q Consensus         1 L~~~Gv-~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~   79 (415)
                      |++.|+ ++|++|+++++|+++++++++||+++|++++|++|.++.+++.++++.+++++++++.+.....         
T Consensus        36 L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------  106 (452)
T PRK07445         36 LQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWGLDQLKLSH---------  106 (452)
T ss_pred             HHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEecCcccccc---------
Confidence            356677 5799999999999999999999999999999999999999999999999999999876532110         


Q ss_pred             CccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhh
Q 014951           80 YLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSV  159 (415)
Q Consensus        80 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~  159 (415)
                             ....                           ........++++++++|||||||.||+|++||+++...+...
T Consensus       107 -------~~~~---------------------------~~~~~~~~~~~~~~i~~TSGTTG~PKgV~~t~~~l~~~~~~~  152 (452)
T PRK07445        107 -------PPPL---------------------------PSQGILPNLETGWIMIPTGGSSGQIRFAIHTWETLTASVQGF  152 (452)
T ss_pred             -------CCCC---------------------------CccccCCCCCCcEEEEeCCCCCCCCcEEEechHHHHHHHHHH
Confidence                   0000                           000012346899999999999999999999999998887766


Q ss_pred             hhhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHH
Q 014951          160 DQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGIS  238 (415)
Q Consensus       160 ~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  238 (415)
                      ...+     .+++ ++.++++|++|.+|+..++.+++.|+++++.+. ..........++++|++.++|++++.+++.. 
T Consensus       153 ~~~~-----~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~~~~~~t~~~~vP~~l~~l~~~~-  225 (452)
T PRK07445        153 QRYF-----QLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKRLKSGQELPPNPSDFFLSLVPTQLQRLLQLR-  225 (452)
T ss_pred             HHHh-----cCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChHhccchhhhhhhcCceEEEehHHHHHHHHhhC-
Confidence            5544     3433 467889999999999878889999999998864 2233334445788999999999999875410 


Q ss_pred             HhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCCce
Q 014951          239 NKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPL  318 (415)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~  318 (415)
                                                             ..++        +++|.+++||+++++++.+.+.+ ++.++
T Consensus       226 ---------------------------------------~~~l--------~~l~~i~~gG~~l~~~~~~~~~~-~~~~l  257 (452)
T PRK07445        226 ---------------------------------------PQWL--------AQFRTILLGGAPAWPSLLEQARQ-LQLRL  257 (452)
T ss_pred             ---------------------------------------hhhh--------hcceEEEECCccCCHHHHHHHHh-cCCeE
Confidence                                                   0001        38999999999999999988875 58999


Q ss_pred             EEeeccCCCCceeeeecCCc-ccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhhhhhh
Q 014951          319 TQGYGLTESCSGCFTSLADV-FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI  397 (415)
Q Consensus       319 ~~~yG~tE~~~~~~~~~~~~-~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~~~~  397 (415)
                      ++.||+||++..+....++. ....+++|+|+|+++++|++           ++.|||+++||.++.||++++..     
T Consensus       258 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~p~~~v~i~~-----------g~~Gel~v~g~~~~~gY~~~~~~-----  321 (452)
T PRK07445        258 APTYGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIPA-----------NQTGNITIQAQSLALGYYPQILD-----  321 (452)
T ss_pred             ecCcchhhhcccccccCchhhccCCCcCCccCCCCeEEEcC-----------CCcceEEEeCCccchhhcCCccC-----
Confidence            99999999876544333222 22347899999999999972           36899999999999999986431     


Q ss_pred             cCCceecCceEEEcCCCC
Q 014951          398 VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       398 ~~g~~~TGDlg~~d~~G~  415 (415)
                      .+|||+|||+|++|+||+
T Consensus       322 ~~g~~~TGDl~~~d~dG~  339 (452)
T PRK07445        322 SQGIFETDDLGYLDAQGY  339 (452)
T ss_pred             CCCEEECCCEEEEcCCCC
Confidence            478999999999999986

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=5.7e-44  Score=351.88  Aligned_cols=361  Identities=21%  Similarity=0.336  Sum_probs=269.7

Q ss_pred             cCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCcc
Q 014951            3 SRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLK   82 (415)
Q Consensus         3 ~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~   82 (415)
                      ++|+++||+|+++++|++++++++|||+++|++++|++|.++.+++.++++.+++++++++.+..+.+......  ...+
T Consensus        68 ~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~  145 (560)
T PRK08974         68 GLGLKKGDRVALMMPNLLQYPIALFGILRAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFK--TPVK  145 (560)
T ss_pred             hcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEeccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhh--cCcc
Confidence            37999999999999999999999999999999999999999999999999999999999987655544332211  1122


Q ss_pred             EEEEecCCCc--hhhHH-------------hhhcCceeecHHHHHhcCC-CCCCCCCCCCCCeEEEEecCCCCCCCceEE
Q 014951           83 TIVSFANVSS--SQKKE-------------AEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVV  146 (415)
Q Consensus        83 ~v~~~~~~~~--~~~~~-------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~  146 (415)
                      .++.......  .....             ..........+.+....+. .........++++++++|||||||.||+|.
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~  225 (560)
T PRK08974        146 HVILTRMGDQLSTAKGTLVNFVVKYIKRLVPKYHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAM  225 (560)
T ss_pred             eEEEecccccccccccccccchhhhcccccccccCCCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEE
Confidence            2222111000  00000             0000001112223222221 111123346789999999999999999999


Q ss_pred             eecHHHHHHhhhhhhhhhhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC--CHHHHHHHHHhhCCeEE
Q 014951          147 LTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMF  223 (415)
Q Consensus       147 ~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~--~~~~~~~~i~~~~~t~~  223 (415)
                      ++|.++..++......+.  .......+.++..+|++|.+++.. .+.+++.|+++++...  ++..+++.++++++|.+
T Consensus       226 ~t~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~  303 (560)
T PRK08974        226 LTHRNMLANLEQAKAAYG--PLLHPGKELVVTALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAI  303 (560)
T ss_pred             EchHHHHHHHHHHHHhhc--cccCCCccEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceE
Confidence            999999887654332221  012345678889999999988764 5667888988777643  88899999999999999


Q ss_pred             EeCcHHHHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCC
Q 014951          224 SGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLP  303 (415)
Q Consensus       224 ~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~  303 (415)
                      .++|+++..+.+...                                     ....++        +++|.+++||++++
T Consensus       304 ~~~p~~~~~l~~~~~-------------------------------------~~~~~~--------~~lr~~~~gg~~~~  338 (560)
T PRK08974        304 TGVNTLFNALLNNEE-------------------------------------FQELDF--------SSLKLSVGGGMAVQ  338 (560)
T ss_pred             cCcHHHHHHHHhCcC-------------------------------------cccCCc--------cceeEEEecCccCC
Confidence            999999998764110                                     000011        37999999999999


Q ss_pred             HHHHHHHHHhcCCceEEeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCcc
Q 014951          304 IHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLF  383 (415)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~  383 (415)
                      +.+.+++++.++.++++.||+||++..+.....+.....+++|.|+++++++|++ +++.  +++.|+.|||+++|+.++
T Consensus       339 ~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~--~~~~g~~Gel~v~g~~~~  415 (560)
T PRK08974        339 QAVAERWVKLTGQYLLEGYGLTECSPLVSVNPYDLDYYSGSIGLPVPSTEIKLVD-DDGN--EVPPGEPGELWVKGPQVM  415 (560)
T ss_pred             HHHHHHHHHHhCCcEEeeecccccCceeeccCCCCcccCCccccCcCCCEEEEEC-CCCC--CCCCCCceEEEEecCCcc
Confidence            9999999998899999999999998776655444334457899999999999999 6664  445669999999999999


Q ss_pred             ccccCCchhhhhhhcCCceecCceEEEcCCCC
Q 014951          384 SGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       384 ~gY~~~~~~~~~~~~~g~~~TGDlg~~d~~G~  415 (415)
                      .||+++++.+...|.+|||+|||+|++|++|+
T Consensus       416 ~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~  447 (560)
T PRK08974        416 LGYWQRPEATDEVIKDGWLATGDIAVMDEEGF  447 (560)
T ss_pred             hhhcCChhhhhhhhhcCCcccCCEEEEcCCce
Confidence            99999999999888899999999999999874

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=9.2e-45  Score=418.71  Aligned_cols=338  Identities=17%  Similarity=0.190  Sum_probs=273.9

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCC-C
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCC-L   79 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~-~   79 (415)
                      |++.|+++|++|+|+++++++++++++|++++|++++||+|.++.+++.+++++++++++|++............... .
T Consensus      3762 L~~~gv~~~~~V~v~~~~s~~~~v~~lavlkaG~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 3841 (4334)
T PRK05691       3762 LRAAGVGVDQPVALLAERGLDLLGMIVGSFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCA 3841 (4334)
T ss_pred             HHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccc
Confidence            457899999999999999999999999999999999999999999999999999999999999876544332221110 0


Q ss_pred             CccEEEEecCCCchhhHHhhhcCceeecHHHHHhcC-CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhh
Q 014951           80 YLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS  158 (415)
Q Consensus        80 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~  158 (415)
                      ....++..+..                     .... ....+.....+++++|++|||||||.||||+++|+++.+.+.+
T Consensus      3842 ~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~ 3900 (4334)
T PRK05691       3842 NRPRLLVWEEV---------------------QAGEVASHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLS 3900 (4334)
T ss_pred             cccceeeeccc---------------------ccccccccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHH
Confidence            11112211111                     0000 1111223456899999999999999999999999999999988


Q ss_pred             hhhhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC----CHHHHHHHHHhhCCeEEEeCcHHHHHHH
Q 014951          159 VDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIY  234 (415)
Q Consensus       159 ~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~  234 (415)
                      ....+     .+++.|+++...+++|..+...++.++..|+++++.+.    ++..+++.++++++|++.++|+++..++
T Consensus      3901 ~~~~~-----~~~~~~~~~~~~s~~fd~s~~~~~~~l~~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~ 3975 (4334)
T PRK05691       3901 KVPYL-----ALSEADVIAQTASQSFDISVWQFLAAPLFGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGML 3975 (4334)
T ss_pred             HHHhc-----CCCccceEEEecCCchhHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHH
Confidence            77776     78999999999999999999999999999999998864    7899999999999999999999998875


Q ss_pred             HHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhc
Q 014951          235 TGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS  314 (415)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~  314 (415)
                      +....                                                ...+||.+++|||++++++.+.|.+.+
T Consensus      3976 ~~~~~------------------------------------------------~~~~lr~~~~gGe~l~~~~~~~~~~~~ 4007 (4334)
T PRK05691       3976 AEDRQ------------------------------------------------ALDGLRWMLPTGEAMPPELARQWLQRY 4007 (4334)
T ss_pred             hhccc------------------------------------------------cCCCceEEEecCCcCCHHHHHHHHHhC
Confidence            41100                                                003799999999999999988887654


Q ss_pred             -CCceEEeeccCCCCceeeeecCCccc---ccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCc
Q 014951          315 -GAPLTQGYGLTESCSGCFTSLADVFN---MIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRP  390 (415)
Q Consensus       315 -~~~~~~~yG~tE~~~~~~~~~~~~~~---~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~  390 (415)
                       +++++|.||+||++..++....+...   ...++|+|+++++++|+| +++..+|  .|..|||+|+|+++++||+++|
T Consensus      4008 ~~~~l~n~YG~TE~t~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~~~~~p--~g~~GEL~i~G~~v~~GY~~~~ 4084 (4334)
T PRK05691       4008 PQIGLVNAYGPAECSDDVAFFRVDLASTRGSYLPIGSPTDNNRLYLLD-EALELVP--LGAVGELCVAGTGVGRGYVGDP 4084 (4334)
T ss_pred             CCCeEEeCccCccceeEEEEEEcccccccCCcCCCCCccCCCEEEEEC-CCCCCCC--CCCceEEEEecccccccccCCc
Confidence             78999999999999877654332221   225799999999999999 6665554  5599999999999999999999


Q ss_pred             hhhhhhhc--------CCceecCceEEEcCCCC
Q 014951          391 DLTEEVIV--------DGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       391 ~~~~~~~~--------~g~~~TGDlg~~d~~G~  415 (415)
                      ++|.++|.        ++||||||+|++++||+
T Consensus      4085 ~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~ 4117 (4334)
T PRK05691       4085 LRTALAFVPHPFGAPGERLYRTGDLARRRSDGV 4117 (4334)
T ss_pred             ccchhhcccCCCCCCCceeeccCcceeecCCCc
Confidence            99999982        46999999999999985

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=6e-45  Score=355.55  Aligned_cols=326  Identities=18%  Similarity=0.257  Sum_probs=239.1

Q ss_pred             CCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCC-------CCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCC
Q 014951            7 NPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYD-------TLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCL   79 (415)
Q Consensus         7 ~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~-------~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~   79 (415)
                      ++||+|+|+++|+++++++++||+++|+++++++.       ....+++.++++.++++++|++.+....+......   
T Consensus        52 ~~g~~V~l~~~~~~e~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~---  128 (525)
T PRK05851         52 DRPGAVGLVGEPTVELVAAIQGAWLAGAAVSILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDSS---  128 (525)
T ss_pred             CCCCeEEEEcCCCHHHHHHHHHHHHcCCCCcCCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhcc---
Confidence            79999999999999999999999999998654321       12234566778999999999987665444321110   


Q ss_pred             CccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhh
Q 014951           80 YLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSV  159 (415)
Q Consensus        80 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~  159 (415)
                           +.+.+                  +....... .........++++++|+|||||||.||||++||.++...+...
T Consensus       129 -----~~~~~------------------~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~  184 (525)
T PRK05851        129 -----VTVHD------------------LATAAHTN-RSASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGL  184 (525)
T ss_pred             -----ccccc------------------cccccccc-ccccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHH
Confidence                 00000                  00000000 0011123467899999999999999999999999999988876


Q ss_pred             hhhhhhccccCC-CCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC-----CHHHHHHHHHhhCCeEEEeCcHHHHHH
Q 014951          160 DQMFVVTGKVCS-EEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRI  233 (415)
Q Consensus       160 ~~~~~~~~~~~~-~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l  233 (415)
                      ...+     .+. .+|++++++|++|.+++..++.+++.|+++++.+.     ++..+++.++++++|++.. |.++..+
T Consensus       185 ~~~~-----~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~-p~~~~~~  258 (525)
T PRK05851        185 NARV-----GLDAATDVGCSWLPLYHDMGLAFLLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAA-PNFAYNL  258 (525)
T ss_pred             HHHh-----CCCCCCCeEEEcCCCccCccHHHHHHHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeC-CcHHHHH
Confidence            6655     666 89999999999999999888889999999999762     6788999999999998754 5544333


Q ss_pred             HHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHh
Q 014951          234 YTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVT  313 (415)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~  313 (415)
                      +......                                   ....++        +++|.+++||+++++++.++|.+.
T Consensus       259 l~~~~~~-----------------------------------~~~~~l--------~~lr~~~~gG~~l~~~~~~~~~~~  295 (525)
T PRK05851        259 IGKYARR-----------------------------------VSDVDL--------GALRVALNGGEPVDCDGFERFATA  295 (525)
T ss_pred             HHHhhcc-----------------------------------ccCCCH--------HHhheeEeccccCCHHHHHHHHHH
Confidence            2211000                                   000111        378999999999999999888764


Q ss_pred             ---cCC---ceEEeeccCCCCceeeeecCCc--------------ccccCcccccccCeEEEEeecCCCCCCCCCCCCCC
Q 014951          314 ---SGA---PLTQGYGLTESCSGCFTSLADV--------------FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRG  373 (415)
Q Consensus       314 ---~~~---~~~~~yG~tE~~~~~~~~~~~~--------------~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~G  373 (415)
                         ++.   .+++.||+||++..+....+..              ....+++|+|++|++++|+| +++. .+++.|+.|
T Consensus       296 ~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d-~~~~-~~~~~g~~G  373 (525)
T PRK05851        296 MAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISP-GDGA-AGVAGREIG  373 (525)
T ss_pred             HhhcCCChhhcccccchhhhceEEEecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEEC-CCCC-ccCCCCCeE
Confidence               344   4999999999987665432210              12236899999999999998 5553 345667999


Q ss_pred             eEEEecCCccccccCCchhhhhhhcCCceecCceEEEcCCCC
Q 014951          374 EICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       374 el~v~~~~~~~gY~~~~~~~~~~~~~g~~~TGDlg~~d~~G~  415 (415)
                      ||+++|++++.|||++++.+    .+|||+|||+|++| +|+
T Consensus       374 El~v~g~~~~~GY~~~~~~~----~~~~~~TGDl~~~~-~G~  410 (525)
T PRK05851        374 EIEIRGASMMSGYLGQAPID----PDDWFPTGDLGYLV-DGG  410 (525)
T ss_pred             EEEEecCchhhccccCCccC----CCCceeccceEEEE-CCE
Confidence            99999999999999998653    37899999999997 563

>PRK13391 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=7.4e-44  Score=347.32  Aligned_cols=349  Identities=20%  Similarity=0.240  Sum_probs=267.1

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |.++|+++||+|+++++|+++++++++||+++|++++++++.++.+++.++++.++++.++++......+....... ..
T Consensus        41 L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~-~~  119 (511)
T PRK13391         41 FRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLKQC-PG  119 (511)
T ss_pred             HHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEEeccccccCHHHHHHHHhccCCcEEEEchhhHHHHHHHHhcC-CC
Confidence            45679999999999999999999999999999999999999999999999999999999999987765544333221 22


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEee--cHHHHHHh--
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLT--NQAIVAEV--  156 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t--h~~l~~~~--  156 (415)
                      ....+.+.....         ......+++......   .......++.++++|||||||.||+|.++  |.++....  
T Consensus       120 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~---~~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~  187 (511)
T PRK13391        120 VRHRLVLDGDGE---------LEGFVGYAEAVAGLP---ATPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPL  187 (511)
T ss_pred             ceEEEEecCCCC---------CcccccHHHHhcCCC---CCCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHH
Confidence            333344332110         011233444332211   11122345678999999999999999964  65554332  


Q ss_pred             -hhhhhhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHHHH
Q 014951          157 -LSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIY  234 (415)
Q Consensus       157 -~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~  234 (415)
                       ......+     .+...+++++.+|++|.+++...+.++..|+++++.+. ++..+++.++++++|++.++|+++..+.
T Consensus       188 ~~~~~~~~-----~~~~~~~~l~~~p~~h~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~  262 (511)
T PRK13391        188 TAFLQRLW-----GFRSDMVYLSPAPLYHSAPQRAVMLVIRLGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRML  262 (511)
T ss_pred             HHHHHHhc-----CCCCCCeEEEcCCHHHHHHHHHHHHHHHcCceEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHH
Confidence             2222222     56788999999999999998877888999999999876 9999999999999999999999998875


Q ss_pred             HHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhc
Q 014951          235 TGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS  314 (415)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~  314 (415)
                      +.....                                   ....+        .+++|.+++||+++++++.+++++.+
T Consensus       263 ~~~~~~-----------------------------------~~~~~--------~~~l~~~~~gg~~~~~~~~~~~~~~~  299 (511)
T PRK13391        263 KLPEEV-----------------------------------RDKYD--------LSSLEVAIHAAAPCPPQVKEQMIDWW  299 (511)
T ss_pred             hCchhh-----------------------------------cccCC--------ccceeEEEEccCCCCHHHHHHHHHHc
Confidence            411100                                   00000        13899999999999999999999988


Q ss_pred             CCceEEeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhhh
Q 014951          315 GAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTE  394 (415)
Q Consensus       315 ~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~  394 (415)
                      +..+++.||+||++.++...........+++|+|+++ .++|+| +++.  +++.|+.|||+++|+ ++.||+++++.+.
T Consensus       300 g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~g-~~~i~d-~~~~--~~~~g~~Gel~~~g~-~~~gy~~~~~~~~  374 (511)
T PRK13391        300 GPIIHEYYAATEGLGFTACDSEEWLAHPGTVGRAMFG-DLHILD-DDGA--ELPPGEPGTIWFEGG-RPFEYLNDPAKTA  374 (511)
T ss_pred             CCceeeeeccccccceEEecCccccccCCCcCCcccc-eEEEEC-CCCC--CCCCCCceEEEEecC-cceEEcCChhHhH
Confidence            9999999999999877654433333345899999999 688888 6664  345679999999999 8899999999998


Q ss_pred             hhh-c-CCceecCceEEEcCCCC
Q 014951          395 EVI-V-DGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       395 ~~~-~-~g~~~TGDlg~~d~~G~  415 (415)
                      +.+ . ++||+|||+|++|+||+
T Consensus       375 ~~~~~~~~w~~TGD~g~~~~~g~  397 (511)
T PRK13391        375 EARHPDGTWSTVGDIGYVDEDGY  397 (511)
T ss_pred             HhhccCCCEEecCCEEEECCCcc
Confidence            887 3 49999999999999984

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=100.00  E-value=2.9e-44  Score=380.83  Aligned_cols=343  Identities=20%  Similarity=0.249  Sum_probs=264.0

Q ss_pred             CCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhh--hcCccCCCCc
Q 014951            4 RGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSIL--SCLPRCCLYL   81 (415)
Q Consensus         4 ~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~--~~~~~~~~~~   81 (415)
                      .|+++||+|+++++|+++++++++||+++|++++|+++..+.+++.+++++++++++|++++..+...  ...... +..
T Consensus       677 ~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~  755 (1140)
T PRK06814        677 KNTPPGENVGVMLPNANGAAVTFFALQSAGRVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEAL-EFG  755 (1140)
T ss_pred             hcCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHh-ccC
Confidence            58999999999999999999999999999999999999999999999999999999999876443211  100111 122


Q ss_pred             cEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhhh
Q 014951           82 KTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQ  161 (415)
Q Consensus        82 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~  161 (415)
                      ..++.+++.....        .....+.+...........+...++|+++++|||||||.||+|++||+++..+......
T Consensus       756 ~~~i~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~  827 (1140)
T PRK06814        756 IRIIYLEDVRAQI--------GLADKIKGLLAGRFPLVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAA  827 (1140)
T ss_pred             ceEEEehHhhccC--------ChHHHHHHHhhccCCccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHH
Confidence            3444443221000        00001111111111111112457899999999999999999999999999988877666


Q ss_pred             hhhhccccCCCCCEEEEeCChhhHHHHH-HHHHhhhcCcEEEEeCC--CHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHH
Q 014951          162 MFVVTGKVCSEEDTYFSFLPLAHIYDQI-IETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGIS  238 (415)
Q Consensus       162 ~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~vv~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  238 (415)
                      .+     ...++|++++.+|++|.+++. ..+.++..|+++++.+.  +...+.+.++++++|++.++|++++.+.+...
T Consensus       828 ~~-----~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~  902 (1140)
T PRK06814        828 RI-----DFSPEDKVFNALPVFHSFGLTGGLVLPLLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYAH  902 (1140)
T ss_pred             hh-----CCCCcCEEEEecchHHHHHHHHHHHHHHHcCCEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhcc
Confidence            55     678899999999999999985 47788999999998764  66788899999999999999999987654100


Q ss_pred             HhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCCce
Q 014951          239 NKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPL  318 (415)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~  318 (415)
                                                             ..++        +++|.+++||+++++++.+.+.+.++.++
T Consensus       903 ---------------------------------------~~~~--------~~lr~v~~gg~~l~~~~~~~~~~~~~~~~  935 (1140)
T PRK06814        903 ---------------------------------------PYDF--------RSLRYVFAGAEKVKEETRQTWMEKFGIRI  935 (1140)
T ss_pred             ---------------------------------------cccc--------cceeEEEEcCCcCCHHHHHHHHHHhCCcE
Confidence                                                   0001        38999999999999999999999899999


Q ss_pred             EEeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhhhh-hh
Q 014951          319 TQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEE-VI  397 (415)
Q Consensus       319 ~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~~-~~  397 (415)
                      ++.||+||++..+....+.. .+.+++|+|.||+++++.+ .++      .++.|||+++|++++.||+++++.... ..
T Consensus       936 ~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~g~~~~~~~-~~~------~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~ 1007 (1140)
T PRK06814        936 LEGYGVTETAPVIALNTPMH-NKAGTVGRLLPGIEYRLEP-VPG------IDEGGRLFVRGPNVMLGYLRAENPGVLEPP 1007 (1140)
T ss_pred             EeccccccccceEEecCCCC-CCCCcCCccCCCCeEEEee-cCC------CCCceEEEEeCCCcchhhcCCCCCCccccC
Confidence            99999999988766544332 3348999999999999987 332      247899999999999999987654322 23


Q ss_pred             cCCceecCceEEEcCCCC
Q 014951          398 VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       398 ~~g~~~TGDlg~~d~~G~  415 (415)
                      .+|||+|||+|++|+||+
T Consensus      1008 ~~g~~~TGDl~~~d~dG~ 1025 (1140)
T PRK06814       1008 ADGWYDTGDIVTIDEEGF 1025 (1140)
T ss_pred             CCCeEecCCEEEECCCCe
Confidence            689999999999999995

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=100.00  E-value=5e-44  Score=341.97  Aligned_cols=319  Identities=25%  Similarity=0.383  Sum_probs=257.8

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |++.|+++||+|+++++|+++++++++||+++|++++++++.++.+++..++++++++++++++........        
T Consensus        16 l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--------   87 (436)
T TIGR01923        16 LKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSLLEEKDFQ--------   87 (436)
T ss_pred             HHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCccccccee--------
Confidence            457899999999999999999999999999999999999999999999999999999999998763211000        


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcC-CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSV  159 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~  159 (415)
                                              ...+.++.... ...........+++++++|||||||.||+|+++|.++...+...
T Consensus        88 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~s~~~~~~~~~~~  143 (436)
T TIGR01923        88 ------------------------ADSLDRIEAAGRYETSLSASFNMDQIATLMFTSGTTGKPKAVPHTFRNHYASAVGS  143 (436)
T ss_pred             ------------------------ecchHhhhhcccccccccccCCcCceEEEEeCCCCCCCCcEEEEehHHHHHHHHHH
Confidence                                    00111111111 01111233456889999999999999999999999999988877


Q ss_pred             hhhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCCCHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHHH
Q 014951          160 DQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISN  239 (415)
Q Consensus       160 ~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~  239 (415)
                      ...+     .++++|++++.+|++|..++..++.++..|+++++.+.. ..+++.++++++|++.++|+++..+.+... 
T Consensus       144 ~~~~-----~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~-~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~-  216 (436)
T TIGR01923       144 KENL-----GFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKF-NQLLEMIANERVTHISLVPTQLNRLLDEGG-  216 (436)
T ss_pred             Hhhc-----CCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchH-HHHHHHHHHhCCeEEEeHHHHHHHHHhCcC-
Confidence            6665     778899999999999999988788899999999998653 499999999999999999999988754100 


Q ss_pred             hhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCCceE
Q 014951          240 KISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLT  319 (415)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~~  319 (415)
                                                          ..            .++|.++++|+++++++.+++.+ ++..++
T Consensus       217 ------------------------------------~~------------~~l~~~~~~G~~~~~~~~~~~~~-~~~~~~  247 (436)
T TIGR01923       217 ------------------------------------HN------------ENLRKILLGGSAIPAPLIEEAQQ-YGLPIY  247 (436)
T ss_pred             ------------------------------------CC------------CceEEEEECCCCCCHHHHHHHHH-hCCcee
Confidence                                                00            27999999999999999998875 599999


Q ss_pred             EeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhhhhhhcC
Q 014951          320 QGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVD  399 (415)
Q Consensus       320 ~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~~~~~~  399 (415)
                      +.||+||++..++....+......++|.|+++++++|.+ ++..       +.|||+++|+.++.||+++++.+...+.+
T Consensus       248 ~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~-------~~Gel~v~~~~~~~gy~~~~~~~~~~~~~  319 (436)
T TIGR01923       248 LSYGMTETCSQVTTATPEMLHARPDVGRPLAGREIKIKV-DNKE-------GHGEIMVKGANLMKGYLYQGELTPAFEQQ  319 (436)
T ss_pred             eEecCCccchhccCcCccccccccCCCccCCCcEEEEEe-CCCC-------CceEEEEECCccchhhCCChhhhhhhhcC
Confidence            999999998765544333222223599999999999954 2221       68999999999999999988888777788


Q ss_pred             CceecCceEEEcCCCC
Q 014951          400 GWFHTGDIGEWQPMEL  415 (415)
Q Consensus       400 g~~~TGDlg~~d~~G~  415 (415)
                      |||+|||+|++|+||+
T Consensus       320 ~~~~TGD~~~~~~dg~  335 (436)
T TIGR01923       320 GWFNTGDIGELDGEGF  335 (436)
T ss_pred             CCeeccceEEEcCCCC
Confidence            9999999999999984

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=100.00  E-value=4.2e-44  Score=348.62  Aligned_cols=333  Identities=19%  Similarity=0.255  Sum_probs=262.8

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |.+.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++..+++..+++.+|++.+.......        
T Consensus        42 L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~--------  113 (502)
T TIGR01734        42 IQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPVDTSIPSERIEMIIEAAGPELVIHTAELSIDAVG--------  113 (502)
T ss_pred             HHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCEEeCCCCcChHHHHHHHHHhcCCCEEEecccccccccC--------
Confidence            346799999999999999999999999999999999999999999999999999999999998765432211        


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD  160 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~  160 (415)
                      . .++.+..                  ..................+++.++++|||||||.||+|+++|+++...+....
T Consensus       114 ~-~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~  174 (502)
T TIGR01734       114 T-QIITLSA------------------LEQAETSGGPVSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWML  174 (502)
T ss_pred             C-ceEEchH------------------hhhhhhhcCCccccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHH
Confidence            0 1111111                  11111111111112234678999999999999999999999999998887765


Q ss_pred             hhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC----CHHHHHHHHHhhCCeEEEeCcHHHHHHHHH
Q 014951          161 QMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTG  236 (415)
Q Consensus       161 ~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~  236 (415)
                      ..+     ....+++++++.|++|..++..++.++..|+++++.+.    ++..+++.++++++|.+.++|.+++.++..
T Consensus       175 ~~~-----~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~  249 (502)
T TIGR01734       175 ADF-----PLSEGKQFLNQAPFSFDLSVMDLYPCLASGGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLD  249 (502)
T ss_pred             HhC-----CCCCCceEEeecCceechhHHHHHHHHHCCCEEEEcCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhc
Confidence            554     67789999999999999998888889999999998764    788999999999999999999998776431


Q ss_pred             HHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhc-C
Q 014951          237 ISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-G  315 (415)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~-~  315 (415)
                      ..                                     ...        ...++++.++++|+++++++.+++.+.+ +
T Consensus       250 ~~-------------------------------------~~~--------~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~  284 (502)
T TIGR01734       250 PN-------------------------------------FNQ--------ENYPHLTHFLFCGEELPVKTAKALLERFPK  284 (502)
T ss_pred             cc-------------------------------------ccc--------ccCCcccEEEEcCCcCCHHHHHHHHHHCCC
Confidence            00                                     000        0014799999999999999999988877 7


Q ss_pred             CceEEeeccCCCCceeeeecCCc----ccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCch
Q 014951          316 APLTQGYGLTESCSGCFTSLADV----FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPD  391 (415)
Q Consensus       316 ~~~~~~yG~tE~~~~~~~~~~~~----~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~  391 (415)
                      .++++.||+||++..+.......    .....++|.+.++++++|++ +++.  +++.|+.|||+++|+.++.||+++++
T Consensus       285 ~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~i~~-~~~~--~~~~g~~Gel~v~g~~~~~gy~~~~~  361 (502)
T TIGR01734       285 ATIYNTYGPTEATVAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMD-EEGE--PLPEGEKGEIVIVGPSVSKGYLNNPE  361 (502)
T ss_pred             cEEEeCccCCcceEEEEEEEccccccccCCccccccccCCCEEEEEC-CCCC--CCCCCCeeEEEEccccccccccCCcc
Confidence            89999999999876544322111    11235799999999999999 6664  44567999999999999999999999


Q ss_pred             hhhhhhc----CCceecCceEEEcCC
Q 014951          392 LTEEVIV----DGWFHTGDIGEWQPM  413 (415)
Q Consensus       392 ~~~~~~~----~g~~~TGDlg~~d~~  413 (415)
                      .+.+.|.    ++||+|||+|++|++
T Consensus       362 ~~~~~~~~~~~~~~~~TGDlg~~~~~  387 (502)
T TIGR01734       362 KTAEAFFSHEGQPAYRTGDAGTITDG  387 (502)
T ss_pred             cchHhheeCCCcEEEECCCEEEEECC
Confidence            9988772    359999999999975

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=2.2e-44  Score=415.67  Aligned_cols=334  Identities=21%  Similarity=0.316  Sum_probs=271.2

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |++.|+++|++|+++++++++++++++|++++|++++|++|.++.+++.+++++++++++|++.+....+....     .
T Consensus      1173 L~~~gv~~g~~V~i~~~~s~~~iv~~lailkaG~~~vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~~~-----~ 1247 (4334)
T PRK05691       1173 LRDKGVGPDVCVAIAAERSPQLLVGLLAILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQAE-----G 1247 (4334)
T ss_pred             HHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEecCcCChHHHHHHHHHhcCCCEEEecchhhhhccccc-----C
Confidence            46789999999999999999999999999999999999999999999999999999999999886554332110     0


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD  160 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~  160 (415)
                       ...+.++...                ...    .....+.....++++++++|||||||.||||+++|+++.+.+.+..
T Consensus      1248 -~~~~~~~~~~----------------~~~----~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~ 1306 (4334)
T PRK05691       1248 -VSAIALDSLH----------------LDS----WPSQAPGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQ 1306 (4334)
T ss_pred             -ceEEeecccc----------------ccc----cCCCCCCCCCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHHHH
Confidence             0111111110                000    0001112234678999999999999999999999999999988876


Q ss_pred             hhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC----CHHHHHHHHHhhCCeEEEeCcHHHHHHHHH
Q 014951          161 QMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTG  236 (415)
Q Consensus       161 ~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~  236 (415)
                      ..+     .+.++|++++..|++|..++..++.++..|+++++.+.    ++..+++.|+++++|++.++|++++.+.+.
T Consensus      1307 ~~~-----~~~~~d~~l~~~~~~fd~s~~~~~~~L~~G~~l~i~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~ 1381 (4334)
T PRK05691       1307 ATY-----ALDDSDVLMQKAPISFDVSVWECFWPLITGCRLVLAGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDE 1381 (4334)
T ss_pred             Hhc-----CCCCCCEEEEeCCccHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhC
Confidence            666     77899999999999999998888999999999999753    889999999999999999999999887541


Q ss_pred             HHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhc-C
Q 014951          237 ISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-G  315 (415)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~-~  315 (415)
                      ..                                       .   .     ..++||.+++|||++++++.+++.+.+ +
T Consensus      1382 ~~---------------------------------------~---~-----~~~~lr~~~~gGe~l~~~~~~~~~~~~~~ 1414 (4334)
T PRK05691       1382 PL---------------------------------------A---A-----ACTSLRRLFSGGEALPAELRNRVLQRLPQ 1414 (4334)
T ss_pred             cc---------------------------------------c---c-----cCCcccEEEEeecCCCHHHHHHHHHhCCC
Confidence            00                                       0   0     013899999999999999999988776 6


Q ss_pred             CceEEeeccCCCCceeeeecC-CcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhhh
Q 014951          316 APLTQGYGLTESCSGCFTSLA-DVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTE  394 (415)
Q Consensus       316 ~~~~~~yG~tE~~~~~~~~~~-~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~  394 (415)
                      .+++|.||+||++..++.... .......++|+|+++++++|+| +++..  ++.|+.|||+|+|+++++||+++|+.|.
T Consensus      1415 ~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~--vp~G~~GEL~i~G~~v~~GYl~~p~~t~ 1491 (4334)
T PRK05691       1415 VQLHNRYGPTETAINVTHWQCQAEDGERSPIGRPLGNVLCRVLD-AELNL--LPPGVAGELCIGGAGLARGYLGRPALTA 1491 (4334)
T ss_pred             cEEEeCCCcChheeeeeeeecccccCCCCcccceeCCCEEEEEC-CCCCC--CCCCCceEEEecCcccchhhcCCccccH
Confidence            799999999999876654332 2222347899999999999999 77654  4566999999999999999999999999


Q ss_pred             hhhc--------CCceecCceEEEcCCCC
Q 014951          395 EVIV--------DGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       395 ~~~~--------~g~~~TGDlg~~d~~G~  415 (415)
                      ++|.        .+||+|||+|++++||+
T Consensus      1492 ~~f~~~p~~~~~~r~yrTGDl~~~~~dG~ 1520 (4334)
T PRK05691       1492 ERFVPDPLGEDGARLYRTGDRARWNADGA 1520 (4334)
T ss_pred             hhCCCCCCCCCCceEEEccceEEECCCCC
Confidence            9882        24999999999999995

>PRK08162 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7.9e-43  Score=342.85  Aligned_cols=359  Identities=23%  Similarity=0.300  Sum_probs=256.5

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |.+.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++..+++.++++.+|++.+..+.+....... +.
T Consensus        60 L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~~  138 (545)
T PRK08162         60 LARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALL-PG  138 (545)
T ss_pred             HHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcEEeccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhC-CC
Confidence            34679999999999999999999999999999999999999999999999999999999999988776654432211 11


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCC-CCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCEL-PPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSV  159 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~  159 (415)
                      . ..+.++......   .........+++++.......... .+.+.+++++++|||||||.||+|+++|+++.......
T Consensus       139 ~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~  214 (545)
T PRK08162        139 P-KPLVIDVDDPEY---PGGRFIGALDYEAFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSN  214 (545)
T ss_pred             C-ceEEEecCcccc---ccCCCcccccHHHHhccCCccccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHH
Confidence            1 122222111000   000111223455555433211111 12345689999999999999999999999887665543


Q ss_pred             hhhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeC-CCHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHH
Q 014951          160 DQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWR-GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGIS  238 (415)
Q Consensus       160 ~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  238 (415)
                      ...+     .+..++++++.+|++|.+++...+...+.|+..++.. .++..+++.++++++|++.++|++++.+++...
T Consensus       215 ~~~~-----~~~~~~~~l~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~  289 (545)
T PRK08162        215 ILAW-----GMPKHPVYLWTLPMFHCNGWCFPWTVAARAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPA  289 (545)
T ss_pred             HHhc-----CCCCCCeeEeccCcHhhhhHHHHHHHHHHccEEEEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCcc
Confidence            3322     5677889999999999998876444433444444444 499999999999999999999999998865211


Q ss_pred             HhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCCce
Q 014951          239 NKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPL  318 (415)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~  318 (415)
                      ..                                     .       ..+ .+.+.++++|+++++++.+++++ ++.++
T Consensus       290 ~~-------------------------------------~-------~~~-~~~~~~~~~g~~~~~~~~~~~~~-~~~~~  323 (545)
T PRK08162        290 EW-------------------------------------R-------AGI-DHPVHAMVAGAAPPAAVIAKMEE-IGFDL  323 (545)
T ss_pred             cc-------------------------------------c-------cCC-ccceEEEECCCCCCHHHHHHHHH-hCCce
Confidence            00                                     0       000 13455678999999999998876 58999


Q ss_pred             EEeeccCCCCceeeeecCCc-c---------cccCcccccccC-eEEEEeecCCCCCCCCCCCCCCeEEEecCCcccccc
Q 014951          319 TQGYGLTESCSGCFTSLADV-F---------NMIGTVGVPMTT-VEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYY  387 (415)
Q Consensus       319 ~~~yG~tE~~~~~~~~~~~~-~---------~~~~~~G~~~~g-~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~  387 (415)
                      ++.||+||+++.+....... .         ....++|.+.+. ..++|+|.+++..++.+.++.|||+++|+.++.||+
T Consensus       324 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~v~g~~~~~gY~  403 (545)
T PRK08162        324 THVYGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYL  403 (545)
T ss_pred             eecccccccCcceeecccccccccCCccchhhccCCCCcccCCcceEEEEcCCCCcccCCCCCceeEEEEecCcchhhhc
Confidence            99999999865544332110 0         112456766553 457777723343333222347999999999999999


Q ss_pred             CCchhhhhhhcCCceecCceEEEcCCCC
Q 014951          388 KRPDLTEEVIVDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       388 ~~~~~~~~~~~~g~~~TGDlg~~d~~G~  415 (415)
                      ++++.+...|.+|||+|||+|++|+||+
T Consensus       404 ~~~~~~~~~~~~g~~~TGDl~~~d~dg~  431 (545)
T PRK08162        404 KNPKATEEAFAGGWFHTGDLAVLHPDGY  431 (545)
T ss_pred             CChhhhHHHhhCCCcccCceEEEcCCcc
Confidence            9999999999999999999999999985

>PRK09192 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.4e-43  Score=349.91  Aligned_cols=340  Identities=21%  Similarity=0.308  Sum_probs=255.3

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCC-------HHHHHHHHHhcCceEEEEcCCChhhhhhc
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG-------ANAVEFIINHAEVSIAFVQENKIPSILSC   73 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~-------~~~l~~~l~~~~~~~ii~~~~~~~~~~~~   73 (415)
                      |++.|+++||+|+++++|+++++++++||+++|++++|+++.++       .+++.++++.++++++|+++...+.+...
T Consensus        66 L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~  145 (579)
T PRK09192         66 LLALGLKPGDRVALIAETDGDFVEAFFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEA  145 (579)
T ss_pred             HHHhCCCCCCEEEEEcCCchhHHHHHHHHHHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHh
Confidence            45679999999999999999999999999999999999986543       58999999999999999998776655443


Q ss_pred             CccCCCCccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHH
Q 014951           74 LPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV  153 (415)
Q Consensus        74 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~  153 (415)
                      ....    ..+.                   ...+.++..........+...++++++++|||||||.||+|+++|++++
T Consensus       146 ~~~~----~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~  202 (579)
T PRK09192        146 THGN----PLLH-------------------VLSHAWFKALPEADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALM  202 (579)
T ss_pred             hccc----cccc-------------------eeehhhhcccCCCccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHH
Confidence            2111    0111                   1112222111111112234567899999999999999999999999999


Q ss_pred             HHhhhhhh-hhhhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC-----CHHHHHHHHHhhCCeEEEeC
Q 014951          154 AEVLSVDQ-MFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGV  226 (415)
Q Consensus       154 ~~~~~~~~-~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~-----~~~~~~~~i~~~~~t~~~~~  226 (415)
                      ........ .+     .+..+|+++.++|++|.+++.. ++.++..|+++++.+.     ++..+++.+.+++++.++..
T Consensus       203 ~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~  277 (579)
T PRK09192        203 ANLRAISHDGL-----KVRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSP  277 (579)
T ss_pred             HHHHHHHhhcc-----cCCCCCeEEEeCCCCCcchhHHHHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCC
Confidence            88876554 44     6788999999999999999875 5667888999877652     68899999999999987765


Q ss_pred             cHHHHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHH
Q 014951          227 PRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV  306 (415)
Q Consensus       227 P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~  306 (415)
                      |..+..+......                                  ......++        +++|.+++||+++++++
T Consensus       278 ~~~~~l~~~~~~~----------------------------------~~~~~~~l--------~~lr~~~~gG~~l~~~~  315 (579)
T PRK09192        278 PFGYELCARRVNS----------------------------------KDLAELDL--------SCWRVAGIGADMIRPDV  315 (579)
T ss_pred             cHHHHHHHHhhcc----------------------------------ccccccch--------hhhheeEecCccCCHHH
Confidence            5544443321100                                  00011112        37899999999999999


Q ss_pred             HHHHHHhcC------CceEEeeccCCCCceeeeecCCcc---------------------------cccCcccccccCeE
Q 014951          307 EEFLRVTSG------APLTQGYGLTESCSGCFTSLADVF---------------------------NMIGTVGVPMTTVE  353 (415)
Q Consensus       307 ~~~~~~~~~------~~~~~~yG~tE~~~~~~~~~~~~~---------------------------~~~~~~G~~~~g~~  353 (415)
                      .+.+.+.++      ..+++.||+||++..+........                           ...+++|+|+|+++
T Consensus       316 ~~~~~~~~~~~g~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~  395 (579)
T PRK09192        316 LHQFAEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHE  395 (579)
T ss_pred             HHHHHHHHHhcCCChhhcccccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcE
Confidence            998888763      358999999999876554322110                           11257899999999


Q ss_pred             EEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhhhhhh-cCCceecCceEEEcCCCC
Q 014951          354 ARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       354 ~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~~~~-~~g~~~TGDlg~~d~~G~  415 (415)
                      ++|+| +++..  ++.++.|||+++|+.++.|||++ +.+.+.+ .+|||+|||+|++ ++|+
T Consensus       396 v~i~d-~~~~~--~~~g~~Gel~i~g~~~~~gY~~~-~~~~~~~~~dgw~~TGDlg~~-~~G~  453 (579)
T PRK09192        396 IEIRN-EAGMP--LPERVVGHICVRGPSLMSGYFRD-EESQDVLAADGWLDTGDLGYL-LDGY  453 (579)
T ss_pred             EEEEC-CCCCC--CCCCCEEEEEecCCchhhhhcCC-ccccccccCCceeeccceeeE-ECCE
Confidence            99999 66654  44568999999999999999999 5666666 7899999999999 7774

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.6e-43  Score=347.95  Aligned_cols=349  Identities=17%  Similarity=0.216  Sum_probs=258.3

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |.+.|+++||+|+++++|+++++++++||+++|++++++++.++.+++.++++.++++++|++.+..+.+....... ..
T Consensus        79 L~~~g~~~gd~V~i~~~n~~~~v~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~-~~  157 (600)
T PRK08279         79 AAARGVGKGDVVALLMENRPEYLAAWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADL-AR  157 (600)
T ss_pred             HHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhh-cc
Confidence            45679999999999999999999999999999999999999999999999999999999999988776655433322 12


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCC--CCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTL--DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS  158 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~  158 (415)
                      ...++..+.....       ....+.++.+.......  .........+++++|+|||||||.||+|++||+++..++..
T Consensus       158 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~  230 (600)
T PRK08279        158 PPRLWVAGGDTLD-------DPEGYEDLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGG  230 (600)
T ss_pred             cceEEEecCcccc-------ccccHHHHhhhcccCCccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHH
Confidence            2233333221100       00011122222111111  11123346789999999999999999999999999999888


Q ss_pred             hhhhhhhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHHHHHH
Q 014951          159 VDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTG  236 (415)
Q Consensus       159 ~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~  236 (415)
                      ....+     .+.++|++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.++++++|++.++|++++.+++.
T Consensus       231 ~~~~~-----~l~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~  305 (600)
T PRK08279        231 FGGLL-----RLTPDDVLYCCLPLYHNTGGTVAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQ  305 (600)
T ss_pred             HHHhc-----CCCCCcEEEEecCchhhhhHHHHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhC
Confidence            76665     7889999999999999999886 4456888898888776 999999999999999999999999877541


Q ss_pred             HHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCC
Q 014951          237 ISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGA  316 (415)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~  316 (415)
                      ...                                     ...        ...++|.+  +|+++++++.+.+.+.++.
T Consensus       306 ~~~-------------------------------------~~~--------~~~~l~~~--~g~~l~~~~~~~~~~~~~~  338 (600)
T PRK08279        306 PPK-------------------------------------PTD--------RDHRLRLM--IGNGLRPDIWDEFQQRFGI  338 (600)
T ss_pred             CCC-------------------------------------ccc--------cCcceeEE--ecCCCCHHHHHHHHHHhCc
Confidence            000                                     000        00256654  4778999999999988886


Q ss_pred             -ceEEeeccCCCCceeeeecCCcccccCccccccc----CeEE---------EEeecCCCCCCCCCCCCCCeEE--EecC
Q 014951          317 -PLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMT----TVEA---------RLESVPEMGYDALSSVPRGEIC--LRGN  380 (415)
Q Consensus       317 -~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~----g~~~---------~i~~~~~~~~~~~~~~~~Gel~--v~~~  380 (415)
                       .+++.||+||++..+.. .   ....+++|.+.+    +..+         .+.+ .++....++.|+.|||+  +.++
T Consensus       339 ~~l~~~YG~tE~~~~~~~-~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~g~~Gel~~~i~~~  413 (600)
T PRK08279        339 PRILEFYAASEGNVGFIN-V---FNFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRD-ADGRCIKVKPGEVGLLIGRITDR  413 (600)
T ss_pred             ceeeeeecccccceeecc-c---CCCCcccccccccccccceeeeeccCcCceeeC-CCCccccCCCCCceeEEEEecCc
Confidence             59999999998754332 1   123367776655    3332         2233 33333456778999998  7799


Q ss_pred             CccccccCCchhhhhhh-------cCCceecCceEEEcCCCC
Q 014951          381 TLFSGYYKRPDLTEEVI-------VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       381 ~~~~gY~~~~~~~~~~~-------~~g~~~TGDlg~~d~~G~  415 (415)
                      .++.|| ++++.+.+.|       .++||+|||+|++|+||+
T Consensus       414 ~~~~GY-~~~~~t~~~~~~~~~~~~~~~~~TGDlg~~~~dG~  454 (600)
T PRK08279        414 GPFDGY-TDPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGH  454 (600)
T ss_pred             cccccc-CCchhhHHHHhhcccCCCCceEeecceEEEcCCcc
Confidence            999999 8888888775       257999999999999985

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=100.00  E-value=9.7e-43  Score=339.23  Aligned_cols=334  Identities=21%  Similarity=0.248  Sum_probs=263.3

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |.+.|+++||+|+++++|+.+++++++||+++|++++|+++.++.+++..+++..+++++|++++.....        ..
T Consensus        44 l~~~g~~~~~~v~~~~~~~~~~~~~~~a~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~  115 (503)
T PRK04813         44 IDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEELPLEI--------LG  115 (503)
T ss_pred             HHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEecCCCCChHHHHHHHHHhcCCCEEEecccccccc--------cC
Confidence            3567999999999999999999999999999999999999999999999999999999999987651100        00


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD  160 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~  160 (415)
                      . .++..+                  ++.+...............++++++++|||||||.||+|.++|.++........
T Consensus       116 ~-~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~  176 (503)
T PRK04813        116 I-PVITLD------------------ELKDIFATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWML  176 (503)
T ss_pred             C-cEEehH------------------HhhhhhhccccccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHH
Confidence            0 111110                  111111111111112345678899999999999999999999999998877765


Q ss_pred             hhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC----CHHHHHHHHHhhCCeEEEeCcHHHHHHHHH
Q 014951          161 QMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTG  236 (415)
Q Consensus       161 ~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~  236 (415)
                      ..+     .+..+++++...|++|..+...++.++..|+++++.+.    ++..+++.++++++|++.++|++++.+...
T Consensus       177 ~~~-----~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~  251 (503)
T PRK04813        177 EDF-----ALPEGPQFLNQAPYSFDLSVMDLYPTLASGGTLVALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLD  251 (503)
T ss_pred             HHc-----CCCcCceeeecCCcchhHhHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHh
Confidence            554     67889999999999999998878889999999998764    789999999999999999999999876431


Q ss_pred             HHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhc-C
Q 014951          237 ISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-G  315 (415)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~-~  315 (415)
                      ..                                     ....+        .+++|.++++|+++++.+.+++.+.+ +
T Consensus       252 ~~-------------------------------------~~~~~--------~~~l~~i~~~G~~l~~~~~~~~~~~~~~  286 (503)
T PRK04813        252 PS-------------------------------------FNEEH--------LPNLTHFLFCGEELPHKTAKKLLERFPS  286 (503)
T ss_pred             hc-------------------------------------cCccc--------CCCceEEEEecCcCCHHHHHHHHHHCCC
Confidence            10                                     00000        13799999999999999999999888 6


Q ss_pred             CceEEeeccCCCCceeeeecCCc----ccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCch
Q 014951          316 APLTQGYGLTESCSGCFTSLADV----FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPD  391 (415)
Q Consensus       316 ~~~~~~yG~tE~~~~~~~~~~~~----~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~  391 (415)
                      ..+++.||+||++..+.......    .....++|++.++++++|++ +++..  ++.++.|||+++|+.++.||+++++
T Consensus       287 ~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d-~~~~~--~~~g~~Gel~v~~~~~~~gy~~~~~  363 (503)
T PRK04813        287 ATIYNTYGPTEATVAVTSIEITDEMLDQYKRLPIGYAKPDSPLLIID-EEGTK--LPDGEQGEIVISGPSVSKGYLNNPE  363 (503)
T ss_pred             ceEEeCcccchheeEEEEEEecccccccCCCCcccccCCCCEEEEEC-CCCCC--CCCCCceEEEEeccccccccCCChh
Confidence            78999999999976554332211    12236799999999999999 66654  4566899999999999999999999


Q ss_pred             hhhhhhc--CC--ceecCceEEEcCCCC
Q 014951          392 LTEEVIV--DG--WFHTGDIGEWQPMEL  415 (415)
Q Consensus       392 ~~~~~~~--~g--~~~TGDlg~~d~~G~  415 (415)
                      .+...|.  +|  ||+|||+|++ ++|+
T Consensus       364 ~~~~~~~~~~g~~~~~tGD~~~~-~~g~  390 (503)
T PRK04813        364 KTAEAFFTFDGQPAYHTGDAGYL-EDGL  390 (503)
T ss_pred             HhHHhhccCCCceeEECCceEEe-eCCe
Confidence            9998872  44  9999999999 7774

>PRK05850 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.6e-43  Score=347.48  Aligned_cols=345  Identities=19%  Similarity=0.278  Sum_probs=247.2

Q ss_pred             ccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCC---CCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccC-
Q 014951            2 RSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYD---TLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRC-   77 (415)
Q Consensus         2 ~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~---~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-   77 (415)
                      .+.| ++||+|+++++|+++++++++||+++|++++|+++   ..+.+++.+++++++++++|++++..+.+....... 
T Consensus        53 ~~~g-~~gd~V~l~~~n~~~~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~  131 (578)
T PRK05850         53 RRHG-STGDRAVILAPQGLEYIVAFLGALQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQP  131 (578)
T ss_pred             HHhC-CCCCEEEEEcCCcccHHHHHHHHHHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcc
Confidence            4567 68999999999999999999999999999999997   557899999999999999999987666554321110 


Q ss_pred             CCCccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhh
Q 014951           78 CLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVL  157 (415)
Q Consensus        78 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~  157 (415)
                      ......++..+..                   ++....  ........++++++++|||||||.||+|.++|++++.++.
T Consensus       132 ~~~~~~~~~~~~~-------------------~~~~~~--~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~  190 (578)
T PRK05850        132 GQSAPPVIEVDLL-------------------DLDSPR--GSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFE  190 (578)
T ss_pred             cccccceEeeccc-------------------ccccCC--ccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHH
Confidence            0011112221110                   000000  0111234568999999999999999999999999988776


Q ss_pred             hhhhhh-hhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC-----CHHHHHHHHHhhCCeEEEeCcHHH
Q 014951          158 SVDQMF-VVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVY  230 (415)
Q Consensus       158 ~~~~~~-~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~  230 (415)
                      .....+ .........++++++++|++|..++.. ++.+++.|+++++.+.     ++..+++.+++++++++ .+|.++
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~  269 (578)
T PRK05850        191 QLMSDYFGDTGGVPPPDTTVVSWLPFYHDMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFA  269 (578)
T ss_pred             HHHHhhccccccCCCCcceEEEECCCCCCchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHH
Confidence            543321 111112456889999999999999875 7888999999998863     68999999999999865 566554


Q ss_pred             HHHHH-HHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHH
Q 014951          231 DRIYT-GISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEF  309 (415)
Q Consensus       231 ~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~  309 (415)
                      ..++. ....                                  ......++        +++|.+++||+++++++.++
T Consensus       270 ~~~~~~~~~~----------------------------------~~~~~~~~--------~~lr~~~~gg~~~~~~~~~~  307 (578)
T PRK05850        270 FELAVRKTSD----------------------------------DDMAGLDL--------GGVLGIISGSERVHPATLKR  307 (578)
T ss_pred             HHHHHHhcch----------------------------------hhhcCcch--------hhheeEEECcCCCCHHHHHH
Confidence            33321 1000                                  00000111        37899999999999999999


Q ss_pred             HHHhcC------CceEEeeccCCCCceeeeecCCcc------------------------cccCcccccccCeEEEEeec
Q 014951          310 LRVTSG------APLTQGYGLTESCSGCFTSLADVF------------------------NMIGTVGVPMTTVEARLESV  359 (415)
Q Consensus       310 ~~~~~~------~~~~~~yG~tE~~~~~~~~~~~~~------------------------~~~~~~G~~~~g~~~~i~~~  359 (415)
                      |.+.++      ..+++.||+||++..+........                        ....++|.|. +.+++|+| 
T Consensus       308 ~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~~~~ivd-  385 (578)
T PRK05850        308 FADRFAPFNLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-SPTVRIVD-  385 (578)
T ss_pred             HHHHHHhcCcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-CCEEEEEc-
Confidence            888763      368999999998765443221100                        0012345553 57899998 


Q ss_pred             CCCCCCCCCCCCCCeEEEecCCccccccCCchhhhhhhc------------CCceecCceEEEcCCCC
Q 014951          360 PEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV------------DGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       360 ~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~~~~~------------~g~~~TGDlg~~d~~G~  415 (415)
                      +++. .+++.|+.|||+++|+.++.||+++++.+.+.|.            +|||+|||+|++| ||+
T Consensus       386 ~~~~-~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G~  451 (578)
T PRK05850        386 PDTC-IECPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EGE  451 (578)
T ss_pred             CCCC-cCCCCCCEEEEEEecCcccccccCChhhhHHHhhcccccccccCCCCCeeeccceeeEE-CCE
Confidence            5433 4466789999999999999999999999998883            5799999999998 774

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.5e-42  Score=338.18  Aligned_cols=339  Identities=20%  Similarity=0.245  Sum_probs=255.4

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHH-------HHHHHhcCceEEEEcCCChhhhhhc
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAV-------EFIINHAEVSIAFVQENKIPSILSC   73 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l-------~~~l~~~~~~~ii~~~~~~~~~~~~   73 (415)
                      |.+.|+++||+|+++++|+++++++++||+++|++++++++..+.+++       ..+++.++++.+|+++.....+...
T Consensus        46 L~~~g~~~gd~V~l~~~~~~~~~~~~la~~~~g~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  125 (545)
T PRK07768         46 LAAAGVGPGDAVAVLAGAPVEIAPTAQGLWMRGASLTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVL  125 (545)
T ss_pred             HHHhCCCCCCEEEEECCCchHHHHHHHHHHHcCccccccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhhh
Confidence            456899999999999999999999999999999999999998886554       4567778999999987654332211


Q ss_pred             CccCCCCccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHH
Q 014951           74 LPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV  153 (415)
Q Consensus        74 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~  153 (415)
                      ...                         ......++++.....  .......++++++++|||||||.||+|+++|+++.
T Consensus       126 ~~~-------------------------~~~~~~~~~l~~~~~--~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~  178 (545)
T PRK07768        126 EEK-------------------------GIRVLTVADLLAADP--IDPVETGEDDLALMQLTSGSTGSPKAVQITHGNLY  178 (545)
T ss_pred             ccc-------------------------CCceeehhhhcccCC--CCcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHH
Confidence            100                         011223333332211  12234467999999999999999999999999999


Q ss_pred             HHhhhhhhhhhhccccCCCC-CEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC-----CHHHHHHHHHhhCCeEEEeC
Q 014951          154 AEVLSVDQMFVVTGKVCSEE-DTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGV  226 (415)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~-d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~-----~~~~~~~~i~~~~~t~~~~~  226 (415)
                      ..+......+     .+..+ |++++++|++|..++.. ++.++..|+++++.+.     ++..+++.+++++++++..+
T Consensus       179 ~~~~~~~~~~-----~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  253 (545)
T PRK07768        179 ANAEAMFVAA-----EFDVETDVMVSWLPLFHDMGMVGFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAP  253 (545)
T ss_pred             HHHHHHHHhc-----CCCCCCceeEEeCCCccchHHHHHHHHHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECc
Confidence            8877665554     55555 89999999999999875 5567999999988753     67888999999999998777


Q ss_pred             cHHHHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHH
Q 014951          227 PRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV  306 (415)
Q Consensus       227 P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~  306 (415)
                      |..+..+...+......                                 ...++        +++|.++++|+++++++
T Consensus       254 ~~~~~~l~~~~~~~~~~---------------------------------~~~~~--------~~lr~~~~~g~~~~~~~  292 (545)
T PRK07768        254 NFAYALLARRLRRQAKP---------------------------------GAFDL--------SSLRFALNGAEPIDPAD  292 (545)
T ss_pred             hHHHHHHHHHHhccccc---------------------------------cCCCc--------hheeeEEeccCCCCHHH
Confidence            77776654422111000                                 00111        37999999999999999


Q ss_pred             HHHHHHh---cCC---ceEEeeccCCCCceeeeecCCc-------------------------ccccCcccccccCeEEE
Q 014951          307 EEFLRVT---SGA---PLTQGYGLTESCSGCFTSLADV-------------------------FNMIGTVGVPMTTVEAR  355 (415)
Q Consensus       307 ~~~~~~~---~~~---~~~~~yG~tE~~~~~~~~~~~~-------------------------~~~~~~~G~~~~g~~~~  355 (415)
                      .+++.+.   ++.   .+++.||+||++..+.......                         ....+++|+|+++++++
T Consensus       293 ~~~~~~~~~~~g~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~  372 (545)
T PRK07768        293 VEDLLDAGARFGLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVR  372 (545)
T ss_pred             HHHHHHHHHhcCCCcccccccccccccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEE
Confidence            9988764   554   4999999999987654432211                         11236899999999999


Q ss_pred             EeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhhhhhhcCCceecCceEEEcCCCC
Q 014951          356 LESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       356 i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~~~~~~g~~~TGDlg~~d~~G~  415 (415)
                      |++ +++..  ++.++.|||+++|+.++.||++++......+.+|||+|||+|++|+||+
T Consensus       373 i~~-~~~~~--~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~  429 (545)
T PRK07768        373 VVD-EDGQV--LPPRGVGVIELRGESVTPGYLTMDGFIPAQDADGWLDTGDLGYLTEEGE  429 (545)
T ss_pred             EEC-CCCCC--CCCCCEEEEEEccCcccccccCCCCCcccccCCCeeeccceEEEecCCE
Confidence            999 77654  4567999999999999999998765555445789999999999999884

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=6.8e-43  Score=328.29  Aligned_cols=353  Identities=20%  Similarity=0.257  Sum_probs=278.2

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhh--------
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILS--------   72 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~--------   72 (415)
                      |+..|+++||+|++++|+.+|++++++||+++|++..++...+++.++..+++.+++|++|+.+........        
T Consensus       113 l~~~g~~kGD~V~~~mPm~~e~~ia~lA~~r~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~  192 (626)
T KOG1175|consen  113 LRKCGLKKGDTVAIYMPMIPEAVIAMLACARIGAIHSSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVL  192 (626)
T ss_pred             HHhcCCCCCcEEEEeccCChHHHHHHHHHhhcCeEEEEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHH
Confidence            346799999999999999999999999999999999999999999999999999999999998854322111        


Q ss_pred             -cCccC---CCCccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEee
Q 014951           73 -CLPRC---CLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLT  148 (415)
Q Consensus        73 -~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t  148 (415)
                       +....   .......+.+...            .....|+++........+..+.+.+|+.+|+|||||||.||++.++
T Consensus       193 ~a~~~~~~~~~~~~~~~~~~~~------------~~d~~~~~~~~~a~~~~~~~~~~~edpl~IlfTSGtTg~PK~v~ht  260 (626)
T KOG1175|consen  193 EALLLVSDKSRPVWLDLIVSRR------------NRDLFWSLELKKASPEHPCVPVKAEDPLFILFTSGTTGKPKGVIHT  260 (626)
T ss_pred             HHhhcccccccccceeeEEecc------------cccccHHHHhhhcCCCCCceecCccCceEEEecCCCCCCCCceeec
Confidence             11100   0010111111111            0123455554444334446778899999999999999999999999


Q ss_pred             cHHHHHHh-hhhhhhhhhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC---CHHHHHHHHHhhCCeEE
Q 014951          149 NQAIVAEV-LSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG---DVRYLMEDIQELKPTMF  223 (415)
Q Consensus       149 h~~l~~~~-~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~---~~~~~~~~i~~~~~t~~  223 (415)
                      +...+... ......+     ++++.|++++...+.|+.+.++ .+.+|+.|+++++.+.   ++..+++.+.++++|++
T Consensus       261 ~~g~ll~~~~~~~~~~-----d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l  335 (626)
T KOG1175|consen  261 TGGYLLGAALTSRYHF-----DLQPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVL  335 (626)
T ss_pred             cCcchHHHhhhcceec-----cCCCcceEEEecccCeeeccchhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEE
Confidence            87655444 3433434     8899999999999999999887 6679999999999865   88999999999999999


Q ss_pred             EeCcHHHHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCC
Q 014951          224 SGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLP  303 (415)
Q Consensus       224 ~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~  303 (415)
                      ++.|+.++.+........                                   ....+        ++||.+.++|||++
T Consensus       336 ~t~pt~~r~l~~~~~~~~-----------------------------------~~~~~--------~sLk~~~S~Gepi~  372 (626)
T KOG1175|consen  336 YTAPTAYRLLRRLGQEDV-----------------------------------TSYSL--------KSLRTCGSVGEPIN  372 (626)
T ss_pred             EeccHHHHHHHHhccccc-----------------------------------ccccc--------ceEEEEeecCccCC
Confidence            999999997654111110                                   00000        27999999999999


Q ss_pred             HHHHHHHHHhcCC-ceEEeeccCCCCceeeeecCCc-ccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecC-
Q 014951          304 IHVEEFLRVTSGA-PLTQGYGLTESCSGCFTSLADV-FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGN-  380 (415)
Q Consensus       304 ~~~~~~~~~~~~~-~~~~~yG~tE~~~~~~~~~~~~-~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~-  380 (415)
                      ++..+++.+.++. +|++.||+||+|..+....+.. ..++++.+.|.+|..+.|.| +++...+... +.|||+++.+ 
T Consensus       373 ~~~~ew~~~~~~~~pv~e~~~qtEtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~d-e~g~~~~~~~-~~G~l~~~~~~  450 (626)
T KOG1175|consen  373 PEAWEWWKRVTGLDPIYETYGQTETGGICITPKPGKLPIKPGSAGKPFPGYDVQILD-ENGNELPPST-GNGELRLKPPW  450 (626)
T ss_pred             cchHHHHHHhcCccchhhceeeeccCceeeeccCCCCCcCccccCCCCCCcceEEEC-CCCCCcCCCC-ceeEEEEeCCC
Confidence            9999999999988 6999999999999988877766 55669999999999999999 6776555544 8999999874 


Q ss_pred             --CccccccCCchhhhhhh-c--CCceecCceEEEcCCCC
Q 014951          381 --TLFSGYYKRPDLTEEVI-V--DGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       381 --~~~~gY~~~~~~~~~~~-~--~g~~~TGDlg~~d~~G~  415 (415)
                        +.+++||+|++....++ .  .|||.|||.|++|+|||
T Consensus       451 P~~~~r~~~~n~erf~~~yf~k~pg~y~tGD~~~rd~dGY  490 (626)
T KOG1175|consen  451 PPGMFRTLWGNHERFRAAYFKKFPGYYFTGDGGRRDEDGY  490 (626)
T ss_pred             CccccccccCCHHHhhhhhcccCCceEEecCceEEcCCce
Confidence              77999999999655554 3  78999999999999997

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=1.9e-42  Score=332.83  Aligned_cols=302  Identities=29%  Similarity=0.381  Sum_probs=245.7

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |.+.|+++||+|+++++|+++++++++||+++|++++|+++..+.+++..+++.+++++++++++... +.. .      
T Consensus        45 L~~~g~~~~~~v~l~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~-~------  116 (458)
T PRK09029         45 FAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVLPLNPQLPQPLLEELLPSLTLDFALVLEGENT-FSA-L------  116 (458)
T ss_pred             HHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEeecCCCCCHHHHHHHHHhcCCCEEEEcCcccc-hhh-c------
Confidence            35679999999999999999999999999999999999999999999999999999999998876422 100 0      


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD  160 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~  160 (415)
                       ....                      ...     ..........++++++++|||||||.||+|.+||+++...+....
T Consensus       117 -~~~~----------------------~~~-----~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~  168 (458)
T PRK09029        117 -TSLH----------------------LQL-----VEGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVL  168 (458)
T ss_pred             -cccc----------------------ccc-----ccccCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHh
Confidence             0000                      000     001112344678999999999999999999999999999888766


Q ss_pred             hhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCCCHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHHHh
Q 014951          161 QMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNK  240 (415)
Q Consensus       161 ~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~  240 (415)
                      ..+     ....+|+++..+|++|.+++...+.++..|+++++.+.  ..+++.++  ++|.+..+|+++..+...... 
T Consensus       169 ~~~-----~~~~~~~~l~~~p~~h~~g~~~~~~~l~~G~~v~~~~~--~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~-  238 (458)
T PRK09029        169 SLM-----PFTAQDSWLLSLPLFHVSGQGIVWRWLYAGATLVVRDK--QPLEQALA--GCTHASLVPTQLWRLLDNRSE-  238 (458)
T ss_pred             hcC-----CCCccceEEEecCcHhhhhhHHHHHHHhCCceEEeCCh--HHHHHHHh--hceeeecChHHHHHHHhcccc-
Confidence            555     67789999999999999998777788999999998764  55667763  799999999999887541100 


Q ss_pred             hhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCCceEE
Q 014951          241 ISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQ  320 (415)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~~~  320 (415)
                                                                      ..++|.+++||+++++.+.+++.+ ++.++++
T Consensus       239 ------------------------------------------------~~~l~~i~~gG~~~~~~~~~~~~~-~g~~~~~  269 (458)
T PRK09029        239 ------------------------------------------------PLSLKAVLLGGAAIPVELTEQAEQ-QGIRCWC  269 (458)
T ss_pred             ------------------------------------------------CCcceEEEECCCCCCHHHHHHHHH-cCCcEec
Confidence                                                            026899999999999999999886 5999999


Q ss_pred             eeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhhhhhhcCC
Q 014951          321 GYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDG  400 (415)
Q Consensus       321 ~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~~~~~~g  400 (415)
                      .||+||++........+   ...++|+|+++++++|++              |||+++|+.++.||+++++.+.....+|
T Consensus       270 ~YG~tE~~~~~~~~~~~---~~~~~G~~~~~~~~~i~~--------------gel~v~g~~~~~gY~~~~~~~~~~~~~~  332 (458)
T PRK09029        270 GYGLTEMASTVCAKRAD---GLAGVGSPLPGREVKLVD--------------GEIWLRGASLALGYWRQGQLVPLVNDEG  332 (458)
T ss_pred             cccccccCcceeccCCC---CCCCCCCCCCCCEEEEeC--------------CEEEEecCceeeeeecCccccccccCCC
Confidence            99999998755433322   125699999999999977              8999999999999999998887666789


Q ss_pred             ceecCceEEEcCCCC
Q 014951          401 WFHTGDIGEWQPMEL  415 (415)
Q Consensus       401 ~~~TGDlg~~d~~G~  415 (415)
                      ||+|||+|++| ||+
T Consensus       333 ~~~TGD~~~~~-~g~  346 (458)
T PRK09029        333 WFATRDRGEWQ-NGE  346 (458)
T ss_pred             ccCCCCcEEEe-CCE
Confidence            99999999999 774

>PRK07798 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.9e-41  Score=330.38  Aligned_cols=356  Identities=21%  Similarity=0.239  Sum_probs=265.2

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |.+.|+++||+|+++++|+++++++++||+++|++++++++.++.+++.+++++++++++|++.+....+.+.... .+.
T Consensus        45 L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~  123 (533)
T PRK07798         45 LIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPR-LPK  123 (533)
T ss_pred             HHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCeEEEecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhcc-CCC
Confidence            3567999999999999999999999999999999999999999999999999999999999998776666554332 244


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD  160 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~  160 (415)
                      .+.++.++......      .......++++........... ...++.++++|||||||.||+|+++|.++........
T Consensus       124 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~  196 (533)
T PRK07798        124 LRTLVVVEDGSGND------LLPGAVDYEDALAAGSPERDFG-ERSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGR  196 (533)
T ss_pred             ccEEEEecCCcccc------cCCccccHHHHHhccCCcCCCC-CCCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhh
Confidence            55666665432110      0012345666654432111111 2334567999999999999999999999886554322


Q ss_pred             hhhh----hccccC------CCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeC--C-CHHHHHHHHHhhCCeEEEeCc
Q 014951          161 QMFV----VTGKVC------SEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWR--G-DVRYLMEDIQELKPTMFSGVP  227 (415)
Q Consensus       161 ~~~~----~~~~~~------~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~--~-~~~~~~~~i~~~~~t~~~~~P  227 (415)
                      ..+.    .....+      ..+++++..+|++|..++...+.+++.|+++++.+  . ++..+++.++++++|.+.++|
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~  276 (533)
T PRK07798        197 DFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGAGQWAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVG  276 (533)
T ss_pred             hhhcccchhhhhhhcccccCCCCceEEEecchhhhhhHHHHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEech
Confidence            1110    001111      56789999999999999988889999999999998  4 899999999999999999998


Q ss_pred             HHHHH-HHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHH
Q 014951          228 RVYDR-IYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV  306 (415)
Q Consensus       228 ~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~  306 (415)
                      ..+.. +.+.+. .                                           ......+++|.+++||+++++++
T Consensus       277 ~~~~~~l~~~~~-~-------------------------------------------~~~~~~~~l~~i~~gG~~~~~~~  312 (533)
T PRK07798        277 DAMARPLLDALE-A-------------------------------------------RGPYDLSSLFAIASGGALFSPSV  312 (533)
T ss_pred             HHHHHHHHHHhc-c-------------------------------------------cccCCCCceEEEEECCCCCCHHH
Confidence            76643 222111 0                                           00001148999999999999999


Q ss_pred             HHHHHHhc-CCceEEeeccCCCCceeeeecCCcccccCccc--ccccCeEEEEeecCCCCCCCCCCCCC--CeEEEecCC
Q 014951          307 EEFLRVTS-GAPLTQGYGLTESCSGCFTSLADVFNMIGTVG--VPMTTVEARLESVPEMGYDALSSVPR--GEICLRGNT  381 (415)
Q Consensus       307 ~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G--~~~~g~~~~i~~~~~~~~~~~~~~~~--Gel~v~~~~  381 (415)
                      .+++++.+ +..+++.||+||++...........   ...|  ++.++..++|++ +++...+  .|+.  |+|+ +++.
T Consensus       313 ~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~---~~~g~~~~~~~~~~~i~~-~~~~~~~--~g~~~~g~l~-~~~~  385 (533)
T PRK07798        313 KEALLELLPNVVLTDSIGSSETGFGGSGTVAKGA---VHTGGPRFTIGPRTVVLD-EDGNPVE--PGSGEIGWIA-RRGH  385 (533)
T ss_pred             HHHHHHHcCCCeEEeeecccccccccccCCCCCC---ccCCCCccCCCceEEEEC-CCCCCCC--CCCCCeeEEE-eecC
Confidence            99999888 7899999999998655443322111   2333  788999999999 7776444  4455  6665 5668


Q ss_pred             ccccccCCchhhhhhhc----CCceecCceEEEcCCCC
Q 014951          382 LFSGYYKRPDLTEEVIV----DGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       382 ~~~gY~~~~~~~~~~~~----~g~~~TGDlg~~d~~G~  415 (415)
                      ++.||+++++.+.+.|.    ++||+|||+|++|+||+
T Consensus       386 ~~~gy~~~~~~t~~~f~~~~~~~~~~TGD~~~~~~~g~  423 (533)
T PRK07798        386 IPLGYYKDPEKTAETFPTIDGVRYAIPGDRARVEADGT  423 (533)
T ss_pred             ccccccCChhhhHHhhccCCCCceEEcCcEEEEcCCCc
Confidence            99999999999998883    35999999999999985

>PTZ00297 pantothenate kinase; Provisional

Probab=100.00  E-value=6.2e-41  Score=346.68  Aligned_cols=376  Identities=19%  Similarity=0.275  Sum_probs=288.0

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |.+.||++||+|+|+++|++||+++++||+++|++++|+++  +.+++.+++++++++++|++.+....+.....   ..
T Consensus       474 L~~lGV~~GDrVaIls~N~~Ewvia~lA~~~~GaV~VPly~--t~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~---~~  548 (1452)
T PTZ00297        474 LLALGVRPGDVIGVDCEASRNIVILEVACALYGFTTLPLVG--KGSTMRTLIDEHKIKVVFADRNSVAAILTCRS---RK  548 (1452)
T ss_pred             HHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeCCC--CHHHHHHHHHhcCCcEEEEchhHHHHHHhhcc---cC
Confidence            46789999999999999999999999999999999999975  46799999999999999999887777665432   36


Q ss_pred             ccEEEEecCCCchhh-HHhhhcCceeecHHHHHhcCCC--CCCCCCCCCCCeEEEEe---cCCCCCCCceEEeecHHHHH
Q 014951           81 LKTIVSFANVSSSQK-KEAEELGVSCFSWEEFLQLGTL--DCELPPKKKTNISTIMY---TSGTTGEPKGVVLTNQAIVA  154 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~---TSGtTG~pK~v~~th~~l~~  154 (415)
                      ++.+++++....... ......+.....|+++...+..  ........++|++.|+|   ||||||.||||++||+|++.
T Consensus       549 Lr~IIv~d~~~~~~~~~~~~~~~i~~~s~~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla  628 (1452)
T PTZ00297        549 LETVVYTHSFYDEDDHAVARDLNITLIPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLR  628 (1452)
T ss_pred             CcEEEEECCCcccccccccccCCcceeeHHHHHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHH
Confidence            788998864211000 0000112345678888876521  11123347789999996   99999999999999999999


Q ss_pred             HhhhhhhhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCCCHHHHHHHHHhhCCeEEEeCcHHHHHHH
Q 014951          155 EVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIY  234 (415)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~  234 (415)
                      ++.........  .....+|++++++|++|+++....+.+++.|+++.+.  ++..+++.|++++||++.++|++++.+.
T Consensus       629 ~~~~~~~~~~~--~~~~~~D~~Ls~LPLaHI~er~~~~~~l~~G~~I~~~--d~~~lledL~~~rPTv~~~VPrv~ekI~  704 (1452)
T PTZ00297        629 DISTLVMTGVL--PSSFKKHLMVHFTPFAMLFNRVFVLGLFAHGSAVATV--DAAHLQRAFVKFQPTILVAAPSLFSTSR  704 (1452)
T ss_pred             HHHHHhhhccc--cCCCCCCEEEEechHHHHHHHHHHHHHHHcCCEEEeC--CHHHHHHHHHHHCCEEEEecHHHHHHHH
Confidence            98875432100  1345789999999999999977777889999998754  7899999999999999999999999999


Q ss_pred             HHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecC--CCCHHHHHHHHH
Q 014951          235 TGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAA--PLPIHVEEFLRV  312 (415)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~--~~~~~~~~~~~~  312 (415)
                      +.+..+........+++|+++++.+....+.+.   .....++.+.++++|..+|.++|.+++||+  +++..+.     
T Consensus       705 ~~i~~~~~~~~~~~~~lf~~A~~~k~~~~~~g~---~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~-----  776 (1452)
T PTZ00297        705 LQLSRANERYSAVYSWLFERAFQLRSRLINIHR---RDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLL-----  776 (1452)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCC---CCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHh-----
Confidence            988888887788899999999887765444332   234477889999999999999999999984  4443332     


Q ss_pred             hcCCceEEeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchh
Q 014951          313 TSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDL  392 (415)
Q Consensus       313 ~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~  392 (415)
                       .++++..+||+||+.   +.+.+...   ...|.|+||+++||.+.++.+..    ...|||+++       |+++|+.
T Consensus       777 -~~i~i~~g~glTE~~---~~~~~~~~---~~~G~PlpgvEvKI~~~~E~~~~----~~~GEIlvr-------~~kdpe~  838 (1452)
T PTZ00297        777 -EHISVCYVPCLREVF---FLPSEGVF---CVDGTPAPSLQVDLEPFDEPSDG----AGIGQLVLA-------KKGEPRR  838 (1452)
T ss_pred             -CCceEEEecceEEee---eecCCCCc---ccCCeecCceEEEEcccccccCC----CCCCeEEEE-------ECCChHH
Confidence             267799999999942   33333322   22399999999999874443321    246999995       4589999


Q ss_pred             hhhhhcCCceecCceEEEcC
Q 014951          393 TEEVIVDGWFHTGDIGEWQP  412 (415)
Q Consensus       393 ~~~~~~~g~~~TGDlg~~d~  412 (415)
                      |.+. .+||+..|.+--+|.
T Consensus       839 T~e~-~~gW~~dG~L~IidR  857 (1452)
T PTZ00297        839 TLPI-AAQWKRDRTLRLLGP  857 (1452)
T ss_pred             HHHh-hCcCccCCeEEEEec
Confidence            9874 479999888776553

>PRK08308 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.9e-39  Score=307.66  Aligned_cols=279  Identities=18%  Similarity=0.204  Sum_probs=232.3

Q ss_pred             cCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCcc
Q 014951            3 SRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLK   82 (415)
Q Consensus         3 ~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~   82 (415)
                      ..|+++|++|+++++|+++++++++|++++|++++||++..+.+++..++++++++.+++++....     ..       
T Consensus        26 ~~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~-------   93 (414)
T PRK08308         26 QFQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAGCHGLLYGESDFT-----KL-------   93 (414)
T ss_pred             HcCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCCCCEEEecCcccc-----cc-------
Confidence            357999999999999999999999999999999999999999999999999999999998763100     00       


Q ss_pred             EEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhhhh
Q 014951           83 TIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQM  162 (415)
Q Consensus        83 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~  162 (415)
                                                           ......++++++++|||||||.||+|.+||+++..++..+...
T Consensus        94 -------------------------------------~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~  136 (414)
T PRK08308         94 -------------------------------------EAVNYLAEEPSLLQYSSGTTGEPKLIRRSWTEIDREIEAYNEA  136 (414)
T ss_pred             -------------------------------------cCCCCCCCCceEEEECCCCCCCCcEEEEehHhHHHHHHHHHHh
Confidence                                                 0012346789999999999999999999999999888776665


Q ss_pred             hhhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHHHh
Q 014951          163 FVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNK  240 (415)
Q Consensus       163 ~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~  240 (415)
                      +     ....+|+.+..+|++|.+++.. ++.++..|+++++.+. ++..+++.++++++|.++++|+++..+.+...  
T Consensus       137 ~-----~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~--  209 (414)
T PRK08308        137 L-----NCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNILRNTPQHILYAVPLMLHILGRLLP--  209 (414)
T ss_pred             h-----CCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHHHHHhCCeEEEcCHHHHHHHHhcCC--
Confidence            5     6678899999999999999864 7788999999988876 99999999999999999999999988754110  


Q ss_pred             hhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCCceEE
Q 014951          241 ISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQ  320 (415)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~~~  320 (415)
                                                          .           ..+++.++++|+++++++.+.+++. +.++++
T Consensus       210 ------------------------------------~-----------~~~l~~~~~~G~~l~~~~~~~~~~~-~~~~~~  241 (414)
T PRK08308        210 ------------------------------------G-----------TFQFHAVMTSGTPLPEAWFYKLRER-TTYMMQ  241 (414)
T ss_pred             ------------------------------------c-----------cccccEEEEccCCCCHHHHHHHHHh-CChhhh
Confidence                                                0           0257889999999999999998875 678999


Q ss_pred             eeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhhhhhhcCC
Q 014951          321 GYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDG  400 (415)
Q Consensus       321 ~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~~~~~~g  400 (415)
                      .||+||++.+....  + ....+++|+|+|++++++.+ ++        ++.|||++++.                  ++
T Consensus       242 ~YG~tE~~~~~~~~--~-~~~~~~~G~p~~~~~~~~~~-~~--------~~~gel~v~~~------------------~~  291 (414)
T PRK08308        242 QYGCSEAGCVSICP--D-MKSHLDLGNPLPHVSVSAGS-DE--------NAPEEIVVKMG------------------DK  291 (414)
T ss_pred             ccCccccCCeeecC--C-CCCCCccCccCCCeEEEEec-CC--------CCCceEEEEcC------------------Cc
Confidence            99999998644322  1 12347899999999999876 32        36799999752                  57


Q ss_pred             ceecCceEEEcCCCC
Q 014951          401 WFHTGDIGEWQPMEL  415 (415)
Q Consensus       401 ~~~TGDlg~~d~~G~  415 (415)
                      ||+|||+|++|+||+
T Consensus       292 ~~~TGDl~~~~~dg~  306 (414)
T PRK08308        292 EIFTKDLGYKSERGT  306 (414)
T ss_pred             eEECCceEEECCCcc
Confidence            999999999999984

>PRK07868 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.7e-39  Score=332.33  Aligned_cols=342  Identities=14%  Similarity=0.151  Sum_probs=236.7

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |++.|+++||+|+|+++|+++++++++||+++|++++||+|.   +++.++++.++++++|++.+..+.+...       
T Consensus       489 L~~~Gv~~Gd~VaI~~~n~~e~v~a~lA~~~aGav~vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~~-------  558 (994)
T PRK07868        489 LIAVGVRQGDRVGVLMETRPSALVAIAALSRLGAVAVLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQL-------  558 (994)
T ss_pred             HHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHhc-------
Confidence            457899999999999999999999999999999999999984   6899999999999999987766554321       


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcC-CCC--CCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLG-TLD--CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVL  157 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~  157 (415)
                      ...++.++.........  ........+++..... ..+  ....+..++|+++|+|| ||||.||++.++|.+......
T Consensus       559 ~~~iiv~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~  635 (994)
T PRK07868        559 PGRVLVLGGGESRDLDL--PDDADVIDMEKIDPDAVELPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAF  635 (994)
T ss_pred             CceEEEecCCccccccC--CcchhhhhhhhcCcccccCCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHH
Confidence            13445543211000000  0000011111111100 000  00112236899999998 588888888888877655443


Q ss_pred             hhhhhhhhccccCCCCCEEEEeCChhhHHHHHHHH-HhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHHHHH
Q 014951          158 SVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIET-HCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYT  235 (415)
Q Consensus       158 ~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~-~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~  235 (415)
                      .....+     .+..+|++++.+|++|.+++...+ ..+..|+++++.+. ++..+++.|++++||+++++|+++..+++
T Consensus       636 ~~~~~~-----~l~~~d~~L~~~Pl~h~~gl~~~l~~~l~gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~  710 (994)
T PRK07868        636 GTASAA-----ALDRRDTVYCLTPLHHESGLLVSLGGAVVGGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVD  710 (994)
T ss_pred             hhhhhc-----CCCCCCeEEEecChHHHhHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHh
Confidence            333333     678899999999999999998655 44556666666554 99999999999999999999999988764


Q ss_pred             HHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcC
Q 014951          236 GISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG  315 (415)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~  315 (415)
                      ...                                     ....+        .+++|.++  |+.+++++.+.+.+.++
T Consensus       711 ~~~-------------------------------------~~~~~--------~~slr~~~--g~gl~~~l~~~~~~~~~  743 (994)
T PRK07868        711 DPA-------------------------------------FVLHG--------NHPVRLFI--GSGMPTGLWERVVEAFA  743 (994)
T ss_pred             CcC-------------------------------------CccCC--------CCceEEEe--cCCCCHHHHHHHHHHhC
Confidence            100                                     00000        03788776  34499999999998886


Q ss_pred             -CceEEeeccCCCCceeeeecCCcccccCcccccccCe-EEEEeec----------CCCCCCCCCCCCCCeEEEecCCcc
Q 014951          316 -APLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTV-EARLESV----------PEMGYDALSSVPRGEICLRGNTLF  383 (415)
Q Consensus       316 -~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~-~~~i~~~----------~~~~~~~~~~~~~Gel~v~~~~~~  383 (415)
                       .++++.||+||++..... . . ..+.+++|+|+||+ +++|.+.          +++....++.|+.|||+++++.. 
T Consensus       744 ~~~l~~~YG~TE~~~~~~~-~-~-~~~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~ge~Gel~~~~~~~-  819 (994)
T PRK07868        744 PAHVVEFFATTDGQAVLAN-V-S-GAKIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEVNEVGVLLARARGP-  819 (994)
T ss_pred             chheeeeeecccccccccc-c-C-CCCCcccCCccCCCCceeEEEecCcCCceeecCCceEEEcCCCCceEEEEecCCC-
Confidence             789999999998754332 1 1 22348999999998 6766421          23311335677999999999853 


Q ss_pred             ccccCCchhhhh--hh--cCCceecCceEEEcCCCC
Q 014951          384 SGYYKRPDLTEE--VI--VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       384 ~gY~~~~~~~~~--~~--~~g~~~TGDlg~~d~~G~  415 (415)
                         + +|+.+..  .|  .+|||+|||+|++|+||+
T Consensus       820 ---~-~p~~t~~~~~~~~~dgw~~TGDlg~~d~dG~  851 (994)
T PRK07868        820 ---I-DPTASVKRGVFAPADTWISTEYLFRRDDDGD  851 (994)
T ss_pred             ---C-ChhhhhHhcccccCCEEEeccceEEEcCCCC
Confidence               3 3444322  24  379999999999999996

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]

Probab=100.00  E-value=3.6e-37  Score=278.06  Aligned_cols=350  Identities=16%  Similarity=0.166  Sum_probs=258.7

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |...|++.||.||+.|+|.+|++.++|+++++|++.+.||+++..+.|.|.+..++++.+|++.+..+.+.+..+.....
T Consensus       121 ~~~~~l~~GD~VAL~men~pefv~lWlGLaKlGv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~  200 (649)
T KOG1179|consen  121 LHAEGLKAGDVVALLMENRPEFVALWLGLAKLGVITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKN  200 (649)
T ss_pred             HHHhhcccCCEEEEecCCChhHHHHHHhHHhhCceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhc
Confidence            34678999999999999999999999999999999999999999999999999999999999999888877764433222


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcC-CCC---CCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLG-TLD---CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEV  156 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~  156 (415)
                      .-.+...+.....         ..+.++.+.++.. ..+   .........++++.||||||||.||+.++||.......
T Consensus       201 ~i~~~~~~~~~~~---------~g~~~L~~~l~~~~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a  271 (649)
T KOG1179|consen  201 GIHVFSLGPTSVP---------DGIESLLAKLSAAPKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGA  271 (649)
T ss_pred             cceEEecCCCCCC---------chHHHHHHhhcccccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence            2233333322111         0122333333332 111   22334567889999999999999999999999999888


Q ss_pred             hhhhhhhhhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHHHH
Q 014951          157 LSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIY  234 (415)
Q Consensus       157 ~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~  234 (415)
                      ..+...+     .+.++|+++..+|++|..+.+. +..++..|+++++-.. ++.++|+.-.+|+||+++-.-.+++.++
T Consensus       272 ~g~~~~~-----g~~~~DvvY~~lPLYHsaa~ilGi~~~l~~GaT~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl  346 (649)
T KOG1179|consen  272 AGFYYVF-----GMTADDVVYTTLPLYHSAAGILGIGGCLLHGATVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLL  346 (649)
T ss_pred             HHHHHHh-----CCCccceEEEcchhHHHHHHHHHHHHHHhcCceEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHH
Confidence            7665666     8899999999999999988876 7889999999999987 9999999999999999999999998887


Q ss_pred             HHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhc
Q 014951          235 TGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS  314 (415)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~  314 (415)
                      ++-....                                             ....++|..+  |.-+.+++.+.|.+.|
T Consensus       347 ~~p~~~~---------------------------------------------er~HkVRla~--GNGLR~diW~~Fv~RF  379 (649)
T KOG1179|consen  347 NQPPSPE---------------------------------------------ERQHKVRLAY--GNGLRPDIWQQFVKRF  379 (649)
T ss_pred             cCCCChh---------------------------------------------hcCceEEEEe--cCCCCchHHHHHHHHc
Confidence            6211100                                             0013666665  4558999999999999


Q ss_pred             CC-ceEEeeccCCCCceeeeecCCcccccCccccc------ccCeEEEEeec--------CCCCCCCCCCCCCCeEEEe-
Q 014951          315 GA-PLTQGYGLTESCSGCFTSLADVFNMIGTVGVP------MTTVEARLESV--------PEMGYDALSSVPRGEICLR-  378 (415)
Q Consensus       315 ~~-~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~------~~g~~~~i~~~--------~~~~~~~~~~~~~Gel~v~-  378 (415)
                      |. +|.+.||+||.....+.. +...   |.+|+.      +-.+++.-+|.        ++|--.++++||+|.+.-+ 
T Consensus       380 g~~~IgE~YgaTEgn~~~~N~-d~~v---GA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i  455 (649)
T KOG1179|consen  380 GIIKIGEFYGATEGNSNLVNY-DGRV---GACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKI  455 (649)
T ss_pred             CCCeEEEEeccccCcceeeee-cCcc---ccccchhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEe
Confidence            87 599999999976544433 2211   333321      11122222221        3444467889999976543 


Q ss_pred             -cCCc---cccccCCchhhhhhh-----c--CCceecCceEEEcCCCC
Q 014951          379 -GNTL---FSGYYKRPDLTEEVI-----V--DGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       379 -~~~~---~~gY~~~~~~~~~~~-----~--~g~~~TGDlg~~d~~G~  415 (415)
                       ...-   +.||.++.++|++..     .  |-||.|||+-..|+.||
T Consensus       456 ~~k~P~~~F~GY~g~~~~t~kKl~rDVFkkGD~~f~tGDlLv~D~~Gy  503 (649)
T KOG1179|consen  456 VQKNPLRSFLGYAGPKKATEKKLLRDVFKKGDVYFNTGDLLVADELGY  503 (649)
T ss_pred             ccCCchhhhccccCchhhhhhhhHHhhhccCcEEEeeCcEEEEecCCc
Confidence             2233   899999887776653     2  45999999999999996

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=2.4e-32  Score=273.58  Aligned_cols=335  Identities=22%  Similarity=0.261  Sum_probs=262.1

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |.+.|++++++|+++++.++++++.++|++++|+.++|+++.++.+.+.+++++++++.+++.......... .    +.
T Consensus       269 l~~~g~~~~~~V~i~~~rs~~~i~~~l~ilkaG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~~-~----~~  343 (642)
T COG1020         269 LISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVG-L----PG  343 (642)
T ss_pred             HHHcCCCCCCeEEEEcCCCHHHHHHHHHHHhcCCeEecCCCCChHHHHHHHHhhcCccEEEecccccccccc-C----Cc
Confidence            356789999999999999999999999999999999999999999999999999999999998332221000 0    00


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD  160 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~  160 (415)
                          +..+...                ..    ............+++.+|++|||||||.||||..+|+++.+......
T Consensus       344 ----~~~~~~~----------------~~----~~~~~~~~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~  399 (642)
T COG1020         344 ----LALDDAL----------------SE----IPDTDPIPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAG  399 (642)
T ss_pred             ----ccccccc----------------cc----CCccCcccccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHH
Confidence                1111100                00    00001111233568999999999999999999999999999777766


Q ss_pred             hhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC----CHHHHHHHHHhhCCeEEEeCcHHHHHHHHH
Q 014951          161 QMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTG  236 (415)
Q Consensus       161 ~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~  236 (415)
                      +.+     .....|+++...++.+.......+.++..|+++++.+.    ++..+.+.++++++|.+..+|.++..++..
T Consensus       400 ~~~-----~~~~~d~~l~~~s~~fD~~~~~~f~~l~~G~~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~  474 (642)
T COG1020         400 ARF-----GLDADDRVLALASLSFDASVFEIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLA  474 (642)
T ss_pred             Hhc-----CCCcccEEeecCCcccchhHHHHHHHHhCCCEEEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhc
Confidence            666     77888999999999888888889999999999999875    899999999999999999999999887652


Q ss_pred             HHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhc--
Q 014951          237 ISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS--  314 (415)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~--  314 (415)
                      .......                                      .     ....+|.+++||+.++..+...+....  
T Consensus       475 ~~~~~~~--------------------------------------~-----~~~~lr~~~~gGe~l~~~~~~~~~~~~~~  511 (642)
T COG1020         475 ALAPDLI--------------------------------------S-----PCERLRQLLSGGEALPLALVQRLLQLAAL  511 (642)
T ss_pred             hhhcccc--------------------------------------C-----CcccccEEEEcCCCCCHHHHHHHHHhccc
Confidence            0000000                                      0     002489999999999999988777655  


Q ss_pred             CCceEEeeccCCCCceeeeecCCcccc-cCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhh
Q 014951          315 GAPLTQGYGLTESCSGCFTSLADVFNM-IGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLT  393 (415)
Q Consensus       315 ~~~~~~~yG~tE~~~~~~~~~~~~~~~-~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~  393 (415)
                      ...+.+.||+||+.............. ..++|+|++++.+.|.| .....++++  ..||+++.|.+++.||+++|++|
T Consensus       512 ~~~l~~~ygpTe~~~~~~~~~~~~~~~~~~piG~p~~n~~~~ild-~~~~~~p~g--v~gel~i~g~~~a~gy~~~p~lt  588 (642)
T COG1020         512 ARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPVANTQLYILD-QGLRPLPLG--VPGELYIAGLGLALGYLNRPDLT  588 (642)
T ss_pred             cceEeeccCccHHhhheeeEEcccccCCCCCcceeeCCCeEEEEC-CCCCcCCCC--CCeeeEECCcchhhhhcCChhhh
Confidence            468999999999766554433222211 36899999999999999 666555554  88999999999999999999999


Q ss_pred             hhhhcC-CceecCceEEEcCCCC
Q 014951          394 EEVIVD-GWFHTGDIGEWQPMEL  415 (415)
Q Consensus       394 ~~~~~~-g~~~TGDlg~~d~~G~  415 (415)
                      .++|.. ++|+|||++++++||.
T Consensus       589 ~~~f~~~~~y~tgD~~r~~~dg~  611 (642)
T COG1020         589 AERFIALRLYRTGDLARPLADGA  611 (642)
T ss_pred             HHHhhhccCccCCCeeeECCCCe
Confidence            999954 5999999999999883

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.97  E-value=7.9e-30  Score=237.25  Aligned_cols=210  Identities=28%  Similarity=0.406  Sum_probs=168.5

Q ss_pred             CCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhhhhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEE
Q 014951          123 PKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIG  202 (415)
Q Consensus       123 ~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv  202 (415)
                      ...++|+++++|||||||.||+|+++|.++..........       +...++++..+|++|..++..++.++..|++++
T Consensus        31 ~~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~-------~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v  103 (358)
T PRK07824         31 EPIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDR-------LGGPGQWLLALPAHHIAGLQVLVRSVIAGSEPV  103 (358)
T ss_pred             CCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhc-------cCCCCeEEEECChHHHHHHHHHHHHHHcCCeEE
Confidence            3456899999999999999999999999999887664432       235678999999999999887888889999888


Q ss_pred             EeC----CCHHHHHHHHHhhC--CeEEEeCcHHHHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchh
Q 014951          203 FWR----GDVRYLMEDIQELK--PTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLL  276 (415)
Q Consensus       203 ~~~----~~~~~~~~~i~~~~--~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (415)
                      +..    .++..+++.+++++  .++...+|..+..++....                                      
T Consensus       104 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~--------------------------------------  145 (358)
T PRK07824        104 ELDVSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPA--------------------------------------  145 (358)
T ss_pred             ecCcCCCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCcc--------------------------------------
Confidence            732    28999999999998  4566678877765432100                                      


Q ss_pred             hHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCCceEEeeccCCCCceeeeecCCcccccCcccccccCeEEEE
Q 014951          277 DSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARL  356 (415)
Q Consensus       277 ~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i  356 (415)
                      ...+        ..++|.+++||+++++++.+++.+ ++.++++.||+||++..+           ...|+|++++++++
T Consensus       146 ~~~~--------~~~l~~i~~gG~~l~~~~~~~~~~-~~~~v~~~YG~TE~~~~~-----------~~~G~~~~g~~v~i  205 (358)
T PRK07824        146 ATAA--------LAELDAVLVGGGPAPAPVLDAAAA-AGINVVRTYGMSETSGGC-----------VYDGVPLDGVRVRV  205 (358)
T ss_pred             ccCC--------cccceEEEECCCCCCHHHHHHHHh-cCCcEEecccCCccCCCc-----------CcCceeCCCCEEEe
Confidence            0000        137999999999999999998876 589999999999987543           23589999999998


Q ss_pred             eecCCCCCCCCCCCCCCeEEEecCCccccccCCchhhhhhh-cCCceecCceEEEcCCC
Q 014951          357 ESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQPME  414 (415)
Q Consensus       357 ~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~~~~-~~g~~~TGDlg~~d~~G  414 (415)
                      .+              |||+++|+.++.||+++++.+  .| .+|||+|||+|++ +||
T Consensus       206 ~~--------------Gei~v~g~~~~~gY~~~~~~~--~~~~~g~~~TGDl~~~-~~g  247 (358)
T PRK07824        206 ED--------------GRIALGGPTLAKGYRNPVDPD--PFAEPGWFRTDDLGAL-DDG  247 (358)
T ss_pred             cC--------------CEEEEecCccccccCCCcccc--cccCCCceecccEEEE-eCC
Confidence            44              999999999999999988743  34 5789999999999 666

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=99.94  E-value=1.1e-25  Score=213.71  Aligned_cols=226  Identities=19%  Similarity=0.215  Sum_probs=163.2

Q ss_pred             CCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhhhhhhhccccCCCCCEEEEeCChhhHHHHH-HHHHhhhcCcEEE
Q 014951          124 KKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQI-IETHCIHKGCSIG  202 (415)
Q Consensus       124 ~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~vv  202 (415)
                      ...++++++++||||||.||++.+||.++..........+..  ..+..+|++++..++.+..+.. ..+..+..|++++
T Consensus        72 ~~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~--~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  149 (422)
T TIGR02155        72 VPREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRA--AGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVV  149 (422)
T ss_pred             CChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHH--cCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEE
Confidence            345678899999999999999999999987654433222111  2567889998876655433332 3455677899988


Q ss_pred             EeCC-CHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHH
Q 014951          203 FWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVF  281 (415)
Q Consensus       203 ~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (415)
                      ..+. ++..+++.|++++||++.++|+++..+++.+........                                    
T Consensus       150 ~~~~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~------------------------------------  193 (422)
T TIGR02155       150 PISGGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPA------------------------------------  193 (422)
T ss_pred             ecCCCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcc------------------------------------
Confidence            7765 789999999999999999999999988764332100000                                    


Q ss_pred             HHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCCceEEeeccCCCCc-eeeeecCCcccccCcccccc--cCeEEEEee
Q 014951          282 SKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCS-GCFTSLADVFNMIGTVGVPM--TTVEARLES  358 (415)
Q Consensus       282 ~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~-~~~~~~~~~~~~~~~~G~~~--~g~~~~i~~  358 (415)
                             ..++|.++++||++++++.+.+++.|++++++.||+||+++ .+......     ...|.++  +++.++|+|
T Consensus       194 -------~~~lr~i~~~ge~l~~~~~~~i~~~~g~~v~~~YG~tE~~~~~~~~~~~~-----~~~g~~~~~~~~~~eivd  261 (422)
T TIGR02155       194 -------QTSLQVGIFGAEPWTNAMRKEIEARLGMKATDIYGLSEVIGPGVAMECVE-----TQDGLHIWEDHFYPEIID  261 (422)
T ss_pred             -------cCceEEEEEeCCcCCHHHHHHHHHHhCCceEecccchhhcCCceeecccc-----cCCCceEecCeeEEEEEC
Confidence                   02799999999999999999999999999999999999853 22221111     1123343  356778888


Q ss_pred             cCCCCCCCCCCCCCCeEEEecCCccccccCCchhhhhhhcCCceecCceEEEcCC
Q 014951          359 VPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPM  413 (415)
Q Consensus       359 ~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~~~~~~g~~~TGDlg~~d~~  413 (415)
                       ++++ .++++|+.|||++++.            +..+|..+||+|||+++++++
T Consensus       262 -~~~g-~~v~~Ge~Gelvvt~~------------~~~~~p~~ry~TGDl~~~~~~  302 (422)
T TIGR02155       262 -PHTG-EVLPDGEEGELVFTTL------------TKEALPVIRYRTRDLTRLLPG  302 (422)
T ss_pred             -CCCC-CCCCCCCeeEEEEecC------------CccccceeeEEcCcEEEEECC
Confidence             4332 4456789999999863            344556789999999999875

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=99.91  E-value=1.2e-23  Score=195.02  Aligned_cols=191  Identities=16%  Similarity=0.167  Sum_probs=143.1

Q ss_pred             CCeEEEEecCCCCCCCceEEeecHHHHHHhhhhhhhhhhccccC--CCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEE
Q 014951          127 TNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVC--SEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGF  203 (415)
Q Consensus       127 ~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~--~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~  203 (415)
                      ++.++++|||||||.||+|.+||+++...+..+...+     .+  ...+++++.+|++|.+++.. ++.++..|+++++
T Consensus        95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~  169 (386)
T TIGR02372        95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKIL-----GERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQ  169 (386)
T ss_pred             CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHh-----CcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEe
Confidence            5578999999999999999999999998887766554     33  34468999999999988764 6778889999988


Q ss_pred             eCC-CHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHH
Q 014951          204 WRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFS  282 (415)
Q Consensus       204 ~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (415)
                      .+. ++..+++.++.+  |++.++|++++.+.+..                                         .++ 
T Consensus       170 ~~~~~~~~~l~~i~~~--t~~~~~P~~l~~l~~~~-----------------------------------------~~l-  205 (386)
T TIGR02372       170 LAAAPASGIMRHARPG--DLIVGTPFIWEQLADLD-----------------------------------------YRL-  205 (386)
T ss_pred             cCCCChHHHHHhhccC--CEEEECcHHHHHHHhhC-----------------------------------------cCC-
Confidence            765 788888887654  89999999998875410                                         000 


Q ss_pred             HHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCC-ceEEeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCC
Q 014951          283 KIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGA-PLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPE  361 (415)
Q Consensus       283 ~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~-~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~  361 (415)
                             ++++. ++||+++++++.+.+++. +. .+++.||+||++++.....      ++..|+++|++++++ +  +
T Consensus       206 -------~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i~~~~~------~~~~~~~~p~~~~~~-~--~  267 (386)
T TIGR02372       206 -------PGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGIGLREA------PDDPFRLLPDLACFA-D--T  267 (386)
T ss_pred             -------Cccee-EecCCCCCHHHHHHHHHh-cccchhheeccccccccccccC------CCCCcccCCCccccC-C--C
Confidence                   25665 678999999999999875 54 7999999999987544321      134577888876643 1  1


Q ss_pred             CCCCCCCCCCCCeEEEecCCccccccCCchhhhhhhcCCceecCceEEEcCCCC
Q 014951          362 MGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       362 ~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~~~~~~g~~~TGDlg~~d~~G~  415 (415)
                      +.          +   .|+                  ..|++|||+|++|++|+
T Consensus       268 ~~----------~---~g~------------------~~~~~tgD~g~~d~~G~  290 (386)
T TIGR02372       268 LS----------S---AGL------------------ARRLDLQDRLAWDKDGG  290 (386)
T ss_pred             cc----------C---CCc------------------cceeecCceEEEcCCCc
Confidence            11          0   021                  12689999999999985

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.89  E-value=1.1e-21  Score=186.49  Aligned_cols=223  Identities=17%  Similarity=0.091  Sum_probs=157.6

Q ss_pred             CCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhhhhhhhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEE
Q 014951          124 KKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIG  202 (415)
Q Consensus       124 ~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv  202 (415)
                      ...++++.+.+||||||.||+|.+||.++..........+..  ..+.++|+++...|..+..+... .+.++..|++++
T Consensus        83 ~~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~--~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi  160 (445)
T TIGR03335        83 ADWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVS--QGFTAGDRMVICASYGMNVGANTMTLAAREVGMSII  160 (445)
T ss_pred             CCHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHH--cCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEE
Confidence            346788899999999999999999999988766554433211  25678899999998887665543 455677888775


Q ss_pred             EeCCCHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHH
Q 014951          203 FWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFS  282 (415)
Q Consensus       203 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (415)
                      ... .....++.|+.+++|.+.++|+.+..+.+.+.......                                      
T Consensus       161 ~~~-~~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~--------------------------------------  201 (445)
T TIGR03335       161 PEG-KCTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDP--------------------------------------  201 (445)
T ss_pred             cCC-chhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCc--------------------------------------
Confidence            433 44567899999999999999998877765432210000                                      


Q ss_pred             HHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCCceEEeeccCCCCceeeeecCCcccccCcccccc--cCeEEEEeecC
Q 014951          283 KIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPM--TTVEARLESVP  360 (415)
Q Consensus       283 ~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~--~g~~~~i~~~~  360 (415)
                           ...++|.+++|||++++++.+++++.+++++++.||+||++....+.        ...|..+  +.+.++|+| +
T Consensus       202 -----~~~~lr~ii~gGE~l~~~~r~~ie~~~g~~v~~~YG~TE~~~~~~c~--------~~~g~h~~~d~~~vEIvD-p  267 (445)
T TIGR03335       202 -----AESSIRRLVVGGESFADESRNYVEELWGCEVYNTYGSTEGTMCGECQ--------AVAGLHVPEDLVHLDVYD-P  267 (445)
T ss_pred             -----ccCcceEEEEcCCCCCHHHHHHHHHHhCCcEEecCChhhhhheEEec--------CCCCccccCCceEEEEEc-C
Confidence                 00379999999999999999999999999999999999986332221        1124444  457889999 6


Q ss_pred             CCCCCCCCCCCCCeEEEecCCccccccCCchhhhhhhcCCceecCceEEE
Q 014951          361 EMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEW  410 (415)
Q Consensus       361 ~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~~~~~~g~~~TGDlg~~  410 (415)
                      +++ .++++|+.|||++++-....        +...+.=--|+|||++++
T Consensus       268 ~~~-~~vp~Ge~GELvvT~L~~~~--------~r~~~PliRYrtgD~~~~  308 (445)
T TIGR03335       268 RHQ-RFLPDGECGRIVLTTLLKPG--------ERCGSLLINYDTEDTTVV  308 (445)
T ss_pred             CCC-CCCcCCCceEEEEEecCCCC--------ccCCceEEEeecCceEEE
Confidence            554 45578899999998632100        000111114899999987

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.86  E-value=3.9e-20  Score=178.77  Aligned_cols=352  Identities=12%  Similarity=0.103  Sum_probs=227.0

Q ss_pred             CCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCC------HHHHHHHHHhcCceEEEEcCCChhhhhh--cCc
Q 014951            4 RGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG------ANAVEFIINHAEVSIAFVQENKIPSILS--CLP   75 (415)
Q Consensus         4 ~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~------~~~l~~~l~~~~~~~ii~~~~~~~~~~~--~~~   75 (415)
                      .-+++||.|++++++++|++++++||+.+|++++|+.|...      -..+..+++.+++++|+++.+....+..  +..
T Consensus       822 ~~lk~Gd~V~Lmy~~sie~vaa~~~Cly~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~  901 (1363)
T KOG3628|consen  822 GHLKAGDHVVLMYPPSIEFVAAIYACLYLGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASA  901 (1363)
T ss_pred             ccCCCCCeEEEEcCChHHHHHHHHHHHhcCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHH
Confidence            35899999999999999999999999999999999987533      3468889999999999999875544332  111


Q ss_pred             cC-CCCccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHH
Q 014951           76 RC-CLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA  154 (415)
Q Consensus        76 ~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~  154 (415)
                      .. ...+..++.+........          .....+.+. ....+......+.+|++-+.--++|..-++.++|..+++
T Consensus       902 ~~~~s~~p~i~~~~~~~~t~~----------k~~~~~~k~-~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla  970 (1363)
T KOG3628|consen  902 HVDQSAIPLILVLPKLPETIR----------KRKKNIKKL-NTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLA  970 (1363)
T ss_pred             Hhhhhcchhhhcccccchhhh----------hhhhhhhcc-CCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHH
Confidence            00 022233333333221100          001111111 111112233567899999988899999999999999999


Q ss_pred             HhhhhhhhhhhccccCCCCCEEEEeCChhhHHHHH-HHHHhhhcCcEEEEeCC-----CHHHHHHHHHhhCCeEEEeCcH
Q 014951          155 EVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQI-IETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPR  228 (415)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~vv~~~~-----~~~~~~~~i~~~~~t~~~~~P~  228 (415)
                      .+...+..+     .+.+..-++...+.+-+.|+. +++..+|.|.+.++++.     ++..++..|+++++.-++.+-.
T Consensus       971 ~Ck~iKe~~-----~l~~~rpl~~~~~~~sGlgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~ 1045 (1363)
T KOG3628|consen  971 FCKIIKETC-----QLYKSRPLLGCSSPYSGLGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYS 1045 (1363)
T ss_pred             HHHHHHHHH-----ccccCCceEEEecCccchhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHH
Confidence            999998887     666666666666666666665 68999999999888765     8999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHH
Q 014951          229 VYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEE  308 (415)
Q Consensus       229 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~  308 (415)
                      .++.+.+++..+........                                     ...  +-..++..-+.....+.+
T Consensus      1046 tln~c~~~l~t~~enl~~~g-------------------------------------nn~--s~s~vv~~~~RPr~ali~ 1086 (1363)
T KOG3628|consen 1046 TLNLCQKGLETSVENLSKRG-------------------------------------NNT--SSSIVVPAEERPRIALIA 1086 (1363)
T ss_pred             HHHHHHhccccccchhhhhh-------------------------------------ccc--ccceeeecCCccHHHHHH
Confidence            99888775544332221100                                     000  012333344444444444


Q ss_pred             HHHHhc---C---CceEEee-------------ccCCCCceee-eec--------CCcc----cccCcccccccCeEEEE
Q 014951          309 FLRVTS---G---APLTQGY-------------GLTESCSGCF-TSL--------ADVF----NMIGTVGVPMTTVEARL  356 (415)
Q Consensus       309 ~~~~~~---~---~~~~~~y-------------G~tE~~~~~~-~~~--------~~~~----~~~~~~G~~~~g~~~~i  356 (415)
                      -|.+.+   +   ..+-..|             ...|-+.... ...        .+..    -..-..|...+++++.|
T Consensus      1087 sf~klfa~igLsp~avStsys~r~Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~dSG~~~~~~~i~I 1166 (1363)
T KOG3628|consen 1087 SFKKLFAAIGLSPRAVSTSYSSRVNPFICLRSYSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLYDSGKLPVYTDIAI 1166 (1363)
T ss_pred             HHHHHHHHcCCChhhhcccccccCChHhhhccccCCCCcceeechhhhhccceeeeecCCCCccccccCCcccccceeEE
Confidence            444433   1   1122222             2222221110 000        0000    00122488889999999


Q ss_pred             eecCCCCCCCCCCCCCCeEEEecCCccccccCCch-hhhhhhc----------CCceecCceEEEcC
Q 014951          357 ESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPD-LTEEVIV----------DGWFHTGDIGEWQP  412 (415)
Q Consensus       357 ~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~-~~~~~~~----------~g~~~TGDlg~~d~  412 (415)
                      ++ +|.. .+|.+|+.||||++|.+-+.+|+.-.+ .....|.          .+|-||||+|++..
T Consensus      1167 vn-PEtk-~pc~dge~GEIW~~S~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~ 1231 (1363)
T KOG3628|consen 1167 VN-PETK-GPCRDGELGEIWVNSAHNASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLRR 1231 (1363)
T ss_pred             eC-Cccc-cccccCCcceEEeccccccccccccCchhhhhhhhhhccccccccccceeeeeeeeeee
Confidence            99 6665 788899999999999999888875322 2222231          34999999999753

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=99.86  E-value=9.4e-21  Score=162.86  Aligned_cols=180  Identities=13%  Similarity=0.082  Sum_probs=128.6

Q ss_pred             Ccc-CCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCC
Q 014951            1 MRS-RGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCL   79 (415)
Q Consensus         1 L~~-~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~   79 (415)
                      |++ .|+++||+|+|+++|+++++++++||+++|++++|++             .++++++|++++..+.+..      .
T Consensus        44 L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~v~vp~n-------------~s~a~~~v~~~~~~~~~~~------~  104 (227)
T TIGR03089        44 LQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGVEVVLAG-------------DPDADVVVTGPDRLAAAAG------S  104 (227)
T ss_pred             HHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEeCC-------------CCCCCEEEeCcchhhhccc------C
Confidence            345 6999999999999999999999999999999999995             7899999999887666421      1


Q ss_pred             CccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCC-CCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhh
Q 014951           80 YLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP-PKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS  158 (415)
Q Consensus        80 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~  158 (415)
                        +.++.+......... .......+.++.+............ ...++|++.++||||+         +|++++.+.  
T Consensus       105 --~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~--  170 (227)
T TIGR03089       105 --GEVVALSLDPLGRRV-AGELPPGVIDFAPEVRVHGDQFAPYEPPDATAPALVAGGGEW---------TGAELVAAA--  170 (227)
T ss_pred             --CceEEEeccccccCC-CCCCCCcccchhhhhhccCCCCCCCCCCCCCcceeeeccccc---------cHHHHHHHH--
Confidence              223332110000000 0000112235555554322222212 4567999999999985         666666554  


Q ss_pred             hhhhhhhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCe
Q 014951          159 VDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPT  221 (415)
Q Consensus       159 ~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t  221 (415)
                        ..+     .+.++|+++ .+|++|.+|+.. ++.+++.|+++++.+. ++..+++.|++++||
T Consensus       171 --~~~-----~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~v~~~rFd~~~~l~~i~~~~vT  227 (227)
T TIGR03089       171 --RAA-----GLPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSLVLVTHPDPARLDQIAETERVT  227 (227)
T ss_pred             --hhc-----CCCCCCeEE-ecCCCchHHHHHHHHHHhccCceEEEecCCCHHHHHHHHHhhcCC
Confidence              222     678899999 999999999975 7889999999988865 999999999999987

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.77  E-value=4.3e-17  Score=147.95  Aligned_cols=223  Identities=20%  Similarity=0.184  Sum_probs=164.0

Q ss_pred             CCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhhhhhhhccccCCCCCEEEEeCChh-hHHHHHHHHHhhhcCcEEE
Q 014951          124 KKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA-HIYDQIIETHCIHKGCSIG  202 (415)
Q Consensus       124 ~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~-~~~~~~~~~~~l~~G~~vv  202 (415)
                      ...++...|--||||||+|+.+.+++..+......+.+.+..  .....+|++....... +..++...+++--.|++++
T Consensus        87 ~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~--~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vi  164 (438)
T COG1541          87 VPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYS--AGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVI  164 (438)
T ss_pred             ccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHH--ccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEE
Confidence            345666779999999999999999999988888777665532  3667888887665532 2233344555556788877


Q ss_pred             EeCC-CHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHH
Q 014951          203 FWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVF  281 (415)
Q Consensus       203 ~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (415)
                      -... +.+..+++++.+++|++.++|+.+..+++.+........                                    
T Consensus       165 p~~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~------------------------------------  208 (438)
T COG1541         165 PISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPD------------------------------------  208 (438)
T ss_pred             ccCCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChh------------------------------------
Confidence            7665 899999999999999999999999999886665420000                                    


Q ss_pred             HHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCCceEEeeccCCCCcee--eeecCCcccccCccccc--ccCeEEEEe
Q 014951          282 SKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGC--FTSLADVFNMIGTVGVP--MTTVEARLE  357 (415)
Q Consensus       282 ~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~--~~~~~~~~~~~~~~G~~--~~g~~~~i~  357 (415)
                       +      .++|.+++|+|+++++..+.+.+.||+..++.||.||..+..  .|..       .. |.+  -+...+.|+
T Consensus       209 -~------~~lk~~i~gaE~~see~R~~ie~~~g~~~~diYGltE~~g~g~~eC~~-------~~-glhi~eD~~~~Ei~  273 (438)
T COG1541         209 -K------LSLKKGIFGAEPWSEEMRKVIENRFGCKAFDIYGLTEGFGPGAGECTE-------RN-GLHIWEDHFIFEIV  273 (438)
T ss_pred             -h------cceeEEEEecccCCHHHHHHHHHHhCCceeeccccccccCCccccccc-------cc-CCCcchhhceeeee
Confidence             0      389999999999999999999999999999999999986652  1211       11 333  356777888


Q ss_pred             ecCCCCCCCCCCCCCCeEEEecCCccccccCCchhhhhhhcCCceecCceEEEcCC
Q 014951          358 SVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPM  413 (415)
Q Consensus       358 ~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~~~~~~g~~~TGDlg~~d~~  413 (415)
                      | ++.+ ..+++|+.|||.++.            +++..+.---|+|||++++.++
T Consensus       274 d-P~t~-e~l~dge~GelV~T~------------L~~~~~PlIRYrtgDit~i~~~  315 (438)
T COG1541         274 D-PETG-EQLPDGERGELVITT------------LTKEGMPLIRYRTGDITVILSD  315 (438)
T ss_pred             c-CCcC-ccCCCCCeeEEEEEe------------ccccCcceEEEEcCCeeEeccc
Confidence            8 5444 566677999999975            2222222225999999999873

>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.61  E-value=8.5e-15  Score=146.11  Aligned_cols=271  Identities=15%  Similarity=0.096  Sum_probs=161.7

Q ss_pred             ccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCC----HHHHHHH---HHhcCceEEEEcCCChhhhhhcC
Q 014951            2 RSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG----ANAVEFI---INHAEVSIAFVQENKIPSILSCL   74 (415)
Q Consensus         2 ~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~----~~~l~~~---l~~~~~~~ii~~~~~~~~~~~~~   74 (415)
                      ...|..+|+.|++++..+.++++..++.++.|..+++++|+++    ++++..+   +......++.  ..  + +....
T Consensus        87 ~~~~~~~~~~v~i~~~~~~d~~v~v~~~~~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i~~--~l--~-i~~~~  161 (1032)
T KOG1178|consen   87 VSLGSLRGTTVAIYMLPSVDLVVSVFAVLAAGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEIVR--RL--N-IIDIL  161 (1032)
T ss_pred             hhcccccCceEEEeccCcCCeeeeeeehhhcceEEEEecCCCcccccchHHHhhhhhheeccceehh--hh--h-hHHHH
Confidence            3567789999999999999999999999999999999999999    3322111   1111111100  00  0 00000


Q ss_pred             ccCCCCccEEEEecCCCchhhHHhhhcCce-eecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHH
Q 014951           75 PRCCLYLKTIVSFANVSSSQKKEAEELGVS-CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV  153 (415)
Q Consensus        75 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~  153 (415)
                      ..           +-..        ..... ..+.-..+........-...-++..+.+.||||+||.||+|..+|..+.
T Consensus       162 ~~-----------~~~~--------~~sv~~~~~~f~~~~~~~~~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~  222 (1032)
T KOG1178|consen  162 LN-----------SLFP--------KLSVETIADSFQMVLHNEDTREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLA  222 (1032)
T ss_pred             hh-----------cccc--------ccchhhccchhhhhhccCCCcceeeecccccceEeecccccccccccchhHHHHH
Confidence            00           0000        00000 0000011111111222233456778999999999999999999999999


Q ss_pred             HHhhhhhhhhhhccccCCCCCEEEEeCCh-hhHHHHHHHHHhhhcCcEEEEeCC----CHHHHHHHHHhhCCeEEEeCcH
Q 014951          154 AEVLSVDQMFVVTGKVCSEEDTYFSFLPL-AHIYDQIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPR  228 (415)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~d~~l~~~p~-~~~~~~~~~~~~l~~G~~vv~~~~----~~~~~~~~i~~~~~t~~~~~P~  228 (415)
                      ....+....+     .....+.+-..... ++..-.......+..|+.+..+..    ++.++...+++++++.++.+|+
T Consensus       223 ~~fdw~~~~f-----~~t~s~~~~~~~~~~~~d~i~~~~~~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a  297 (1032)
T KOG1178|consen  223 NAFDWMFTTF-----PPTGSDRFTFKTSVYFDDTIQKFIGALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPA  297 (1032)
T ss_pred             hhhhhccccC-----CcCccchhhhhheeecccchHHHHhhHhhcCceeecccccCccchhhHHHHHHhhhheeeeechh
Confidence            9999987776     56666665222223 222222334455666776666533    5899999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHH
Q 014951          229 VYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEE  308 (415)
Q Consensus       229 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~  308 (415)
                      ++++++.+...-......             ...++                  ++.... +.|+....+|+|....+..
T Consensus       298 ~~~~l~~~~~~~~~~l~~-------------~~~~~------------------dl~~~~-~~Lkl~~~~~ep~~v~l~~  345 (1032)
T KOG1178|consen  298 MCQLLLAILTTSLPLLEH-------------AFSLS------------------DLLTKR-SCLKLVVLGGEPLLVSLYT  345 (1032)
T ss_pred             hhhhhhhhcCcchhhhhh-------------hhhcc------------------cccccc-hhheeeeecCCccchhhhh
Confidence            998887643321000000             00000                  000000 3789999999999999888


Q ss_pred             HHHHhcC-CceEEeeccCCCCceeee
Q 014951          309 FLRVTSG-APLTQGYGLTESCSGCFT  333 (415)
Q Consensus       309 ~~~~~~~-~~~~~~yG~tE~~~~~~~  333 (415)
                      .+...+. .-...-|++++....+..
T Consensus       346 s~~~~~~~~~~~~~y~s~~~~~~~s~  371 (1032)
T KOG1178|consen  346 STFDLLAEIFFGLPYLSTDPTGLVSY  371 (1032)
T ss_pred             hhhhcccceeeeecccCCCCccceeH
Confidence            4443332 223333888888776543

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.51  E-value=1.1e-13  Score=134.98  Aligned_cols=355  Identities=16%  Similarity=0.138  Sum_probs=224.8

Q ss_pred             ccCCCCCCCeEEEEcCCc--HhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCC
Q 014951            2 RSRGVNPGDRCGIYGSNC--PEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCL   79 (415)
Q Consensus         2 ~~~Gv~~gd~V~l~~~n~--~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~   79 (415)
                      .+.|+.++|+|.++...+  .|+++..++|...|.+++|+.+..+.+++...++....+++++.......+.+.....  
T Consensus       143 ~ksgl~~~~~vvL~Y~~~e~ie~~isl~gc~l~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~--  220 (1363)
T KOG3628|consen  143 NKSGLKPGDRVVLYYRKCEAIEFLISLFGCFLLGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSPV--  220 (1363)
T ss_pred             hccCCCCCcEEEEEEEhhhhhHHhhhhccccccceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCcc--
Confidence            456999999999999986  8999999999999999999999999999999999999999998876554433221100  


Q ss_pred             CccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCC-CCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhh
Q 014951           80 YLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS  158 (415)
Q Consensus        80 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~  158 (415)
                      +.                  .....++.+.++-.... .....++..-. ..+|-||++++|.--|++++|. ++.+.+.
T Consensus       221 s~------------------~k~v~~w~t~~~k~~~~~~k~~~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~  280 (1363)
T KOG3628|consen  221 SL------------------AKAVAWWKTNDFKGNYTKDKIKKPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRV  280 (1363)
T ss_pred             cH------------------HHHHHhhhcccccceeehhhccCCceeee-eEEEEEeccchhceeeeEeecc-cccchhh
Confidence            00                  00000111111110000 11111222223 8899999999999999999998 5554443


Q ss_pred             hhhhhh---------------hccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC----CHHHHHHHHHhh
Q 014951          159 VDQMFV---------------VTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG----DVRYLMEDIQEL  218 (415)
Q Consensus       159 ~~~~~~---------------~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~----~~~~~~~~i~~~  218 (415)
                      +.....               ..-...+.++.++.........|++. ++.+++.|.+.+.++.    .|..+.+++.++
T Consensus       281 ~~~~~nt~Pa~~~~~~~~~~~~~v~~~~~~~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~  360 (1363)
T KOG3628|consen  281 LTSIPNTNPARFAAAFYGCLHAHVFPVPSEDVLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKY  360 (1363)
T ss_pred             hhhccCcChHHHHHhhhcchhhhccccCcccceeeccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccc
Confidence            321110               01113456777777777777777775 7889999999988875    788999999999


Q ss_pred             CCeEEEeCcHHHHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEe
Q 014951          219 KPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSG  298 (415)
Q Consensus       219 ~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~  298 (415)
                      +++++..--..+.+....+..                                  .....+.+.+=+..-.+++|.+++.
T Consensus       361 R~~~~ltd~~~Lkq~~~ny~~----------------------------------~p~a~~s~~k~~t~d~sslk~C~Vt  406 (1363)
T KOG3628|consen  361 RATWSLTDYAGLKQPVYNYQE----------------------------------DPKATLSFKKYKTPDLSSLKGCMVT  406 (1363)
T ss_pred             eeEEEeecccccCcccccccC----------------------------------CcccccchhhccCCCccceeeeEEe
Confidence            999988766555443221110                                  0111111111111222689999999


Q ss_pred             cCCCCHHHHHHHHHhc----CC-ceEE-----------------eeccCCCCceeeeecCCcc-----------------
Q 014951          299 AAPLPIHVEEFLRVTS----GA-PLTQ-----------------GYGLTESCSGCFTSLADVF-----------------  339 (415)
Q Consensus       299 G~~~~~~~~~~~~~~~----~~-~~~~-----------------~yG~tE~~~~~~~~~~~~~-----------------  339 (415)
                      -..+..+..+.....+    |. .+..                 .-+++|.+...-..+....                 
T Consensus       407 c~~vd~~~~~ivs~~wlk~lg~~~~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e~ll~~~~L~~~  486 (1363)
T KOG3628|consen  407 CTAVDTEFQEIVSDRWLKPLGETNVKVVDFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGEGLLSKEALKLN  486 (1363)
T ss_pred             eeecchHHHHHHHHhhcccccCcCcceeechhhhhhhcCceEEEeccchhhhcccccCcccccccCccceeeeccccccc
Confidence            9999888665544443    21 1111                 2223343332211111000                 


Q ss_pred             ----------c--ccCcccccccC-eEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhhhhhhc--------
Q 014951          340 ----------N--MIGTVGVPMTT-VEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV--------  398 (415)
Q Consensus       340 ----------~--~~~~~G~~~~g-~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~~~~~--------  398 (415)
                                .  ....+|...|| +.+.|++  ++....|..+++|||||.+++...+||.-+..|...|.        
T Consensus       487 ~V~v~~e~~is~~s~kd~~~i~~g~~t~~vv~--~~t~~LC~~~eVGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~~  564 (1363)
T KOG3628|consen  487 EVEVDTEDDISSLSVKDVLCIMPGDATLAVVN--PDTNQLCKTDEVGEIWVSSNSLGKLFYALDKQTENTFKATPVESSG  564 (1363)
T ss_pred             eEEEcchhhhhhcCccccceecccceEEEEeC--CCcccccccCcceeEEEecCCcccceeeccccccceEEeeeccccC
Confidence                      0  01225666665 3334444  55567788899999999999999999988777776662        


Q ss_pred             -----CCceecCceEEEcCCC
Q 014951          399 -----DGWFHTGDIGEWQPME  414 (415)
Q Consensus       399 -----~g~~~TGDlg~~d~~G  414 (415)
                           ..|.|||-+|++.+++
T Consensus       565 ~~~~n~~FmRtGLlGFv~~gk  585 (1363)
T KOG3628|consen  565 KPPSNVPFMRTGLLGFVHNGK  585 (1363)
T ss_pred             CCCccchhhhhcceeeeeCCe
Confidence                 1399999999998765

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=99.38  E-value=6.9e-11  Score=110.46  Aligned_cols=146  Identities=15%  Similarity=0.127  Sum_probs=99.3

Q ss_pred             eEEEEecCCCCCCCceEEeecHHHHHHhhhhhhhhhhccccCCCCCEEEEe--CChhhHHHHHHHHHhhhc-CcEEEEeC
Q 014951          129 ISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSF--LPLAHIYDQIIETHCIHK-GCSIGFWR  205 (415)
Q Consensus       129 ~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~--~p~~~~~~~~~~~~~l~~-G~~vv~~~  205 (415)
                      -..+..||||||.|-.+..+..................  .+..++++...  .+. +.+..      +.. ...+.+.+
T Consensus       101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~--g~~~g~r~a~~~~~~~-~ly~~------~~~~~~~~~~~~  171 (430)
T TIGR02304       101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPD--GLFAKHRIAFFLRADN-NLYQS------VNNRWISLDFFD  171 (430)
T ss_pred             cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCcc--ccccCCcEEEEEccCh-hHHHH------HHhccceeeecC
Confidence            45677899999999999999887654433322221111  33344444443  221 21211      111 11122221


Q ss_pred             --CCHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHH
Q 014951          206 --GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSK  283 (415)
Q Consensus       206 --~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (415)
                        .+.+..++.|++++|+.+.+.|+.+..|++.+.....                                  +      
T Consensus       172 l~~~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l----------------------------------~------  211 (430)
T TIGR02304       172 LLAPFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGEL----------------------------------T------  211 (430)
T ss_pred             CCcCHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCC----------------------------------C------
Confidence              3789999999999999999999999998875443210                                  0      


Q ss_pred             HHHHhCCceeEEEEecCCCCHHHHHHHHHhcCCceEEeeccCCCCce
Q 014951          284 IREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSG  330 (415)
Q Consensus       284 ~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~  330 (415)
                            -+++.++++||+++++..+.+++.||+++++.||+|| +.+
T Consensus       212 ------~~~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~YG~tE-g~l  251 (430)
T TIGR02304       212 ------IKPKKVISVAEVLEPQDRELIRNVFKNTVHQIYQATE-GFL  251 (430)
T ss_pred             ------CCceEEEEccCCCCHHHHHHHHHHhCCCeeEccCCch-hhe
Confidence                  1689999999999999999999999999999999999 543

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=98.60  E-value=1.5e-05  Score=73.23  Aligned_cols=223  Identities=15%  Similarity=0.159  Sum_probs=124.2

Q ss_pred             CCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhhhhhhhccccCCCCCEEEEeCChhhH---HHH--HHHHHhhhcCc
Q 014951          125 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI---YDQ--IIETHCIHKGC  199 (415)
Q Consensus       125 ~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~---~~~--~~~~~~l~~G~  199 (415)
                      .++++..++-||||||.|--+.+.+..+..+..++...+..........-.++...|-...   .+.  ...+..+..+.
T Consensus        87 ~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~  166 (365)
T PF04443_consen   87 PEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGS  166 (365)
T ss_pred             ChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCc
Confidence            3566778899999999986677766666666655544432111111222334444443221   111  11222344555


Q ss_pred             EEEEeCC--CHHHHHHHHH----hhCCeEEEeCcHHHHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCcc
Q 014951          200 SIGFWRG--DVRYLMEDIQ----ELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAA  273 (415)
Q Consensus       200 ~vv~~~~--~~~~~~~~i~----~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (415)
                      ...+-..  +.+.++..+.    +.++..+++.|.++-.+...+........                            
T Consensus       167 ~~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~----------------------------  218 (365)
T PF04443_consen  167 RFALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFR----------------------------  218 (365)
T ss_pred             eeeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCccc----------------------------
Confidence            5333222  5666666554    45788899999877666554433211100                            


Q ss_pred             chhhHHHHHHHHHHhCCceeEEEEecC------CCC-HHHHHHHHHhcCC----ceEEeeccCCCCceeeeecCCccccc
Q 014951          274 PLLDSLVFSKIREAFGGRLQAMLSGAA------PLP-IHVEEFLRVTSGA----PLTQGYGLTESCSGCFTSLADVFNMI  342 (415)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~lr~v~~~G~------~~~-~~~~~~~~~~~~~----~~~~~yG~tE~~~~~~~~~~~~~~~~  342 (415)
                                    +.+..+.+-.||-      .++ ++..+.+++.+|+    .+++.|||||.....+....      
T Consensus       219 --------------L~~~s~vi~~GGwK~~~~e~v~r~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~------  278 (365)
T PF04443_consen  219 --------------LPKGSIVIHGGGWKGRRKEAVSREEFYARLQEVFGVIPIENIYDMYGMTELNSQAYECGH------  278 (365)
T ss_pred             --------------CCCCCEEEeCCCCCccccCccCHHHHHHHHHHHHCCCCHHHeeeeeeccccchhheeCCC------
Confidence                          0013445555553      354 4567778888887    69999999997654332211      


Q ss_pred             CcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhhhhhhcCCceecCceEEEcCC
Q 014951          343 GTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPM  413 (415)
Q Consensus       343 ~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~~~~~~g~~~TGDlg~~d~~  413 (415)
                      +.  .++|.- +.|.| +++ ..+++.|+.|-|.+-++... .|.            +..-|.|+|.+..+
T Consensus       279 ~~--~~~p~w-V~iRD-p~t-l~~~~~Ge~Gli~vidl~~~-s~p------------~~IlTeDlGvl~~~  331 (365)
T PF04443_consen  279 GH--FHVPPW-VIIRD-PET-LEPLPPGETGLIQVIDLANT-SYP------------GFILTEDLGVLHGD  331 (365)
T ss_pred             Cc--ccCCCe-EEEEC-CCC-CcCCCCCCeeEEEEEccccc-CCC------------cEEEEcceeeecCC
Confidence            11  112221 55557 443 46788889999988765332 222            23668999877654

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=97.01  E-value=0.0067  Score=59.22  Aligned_cols=32  Identities=25%  Similarity=0.148  Sum_probs=26.0

Q ss_pred             CCCCCCeEEEEecCCCCCC-CceEEeecHHHHH
Q 014951          123 PKKKTNISTIMYTSGTTGE-PKGVVLTNQAIVA  154 (415)
Q Consensus       123 ~~~~~~~~~i~~TSGtTG~-pK~v~~th~~l~~  154 (415)
                      ...++.+.++..||||||. +|-+++|...+..
T Consensus        76 vL~~~~~~~f~~TSGTTg~~~K~IP~T~~~l~~  108 (528)
T PF03321_consen   76 VLTPGPPIYFALTSGTTGGKSKLIPYTKEFLKE  108 (528)
T ss_dssp             CTSSS--SEEEEEEEEETTEEEEEEESHHHHHH
T ss_pred             CCCCCCCCeEEeCCCCCCCCCceeeccHHHHHH
Confidence            4556778999999999999 9999999987655

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>PRK09188 serine/threonine protein kinase; Provisional

Probab=95.91  E-value=0.0041  Score=57.38  Aligned_cols=20  Identities=20%  Similarity=0.109  Sum_probs=17.4

Q ss_pred             hhcCCceecCceEEE-cCCCC
Q 014951          396 VIVDGWFHTGDIGEW-QPMEL  415 (415)
Q Consensus       396 ~~~~g~~~TGDlg~~-d~~G~  415 (415)
                      .+.+|||+|||+|++ |+||+
T Consensus       205 ~~~dgW~~TGDlg~~~d~dG~  225 (365)
T PRK09188        205 LPSRIWLATGKKVYNFITRGL  225 (365)
T ss_pred             cccCcEEeCCCEEEEEcCCCe
Confidence            347999999999998 79986

>PLN02249 indole-3-acetic acid-amido synthetase

Probab=95.85  E-value=0.072  Score=52.50  Aligned_cols=30  Identities=27%  Similarity=0.312  Sum_probs=25.4

Q ss_pred             CCCCCeEEEEecCCCC-CCCceEEeecHHHH
Q 014951          124 KKKTNISTIMYTSGTT-GEPKGVVLTNQAIV  153 (415)
Q Consensus       124 ~~~~~~~~i~~TSGtT-G~pK~v~~th~~l~  153 (415)
                      ..++.+.++..||||| |.+|-|++|...+-
T Consensus        97 L~~~pi~~f~~SSGTT~g~~K~IP~T~~~l~  127 (597)
T PLN02249         97 LSSHPITEFLTSSGTSAGERKLMPTIEEDID  127 (597)
T ss_pred             eCCCchhhhcccCCCCCCceeEEeccHHHHH
Confidence            4467778899999999 88999999997665

>PLN02247 indole-3-acetic acid-amido synthetase

Probab=95.54  E-value=0.52  Score=46.43  Aligned_cols=32  Identities=25%  Similarity=0.407  Sum_probs=26.3

Q ss_pred             CCCCeEEEEecCCCCC-CCceEEeecHHHHHHh
Q 014951          125 KKTNISTIMYTSGTTG-EPKGVVLTNQAIVAEV  156 (415)
Q Consensus       125 ~~~~~~~i~~TSGtTG-~pK~v~~th~~l~~~~  156 (415)
                      .+..+.++.-|||||| .+|-|++|+..+-...
T Consensus        87 t~~pi~~F~~SSGTT~g~~K~IP~t~e~l~~~~  119 (606)
T PLN02247         87 SAQPITELLTSSGTSGGQPKLMPSTAEELDRKT  119 (606)
T ss_pred             CCCCcceeeccCCCCCCceeEeeccHHHHHHHH
Confidence            3677788999999995 8999999998765543

>PLN02620 indole-3-acetic acid-amido synthetase

Probab=95.09  E-value=1.9  Score=42.60  Aligned_cols=32  Identities=25%  Similarity=0.258  Sum_probs=26.0

Q ss_pred             CCCCCeEEEEecCCCCC-CCceEEeecHHHHHH
Q 014951          124 KKKTNISTIMYTSGTTG-EPKGVVLTNQAIVAE  155 (415)
Q Consensus       124 ~~~~~~~~i~~TSGtTG-~pK~v~~th~~l~~~  155 (415)
                      ..+..+.++.-|||||| .+|-+++|+..+-..
T Consensus        98 L~~~pi~~F~~SSGTT~g~~K~IP~t~e~l~~~  130 (612)
T PLN02620         98 LCSKPISEFLTSSGTSGGERKLMPTIEEELGRR  130 (612)
T ss_pred             cCCCChhhhhhcCCCCCCceeeeecCHHHHHHH
Confidence            34566778999999997 599999999977653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	415
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		2e-18
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		7e-14
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		8e-13
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		1e-12
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		1e-12
3t5b_A	396	Crystal Structure Of N-Terminal Domain Of Facl13 Fr		4e-12
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		6e-12
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		9e-12
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		1e-11
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		1e-11
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		1e-11
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		4e-11
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		5e-11
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		5e-11
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		2e-09
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		2e-09
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		2e-09
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		2e-08
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		1e-07
3g7s_A	549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		1e-07
3ipl_A	501	Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig		4e-07
3pbk_A	583	Structural And Functional Studies Of Fatty Acyl-Ade		8e-05

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 100/351 (28%), Positives = 141/351 (40%), Gaps = 82/351 (23%)
Query: 89  NVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPK----------------------KK 126
           N  S  K+ A  L  S  S    L L   D ELPP                         
Sbjct: 99  NPKSGDKELAHILSDSAPS----LVLAPPDAELPPALGALERVDVDVRARGAVPEDGADD 154
Query: 127 TNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY 186
            + + ++YTSGTTG PKG V+  +A+   + ++   +  TG     ED     LPL H++
Sbjct: 155 GDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTG-----EDVLVQGLPLFHVH 209
Query: 187 DQIIET-HCIHKGCSIGFWRGDVRYLMEDI-QELK--PTMFSGVPRVYDRIYTGISNKIS 242
             ++     + +G S+   R   R+  E   +EL    TM  GVP +Y RI    +  + 
Sbjct: 210 GLVLGILGPLRRGGSV---RHLGRFSTEGAARELNDGATMLFGVPTMYHRI----AETLP 262
Query: 243 SGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPL 302
           +   L+K L                                     G RL  ++SG+A L
Sbjct: 263 ADPELAKALA------------------------------------GARL--LVSGSAAL 284
Query: 303 PIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEM 362
           P+H  E +   +G  + + YG+TE+        AD     GTVGVP+  VE RL      
Sbjct: 285 PVHDHERIAAATGRRVIERYGMTETLMNTSVR-ADGEPRAGTVGVPLPGVELRLVEEDGT 343
Query: 363 GYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHTGDIGEWQP 412
              AL     GEI +RG  LF+ Y  RPD T      DG+F TGD+    P
Sbjct: 344 PIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDP 394

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 102/429 (23%), Positives = 163/429 (37%), Gaps = 87/429 (20%)
Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           +R+ GV  GDR    G N    + A  A              L    + +I+NHAE  + 
Sbjct: 64  LRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVL 123
Query: 61  FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE 120
               N +P + +        LKT+  F  +     +          ++EE L        
Sbjct: 124 LFDPNLLPLVEAIRGE----LKTVQHFVVMDEKAPE-------GYLAYEEALGEEADPVR 172
Query: 121 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 180
           +P +    ++   YT+GTTG PKGVV +++A+V   L+     +V G   SE+D     +
Sbjct: 173 VPERAACGMA---YTTGTTGLPKGVVYSHRALVLHSLAAS---LVDGTALSEKDVVLPVV 226
Query: 181 PLAHIYDQIIETHCIHKGCS--IGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGIS 238
           P+ H+    +       G    +   R D   L+E       T  +GVP V    +  ++
Sbjct: 227 PMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTV----WLALA 282
Query: 239 NKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSG 298
           + + S G            ++L  +++ +    AAP   SL+          R + M   
Sbjct: 283 DYLESTG------------HRLKTLRRLVVGGSAAP--RSLI---------ARFERM--- 316
Query: 299 AAPLPIHVEEFLRVTSGAPLTQGYGLTES--------CSGCFTSLA--DVFNMIGTVGVP 348
                           G  + QGYGLTE+              SL+  +   +    G+P
Sbjct: 317 ----------------GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLP 360
Query: 349 MTTVEARLESVPEMGYDALSSVPR-----GEICLRGNTLFSGYYKRPDLTEEVIV-DGWF 402
           +  V  RL    E G      VP+     GE+ L+G  +  GYY   + T   +  DG+F
Sbjct: 361 IPLV--RLRVADEEG----RPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFF 414
Query: 403 HTGDIGEWQ 411
            TGDI  W 
Sbjct: 415 RTGDIAVWD 423

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score = 71.6 bits (174), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 106/421 (25%), Positives = 162/421 (38%), Gaps = 88/421 (20%)
Query: 5   GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE 64
           GVN  D   +   NCPE++++  A + +  T         A A       AE++      
Sbjct: 109 GVNQNDVVMLLLPNCPEFVLSFLAASFRGAT---------ATAANPFFTPAEIAKQAKAS 159
Query: 65  NKIPSILSCLPRCCLYLKTIVSFAN-----VSSSQKKEAEELGVSCFSWEEFLQLGTLDC 119
           N    I         Y+  I    N     +      E+  +   C  + E  Q  T   
Sbjct: 160 NTKLIITEAR-----YVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFTELTQSTTEAS 214
Query: 120 ELPPK---KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGK----VCSE 172
           E+         ++  + Y+SGTTG PKGV+LT++ +V    SV Q   V G+        
Sbjct: 215 EVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVT---SVAQQ--VDGENPNLYFHS 269
Query: 173 EDTYFSFLPLAHIYDQIIETHC-IHKGCSIGFW-RGDVRYLMEDIQELKPTMFSGVPRVY 230
           +D     LP+ HIY       C +  G +I    + ++  L+E IQ  K T+   VP   
Sbjct: 270 DDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVP--- 326
Query: 231 DRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFG- 289
                                                      P++ ++  S   E +  
Sbjct: 327 -------------------------------------------PIVLAIAKSSETEKYDL 343
Query: 290 GRLQAMLSGAAPLPIHVEEFLRVT-SGAPLTQGYGLTESCSGCFTSLA---DVFNMI-GT 344
             ++ + SGAAPL   +E+ +      A L QGYG+TE+      SL    + F +  G 
Sbjct: 344 SSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGA 403
Query: 345 VGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFH 403
            G  +   E ++   P+ G D+LS    GEIC+RG+ +  GY   P  T E I  DGW H
Sbjct: 404 CGTVVRNAEMKIVD-PDTG-DSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLH 461
Query: 404 T 404
           T
Sbjct: 462 T 462

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 95/442 (21%), Positives = 162/442 (36%), Gaps = 106/442 (23%)
Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           M+  G+N   R  +   N  ++ + +       +   P  D      +   +N ++ ++ 
Sbjct: 72  MKRYGLNTNHRIVVSSENSLQFFMPVLGALFIGVAVAPANDCYNERELLNSMNISQPTVV 131
Query: 61  FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT-LDC 119
           FV +  +  IL+   +  +  K I+  +                   ++ F  + T +  
Sbjct: 132 FVSKKGLQKILNVQKKLPIIQKIIIMDSKTD----------------YQGFQSMYTFVTS 175
Query: 120 ELPP------------KKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSV-DQMFVVT 166
            LPP             +   I+ IM +SG+TG PKGV L ++A+        D +F   
Sbjct: 176 HLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRALAVRFSHARDPIF--- 232
Query: 167 GKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGF-WRGDVRYLMEDIQELK------ 219
           G   + +    S +P  H +        +  G  +   +R +    +  +Q+ K      
Sbjct: 233 GNQIAPDTAILSVVPFHHGFGMFTTLGYLISGFRVVLMYRFEEELFLRSLQDYKIQSALL 292
Query: 220 -PTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDS 278
            PT+FS + +                                            + L+D 
Sbjct: 293 VPTLFSFLAK--------------------------------------------STLIDK 308
Query: 279 LVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LTQGYGLTESCSGCF-TSLA 336
              S + E        + SG APL   V E +      P + QGYGLTE+ S    T   
Sbjct: 309 YDLSNLHE--------IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPKG 360
Query: 337 DVFNMIGTVGVPMTTVEAR---LESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLT 393
           D  +  G VG  +   EA+   L++   +G +      RGE+ +RG  + SGY   P+ T
Sbjct: 361 D--DKPGAVGKVVPFFEAKVVDLDTGKTLGVNQ-----RGELSVRGPMIMSGYVNNPEAT 413
Query: 394 EEVI-VDGWFHTGDIGEWQPME 414
             +I  DGW H+GDI  W   E
Sbjct: 414 NALIDKDGWLHSGDIAYWDEDE 435

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 103/420 (24%), Positives = 163/420 (38%), Gaps = 94/420 (22%)
Query: 5   GVNPGDRCGIYGSNCPEWIIAMEACNSQA--ITYVPLYDTLGANAVEFIINHAEVSIAFV 62
           G+  GD   ++  + PE+++A    + +   IT    + T    A      HA+ S A +
Sbjct: 70  GIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELA-----KHAKASRAKL 124
Query: 63  QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP 122
                      + + C Y K +  FA  S  +    +     C  + E  Q    +    
Sbjct: 125 ----------LITQACYYEK-VKDFARESDVKVMCVDSAPDGCLHFSELTQADENEAPQV 173
Query: 123 PKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGK----VCSEEDTYFS 178
                ++  + Y+SGTTG PKGV+LT++ ++    SV Q   V G         ED    
Sbjct: 174 DISPDDVVALPYSSGTTGLPKGVMLTHKGLIT---SVAQQ--VDGDNPNLYFHSEDVILC 228
Query: 179 FLPLAHIYDQIIETHCIHKGCSIG-----FWRGDVRYLMEDIQELKPTMFSGVPRVYDRI 233
            LP+ HIY       C   G  +G       + ++  L+  I++ K ++   VP V   I
Sbjct: 229 VLPMFHIYALNSIMLC---GLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSI 285
Query: 234 YTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQ 293
                                                  +P LD    S +R        
Sbjct: 286 -------------------------------------AKSPDLDKHDLSSLR-------- 300
Query: 294 AMLSGAAPLPIHVEEFLRVT-SGAPLTQGYGLTES---CSGCFTSLADVFNMI-GTVGVP 348
            + SG APL   +E+ +R     A L QGYG+TE+    + C     + F++  G  G  
Sbjct: 301 MIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTV 360
Query: 349 MTTVEARLESVPEMGYDALSSVPR---GEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHT 404
           +   E ++   PE G    +S+PR   GEIC+RG+ +  GY   P+ T   I  +GW HT
Sbjct: 361 VRNAEMKIVD-PETG----ASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHT 415

>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 93/416 (22%), Positives = 153/416 (36%), Gaps = 91/416 (21%)
Query: 5   GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE 64
           G+  GDR  +   N  E+              VP+   L A  V FI++ +   +     
Sbjct: 50  GIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGA 109
Query: 65  NKIPSILSCLPRCCLYLKTIVSFANVSSSQKK----EAEELGVSCFSWEEFLQLGTLDCE 120
              P ++  +        T+  +    S  ++     A+E  V C   +           
Sbjct: 110 PSAP-VIDAIRAQADPPGTVTDWIGADSLAERLRSAAADEPAVECGGDDNLF-------- 160
Query: 121 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 180
                      IMYTSGTTG PKGVV T++++ +   S      V  +     D     L
Sbjct: 161 -----------IMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYR-----DRLLLPL 204
Query: 181 PLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNK 240
           P+ H+           +G ++                +    F    +V+  I   +  +
Sbjct: 205 PMFHVAALTTVIFSAMRGVTL----------------ISMPQFDAT-KVWSLI---VEER 244
Query: 241 ISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAA 300
           +  GGA+   L          N  + +P+      LD+  F           +  ++G A
Sbjct: 245 VCIGGAVPAIL----------NFMRQVPEFAE---LDAPDF-----------RYFITGGA 280
Query: 301 PLPIHVEEFLRVTSGAPL--TQGYGLTESCSGCFTSLA-DVFNMIGTVG--VPMTTVEAR 355
           P+P   E  +++ +   +   QGY LTESC G    L+ D     G+ G     T V  R
Sbjct: 281 PMP---EALIKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVR 337
Query: 356 LES--VPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGE 409
            +   + E G         GE+ ++ + L   Y+ RP+ T +   +GWF TGDIGE
Sbjct: 338 GDDGVIREHG--------EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGE 385

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 93/416 (22%), Positives = 153/416 (36%), Gaps = 91/416 (21%)
Query: 5   GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE 64
           G+  GDR  +   N  E+              VP+   L A  V FI++ +   +     
Sbjct: 64  GIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGA 123
Query: 65  NKIPSILSCLPRCCLYLKTIVSFANVSSSQKK----EAEELGVSCFSWEEFLQLGTLDCE 120
              P ++  +        T+  +    S  ++     A+E  V C   +           
Sbjct: 124 PSAP-VIDAIRAQADPPGTVTDWIGADSLAERLRSAAADEPAVECGGDDNLF-------- 174
Query: 121 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 180
                      IMYTSGTTG PKGVV T++++ +   S      V  +     D     L
Sbjct: 175 -----------IMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYR-----DRLLLPL 218
Query: 181 PLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNK 240
           P+ H+           +G ++                +    F    +V+  I   +  +
Sbjct: 219 PMFHVAALTTVIFSAMRGVTL----------------ISMPQFDAT-KVWSLI---VEER 258
Query: 241 ISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAA 300
           +  GGA+   L          N  + +P+      LD+  F           +  ++G A
Sbjct: 259 VCIGGAVPAIL----------NFMRQVPEFAE---LDAPDF-----------RYFITGGA 294
Query: 301 PLPIHVEEFLRVTSGAPL--TQGYGLTESCSGCFTSLA-DVFNMIGTVG--VPMTTVEAR 355
           P+P   E  +++ +   +   QGY LTESC G    L+ D     G+ G     T V  R
Sbjct: 295 PMP---EALIKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVR 351
Query: 356 LES--VPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGE 409
            +   + E G         GE+ ++ + L   Y+ RP+ T +   +GWF TGDIGE
Sbjct: 352 GDDGVIREHG--------EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGE 399

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score = 67.8 bits (164), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 99/435 (22%), Positives = 162/435 (37%), Gaps = 92/435 (21%)
Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           M+  G+N   R  +   N  ++ + +       +   P  D      +   +N ++ ++ 
Sbjct: 72  MKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVV 131
Query: 61  FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT-LDC 119
           FV +  +  IL+   +  +  K I+  +                   ++ F  + T +  
Sbjct: 132 FVSKKGLQKILNVQKKLPIIQKIIIMDSKTD----------------YQGFQSMYTFVTS 175
Query: 120 ELPP------------KKKTNISTIMYTSGTTGEPKGVVLTNQ-AIVAEVLSVDQMFVVT 166
            LPP             +   I+ IM +SG+TG PKGV L ++ A V    + D +F   
Sbjct: 176 HLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIF--- 232
Query: 167 GKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGF-WRGDVRYLMEDIQELKPTMFSG 225
           G     +    S +P  H +        +  G  +   +R +    +  +Q+ K      
Sbjct: 233 GNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYK------ 286
Query: 226 VPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIR 285
                          I S   L   LF F                  + L+D    S + 
Sbjct: 287 ---------------IQSA-LLVPTLFSFF---------------AKSTLIDKYDLSNLH 315
Query: 286 EAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LTQGYGLTESCSGCF-TSLADVFNMIG 343
           E        + SG APL   V E +      P + QGYGLTE+ S    T   D  +  G
Sbjct: 316 E--------IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGD--DKPG 365
Query: 344 TVGVPMTTVEAR---LESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VD 399
            VG  +   EA+   L++   +G +      RGE+C+RG  + SGY   P+ T  +I  D
Sbjct: 366 AVGKVVPFFEAKVVDLDTGKTLGVNQ-----RGELCVRGPMIMSGYVNNPEATNALIDKD 420
Query: 400 GWFHTGDIGEWQPME 414
           GW H+GDI  W   E
Sbjct: 421 GWLHSGDIAYWDEDE 435

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 99/435 (22%), Positives = 162/435 (37%), Gaps = 92/435 (21%)
Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           M+  G+N   R  +   N  ++ + +       +   P  D      +   +N ++ ++ 
Sbjct: 67  MKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVV 126
Query: 61  FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT-LDC 119
           FV +  +  IL+   +  +  K I+  +                   ++ F  + T +  
Sbjct: 127 FVSKKGLQKILNVQKKLPIIQKIIIMDSKTD----------------YQGFQSMYTFVTS 170
Query: 120 ELPP------------KKKTNISTIMYTSGTTGEPKGVVLTNQ-AIVAEVLSVDQMFVVT 166
            LPP             +   I+ IM +SG+TG PKGV L ++ A V    + D +F   
Sbjct: 171 HLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIF--- 227
Query: 167 GKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGF-WRGDVRYLMEDIQELKPTMFSG 225
           G     +    S +P  H +        +  G  +   +R +    +  +Q+ K      
Sbjct: 228 GNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYK------ 281
Query: 226 VPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIR 285
                          I S   L   LF F                  + L+D    S + 
Sbjct: 282 ---------------IQSA-LLVPTLFSFF---------------AKSTLIDKYDLSNLH 310
Query: 286 EAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LTQGYGLTESCSGCF-TSLADVFNMIG 343
           E        + SG APL   V E +      P + QGYGLTE+ S    T   D  +  G
Sbjct: 311 E--------IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGD--DKPG 360
Query: 344 TVGVPMTTVEAR---LESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VD 399
            VG  +   EA+   L++   +G +      RGE+C+RG  + SGY   P+ T  +I  D
Sbjct: 361 AVGKVVPFFEAKVVDLDTGKTLGVNQ-----RGELCVRGPMIMSGYVNNPEATNALIDKD 415
Query: 400 GWFHTGDIGEWQPME 414
           GW H+GDI  W   E
Sbjct: 416 GWLHSGDIAYWDEDE 430

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 99/435 (22%), Positives = 162/435 (37%), Gaps = 92/435 (21%)
Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           M+  G+N   R  +   N  ++ + +       +   P  D      +   +N ++ ++ 
Sbjct: 67  MKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVV 126
Query: 61  FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT-LDC 119
           FV +  +  IL+   +  +  K I+  +                   ++ F  + T +  
Sbjct: 127 FVSKKGLQKILNVQKKLPIIQKIIIMDSKTD----------------YQGFQSMYTFVTS 170
Query: 120 ELPP------------KKKTNISTIMYTSGTTGEPKGVVLTNQ-AIVAEVLSVDQMFVVT 166
            LPP             +   I+ IM +SG+TG PKGV L ++ A V    + D +F   
Sbjct: 171 HLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIF--- 227
Query: 167 GKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGF-WRGDVRYLMEDIQELKPTMFSG 225
           G     +    S +P  H +        +  G  +   +R +    +  +Q+ K      
Sbjct: 228 GNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYK------ 281
Query: 226 VPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIR 285
                          I S   L   LF F                  + L+D    S + 
Sbjct: 282 ---------------IQSA-LLVPTLFSFF---------------AKSTLIDKYDLSNLH 310
Query: 286 EAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LTQGYGLTESCSGCF-TSLADVFNMIG 343
           E        + SG APL   V E +      P + QGYGLTE+ S    T   D  +  G
Sbjct: 311 E--------IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGD--DKPG 360
Query: 344 TVGVPMTTVEAR---LESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VD 399
            VG  +   EA+   L++   +G +      RGE+C+RG  + SGY   P+ T  +I  D
Sbjct: 361 AVGKVVPFFEAKVVDLDTGKTLGVNQ-----RGELCVRGPMIMSGYVNNPEATNALIDKD 415
Query: 400 GWFHTGDIGEWQPME 414
           GW H+GDI  W   E
Sbjct: 416 GWLHSGDIAYWDEDE 430

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 86/413 (20%), Positives = 156/413 (37%), Gaps = 80/413 (19%)
Query: 3   SRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFV 62
           +RG+  GDR         E ++   A       Y+PL      + +++ I  AE      
Sbjct: 47  ARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAE------ 100
Query: 63  QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP 122
                P I+ C P     +  I +    +           ++  +        T+D    
Sbjct: 101 -----PKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLTDAAAGASEAFATID---- 151
Query: 123 PKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL 182
            +   +++ I+YTSGTTG  KG  L++  + +  L++   +  T      +D     LP+
Sbjct: 152 -RGADDLAAILYTSGTTGRSKGAXLSHDNLASNSLTLVDYWRFT-----PDDVLIHALPI 205
Query: 183 AHIYDQIIETHC--IHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNK 240
            H +   + ++     +G  I   + D   +++     + T+  GVP  Y R+       
Sbjct: 206 YHTHGLFVASNVTLFARGSXIFLPKFDPDKILD--LXARATVLXGVPTFYTRL------- 256
Query: 241 ISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAA 300
                                                 L   ++ +   G  +  +SG+A
Sbjct: 257 --------------------------------------LQSPRLTKETTGHXRLFISGSA 278
Query: 301 PLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVP 360
           PL           +G  + + YG TE+     ++  D   + G VG  +  V AR+   P
Sbjct: 279 PLLADTHREWSAKTGHAVLERYGXTETNXNT-SNPYDGDRVPGAVGPALPGVSARVTD-P 336
Query: 361 EMGYDALSSVPRGEIC---LRGNTLFSGYYKRPDLTE-EVIVDGWFHTGDIGE 409
           E G      +PRG+I    ++G  +F GY++ P+ T+ E   DG+F TGD+G+
Sbjct: 337 ETG----KELPRGDIGXIEVKGPNVFKGYWRXPEKTKSEFRDDGFFITGDLGK 385

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 115/290 (39%), Gaps = 53/290 (18%)
Query: 125 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH 184
           +K  ++ IM +SG+TG PKGV LT++ IV           + G   S      + +P  H
Sbjct: 190 RKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDP--IYGNQVSPGTAVLTVVPFHH 247
Query: 185 IYDQIIETHCIHKGCSIGFW-RGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISS 243
            +        +  G  +    + D    ++ +Q+ K T    VP ++      I NK   
Sbjct: 248 GFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLF-----AILNK--- 299
Query: 244 GGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLP 303
                    E    Y L N                             L  + SG APL 
Sbjct: 300 --------SELLNKYDLSN-----------------------------LVEIASGGAPLS 322
Query: 304 IHVEEFLRVTSGAP-LTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEM 362
             V E +      P + QGYGLTE+ S    +  +  +  G  G  +   +A++  +   
Sbjct: 323 KEVGEAVARRFNLPGVRQGYGLTETTSAIIIT-PEGDDKPGASGKVVPLFKAKVIDLDTK 381
Query: 363 GYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQ 411
              +L    RGE+C++G  L  GY   P+ T+E+I  +GW HTGDIG + 
Sbjct: 382 --KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYD 429

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 115/290 (39%), Gaps = 53/290 (18%)
Query: 125 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH 184
           +K  ++ IM +SG+TG PKGV LT++ IV           + G   S      + +P  H
Sbjct: 190 RKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDP--IYGNQVSPGTAVLTVVPFHH 247
Query: 185 IYDQIIETHCIHKGCSIGFW-RGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISS 243
            +        +  G  +    + D    ++ +Q+ K T    VP ++      I NK   
Sbjct: 248 GFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTNVILVPTLF-----AILNK--- 299
Query: 244 GGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLP 303
                    E    Y L N                             L  + SG APL 
Sbjct: 300 --------SELLNKYDLSN-----------------------------LVEIASGGAPLS 322
Query: 304 IHVEEFLRVTSGAP-LTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEM 362
             V E +      P + QGYGLTE+ S    +  +  +  G  G  +   +A++  +   
Sbjct: 323 KEVGEAVARRFNLPGVRQGYGLTETTSAIIIT-PEGDDKPGASGKVVPLFKAKVIDLDTK 381
Query: 363 GYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQ 411
              +L    RGE+C++G  L  GY   P+ T+E+I  +GW HTGDIG + 
Sbjct: 382 --KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYD 429

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 115/290 (39%), Gaps = 53/290 (18%)
Query: 125 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH 184
           +K  ++ IM +SG+TG PKGV LT++ IV           + G   S      + +P  H
Sbjct: 190 RKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDP--IYGNQVSPGTAVLTVVPFHH 247
Query: 185 IYDQIIETHCIHKGCSIGFW-RGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISS 243
            +        +  G  +    + D    ++ +Q+ K T    VP ++      I NK   
Sbjct: 248 GFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLF-----AILNK--- 299
Query: 244 GGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLP 303
                    E    Y L N                             L  + SG APL 
Sbjct: 300 --------SELLNKYDLSN-----------------------------LVEIASGGAPLS 322
Query: 304 IHVEEFLRVTSGAP-LTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEM 362
             V E +      P + QGYGLTE+ S    +  +  +  G  G  +   +A++  +   
Sbjct: 323 KEVGEAVARRFNLPGVRQGYGLTETTSAIIIT-PEGDDKPGASGKVVPLFKAKVIDLDTK 381
Query: 363 GYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQ 411
              +L    RGE+C++G  L  GY   P+ T+E+I  +GW HTGDIG + 
Sbjct: 382 --KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYD 429

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 90/417 (21%), Positives = 158/417 (37%), Gaps = 90/417 (21%)
Query: 3   SRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFV 62
           +RG+  GDR         E ++   A       Y+PL      + +++ I  AE      
Sbjct: 47  ARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAE------ 100
Query: 63  QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP 122
                P I+ C P     +  I +    +           ++  +        T+D    
Sbjct: 101 -----PXIVVCDPSXRDGIAAIAAXVGATVETLGPDGRGSLTDAAAGASEAFATID---- 151
Query: 123 PKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL 182
            +   +++ I+YTSGTTG   G +L++  + +  L++   +  T      +D     LP+
Sbjct: 152 -RGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFT-----PDDVLIHALPI 205
Query: 183 AHIYDQIIETHCIHKGCSIG-FWRGDVRYLM----EDIQEL--KPTMFSGVPRVYDRIYT 235
            H       TH +    ++  F RG + +L     + I +L  + T+  GVP  Y R+  
Sbjct: 206 YH-------THGLFVASNVTLFARGSMIFLPXFDPDXILDLMARATVLMGVPTFYTRL-- 256
Query: 236 GISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAM 295
                                                      L   ++     G ++  
Sbjct: 257 -------------------------------------------LQSPRLTXETTGHMRLF 273
Query: 296 LSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEAR 355
           +SG+APL           +G  + + YG+TE+     ++  D   + G VG  +  V AR
Sbjct: 274 ISGSAPLLADTHREWSAXTGHAVLERYGMTETNMNT-SNPYDGDRVPGAVGPALPGVSAR 332
Query: 356 LESVPEMGYDALSSVPRGEICL---RGNTLFSGYYKRPDLT-EEVIVDGWFHTGDIG 408
           +   PE G +    +PRG+I +    G  +F GY++ P+ T  E   DG+F TGD+G
Sbjct: 333 VTD-PETGXE----LPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLG 384

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 90/417 (21%), Positives = 158/417 (37%), Gaps = 90/417 (21%)
Query: 3   SRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFV 62
           +RG+  GDR         E ++   A       Y+PL      + +++ I  AE      
Sbjct: 47  ARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAE------ 100
Query: 63  QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP 122
                P I+ C P     +  I +    +           ++  +        T+D    
Sbjct: 101 -----PXIVVCDPSXRDGIAAIAAXVGATVETLGPDGRGSLTDAAAGASEAFATID---- 151
Query: 123 PKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL 182
            +   +++ I+YTSGTTG   G +L++  + +  L++   +  T      +D     LP+
Sbjct: 152 -RGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFT-----PDDVLIHALPI 205
Query: 183 AHIYDQIIETHCIHKGCSIG-FWRGDVRYLM----EDIQEL--KPTMFSGVPRVYDRIYT 235
            H       TH +    ++  F RG + +L     + I +L  + T+  GVP  Y R+  
Sbjct: 206 YH-------THGLFVASNVTLFARGSMIFLPXFDPDXILDLMARATVLMGVPTFYTRL-- 256
Query: 236 GISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAM 295
                                                      L   ++     G ++  
Sbjct: 257 -------------------------------------------LQSPRLTXETTGHMRLF 273
Query: 296 LSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEAR 355
           +SG+APL           +G  + + YG+TE+     ++  D   + G VG  +  V AR
Sbjct: 274 ISGSAPLLADTHREWSAXTGHAVLERYGMTETNMNT-SNPYDGDRVPGAVGPALPGVSAR 332
Query: 356 LESVPEMGYDALSSVPRGEICL---RGNTLFSGYYKRPDLT-EEVIVDGWFHTGDIG 408
           +   PE G +    +PRG+I +    G  +F GY++ P+ T  E   DG+F TGD+G
Sbjct: 333 VTD-PETGXE----LPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLG 384

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 90/417 (21%), Positives = 158/417 (37%), Gaps = 90/417 (21%)
Query: 3   SRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFV 62
           +RG+  GDR         E ++   A       Y+PL      + +++ I  AE      
Sbjct: 47  ARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAE------ 100
Query: 63  QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP 122
                P I+ C P     +  I +    +           ++  +        T+D    
Sbjct: 101 -----PXIVVCDPSXRDGIAAIAAXVGATVETLGPDGRGSLTDAAAGASEAFATID---- 151
Query: 123 PKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL 182
            +   +++ I+YTSGTTG   G +L++  + +  L++   +  T      +D     LP+
Sbjct: 152 -RGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFT-----PDDVLIHALPI 205
Query: 183 AHIYDQIIETHCIHKGCSIG-FWRGDVRYLM----EDIQEL--KPTMFSGVPRVYDRIYT 235
            H       TH +    ++  F RG + +L     + I +L  + T+  GVP  Y R+  
Sbjct: 206 YH-------THGLFVASNVTLFARGSMIFLPXFDPDXILDLMARATVLMGVPTFYTRL-- 256
Query: 236 GISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAM 295
                                                      L   ++     G ++  
Sbjct: 257 -------------------------------------------LQSPRLTXETTGHMRLF 273
Query: 296 LSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEAR 355
           +SG+APL           +G  + + YG+TE+     ++  D   + G VG  +  V AR
Sbjct: 274 ISGSAPLLADTHREWSAXTGHAVLERYGMTETNMNT-SNPYDGDRVPGAVGPALPGVSAR 332
Query: 356 LESVPEMGYDALSSVPRGEICL---RGNTLFSGYYKRPDLT-EEVIVDGWFHTGDIG 408
           +   PE G +    +PRG+I +    G  +F GY++ P+ T  E   DG+F TGD+G
Sbjct: 333 VTD-PETGXE----LPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLG 384

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 114/293 (38%), Gaps = 60/293 (20%)
Query: 125 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSV-DQMFVVTGKVCSEEDTYFSFLPLA 183
           ++T  + IM +SG+TG PKGV LT++ I        D +F   G     +    + +P  
Sbjct: 222 RETATALIMNSSGSTGLPKGVELTHKNICVRFSHCRDPVF---GNQIIPDTAILTVIPFH 278
Query: 184 HIYDQIIETHCIHKGCSIGF-WRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKIS 242
           H +        +  G  I   +R +    +  +Q+ K                     I 
Sbjct: 279 HGFGMFTTLGYLTCGFRIVLMYRFEEELFLRSLQDYK---------------------IQ 317
Query: 243 SGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPL 302
           S   L   LF F                  + L+D    S + E        + SG APL
Sbjct: 318 SA-LLVPTLFSFF---------------AKSTLVDKYDLSNLHE--------IASGGAPL 353
Query: 303 PIHVEEFLRVTSGAP-LTQGYGLTESCSGCFTSLADVFNMIGTVG--VPMTTVE-ARLES 358
              V E +      P + QGYGLTE+ S    +     +  G  G  VP  + +   L++
Sbjct: 354 AKEVGEAVAKRFKLPGIRQGYGLTETTSAIIITPRGRDDKPGACGKVVPFFSAKIVDLDT 413
Query: 359 VPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEW 410
              +G +      RGE+C++G  +  GY   P+ T  +I  DGW H+GDI  +
Sbjct: 414 GKTLGVNQ-----RGELCVKGPMIMKGYVNNPEATSALIDKDGWLHSGDIAYY 461

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 89/416 (21%), Positives = 148/416 (35%), Gaps = 90/416 (21%)
Query: 5   GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE 64
           GV+ GDR  I   NC E I  + A        +P+   L A+ + F++     S+     
Sbjct: 52  GVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGT 111
Query: 65  NKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT-LDCELPP 123
           +    +   LP          S   V     K+A  +G     +  F  L +      P 
Sbjct: 112 DYRDIVAGVLP----------SLGGV-----KKAYAIGDGSGPFAPFKDLASDTPFSAPE 156
Query: 124 KKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA 183
               +   I++T+   G P+G +++   ++     + Q  +V     +E D     LPL 
Sbjct: 157 FGAADGFVIIHTAAVGGRPRGALISQGNLL-----IAQSSLVDAWRLTEADVNLGMLPLF 211
Query: 184 HIYD-QIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKIS 242
           H+    ++ T     G S+   + D      DI+  K T+ +                  
Sbjct: 212 HVTGLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMA------------------ 253
Query: 243 SGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPL 302
                     EFA    LGN+      ++AAP       + +R   G             
Sbjct: 254 ----------EFA--PMLGNI-----LDQAAPAQ----LASLRAVTG----------LDT 282
Query: 303 PIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPM-----TTVEARLE 357
           P  +E F      A     +G +E+     ++ A   +   + G P+       V+A   
Sbjct: 283 PETIERFEATCPNATFWATFGQSETSG--LSTFAPYRDRPKSAGRPLFWRTVAVVDAEDR 340
Query: 358 SVP--EMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQ 411
            +P  E+G          EI LRG T+F GY+     T+    +GW HTGD+G + 
Sbjct: 341 PLPPGEVG----------EIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFD 386

>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 99/426 (23%), Positives = 168/426 (39%), Gaps = 88/426 (20%)
Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           +  +GV  G+  G+   N  +++  + A    A T VP+     +  +E I+N +E +  
Sbjct: 69  ISRKGVRKGEHVGVCIPNSIDYVXTIYALWRVAATPVPINPXYKSFELEHILNDSEATTL 128
Query: 61  FVQ----ENKIPSILSC-LPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLG 115
            V     EN  P +    + R  +    + S + V  S  ++ E + V+           
Sbjct: 129 VVHSXLYENFKPVLEKTGVERVFVVGGEVNSLSEVXDSGSEDFENVKVN----------- 177
Query: 116 TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDT 175
                     + +++ I YT GTTG PKGV LT+  + A  L   Q+ V TG   S  DT
Sbjct: 178 ---------PEEDVALIPYTGGTTGXPKGVXLTHFNLAANAL---QLAVATG--LSHXDT 223
Query: 176 YFSFLPLAHIYDQIIETHCIHKGCS-IGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIY 234
                P  H  +  +    +  G   +     +   L E+I++ K T    VP   + + 
Sbjct: 224 IVGCXPXFHSAEFGLVNLXVTVGNEYVVXGXFNQEXLAENIEKYKGTFSWAVPPALNVLV 283
Query: 235 TGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQA 294
             + +        S K ++++Y                                   L+ 
Sbjct: 284 NTLES--------SNKTYDWSY-----------------------------------LKV 300
Query: 295 MLSGAAPL-PIHVEEFLRVTS---GAPL---TQGYGLTESCSGCFTSLADVFNMIGTVGV 347
             +GA P+ P  VE+ L++ +     P     Q +G TE+C    T+     +   T GV
Sbjct: 301 FATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGXTEACPXVTTNPPLRLDKSTTQGV 360
Query: 348 PMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-----DGWF 402
           P + +E ++ S+ E G + L     GEI +RG  +F GY+KR    +E          +F
Sbjct: 361 PXSDIELKVISL-EDGRE-LGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFF 418
Query: 403 HTGDIG 408
            TGD+G
Sbjct: 419 RTGDVG 424

>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 122/284 (42%), Gaps = 65/284 (22%)
Query: 128 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDT-YFSFLPLAHIY 186
           +I++IM+TSGTTG  K V  T +   A  +   +       +  + DT + S LP+ HI 
Sbjct: 164 DIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKE------SLGFDRDTNWLSVLPIYHIS 217
Query: 187 DQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGA 246
              +    + +G ++                          R+ D+              
Sbjct: 218 GLSVLLRAVIEGFTV--------------------------RIVDKFN------------ 239
Query: 247 LSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV 306
            ++++     N ++ ++   +PQ      L+ L+   + E +   LQ +L G A L   +
Sbjct: 240 -AEQILTMIKNERITHISL-VPQT-----LNWLMQQGLHEPYN--LQKILLGGAKLSATM 290
Query: 307 EEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMI-GTVGVPMTTVEARLESVPEMGYD 365
            E   +    P+   +G+TE+CS   T+  ++ +    TVG+P   V+ ++++  + G+ 
Sbjct: 291 IE-TALQYNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPNKEGH- 348
Query: 366 ALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGE 409
                  GE+ ++G  + +GY    DLT     +G+F+TGDI E
Sbjct: 349 -------GELMIKGANVMNGYLYPTDLT-GTFENGYFNTGDIAE 384

>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 76/184 (41%), Gaps = 24/184 (13%)
Query: 3   SRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFV 62
           S  +  GDR  +      E++ A  AC    +  VPL       A+   +   +   A +
Sbjct: 67  SLNLKKGDRVALIAETSSEFVEAFFACQYAGLVAVPL-------AIPXGVGQRDSWSAKL 119
Query: 63  QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP 122
           Q      + SC P   +     +   N ++    +  EL V   +W  F  L   D  L 
Sbjct: 120 QG----LLASCQPAAIITGDEWLPLVNAAT---HDNPELHVLSHAW--FKALPEADVALQ 170
Query: 123 PKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEV--LSVDQMFVVTGKVCSEEDTYFSFL 180
                +I+ + YTSG+T  P+GV++T++ + A +  +S D + +  G  C       S+L
Sbjct: 171 RPVPNDIAYLQYTSGSTRFPRGVIITHREVXANLRAISHDGIKLRPGDRC------VSWL 224
Query: 181 PLAH 184
           P  H
Sbjct: 225 PFYH 228

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	415
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	3e-67
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	4e-65
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	1e-64
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	1e-63
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	7e-61
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	1e-60
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	5e-60
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	1e-59
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	2e-59
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	6e-59
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	5e-56
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	5e-55
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	1e-48
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	4e-46
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	1e-45
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	2e-31
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	1e-30
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	7e-24
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	5e-23
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	1e-21
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	8e-14
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	2e-07
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	3e-10
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	8e-09
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	4e-08
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	1e-05
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	3e-06
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	1e-05
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	9e-06
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	1e-05
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	2e-05
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	4e-05
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	6e-05
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	7e-05
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	2e-04

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  221 bits (566), Expect = 3e-67
 Identities = 82/412 (19%), Positives = 132/412 (32%), Gaps = 77/412 (18%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           + + G+  GDR  +   N  E+              VP+   L A  V FI++ +   + 
Sbjct: 60  LTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVV 119

Query: 61  FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE 120
                  P I +   +      T+  +    S                 E L+    D  
Sbjct: 120 IYGAPSAPVIDAIRAQADP-PGTVTDWIGADS---------------LAERLRSAAADEP 163

Query: 121 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 180
                  +   IMYTSGTTG PKGVV T++++ +   S      V        D     L
Sbjct: 164 AVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVR-----YRDRLLLPL 218

Query: 181 PLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISN 239
           P+ H+           +G ++      D   +   I E +  +   VP + + +      
Sbjct: 219 PMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMR----- 273

Query: 240 KISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGA 299
                                             P    L     R          ++G 
Sbjct: 274 --------------------------------QVPEFAELDAPDFR--------YFITGG 293

Query: 300 APLPIHVEEFLRVTSGAPLTQGYGLTESCSG-CFTSLADVFNMIGTVGVPMTTVEARLES 358
           AP+P  + +         + QGY LTESC G       D     G+ G      +  +  
Sbjct: 294 APMPEALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAV-- 350

Query: 359 VPEMGYDALSSVPR--GEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIG 408
             + G           GE+ ++ + L   Y+ RP+ T +   +GWF TGDIG
Sbjct: 351 RGDDGVI----REHGEGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIG 398

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  215 bits (550), Expect = 4e-65
 Identities = 85/415 (20%), Positives = 153/415 (36%), Gaps = 84/415 (20%)

Query: 2   RSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAF 61
            +RG+  GDR         E ++   A       Y+PL      + +++ I  AE  I  
Sbjct: 46  VARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVV 105

Query: 62  VQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCEL 121
              +K   I +   +    ++T+      S                  +     +     
Sbjct: 106 CDPSKRDGIAAIAAKVGATVETLGPDGRGS----------------LTDAAAGASEAFAT 149

Query: 122 PPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLP 181
             +   +++ I+YTSGTTG  KG +L++  + +  L++   +  T      +D     LP
Sbjct: 150 IDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFT-----PDDVLIHALP 204

Query: 182 LAHIYDQIIETH-CIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISN 239
           + H +   + ++  +    S+ F    D   +++ +   + T+  GVP  Y R+      
Sbjct: 205 IYHTHGLFVASNVTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLL----- 257

Query: 240 KISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGA 299
                                            +P L       +R          +SG+
Sbjct: 258 --------------------------------QSPRLTKETTGHMR--------LFISGS 277

Query: 300 APLPIHV-EEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLES 358
           APL      E+   T G  + + YG+TE+             + G VG  +  V AR+  
Sbjct: 278 APLLADTHREWSAKT-GHAVLERYGMTETNMNTSNPYDGD-RVPGAVGPALPGVSARV-- 333

Query: 359 V-PEMGYDALSSVPR---GEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHTGDIG 408
             PE G +    +PR   G I ++G  +F GY++ P+ T+     DG+F TGD+G
Sbjct: 334 TDPETGKE----LPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLG 384

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  214 bits (547), Expect = 1e-64
 Identities = 75/414 (18%), Positives = 127/414 (30%), Gaps = 84/414 (20%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           +   GV+ GDR  I   NC E I  + A        +P+   L A+ + F++     S+ 
Sbjct: 48  LLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVV 107

Query: 61  FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQL-GTLDC 119
               +    +   LP     +K   +  + S                +  F  L      
Sbjct: 108 VAGTDYRDIVAGVLPSLGG-VKKAYAIGDGSGP--------------FAPFKDLASDTPF 152

Query: 120 ELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSF 179
             P     +   I++T+   G P+G +++   ++    S+   + +T     E D     
Sbjct: 153 SAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLT-----EADVNLGM 207

Query: 180 LPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGIS 238
           LPL H+    +       G +       D      DI+  K T+ +    +   I     
Sbjct: 208 LPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNI----- 262

Query: 239 NKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSG 298
                                                      + +R        A+   
Sbjct: 263 ----------------------------------LDQAAPAQLASLR--------AVTGL 280

Query: 299 AAPLPIHVEEFLRVTSGAPLTQGYGLTESCSG-CFTSLADVFNMIGTVGVPMTTVEARLE 357
             P    +E F      A     +G +E+     F    D      + G P+      + 
Sbjct: 281 DTPET--IERFEATCPNATFWATFGQSETSGLSTFAPYRDR---PKSAGRPLFWRTVAV- 334

Query: 358 SVPEMGYDALSSVPR---GEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIG 408
            V          +P    GEI LRG T+F GY+     T+    +GW HTGD+G
Sbjct: 335 -VDAEDRP----LPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMG 383

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  211 bits (539), Expect = 1e-63
 Identities = 70/407 (17%), Positives = 133/407 (32%), Gaps = 70/407 (17%)

Query: 5   GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE 64
                 R G+Y  N  + II + AC    I    +   L  N +   +   +V + F   
Sbjct: 44  KAYQQSRVGLYIDNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTL 103

Query: 65  NKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPK 124
                    +    +           ++        +     +     +    +      
Sbjct: 104 PLELRGFQIVSLDDI---EFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSF 160

Query: 125 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH 184
              +I++IM+TSGTTG  K V  T +   A  +   +           +  + S LP+ H
Sbjct: 161 NLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFD-----RDTNWLSVLPIYH 215

Query: 185 IYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISS 243
           I    +    + +G ++      +   ++  I+  + T  S VP+  + +          
Sbjct: 216 ISGLSVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLM--------- 266

Query: 244 GGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLP 303
                                          L +              LQ +L G A L 
Sbjct: 267 ----------------------------QQGLHEPY-----------NLQKILLGGAKLS 287

Query: 304 IHV-EEFLRVTSGAPLTQGYGLTESCSG-CFTSLADVFNMIGTVGVPMTTVEARLESVPE 361
             + E  L+     P+   +G+TE+CS     +   +     TVG+P   V+ ++++ P 
Sbjct: 288 ATMIETALQY--NLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKN-PN 344

Query: 362 MGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIG 408
                      GE+ ++G  + +GY    D       +G+F+TGDI 
Sbjct: 345 KE-------GHGELMIKGANVMNGYLYPTD-LTGTFENGYFNTGDIA 383

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  205 bits (523), Expect = 7e-61
 Identities = 86/427 (20%), Positives = 155/427 (36%), Gaps = 92/427 (21%)

Query: 2   RSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAF 61
             +GV  G+  G+   N  ++++ + A    A T VP+     +  +E I+N +E +   
Sbjct: 70  SRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLV 129

Query: 62  VQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCEL 121
           V      +    L +  +  + +                +G    S  E +  G+ D E 
Sbjct: 130 VHSMLYENFKPVLEKTGV--ERVFV--------------VGGEVNSLSEVMDSGSEDFEN 173

Query: 122 PP-KKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 180
                + +++ I YT GTTG PKGV+LT+  + A  L +     ++       DT    +
Sbjct: 174 VKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSH-----MDTIVGCM 228

Query: 181 PLAHIYDQIIETHCIHKGCSI----GFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTG 236
           P+ H  +  +    +  G        F   +   L E+I++ K T    VP   +     
Sbjct: 229 PMFHSAEFGLVNLMVTVGNEYVVMGMF---NQEMLAENIEKYKGTFSWAVPPALN----- 280

Query: 237 ISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAML 296
                     L                      N       +  +S ++           
Sbjct: 281 ---------VLV---------------------NTLESSNKTYDWSYLK--------VFA 302

Query: 297 SGAAPLPIHVEE-FLRVT------SGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPM 349
           +GA P+   + E  L++             Q +G+TE+C    T+     +   T GVPM
Sbjct: 303 TGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPM 362

Query: 350 TTVEARLESVPEMGYDALSSVPR---GEICLRGNTLFSGYYKRPDLTEEVIV-----DGW 401
           + +E ++     +  +    +     GEI +RG  +F GY+KR    +E          +
Sbjct: 363 SDIELKV-----ISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKF 417

Query: 402 FHTGDIG 408
           F TGD+G
Sbjct: 418 FRTGDVG 424

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  204 bits (521), Expect = 1e-60
 Identities = 85/422 (20%), Positives = 144/422 (34%), Gaps = 82/422 (19%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           +   G+  GD   ++  + PE+++A    + +               +      +   + 
Sbjct: 66  LNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLL 125

Query: 61  FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE 120
             Q      +        + +  + S  +               C  + E  Q    +  
Sbjct: 126 ITQACYYEKVKDFARESDVKVMCVDSAPD--------------GCLHFSELTQADENEAP 171

Query: 121 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 180
                  ++  + Y+SGTTG PKGV+LT++ ++  V                ED     L
Sbjct: 172 QVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYF-HSEDVILCVL 230

Query: 181 PLAHIYDQIIETHC-IHKGCSI----GFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYT 235
           P+ HIY       C +  G  I     F   ++  L+  I++ K ++   VP V      
Sbjct: 231 PMFHIYALNSIMLCGLRVGAPILIMPKF---EIGSLLGLIEKYKVSIAPVVPPVMM---- 283

Query: 236 GISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAM 295
                     +++K                       +P LD    S +R         +
Sbjct: 284 ----------SIAK-----------------------SPDLDKHDLSSLR--------MI 302

Query: 296 LSGAAPLPIHV-EEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM----IGTVGVPMT 350
            SG APL   + +        A L QGYG+TE+       LA          G  G  + 
Sbjct: 303 KSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVR 362

Query: 351 TVEARL---ESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGD 406
             E ++   E+   +  +       GEIC+RG+ +  GY   P+ T   I  +GW HTGD
Sbjct: 363 NAEMKIVDPETGASLPRNQ-----PGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGD 417

Query: 407 IG 408
           IG
Sbjct: 418 IG 419

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  202 bits (515), Expect = 5e-60
 Identities = 84/410 (20%), Positives = 141/410 (34%), Gaps = 87/410 (21%)

Query: 4   RGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQ 63
             +    R  ++ +   E  +A+ A     +  VPL    G   +  I++ +  S+    
Sbjct: 63  GRIGGAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAP 122

Query: 64  ENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPP 123
                                                  +      +             
Sbjct: 123 P-------------------------------DAELPPALGALERVDVDVRARGAVPEDG 151

Query: 124 KKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA 183
               + + ++YTSGTTG PKG V+  +A+   + ++   +  T      ED     LPL 
Sbjct: 152 ADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWT-----GEDVLVQGLPLF 206

Query: 184 HIYDQIIETHC-IHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKI 241
           H++  ++     + +G S+             ++ +   TM  GVP +Y R         
Sbjct: 207 HVHGLVLGILGPLRRGGSVRHLGRFSTEGAARELND-GATMLFGVPTMYHR--------- 256

Query: 242 SSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAP 301
                                            + ++L             + ++SG+A 
Sbjct: 257 ---------------------------------IAETLPADPELAKALAGARLLVSGSAA 283

Query: 302 LPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPE 361
           LP+H  E +   +G  + + YG+TE+     +  AD     GTVGVP+  VE RL  V E
Sbjct: 284 LPVHDHERIAAATGRRVIERYGMTETLMNT-SVRADGEPRAGTVGVPLPGVELRL--VEE 340

Query: 362 MGYDALSSVP--RGEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHTGDIG 408
            G    +      GEI +RG  LF+ Y  RPD T      DG+F TGD+ 
Sbjct: 341 DGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMA 390

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  202 bits (515), Expect = 1e-59
 Identities = 86/424 (20%), Positives = 153/424 (36%), Gaps = 82/424 (19%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           +++ G+    R  +   NC E+ I + A     +   P  +      +   +  ++ +I 
Sbjct: 69  LQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIV 128

Query: 61  FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDC- 119
           F  +  +  +++           ++  + V                  + F++  T    
Sbjct: 129 FSSKKGLDKVITVQKTVTTIKTIVILDSKVDYR----------GYQCLDTFIKRNTPPGF 178

Query: 120 ------ELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEE 173
                  +   +K  ++ IM +SG+TG PKGV LT++ IV             G   S  
Sbjct: 179 QASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPI--YGNQVSPG 236

Query: 174 DTYFSFLPLAHIYDQIIETHCIHKGCSI----GFWRGDVRYLMEDIQELKPTMFSGVPRV 229
               + +P  H +        +  G  +     F   D    ++ +Q+ K T    VP +
Sbjct: 237 TAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKF---DEETFLKTLQDYKCTSVILVPTL 293

Query: 230 YDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFG 289
           +                L+K                       + LL+    S +     
Sbjct: 294 FA--------------ILNK-----------------------SELLNKYDLSNLV---- 312

Query: 290 GRLQAMLSGAAPLPIHV-EEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVP 348
                + SG APL   V E   R  +   + QGYGLTE+ S    +        G  G  
Sbjct: 313 ----EIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDK-PGASGKV 367

Query: 349 MTTVEAR---LESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHT 404
           +   +A+   L++   +G +      RGE+C++G  L  GY   P+ T+E+I  +GW HT
Sbjct: 368 VPLFKAKVIDLDTKKSLGPNR-----RGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHT 422

Query: 405 GDIG 408
           GDIG
Sbjct: 423 GDIG 426

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  201 bits (514), Expect = 2e-59
 Identities = 85/424 (20%), Positives = 150/424 (35%), Gaps = 82/424 (19%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           M+  G+N   R  +   N  ++ + +       +   P  D      +   +N ++ ++ 
Sbjct: 67  MKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVV 126

Query: 61  FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQ----LGT 116
           FV +  +  IL+   +  +  K I+           +++       S   F+      G 
Sbjct: 127 FVSKKGLQKILNVQKKLPIIQKIIIM----------DSKTDYQGFQSMYTFVTSHLPPGF 176

Query: 117 LDCELPPKK---KTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEE 173
            + +  P+       I+ IM +SG+TG PKGV L ++              + G     +
Sbjct: 177 NEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARD--PIFGNQIIPD 234

Query: 174 DTYFSFLPLAHIYDQIIETHCIHKGCSI----GFWRGDVRYLMEDIQELKPTMFSGVPRV 229
               S +P  H +        +  G  +     F   +    +  +Q+ K      VP +
Sbjct: 235 TAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRF---EEELFLRSLQDYKIQSALLVPTL 291

Query: 230 YDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFG 289
           +                 +K                       + L+D    S +     
Sbjct: 292 FS--------------FFAK-----------------------STLIDKYDLSNLH---- 310

Query: 290 GRLQAMLSGAAPLPIHV-EEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVP 348
                + SG APL   V E   +      + QGYGLTE+ S    +        G VG  
Sbjct: 311 ----EIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDK-PGAVGKV 365

Query: 349 MTTVEAR---LESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHT 404
           +   EA+   L++   +G +      RGE+C+RG  + SGY   P+ T  +I  DGW H+
Sbjct: 366 VPFFEAKVVDLDTGKTLGVNQ-----RGELCVRGPMIMSGYVNNPEATNALIDKDGWLHS 420

Query: 405 GDIG 408
           GDI 
Sbjct: 421 GDIA 424

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  199 bits (508), Expect = 6e-59
 Identities = 67/414 (16%), Positives = 123/414 (29%), Gaps = 78/414 (18%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           + + G+ P  R  +   N  + +IA+ A +        L   L +  +  +I   E++ A
Sbjct: 46  LHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAA 105

Query: 61  FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE 120
            +       +   + +     + I                  +     +          E
Sbjct: 106 VIAVG--RQVADAIFQSGSGARIIF-----------------LGDLVRDGEPYSYGPPIE 146

Query: 121 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 180
            P ++    + I YTSGTTG PK  ++  +A  + VL +       G      +     +
Sbjct: 147 DPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV---GLRHGRHNVVLGLM 203

Query: 181 PLAHIYDQIIETH-CIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGIS 238
           PL H+          +    +            ++ +Q+ + T     P   D       
Sbjct: 204 PLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDA------ 257

Query: 239 NKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSG 298
                                               L  +   +         L+ +   
Sbjct: 258 ------------------------------------LAAAAAHAGSSLKLD-SLRHVTFA 280

Query: 299 AAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLES 358
            A +P  V E +           YG TE+ +  +          GT   P    E R+  
Sbjct: 281 GATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKT----GTEMAPGFFSEVRI-- 334

Query: 359 VPEMGYDALSSVPR---GEICLRG-NTLFSGYYKRPDLTEEVIVDGWFHTGDIG 408
           V   G      V     GE+ +   ++ F GY  +P  T E + DGW+ T D+ 
Sbjct: 335 VRIGG-GVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVA 387

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  192 bits (489), Expect = 5e-56
 Identities = 77/418 (18%), Positives = 128/418 (30%), Gaps = 80/418 (19%)

Query: 2   RSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAF 61
           R+ GV+P +R  +   +     +A        +  V     L      +++ H+      
Sbjct: 66  RTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVI 125

Query: 62  VQENKIPSILSCLPRC-CLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE 120
                + ++   L        + IVS         +  E        +EE +       +
Sbjct: 126 ASGALVQNVTQALESAEHDGCQLIVS---------QPRESEPRLAPLFEELIDAAAPAAK 176

Query: 121 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVC---SEEDTYF 177
                  +I+  +Y+SG+TG+PKG V T+  +            +  K     +E D  F
Sbjct: 177 AAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYW-------TAELYAKPILGIAENDVVF 229

Query: 178 SFLPLAHIYDQIIETH-CIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIY 234
           S   L   Y         +  G +            +   + E +PT+F GVP       
Sbjct: 230 SAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVP------- 282

Query: 235 TGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQA 294
           T                    Y   L            +P L +     IR         
Sbjct: 283 T-------------------LYANML-----------VSPNLPARADVAIRIC------- 305

Query: 295 MLSGAAPLPIHV-EEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVE 353
             S    LP  + E F     G  +  G G TE     F S        GT G P+   E
Sbjct: 306 -TSAGEALPREIGERFTAHF-GCEILDGIGSTE-MLHIFLSNRAGAVEYGTTGRPVPGYE 362

Query: 354 ARLESVPEMGYDALSSVPR---GEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIG 408
             L    E G+     VP    G++ ++G +    Y+   + +    +  W  +GD  
Sbjct: 363 IEL--RDEAGHA----VPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKY 414

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  195 bits (497), Expect = 5e-55
 Identities = 98/425 (23%), Positives = 151/425 (35%), Gaps = 80/425 (18%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
               GVN  D   +   NCPE++++  A + +  T            +      +   + 
Sbjct: 105 FHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLI 164

Query: 61  FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE 120
             +   +  I        + +  I    +V   +          C  + E  Q  T   E
Sbjct: 165 ITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPE---------GCLRFTELTQSTTEASE 215

Query: 121 LPPKKKTN---ISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYF 177
           +    + +   +  + Y+SGTTG PKGV+LT++ +V  V                +D   
Sbjct: 216 VIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYF-HSDDVIL 274

Query: 178 SFLPLAHIYDQIIETHC-IHKGCSI----GFWRGDVRYLMEDIQELKPTMFSGVPRVYDR 232
             LP+ HIY       C +  G +I     F   ++  L+E IQ  K T+   VP +   
Sbjct: 275 CVLPMFHIYALNSIMLCGLRVGAAILIMPKF---EINLLLELIQRCKVTVAPMVPPIVL- 330

Query: 233 IYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRL 292
                        A++K                       +   +    S IR       
Sbjct: 331 -------------AIAK-----------------------SSETEKYDLSSIR------- 347

Query: 293 QAMLSGAAPLPIHV-EEFLRVTSGAPLTQGYGLTESCSGCFTSLA----DVFNMIGTVGV 347
             + SGAAPL   + +        A L QGYG+TE+      SL           G  G 
Sbjct: 348 -VVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGT 406

Query: 348 PMTTVEARLESVPEMGYDALSSVP---RGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFH 403
            +   E ++   P+ G     S+     GEIC+RG+ +  GY   P  T E I  DGW H
Sbjct: 407 VVRNAEMKIVD-PDTG----DSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLH 461

Query: 404 TGDIG 408
           TGDIG
Sbjct: 462 TGDIG 466

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  173 bits (442), Expect = 1e-48
 Identities = 63/421 (14%), Positives = 117/421 (27%), Gaps = 81/421 (19%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           +R +G+ PG+   +   N  E  I   A     +  V    +   + +    +  E ++ 
Sbjct: 67  LRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALL 126

Query: 61  FVQENKIPS----ILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT 116
                         L+        ++ +                      + ++ +    
Sbjct: 127 IADRQHALFSGDDFLNTFVTEHSSIRVVQLLN-------------DSGEHNLQDAINHPA 173

Query: 117 LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTY 176
            D    P     ++    + GTTG PK +  T+      V    ++   T     ++  Y
Sbjct: 174 EDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFT-----QQTRY 228

Query: 177 FSFLPLAHIYDQIIETH--CIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRI 233
              +P AH Y             G ++              I++ +  + + VP      
Sbjct: 229 LCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLW 288

Query: 234 YTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQ 293
                                                           +         L+
Sbjct: 289 L-----------------------------------QALIEGESRAQLA--------SLK 305

Query: 294 AMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMI-GTVGVPMT-T 351
            +  G A L   +   +    G  L Q +G+ E     +T L D    I  T G PM   
Sbjct: 306 LLQVGGARLSATLAARIPAEIGCQLQQVFGMAE-GLVNYTRLDDSAEKIIHTQGYPMCPD 364

Query: 352 VEARLESVPEMGYDALSSVPR---GEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDI 407
            E  +      G      +P+   G +  RG   F GYYK P         +G++ +GD+
Sbjct: 365 DEVWV--ADAEGNP----LPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDL 418

Query: 408 G 408
            
Sbjct: 419 I 419

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  165 bits (421), Expect = 4e-46
 Identities = 75/428 (17%), Positives = 132/428 (30%), Gaps = 99/428 (23%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
            +  G+   DR  +   N  E+   + A        V    +  ++ + +    AE +  
Sbjct: 67  FQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAY 126

Query: 61  FVQENK--------IPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFL 112
            + +             + S LP     LK I+           EAEE       +    
Sbjct: 127 IIPDAYSGFDYRSLARQVQSKLP----TLKNIIVAG--------EAEE-------FLPLE 167

Query: 113 QLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSE 172
            L T   +LP  K ++++ +  + G+TG  K +  T+   +  +    ++  +       
Sbjct: 168 DLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLD-----H 222

Query: 173 EDTYFSFLPLAHIYDQIIETH--CIHKGCSI----GFWRGDVRYLMEDIQELKPTMFSGV 226
              Y + LP+AH Y          ++ G  +                 I+  K T+ + V
Sbjct: 223 STVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSP---SPDDAFPLIEREKVTITALV 279

Query: 227 PRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIRE 286
           P +                                           A        S ++ 
Sbjct: 280 PPLAMVWM-------------------------------------DAASSRRDDLSSLQ- 301

Query: 287 AFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMI-GTV 345
                   +  G A         ++   G  L Q +G+ E     +T L D   +I  T 
Sbjct: 302 -------VLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAE-GLVNYTRLDDPEEIIVNTQ 353

Query: 346 GVPMT-TVEARLESVPEMGYDALSSVPR---GEICLRGNTLFSGYYKRPDLTEEVIV-DG 400
           G PM+   E+R+    +   D    V     G +  RG     GYYK  +        DG
Sbjct: 354 GKPMSPYDESRV--WDDHDRD----VKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDG 407

Query: 401 WFHTGDIG 408
           ++ TGDI 
Sbjct: 408 FYRTGDIV 415

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  164 bits (417), Expect = 1e-45
 Identities = 62/424 (14%), Positives = 115/424 (27%), Gaps = 87/424 (20%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           +  +G+  GD   +   N  E+ I   A     +  +    +     +   I   +  + 
Sbjct: 72  LAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLL 131

Query: 61  FVQEN----KIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT 116
                         +  L    L  + I+             +        W E      
Sbjct: 132 IGSRQHEVFSNNQFIDSLHDVNLSPEIILML---------NHQATDFGLLDWIE--TPAE 180

Query: 117 LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTY 176
              +        ++    + G+TG PK +  T+      V +  ++  +           
Sbjct: 181 TFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLN-----SNTRL 235

Query: 177 FSFLPLAHIYDQIIETH--CIHKGCSI----GFWRGDVRYLMEDIQELKPTMFSGVPRVY 230
              LP  H +          +H G  +         +       IQ  +  M S VP   
Sbjct: 236 LCALPAPHNFMLSSPGALGVLHAGGCVVMAPNP---EPLNCFSIIQRHQVNMASLVPSAV 292

Query: 231 DRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGG 290
                                                                ++     
Sbjct: 293 IMWL-------------------------------------EKAAQYKDQIQSLK----- 310

Query: 291 RLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMI-GTVGVPM 349
               +  G A  P  +   +       L Q +G+ E     +T L D    I  T G P+
Sbjct: 311 ---LLQVGGASFPESLARQVPEVLNCKLQQVFGMAE-GLVNYTRLDDSDEQIFTTQGRPI 366

Query: 350 T-TVEARLESVPEMGYDALSSVPR---GEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHT 404
           +   E ++  V E   +    VP    G +  RG   F GYY+ P+   +V   D ++++
Sbjct: 367 SSDDEIKI--VDEQYRE----VPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYS 420

Query: 405 GDIG 408
           GD+ 
Sbjct: 421 GDLV 424

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score =  124 bits (315), Expect = 2e-31
 Identities = 97/456 (21%), Positives = 149/456 (32%), Gaps = 141/456 (30%)

Query: 2   RSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITY--VPLYDTLGA-----------NAV 48
           R+ GV  GDR    G N       +EA       Y  VP    +GA             +
Sbjct: 65  RALGVGVGDRVATLGFNHFR---HLEA-------YFAVPG---MGAVLHTANPRLSPKEI 111

Query: 49  EFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 108
            +I+NHAE  +     N +P + +        ++  V             E+      ++
Sbjct: 112 AYILNHAEDKVLLFDPNLLPLVEAIRGEL-KTVQHFVVMD----------EKAPEGYLAY 160

Query: 109 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGK 168
           EE L        +P   +     + YT+GTTG PKGVV +++A+V   L+   +      
Sbjct: 161 EEALGEEADPVRVP---ERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTA-- 215

Query: 169 VCSEEDTYFSFLPLAHIYDQIIETHCIHKGCS------IGFWRG----------DVRYLM 212
             SE+D     +P+ H               +           G          D   L+
Sbjct: 216 -LSEKDVVLPVVPMFH--------------VNAWCLPYAATLVGAKQVLPGPRLDPASLV 260

Query: 213 EDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKA 272
           E       T  +GVP V+                                          
Sbjct: 261 ELFDGEGVTFTAGVPTVW-------------------------------LA--------- 280

Query: 273 APLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESC---S 329
             L D L             + ++ G+A     +  F R+  G  + QGYGLTE+     
Sbjct: 281 --LADYL--ESTGHRLKTLRRLVVGGSAAPRSLIARFERM--GVEVRQGYGLTETSPVVV 334

Query: 330 GCF-------TSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPR-----GEICL 377
             F        S  +   +    G+P+  V  R+    E G      VP+     GE+ L
Sbjct: 335 QNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRV--ADEEGRP----VPKDGKALGEVQL 388

Query: 378 RGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQP 412
           +G  +  GYY   + T   +  DG+F TGDI  W  
Sbjct: 389 KGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDE 424

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score =  122 bits (308), Expect = 1e-30
 Identities = 60/422 (14%), Positives = 131/422 (31%), Gaps = 85/422 (20%)

Query: 3   SRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFV 62
           + G+  GDR  +     PEW + +  C    + ++P    + +  + + +  ++      
Sbjct: 93  ACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVA 152

Query: 63  QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP 122
            +  I  + +    C   L+  +  +          E+      ++++ L   +      
Sbjct: 153 GDEVIQEVDTVASEC-PSLRIKLLVS----------EKSCDGWLNFKKLLNEASTTHHCV 201

Query: 123 PKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL 182
                  S I +TSGT+G PK    +  ++  +         +        D  ++    
Sbjct: 202 ETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQ-----ASDIMWTISDT 256

Query: 183 A---HIYDQIIETHCIHKGCSIGFWRG---DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 236
               +I   ++E      G           D   +++ +         G P VY      
Sbjct: 257 GWILNILCSLMEP--WALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVY------ 308

Query: 237 ISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAML 296
                        ++           +++ +   K         F  ++          +
Sbjct: 309 -------------RML----------LQQDLSSYK---------FPHLQNC--------V 328

Query: 297 SGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARL 356
           +    L     E  R  +G  + + YG TE           +    G +G   +  + ++
Sbjct: 329 TVGESLLPETLENWRAQTGLDIRESYGQTE-TGLTCMVSKTMKIKPGYMGTAASCYDVQI 387

Query: 357 ESVPEMGYDALSSVPR---GEICLRGNT-----LFSGYYKRPDLTEEVIVDGWFHTGDIG 408
             + + G    + +P    G+I +R        +FSGY   PD T   I   ++  GD G
Sbjct: 388 --IDDKG----NVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRG 441

Query: 409 EW 410
             
Sbjct: 442 IK 443

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score = 99.8 bits (249), Expect = 5e-23
 Identities = 68/461 (14%), Positives = 123/461 (26%), Gaps = 122/461 (26%)

Query: 2   RSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVE---FIINHAEVS 58
              G   GDR  I      E+++A           VPL    G    E    +++ +   
Sbjct: 76  SRCGS-TGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPV 134

Query: 59  IAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLD 118
                 + +  ++  + R                       E   S    +         
Sbjct: 135 AILTTSSAVDDVVQHVAR--------------------RPGESPPSIIEVDLLDLDAPNG 174

Query: 119 CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVT-GKVCSEEDTYF 177
                 +  + + + YTSG+T  P GVV+++Q +      +   +      +        
Sbjct: 175 YTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALV 234

Query: 178 SFLPLAHIYDQIIETH--CIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRV------ 229
           S+LP  H    ++      I  G            L        P  F   P        
Sbjct: 235 SWLPFYHDM-GLVIGICAPILGGYPA--------VLT------SPVSFLQRPARWMHLMA 279

Query: 230 -YDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAF 288
                ++   N              FA+       ++    + A    D      I    
Sbjct: 280 SDFHAFSAAPN--------------FAFELAA---RRTTDDDMAG--RD---LGNILTIL 317

Query: 289 GGRLQAMLSGAAPLPIH-VEEFLRVTSGAPLTQ-----GYGLTESCSGCFTSLADVFNMI 342
                   SG+  +    ++ F    +   L +      Y L E+      + +      
Sbjct: 318 --------SGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYV--ATSKPGQPP 367

Query: 343 GTVGVPMTTVEA-RLESVPEMGYDALSSVPR----------------------GEICLRG 379
            TV     ++ A   +     G  +L S                         GEI + G
Sbjct: 368 ETVDFDTESLSAGHAKPCAGGGATSLISYMLPRSPIVRIVDSDTCIECPDGTVGEIWVHG 427

Query: 380 NTLFSGYYKRPDLTEEVIV------------DGWFHTGDIG 408
           + + +GY+++PD +E                  W  TGD G
Sbjct: 428 DNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSG 468

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score = 95.8 bits (239), Expect = 1e-21
 Identities = 81/456 (17%), Positives = 144/456 (31%), Gaps = 118/456 (25%)

Query: 2   RSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAF 61
           ++ G  PGDR  +  +     I A   C       VP+Y       ++            
Sbjct: 58  QAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLD------------ 105

Query: 62  VQENKIPSILS-CLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE 120
               K   I++   P   L +   +     +       + L +   + E      +   +
Sbjct: 106 ----KAQRIVTNSKPVIVLMIADHIKKF-TADELNTNPKFLKIPAIALESIELNRSSSWQ 160

Query: 121 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 180
               K  +I+ + YTSG+T  PKGV++++  ++  +  +   F +      +E   FS+L
Sbjct: 161 PTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMN-----DETIIFSWL 215

Query: 181 PLAHIYDQIIETHC--IHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRV-------YD 231
           P  H    +I      I+ G            +M       P  F   P         Y 
Sbjct: 216 PPHHDM-GLIGCILTPIYGGIQA--------IMM------SPFSFLQNPLSWLKHITKYK 260

Query: 232 RIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGR 291
              +G  N              FAY+Y +   K+   + K    LD    S    AF   
Sbjct: 261 ATISGSPN--------------FAYDYCV---KRIREEKKEG--LD---LSSWVTAF--- 295

Query: 292 LQAMLSGAAPLPIH-VEEFLRVTSGAPLTQ-----GYGLTESCSGCFTSLADVFNMIGTV 345
                +GA P+    +E F +        +      YGL E+      +     +   T+
Sbjct: 296 -----NGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLV--TGGTPGSSYKTL 348

Query: 346 GVPMTTVEA-RLESVPEMGYDALSSV----PR-------------------GEICLRGNT 381
            +     +  R+    +    +   V    P                    GEI ++ N+
Sbjct: 349 TLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIIDPDTLIPCDFDQVGEIWVQSNS 408

Query: 382 LFSGYYKRPDLTEEVIV---------DGWFHTGDIG 408
           +  GY+ +P+ T                +  TGD+G
Sbjct: 409 VAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLG 444

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 72.2 bits (178), Expect = 8e-14
 Identities = 25/160 (15%), Positives = 48/160 (30%), Gaps = 16/160 (10%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVS-- 58
               G+  GD   +   +  ++   M   +      VP    L    + + I  A +   
Sbjct: 103 FVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMI 162

Query: 59  IAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLD 118
           +   +++    +      C      I            E          + + L+  +  
Sbjct: 163 VCIAEDDVPEQVDEAHAEC----GDIPLKKAKVGGDVLEGWI------DFRKELEESSPI 212

Query: 119 CELP-PKKKTN---ISTIMYTSGTTGEPKGVVLTNQAIVA 154
            E P  +  T    I  + ++SGT G PK V   N   + 
Sbjct: 213 FERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLG 252

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 51.8 bits (125), Expect = 2e-07
 Identities = 31/111 (27%), Positives = 45/111 (40%), Gaps = 16/111 (14%)

Query: 306 VEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYD 365
              FL  T G  L +G+G TE+      +   +    G++G P    +  L  +   G  
Sbjct: 358 FNRFLEFT-GIKLMEGFGQTETVVTI-ATFPWMEPKPGSIGKPTPGYKIEL--MDRDG-- 411

Query: 366 ALSSVPR---GEICLRGNT-----LFSGYYKRPDLTEEVIVDGWFHTGDIG 408
                     GEI +         LF  Y K P+ TEE   DG++HTGD+ 
Sbjct: 412 --RLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMA 460

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score = 61.0 bits (149), Expect = 3e-10
 Identities = 59/426 (13%), Positives = 114/426 (26%), Gaps = 133/426 (31%)

Query: 2   RSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAI-----TYVPLYDTLGANAVEFIINHAE 56
            S   +      +YG   PE II                Y+P+  ++ A+ V+ I  ++ 
Sbjct: 44  SSEYPDDRSPIMVYGHMQPEMIINF-----LGCVKAGHAYIPVDLSIPADRVQRIAENSG 98

Query: 57  VSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT 116
             +         + L         LK I      ++                        
Sbjct: 99  AKLLLSATAVTVTDLPVRIVSEDNLKDIFFTHKGNTP----------------------N 136

Query: 117 LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTY 176
            +  +          I+YTSG+TG PKGV +T   +V+      + F +          +
Sbjct: 137 PEHAVKG---DENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQ-----TGQVF 188

Query: 177 -----FSF--------LPL---AHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKP 220
                FSF          L     ++        +             + L   +++   
Sbjct: 189 LNQAPFSFDLSVMDIYPSLVTGGTLW---AIDKDMIA---------RPKDLFASLEQSDI 236

Query: 221 TMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLV 280
            +++  P                                                 +  +
Sbjct: 237 QVWTSTP----------------------------------------------SFAEMCL 250

Query: 281 -FSKIREAFGGRLQAMLSGAAPLPI-HVEEFLRVTSGAPLTQGYGLTES--CSGCFTSLA 336
             +   E+    ++  L     LP     + +     A +   YG TE+           
Sbjct: 251 MEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTE 310

Query: 337 DVFNMIGTV--GVPM--TTV---EARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKR 389
           +V +   ++  G       +   +      P  G         GEI + G ++  GY   
Sbjct: 311 EVLDQYKSLPVGYCKSDCRLLIMKEDGTIAP-DG------EK-GEIVIVGPSVSVGYLGS 362

Query: 390 PDLTEE 395
           P+LTE+
Sbjct: 363 PELTEK 368

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369

 Score = 55.9 bits (134), Expect = 8e-09
 Identities = 41/288 (14%), Positives = 80/288 (27%), Gaps = 40/288 (13%)

Query: 128 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 187
           +   +  + GTTG PK VV  +  I A +      +          +T  +     HI  
Sbjct: 92  SHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGR-PSGNTLAAIPTGPHIVG 150

Query: 188 QIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGAL 247
            I +   +  G        D R++   + E      + V +    +   + N + +    
Sbjct: 151 AINKERALRLGGMFFSIDIDPRWVKRSLSE---GDTATVRKYTHHLVDQVQNTLMNQDI- 206

Query: 248 SKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLV-FSKIREAFGGRLQAMLSGAAPLPIHV 306
            + L                P     P+L  L+   ++       L  +  G   L +  
Sbjct: 207 -RFLV-------------TTP-----PVLRELLKRPEVVLQMKQSLAQITLGGTELNLDE 247

Query: 307 EEFLR--VTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESV-PEMG 363
            +F+   +      +  YG T +     + L    +           +   +  V     
Sbjct: 248 IKFIASEILPDCEFSASYGSTSALGVSRSLLITSESQQVIYDSFSPFITYDV--VDSITA 305

Query: 364 YDALSSVP---RGEIC---LRGNTLFSGYYKRPDLTEEVIVDGWFHTG 405
                 V    RG +    L     +    +R        V G+    
Sbjct: 306 QT----VEYGERGNVIVTHLSPWAFYPRVAERDTAIRLPGVSGFAGDR 349

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 54.4 bits (132), Expect = 4e-08
 Identities = 31/143 (21%), Positives = 45/143 (31%), Gaps = 23/143 (16%)

Query: 286 EAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTES--CSGCFT-SLADVFNMI 342
           +  GG  Q +  G      HV   L       L  GYG TE+   + C   +  D+    
Sbjct: 273 DCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDD 332

Query: 343 GTVGVPM--TTV---EARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI 397
             +G  +  T V   +   + + E           GEI   G  L  GY      T    
Sbjct: 333 IPIGKAIAGTAVLLLDEHGQEIAEPD------RA-GEIVAFGAGLAQGYRNDAARTRASF 385

Query: 398 VDGWFH--------TGDIGEWQP 412
           V+  +         TGD   +  
Sbjct: 386 VELPYRGRLLRAYRTGDRARYDE 408

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 46.3 bits (111), Expect = 1e-05
 Identities = 25/157 (15%), Positives = 38/157 (24%), Gaps = 41/157 (26%)

Query: 2   RSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAI-----TYVPLYDTLGANAVEFIINHAE 56
                 PG   G+YG    E I  +      AI      Y+ +     A     +    +
Sbjct: 70  LEHYPQPGVCLGVYGEYSRESITCL-----LAILLSGHHYLYIDLKQPAAWNAELCRQVD 124

Query: 57  VSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT 116
             +                                S+    A  L               
Sbjct: 125 CRLILDC----------------------------STTPTPANGLPCVPVRHLPAAPASV 156

Query: 117 LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV 153
                       I+ I ++SGTTG PK +  T+  I 
Sbjct: 157 ARPCFAA---DQIAYINFSSGTTGRPKAIACTHAGIT 190

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score = 48.6 bits (117), Expect = 3e-06
 Identities = 31/190 (16%), Positives = 62/190 (32%), Gaps = 49/190 (25%)

Query: 2   RSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAI-----TYVPLYDTLGANAVEFIINHAE 56
             +G+      GI      +  I +      A+      YVP+        +++I++ ++
Sbjct: 82  IEKGIGKDTLVGIMMEKSIDLFIGI-----LAVLKAGGAYVPIDIEYPKERIQYILDDSQ 136

Query: 57  VSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT 116
             +   Q+     ++  +       +                       F  +       
Sbjct: 137 ARMLLTQK----HLVHLIHNIQFNGQVE--------------------IFEEDTIKIREG 172

Query: 117 --LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEED 174
             L         T+++ ++YTSGTTG PKG +L ++ I    +  +    VT     E+D
Sbjct: 173 TNLHVPSKS---TDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVT-----EKD 224

Query: 175 TY-----FSF 179
                   SF
Sbjct: 225 RIGQFASISF 234

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score = 45.9 bits (110), Expect = 1e-05
 Identities = 32/132 (24%), Positives = 52/132 (39%), Gaps = 25/132 (18%)

Query: 295 MLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTES--CSGCFTSLADVFNMIGTVGVPMTTV 352
           + +G+A  P  V ++            YG TE+  C+  + +  +       +G P+   
Sbjct: 299 ITAGSATSPSLVNKWKE---KVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNT 355

Query: 353 E-----ARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFH---- 403
           +       L+    +G         GE+C+ G  L  GY+KRP+LT +  VD  F     
Sbjct: 356 QIYIVDENLQLKS-VG------EA-GELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEK 407

Query: 404 ---TGDIGEWQP 412
              TGD   W  
Sbjct: 408 LYKTGDQARWLS 419

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score = 47.2 bits (113), Expect = 9e-06
 Identities = 24/162 (14%), Positives = 48/162 (29%), Gaps = 45/162 (27%)

Query: 2   RSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAI-----TYVPL---Y--DTLGANAVEFI 51
           +  G   G    +Y     E +I +       +      Y+P+      D +      ++
Sbjct: 507 QKHGAGKGSVVALYTKRSLELVIGI-----LGVLKAGAAYLPVDPKLPEDRI-----SYM 556

Query: 52  INHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEF 111
           +  +  +     +     +            T+         ++                
Sbjct: 557 LADSAAACLLTHQ----EMKEQAAELPYTGTTLFIDDQTRFEEQASD------------- 599

Query: 112 LQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV 153
                    + P    + + IMYTSGTTG+PKG + T+  I 
Sbjct: 600 -----PATAIDPN---DPAYIMYTSGTTGKPKGNITTHANIQ 633

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 36/138 (26%), Positives = 58/138 (42%), Gaps = 26/138 (18%)

Query: 292 LQAMLSGAAPLPI-HVEEFLRVTSGAPLTQGYGLTES--CSGCFTSLADVFNMIGTV--G 346
           L+ +L G     + HV + LR+     L   YG TE    +     + D+ + I ++  G
Sbjct: 722 LRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHV-VHDLPDSISSLPIG 780

Query: 347 VPM--TTV---EARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGW 401
            P+   +V     + +  P  G         GE+C+ G  +  GY  R DLT+E  ++  
Sbjct: 781 KPISNASVYILNEQSQLQP-FG------AV-GELCISGMGVSKGYVNRADLTKEKFIENP 832

Query: 402 FH-------TGDIGEWQP 412
           F        TGD+  W P
Sbjct: 833 FKPGETLYRTGDLARWLP 850

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 27/167 (16%), Positives = 53/167 (31%), Gaps = 33/167 (19%)

Query: 2   RSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAI-----TYVPLYDTLGANAVEFIINHAE 56
               +  G    +           +       I     TYVP+   L  +   F++  + 
Sbjct: 73  IHASL-HGRAIAVSLDRSLIAFAII-----VGIMKSGNTYVPIEAGLPNDRKSFLLRDSR 126

Query: 57  VSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT 116
            ++AFV +N    +        L  K      N+S+                        
Sbjct: 127 AAMAFVCDNNFDGVELPPETKVLDTKNQSFIENLSTQD-------------------TSD 167

Query: 117 LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF 163
           +    P       + ++YTSG+TG PKGV ++   + +   +  ++ 
Sbjct: 168 ILNNYPE---NLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLI 211

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score = 44.4 bits (106), Expect = 4e-05
 Identities = 26/157 (16%), Positives = 51/157 (32%), Gaps = 37/157 (23%)

Query: 2   RSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAIT-----YVPLYDTLGANAVEFIINHAE 56
            S  +       ++G+   + +         A+T     Y+P+        +  II  A+
Sbjct: 47  DSLALLAKSPVLVFGAQTYDMLATF-----VALTKSGHAYIPVDVHSAPERILAIIEIAK 101

Query: 57  VSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT 116
            S+    E + P  +  +    L                                L    
Sbjct: 102 PSLIIAIE-EFPLTIEGISLVSL-------------------------SEIESAKLAEMP 135

Query: 117 LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV 153
            +      K  +   I++TSGTTG+PKGV +++  ++
Sbjct: 136 YER-THSVKGDDNYYIIFTSGTTGQPKGVQISHDNLL 171

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score = 44.1 bits (105), Expect = 6e-05
 Identities = 24/131 (18%), Positives = 36/131 (27%), Gaps = 21/131 (16%)

Query: 295 MLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTES--CSGCFTSLADVFNMIGTV--GVPMT 350
              G         +       A +   YG TE+           ++ +    +  G P  
Sbjct: 270 YFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKP 329

Query: 351 TVE-----ARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWF--- 402
                      + +   G         GEI + G  +  GY   P+ T E          
Sbjct: 330 DSPTYIIDEDGKELS-SG------EQ-GEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPA 381

Query: 403 -HTGDIGEWQP 412
            HTGDIG    
Sbjct: 382 YHTGDIGSLTE 392

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score = 44.0 bits (105), Expect = 7e-05
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 10/53 (18%)

Query: 132 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTY-----FSF 179
           I+YTSG+TG PKGV ++   + +    +   F V+         +     FSF
Sbjct: 148 IIYTSGSTGNPKGVQISAANLQSFTDWICADFPVS-----GGKIFLNQAPFSF 195

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 23/110 (20%), Positives = 37/110 (33%), Gaps = 17/110 (15%)

Query: 295 MLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTES--CSGCFTSLADVFNMIGTV--GVPMT 350
           M  G        +  L     A +   YG TE+           DV +   ++  G    
Sbjct: 266 MFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKP 325

Query: 351 TVE-----ARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEE 395
            +         + +P  G         GEI + G ++  GY   P+LTE+
Sbjct: 326 DMNIFIMDEEGQPLP-EG------EK-GEIVIAGPSVSRGYLGEPELTEK 367

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	415
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	100.0
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	100.0
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	100.0
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	100.0
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	100.0
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	100.0
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	100.0
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	100.0
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	100.0
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	100.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	100.0
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	100.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	100.0
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	100.0
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	100.0
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	100.0
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	100.0
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.97
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	97.26
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	97.19
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	96.15

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=2.7e-57  Score=442.64  Aligned_cols=349  Identities=23%  Similarity=0.326  Sum_probs=285.6

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |+++|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.+..+.+...... .+.
T Consensus        64 L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~  142 (541)
T 1v25_A           64 LRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGE-LKT  142 (541)
T ss_dssp             HHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGG-CSS
T ss_pred             HHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhh-CCC
Confidence            4578999999999999999999999999999999999999999999999999999999999998876655544332 244


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhh-
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSV-  159 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~-  159 (415)
                      .+.++.++....          .....++++......   .....++++++|+|||||||.||+|++||+++....... 
T Consensus       143 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~---~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~  209 (541)
T 1v25_A          143 VQHFVVMDEKAP----------EGYLAYEEALGEEAD---PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAAS  209 (541)
T ss_dssp             CCEEEESSSCCC----------TTCEEHHHHCCSCCC---CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTT
T ss_pred             ccEEEEecCCCC----------cccccHHHHhhccCC---cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhh
Confidence            556666554321          012345555433211   134567899999999999999999999999998776542 


Q ss_pred             -hhhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC--CHHHHHHHHHhhCCeEEEeCcHHHHHHHHH
Q 014951          160 -DQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTG  236 (415)
Q Consensus       160 -~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~  236 (415)
                       ...+     .+.++|++++++|++|.+++...+.+++.|+++++.+.  ++..+++.|+++++|+++++|+++..+++.
T Consensus       210 ~~~~~-----~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~  284 (541)
T 1v25_A          210 LVDGT-----ALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADY  284 (541)
T ss_dssp             STTTT-----CCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHH
T ss_pred             hcccc-----cCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhh
Confidence             2222     67889999999999999998777888999999999864  999999999999999999999999998764


Q ss_pred             HHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCC
Q 014951          237 ISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGA  316 (415)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~  316 (415)
                      ......                                             ..+++|.+++||+++++++.+++ +.+++
T Consensus       285 ~~~~~~---------------------------------------------~l~~lr~i~~gG~~l~~~~~~~~-~~~g~  318 (541)
T 1v25_A          285 LESTGH---------------------------------------------RLKTLRRLVVGGSAAPRSLIARF-ERMGV  318 (541)
T ss_dssp             HHHHTC---------------------------------------------CCSSCCEEEECSSCCCHHHHHHH-HHTTC
T ss_pred             hhccCC---------------------------------------------cchhccEEEECCCCCCHHHHHHH-HHhCC
Confidence            332100                                             01489999999999999999999 56899


Q ss_pred             ceEEeeccCCCCceeeeecCCc----------ccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccc
Q 014951          317 PLTQGYGLTESCSGCFTSLADV----------FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGY  386 (415)
Q Consensus       317 ~~~~~yG~tE~~~~~~~~~~~~----------~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY  386 (415)
                      ++++.||+||++.+++......          ....+++|+|+++++++|+| +++..++.+.++.|||+|+||+++.||
T Consensus       319 ~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY  397 (541)
T 1v25_A          319 EVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGY  397 (541)
T ss_dssp             EEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSC
T ss_pred             ceeecccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccc
Confidence            9999999999998776554321          12347899999999999999 787766654457999999999999999


Q ss_pred             cCCchhhhhhhc-CCceecCceEEEcCCCC
Q 014951          387 YKRPDLTEEVIV-DGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       387 ~~~~~~~~~~~~-~g~~~TGDlg~~d~~G~  415 (415)
                      |++|+.|.++|. +|||+|||+|++|+||+
T Consensus       398 ~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~  427 (541)
T 1v25_A          398 YGNEEATRSALTPDGFFRTGDIAVWDEEGY  427 (541)
T ss_dssp             BTCHHHHHTTBCTTSCEEEEEEEEECTTCC
T ss_pred             cCChhhhhhhccCCCCeEcCCEEEEcCCce
Confidence            999999999994 99999999999999995

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=100.00  E-value=2.2e-57  Score=444.33  Aligned_cols=355  Identities=23%  Similarity=0.376  Sum_probs=284.2

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |+++|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|++.+....+....... +.
T Consensus        67 L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~  145 (550)
T 3rix_A           67 MKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKL-PI  145 (550)
T ss_dssp             HHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHC-TT
T ss_pred             HHHhCCCCCCEEEEEcCCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhC-CC
Confidence            45679999999999999999999999999999999999999999999999999999999999998777665544322 45


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCC------C-CCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHH
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTL------D-CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV  153 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~  153 (415)
                      .+.++.++.....         .....+.++......      . .+.....++++++|+|||||||.||+|++||+++.
T Consensus       146 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~  216 (550)
T 3rix_A          146 IQKIIIMDSKTDY---------QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTAC  216 (550)
T ss_dssp             CCEEEETTCSSCB---------TTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHH
T ss_pred             cceEEEEcCCccc---------cCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHH
Confidence            5667666543211         123445555432210      1 11122345789999999999999999999999999


Q ss_pred             HHhhhhhhhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHH
Q 014951          154 AEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDR  232 (415)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~  232 (415)
                      ..+......+  ....+.++|++++++|++|.+++...+.+++.|+++++.+. ++..+++.|+++++|+++++|+++..
T Consensus       217 ~~~~~~~~~~--~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~  294 (550)
T 3rix_A          217 VRFSHARDPI--FGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSF  294 (550)
T ss_dssp             HHHHHHTCTT--TSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHH
T ss_pred             HHHHHhhhhh--ccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHH
Confidence            8876654431  11256789999999999999999888889999999999876 99999999999999999999999998


Q ss_pred             HHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHH
Q 014951          233 IYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRV  312 (415)
Q Consensus       233 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~  312 (415)
                      +++..                                     .....++        ++||.+++||+++++++.+++.+
T Consensus       295 l~~~~-------------------------------------~~~~~~l--------~~lr~i~~gG~~l~~~~~~~~~~  329 (550)
T 3rix_A          295 FAKST-------------------------------------LIDKYDL--------SNLHEIASGGAPLSKEVGEAVAK  329 (550)
T ss_dssp             HHHCC-------------------------------------GGGGSCC--------TTCCEEEECSSCCCHHHHHHHHH
T ss_pred             HHhCc-------------------------------------cccccCc--------ccccEEEEecCCCCHHHHHHHHH
Confidence            86511                                     1111111        48999999999999999999999


Q ss_pred             hcCCc-eEEeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCch
Q 014951          313 TSGAP-LTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPD  391 (415)
Q Consensus       313 ~~~~~-~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~  391 (415)
                      .++.. +++.||+||++..++....... ..+++|+|+++++++|+|.+++  .+++.|+.|||+|+||+++.|||++|+
T Consensus       330 ~~~~~~v~~~YG~TE~~~~~~~~~~~~~-~~~~vG~~~~~~~~~i~d~~~~--~~~~~g~~GEl~v~g~~v~~GY~~~~~  406 (550)
T 3rix_A          330 RFHLPGIRQGYGLTETTSAILITPEGDD-KPGAVGKVVPFFEAKVVDLDTG--KTLGVNQRGELCVRGPMIMSGYVNNPE  406 (550)
T ss_dssp             HTTCSCCEEEEECGGGSSEEEECCTTCC-CTTEEEEECTTCEEEEECTTTC--CBCCTTCCEEEEEESTTSCSEETTCHH
T ss_pred             HcCCCccccccCcCccccceecCCCCCC-CCCCcccccCCcEEEEEeCCCC--cCCCCCCCeEEEEeCCCcchhhcCChh
Confidence            99875 9999999999987776655433 4489999999999999993334  455677999999999999999999999


Q ss_pred             hhhhhh-cCCceecCceEEEcCCCC
Q 014951          392 LTEEVI-VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       392 ~~~~~~-~~g~~~TGDlg~~d~~G~  415 (415)
                      .|.+.| .+|||+|||+|++|+||+
T Consensus       407 ~t~~~~~~~g~~~TGDl~~~~~dG~  431 (550)
T 3rix_A          407 ATNALIDKDGWLHSGDIAYWDEDEH  431 (550)
T ss_dssp             HHHHHBCTTSCEEEEEEEEECTTCC
T ss_pred             hhhhhcCCCCCeecCcEEEEeCCce
Confidence            999999 799999999999999995

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=6.8e-57  Score=440.79  Aligned_cols=349  Identities=25%  Similarity=0.331  Sum_probs=290.8

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |+++|+++||+|+|+++|++++++++|||+++|++++||+|.++.+++.+++++++++++|++....+.+.......  .
T Consensus        69 L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~--~  146 (549)
T 3g7s_A           69 ISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKT--G  146 (549)
T ss_dssp             HHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTS--C
T ss_pred             HHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhC--C
Confidence            45789999999999999999999999999999999999999999999999999999999999998777665544332  2


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCC-CCeEEEEecCCCCCCCceEEeecHHHHHHhhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKK-TNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSV  159 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~  159 (415)
                      .+.++..+..              ...+.++..............+ +|+++|+|||||||.||+|++||+++...+...
T Consensus       147 ~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~  212 (549)
T 3g7s_A          147 VERVFVVGGE--------------VNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQL  212 (549)
T ss_dssp             CCEEEEETCS--------------SSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHH
T ss_pred             CcEEEEeCCC--------------CcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHH
Confidence            4455555432              2345555554432222333344 899999999999999999999999999998887


Q ss_pred             hhhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHH
Q 014951          160 DQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGIS  238 (415)
Q Consensus       160 ~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  238 (415)
                      ...+     .+...|++++++|++|.+++...+.++..|+++++.+. ++..+++.|+++++|+++++|+++..+++...
T Consensus       213 ~~~~-----~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  287 (549)
T 3g7s_A          213 AVAT-----GLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLE  287 (549)
T ss_dssp             HHHH-----CCCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHH
T ss_pred             HHHc-----CCCCCCEEEEeCcHHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhh
Confidence            7666     78899999999999999998888888999999999876 99999999999999999999999999876443


Q ss_pred             HhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHh----c
Q 014951          239 NKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVT----S  314 (415)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~----~  314 (415)
                      ......                                   +        .+++|.+++||+++++++.+++.+.    +
T Consensus       288 ~~~~~~-----------------------------------~--------~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~  324 (549)
T 3g7s_A          288 SSNKTY-----------------------------------D--------WSYLKVFATGAWPVAPALVEKLLKLAAEKC  324 (549)
T ss_dssp             HSCCCC-----------------------------------C--------CTTCCEEEEESSCCCHHHHHHHHHHHHHHS
T ss_pred             hhcccC-----------------------------------C--------ccceeEEEeCCccCCHHHHHHHHHHHHhhc
Confidence            211000                                   0        1389999999999999999999887    5


Q ss_pred             C---CceEEeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCch
Q 014951          315 G---APLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPD  391 (415)
Q Consensus       315 ~---~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~  391 (415)
                      +   .++++.||+||++.+++..........+++|+|+++++++|+|.+++.  +++.|+.|||+|+||+++.|||++|+
T Consensus       325 ~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~  402 (549)
T 3g7s_A          325 NNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGR--ELGVGESGEIVIRGPNIFKGYWKREK  402 (549)
T ss_dssp             SCTTCEEEEEEECGGGSSEEEECCGGGGGGTTSCCEECTTCEEEEECSSSCC--EECTTCCEEEEEESTTSCSEETTCTT
T ss_pred             CCccccccceEeccccchhhhcCCccccCcCCCccccCCCCEEEEEeCCCCc--CCCCCCceEEEEECcchhhhhCCChh
Confidence            6   899999999999988777665554556899999999999999944444  45667999999999999999999999


Q ss_pred             hhhhhh---cCC--ceecCceEEEcCCCC
Q 014951          392 LTEEVI---VDG--WFHTGDIGEWQPMEL  415 (415)
Q Consensus       392 ~~~~~~---~~g--~~~TGDlg~~d~~G~  415 (415)
                      .|.++|   .+|  ||+|||+|++|+||+
T Consensus       403 ~t~~~f~~~~~g~~~~~TGDl~~~~~dG~  431 (549)
T 3g7s_A          403 ENQECWWYDEKGRKFFRTGDVGFIDEEGF  431 (549)
T ss_dssp             GGGTSEEECTTCCEEEEEEEEEEECTTSC
T ss_pred             hhhhhhhccCCCCceEccCcEEEEcCCce
Confidence            999998   677  999999999999995

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=4.4e-57  Score=440.84  Aligned_cols=353  Identities=24%  Similarity=0.363  Sum_probs=285.8

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |+++|+++||+|+++++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++....+.+.......  .
T Consensus        66 L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~  143 (536)
T 3ni2_A           66 LNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES--D  143 (536)
T ss_dssp             HHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH--T
T ss_pred             HHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc--C
Confidence            45789999999999999999999999999999999999999999999999999999999999988766655433211  1


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD  160 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~  160 (415)
                       ..++.++...           .....++++........+.....++|+++|+|||||||.||+|++||+++...+....
T Consensus       144 -~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~  211 (536)
T 3ni2_A          144 -VKVMCVDSAP-----------DGCLHFSELTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQV  211 (536)
T ss_dssp             -CEEEESSCCC-----------TTCEETHHHHTSCGGGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHH
T ss_pred             -ceEEEecCCC-----------CCccCHHHHhhccccccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHH
Confidence             2344444321           1234556665544333344456789999999999999999999999999998876543


Q ss_pred             hhhhhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHH
Q 014951          161 QMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGIS  238 (415)
Q Consensus       161 ~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  238 (415)
                      ... .....+...|++++++|++|.+++.. ++.++..|+++++.+. ++..+++.|+++++|++.++|+++..+++.. 
T Consensus       212 ~~~-~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-  289 (536)
T 3ni2_A          212 DGD-NPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSP-  289 (536)
T ss_dssp             CSS-SCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCS-
T ss_pred             hhc-cccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCc-
Confidence            211 01125778999999999999999865 7788999999999876 9999999999999999999999999876411 


Q ss_pred             HhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhc-CCc
Q 014951          239 NKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAP  317 (415)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~-~~~  317 (415)
                                                          .....++        +++|.+++||+++++++.+++++.+ +.+
T Consensus       290 ------------------------------------~~~~~~l--------~~lr~i~~gGe~l~~~~~~~~~~~~~~~~  325 (536)
T 3ni2_A          290 ------------------------------------DLDKHDL--------SSLRMIKSGGAPLGKELEDTVRAKFPQAR  325 (536)
T ss_dssp             ------------------------------------CGGGSCC--------TTCCEEEEESSCCCHHHHHHHHHHCTTSE
T ss_pred             ------------------------------------ccccCCC--------ccceEEEECCCCCCHHHHHHHHHHCCCCC
Confidence                                                1111111        4899999999999999999999888 889


Q ss_pred             eEEeeccCCCCceeeeecC----CcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhh
Q 014951          318 LTQGYGLTESCSGCFTSLA----DVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLT  393 (415)
Q Consensus       318 ~~~~yG~tE~~~~~~~~~~----~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~  393 (415)
                      +++.||+||++.+++....    ......+++|+|+++++++|+| ++++ .+++.|+.|||+|+||+++.|||++|+.|
T Consensus       326 l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~p~~t  403 (536)
T 3ni2_A          326 LGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVD-PETG-ASLPRNQPGEICIRGDQIMKGYLNDPEAT  403 (536)
T ss_dssp             EEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEEC-TTTC-CBCCTTCCEEEEEESTTSCSEETTCHHHH
T ss_pred             ccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEe-CCCC-cCCCCCCccEEEEeCcccchhhcCChhHH
Confidence            9999999999977654421    1223458999999999999999 4433 45567799999999999999999999999


Q ss_pred             hhhh-cCCceecCceEEEcCCCC
Q 014951          394 EEVI-VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       394 ~~~~-~~g~~~TGDlg~~d~~G~  415 (415)
                      .+.| .+|||+|||+|++|+||+
T Consensus       404 ~~~~~~~g~~~TGDl~~~~~dG~  426 (536)
T 3ni2_A          404 SRTIDKEGWLHTGDIGYIDDDDE  426 (536)
T ss_dssp             HHHBCTTSCEEEEEEEEECTTSC
T ss_pred             HhhccCCCceEcccEEEEcCCce
Confidence            9999 799999999999999995

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=100.00  E-value=3.5e-56  Score=435.07  Aligned_cols=350  Identities=16%  Similarity=0.203  Sum_probs=282.6

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChh----hhhhcCcc
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP----SILSCLPR   76 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~----~~~~~~~~   76 (415)
                      |+++|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.....    ........
T Consensus        72 L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~  151 (544)
T 3o83_A           72 LAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHD  151 (544)
T ss_dssp             HHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHH
T ss_pred             HHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhh
Confidence            45789999999999999999999999999999999999999999999999999999999999986541    11111111


Q ss_pred             CCCCccEEEEecCCCchhhHHhhhcCceeecHHHHHhcC-CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHH
Q 014951           77 CCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAE  155 (415)
Q Consensus        77 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~  155 (415)
                      .....+.++.++....            ...+.++.... ..........++++++|+|||||||.||+|++||+++...
T Consensus       152 ~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~  219 (544)
T 3o83_A          152 VNLSPEIILMLNHQAT------------DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYS  219 (544)
T ss_dssp             TTCCCSEEEEETCCTT------------SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHH
T ss_pred             cccCcceEEEecCCcc------------ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHH
Confidence            1234455555543311            12233333332 1122224567899999999999999999999999999999


Q ss_pred             hhhhhhhhhhccccCCCCCEEEEeCChhhHHHHHH--HHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHH
Q 014951          156 VLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII--ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDR  232 (415)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~--~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~  232 (415)
                      +......+     .+.++|++++++|++|.+++..  ++.++..|+++++.+. ++..+++.|+++++|++.++|+++..
T Consensus       220 ~~~~~~~~-----~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~  294 (544)
T 3o83_A          220 VRASAEIC-----GLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIM  294 (544)
T ss_dssp             HHHHHHHT-----TCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHH
T ss_pred             HHHHHHHh-----CCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHH
Confidence            98877766     7889999999999999999874  7788999999999876 99999999999999999999999998


Q ss_pred             HHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHH
Q 014951          233 IYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRV  312 (415)
Q Consensus       233 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~  312 (415)
                      +++....                                     ...++        ++||.+++||+++++++.+++.+
T Consensus       295 l~~~~~~-------------------------------------~~~~~--------~~lr~i~~gG~~l~~~~~~~~~~  329 (544)
T 3o83_A          295 WLEKAAQ-------------------------------------YKDQI--------QSLKLLQVGGASFPESLARQVPE  329 (544)
T ss_dssp             HHHHHTT-------------------------------------THHHH--------TTCCEEEEESSCCCHHHHTHHHH
T ss_pred             HHhchhh-------------------------------------ccccC--------CcceEEEEcCCCCCHHHHHHHHH
Confidence            8763211                                     11111        48999999999999999999999


Q ss_pred             hcCCceEEeeccCCCCceeeeecCCcccccCcccccc-cCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCch
Q 014951          313 TSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPM-TTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPD  391 (415)
Q Consensus       313 ~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~-~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~  391 (415)
                      .++.++++.||+||++..+...........+++|+|+ ++++++|+| +++..  ++.|+.|||+|+||+++.|||++|+
T Consensus       330 ~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~--~~~g~~GEl~v~g~~v~~GY~~~~~  406 (544)
T 3o83_A          330 VLNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVD-EQYRE--VPEGEIGMLATRGPYTFCGYYQSPE  406 (544)
T ss_dssp             HHCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESCTTCEEEEEC-TTSCB--CCTTCCEEEEEECTTSCSCCTTCHH
T ss_pred             HhCCcEEeeeccccccceeecCCCchhhccCCCceecCCCcEEEEEC-CCCCC--CCCCCeeEEEEecCCcchhhcCChh
Confidence            9999999999999987554433333333457899996 899999999 77754  5567999999999999999999999


Q ss_pred             hhhhhh-cCCceecCceEEEcCCCC
Q 014951          392 LTEEVI-VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       392 ~~~~~~-~~g~~~TGDlg~~d~~G~  415 (415)
                      .|.++| .+|||+|||+|++|+||+
T Consensus       407 ~t~~~f~~~g~~~TGDlg~~~~dG~  431 (544)
T 3o83_A          407 HNSQVFDEDNYYYSGDLVQRTPDGN  431 (544)
T ss_dssp             HHHHHBCTTCCEEEEEEEEECTTSC
T ss_pred             hhhhhCCCCCCeEcCCEEEEcCCCC
Confidence            999999 799999999999999995

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=2.4e-56  Score=436.41  Aligned_cols=354  Identities=24%  Similarity=0.382  Sum_probs=281.5

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |+++|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.+++++++++++|++.+..+.+....... +.
T Consensus        69 L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~  147 (548)
T 2d1s_A           69 LQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTV-TT  147 (548)
T ss_dssp             HHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHS-TT
T ss_pred             HHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCC-CC
Confidence            35679999999999999999999999999999999999999999999999999999999999998776655432211 22


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCC-CCCCCCC-----C-CCeEEEEecCCCCCCCceEEeecHHHH
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLD-CELPPKK-----K-TNISTIMYTSGTTGEPKGVVLTNQAIV  153 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~-~~~~~i~~TSGtTG~pK~v~~th~~l~  153 (415)
                      ...++.++.....         .....++++....... .+.....     + +++++|+|||||||.||+|++||+++.
T Consensus       148 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~  218 (548)
T 2d1s_A          148 IKTIVILDSKVDY---------RGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIV  218 (548)
T ss_dssp             CCEEEETTCSSCB---------TTBCBHHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHH
T ss_pred             CCEEEEeCCcccc---------cccccHHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHH
Confidence            3455555432100         0123455555433111 1111112     4 899999999999999999999999999


Q ss_pred             HHhhhhhhhhhhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHH
Q 014951          154 AEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYD  231 (415)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~  231 (415)
                      ..+......+  ....+.++|++++++|++|.+++.. ++.++ .|+++++.+. ++..+++.|+++++|+++++|+++.
T Consensus       219 ~~~~~~~~~~--~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~  295 (548)
T 2d1s_A          219 TRFSHARDPI--YGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFA  295 (548)
T ss_dssp             HHHHHHTCTT--TSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHH
T ss_pred             HHHHHhhchh--hccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHH
Confidence            8887655431  0126678999999999999999876 55667 9999998876 9999999999999999999999999


Q ss_pred             HHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHH
Q 014951          232 RIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLR  311 (415)
Q Consensus       232 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~  311 (415)
                      .+.+..                                     .....++        +++|.+++||+++++++.+++.
T Consensus       296 ~l~~~~-------------------------------------~~~~~~l--------~~lr~i~~gG~~l~~~~~~~~~  330 (548)
T 2d1s_A          296 ILNKSE-------------------------------------LLNKYDL--------SNLVEIASGGAPLSKEVGEAVA  330 (548)
T ss_dssp             HHHHCS-------------------------------------CGGGSCC--------TTCCEEEECSSCCCHHHHHHHH
T ss_pred             HHHhCc-------------------------------------ccccccc--------cceeEEEEcCccCCHHHHHHHH
Confidence            886410                                     0011111        4899999999999999999999


Q ss_pred             Hhc-CCceEEeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCc
Q 014951          312 VTS-GAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRP  390 (415)
Q Consensus       312 ~~~-~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~  390 (415)
                      +.+ +.++++.||+||++..++..... ....+++|+|+|+++++|+|.+++  .+++.|+.|||+|+||+++.|||++|
T Consensus       331 ~~~~~~~i~~~YG~TE~~~~~~~~~~~-~~~~~~~G~~~~~~~~~i~d~~~~--~~~~~g~~GEl~v~g~~v~~GY~~~~  407 (548)
T 2d1s_A          331 RRFNLPGVRQGYGLTETTSAIIITPEG-DDKPGASGKVVPLFKAKVIDLDTK--KSLGPNRRGEVCVKGPMLMKGYVNNP  407 (548)
T ss_dssp             HHTTCSCCEEEEECGGGSSEEEECCTT-CCCTTCCBEECTTCEEEEECTTTC--CBCCTTCCEEEEEESTTSCSEETTCH
T ss_pred             HHcCCCceeeccccccccceeeecCcc-cCCCCCCCccCCCceEEEEeCCcC--ccCCCCCCeEEEECCHHHhhhhcCCh
Confidence            988 67899999999998877664333 234589999999999999994344  45567799999999999999999999


Q ss_pred             hhhhhhh-cCCceecCceEEEcCCCC
Q 014951          391 DLTEEVI-VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       391 ~~~~~~~-~~g~~~TGDlg~~d~~G~  415 (415)
                      +.|.+.| .+|||+|||+|++|+||+
T Consensus       408 ~~t~~~f~~~g~~~TGDl~~~~~dG~  433 (548)
T 2d1s_A          408 EATKELIDEEGWLHTGDIGYYDEEKH  433 (548)
T ss_dssp             HHHHHHBCTTSCEEEEEEEEECTTCC
T ss_pred             HHhhhcccCCcEEEccCEEEEcCCCe
Confidence            9999999 699999999999999995

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=1.4e-56  Score=437.42  Aligned_cols=346  Identities=18%  Similarity=0.195  Sum_probs=275.8

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChh-----hhhhcCc
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP-----SILSCLP   75 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~-----~~~~~~~   75 (415)
                      |+++|+++||+|+++++|++++++++|||+++|++++|++|.++.+++.++++.++++++|++.+...     .+.....
T Consensus        67 L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~  146 (539)
T 1mdb_A           67 FQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQS  146 (539)
T ss_dssp             HHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHH
T ss_pred             HHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHh
Confidence            35679999999999999999999999999999999999999999999999999999999999875321     1111111


Q ss_pred             cCCCCccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHH
Q 014951           76 RCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAE  155 (415)
Q Consensus        76 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~  155 (415)
                       ..+..+.++..+...               .+.++..............++|+++++|||||||.||||++||+++...
T Consensus       147 -~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~  210 (539)
T 1mdb_A          147 -KLPTLKNIIVAGEAE---------------EFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYS  210 (539)
T ss_dssp             -HCTTCCCEEEESCCT---------------TSEEGGGCCCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHH
T ss_pred             -cCCCccEEEEcCCcc---------------chhhhhhccccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHH
Confidence             113334444433211               0111111111111234457899999999999999999999999999998


Q ss_pred             hhhhhhhhhhccccCCCCCEEEEeCChhhHHHHHH--HHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHH
Q 014951          156 VLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII--ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDR  232 (415)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~--~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~  232 (415)
                      +......+     .+.++|++++.+|++|.+++..  ++.+++.|+++++.+. ++..+++.|+++++|+++++|+++..
T Consensus       211 ~~~~~~~~-----~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~  285 (539)
T 1mdb_A          211 LKRSVEVC-----WLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMV  285 (539)
T ss_dssp             HHHHHHHH-----TCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHH
T ss_pred             HHHHHHhh-----CCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHH
Confidence            88776665     6789999999999999999874  7888999999999876 99999999999999999999999999


Q ss_pred             HHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHH
Q 014951          233 IYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRV  312 (415)
Q Consensus       233 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~  312 (415)
                      +++.......                                             ..++||.+++||+++++++.+++.+
T Consensus       286 l~~~~~~~~~---------------------------------------------~l~~lr~~~~gG~~l~~~~~~~~~~  320 (539)
T 1mdb_A          286 WMDAASSRRD---------------------------------------------DLSSLQVLQVGGAKFSAEAARRVKA  320 (539)
T ss_dssp             HHHHHHHCCC---------------------------------------------CCTTCCEEEEESSCCCHHHHTTHHH
T ss_pred             HHhCccccCC---------------------------------------------CccceeEEEEcCCCCCHHHHHHHHH
Confidence            8763321100                                             0148999999999999999999999


Q ss_pred             hcCCceEEeeccCCCCceeeeecCCcccccCcccccccC-eEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCch
Q 014951          313 TSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTT-VEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPD  391 (415)
Q Consensus       313 ~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g-~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~  391 (415)
                      .+++++++.||+||++..+...........+++|+|+++ .+++|+| +++.  +++.|+.|||+|+||+++.|||++|+
T Consensus       321 ~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~--~~~~g~~GEl~v~g~~v~~GY~~~~~  397 (539)
T 1mdb_A          321 VFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWD-DHDR--DVKPGETGHLLTRGPYTIRGYYKAEE  397 (539)
T ss_dssp             HTCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEEC-TTSC--BCCTTCCEEEEEECTTSCSSCTTCHH
T ss_pred             HhCCcEEEEEcCCCCcccccCCCCcHHhcCCCCCcccCCCceEEEEC-CCCC--CCcCCCcceEEeeCcccchhhcCChh
Confidence            899999999999996543322111112234789999976 5899999 7765  45567999999999999999999999


Q ss_pred             hhhhhh-cCCceecCceEEEcCCCC
Q 014951          392 LTEEVI-VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       392 ~~~~~~-~~g~~~TGDlg~~d~~G~  415 (415)
                      .|.++| .+|||+|||+|++|+||+
T Consensus       398 ~t~~~f~~~g~~~TGDlg~~~~dG~  422 (539)
T 1mdb_A          398 HNAASFTEDGFYRTGDIVRLTRDGY  422 (539)
T ss_dssp             HHHHHBCTTSCEEEEEEEEECTTSC
T ss_pred             hhhhhccCCCCeecCceEEECCCCc
Confidence            999999 699999999999999995

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=2.6e-56  Score=433.34  Aligned_cols=344  Identities=23%  Similarity=0.326  Sum_probs=278.4

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |+++|+++||+|+++++|++++++++|||+++|++++||++.++.+++.+++++++++++|++....+.+....... ..
T Consensus        60 L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~  138 (517)
T 3r44_A           60 LTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQA-DP  138 (517)
T ss_dssp             HHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSS-SC
T ss_pred             HHHcCCCCcCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhcc-CC
Confidence            45789999999999999999999999999999999999999999999999999999999999987766554332211 11


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD  160 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~  160 (415)
                      ...++.+..               ...+.+.........+.....++|+++|+|||||||.||+|++||+++...+....
T Consensus       139 ~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~  203 (517)
T 3r44_A          139 PGTVTDWIG---------------ADSLAERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWA  203 (517)
T ss_dssp             CTTCCEEEE---------------HHHHHHHHHHCCCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHH
T ss_pred             ccEEEEccC---------------cccHHHHhhccCcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHH
Confidence            111111110               11233444333333344556789999999999999999999999999999998877


Q ss_pred             hhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHHH
Q 014951          161 QMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISN  239 (415)
Q Consensus       161 ~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~  239 (415)
                      ..+     .+..+|++++++|++|.+++...+.+++.|+++++.+. ++..+++.|+++++|++.++|+++..+.+....
T Consensus       204 ~~~-----~~~~~d~~l~~~p~~~~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~  278 (517)
T 3r44_A          204 STI-----DVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEF  278 (517)
T ss_dssp             HHS-----CCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHH
T ss_pred             Hhc-----CCCCCCEEEEeCchHHHHHHHHHHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccc
Confidence            666     78899999999999999999875555559999998876 999999999999999999999999988652111


Q ss_pred             hhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCCceE
Q 014951          240 KISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLT  319 (415)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~~  319 (415)
                                                           .        ....+++|.+++||+++++++.+++.+. +.+++
T Consensus       279 -------------------------------------~--------~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~  312 (517)
T 3r44_A          279 -------------------------------------A--------ELDAPDFRYFITGGAPMPEALIKIYAAK-NIEVV  312 (517)
T ss_dssp             -------------------------------------H--------HCCCTTCCEEEECSSCCCHHHHHHHHHT-TCEEE
T ss_pred             -------------------------------------c--------cCCCCcccEEEECCCCCCHHHHHHHHhc-CCcEE
Confidence                                                 0        1112489999999999999999999886 99999


Q ss_pred             EeeccCCCCceeeeecCCc-ccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhhhhhhc
Q 014951          320 QGYGLTESCSGCFTSLADV-FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV  398 (415)
Q Consensus       320 ~~yG~tE~~~~~~~~~~~~-~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~~~~~  398 (415)
                      +.||+||+++.++...... ....+++|+|.++++++|+| +++...+  .| .|||+|+||+++.|||++|+.|.++|.
T Consensus       313 ~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~--~g-~GEl~v~g~~v~~GY~~~p~~t~~~f~  388 (517)
T 3r44_A          313 QGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRG-DDGVIRE--HG-EGEVVIKSDILLKEYWNRPEATRDAFD  388 (517)
T ss_dssp             EEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEEC-TTSCEES--SE-EEEEEEEETTSCSEETTCHHHHHHTEE
T ss_pred             EeecccccccceeecCCccccccCCCCCcCCCCeEEEEEC-CCCCCCC--CC-CeEEEEeCcchhhhhCCChhhhHhhhc
Confidence            9999999988766554333 34458999999999999999 7665444  34 799999999999999999999999999


Q ss_pred             CCceecCceEEEcCCCC
Q 014951          399 DGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       399 ~g~~~TGDlg~~d~~G~  415 (415)
                      +|||+|||+|++|+||+
T Consensus       389 ~g~~~TGDl~~~~~dG~  405 (517)
T 3r44_A          389 NGWFRTGDIGEIDDEGY  405 (517)
T ss_dssp             TTEEEEEEEEEECTTSC
T ss_pred             CCCEecceeEEEcCCee
Confidence            99999999999999995

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=1.4e-56  Score=433.78  Aligned_cols=344  Identities=23%  Similarity=0.366  Sum_probs=275.5

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |+++|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.+..+.+....... . 
T Consensus        45 L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~-~-  122 (503)
T 4fuq_A           45 LVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKV-G-  122 (503)
T ss_dssp             HHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHH-T-
T ss_pred             HHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhc-C-
Confidence            45789999999999999999999999999999999999999999999999999999999999987655443322211 0 


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD  160 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~  160 (415)
                       ..+..++....             ..+.+...............++|+++|+|||||||.||+|++||+++...+....
T Consensus       123 -~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~  188 (503)
T 4fuq_A          123 -ATVETLGPDGR-------------GSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLV  188 (503)
T ss_dssp             -CEEEECCTTSC-------------SHHHHHHHTSCSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHH
T ss_pred             -ceEEEecCCcc-------------cccchhhhcCCCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHH
Confidence             13333332211             1111222222222233456789999999999999999999999999999988877


Q ss_pred             hhhhhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHH
Q 014951          161 QMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGIS  238 (415)
Q Consensus       161 ~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  238 (415)
                      ..+     .+.++|++++.+|++|.+++.. .+.+++.|+++++.+. ++..+++.++  ++|+++++|+++..+++...
T Consensus       189 ~~~-----~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~  261 (503)
T 4fuq_A          189 DYW-----RFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPR  261 (503)
T ss_dssp             HHT-----TCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTT
T ss_pred             HHh-----CCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCC
Confidence            666     7889999999999999998764 6778899999998876 9999999998  89999999999998864110


Q ss_pred             HhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCCce
Q 014951          239 NKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPL  318 (415)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~  318 (415)
                                                           ....+        .+++|.+++||+++++++.+.+.+.++.++
T Consensus       262 -------------------------------------~~~~~--------~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~  296 (503)
T 4fuq_A          262 -------------------------------------LTKET--------TGHMRLFISGSAPLLADTHREWSAKTGHAV  296 (503)
T ss_dssp             -------------------------------------CSTTT--------TTTCCEEEECSSCCCHHHHHHHHHHHSCCE
T ss_pred             -------------------------------------ccccc--------hhhcEEEEECCCCCCHHHHHHHHHHhCCCc
Confidence                                                 00000        148999999999999999999999999999


Q ss_pred             EEeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhhhhhh-
Q 014951          319 TQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-  397 (415)
Q Consensus       319 ~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~~~~-  397 (415)
                      ++.||+||++..+.... +.....+++|+|+++++++|+|.+++  .+++.|+.|||+|+||+++.|||++|+.|.++| 
T Consensus       297 ~~~YG~TE~~~~~~~~~-~~~~~~~~~G~p~~~~~~~i~d~~~g--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~  373 (503)
T 4fuq_A          297 LERYGMTETNMNTSNPY-DGDRVPGAVGPALPGVSARVTDPETG--KELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFR  373 (503)
T ss_dssp             EECCEETTTEECBCCCS-SSCCCTTEEEEBCTTCEEEEECTTTC--CBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBC
T ss_pred             cceEcccccCcccccCC-CCCCcCCccccCCCCeEEEEEECCCC--CCCcCCCceEEEEECCchhhhhcCChhhhHhhhC
Confidence            99999999987654332 33334589999999999999994344  455677999999999999999999999999999 


Q ss_pred             cCCceecCceEEEcCCCC
Q 014951          398 VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       398 ~~g~~~TGDlg~~d~~G~  415 (415)
                      .+|||+|||+|++|+||+
T Consensus       374 ~~g~~~TGDl~~~~~dG~  391 (503)
T 4fuq_A          374 DDGFFITGDLGKIDERGY  391 (503)
T ss_dssp             TTSCEEEEEEEEECTTCE
T ss_pred             CCCCeEcceeEEEcCCCc
Confidence            599999999999999984

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=8e-56  Score=434.74  Aligned_cols=349  Identities=18%  Similarity=0.188  Sum_probs=283.0

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCCh--hhhhhcCccCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI--PSILSCLPRCC   78 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~--~~~~~~~~~~~   78 (415)
                      |+++|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.+..  ..+....... 
T Consensus       103 L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~-  181 (580)
T 3etc_A          103 FVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAEC-  181 (580)
T ss_dssp             HHHTTCCTTCEEEEECTTCTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHH-
T ss_pred             HHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhC-
Confidence            4678999999999999999999999999999999999999999999999999999999999988764  4443332221 


Q ss_pred             CCc-cEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCC----CCCCCCCeEEEEecCCCCCCCceEEeecHHHH
Q 014951           79 LYL-KTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCEL----PPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV  153 (415)
Q Consensus        79 ~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~  153 (415)
                      +.. ..++.++...          ...+.++.+...........    ....++|+++|+|||||||.||+|.++|.+++
T Consensus       182 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~  251 (580)
T 3etc_A          182 GDIPLKKAKVGGDV----------LEGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPL  251 (580)
T ss_dssp             CSCCCEEEEESSSC----------CTTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHH
T ss_pred             CCcceEEEEeCCcc----------ccccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHH
Confidence            222 3455554321          11245566665443222111    24678999999999999999999999999988


Q ss_pred             HHhhhhhhhhhhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeC---CCHHHHHHHHHhhCCeEEEeCcHH
Q 014951          154 AEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWR---GDVRYLMEDIQELKPTMFSGVPRV  229 (415)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~---~~~~~~~~~i~~~~~t~~~~~P~~  229 (415)
                      ..+......+     .+...+++++..|++|..+.+. ++.++..|+++++.+   .++..+++.|+++++|+++++|++
T Consensus       252 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~  326 (580)
T 3etc_A          252 GHILTAKYWQ-----NVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTI  326 (580)
T ss_dssp             HHHHHHHTTS-----CCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHH
T ss_pred             HHHHHHHHhh-----CCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHH
Confidence            8776543333     6788999999999999988875 677899999998874   399999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHH
Q 014951          230 YDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEF  309 (415)
Q Consensus       230 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~  309 (415)
                      ++.+.+.                                      .....+        .++||.+++||+++++++.++
T Consensus       327 ~~~l~~~--------------------------------------~~~~~~--------l~~lr~i~~gGe~l~~~~~~~  360 (580)
T 3etc_A          327 YRFLIKE--------------------------------------DLSHYN--------FSTLKYAVVAGEPLNPEVFNR  360 (580)
T ss_dssp             HHHHHTS--------------------------------------CC---C--------CTTCCEEEECSSCCCHHHHHH
T ss_pred             HHHHHhc--------------------------------------ccccCC--------CccceEEEEccCCCCHHHHHH
Confidence            9887541                                      001111        148999999999999999999


Q ss_pred             HHHhcCCceEEeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEec-----CCccc
Q 014951          310 LRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRG-----NTLFS  384 (415)
Q Consensus       310 ~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~-----~~~~~  384 (415)
                      +.+.+++++++.||+||++..++..... ....+++|+|+||++++|+| +++.  +++.|+.|||+|+|     ++++.
T Consensus       361 ~~~~~g~~i~~~YG~TE~~~~~~~~~~~-~~~~~~~G~p~~~~~v~ivd-~~g~--~~~~g~~GEl~v~~~~g~~~~~~~  436 (580)
T 3etc_A          361 FLEFTGIKLMEGFGQTETVVTIATFPWM-EPKPGSIGKPTPGYKIELMD-RDGR--LCEVGEEGEIVINTMEGKPVGLFV  436 (580)
T ss_dssp             HHHHHSCCCEEEECCTTSSCCEECCTTS-CCCTTCCBEECTTCEEEEEC-TTSC--BCCTTCCEEEEEECTTCCCTTCCC
T ss_pred             HHHHhCCeEecccccccccceeecCCCC-CCCCCccccCCCCCEEEEEC-CCCC--CCCCCCceEEEEecCCCCCCeeec
Confidence            9998999999999999998766554433 33458999999999999999 7765  45567999999997     78999


Q ss_pred             cccCCchhhhhhhcCCceecCceEEEcCCCC
Q 014951          385 GYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       385 gY~~~~~~~~~~~~~g~~~TGDlg~~d~~G~  415 (415)
                      |||++|+.|.+.|.+|||+|||+|++|+||+
T Consensus       437 gY~~~p~~t~~~f~~gwy~TGDlg~~d~dG~  467 (580)
T 3etc_A          437 HYGKDPERTEETWHDGYYHTGDMAWMDEDGY  467 (580)
T ss_dssp             EETTCHHHHHHHEETTEEEEEEEEEECTTSC
T ss_pred             cccCCHhHHHhhcCCCEEecCcEEEECCCCc
Confidence            9999999999999999999999999999996

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=100.00  E-value=5.3e-55  Score=428.36  Aligned_cols=347  Identities=18%  Similarity=0.253  Sum_probs=282.8

Q ss_pred             CccC-CCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCC
Q 014951            1 MRSR-GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCL   79 (415)
Q Consensus         1 L~~~-Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~   79 (415)
                      |++. |+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.+..+.+...... .+
T Consensus        90 L~~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~  168 (570)
T 3c5e_A           90 LSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASE-CP  168 (570)
T ss_dssp             HHTTTCCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGG-CT
T ss_pred             HHHccCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhc-CC
Confidence            3456 999999999999999999999999999999999999999999999999999999999999887766544332 24


Q ss_pred             CccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHH--Hhh
Q 014951           80 YLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA--EVL  157 (415)
Q Consensus        80 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~--~~~  157 (415)
                      .++.++.++....          .....++++..............++++++|+|||||||.||+|+++|+ ++.  ...
T Consensus       169 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~  237 (570)
T 3c5e_A          169 SLRIKLLVSEKSC----------DGWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKM  237 (570)
T ss_dssp             TCCEEEEESSSCC----------TTSEEHHHHHHHSCSCCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHH
T ss_pred             ceeEEEEecccCc----------cccccHHHHhhcccccccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhh
Confidence            4556666654211          013345665544322223345678999999999999999999999999 544  333


Q ss_pred             hhhhhhhhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeC---CCHHHHHHHHHhhCCeEEEeCcHHHHHH
Q 014951          158 SVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWR---GDVRYLMEDIQELKPTMFSGVPRVYDRI  233 (415)
Q Consensus       158 ~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l  233 (415)
                      .. ..+     .+..+|++++.+|++|.+++.. ++.+++.|+++++.+   .++..+++.|+++++|+++++|++++.+
T Consensus       238 ~~-~~~-----~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l  311 (570)
T 3c5e_A          238 DA-GWT-----GLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRML  311 (570)
T ss_dssp             HT-TTT-----SCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHH
T ss_pred             hh-hhc-----CCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHH
Confidence            32 333     6788999999999999999874 778899999999885   3999999999999999999999999988


Q ss_pred             HHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHh
Q 014951          234 YTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVT  313 (415)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~  313 (415)
                      ++.   .                                   ....        ..+++|.+++||+++++++.+++.+.
T Consensus       312 ~~~---~-----------------------------------~~~~--------~~~~lr~i~~gGe~l~~~~~~~~~~~  345 (570)
T 3c5e_A          312 LQQ---D-----------------------------------LSSY--------KFPHLQNCVTVGESLLPETLENWRAQ  345 (570)
T ss_dssp             HTS---C-----------------------------------TTTC--------CCTTCCEEEEESSCCCHHHHHHHHHH
T ss_pred             Hhc---c-----------------------------------cccc--------ccccceEEEEcCCcCCHHHHHHHHHH
Confidence            641   0                                   0000        01489999999999999999999988


Q ss_pred             cCCceEEeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEe-----cCCccccccC
Q 014951          314 SGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLR-----GNTLFSGYYK  388 (415)
Q Consensus       314 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~-----~~~~~~gY~~  388 (415)
                      +++++++.||+||++..++..... ....+++|+|+++++++|+| +++.  +++.|+.|||+|+     |++++.|||+
T Consensus       346 ~g~~i~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~v~i~d-~~g~--~~~~G~~GEl~v~~~~~~g~~v~~GY~~  421 (570)
T 3c5e_A          346 TGLDIRESYGQTETGLTCMVSKTM-KIKPGYMGTAASCYDVQIID-DKGN--VLPPGTEGDIGIRVKPIRPIGIFSGYVD  421 (570)
T ss_dssp             HSCCCEEEEEETTTEEEEECCTTS-CCCTTCCCEECTTCCEEEEC-TTSC--BCCTTCCEEEEEECSSBCCTTCCCEETT
T ss_pred             hCCchhhccchhhcccceecCccc-ccCCCcccccCCCceEEEEC-CCCC--CCCCCCCCeeEEeccCCCCchhhccccC
Confidence            899999999999998766554332 23458999999999999999 7765  4556799999999     9999999999


Q ss_pred             CchhhhhhhcCCceecCceEEEcCCCC
Q 014951          389 RPDLTEEVIVDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       389 ~~~~~~~~~~~g~~~TGDlg~~d~~G~  415 (415)
                      +|+.|.+.|.+|||+|||+|++|+||+
T Consensus       422 ~~~~t~~~f~~~~~~TGDlg~~d~dG~  448 (570)
T 3c5e_A          422 NPDKTAANIRGDFWLLGDRGIKDEDGY  448 (570)
T ss_dssp             CHHHHHHTEETTEEEEEEEEEECTTSC
T ss_pred             ChhHhhhhhcCCccccceeEEEcCCce
Confidence            999999999999999999999999995

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=100.00  E-value=3.3e-55  Score=424.69  Aligned_cols=336  Identities=21%  Similarity=0.282  Sum_probs=267.5

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEE--cCCChhhhhhcCccCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFV--QENKIPSILSCLPRCC   78 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~--~~~~~~~~~~~~~~~~   78 (415)
                      |+++|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+  +.+..+.+.....   
T Consensus        46 L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~---  122 (504)
T 1t5h_X           46 LHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS---  122 (504)
T ss_dssp             HHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHCC---
T ss_pred             HHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhccc---
Confidence            45689999999999999999999999999999999999999999999999999999999999  6665444312111   


Q ss_pred             CCccEEEEecCCCchhhHHhhhcCceeecHHHHHhcC-----CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHH
Q 014951           79 LYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLG-----TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV  153 (415)
Q Consensus        79 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~  153 (415)
                       ..+ ++.+                     +++....     ..........++++++|+|||||||.||+|++||+++.
T Consensus       123 -~~~-~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~  179 (504)
T 1t5h_X          123 -GAR-IIFL---------------------GDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAE  179 (504)
T ss_dssp             -CCE-EEEG---------------------GGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHH
T ss_pred             -cce-eEEe---------------------cchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHH
Confidence             111 2222                     1111110     11111234567999999999999999999999999999


Q ss_pred             HHhhhhhhhhhhccccC--CCCCEEEEeCChhhHHHHH-HHHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHH
Q 014951          154 AEVLSVDQMFVVTGKVC--SEEDTYFSFLPLAHIYDQI-IETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRV  229 (415)
Q Consensus       154 ~~~~~~~~~~~~~~~~~--~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~  229 (415)
                      ..+......+     .+  .+.|++++.+|++|.+++. .++.+++.|+++++.+. ++..+++.|+++++|+++++|++
T Consensus       180 ~~~~~~~~~~-----~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~  254 (504)
T 1t5h_X          180 SRVLFMSTQV-----GLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTH  254 (504)
T ss_dssp             HHHHHHHHTT-----CCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHH
T ss_pred             HHHHHHHHhh-----CCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHH
Confidence            8887765554     45  7889999999999999985 47888999999999876 99999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHH
Q 014951          230 YDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEF  309 (415)
Q Consensus       230 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~  309 (415)
                      +..+++.......                                   ..        ..++||.+++||+++++++.++
T Consensus       255 ~~~l~~~~~~~~~-----------------------------------~~--------~l~~lr~~~~gG~~l~~~~~~~  291 (504)
T 1t5h_X          255 LDALAAAAAHAGS-----------------------------------SL--------KLDSLRHVTFAGATMPDAVLET  291 (504)
T ss_dssp             HHHHHHHHCCTTC-----------------------------------CC--------CCTTCCEEEECCTTCCHHHHHH
T ss_pred             HHHHHhhhccccc-----------------------------------cc--------cCccccEEEEcCCcCCHHHHHH
Confidence            9998753210000                                   00        0148999999999999999999


Q ss_pred             HHHhcCCceEEeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCC-CCCCCCCCCCCeEEEe-cCCcccccc
Q 014951          310 LRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEM-GYDALSSVPRGEICLR-GNTLFSGYY  387 (415)
Q Consensus       310 ~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~-~~~~~~~~~~Gel~v~-~~~~~~gY~  387 (415)
                      +.+.++..+++.||+||++ .+....   ....+++|.|.++++++|++ +++ ...+++.|+.|||+|+ |+.++.||+
T Consensus       292 ~~~~~~~~~~~~YG~TE~~-~~~~~~---~~~~~~~g~p~~~~~~~i~~-~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~  366 (504)
T 1t5h_X          292 VHQHLPGEKVNIYGTTEAM-NSLYMR---QPKTGTEMAPGFFSEVRIVR-IGGGVDEIVANGEEGELIVAASDSAFVGYL  366 (504)
T ss_dssp             HHHHCCSEEEEEEEETTTE-EEEEEE---SCSSSSEEBCCTTCCEEEEC-TTSCTTCBCCTTCCEEEEEECCTTSCCCBT
T ss_pred             HHHhcCcceeeeecccccc-cccccc---CCCCCccccCCCCCceeEEe-ccCCCCCcCCCCCcceEEEeCCceeeceec
Confidence            9999999999999999993 333222   22348899999999999999 444 2245667799999999 999999999


Q ss_pred             CCchhhhhhhcCCceecCceEEEcCCCC
Q 014951          388 KRPDLTEEVIVDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       388 ~~~~~~~~~~~~g~~~TGDlg~~d~~G~  415 (415)
                      ++|+.|.++|.+|||+|||+|++|+||+
T Consensus       367 ~~~~~t~~~f~~g~~~TGDlg~~~~dG~  394 (504)
T 1t5h_X          367 NQPQATAEKLQDGWYRTSDVAVWTPEGT  394 (504)
T ss_dssp             TCHHHHHHHEETTEEEEEEEEEECTTSC
T ss_pred             CCchhhhhhhcCCccccCcEEEECCCce
Confidence            9999999999999999999999999995

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=100.00  E-value=4.4e-55  Score=426.47  Aligned_cols=352  Identities=18%  Similarity=0.247  Sum_probs=275.7

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |+++|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.+....+....... ..
T Consensus        65 L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~  143 (529)
T 2v7b_A           65 LRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESA-EH  143 (529)
T ss_dssp             HHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---
T ss_pred             HHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhc-cc
Confidence            45789999999999999999999999999999999999999999999999999999999999987765554432211 12


Q ss_pred             c-cEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHH-HHHhhh
Q 014951           81 L-KTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAI-VAEVLS  158 (415)
Q Consensus        81 ~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l-~~~~~~  158 (415)
                      . +.++.++....        .......++++..............++|+++++|||||||.||+|++||+++ ......
T Consensus       144 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~  215 (529)
T 2v7b_A          144 DGCQLIVSQPRES--------EPRLAPLFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELY  215 (529)
T ss_dssp             -CCEEEEECC--------------CCCBHHHHHHTSCCCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHT
T ss_pred             cCceEEEeccccc--------ccccccchhhhhccCCCcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHH
Confidence            2 34444433210        0001224566554332222334567899999999999999999999999999 555555


Q ss_pred             hhhhhhhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeC-C-CHHHHHHHHHhhCCeEEEeCcHHHHHHHH
Q 014951          159 VDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWR-G-DVRYLMEDIQELKPTMFSGVPRVYDRIYT  235 (415)
Q Consensus       159 ~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~-~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~  235 (415)
                      ....+     .+.+.|++++.+|++|.+++.. ++.++..|+++++.+ . ++..+++.|+++++|+++++|+++..+++
T Consensus       216 ~~~~~-----~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~  290 (529)
T 2v7b_A          216 AKPIL-----GIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLV  290 (529)
T ss_dssp             CCCCC-----CCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHT
T ss_pred             hhhcc-----CCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHh
Confidence            44333     6788999999999999999875 567899999999873 3 99999999999999999999999988754


Q ss_pred             HHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcC
Q 014951          236 GISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG  315 (415)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~  315 (415)
                      ...                                  .....           ..++|.+++||+++++++.+++.+.++
T Consensus       291 ~~~----------------------------------~~~~~-----------~~~lr~~~~gGe~l~~~~~~~~~~~~g  325 (529)
T 2v7b_A          291 SPN----------------------------------LPARA-----------DVAIRICTSAGEALPREIGERFTAHFG  325 (529)
T ss_dssp             CTT----------------------------------CCCGG-----------GCCCCEEEECSSCCCHHHHHHHHHHHS
T ss_pred             Ccc----------------------------------ccccc-----------CCceEEEEEcCCCCCHHHHHHHHHHhC
Confidence            100                                  00000           027999999999999999999999899


Q ss_pred             CceEEeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhhhh
Q 014951          316 APLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEE  395 (415)
Q Consensus       316 ~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~~  395 (415)
                      +++++.||+||++.+++...... ...+++|+|+++++++|+| +++..  ++.|+.|||+|+||+++.|||++++.|.+
T Consensus       326 ~~i~~~YG~TE~~~~~~~~~~~~-~~~~~~G~p~~~~~~~i~d-~~g~~--~~~g~~GEl~v~g~~~~~gY~~~~~~t~~  401 (529)
T 2v7b_A          326 CEILDGIGSTEMLHIFLSNRAGA-VEYGTTGRPVPGYEIELRD-EAGHA--VPDGEVGDLYIKGPSAAVMYWNNREKSRA  401 (529)
T ss_dssp             CCEEEEEECTTTSSEEEECCTTC-CCTTSCCEECTTCEEEEEC-TTSCB--CCTTSCEEEEEECTTCCCCBTTCHHHHHH
T ss_pred             CceeeeEchhhcCceeeccccCC-CccCCcccCCCCCEEEEEC-CCCCC--CCCCCccEEEEecCCcccccCCChHHHHH
Confidence            99999999999977665544333 3448999999999999999 77754  45679999999999999999999999999


Q ss_pred             hhcCCceecCceEEEcCCCC
Q 014951          396 VIVDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       396 ~~~~g~~~TGDlg~~d~~G~  415 (415)
                      .|.+|||+|||+|++|+||+
T Consensus       402 ~f~~~~~~TGDl~~~~~~G~  421 (529)
T 2v7b_A          402 TFLGEWIRSGDKYCRLPNGC  421 (529)
T ss_dssp             HEETTEEEEEEEEEECTTSC
T ss_pred             hhhcCCcccCceEEECCCcc
Confidence            99999999999999999985

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=100.00  E-value=7.1e-55  Score=423.00  Aligned_cols=340  Identities=21%  Similarity=0.303  Sum_probs=276.5

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |+++|+++||+|+++++|++++++++|||+++|++++||++.++.+++.+++++++++++|++.+....+....... ..
T Consensus        48 L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~  126 (509)
T 3ivr_A           48 LLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSL-GG  126 (509)
T ss_dssp             HHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGC-SS
T ss_pred             HHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhccc-CC
Confidence            45789999999999999999999999999999999999999999999999999999999999998877644443322 45


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHh-cCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQ-LGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSV  159 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~  159 (415)
                      .+.++.++....              .+.++.. ............++|+++|+|||||||.||+|++||+++...+...
T Consensus       127 ~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~  192 (509)
T 3ivr_A          127 VKKAYAIGDGSG--------------PFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSL  192 (509)
T ss_dssp             CCEEEESSCCCS--------------SCEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHH
T ss_pred             ceEEEEcCCCCc--------------ChhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHH
Confidence            566666654211              1111111 1122233456678999999999999999999999999999998887


Q ss_pred             hhhhhhccccCCCCCEEEEeCChhhHHHHHHHHH-hhhcCcEEEEeCCCHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHH
Q 014951          160 DQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETH-CIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGIS  238 (415)
Q Consensus       160 ~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~-~l~~G~~vv~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  238 (415)
                      ...+     .+.++|++++.+|++|.+++...+. .+..|+.+++...++..+++.|+++++|++.++|+++..+++...
T Consensus       193 ~~~~-----~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~  267 (509)
T 3ivr_A          193 VDAW-----RLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA  267 (509)
T ss_dssp             HHHT-----TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCC
T ss_pred             HHhh-----CCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhccc
Confidence            7766     7889999999999999999987665 455555555555599999999999999999999999999875210


Q ss_pred             HhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhc-CCc
Q 014951          239 NKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAP  317 (415)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~-~~~  317 (415)
                                                             ..++        +++|.++++|++   ++.+.+.+.+ +++
T Consensus       268 ---------------------------------------~~~l--------~~lr~~~~~g~~---~~~~~~~~~~~~~~  297 (509)
T 3ivr_A          268 ---------------------------------------PAQL--------ASLRAVTGLDTP---ETIERFEATCPNAT  297 (509)
T ss_dssp             ---------------------------------------GGGG--------TTCCEEEEECCH---HHHHHHHHHCTTCE
T ss_pred             ---------------------------------------ccch--------hhhheecccCCh---HHHHHHHHhcCCCe
Confidence                                                   0001        389999999998   7777887777 899


Q ss_pred             eEEeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhhhhhh
Q 014951          318 LTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI  397 (415)
Q Consensus       318 ~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~~~~  397 (415)
                      +++.||+||++.+++......  ...++|+|+++++++|+| +++.  +++.|+.|||+|+||+++.|||++|+.|.++|
T Consensus       298 ~~~~YG~TE~~~~~~~~~~~~--~~~~~G~p~~~~~~~i~d-~~~~--~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f  372 (509)
T 3ivr_A          298 FWATFGQSETSGLSTFAPYRD--RPKSAGRPLFWRTVAVVD-AEDR--PLPPGEVGEIVLRGPTVFKGYWNNAAATQHAF  372 (509)
T ss_dssp             EEEEEEEGGGTEEEEEEEGGG--STTSCCEECTTCEEEEEC-TTSC--BCCTTCCEEEEEESTTSCCEETTCHHHHHHHT
T ss_pred             EEcccCccccccccccCcccc--CCCcccccCCCcEEEEEC-CCCC--CCCCCCceEEEEecCCccccccCCHHHhHHHh
Confidence            999999999998776554332  225599999999999999 7765  45567999999999999999999999999999


Q ss_pred             cCCceecCceEEEcCCCC
Q 014951          398 VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       398 ~~g~~~TGDlg~~d~~G~  415 (415)
                      .+|||+|||+|++|+||+
T Consensus       373 ~~g~~~TGDl~~~~~dG~  390 (509)
T 3ivr_A          373 RNGWHHTGDMGRFDADGY  390 (509)
T ss_dssp             GGGSEEEEEEEEECTTSC
T ss_pred             hcCCcccccEEEECCCce
Confidence            999999999999999995

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=100.00  E-value=2.1e-54  Score=428.48  Aligned_cols=350  Identities=17%  Similarity=0.231  Sum_probs=283.8

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChh-----hhhhcCc
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP-----SILSCLP   75 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~-----~~~~~~~   75 (415)
                      |+++|+++||+|+++++|++++++++|||+++|++++|+++..+.+++.++++++++++++++.....     .......
T Consensus        67 L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~  146 (617)
T 3rg2_A           67 LRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVT  146 (617)
T ss_dssp             HHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHH
T ss_pred             HHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhh
Confidence            45789999999999999999999999999999999999999999999999999999999999987541     1111111


Q ss_pred             cCCCCccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHH
Q 014951           76 RCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAE  155 (415)
Q Consensus        76 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~  155 (415)
                       .....+.+...+....             ..+.+............+..++++++|+|||||||.||||+++|+++.+.
T Consensus       147 -~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~  212 (617)
T 3rg2_A          147 -EHSSIRVVQLLNDSGE-------------HNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYS  212 (617)
T ss_dssp             -HSTTCCEEEEETCCST-------------TBHHHHHHSCCSSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHH
T ss_pred             -cCCccceeeecccccc-------------cchhhhhcccccccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHH
Confidence             1133444444433211             22334443333333345567899999999999999999999999999999


Q ss_pred             hhhhhhhhhhccccCCCCCEEEEeCChhhHHHHHH--HHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHH
Q 014951          156 VLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII--ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDR  232 (415)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~--~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~  232 (415)
                      +......+     .+.++|++++++|++|.+++..  ++.+++.|+++++.+. ++..+++.++++++|++.++|+++..
T Consensus       213 ~~~~~~~~-----~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~  287 (617)
T 3rg2_A          213 VRRSVEIC-----QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSL  287 (617)
T ss_dssp             HHHHHHHH-----TCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHH
T ss_pred             HHHHHHhc-----CCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHH
Confidence            98877766     7889999999999999998874  7788999999999876 99999999999999999999999999


Q ss_pred             HHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHH
Q 014951          233 IYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRV  312 (415)
Q Consensus       233 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~  312 (415)
                      +++.........                                           ..+++|.+++||+++++++.+++.+
T Consensus       288 l~~~~~~~~~~~-------------------------------------------~l~~lr~i~~gGe~l~~~~~~~~~~  324 (617)
T 3rg2_A          288 WLQALIEGESRA-------------------------------------------QLASLKLLQVGGARLSATLAARIPA  324 (617)
T ss_dssp             HHHHHHTTCCTT-------------------------------------------TTTTCCEEEEESSCCCHHHHHHHHH
T ss_pred             HHHhhhcccccc-------------------------------------------cCCCccEEEEcCCcCCHHHHHHHHH
Confidence            876433211000                                           0138999999999999999999999


Q ss_pred             hcCCceEEeeccCCCCceeeeecCCcccccCcccccc-cCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCch
Q 014951          313 TSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPM-TTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPD  391 (415)
Q Consensus       313 ~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~-~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~  391 (415)
                      .++.++++.||+||++..++...........++|+|+ ++++++|+| +++.  +++.|+.|||+|+||++++||+++|+
T Consensus       325 ~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~--~~p~G~~GEl~i~G~~v~~GY~~~p~  401 (617)
T 3rg2_A          325 EIGCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVAD-AEGN--PLPQGEVGRLMTRGPYTFRGYYKSPQ  401 (617)
T ss_dssp             HTCSEEEEEEEETTEEEEECCTTSCHHHHHHCCCEESCTTCEEEEEC-TTSC--BCCTTCCEEEEEECSSSCSCCTTCHH
T ss_pred             HhCCcEEEEeccCcceeecccCCCcccccccCCCccCCCCceEEEEC-CCCC--CCCCCCceEEEecCccccchhcCChh
Confidence            8999999999999987554433222223346889997 788999999 7775  45566999999999999999999999


Q ss_pred             hhhhhh-cCCceecCceEEEcCCCC
Q 014951          392 LTEEVI-VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       392 ~~~~~~-~~g~~~TGDlg~~d~~G~  415 (415)
                      .|.++| .+|||+|||+|++|+||+
T Consensus       402 ~t~~~f~~~~~yrTGDl~~~~~dG~  426 (617)
T 3rg2_A          402 HNASAFDANGFYCSGDLISIDPEGY  426 (617)
T ss_dssp             HHHHHBCTTSCEEEEEEEEECTTSC
T ss_pred             hhhhccCCCCceecCceEEEcCCce
Confidence            999999 799999999999999985

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=6.5e-55  Score=434.01  Aligned_cols=360  Identities=15%  Similarity=0.212  Sum_probs=283.2

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChh---------hhh
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP---------SIL   71 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~   71 (415)
                      |+++|+++||+|+|+++|++++++++|||+++|++++|+++.++++++.+++++++++++|+++....         .+.
T Consensus       124 L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~  203 (652)
T 1pg4_A          124 LLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVD  203 (652)
T ss_dssp             HHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHH
T ss_pred             HHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHH
Confidence            45679999999999999999999999999999999999999999999999999999999999876421         122


Q ss_pred             hcCccCC-CCccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecH
Q 014951           72 SCLPRCC-LYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQ  150 (415)
Q Consensus        72 ~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~  150 (415)
                      ....... ..++.++.++.......    ........|++++.............++|+++|+|||||||.||||+++|+
T Consensus       204 ~~~~~~~~~~~~~vi~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~  279 (652)
T 1pg4_A          204 DALKNPNVTSVEHVIVLKRTGSDID----WQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTG  279 (652)
T ss_dssp             HHHTSTTCCSCCEEEEECSSCCCCC----CCBTTEEEHHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESH
T ss_pred             HHHhcCCcCCCCEEEEEeCCCCccc----ccCCCceeHHHHHhhcCCCCCccccCCCCCEEEEeccCCCCCCceEEECch
Confidence            2221110 13456666654211000    000113456777654322233344568999999999999999999999999


Q ss_pred             HHHHHhh-hhhhhhhhccccCCCCCEEEEeCChhhHHHHH-HHHHhhhcCcEEEEeCC-----CHHHHHHHHHhhCCeEE
Q 014951          151 AIVAEVL-SVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQI-IETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMF  223 (415)
Q Consensus       151 ~l~~~~~-~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~vv~~~~-----~~~~~~~~i~~~~~t~~  223 (415)
                      +++.... .....+     .+.++|++++.+|++|..+.. .++.+++.|+++++.+.     ++..+++.|+++++|++
T Consensus       280 ~~~~~~~~~~~~~~-----~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~  354 (652)
T 1pg4_A          280 GYLVYAATTFKYVF-----DYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNIL  354 (652)
T ss_dssp             HHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEE
T ss_pred             HHHHHHHHHHHHhc-----CCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEE
Confidence            9887664 333334     678999999999999999985 47889999999999863     78999999999999999


Q ss_pred             EeCcHHHHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCC
Q 014951          224 SGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLP  303 (415)
Q Consensus       224 ~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~  303 (415)
                      +++|++++.+++.....                                   ....+        .++||.+++|||+++
T Consensus       355 ~~~P~~~~~l~~~~~~~-----------------------------------~~~~~--------l~sLr~i~~gGe~l~  391 (652)
T 1pg4_A          355 YTAPTAIRALMAEGDKA-----------------------------------IEGTD--------RSSLRILGSVGEPIN  391 (652)
T ss_dssp             EECHHHHHHHHTTGGGG-----------------------------------TTTCC--------CTTCCEEEEESSCCC
T ss_pred             EeCHHHHHHHHhcCccc-----------------------------------cccCC--------cCceEEEEEecCCCC
Confidence            99999999886521100                                   00001        148999999999999


Q ss_pred             HHHHHHHHHhcC---CceEEeeccCCCCceeeeecCC-cccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEec
Q 014951          304 IHVEEFLRVTSG---APLTQGYGLTESCSGCFTSLAD-VFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRG  379 (415)
Q Consensus       304 ~~~~~~~~~~~~---~~~~~~yG~tE~~~~~~~~~~~-~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~  379 (415)
                      +++.+++.+.++   +++++.||+||++..++...+. .....+++|+|++|++++|+| +++..+  +.|+.|||+|+|
T Consensus       392 ~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v--~~g~~GEl~i~g  468 (652)
T 1pg4_A          392 PEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQ--EGATEGNLVITD  468 (652)
T ss_dssp             HHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBC--CSSEEEEEEECS
T ss_pred             HHHHHHHHHHhCCCCCcEEccccCcccccceecCCCCCcCccCCccccCcCCCeEEEEC-CCCCCc--CCCceEEEEEcc
Confidence            999999999888   8999999999998766654432 233458999999999999999 777544  456899999999


Q ss_pred             --CCccccccCCchhhhhhh---cCCceecCceEEEcCCCC
Q 014951          380 --NTLFSGYYKRPDLTEEVI---VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       380 --~~~~~gY~~~~~~~~~~~---~~g~~~TGDlg~~d~~G~  415 (415)
                        |+++.|||++++.+.+.|   .+|||+|||+|++|+||+
T Consensus       469 ~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~  509 (652)
T 1pg4_A          469 SWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGY  509 (652)
T ss_dssp             CCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSC
T ss_pred             CCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCc
Confidence              799999999999988876   389999999999999996

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=100.00  E-value=3.3e-55  Score=422.88  Aligned_cols=342  Identities=17%  Similarity=0.201  Sum_probs=264.5

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCC---CCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYD---TLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRC   77 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~---~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~   77 (415)
                      |+++|+ +||+|+|+++|++++++++|||+++|++++||++   .++.+++.+++++++++++|++.+....+.......
T Consensus        75 L~~~g~-~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~  153 (480)
T 3t5a_A           75 LSRCGS-TGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARR  153 (480)
T ss_dssp             HTTSSC-TTCEEEEECCSSHHHHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC--
T ss_pred             HHhcCC-CCCEEEEEcCCcHHHHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhcc
Confidence            467886 9999999999999999999999999999999999   788999999999999999999998877766544322


Q ss_pred             CC-CccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHh
Q 014951           78 CL-YLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEV  156 (415)
Q Consensus        78 ~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~  156 (415)
                      .. ....++.++...                     .............++++++|+|||||||.||||++||+++..++
T Consensus       154 ~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~  212 (480)
T 3t5a_A          154 PGESPPSIIEVDLLD---------------------LDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNF  212 (480)
T ss_dssp             ----CCEEEEGGGSC---------------------TTCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHH
T ss_pred             ccccccceeEecccc---------------------cccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHH
Confidence            10 111233322211                     01111223345578899999999999999999999999999988


Q ss_pred             hhhhhhhhhccccCCC------CCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC-----CHHHHHHHHHhhCCeEEE
Q 014951          157 LSVDQMFVVTGKVCSE------EDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFS  224 (415)
Q Consensus       157 ~~~~~~~~~~~~~~~~------~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~-----~~~~~~~~i~~~~~t~~~  224 (415)
                      ......+     .+..      .|++++++|++|.+++.. ++.+++.|+++++.+.     ++..+++.|+++++| +.
T Consensus       213 ~~~~~~~-----~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~  286 (480)
T 3t5a_A          213 EQLMSGY-----FADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FS  286 (480)
T ss_dssp             HHHHHHH-----CTTTTTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EE
T ss_pred             HHHHHHh-----ccccccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-Ee
Confidence            8776655     3444      899999999999999875 7788999999999863     899999999999999 88


Q ss_pred             eCcHHHHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCH
Q 014951          225 GVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPI  304 (415)
Q Consensus       225 ~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~  304 (415)
                      ++|+++..++......                                 ......+        .++||.+++||+++++
T Consensus       287 ~~p~~~~~l~~~~~~~---------------------------------~~~~~~~--------l~~lr~i~~gG~~l~~  325 (480)
T 3t5a_A          287 AAPNFAFELAARRTTD---------------------------------DDMAGRD--------LGNILTILSGSERVQA  325 (480)
T ss_dssp             EECHHHHHHHHHHCCT---------------------------------GGGTTCC--------CTTCCEEEECCTTCCH
T ss_pred             eChHHHHHHHHhhcCc---------------------------------ccccccc--------hhhhheeeecCCcCCH
Confidence            9999988876522100                                 0000111        1489999999999999


Q ss_pred             HHHHHHHHhcC------CceEEeeccCCCCceeeeecCCc------------------------ccccCcccccccCeEE
Q 014951          305 HVEEFLRVTSG------APLTQGYGLTESCSGCFTSLADV------------------------FNMIGTVGVPMTTVEA  354 (415)
Q Consensus       305 ~~~~~~~~~~~------~~~~~~yG~tE~~~~~~~~~~~~------------------------~~~~~~~G~~~~g~~~  354 (415)
                      ++.+++.+.++      ..+++.||+||++..++......                        ....+++|+|++ +++
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~  404 (480)
T 3t5a_A          326 ATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIV  404 (480)
T ss_dssp             HHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEE
T ss_pred             HHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEE
Confidence            99999998874      47999999999998877654332                        123468999999 999


Q ss_pred             EEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhhhhhh------------cCCceecCceEEEcCCCC
Q 014951          355 RLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI------------VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       355 ~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~~~~------------~~g~~~TGDlg~~d~~G~  415 (415)
                      +|+| ++++ .+++.|+.|||+|+||+++.|||++|++|.++|            .+|||+|||+|++| ||+
T Consensus       405 ~ivd-~~~g-~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~  474 (480)
T 3t5a_A          405 RIVD-SDTC-IECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGK  474 (480)
T ss_dssp             EEEE-TTTT-EECCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTE
T ss_pred             EEEc-CCCC-cCCCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCE
Confidence            9999 5532 445667999999999999999999999999998            36799999999997 885

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=100.00  E-value=9.3e-55  Score=427.34  Aligned_cols=329  Identities=17%  Similarity=0.209  Sum_probs=267.3

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |+++|+++||+|+|+++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++.+....+.        .
T Consensus       117 L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~--------~  188 (570)
T 4gr5_A          117 LVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLT--------G  188 (570)
T ss_dssp             HHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSC--------S
T ss_pred             HHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhccc--------C
Confidence            45789999999999999999999999999999999999999999999999999999999999986543321        1


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD  160 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~  160 (415)
                      ...+...+..                     ..............++|+++|+|||||||.||||++||+++.+..... 
T Consensus       189 ~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~-  246 (570)
T 4gr5_A          189 TTTLYVEDEA---------------------ASDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQ-  246 (570)
T ss_dssp             SEEEECCC----------------------------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSSC-
T ss_pred             Ccceeeeccc---------------------cccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHhh-
Confidence            1111111110                     000011122334578999999999999999999999999998776552 


Q ss_pred             hhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC---CHHHHHHHHHhhCCeEEEeCcHHHHHHHHHH
Q 014951          161 QMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG---DVRYLMEDIQELKPTMFSGVPRVYDRIYTGI  237 (415)
Q Consensus       161 ~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~  237 (415)
                      ..+     .+.++|++++++|++|..+...++.+++.|+++++.+.   ++..+++.|+++++|++.++|+++..+++..
T Consensus       247 ~~~-----~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~  321 (570)
T 4gr5_A          247 DYA-----GFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEV  321 (570)
T ss_dssp             CSS-----CCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC
T ss_pred             hhc-----CCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhc
Confidence            222     67889999999999998777778889999999999863   8999999999999999999999999886521


Q ss_pred             HHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhc-CC
Q 014951          238 SNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GA  316 (415)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~-~~  316 (415)
                      ..                                        +        .++||.+++||+++++++.+.+.+.+ ++
T Consensus       322 ~~----------------------------------------~--------~~~lr~~~~gG~~l~~~~~~~~~~~~~~~  353 (570)
T 4gr5_A          322 PE----------------------------------------A--------FEGVRYAITGGEPASVPHVAKARRDHPAL  353 (570)
T ss_dssp             GG----------------------------------------G--------GTTCSEEEEESSCCCHHHHHHHHHHCTTC
T ss_pred             hh----------------------------------------h--------CCCceEEEEecccCCHHHHHHHHHhCCCc
Confidence            10                                        0        14899999999999999888887776 78


Q ss_pred             ceEEeeccCCCCceeeeecCCcc---cccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhh
Q 014951          317 PLTQGYGLTESCSGCFTSLADVF---NMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLT  393 (415)
Q Consensus       317 ~~~~~yG~tE~~~~~~~~~~~~~---~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~  393 (415)
                      ++++.||+||+++.++.......   ....++|+|+++++++|+| +++..  ++.|+.|||+|+||+++.|||++|+.|
T Consensus       354 ~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~~~~--~~~G~~GEl~v~g~~v~~GY~~~~~~t  430 (570)
T 4gr5_A          354 RLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLD-DDLKP--AANGALGELYVAGAGLAHGYVSRPALT  430 (570)
T ss_dssp             EEEEEECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEEC-TTSCB--CCTTCEEEEEEEETTCCCEETTCHHHH
T ss_pred             EEEEeechhhheeeeeeeeecccccCCCccccceeeCCCEEEEEC-CCCCC--CCCCCcEEEEEeecccchhcCCCchhh
Confidence            99999999999887665433222   2246799999999999999 77654  556799999999999999999999999


Q ss_pred             hhhh-cC--------CceecCceEEEcCCCC
Q 014951          394 EEVI-VD--------GWFHTGDIGEWQPMEL  415 (415)
Q Consensus       394 ~~~~-~~--------g~~~TGDlg~~d~~G~  415 (415)
                      .++| .+        |||+|||+|++|+||+
T Consensus       431 ~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~  461 (570)
T 4gr5_A          431 AERFVADPFAGPGGERMYRTGDLARRRADGV  461 (570)
T ss_dssp             HHHEEECTTCCSSCCEEEEEEEEEEECTTSC
T ss_pred             hcccccCCCCCCCCCEEEeCCCeEEECCCCe
Confidence            9998 33        7999999999999996

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=100.00  E-value=2.5e-54  Score=429.96  Aligned_cols=359  Identities=19%  Similarity=0.242  Sum_probs=281.6

Q ss_pred             cCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChh---------hhhhc
Q 014951            3 SRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP---------SILSC   73 (415)
Q Consensus         3 ~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~~~   73 (415)
                      ++||++||+|+|+++|++|+++++|||+++|++++|+++.++++++.+++++++++++|+++....         .+...
T Consensus       133 ~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~  212 (663)
T 1ry2_A          133 SMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDA  212 (663)
T ss_dssp             TSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHH
T ss_pred             hcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHH
Confidence            789999999999999999999999999999999999999999999999999999999999876532         22222


Q ss_pred             CccCCCCccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHH
Q 014951           74 LPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV  153 (415)
Q Consensus        74 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~  153 (415)
                      ... .+.++.+++++.......   .........|.++........+..+..++|+++|+|||||||.||||+++|.+++
T Consensus       213 ~~~-~~~~~~vi~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~  288 (663)
T 1ry2_A          213 LRE-TPGVRHVLVYRKTNNPSV---AFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYL  288 (663)
T ss_dssp             TTS-CTTCCEEEEECSSCCSSC---CCCSSSEEEHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHH
T ss_pred             HHh-CCCCceEEEEecCCCCcc---ccCCCccccHHHHHhhcCCCCCccccCCCCceEEEeccCCCCCCceEEEchhHHH
Confidence            222 234566776654211000   0001123456666654322233345678999999999999999999999999988


Q ss_pred             HHhhh-hhhhhhhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC-----CHHHHHHHHHhhCCeEEEeC
Q 014951          154 AEVLS-VDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGV  226 (415)
Q Consensus       154 ~~~~~-~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~-----~~~~~~~~i~~~~~t~~~~~  226 (415)
                      ..... ....+     .+.++|++++..|++|..+..+ ++.+++.|+++++.+.     ++..+++.|+++++|+++++
T Consensus       289 ~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~  363 (663)
T 1ry2_A          289 LGALLTMRYTF-----DTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVA  363 (663)
T ss_dssp             HHHHHHHHHHS-----CCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEEC
T ss_pred             HHHHHHHHHhc-----CCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEec
Confidence            76643 33334     6789999999999999999854 7789999999999863     78999999999999999999


Q ss_pred             cHHHHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHH
Q 014951          227 PRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV  306 (415)
Q Consensus       227 P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~  306 (415)
                      |++++.+.+....                                   .....++        ++||.+++|||++++++
T Consensus       364 Ps~~~~l~~~~~~-----------------------------------~~~~~~l--------~sLr~i~~gGe~l~~~~  400 (663)
T 1ry2_A          364 PTALRLLKRAGDS-----------------------------------YIENHSL--------KSLRCLGSVGEPIAAEV  400 (663)
T ss_dssp             HHHHHHHTTSCTT-----------------------------------SSSSCCC--------TTCCEEEECSSCCCHHH
T ss_pred             HHHHHHHHhcCcc-----------------------------------ccccCCc--------CceEEEEEEcCCCCHHH
Confidence            9999887531000                                   0000011        48999999999999999


Q ss_pred             HHHHHHhcC---CceEEeeccCCCCceeeeecC--CcccccCcccccccCeEEEEeecC-CCCCCCCCCCCCCeEEEec-
Q 014951          307 EEFLRVTSG---APLTQGYGLTESCSGCFTSLA--DVFNMIGTVGVPMTTVEARLESVP-EMGYDALSSVPRGEICLRG-  379 (415)
Q Consensus       307 ~~~~~~~~~---~~~~~~yG~tE~~~~~~~~~~--~~~~~~~~~G~~~~g~~~~i~~~~-~~~~~~~~~~~~Gel~v~~-  379 (415)
                      .+++.+.++   +++++.||+||++..++...+  ....+.+++|+|++|++++|+| + ++..++. .|+.|||+++| 
T Consensus       401 ~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~~g~~v~~-~g~~Gel~i~g~  478 (663)
T 1ry2_A          401 WEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLD-PNTGEELNT-SHAEGVLAVKAA  478 (663)
T ss_dssp             HHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEEC-SSSTTCEEC-SSCEEEEEESSC
T ss_pred             HHHHHHHhCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEc-CCCCCcCCC-CCcceEEEEecC
Confidence            999999888   899999999999876665543  2233458999999999999999 6 6654432 26899999999 


Q ss_pred             -CCccccccCCchhhhhhh---cCCceecCceEEEcCCCC
Q 014951          380 -NTLFSGYYKRPDLTEEVI---VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       380 -~~~~~gY~~~~~~~~~~~---~~g~~~TGDlg~~d~~G~  415 (415)
                       |+++.|||++++.+.+.|   .+|||+|||+|++|+||+
T Consensus       479 ~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~  518 (663)
T 1ry2_A          479 WPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGY  518 (663)
T ss_dssp             CTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCC
T ss_pred             CCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCC
Confidence             589999999999998887   279999999999999996

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=100.00  E-value=4.3e-54  Score=424.77  Aligned_cols=328  Identities=17%  Similarity=0.139  Sum_probs=265.9

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |+++|+++||+|+|+++|++++++++|||+++|++++||+|.++.+++.+++++++++++|++.........        
T Consensus        69 L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~--------  140 (620)
T 4dg8_A           69 LLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPANG--------  140 (620)
T ss_dssp             HHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCTT--------
T ss_pred             HHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccccC--------
Confidence            456799999999999999999999999999999999999999999999999999999999976653321110        


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD  160 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~  160 (415)
                      ...+ .+.                     ... ........+...++++++|+|||||||.||||+++|+++.+.+.. .
T Consensus       141 ~~~~-~~~---------------------~~~-~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~  196 (620)
T 4dg8_A          141 LPCV-PVR---------------------HLP-AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-Q  196 (620)
T ss_dssp             SCEE-EGG---------------------GCC-CCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-C
T ss_pred             Ccee-eec---------------------cCC-cCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-H
Confidence            0010 000                     000 001112233456899999999999999999999999999887765 3


Q ss_pred             hhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC---CHHHHHHHHHhhCCeEEEeCcHHHHHHHHHH
Q 014951          161 QMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG---DVRYLMEDIQELKPTMFSGVPRVYDRIYTGI  237 (415)
Q Consensus       161 ~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~  237 (415)
                      ..+     .+.++|++++++|++|..++..++.+++.|+++++.+.   ++..+++.|+++++|+++++|+++..+++..
T Consensus       197 ~~~-----~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~  271 (620)
T 4dg8_A          197 SFL-----AFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD  271 (620)
T ss_dssp             GGG-----TTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC
T ss_pred             Hhh-----CCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC
Confidence            333     67899999999999999999888999999999998742   8999999999999999999999999876410


Q ss_pred             HHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhc-CC
Q 014951          238 SNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GA  316 (415)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~-~~  316 (415)
                      .                                        .+        .++||.+++|||+++++..+.+.+.+ ++
T Consensus       272 ~----------------------------------------~~--------l~~lr~v~~gGe~l~~~~~~~~~~~~~~~  303 (620)
T 4dg8_A          272 P----------------------------------------DC--------LGGLRQLLTGGDILSVPHVRRALLRHPRL  303 (620)
T ss_dssp             G----------------------------------------GG--------GTTCSEEEEESSCCCHHHHHHHHHHCTTC
T ss_pred             h----------------------------------------hh--------CCCccEEEEEeCcCCHHHHHHHHHhCCCe
Confidence            0                                        00        14899999999999988777766554 78


Q ss_pred             ceEEeeccCCCCceeeeecCCc---ccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhh
Q 014951          317 PLTQGYGLTESCSGCFTSLADV---FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLT  393 (415)
Q Consensus       317 ~~~~~yG~tE~~~~~~~~~~~~---~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~  393 (415)
                      +++|.||+||++..+++.....   .....++|+|+++++++|+| +++.. .++.|+.|||+|+|+++++|||++|+.|
T Consensus       304 ~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~-~~~~g~~GEl~i~G~~v~~GY~~~p~~t  381 (620)
T 4dg8_A          304 HLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLD-EHGQE-IAEPDRAGEIVAFGAGLAQGYRNDAART  381 (620)
T ss_dssp             EEEEEECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEEC-TTSCB-CCSSSCCEEEEEEETTCCSEETTCHHHH
T ss_pred             EEEeeEchhhhhhheEEEeccccccCCCCCCceecccCcEEEEEC-ccCCC-CCCCCCceEEEEeccccccccCCChhhh
Confidence            9999999999998766543322   22347899999999999999 66653 3456799999999999999999999999


Q ss_pred             hhhhcC--------CceecCceEEEcCCCC
Q 014951          394 EEVIVD--------GWFHTGDIGEWQPMEL  415 (415)
Q Consensus       394 ~~~~~~--------g~~~TGDlg~~d~~G~  415 (415)
                      .++|.+        +||+|||+|++|+||+
T Consensus       382 ~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~  411 (620)
T 4dg8_A          382 RASFVELPYRGRLLRAYRTGDRARYDEQGR  411 (620)
T ss_dssp             HHHEEEEEETTEEEEEEEEEEEEEECTTSC
T ss_pred             hhhhccCCCCCCCceEEeCCCEEEECCCCe
Confidence            999943        7999999999999995

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=2e-53  Score=411.58  Aligned_cols=331  Identities=25%  Similarity=0.365  Sum_probs=265.3

Q ss_pred             CCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccE
Q 014951            4 RGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKT   83 (415)
Q Consensus         4 ~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~   83 (415)
                      .+++.||+|+++++|+++++++++||+++|++++||+|.++.+++.+++++++++++|++.+....  ...    .....
T Consensus        63 ~~L~~~~~V~i~~~~~~~~~~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~--~~~----~~~~~  136 (505)
T 3nyq_A           63 GRIGGAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELP--PAL----GALER  136 (505)
T ss_dssp             TTCC---CEEEECCSSHHHHHHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCC--GGG----TTSEE
T ss_pred             hhccCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccccc--hhh----ccccc
Confidence            466779999999999999999999999999999999999999999999999999999998752110  000    11111


Q ss_pred             EEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhhhhh
Q 014951           84 IVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF  163 (415)
Q Consensus        84 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~  163 (415)
                       +.++..                        .....+.....++|+++|+|||||||.||+|+++|+++...+......+
T Consensus       137 -~~~~~~------------------------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~  191 (505)
T 3nyq_A          137 -VDVDVR------------------------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW  191 (505)
T ss_dssp             -EECCTT------------------------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH
T ss_pred             -cccccc------------------------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh
Confidence             111110                        0111223445689999999999999999999999999999998877766


Q ss_pred             hhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHHHhh
Q 014951          164 VVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKI  241 (415)
Q Consensus       164 ~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~  241 (415)
                           .+.+.|++++.+|++|..++.. ++.++..|+++++.+. ++..+++.+ ++++|+++++|+++..+++.+....
T Consensus       192 -----~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~  265 (505)
T 3nyq_A          192 -----QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADP  265 (505)
T ss_dssp             -----TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCH
T ss_pred             -----CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCc
Confidence                 7789999999999999999875 7888999999998876 899999999 8899999999999998876322110


Q ss_pred             hcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCCceEEe
Q 014951          242 SSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQG  321 (415)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~~~~  321 (415)
                                                        ....++        +++|.+++||+++++++.+++.+.++.++++.
T Consensus       266 ----------------------------------~~~~~l--------~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~  303 (505)
T 3nyq_A          266 ----------------------------------ELAKAL--------AGARLLVSGSAALPVHDHERIAAATGRRVIER  303 (505)
T ss_dssp             ----------------------------------HHHHHH--------HHCSEEEECSSCCCHHHHHHHHHHHSCCCEEE
T ss_pred             ----------------------------------hhhccc--------ccceEEEECCCCCCHHHHHHHHHhcCCeeecc
Confidence                                              001111        27999999999999999999999899999999


Q ss_pred             eccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCC-CCCCCCeEEEecCCccccccCCchhhhhhh-cC
Q 014951          322 YGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDAL-SSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VD  399 (415)
Q Consensus       322 yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~-~~~~~Gel~v~~~~~~~gY~~~~~~~~~~~-~~  399 (415)
                      ||+||++..++...... ...+++|+|+++++++|+| +++..++. +.|+.|||+|+|++++.|||++|+.|.++| .+
T Consensus       304 YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~  381 (505)
T 3nyq_A          304 YGMTETLMNTSVRADGE-PRAGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTED  381 (505)
T ss_dssp             EEETTTEEEEECCTTSC-CCTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTT
T ss_pred             cchhhcccccccCCCCC-CCCCCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCC
Confidence            99999987666544333 3448999999999999999 77766554 446899999999999999999999999999 69


Q ss_pred             CceecCceEEEcCCCC
Q 014951          400 GWFHTGDIGEWQPMEL  415 (415)
Q Consensus       400 g~~~TGDlg~~d~~G~  415 (415)
                      |||+|||+|++|+||+
T Consensus       382 g~y~TGDl~~~~~dG~  397 (505)
T 3nyq_A          382 GFFRTGDMAVRDPDGY  397 (505)
T ss_dssp             SCEEEEEEEEECTTSC
T ss_pred             CCCccCCeEEECCCcc
Confidence            9999999999999985

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=100.00  E-value=8e-54  Score=419.38  Aligned_cols=329  Identities=19%  Similarity=0.274  Sum_probs=264.1

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |+++|+++||+|+++++|++++++++|||+++|++++||++.++.+++.+++++++++++|++.+....+.....     
T Consensus        81 L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~-----  155 (563)
T 1amu_A           81 FIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQF-----  155 (563)
T ss_dssp             HHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCC-----
T ss_pred             HHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccc-----
Confidence            456899999999999999999999999999999999999999999999999999999999999876554332211     


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD  160 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~  160 (415)
                      ...+..++...                +    ..........+..++|+++|+|||||||.||||++||+++.+.+....
T Consensus       156 ~~~~~~~~~~~----------------~----~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~  215 (563)
T 1amu_A          156 NGQVEIFEEDT----------------I----KIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFE  215 (563)
T ss_dssp             CSEEEECCCST----------------T----TTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHH
T ss_pred             cCceeeecchh----------------h----ccccCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHH
Confidence            11233322110                0    000111112345678999999999999999999999999998887766


Q ss_pred             hhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC----CHHHHHHHHHhhCCeEEEeCcHHHHHHHHH
Q 014951          161 QMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTG  236 (415)
Q Consensus       161 ~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~  236 (415)
                      ..+     .+.++|++++++|++|..++..++.+++.|+++++.+.    ++..+++.|+++++|++.++|+++..+.. 
T Consensus       216 ~~~-----~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~-  289 (563)
T 1amu_A          216 NSL-----NVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDP-  289 (563)
T ss_dssp             HTS-----CCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCT-
T ss_pred             Hhc-----CCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHh-
Confidence            555     77899999999999999998878889999999998764    88999999999999999999999876421 


Q ss_pred             HHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCC
Q 014951          237 ISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGA  316 (415)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~  316 (415)
                                                          .              ...++|.+++||+++++++.+.+.+  ..
T Consensus       290 ------------------------------------~--------------~~~~lr~~~~gG~~l~~~~~~~~~~--~~  317 (563)
T 1amu_A          290 ------------------------------------E--------------RILSIQTLITAGSATSPSLVNKWKE--KV  317 (563)
T ss_dssp             ------------------------------------T--------------TCCSCSEEEEESSCCCHHHHHHHTT--TS
T ss_pred             ------------------------------------c--------------ccccccEEEEEEecCCHHHHHHHHh--CC
Confidence                                                0              0148999999999999999999876  47


Q ss_pred             ceEEeeccCCCCceeeeecCCc--ccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhhh
Q 014951          317 PLTQGYGLTESCSGCFTSLADV--FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTE  394 (415)
Q Consensus       317 ~~~~~yG~tE~~~~~~~~~~~~--~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~  394 (415)
                      ++++.||+||++..++......  .....++|+|+++++++|+| +++..  ++.|+.|||+|+||+++.|||++|+.|.
T Consensus       318 ~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~~--~~~g~~GEl~v~g~~v~~GY~~~pe~t~  394 (563)
T 1amu_A          318 TYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-ENLQL--KSVGEAGELCIGGEGLARGYWKRPELTS  394 (563)
T ss_dssp             EEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEEC-TTSCB--CCTTCEEEEEEEETTCCCEETTCHHHHH
T ss_pred             eEEEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEEC-CCcCC--CCCCCcEEEEEechhhChhhCCCchhhh
Confidence            8999999999987665543322  12347899999999999999 77654  4567999999999999999999999999


Q ss_pred             hhhc-------CCceecCceEEEcCCCC
Q 014951          395 EVIV-------DGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       395 ~~~~-------~g~~~TGDlg~~d~~G~  415 (415)
                      ++|.       +|||+|||+|++|+||+
T Consensus       395 ~~f~~~~~~~g~~w~~TGDlg~~d~dG~  422 (563)
T 1amu_A          395 QKFVDNPFVPGEKLYKTGDQARWLSDGN  422 (563)
T ss_dssp             HHEEECSSSTTSEEEEEEEEEEECTTSC
T ss_pred             hhcccCCCCCCCEEEecCCEEEEcCCCe
Confidence            9983       35999999999999996

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=100.00  E-value=2.4e-53  Score=441.69  Aligned_cols=358  Identities=27%  Similarity=0.380  Sum_probs=284.4

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |+++|+++||+|+|+++|++++++++|||+++|++++||+|.++++++.+++++++++++|++.+..+.+.......   
T Consensus       105 L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~---  181 (979)
T 3tsy_A          105 FHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD---  181 (979)
T ss_dssp             HHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS---
T ss_pred             HHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC---
Confidence            45789999999999999999999999999999999999999999999999999999999999988766555433211   


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCC---CCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTL---DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVL  157 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~  157 (415)
                      ...++.++.....      ........+.++......   ..+.....++|+++|+|||||||.||+|+++|+++...+.
T Consensus       182 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~  255 (979)
T 3tsy_A          182 GVVIVCIDDNESV------PIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVA  255 (979)
T ss_dssp             CCEEEECCCCTTS------CCCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHH
T ss_pred             CceEEEeCCcccc------cCCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHH
Confidence            1234444432110      001123444444432211   2233456789999999999999999999999999998876


Q ss_pred             hhhhhhhhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHHHHH
Q 014951          158 SVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYT  235 (415)
Q Consensus       158 ~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~  235 (415)
                      ...... .....+.+.|++++++|++|.+++.. ++.++..|+++++.+. ++..+++.|+++++|++.++|+++..+++
T Consensus       256 ~~~~~~-~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~  334 (979)
T 3tsy_A          256 QQVDGE-NPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAK  334 (979)
T ss_dssp             HHHCSS-SCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHH
T ss_pred             HHHHhh-cccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHh
Confidence            543211 01125778999999999999999975 6788999999999876 99999999999999999999999998865


Q ss_pred             HHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhc-
Q 014951          236 GISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-  314 (415)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~-  314 (415)
                      ...                                     ....++        ++||.+++||+++++++.+++.+.+ 
T Consensus       335 ~~~-------------------------------------~~~~~l--------~~lr~~~~gg~~l~~~~~~~~~~~~~  369 (979)
T 3tsy_A          335 SSE-------------------------------------TEKYDL--------SSIRVVKSGAAPLGKELEDAVNAKFP  369 (979)
T ss_dssp             CGG-------------------------------------GGTSCC--------TTCCEEEESSCCCCSSHHHHHHHHCT
T ss_pred             Ccc-------------------------------------ccCCCc--------cceEEEEEcCCCCCHHHHHHHHHHCC
Confidence            211                                     011111        4899999999999999999999888 


Q ss_pred             CCceEEeeccCCCCceeeeecC----CcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCc
Q 014951          315 GAPLTQGYGLTESCSGCFTSLA----DVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRP  390 (415)
Q Consensus       315 ~~~~~~~yG~tE~~~~~~~~~~----~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~  390 (415)
                      ++++++.||+||++.+++....    ......+++|+|+++++++|+| ++.+ .+++.|+.|||+|+||+++.|||++|
T Consensus       370 ~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~~~-~~~~~g~~GEl~i~g~~v~~GY~~~p  447 (979)
T 3tsy_A          370 NAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVD-PDTG-DSLSRNQPGEICIRGHQIMKGYLNNP  447 (979)
T ss_dssp             TCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEEC-TTSC-CBCCTTCCEEEEEESTTSCSEETTCH
T ss_pred             CCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEe-CCCC-CCCCCCCccEEEEECCCccccccCCh
Confidence            8899999999999987665421    1223458999999999999999 4432 45567799999999999999999999


Q ss_pred             hhhhhhh-cCCceecCceEEEcCCCC
Q 014951          391 DLTEEVI-VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       391 ~~~~~~~-~~g~~~TGDlg~~d~~G~  415 (415)
                      +.|.+.| .+|||+|||+|++|+||+
T Consensus       448 ~~t~~~f~~~g~~~TGDl~~~~~dG~  473 (979)
T 3tsy_A          448 AATAETIDKDGWLHTGDIGLIDDDDE  473 (979)
T ss_dssp             HHHHHHBCTTSCEEEEEEEEECTTSC
T ss_pred             hhhhhhccCCCcEEcCCEEEEcCCce
Confidence            9999999 799999999999999985

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=100.00  E-value=1e-53  Score=416.13  Aligned_cols=337  Identities=18%  Similarity=0.186  Sum_probs=267.7

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |++.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|++.+....+..        
T Consensus        46 L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~--------  117 (521)
T 3l8c_A           46 IDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEG--------  117 (521)
T ss_dssp             HHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCTT--------
T ss_pred             HHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCcccccccc--------
Confidence            457899999999999999999999999999999999999999999999999999999999998865432211        


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD  160 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~  160 (415)
                      . .++.+                  ..+.................++|+++|+|||||||.||+|++||+++........
T Consensus       118 ~-~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~  178 (521)
T 3l8c_A          118 I-SLVSL------------------SEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMI  178 (521)
T ss_dssp             S-EEEEH------------------HHHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHH
T ss_pred             C-cccch------------------hhhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHh
Confidence            0 11111                  0111111111112233456789999999999999999999999999998776654


Q ss_pred             hhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC----CHHHHHHHHHhhCCeEEEeCcHHHHHHHHH
Q 014951          161 QMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTG  236 (415)
Q Consensus       161 ~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~  236 (415)
                      ...   .......+++++..|++|..+....+.++..|+++++.+.    ++..+++.++++++|++.++|+++..++..
T Consensus       179 ~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~  255 (521)
T 3l8c_A          179 EDA---AFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLS  255 (521)
T ss_dssp             HCT---TTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTS
T ss_pred             hcc---ccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhh
Confidence            431   1266789999999999999988888888999999998764    889999999999999999999999876531


Q ss_pred             HHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhc-C
Q 014951          237 ISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-G  315 (415)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~-~  315 (415)
                      ..                                     ....+        .+++|.+++||+++++++.+.+.+.+ +
T Consensus       256 ~~-------------------------------------~~~~~--------~~~lr~~~~gG~~l~~~~~~~~~~~~~~  290 (521)
T 3l8c_A          256 DD-------------------------------------FCQAK--------MPALTHFYFDGEELTVSTARKLFERFPS  290 (521)
T ss_dssp             TT-------------------------------------CSTTT--------CTTCCEEEECSSCCCHHHHHHHHHHCTT
T ss_pred             hc-------------------------------------ccccc--------CccceEEEEecccCCHHHHHHHHHHCCC
Confidence            00                                     00000        14899999999999999999998888 8


Q ss_pred             CceEEeeccCCCCceeeeecCCcc----cccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCch
Q 014951          316 APLTQGYGLTESCSGCFTSLADVF----NMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPD  391 (415)
Q Consensus       316 ~~~~~~yG~tE~~~~~~~~~~~~~----~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~  391 (415)
                      .++++.||+||++..++.......    ...+++|+|+++++++|+| +++..  ++.|+.|||+|+||+++.|||++|+
T Consensus       291 ~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~--~~~g~~GEl~v~g~~v~~GY~~~~~  367 (521)
T 3l8c_A          291 AKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIID-EDGKE--LSSGEQGEIIVTGPAVSKGYLNNPE  367 (521)
T ss_dssp             CEEEEEECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEEC-TTSCB--CCTTCCEEEEEESTTSCSCBTTCHH
T ss_pred             ceEEeCcCccHHhhhhceeecccccccCCCccccccccCCCEEEEEC-CCcCC--CCCCCceEEEecccccChhhcCCch
Confidence            899999999999887654432211    1246899999999999999 77654  5567999999999999999999999


Q ss_pred             hhhhhh----cCCceecCceEEEcCCCC
Q 014951          392 LTEEVI----VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       392 ~~~~~~----~~g~~~TGDlg~~d~~G~  415 (415)
                      .|.++|    .+|||+|||+|++|+||+
T Consensus       368 ~t~~~f~~~~~~~~~~TGDlg~~d~dG~  395 (521)
T 3l8c_A          368 KTAEAFFTFKGQPAYHTGDIGSLTEDNI  395 (521)
T ss_dssp             HHHHHEEEETTEEEEEEEEEEEECSSSC
T ss_pred             HhhccCcCCCCceeeeCCCEEEEeCCCe
Confidence            999998    357999999999999995

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=100.00  E-value=1e-53  Score=415.13  Aligned_cols=334  Identities=19%  Similarity=0.203  Sum_probs=267.2

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |++.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|++........        .
T Consensus        43 L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~--------~  114 (512)
T 3fce_A           43 ISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTDL--------P  114 (512)
T ss_dssp             HHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSCC--------S
T ss_pred             HHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCccccccc--------c
Confidence            35679999999999999999999999999999999999999999999999999999999999864321100        0


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcC--CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLG--TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS  158 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~  158 (415)
                       ..++..                  ..+.++....  ....+.....++++++|+|||||||.||+|++||+++...+..
T Consensus       115 -~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~  175 (512)
T 3fce_A          115 -VRIVSE------------------DNLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKW  175 (512)
T ss_dssp             -SEEEET------------------HHHHHHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHH
T ss_pred             -cceech------------------hhhhhhcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHH
Confidence             011110                  0111221111  1122233557899999999999999999999999999999888


Q ss_pred             hhhhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC----CHHHHHHHHHhhCCeEEEeCcHHHHHHH
Q 014951          159 VDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIY  234 (415)
Q Consensus       159 ~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~  234 (415)
                      ....+     .+.++|++++++|++|.+++..++.+++.|+++++.+.    ++..+++.++++++|++.++|+++..++
T Consensus       176 ~~~~~-----~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~  250 (512)
T 3fce_A          176 AVEDF-----NLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCL  250 (512)
T ss_dssp             HHHHT-----TCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHT
T ss_pred             HHHhc-----CCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHH
Confidence            76666     77899999999999999998888899999999999874    8999999999999999999999998874


Q ss_pred             HHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhc
Q 014951          235 TGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS  314 (415)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~  314 (415)
                      ...                                     .....+        .+++|.+++||+++++++.+++.+.+
T Consensus       251 ~~~-------------------------------------~~~~~~--------~~~lr~~~~~G~~l~~~~~~~~~~~~  285 (512)
T 3fce_A          251 MEA-------------------------------------SFSESM--------LPNMKTFLFCGEVLPNEVARKLIERF  285 (512)
T ss_dssp             TST-------------------------------------TCSTTT--------STTCCEEEECSSCCCHHHHHHHHHHC
T ss_pred             hhc-------------------------------------cccchh--------CccccEEEEecCcCCHHHHHHHHHHC
Confidence            310                                     000001        14899999999999999999999888


Q ss_pred             -CCceEEeeccCCCCceeeeecCCcc----cccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCC
Q 014951          315 -GAPLTQGYGLTESCSGCFTSLADVF----NMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKR  389 (415)
Q Consensus       315 -~~~~~~~yG~tE~~~~~~~~~~~~~----~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~  389 (415)
                       +.++++.||+||++..++.......    ....++|+|.++++++|+| +++..  ++.|+.|||+|+||+++.|||++
T Consensus       286 ~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~--~~~g~~GEl~v~g~~v~~GY~~~  362 (512)
T 3fce_A          286 PKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMK-EDGTI--APDGEKGEIVIVGPSVSVGYLGS  362 (512)
T ss_dssp             TTCEEEEEECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEEC-SSSCB--CCTTSCEEEEEESTTSCSCBTTC
T ss_pred             CCCEEEeCcccChhhhheeeEEeccccccccCCCccccccCCcEEEEEC-CCCCC--CCCCCeEEEEEeccccChhhcCC
Confidence             7899999999999887665443321    1347899999999999999 77654  45679999999999999999999


Q ss_pred             chhhhhhhc----CCceecCceEEEcCCCC
Q 014951          390 PDLTEEVIV----DGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       390 ~~~~~~~~~----~g~~~TGDlg~~d~~G~  415 (415)
                      |+.|.++|.    +|||+|||+|++ +||+
T Consensus       363 ~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~  391 (512)
T 3fce_A          363 PELTEKAFTMIDGERAYKTGDAGYV-ENGL  391 (512)
T ss_dssp             HHHHHHHEEEETTEEEEEEEEEEEE-ETTE
T ss_pred             chhhhhccccCCCCEEEeCCceEEe-cCCE
Confidence            999999983    569999999999 6774

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=100.00  E-value=8.3e-53  Score=408.49  Aligned_cols=330  Identities=18%  Similarity=0.225  Sum_probs=269.9

Q ss_pred             CCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccE
Q 014951            4 RGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKT   83 (415)
Q Consensus         4 ~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~   83 (415)
                      .|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++........   ..       
T Consensus        47 ~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~---~~-------  116 (511)
T 3e7w_A           47 ISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAV---GQ-------  116 (511)
T ss_dssp             SCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCC---CC-------
T ss_pred             cCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchhc---cc-------
Confidence            48889999999999999999999999999999999999999999999999999999999765322110   00       


Q ss_pred             EEEecCCCchhhHHhhhcCceeecHHHHHhcC-CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhhhh
Q 014951           84 IVSFANVSSSQKKEAEELGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQM  162 (415)
Q Consensus        84 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~  162 (415)
                                        ......++++.... ..........++++++|+|||||||.||+|++||+++...+......
T Consensus       117 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~  178 (511)
T 3e7w_A          117 ------------------QIQTVSAEELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICAD  178 (511)
T ss_dssp             ------------------SSCEEEHHHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHH
T ss_pred             ------------------ccceecHhhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHh
Confidence                              01123344444332 11222234567899999999999999999999999999998887666


Q ss_pred             hhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC----CHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHH
Q 014951          163 FVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGIS  238 (415)
Q Consensus       163 ~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  238 (415)
                      +     .+..+|++++++|++|.+++..++.+++.|+++++.+.    ++..+++.++++++|++.++|+++..+++.. 
T Consensus       179 ~-----~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-  252 (511)
T 3e7w_A          179 F-----PVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDP-  252 (511)
T ss_dssp             S-----TTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTST-
T ss_pred             c-----CCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhcc-
Confidence            6     77899999999999999998888899999999999864    8999999999999999999999998875410 


Q ss_pred             HhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhc-CCc
Q 014951          239 NKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAP  317 (415)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~-~~~  317 (415)
                                                          .....        ..+++|.+++||+++++++.+++.+.+ +.+
T Consensus       253 ------------------------------------~~~~~--------~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~  288 (511)
T 3e7w_A          253 ------------------------------------GFSQD--------LLPHADTFMFCGEVLPVSVAKALLERFPKAK  288 (511)
T ss_dssp             ------------------------------------TCSTT--------TCTTCCEEEECSSCCCHHHHHHHHHHCTTCE
T ss_pred             ------------------------------------ccccc--------cCCcccEEEEecCCCCHHHHHHHHHHCCCcE
Confidence                                                00000        114899999999999999999999988 789


Q ss_pred             eEEeeccCCCCceeeeecCCc----ccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhh
Q 014951          318 LTQGYGLTESCSGCFTSLADV----FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLT  393 (415)
Q Consensus       318 ~~~~yG~tE~~~~~~~~~~~~----~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~  393 (415)
                      +++.||+||++..++......    .....++|+|+++++++|+| +++.  +++.|+.|||+|+||+++.|||++|+.|
T Consensus       289 i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t  365 (511)
T 3e7w_A          289 IFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMD-EEGQ--PLPEGEKGEIVIAGPSVSRGYLGEPELT  365 (511)
T ss_dssp             EEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEEC-TTSC--BCCTTCCEEEEEESTTSCCCBTTCHHHH
T ss_pred             EEeCcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEEC-CCCC--CCCCCCceEEEEecCccChhhCCCcccc
Confidence            999999999987765443221    12236799999999999999 7765  4556799999999999999999999999


Q ss_pred             hhhh--cCC--ceecCceEEEcCCCC
Q 014951          394 EEVI--VDG--WFHTGDIGEWQPMEL  415 (415)
Q Consensus       394 ~~~~--~~g--~~~TGDlg~~d~~G~  415 (415)
                      .++|  .+|  ||+|||+|+++ ||+
T Consensus       366 ~~~f~~~~g~~~~~TGDlg~~~-dG~  390 (511)
T 3e7w_A          366 EKAFFSHEGQWAYRTGDAGFIQ-DGQ  390 (511)
T ss_dssp             HHHEEESSSSEEEEEEEEEEEE-TTE
T ss_pred             hhhhcCCCCCEEEeCCCeEEcc-CCe
Confidence            9998  344  89999999994 774

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=100.00  E-value=6e-53  Score=417.17  Aligned_cols=344  Identities=19%  Similarity=0.253  Sum_probs=268.9

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCC---CHHHHHHHHHhcCceEEEEcCCChhhhhhcCccC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL---GANAVEFIINHAEVSIAFVQENKIPSILSCLPRC   77 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~---~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~   77 (415)
                      |+++|+++||+|+++++|++++++++|||+++|++++||+|..   +.+++.++++.++++++|++.+....+.......
T Consensus        57 L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~  136 (590)
T 3kxw_A           57 LQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNT  136 (590)
T ss_dssp             HHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----
T ss_pred             HHHcCCCCCCEEEEEcCCchhHHHHHHHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhh
Confidence            4578999999999999999999999999999999999999988   4578999999999999999887655543322111


Q ss_pred             CCCccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhh
Q 014951           78 CLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVL  157 (415)
Q Consensus        78 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~  157 (415)
                      .+....+...                   ..+++..............++|+++|+|||||||.||||++||+++...+.
T Consensus       137 ~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~  197 (590)
T 3kxw_A          137 NPKFLKIPAI-------------------ALESIELNRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLN  197 (590)
T ss_dssp             CCEETTEEEE-------------------EGGGCCGGGGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHH
T ss_pred             ccccccccee-------------------echhccccccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHH
Confidence            1111111111                   111111111112233456789999999999999999999999999999998


Q ss_pred             hhhhhhhhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC-----CHHHHHHHHHhhCCeEEEeCcHHHH
Q 014951          158 SVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYD  231 (415)
Q Consensus       158 ~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~  231 (415)
                      .....+     .+.++|++++++|++|.+++.. ++.+++.|+++++.+.     ++..+++.|+++++|++.++|.++.
T Consensus       198 ~~~~~~-----~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~  272 (590)
T 3kxw_A          198 KIFTSF-----HMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYD  272 (590)
T ss_dssp             HHHHHT-----TCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHH
T ss_pred             HHHHhh-----CCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHH
Confidence            877766     7889999999999999999986 7888999999999864     7899999999999999999999998


Q ss_pred             HHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHH
Q 014951          232 RIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLR  311 (415)
Q Consensus       232 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~  311 (415)
                      .+++.+....                                  ....++        +++|.+++||+++++++.+++.
T Consensus       273 ~l~~~~~~~~----------------------------------~~~~~l--------~~lr~~~~gg~~l~~~~~~~~~  310 (590)
T 3kxw_A          273 YCVKRIREEK----------------------------------KEGLDL--------SSWVTAFNGAEPVREETMEHFY  310 (590)
T ss_dssp             HHHHHCCGGG----------------------------------GTTCCC--------TTCCEEEECSSCCCHHHHHHHH
T ss_pred             HHHHHhhhhh----------------------------------ccCCCc--------hhhHHHhhCCCCCCHHHHHHHH
Confidence            8866322111                                  000111        4899999999999999999999


Q ss_pred             HhcC------CceEEeeccCCCCceeeeecCC--------------------------cccccCcccccccCeEEEEeec
Q 014951          312 VTSG------APLTQGYGLTESCSGCFTSLAD--------------------------VFNMIGTVGVPMTTVEARLESV  359 (415)
Q Consensus       312 ~~~~------~~~~~~yG~tE~~~~~~~~~~~--------------------------~~~~~~~~G~~~~g~~~~i~~~  359 (415)
                      +.++      .++++.||+||++..++.....                          .....+++|+|+++  ++|+| 
T Consensus       311 ~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d-  387 (590)
T 3kxw_A          311 QAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIID-  387 (590)
T ss_dssp             HHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEEC-
T ss_pred             HHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEc-
Confidence            8873      4799999999999877654321                          11234788999998  78888 


Q ss_pred             CCCCCCCCCCCCCCeEEEecCCccccccCCchhhhhhhcC-------C--ceecCceEEEcCCCC
Q 014951          360 PEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVD-------G--WFHTGDIGEWQPMEL  415 (415)
Q Consensus       360 ~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~~~~~~-------g--~~~TGDlg~~d~~G~  415 (415)
                      ++++ .+++.|+.|||+|+||+++.|||++|+.|.++|.+       |  ||+|||+|++| ||+
T Consensus       388 ~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~  450 (590)
T 3kxw_A          388 PDTL-IPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENE  450 (590)
T ss_dssp             TTTC-CBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTE
T ss_pred             CCCC-cCCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCE
Confidence            5532 55667799999999999999999999999999943       5  99999999999 774

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=100.00  E-value=2.8e-52  Score=409.59  Aligned_cols=341  Identities=18%  Similarity=0.178  Sum_probs=268.8

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |++.|+ +||+|+++++|++++++++|||+++|++++||++.++.+++.+++++++++++|++++....+..      ..
T Consensus        72 L~~~g~-~gd~V~i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~------~~  144 (562)
T 3ite_A           72 IIHASL-HGRAIAVSLDRSLIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVEL------PP  144 (562)
T ss_dssp             HHHTTC-SSCEEEEECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCCC------CT
T ss_pred             HHhcCC-CCCEEEEEeCCCHHHHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccccc------Cc
Confidence            356788 79999999999999999999999999999999999999999999999999999998765433210      11


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD  160 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~  160 (415)
                      ...++....                ..+.+...............++++++|+|||||||.||+|++||+++......+.
T Consensus       145 ~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~  208 (562)
T 3ite_A          145 ETKVLDTKN----------------QSFIENLSTQDTSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWG  208 (562)
T ss_dssp             TCEEEETTC----------------HHHHHHHHHSCCSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHH
T ss_pred             cceeecccc----------------hhhhhhcccccccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHH
Confidence            112222111                1122222222222223445678899999999999999999999999998877654


Q ss_pred             hhhh---hccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC--CHHHHHHHHHhhCCeEEEeCcHHHHHHHH
Q 014951          161 QMFV---VTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYT  235 (415)
Q Consensus       161 ~~~~---~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~  235 (415)
                      ..+.   .....+...+++++..|++|..++..++.++..|+++++.+.  .+..+++.++++++|++.++|++++.+..
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~  288 (562)
T 3ite_A          209 KLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGL  288 (562)
T ss_dssp             HHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTC
T ss_pred             hhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhccc
Confidence            4321   112356788999999999999888888889999999988765  46788999999999999999998876421


Q ss_pred             HHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcC
Q 014951          236 GISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG  315 (415)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~  315 (415)
                                                               ...+        .+++|.+++||+++++++.+++.+.++
T Consensus       289 -----------------------------------------~~~~--------~~~lr~~~~gG~~l~~~~~~~~~~~~~  319 (562)
T 3ite_A          289 -----------------------------------------VPED--------APHLVYLGVGGEKMTPRTQQIWSSSDR  319 (562)
T ss_dssp             -----------------------------------------CGGG--------STTCCEEEEESSCCCHHHHHHHTTCSS
T ss_pred             -----------------------------------------Cccc--------cCceEEEEEecCCCCHHHHHHHhhCCC
Confidence                                                     0001        148999999999999999999998889


Q ss_pred             CceEEeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhhhh
Q 014951          316 APLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEE  395 (415)
Q Consensus       316 ~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~~  395 (415)
                      +++++.||+||++..++..........+++|+|+++++++|+| ++++ .+++.|+.|||+|+||+++.|||++|+.+..
T Consensus       320 ~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~  397 (562)
T 3ite_A          320 VALVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDSVAHVLA-PGSN-EHVKKGMAGELVIEGSLVANGYLNRPDAKGF  397 (562)
T ss_dssp             CEEEEEECCGGGCSCSEEEECCTTSCTTEEEEECTTCEEEEEC-TTSS-CBCCTTSCEEEEEESTTSCCEESSCTTCCSE
T ss_pred             cEEEEeeccchheeeeeeeeecCCCCCccccccCCCCeEEEEe-CCCC-CCCCCCCceEEEEeccccchhhCCCcccccc
Confidence            9999999999998877665554444558899999999999999 5443 4566779999999999999999999999887


Q ss_pred             hhcCC--ceecCceEEEcCCCC
Q 014951          396 VIVDG--WFHTGDIGEWQPMEL  415 (415)
Q Consensus       396 ~~~~g--~~~TGDlg~~d~~G~  415 (415)
                      .+.+|  ||+|||+|++|+||+
T Consensus       398 ~~~~g~~w~~TGDlg~~d~dG~  419 (562)
T 3ite_A          398 CDINGRKMYRTGDIVRMDADSS  419 (562)
T ss_dssp             EEETTEEEEEEEEEEEECTTSC
T ss_pred             ccCCCCEEEecCCEEEEcCCCe
Confidence            77666  999999999999996

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=1.8e-52  Score=405.56  Aligned_cols=340  Identities=22%  Similarity=0.314  Sum_probs=263.2

Q ss_pred             CCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEe
Q 014951            8 PGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSF   87 (415)
Q Consensus         8 ~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~   87 (415)
                      +||+|+++++|+++++++++||+++|++++|+++.++.+++.+++++++++++|++.+...........  .....+...
T Consensus        47 ~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~--~~~~~~~~~  124 (501)
T 3ipl_A           47 QQSRVGLYIDNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSL--DDIEFAGRD  124 (501)
T ss_dssp             CCSEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEET--TC-------
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCccCCHHHHHHHHHhcCCCEEEEcccccccccccccc--ccceeeeee
Confidence            899999999999999999999999999999999999999999999999999999998765443221110  111111100


Q ss_pred             cCCCchhhHHhhhcCceee-cHHHHHhcC-CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhhhhhhh
Q 014951           88 ANVSSSQKKEAEELGVSCF-SWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVV  165 (415)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~  165 (415)
                      .......   ......... ..+...... ..........++|+++|+|||||||.||+|++||+++...+......+  
T Consensus       125 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~--  199 (501)
T 3ipl_A          125 ITTNGLL---DNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL--  199 (501)
T ss_dssp             ----------------------------CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT--
T ss_pred             ccccccc---ccccccccccchhhccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh--
Confidence            0000000   000000000 001111111 011123345789999999999999999999999999999988876666  


Q ss_pred             ccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHHHhhhcC
Q 014951          166 TGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSG  244 (415)
Q Consensus       166 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~  244 (415)
                         .+.++|++++++|++|.+++..++.+++.|+++++.+. ++..+++.|+++++|++.++|+++..+++....     
T Consensus       200 ---~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-----  271 (501)
T 3ipl_A          200 ---GFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLH-----  271 (501)
T ss_dssp             ---CCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC-----
T ss_pred             ---CCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC-----
Confidence               77899999999999999999888889999999999876 999999999999999999999999988652100     


Q ss_pred             ChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCCceEEeecc
Q 014951          245 GALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGL  324 (415)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~~~~yG~  324 (415)
                                                      .           ..++|.+++||+++++++.+++.+ +++++++.||+
T Consensus       272 --------------------------------~-----------~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~  307 (501)
T 3ipl_A          272 --------------------------------E-----------PYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGM  307 (501)
T ss_dssp             --------------------------------S-----------CTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEE
T ss_pred             --------------------------------C-----------cCcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccc
Confidence                                            0           026999999999999999999987 69999999999


Q ss_pred             CCCCceeeeecCCc-ccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhhhhhhcCCcee
Q 014951          325 TESCSGCFTSLADV-FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFH  403 (415)
Q Consensus       325 tE~~~~~~~~~~~~-~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~~~~~~g~~~  403 (415)
                      ||++..+....... ....+++|+|+++++++|+| ++       .++.|||+|+|+.++.|||++++.+.. |.+|||+
T Consensus       308 TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~-------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~~~g~~~  378 (501)
T 3ipl_A          308 TETCSQFLTATPEMLHARPDTVGMPSANVDVKIKN-PN-------KEGHGELMIKGANVMNGYLYPTDLTGT-FENGYFN  378 (501)
T ss_dssp             GGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEES-CC-------SSCCEEEEEESTTSCSCCSBSTTCCCS-EETTEEE
T ss_pred             cccccceeecCccccccCCCCCCCCCCCcEEEEec-CC-------CCCccEEEEeccchhhhhCcChhhcch-hcCCcee
Confidence            99987655443322 23458999999999999999 44       236899999999999999999999887 8899999


Q ss_pred             cCceEEEcCCCC
Q 014951          404 TGDIGEWQPMEL  415 (415)
Q Consensus       404 TGDlg~~d~~G~  415 (415)
                      |||+|++|+||+
T Consensus       379 TGDl~~~~~~G~  390 (501)
T 3ipl_A          379 TGDIAEIDHEGY  390 (501)
T ss_dssp             EEEEEEECTTSC
T ss_pred             cCCEEEEcCCCe
Confidence            999999999985

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=3.1e-50  Score=428.33  Aligned_cols=333  Identities=18%  Similarity=0.258  Sum_probs=270.2

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |++.|+++||+|+|+++|++++++++|||+++|++++||+|.++.+++.+++++++++++|++.+....+...     +.
T Consensus       506 L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~-----~~  580 (1304)
T 2vsq_A          506 LQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAEL-----PY  580 (1304)
T ss_dssp             HHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTC-----CC
T ss_pred             HHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhcc-----CC
Confidence            4578999999999999999999999999999999999999999999999999999999999998755432211     11


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD  160 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~  160 (415)
                      ....+.++...                  .. .. ..........+++++||+|||||||.||||+++|+++.+. ....
T Consensus       581 ~~~~~~~~~~~------------------~~-~~-~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~  639 (1304)
T 2vsq_A          581 TGTTLFIDDQT------------------RF-EE-QASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHV  639 (1304)
T ss_dssp             CSEEEESSCGG------------------GG-GS-CSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSC
T ss_pred             CCcEEEecccc------------------cc-cc-ccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHH
Confidence            12333332210                  00 00 1111223457899999999999999999999999999876 3333


Q ss_pred             hhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC----CHHHHHHHHHhhCCeEEEeCcHHHHHHHHH
Q 014951          161 QMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTG  236 (415)
Q Consensus       161 ~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~  236 (415)
                      ..+     .+.++|+++.+.|++|..+...++.++..|+++++.+.    ++..+++.|+++++|+++++|++++.+.+.
T Consensus       640 ~~~-----~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~  714 (1304)
T 2vsq_A          640 DYM-----AFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDA  714 (1304)
T ss_dssp             CSS-----CCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHH
T ss_pred             Hhc-----CCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhh
Confidence            333     67899999999999999988888999999999999864    899999999999999999999999987541


Q ss_pred             HHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcC-
Q 014951          237 ISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG-  315 (415)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~-  315 (415)
                      .                                        ...+        +++|.+++|||++++++.+.+.+.++ 
T Consensus       715 ~----------------------------------------~~~~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~  746 (1304)
T 2vsq_A          715 G----------------------------------------EDWM--------KGLRCILFGGERASVPHVRKALRIMGP  746 (1304)
T ss_dssp             C----------------------------------------SHHH--------HTCSEEEEESSCCCHHHHHHHHHHHCT
T ss_pred             c----------------------------------------hhcC--------CCccEEEEecCCCCHHHHHHHHHhCCC
Confidence            0                                        0001        27999999999999999888887775 


Q ss_pred             CceEEeeccCCCCceeeeecCCc---ccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchh
Q 014951          316 APLTQGYGLTESCSGCFTSLADV---FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDL  392 (415)
Q Consensus       316 ~~~~~~yG~tE~~~~~~~~~~~~---~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~  392 (415)
                      .+++|.||+||++..++......   .....++|+|+++++++|+| +++..  ++.|+.|||+|+|+++++||+|+|++
T Consensus       747 ~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~--~p~G~~GEl~i~G~~v~~GY~~~p~~  823 (1304)
T 2vsq_A          747 GKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILN-EQSQL--QPFGAVGELCISGMGVSKGYVNRADL  823 (1304)
T ss_dssp             TCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEEC-TTSCB--CCTTCCEEEEEEETTCCCCBTTCHHH
T ss_pred             CEEEEeEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEEC-CCcCC--CCCCCceEEEEeccccCccccCCccc
Confidence            68999999999998776554322   22346899999999999999 77654  45669999999999999999999999


Q ss_pred             hhhhhc-------CCceecCceEEEcCCCC
Q 014951          393 TEEVIV-------DGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       393 ~~~~~~-------~g~~~TGDlg~~d~~G~  415 (415)
                      |.++|.       ++||||||+|++++||+
T Consensus       824 T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~  853 (1304)
T 2vsq_A          824 TKEKFIENPFKPGETLYRTGDLARWLPDGT  853 (1304)
T ss_dssp             HHHHEEECTTSTTCEEEEEEEEEEECTTSC
T ss_pred             chhhhccCCCCCCCeeEecCCeEEEcCCCe
Confidence            999982       35999999999999995

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=100.00  E-value=4.7e-36  Score=276.69  Aligned_cols=208  Identities=17%  Similarity=0.184  Sum_probs=175.3

Q ss_pred             CCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhhhhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeC
Q 014951          126 KTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWR  205 (415)
Q Consensus       126 ~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~  205 (415)
                      .+++++|+|||||||.||+|++||+++.+++......+     .+.++|++++++|++|++++..++.++..|+++++.+
T Consensus        36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~  110 (358)
T 4gs5_A           36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-----SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTE  110 (358)
T ss_dssp             HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEEC
T ss_pred             CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecC
Confidence            47899999999999999999999999999998877776     7889999999999999999988888999999998886


Q ss_pred             CCHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHH
Q 014951          206 GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIR  285 (415)
Q Consensus       206 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (415)
                      . ....++.|+++++|++.++|+++..+++...                                      ...++    
T Consensus       111 ~-~~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~--------------------------------------~~~~l----  147 (358)
T 4gs5_A          111 P-TANPLAGLDHADFDFVAMVPMQLQSILENSA--------------------------------------TSGQV----  147 (358)
T ss_dssp             C-CSCTTTTCSSCCCSEEEECHHHHHHHHHCTT--------------------------------------TGGGG----
T ss_pred             c-cccHHHHHHHhCCeEEEcChHHHHHhhcccc--------------------------------------ccccC----
Confidence            4 2234677899999999999999998865110                                      00011    


Q ss_pred             HHhCCceeEEEEecCCCCHHHHHHHHHhcCCceEEeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCC
Q 014951          286 EAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYD  365 (415)
Q Consensus       286 ~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~  365 (415)
                          ++||.+++||+++++++.+++++ ++.++++.||+||++..+.....+.... +++|.+.||+++.+.+       
T Consensus       148 ----~~lr~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~~~~~~~~~~~~~~-g~~~~~~pgv~~~~~~-------  214 (358)
T 4gs5_A          148 ----DRLGKVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETVSHVALKALNGPEA-SELYVFLPGIQYGVDE-------  214 (358)
T ss_dssp             ----GGGCSEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGSSEEEEEECSSTTC-CSCEEECTTCEEEECT-------
T ss_pred             ----CcceEEEEcccCCCchheecccc-cCceEEeccccccccceeeccccccccc-ceeeccCCCeEEEecC-------
Confidence                38999999999999999999986 6999999999999998887776655444 8899999999988744       


Q ss_pred             CCCCCCCCeEEEecCCccccccCCchhhhhhhcCCceecCceEEEcCCCC
Q 014951          366 ALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       366 ~~~~~~~Gel~v~~~~~~~gY~~~~~~~~~~~~~g~~~TGDlg~~d~~G~  415 (415)
                            .|||+++|+..               .+|||+|||+|++|+||+
T Consensus       215 ------~Gel~~~g~~~---------------~~g~~~TGDlg~~d~~g~  243 (358)
T 4gs5_A          215 ------RGCLHISGAVT---------------NGQTVQTNDLVEIHGNAF  243 (358)
T ss_dssp             ------TSEEEEESGGG---------------TTCCEEEEEEEEECSSEE
T ss_pred             ------cCceEEecccc---------------cCcceecCCccccccCce
Confidence                  59999988632               378999999999999874

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=100.00  E-value=4e-34  Score=271.87  Aligned_cols=230  Identities=13%  Similarity=0.092  Sum_probs=181.7

Q ss_pred             CCCC-CCeEEEEecCCCCCCCceEEeecHHHHHHhhhhhhhhhhccccCCCCCEEEEeCChhhHHHHH-HHHHhhhcCcE
Q 014951          123 PKKK-TNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQI-IETHCIHKGCS  200 (415)
Q Consensus       123 ~~~~-~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~  200 (415)
                      ...+ +++++++|||||||.||+|++||+++......+...+.  ...+.++|++++..|+.|..+.. ..+.++..|++
T Consensus        81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~  158 (436)
T 3qov_A           81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLY--MVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCL  158 (436)
T ss_dssp             CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHH--HTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCE
T ss_pred             cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHH--HcCCCCCCEEEECcccccchhHHHHHHHHHHcCCE
Confidence            4455 89999999999999999999999999877665543221  12678899999999997665555 57778999999


Q ss_pred             EEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHH
Q 014951          201 IGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSL  279 (415)
Q Consensus       201 vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (415)
                      +++.+. ++..+++.|+++++|+++++|+++..+++..........                                  
T Consensus       159 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~----------------------------------  204 (436)
T 3qov_A          159 TVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPR----------------------------------  204 (436)
T ss_dssp             EECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTT----------------------------------
T ss_pred             EEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcc----------------------------------
Confidence            998865 999999999999999999999999998775433211100                                  


Q ss_pred             HHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCCceEEeeccCCCCceeeeecCCcccccCcccccccCeEEEEeec
Q 014951          280 VFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESV  359 (415)
Q Consensus       280 ~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~  359 (415)
                               .+++|.+++||+++++++.+++.+.+++++++.||+||+++.++......  . ...+.+.+++.++|+|.
T Consensus       205 ---------~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~--~-~g~~~~~~~~~v~i~d~  272 (436)
T 3qov_A          205 ---------ETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQE--Q-NGMHFWEDCYLVEIIDP  272 (436)
T ss_dssp             ---------SSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECTT--C-SSEEECTTTEEEEEECT
T ss_pred             ---------cCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecCC--C-CeeEEccCceEEEEEEC
Confidence                     13899999999999999999999999999999999999965533222211  1 33667778999999993


Q ss_pred             CCCCCCCCCCCCCCeEEEecCCccccccCCchhhhhhhcCCceecCceEEEcCCC
Q 014951          360 PEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPME  414 (415)
Q Consensus       360 ~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~~~~~~g~~~TGDlg~~d~~G  414 (415)
                      +++  .+++.|+.|||+|+|.            +...|.++||+|||+|++|+||
T Consensus       273 ~~g--~~~~~g~~Gel~v~~~------------~~~~~~~~~y~TGDl~~~~~~g  313 (436)
T 3qov_A          273 ETG--EPVPEGEIGELVLTTL------------DREMMPLIRYRTRDLTRILPGK  313 (436)
T ss_dssp             TTC--SBCSTTCCEEEEEEES------------SCCSSCCCSEEEEEEECEECSC
T ss_pred             CCC--CCCCCCCceEEEEecc------------CcCCceEEEEEcCCEEEEcCCC
Confidence            344  4556779999999983            3445678999999999999997

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=100.00  E-value=1.3e-33  Score=268.39  Aligned_cols=247  Identities=17%  Similarity=0.137  Sum_probs=187.4

Q ss_pred             eecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhhhhhhhccccCCCCCEEEEeCCh-h
Q 014951          105 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL-A  183 (415)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~-~  183 (415)
                      +.+.+++....  +.......++++++++|||||||.||+|++||+++..........+.  ...+.++|++++..|+ +
T Consensus        70 ~~~~~~l~~~~--~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~  145 (437)
T 2y27_A           70 FTTKGDLRDSY--PFGMFAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIR--AAGARRGDKVHVSYGYGL  145 (437)
T ss_dssp             CBCHHHHHHTT--TTTTCSSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHH--HTTCCTTCEEEECSCCSS
T ss_pred             CCCHHHHHhcC--CCccccCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHH--HcCCCCCCEEEEcccccc
Confidence            34455554432  11233456789999999999999999999999999877655433211  1267889999999998 6


Q ss_pred             hHHHHHHHHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhc
Q 014951          184 HIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGN  262 (415)
Q Consensus       184 ~~~~~~~~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (415)
                      |..++...+.++..|+++++.+. ++..+++.|++++||+++++|+++..+++........                   
T Consensus       146 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~-------------------  206 (437)
T 2y27_A          146 FTGGLGAHYGAERAGLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLD-------------------  206 (437)
T ss_dssp             SHHHHHHHHHHHHTTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCC-------------------
T ss_pred             cccchHHHHHHHHcCCEEEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCC-------------------
Confidence            77777777888999999998776 9999999999999999999999999987644321100                   


Q ss_pred             cccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCCceEEeeccCCCCce-eeeecCCcccc
Q 014951          263 MKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSG-CFTSLADVFNM  341 (415)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~-~~~~~~~~~~~  341 (415)
                                   .           ..+++|.+++||+++++++.+++++.+++++++.||+||+++. +.......  .
T Consensus       207 -------------~-----------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~--~  260 (437)
T 2y27_A          207 -------------P-----------VQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECVET--K  260 (437)
T ss_dssp             -------------G-----------GGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCTTT--C
T ss_pred             -------------c-----------ccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecCCC--C
Confidence                         0           0038999999999999999999998899999999999998543 33322211  1


Q ss_pred             cCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhhhhhhcCCceecCceEEEcC-CCC
Q 014951          342 IGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQP-MEL  415 (415)
Q Consensus       342 ~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~~~~~~g~~~TGDlg~~d~-~G~  415 (415)
                       ...+.+.+++.++|+| ++.+ .+++.|+.|||+|+|            .+.++|.++||+|||+|++|+ ||+
T Consensus       261 -~g~~~~~~~~~~~i~d-~~~g-~~~~~g~~Gel~v~~------------~t~~~~~~~~y~TGDl~~~~~~~G~  320 (437)
T 2y27_A          261 -DGPTIWEDHFYPEIID-PETG-EVLPDGELGELVFTS------------LTKEALPIIRYRTRDLTRLLPGTAR  320 (437)
T ss_dssp             -SSCEECTTTEEEEEEC-TTTC-CBCCTTCCEEEEEEE------------SSCSSSCCCSEEEEEEECEECCSSS
T ss_pred             -CceeEccCceEEEEEc-CCCC-CCCCCCCccEEEEec------------CCcCCchhheeecCCEEEEeCCCCC
Confidence             1255677899999999 5422 455677999999998            234456789999999999999 685

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=100.00  E-value=1.9e-33  Score=267.72  Aligned_cols=247  Identities=15%  Similarity=0.102  Sum_probs=186.8

Q ss_pred             eecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhhhhhhhccccCCCCCEEEEeCCh-h
Q 014951          105 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL-A  183 (415)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~-~  183 (415)
                      +.+.+++....  +.......++++++++|||||||.||+|++||+++..........+.  ...+.++|++++..|+ +
T Consensus        72 ~~~~~~l~~~~--p~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~--~~~~~~~d~~l~~~~~~~  147 (443)
T 2y4o_A           72 FSTKNDLRDNY--PFGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIR--AAGGRPGDTLHNAFGYGL  147 (443)
T ss_dssp             CBCHHHHHTTT--TTTTCSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHH--HTTCCTTCEEEECSCCSS
T ss_pred             CCcHHHHHhhC--CCcccCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHH--HcCCCCCCEEEEeccCcc
Confidence            44555555432  11233456789999999999999999999999999877655443211  1267889999999998 5


Q ss_pred             hHHHHHHHHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhc
Q 014951          184 HIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGN  262 (415)
Q Consensus       184 ~~~~~~~~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (415)
                      |..++...+.++..|+++++.+. ++..+++.|+++++|++.++|+++..+++........                   
T Consensus       148 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~-------------------  208 (443)
T 2y4o_A          148 FTGGLGIHYGAERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMD-------------------  208 (443)
T ss_dssp             SHHHHHHHHHHHHHTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCC-------------------
T ss_pred             cccHHHHHHHHHHcCCEEEECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCC-------------------
Confidence            67776677888999999998776 9999999999999999999999999987643321100                   


Q ss_pred             cccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCCceEEeeccCCCCce-eeeecCCcccc
Q 014951          263 MKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSG-CFTSLADVFNM  341 (415)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~-~~~~~~~~~~~  341 (415)
                                   .           ..+++|.+++||+++++++.+++++.+++++++.||+||+++. +.......  .
T Consensus       209 -------------~-----------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~--~  262 (443)
T 2y4o_A          209 -------------P-----------AESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECVET--K  262 (443)
T ss_dssp             -------------G-----------GGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECTTT--C
T ss_pred             -------------c-----------ccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccCCC--C
Confidence                         0           0138999999999999999999999899999999999998543 33322211  1


Q ss_pred             cCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhhhhhhcCCceecCceEEEcCC-CC
Q 014951          342 IGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPM-EL  415 (415)
Q Consensus       342 ~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~~~~~~g~~~TGDlg~~d~~-G~  415 (415)
                       ...+.+.+++.++|+|.+++  .+++.|+.|||+|+|.            +.++|.++||+|||+|++|++ |+
T Consensus       263 -~g~~~~~~~~~~~i~d~~~g--~~~~~G~~Gel~v~~~------------t~~~~p~~~y~TGDl~~~~~~cG~  322 (443)
T 2y4o_A          263 -DGPVIWEDHFYPEIIDPVTG--EVLPDGSQGELVFTSL------------TKEAMPVIRYRTRDLTALLPPTAR  322 (443)
T ss_dssp             -CSEEECTTTEEEEEECTTTC--CBCCTTCCEEEEEEES------------SCSSSCCSSEEEEEEECEECCSSS
T ss_pred             -CceEEccCCeEEEEEcCCCC--CCCCCCCceEEEEeCC------------CcccChhheeecCCEEEEcCCCCC
Confidence             12455678999999993334  4555779999999972            344566899999999999998 84

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=99.97  E-value=7.9e-31  Score=243.66  Aligned_cols=200  Identities=15%  Similarity=0.126  Sum_probs=157.5

Q ss_pred             CCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhhhhhhhccccCCCCCEEEEeCCh-hhHHHHHHHHHhhhcCcEEE
Q 014951          124 KKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL-AHIYDQIIETHCIHKGCSIG  202 (415)
Q Consensus       124 ~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~-~~~~~~~~~~~~l~~G~~vv  202 (415)
                      ..++++++++|||||||.||+|+++|+++..........+  ....+..+|++++.+|+ +|..++...+.++..|+.++
T Consensus        88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~--~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~  165 (369)
T 3hgu_A           88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGY--QHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFF  165 (369)
T ss_dssp             SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTT--TTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEE
T ss_pred             CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhH--HhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEE
Confidence            4678999999999999999999999999998887544322  12266889999999999 99999888777788999444


Q ss_pred             EeCCCHH-----------------------HHHHHHHhhCCeEEEeCcHHHHHHHHHHHHhhhcCChhhHHHHHHHHHhh
Q 014951          203 FWRGDVR-----------------------YLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYK  259 (415)
Q Consensus       203 ~~~~~~~-----------------------~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (415)
                      ..+.++.                       .+++.|+++++|++.++|+++..+++..                      
T Consensus       166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~----------------------  223 (369)
T 3hgu_A          166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRP----------------------  223 (369)
T ss_dssp             CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCH----------------------
T ss_pred             CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhh----------------------
Confidence            4444776                       8888999999999999999999886521                      


Q ss_pred             hhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHH-Hhc-CCceEEeeccCCCCceeeeecCC
Q 014951          260 LGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLR-VTS-GAPLTQGYGLTESCSGCFTSLAD  337 (415)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~-~~~-~~~~~~~yG~tE~~~~~~~~~~~  337 (415)
                                     .....++        +++|.+++||+++++++.+++. +.+ ++++++.||+||+++++..... 
T Consensus       224 ---------------~~~~~~~--------~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~-  279 (369)
T 3hgu_A          224 ---------------EVVLQMK--------QSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI-  279 (369)
T ss_dssp             ---------------HHHHHHH--------HHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-
T ss_pred             ---------------hhhcccc--------CCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-
Confidence                           0111112        2799999999999999999999 888 8999999999998866533211 


Q ss_pred             cccccCccccc------ccCeEEEEeecC-CCCCCCCCCCCCCeEEEec
Q 014951          338 VFNMIGTVGVP------MTTVEARLESVP-EMGYDALSSVPRGEICLRG  379 (415)
Q Consensus       338 ~~~~~~~~G~~------~~g~~~~i~~~~-~~~~~~~~~~~~Gel~v~~  379 (415)
                           .++|+|      .++++++|+| + ++.  +++.|+.|||+|++
T Consensus       280 -----~~~G~~~~~~~~~~~~~v~ivD-~~~g~--~vp~G~~GEl~vt~  320 (369)
T 3hgu_A          280 -----TSESQQVIYDSFSPFITYDVVD-SITAQ--TVEYGERGNVIVTH  320 (369)
T ss_dssp             -----CTTCSSCEEECCTTTEEEEEEC-TTTCS--BCCTTCEEEEEEEE
T ss_pred             -----ccCCCcccccCCCCCeEEEEEC-CCCCc--CCCCCCceEEEEEE
Confidence                 248899      9999999999 5 554  55677999999987

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=97.26  E-value=0.0048  Score=59.32  Aligned_cols=32  Identities=25%  Similarity=0.281  Sum_probs=26.8

Q ss_pred             CCCCCeEEEEecCCCC-CCCceEEeecHHHHHH
Q 014951          124 KKKTNISTIMYTSGTT-GEPKGVVLTNQAIVAE  155 (415)
Q Consensus       124 ~~~~~~~~i~~TSGtT-G~pK~v~~th~~l~~~  155 (415)
                      ..++.+.++.-||||| |.||-|++|...+...
T Consensus        96 l~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~~  128 (609)
T 4b2g_A           96 LSAHPISEFLTSSGTSAGERKLMPTIQEELDRR  128 (609)
T ss_dssp             SCSSCCCEEEEEEEEETTEEEEEEECTTHHHHH
T ss_pred             cCCCCCCeEEeCCCCCCCCceeeecCHHHHHHH
Confidence            3566778899999999 7799999999977664

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=97.19  E-value=0.013  Score=56.13  Aligned_cols=32  Identities=22%  Similarity=0.272  Sum_probs=26.3

Q ss_pred             CCCCCeEEEEecCCCC-CCCceEEeecHHHHHH
Q 014951          124 KKKTNISTIMYTSGTT-GEPKGVVLTNQAIVAE  155 (415)
Q Consensus       124 ~~~~~~~~i~~TSGtT-G~pK~v~~th~~l~~~  155 (415)
                      ..++.+.++.-||||| |.+|-+++|...+-..
T Consensus        90 L~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~~  122 (581)
T 4eql_A           90 ISARTITGFLLSSGTSGGAQKMMPWNNKYLDNL  122 (581)
T ss_dssp             TCSSCCCEEEEEEEEETTEEEEEEECHHHHHHH
T ss_pred             cCCCCCCeEEeCCCCCCCCccccccCHHHHHHH
Confidence            3456677899999999 6799999999977654

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=96.15  E-value=0.017  Score=55.24  Aligned_cols=32  Identities=25%  Similarity=0.397  Sum_probs=26.4

Q ss_pred             CCCCCeEEEEecCCCC-CCCceEEeecHHHHHH
Q 014951          124 KKKTNISTIMYTSGTT-GEPKGVVLTNQAIVAE  155 (415)
Q Consensus       124 ~~~~~~~~i~~TSGtT-G~pK~v~~th~~l~~~  155 (415)
                      ..++.+.++.-||||| |.+|-+++|...+...
T Consensus        95 L~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~~  127 (581)
T 4epl_A           95 LTGHPVPAISLSSGTSQGRPKFIPFTDELMENT  127 (581)
T ss_dssp             SSSSCCSEEEEEEEEETTEEEEEEECHHHHHHH
T ss_pred             cCCCCcceEEecCCCCCCCccccccCHHHHHHH
Confidence            3556678899999999 7799999999877653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	415
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	5e-53
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	3e-47
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	4e-42
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	7e-39
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	4e-24
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	2e-23
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	7e-19

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  185 bits (470), Expect = 5e-53
 Identities = 58/434 (13%), Positives = 122/434 (28%), Gaps = 73/434 (16%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           +   G+  GD   IY    PE  +AM AC      +  ++      AV   I  +   + 
Sbjct: 120 LLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLV 179

Query: 61  FVQE------NKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQL 114
              +        IP   +          T V    V      + +        W + ++ 
Sbjct: 180 ITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEK 239

Query: 115 GTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVL-SVDQMFVVTGKVCSEE 173
            + + +       +   I+YTSG+TG+PKGV+ T    +     +   +F          
Sbjct: 240 ASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYH-----PG 294

Query: 174 DTYFSFLPLAHIYDQIIETH-CIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVP 227
           D Y+    +  +       +  +  G +   + G         + + + + +  +    P
Sbjct: 295 DIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAP 354

Query: 228 RVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREA 287
                +                                     +    ++    S +R  
Sbjct: 355 TAIRALM-----------------------------------AEGDKAIEGTDRSSLR-- 377

Query: 288 FGGRLQAMLSGAAPLPIHV-EEFLRVT--SGAPLTQGYGLTESCSGCFTSLADVFNM-IG 343
                  + S   P+     E + +       P+   +  TE+     T L     +  G
Sbjct: 378 ------ILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAG 431

Query: 344 TVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGN--TLFSGYYKRPDLTEEVIV--- 398
           +   P   V+  L  V   G+    +   G + +  +        +   +  E+      
Sbjct: 432 SATRPFFGVQPAL--VDNEGHPQEGATE-GNLVITDSWPGQARTLFGDHERFEQTYFSTF 488

Query: 399 DGWFHTGDIGEWQP 412
              + +GD      
Sbjct: 489 KNMYFSGDGARRDE 502

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  168 bits (427), Expect = 3e-47
 Identities = 70/432 (16%), Positives = 130/432 (30%), Gaps = 69/432 (15%)

Query: 2   RSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAF 61
            S GV  GD   +Y    PE II + A +     +  ++    +N++   IN  +  +  
Sbjct: 109 YSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVI 168

Query: 62  VQEN-----KIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT 116
             +      K+      +         +        +              W    +   
Sbjct: 169 TTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYK 228

Query: 117 LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTY 176
                 P    +   ++YTSG+TG PKGV  +    +   L   +    T     +ED +
Sbjct: 229 TYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDT----HQEDVF 284

Query: 177 FSFLPLAHIYDQIIETH-CIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVY 230
           F+   +  I       +  +  GC+   + G     +     + I E K T F   P   
Sbjct: 285 FTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTAL 344

Query: 231 DRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGG 290
             +                                   +      +++     +R     
Sbjct: 345 RLL-----------------------------------KRAGDSYIENHSLKSLR----- 364

Query: 291 RLQAMLSGAAPLPIHVEEFLRVTSG---APLTQGYGLTESCSGCFTSLADVFNMI--GTV 345
               + S   P+   V E+     G    P+   Y  TES S   T LA     +  G+ 
Sbjct: 365 ---CLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSA 421

Query: 346 GVPMTTVEARLESVPEMGYDALSSVPRGEICLRGN--TLFSGYYKRPDLTEEVIV---DG 400
             P   ++A +   P  G +  +S   G + ++    +     +K  D   +  +    G
Sbjct: 422 SFPFFGIDAVVLD-PNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPG 480

Query: 401 WFHTGDIGEWQP 412
           ++ TGD      
Sbjct: 481 YYFTGDGAAKDK 492

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  153 bits (387), Expect = 4e-42
 Identities = 81/425 (19%), Positives = 136/425 (32%), Gaps = 77/425 (18%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           +R+ GV  GDR    G N    + A  A              L    + +I+NHAE  + 
Sbjct: 57  LRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVL 116

Query: 61  FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE 120
               N +P + +           +V                  +   +  + +    + +
Sbjct: 117 LFDPNLLPLVEAIRGELKTVQHFVVMDEK--------------APEGYLAYEEALGEEAD 162

Query: 121 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 180
                +     + YT+GTTG PKGVV +++A+V   L+   +        SE+D     +
Sbjct: 163 PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTA---LSEKDVVLPVV 219

Query: 181 PLAHIYDQIIETHCIHKGCSIGF--WRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGIS 238
           P+ H+    +       G        R D   L+E       T  +GVP V+  +     
Sbjct: 220 PMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLAL----- 274

Query: 239 NKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSG 298
                                                     + +        L+ ++ G
Sbjct: 275 ----------------------------------------ADYLESTGHRLKTLRRLVVG 294

Query: 299 AAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFT----------SLADVFNMIGTVGVP 348
            +  P  +        G  + QGYGLTE+                S  +   +    G+P
Sbjct: 295 GSAAPRSLIARFERM-GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLP 353

Query: 349 MTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHTGDI 407
           +  V  R+    E           GE+ L+G  +  GYY   + T   +  DG+F TGDI
Sbjct: 354 IPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDI 412

Query: 408 GEWQP 412
             W  
Sbjct: 413 AVWDE 417

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  144 bits (364), Expect = 7e-39
 Identities = 76/420 (18%), Positives = 138/420 (32%), Gaps = 64/420 (15%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           M+  G+N   R  +   N  ++ + +       +   P  D      +   +N ++ ++ 
Sbjct: 64  MKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVV 123

Query: 61  FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE 120
           FV +  +  IL+   +  +  K I+  +       +               L  G  + +
Sbjct: 124 FVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTF------VTSHLPPGFNEYD 177

Query: 121 LPPK---KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYF 177
             P+   +   I+ IM +SG+TG PKGV L ++                  +        
Sbjct: 178 FVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSV 237

Query: 178 SFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGI 237
                       +  + I     +  +R +    +  +Q+ K      VP ++       
Sbjct: 238 VPFHHGFGMFTTL-GYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFA--- 293

Query: 238 SNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLS 297
                                              + L+D    S + E   G       
Sbjct: 294 ----------------------------------KSTLIDKYDLSNLHEIASG------- 312

Query: 298 GAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLE 357
           GA       E   +      + QGYGLTE  +       +  +  G VG  +   EA++ 
Sbjct: 313 GAPLSKEVGEAVAKRFHLPGIRQGYGLTE-TTSAILITPEGDDKPGAVGKVVPFFEAKV- 370

Query: 358 SVPEMGYDALSSVP---RGEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHTGDIGEWQPM 413
               +  D   ++    RGE+C+RG  + SGY   P+ T  +I  DGW H+GDI  W   
Sbjct: 371 ----VDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDED 426

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score =  101 bits (253), Expect = 4e-24
 Identities = 69/423 (16%), Positives = 133/423 (31%), Gaps = 95/423 (22%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
              +G+      GI      +  I + A       YVP+        +++I++ ++  + 
Sbjct: 65  FIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARML 124

Query: 61  FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE 120
             Q++ +  I                            +  G      E+ +++      
Sbjct: 125 LTQKHLVHLI-------------------------HNIQFNGQVEIFEEDTIKIREGTNL 159

Query: 121 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 180
             P K T+++ ++YTSGTTG PKG +L ++ I        ++F       +E+D    F 
Sbjct: 160 HVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGIS-----NLKVFFENSLNVTEKDRIGQFA 214

Query: 181 PLAHIYDQIIETHCIHKGCSI----GFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTG 236
            ++           +  G S+         D     + I + + T+ +  P         
Sbjct: 215 SISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVV----- 269

Query: 237 ISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAML 296
                                             +    + +L+                
Sbjct: 270 ------------------------------HLDPERILSIQTLIT--------------- 284

Query: 297 SGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARL 356
           +G+A  P  V ++            YG TE+     T +A    +  +V +       ++
Sbjct: 285 AGSATSPSLVNKWKE---KVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQI 341

Query: 357 ESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-------DGWFHTGDIGE 409
             V E           GE+C+ G  L  GY+KRP+LT +  V       +  + TGD   
Sbjct: 342 YIVDENLQLKSVGEA-GELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQAR 400

Query: 410 WQP 412
           W  
Sbjct: 401 WLS 403

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score = 99.7 bits (247), Expect = 2e-23
 Identities = 68/416 (16%), Positives = 118/416 (28%), Gaps = 74/416 (17%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
           + + G+ P  R  +   N  + +IA+ A +        L   L +  +  +I   E++ A
Sbjct: 46  LHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAA 105

Query: 61  FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE 120
            +   +   +   + +     + I     V   +                         E
Sbjct: 106 VIAVGR--QVADAIFQSGSGARIIFLGDLVRDGEPYSYGP-----------------PIE 146

Query: 121 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 180
            P ++    + I YTSGTTG PK  ++  +A  + VL +              +     +
Sbjct: 147 DPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVG---LRHGRHNVVLGLM 203

Query: 181 PLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNK 240
           PL H+                G +     +   D  +L                      
Sbjct: 204 PLYHVVGFFAVLVAALALD--GTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLD----- 256

Query: 241 ISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAA 300
                                              L +             L+ +    A
Sbjct: 257 ----------------------------------ALAAAAAHAGSSLKLDSLRHVTFAGA 282

Query: 301 PLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVP 360
            +P  V E +           YG TE+ +  +          GT   P    E R   + 
Sbjct: 283 TMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYM----RQPKTGTEMAPGFFSEVR---IV 335

Query: 361 EMGYDALSSVPRGE----ICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQP 412
            +G      V  GE    I    ++ F GY  +P  T E + DGW+ T D+  W P
Sbjct: 336 RIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTP 391

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score = 86.2 bits (212), Expect = 7e-19
 Identities = 56/414 (13%), Positives = 112/414 (27%), Gaps = 63/414 (15%)

Query: 1   MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
            +  G+   DR  +   N  E+   + A        V    +  ++ + +    AE +  
Sbjct: 67  FQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAY 126

Query: 61  FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE 120
            + +         L R        +           +   +      +     L T   +
Sbjct: 127 IIPDAYSGFDYRSLARQVQSKLPTL-----------KNIIVAGEAEEFLPLEDLHTEPVK 175

Query: 121 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 180
           LP  K ++++ +  + G+TG  K +  T+   +     + +   V     S        +
Sbjct: 176 LPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYS---LKRSVEVCWLDHSTVYLAALPM 232

Query: 181 PLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISN 239
              +          ++ G  +              I+  K T+ + VP +          
Sbjct: 233 AHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMD---- 288

Query: 240 KISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGA 299
                                                     +  R      LQ +  G 
Sbjct: 289 -----------------------------------------AASSRRDDLSSLQVLQVGG 307

Query: 300 APLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESV 359
           A         ++   G  L Q +G+ E              ++ T G PM+  +      
Sbjct: 308 AKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESR-VW 366

Query: 360 PEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVD-GWFHTGDIGEWQP 412
            +   D +     G +  RG     GYYK  +       + G++ TGDI     
Sbjct: 367 DDHDRD-VKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTR 419

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	415
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d1amua_	514	Phenylalanine activating domain of gramicidin synt	100.0
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	100.0
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	83.34
d1amua_	514	Phenylalanine activating domain of gramicidin synt	80.31
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	80.14

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=4e-54  Score=425.03  Aligned_cols=360  Identities=15%  Similarity=0.203  Sum_probs=282.6

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChh---------hhh
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP---------SIL   71 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~   71 (415)
                      |+++||++||+|+++++|++++++++|||+++|++++|+++.++++++.+++++++++++|++++...         .+.
T Consensus       120 L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~  199 (643)
T d1pg4a_         120 LLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVD  199 (643)
T ss_dssp             HHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHH
T ss_pred             HHHcCCCCCCEEEEecccchHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHH
Confidence            46789999999999999999999999999999999999999999999999999999999999875321         111


Q ss_pred             hcC-ccCCCCccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecH
Q 014951           72 SCL-PRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQ  150 (415)
Q Consensus        72 ~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~  150 (415)
                      ... ......++.++.+........    ........+.+..............+++|+++|+|||||||.||||++||+
T Consensus       200 ~~l~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~  275 (643)
T d1pg4a_         200 DALKNPNVTSVEHVIVLKRTGSDID----WQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTG  275 (643)
T ss_dssp             HHHTSTTCCSCCEEEEECSSCCCCC----CCBTTEEEHHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESH
T ss_pred             HHHhccccccceEEEEeccCCcccc----cccccchhhhhhhcccCcccCCCCCCCCCeEEEEeCCCcccCCCEEEEccH
Confidence            111 112355667777655432110    001112334444444333444556678999999999999999999999999


Q ss_pred             HHHHHhhh-hhhhhhhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC-----CHHHHHHHHHhhCCeEE
Q 014951          151 AIVAEVLS-VDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMF  223 (415)
Q Consensus       151 ~l~~~~~~-~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~-----~~~~~~~~i~~~~~t~~  223 (415)
                      +++..... ....+     .+.++|++++.+|++|.+++.. ++.+|+.|+++++.+.     ++..+++.|+++++|++
T Consensus       276 ~~l~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~  350 (643)
T d1pg4a_         276 GYLVYAATTFKYVF-----DYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNIL  350 (643)
T ss_dssp             HHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEE
T ss_pred             HHHHHHHHHHHHhh-----CCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEE
Confidence            97755443 33334     6789999999999999999876 6678999999998753     78999999999999999


Q ss_pred             EeCcHHHHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCC
Q 014951          224 SGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLP  303 (415)
Q Consensus       224 ~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~  303 (415)
                      +++|++++.+++.....                                   ....++        ++||.++++|++++
T Consensus       351 ~~~P~~l~~l~~~~~~~-----------------------------------~~~~dl--------~sLr~i~~~G~pl~  387 (643)
T d1pg4a_         351 YTAPTAIRALMAEGDKA-----------------------------------IEGTDR--------SSLRILGSVGEPIN  387 (643)
T ss_dssp             EECHHHHHHHHTTGGGG-----------------------------------TTTCCC--------TTCCEEEEESSCCC
T ss_pred             EehHHHHHHHHhCcchh-----------------------------------ccccCC--------CceEEEEEEeCCCC
Confidence            99999999886521111                                   111111        48999999999999


Q ss_pred             HHHHHHHHHhcC---CceEEeeccCCCCceeeeecCCc-ccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEec
Q 014951          304 IHVEEFLRVTSG---APLTQGYGLTESCSGCFTSLADV-FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRG  379 (415)
Q Consensus       304 ~~~~~~~~~~~~---~~~~~~yG~tE~~~~~~~~~~~~-~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~  379 (415)
                      +++.+++.+.++   +++++.||+||+++.++...+.. ..+.+++|+|++|++++|+| +++.+  ++.++.|||+|+|
T Consensus       388 ~~~~~~~~~~~g~~~~~i~~~yG~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~ivd-~~g~~--~~~g~~Gel~v~~  464 (643)
T d1pg4a_         388 PEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHP--QEGATEGNLVITD  464 (643)
T ss_dssp             HHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCB--CCSSEEEEEEECS
T ss_pred             HHHHHHHHHHhCCCCceEEEeechhhccceEEecCCCccCCCCCccccccCCCEEEEEC-CCCCC--CCCCceEEEEEec
Confidence            999999998884   67999999999988766554432 34468999999999999999 77754  4556899999999


Q ss_pred             --CCccccccCCchhhhhhh---cCCceecCceEEEcCCCC
Q 014951          380 --NTLFSGYYKRPDLTEEVI---VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       380 --~~~~~gY~~~~~~~~~~~---~~g~~~TGDlg~~d~~G~  415 (415)
                        |+++.|||++++.+.+.+   .+|||+|||+|++|+||+
T Consensus       465 ~~p~~~~~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~  505 (643)
T d1pg4a_         465 SWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGY  505 (643)
T ss_dssp             CCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSC
T ss_pred             CCCcccccccCChhhchhhhcccCCCeEEcCCEEEECCCce
Confidence              578999999999888765   489999999999999996

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.3e-51  Score=400.79  Aligned_cols=351  Identities=23%  Similarity=0.332  Sum_probs=287.1

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |.++|+++||+|+++++|++++++++|||+++|++++|++|.++.+++.++++.+++++++++.............. ..
T Consensus        57 L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~~  135 (534)
T d1v25a_          57 LRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGEL-KT  135 (534)
T ss_dssp             HHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGC-SS
T ss_pred             HHHCCcCCCCEEEEEeCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHhhcc-cc
Confidence            45789999999999999999999999999999999999999999999999999999999999998887766554433 45


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD  160 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~  160 (415)
                      .+..+.........          .......   ...........++++++++|||||||.||+|+++|.+++.......
T Consensus       136 ~~~~~~~~~~~~~~----------~~~~~~~---~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~  202 (534)
T d1v25a_         136 VQHFVVMDEKAPEG----------YLAYEEA---LGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAAS  202 (534)
T ss_dssp             CCEEEESSSCCCTT----------CEEHHHH---CCSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTT
T ss_pred             cceeEEeecccccc----------ccccccc---ccccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhh
Confidence            55555554432110          1111111   1122234456788999999999999999999999999987664432


Q ss_pred             hhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC--CHHHHHHHHHhhCCeEEEeCcHHHHHHHHHHH
Q 014951          161 QMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGIS  238 (415)
Q Consensus       161 ~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  238 (415)
                      ...   .......|++++++|++|.+++...+..+..|+++++...  ++..+...++++++|++.++|.++..++....
T Consensus       203 ~~~---~~~~~~~d~~~~~~p~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~  279 (534)
T d1v25a_         203 LVD---GTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLE  279 (534)
T ss_dssp             STT---TTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHH
T ss_pred             hhc---ccccccccccccccchhhhccccccceeeeecceeeeccccccccccchhhhhccccccccCchhhhhhhhhhc
Confidence            221   2266789999999999999999888877778887777654  89999999999999999999999998876433


Q ss_pred             HhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCCce
Q 014951          239 NKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPL  318 (415)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~~~  318 (415)
                      ....                                             ..++||.+++||+++++++.+++++ ++.++
T Consensus       280 ~~~~---------------------------------------------~~~~lr~~~~gG~~~~~~~~~~~~~-~~~~i  313 (534)
T d1v25a_         280 STGH---------------------------------------------RLKTLRRLVVGGSAAPRSLIARFER-MGVEV  313 (534)
T ss_dssp             HHTC---------------------------------------------CCSSCCEEEECSSCCCHHHHHHHHH-TTCEE
T ss_pred             cccc---------------------------------------------cccceeEEEEecCCCCHHHHHHHHH-hCCee
Confidence            2211                                             1158999999999999999999885 68999


Q ss_pred             EEeeccCCCCceeeeecCCcc----------cccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccC
Q 014951          319 TQGYGLTESCSGCFTSLADVF----------NMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYK  388 (415)
Q Consensus       319 ~~~yG~tE~~~~~~~~~~~~~----------~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~  388 (415)
                      ++.||+||++..+........          ...+++|+|++|++++|+| ++++.++.+.++.|||+|+|++++.|||+
T Consensus       314 ~~~yG~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~~~~~~~~~~~~Gel~v~g~~v~~gY~~  392 (534)
T d1v25a_         314 RQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYG  392 (534)
T ss_dssp             EEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBT
T ss_pred             eeeccccccccceeecccCccccccCccccccccccceeccCCcEEEEEC-CCCCCCCCCCCeeEEEEEcCCcccceecC
Confidence            999999999988776543321          1247899999999999999 88988888888999999999999999999


Q ss_pred             Cchhhhhhh-cCCceecCceEEEcCCCC
Q 014951          389 RPDLTEEVI-VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       389 ~~~~~~~~~-~~g~~~TGDlg~~d~~G~  415 (415)
                      +++.+...| .||||+|||+|++|+||+
T Consensus       393 ~~~~t~~~~~~dg~~~TGDlg~~~~~G~  420 (534)
T d1v25a_         393 NEEATRSALTPDGFFRTGDIAVWDEEGY  420 (534)
T ss_dssp             CHHHHHTTBCTTSCEEEEEEEEECTTCC
T ss_pred             ChhhhhhhcccCCCCccCceeEECCCcc
Confidence            999999998 899999999999999995

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=1.4e-51  Score=401.30  Aligned_cols=355  Identities=23%  Similarity=0.359  Sum_probs=280.1

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |+++||++||+|+++++|++++++++|||+++|++++|+++.++.+++.++|+.++++++|++++..+.+.+..... +.
T Consensus        64 L~~~Gi~~Gd~Vai~~~ns~e~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~  142 (541)
T d1lcia_          64 MKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKL-PI  142 (541)
T ss_dssp             HHHHTCCTTCEEEEECSSCSSTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHC-TT
T ss_pred             HHHcCcCCCCEEEEEeCCCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhccccc-cc
Confidence            45679999999999999999999999999999999999999999999999999999999999998887776655433 66


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhc----C---CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHH
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQL----G---TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV  153 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~  153 (415)
                      .+.++.++......         .+..+.+....    .   ....+.....++++++|+|||||||.||+|++||++++
T Consensus       143 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~  213 (541)
T d1lcia_         143 IQKIIIMDSKTDYQ---------GFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTAC  213 (541)
T ss_dssp             CCEEEETTCSSCBT---------TBEEHHHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHH
T ss_pred             cceeeeecCCcccc---------ccchhhhhhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhh
Confidence            67777776543211         12222222211    1   11222344567889999999999999999999999998


Q ss_pred             HHhhhhhhhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHH
Q 014951          154 AEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDR  232 (415)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~  232 (415)
                      .........+  ........+++++++|++|..+....+..+..++.++.... +.......+.++++|.+..+|.++..
T Consensus       214 ~~~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~  291 (541)
T d1lcia_         214 VRFSHARDPI--FGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSF  291 (541)
T ss_dssp             HHHHHHTCTT--TSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHH
T ss_pred             hhhhhhhhhc--ccccccccccccccccccccccccccccccccccccccccccccchhHHHHhhhhccccccCcccccc
Confidence            8766554432  12256789999999999999999888777777777777765 99999999999999999999999988


Q ss_pred             HHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHH
Q 014951          233 IYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRV  312 (415)
Q Consensus       233 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~  312 (415)
                      ++.....                                     ...+        .++++.+++||+++++...+++.+
T Consensus       292 ~~~~~~~-------------------------------------~~~~--------~~~l~~v~~gG~~~~~~~~~~~~~  326 (541)
T d1lcia_         292 FAKSTLI-------------------------------------DKYD--------LSNLHEIASGGAPLSKEVGEAVAK  326 (541)
T ss_dssp             HHHCSCG-------------------------------------GGSC--------CTTCCEEECTTCCCCHHHHHHHHH
T ss_pred             ccccccc-------------------------------------cccc--------cccceEEEeccccccccccccccc
Confidence            7651110                                     0101        148999999999999999999998


Q ss_pred             hcCC-ceEEeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCch
Q 014951          313 TSGA-PLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPD  391 (415)
Q Consensus       313 ~~~~-~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~  391 (415)
                      .++. .+++.||+||++..++....... ..+++|+|+||++++|+| +|.+ .+++.|+.|||+|+|++++.||+++++
T Consensus       327 ~~~~~~~~~~YG~TE~~~~~~~~~~~~~-~~~svG~p~~~~~~~i~d-~d~~-~~~~~g~~Gel~v~g~~~~~gY~~~~~  403 (541)
T d1lcia_         327 RFHLPGIRQGYGLTETTSAILITPEGDD-KPGAVGKVVPFFEAKVVD-LDTG-KTLGVNQRGELCVRGPMIMSGYVNNPE  403 (541)
T ss_dssp             HTTCSCCBCEECCGGGSSCSEECCCC----CCCCBEECTTCEEEEEC-TTTC-CBCCTTCCEEEEEESTTSCSEETTBHH
T ss_pred             ccCCceeeecCCccccCceEEecCcccC-CCCccccccCCCEEEEEE-CCCC-cCCCCCCeEEEEEccCccCCeeCCChh
Confidence            8875 68999999999988777655443 448999999999999999 4433 456677999999999999999999999


Q ss_pred             hhhhhh-cCCceecCceEEEcCCCC
Q 014951          392 LTEEVI-VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       392 ~~~~~~-~~g~~~TGDlg~~d~~G~  415 (415)
                      .+...+ .+|||+|||+|++|+||+
T Consensus       404 ~~~~~~~~~~~~~TGDl~~~~~~G~  428 (541)
T d1lcia_         404 ATNALIDKDGWLHSGDIAYWDEDEH  428 (541)
T ss_dssp             HHHHHBCTTSCEEEEEEEEECTTCC
T ss_pred             hhhhcccCCccccCCCeeEEcCCeE
Confidence            888887 689999999999999985

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-51  Score=409.27  Aligned_cols=360  Identities=19%  Similarity=0.253  Sum_probs=278.4

Q ss_pred             cCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChh---------hhhhc
Q 014951            3 SRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP---------SILSC   73 (415)
Q Consensus         3 ~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~~~   73 (415)
                      ++||++||+|+++++|++++++++|||+++|++++|+++.++++++.++++++++++++++.....         .+...
T Consensus       110 ~~Gv~~Gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (640)
T d1ry2a_         110 SMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDA  189 (640)
T ss_dssp             TSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHH
T ss_pred             hcCCCCCCEEEEEeCCCHHHHHHHHHhccCceEeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhh
Confidence            579999999999999999999999999999999999999999999999999999999999875422         11122


Q ss_pred             CccCCCCccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHH
Q 014951           74 LPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV  153 (415)
Q Consensus        74 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~  153 (415)
                      .. .....+.............   ........................+..++|+++|+|||||||.||||+++|++++
T Consensus       190 ~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~  265 (640)
T d1ry2a_         190 LR-ETPGVRHVLVYRKTNNPSV---AFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYL  265 (640)
T ss_dssp             TT-SCTTCCEEEEECSSCCSSC---CCCSSSEEEHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHH
T ss_pred             hh-hhcccceeeeecccccccc---cccccccccccccccccccccccCCcccccCCEEEECCCCCCCCcceeeccccHH
Confidence            22 1233344444332211100   0001112223333333333444556678999999999999999999999999988


Q ss_pred             HHhhhhhh-hhhhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC-----CHHHHHHHHHhhCCeEEEeC
Q 014951          154 AEVLSVDQ-MFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGV  226 (415)
Q Consensus       154 ~~~~~~~~-~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~-----~~~~~~~~i~~~~~t~~~~~  226 (415)
                      .+...... .+     .+.++|++++.+|++|.++... ++.++..|+++++.+.     ++..+++.|+++++|++.++
T Consensus       266 ~~~~~~~~~~~-----~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~  340 (640)
T d1ry2a_         266 LGALLTMRYTF-----DTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVA  340 (640)
T ss_dssp             HHHHHHHHHHS-----CCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEEC
T ss_pred             HHHHHHHHhhc-----CCCcccceeeccchhhhhhHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcC
Confidence            77654433 23     6789999999999999999875 6778999999888754     78999999999999999999


Q ss_pred             cHHHHHHHHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHH
Q 014951          227 PRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV  306 (415)
Q Consensus       227 P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~  306 (415)
                      |++++.+.+....                                   .....++        ++||.+++||+++++++
T Consensus       341 P~~~~~l~~~~~~-----------------------------------~~~~~~l--------~sLr~v~~gG~~l~~~~  377 (640)
T d1ry2a_         341 PTALRLLKRAGDS-----------------------------------YIENHSL--------KSLRCLGSVGEPIAAEV  377 (640)
T ss_dssp             HHHHHHHTTSCTT-----------------------------------SSSSCCC--------TTCCEEEECSSCCCHHH
T ss_pred             hHHHHHHHhcccc-----------------------------------ccccCCC--------CceEEEEEecccCcHHH
Confidence            9999887431100                                   0011111        48999999999999999


Q ss_pred             HHHHHHhcC---CceEEeeccCCCCceeeeecCCc--ccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEec--
Q 014951          307 EEFLRVTSG---APLTQGYGLTESCSGCFTSLADV--FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRG--  379 (415)
Q Consensus       307 ~~~~~~~~~---~~~~~~yG~tE~~~~~~~~~~~~--~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~--  379 (415)
                      .+++.+.++   ..+++.||+||++..+.......  ..+++++|+|++|++++|+| ++++....+.++.|||++++  
T Consensus       378 ~~~~~~~~g~~~~~i~~~yg~te~~~~~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d-~~~~~~~~~~~~~Gel~i~~~~  456 (640)
T d1ry2a_         378 WEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLD-PNTGEELNTSHAEGVLAVKAAW  456 (640)
T ss_dssp             HHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEEC-SSSTTCEECSSCEEEEEESSCC
T ss_pred             HHHHHHhcCCCcceEEeeecccccccccccccCCCcCCCCCcccccccCCceEEEEe-CCCCcccCCCCceEEEEEEecC
Confidence            999999886   46999999999988766554433  23468999999999999999 77766666666789999998  


Q ss_pred             CCccccccCCchhhhhhh---cCCceecCceEEEcCCCC
Q 014951          380 NTLFSGYYKRPDLTEEVI---VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       380 ~~~~~gY~~~~~~~~~~~---~~g~~~TGDlg~~d~~G~  415 (415)
                      |+++.|||++++.+.+.|   .+|||+|||+|++|+||+
T Consensus       457 p~~~~gy~~~~e~t~~~~~~~~~gw~~TGDlg~~d~dG~  495 (640)
T d1ry2a_         457 PSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGY  495 (640)
T ss_dssp             TTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCC
T ss_pred             CCcccccccCHHHHHhhhccCCCCeEEcCCceeECCCCC
Confidence            689999999999999887   359999999999999996

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=100.00  E-value=6.6e-46  Score=358.84  Aligned_cols=329  Identities=19%  Similarity=0.278  Sum_probs=264.1

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |+++|+++||+|+++++|++++++++|||+++|++++|+++.++++++.++++.++++++|++....+.+.......   
T Consensus        65 L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~---  141 (514)
T d1amua_          65 FIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNG---  141 (514)
T ss_dssp             HHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCS---
T ss_pred             HHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhhcccc---
Confidence            46789999999999999999999999999999999999999999999999999999999999988776655433211   


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhh
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD  160 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~  160 (415)
                        .........                    ...........+..++++++|+|||||||.||+|.+||.++........
T Consensus       142 --~~~~~~~~~--------------------~~~~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~  199 (514)
T d1amua_         142 --QVEIFEEDT--------------------IKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFE  199 (514)
T ss_dssp             --EEEECCCST--------------------TTTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHH
T ss_pred             --ccccccccc--------------------ccccccccCCCCCCcccceEEEEccCCCCCccccccccccccccccccc
Confidence              111111110                    0011122233455789999999999999999999999999999998877


Q ss_pred             hhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC----CHHHHHHHHHhhCCeEEEeCcHHHHHHHHH
Q 014951          161 QMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTG  236 (415)
Q Consensus       161 ~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~  236 (415)
                      ..+     .....+++++..|++|..++..++.++..|+++++...    +....++.+..+.++.+..+|........ 
T Consensus       200 ~~~-----~~~~~d~~l~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  273 (514)
T d1amua_         200 NSL-----NVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDP-  273 (514)
T ss_dssp             HTS-----CCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCT-
T ss_pred             ccc-----cccccccccceeccccccccccccccccccccccccccccccchhhhhhhhhhhhcccccceeeecccccc-
Confidence            666     88899999999999999999988888999999888753    67888999999999999999876543100 


Q ss_pred             HHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhcCC
Q 014951          237 ISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGA  316 (415)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~~~~  316 (415)
                                                                        ....+++.++++|+++++++.+++.+  +.
T Consensus       274 --------------------------------------------------~~~~~l~~~~~~G~~~~~~~~~~~~~--~~  301 (514)
T d1amua_         274 --------------------------------------------------ERILSIQTLITAGSATSPSLVNKWKE--KV  301 (514)
T ss_dssp             --------------------------------------------------TTCCSCSEEEEESSCCCHHHHHHHTT--TS
T ss_pred             --------------------------------------------------cccccccEEEEecccCCHHHhhhhcc--ce
Confidence                                                              00148999999999999999888765  78


Q ss_pred             ceEEeeccCCCCceeeeecCCcc--cccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhhh
Q 014951          317 PLTQGYGLTESCSGCFTSLADVF--NMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTE  394 (415)
Q Consensus       317 ~~~~~yG~tE~~~~~~~~~~~~~--~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~~  394 (415)
                      .+++.||+||++.++........  ...++.|.+.++..+.+.| +++..++  .|+.|||+|+||.+++|||++++.+.
T Consensus       302 ~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~~~~--~g~~GEl~v~~~~~~~gY~~~~~~~~  378 (514)
T d1amua_         302 TYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKS--VGEAGELCIGGEGLARGYWKRPELTS  378 (514)
T ss_dssp             EEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEEC-TTSCBCC--TTCEEEEEEEETTCCCEETTCHHHHH
T ss_pred             eEEEeeccccCceeeeeccccccccCcccccccceeeeeEeeec-ccceecC--CCCeeEEEEccCcccccccccccccc
Confidence            99999999999988765554433  2346789999999999999 7765444  55999999999999999999999988


Q ss_pred             hhhc-------CCceecCceEEEcCCCC
Q 014951          395 EVIV-------DGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       395 ~~~~-------~g~~~TGDlg~~d~~G~  415 (415)
                      +.|.       +|||+|||+|++|+||+
T Consensus       379 ~~~~~~~~~~~~~~~~TGD~g~~d~~G~  406 (514)
T d1amua_         379 QKFVDNPFVPGEKLYKTGDQARWLSDGN  406 (514)
T ss_dssp             HHEEECSSSTTSEEEEEEEEEEECTTSC
T ss_pred             eeeEeccccCCCceEEECCEEEECCCCc
Confidence            8872       68999999999999996

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=9.1e-45  Score=352.53  Aligned_cols=348  Identities=18%  Similarity=0.186  Sum_probs=271.9

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhh----cCcc
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILS----CLPR   76 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~----~~~~   76 (415)
                      |+++|+++||+|+++++|++++++++|||+++|++++||+|+++.+++.++++.++++++++++........    ....
T Consensus        67 L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (536)
T d1mdba_          67 FQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQS  146 (536)
T ss_dssp             HHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHH
T ss_pred             HHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhh
Confidence            456799999999999999999999999999999999999999999999999999999999998754322111    0000


Q ss_pred             CCCCccEEEEecCCCchhhHHhhhcCceeecHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHh
Q 014951           77 CCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEV  156 (415)
Q Consensus        77 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~  156 (415)
                      ........+......            ....+++.   .......++..++|+++|+|||||||.||+|++||.++..++
T Consensus       147 ~~~~~~~~~~~~~~~------------~~~~~~~~---~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~  211 (536)
T d1mdba_         147 KLPTLKNIIVAGEAE------------EFLPLEDL---HTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSL  211 (536)
T ss_dssp             HCTTCCCEEEESCCT------------TSEEGGGC---CCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHH
T ss_pred             ccccccceeeeeccc------------cccchhhc---ccCCcCCCccCccchHHhhhcccccccceecccccccccccc
Confidence            112222222221110            01122221   122334456778999999999999999999999999999999


Q ss_pred             hhhhhhhhhccccCCCCCEEEEeCChhhHHHHHH-HH-HhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHHH
Q 014951          157 LSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ET-HCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRI  233 (415)
Q Consensus       157 ~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~-~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l  233 (415)
                      ......+     .+.+.|++++..|++|.+++.. .+ ..+..|.+++..+. ++..++..+++++++.+..+|..+..+
T Consensus       212 ~~~~~~~-----~~~~~d~~l~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (536)
T d1mdba_         212 KRSVEVC-----WLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVW  286 (536)
T ss_dssp             HHHHHHH-----TCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHH
T ss_pred             ccccccc-----ccccccccccccccccccceeeccccccccccccccccCCCCHHHHHHHHhhhccccccccchhhhhh
Confidence            8877776     7889999999999999999864 33 44555677776665 999999999999999999999998887


Q ss_pred             HHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHh
Q 014951          234 YTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVT  313 (415)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~  313 (415)
                      .........                                             ..++++.+++||+++++...+++.+.
T Consensus       287 ~~~~~~~~~---------------------------------------------~~~~~~~~~~gG~~~~~~~~~~~~~~  321 (536)
T d1mdba_         287 MDAASSRRD---------------------------------------------DLSSLQVLQVGGAKFSAEAARRVKAV  321 (536)
T ss_dssp             HHHHHHCCC---------------------------------------------CCTTCCEEEEESSCCCHHHHTTHHHH
T ss_pred             hhhcccccc---------------------------------------------ccCcceeEEEeccccccccccchhhc
Confidence            653222111                                             11489999999999999999999999


Q ss_pred             cCCceEEeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCCchhh
Q 014951          314 SGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLT  393 (415)
Q Consensus       314 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gY~~~~~~~  393 (415)
                      ++......|+.+|.+..+...........+++|.|+++....+++.+++.  +++.++.|||+++|+.++.||+++++.+
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~v~~~~g~--~~~~~~~Gel~v~g~~~~~gY~~~~~~~  399 (536)
T d1mdba_         322 FGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDR--DVKPGETGHLLTRGPYTIRGYYKAEEHN  399 (536)
T ss_dssp             TCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSC--BCCTTCCEEEEEECTTSCSSCTTCHHHH
T ss_pred             cCceeeeccccccccccccccccccccccCCcccCCCCcceEEEEcCCCC--eecccccceeecCCCccccccccccccc
Confidence            99999999999998776655554444456889999876655555525554  4556799999999999999999999988


Q ss_pred             hhhh-cCCceecCceEEEcCCCC
Q 014951          394 EEVI-VDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       394 ~~~~-~~g~~~TGDlg~~d~~G~  415 (415)
                      ...+ .+|||+|||+|++|+||+
T Consensus       400 ~~~~~~~~~~~tGD~~~~~~dG~  422 (536)
T d1mdba_         400 AASFTEDGFYRTGDIVRLTRDGY  422 (536)
T ss_dssp             HHHBCTTSCEEEEEEEEECTTSC
T ss_pred             cccccccCccccCccccccCCCc
Confidence            8887 779999999999999995

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=100.00  E-value=4.2e-41  Score=323.66  Aligned_cols=341  Identities=19%  Similarity=0.252  Sum_probs=261.5

Q ss_pred             CccCCCCCCCeEEEEcCCcHhHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 014951            1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY   80 (415)
Q Consensus         1 L~~~Gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~   80 (415)
                      |++.|+++||+|+++++|++++++++|||+++|++++||+|.++++++.+++++++++++|++............   ..
T Consensus        46 L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~~~~~~~---~~  122 (503)
T d3cw9a1          46 LHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQS---GS  122 (503)
T ss_dssp             HHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEESSCHHHHHHHHHT---TC
T ss_pred             HHHcCcCCCCEEEEEeCCCHHHHHHHHHHHHhCcEEEEeCCCCCHHHHHHHHHhcCCcEEEeecchHHHHHHhhh---cc
Confidence            467899999999999999999999999999999999999999999999999999999999998764322111111   12


Q ss_pred             ccEEEEecCCCchhhHHhhhcCceeecHHHHHhcC-----CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHH
Q 014951           81 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLG-----TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAE  155 (415)
Q Consensus        81 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~  155 (415)
                      ...++.+.                     ++....     ..........++++++++|||||||.||+|.++|.++...
T Consensus       123 ~~~~i~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~  181 (503)
T d3cw9a1         123 GARIIFLG---------------------DLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESR  181 (503)
T ss_dssp             CCEEEEHH---------------------HHEETTEECCCSCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHH
T ss_pred             ccccccch---------------------hhhhhhcccccCCccccccchhhhhhhhcccccccccccccccccchhhhh
Confidence            22333322                     221111     1223334567899999999999999999999999999988


Q ss_pred             hhhhhhhhhhccccCCCCCEEEEeCChhhHHHHHH-HHHhhhcCcEEEEeCC-CHHHHHHHHHhhCCeEEEeCcHHHHHH
Q 014951          156 VLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRI  233 (415)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l  233 (415)
                      .......+   .......++++.++|++|..+... .+.+...++.+++.+. ++..+...+.+++++++..+|..+..+
T Consensus       182 ~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  258 (503)
T d3cw9a1         182 VLFMSTQV---GLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDAL  258 (503)
T ss_dssp             HHHHHHTS---CCCSSTTCEEEECSCTTSHHHHHTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHH
T ss_pred             hhhccccc---cccccccccccccCccccccccccccccccccccccccccccChHHhhhhhhhceeecccccccccccc
Confidence            87765443   124567789999999998888775 5566666777766665 999999999999999999999998887


Q ss_pred             HHHHHHhhhcCChhhHHHHHHHHHhhhhccccCCCCCCccchhhHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHh
Q 014951          234 YTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVT  313 (415)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~v~~~G~~~~~~~~~~~~~~  313 (415)
                      ...........                                           ..++||.+++||++++++...++.+.
T Consensus       259 ~~~~~~~~~~~-------------------------------------------~~~~Lr~i~~gG~~~~~~~~~~~~~~  295 (503)
T d3cw9a1         259 AAAAAHAGSSL-------------------------------------------KLDSLRHVTFAGATMPDAVLETVHQH  295 (503)
T ss_dssp             HHHHHHTCTTC-------------------------------------------CCTTCCEEEECSSCCCHHHHHHHHHH
T ss_pred             ccccccccccc-------------------------------------------cccceEEEEecccccccccccccccc
Confidence            65433222111                                           11489999999999999999999999


Q ss_pred             cCCceEEeeccCCCCceeeeecCCcccccCcccccccCeEEEEeecCCCCCCCCCCCCCCeEEEecC-CccccccCCchh
Q 014951          314 SGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGN-TLFSGYYKRPDL  392 (415)
Q Consensus       314 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~~~~~~~Gel~v~~~-~~~~gY~~~~~~  392 (415)
                      ++..+.+.||++|++..+.......... .+.+.+.+.....+.+ ..+  ..+..|+.|++.+.+. ....+|+++++.
T Consensus       296 ~~~~~~~~yg~~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~--~~~~~g~~g~~~~~~~~~~~~~~~~~~~~  371 (503)
T d3cw9a1         296 LPGEKVNIYGTTEAMNSLYMRQPKTGTE-MAPGFFSEVRIVRIGG-GVD--EIVANGEEGELIVAASDSAFVGYLNQPQA  371 (503)
T ss_dssp             CCSEEEEEEEETTTEEEEEEESCSSSSE-EBCCTTCCEEEECTTS-CTT--CBCCTTCCEEEEEECCTTSCCCBTTCHHH
T ss_pred             ccccccccccccccceeeeecccccccc-ccccccccceeeeeec-ccC--cccCCCccccccccccccccccccCChhh
Confidence            9999999999999988776665544433 4444444444444444 344  3445668998888764 667788999999


Q ss_pred             hhhhhcCCceecCceEEEcCCCC
Q 014951          393 TEEVIVDGWFHTGDIGEWQPMEL  415 (415)
Q Consensus       393 ~~~~~~~g~~~TGDlg~~d~~G~  415 (415)
                      +.+.|.+|||+|||+|++|+||+
T Consensus       372 t~~~~~~g~~~TgD~g~~~~dG~  394 (503)
T d3cw9a1         372 TAEKLQDGWYRTSDVAVWTPEGT  394 (503)
T ss_dssp             HHHHEETTEEEEEEEEEECTTSC
T ss_pred             hHHHhcCCceecccccccccCCe
Confidence            99999999999999999999995

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=83.34  E-value=1.6  Score=39.13  Aligned_cols=90  Identities=9%  Similarity=-0.000  Sum_probs=71.1

Q ss_pred             EEeecHHHHHHhhhhhhhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEeCC--CHHHHHHHHHhhCCeE
Q 014951          145 VVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTM  222 (415)
Q Consensus       145 v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~~~--~~~~~~~~i~~~~~t~  222 (415)
                      ..+|+..+...+..+...+.  ..++.++|++..+++-+. -....+++++..|+..+....  +.+++...++..+++.
T Consensus        46 ~~lTy~el~~~~~~lA~~L~--~~Gi~~Gd~Vai~~~ns~-e~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~  122 (541)
T d1lcia_          46 VNITYAEYFEMSVRLAEAMK--RYGLNTNHRIVVCSENSL-QFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTV  122 (541)
T ss_dssp             CEEEHHHHHHHHHHHHHHHH--HHTCCTTCEEEEECSSCS-STHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSE
T ss_pred             eEeeHHHHHHHHHHHHHHHH--HcCcCCCCEEEEEeCCCH-HHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceE
Confidence            46899999999988877653  236789999998887653 224456788889998888865  8899999999999999


Q ss_pred             EEeCcHHHHHHHHHH
Q 014951          223 FSGVPRVYDRIYTGI  237 (415)
Q Consensus       223 ~~~~P~~~~~l~~~~  237 (415)
                      ++.....+..+.+..
T Consensus       123 vi~~~~~~~~~~~~~  137 (541)
T d1lcia_         123 VFVSKKGLQKILNVQ  137 (541)
T ss_dssp             EEECGGGHHHHHHHH
T ss_pred             Eeeeccccccchhcc
Confidence            999998887765533

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=80.31  E-value=8.9  Score=33.63  Aligned_cols=97  Identities=9%  Similarity=0.022  Sum_probs=75.0

Q ss_pred             CCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhhhhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEe
Q 014951          125 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW  204 (415)
Q Consensus       125 ~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~  204 (415)
                      .|+.+|++.-         .-.+|...+...+..+...+.  ..++.++|++...++-...+ ....++++..|+..+.+
T Consensus        36 ~Pd~~Al~~~---------~~~~Ty~eL~~~v~~lA~~L~--~~Gv~~gd~Vai~~~n~~~~-v~~~la~~~~G~v~v~l  103 (514)
T d1amua_          36 RPNNVAIVCE---------NEQLTYHELNVKANQLARIFI--EKGIGKDTLVGIMMEKSIDL-FIGILAVLKAGGAYVPI  103 (514)
T ss_dssp             CTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHH--HTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEC
T ss_pred             CCCCeEEEEC---------CeeEcHHHHHHHHHHHHHHHH--HcCcCCcCEEEEEeCCCHHH-HHHHHHHHHhCcEEEEe
Confidence            4677887631         136899999988888776543  23778999999988876532 44577889999999888


Q ss_pred             CC--CHHHHHHHHHhhCCeEEEeCcHHHHHH
Q 014951          205 RG--DVRYLMEDIQELKPTMFSGVPRVYDRI  233 (415)
Q Consensus       205 ~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l  233 (415)
                      ..  .++++...++..++..+++.+.....+
T Consensus       104 ~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~  134 (514)
T d1amua_         104 DIEYPKERIQYILDDSQARMLLTQKHLVHLI  134 (514)
T ss_dssp             CTTSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred             CCCCCHHHHHHHHhccCCcEEEEehhhhhhh
Confidence            76  889999999999999999988776654

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=80.14  E-value=4.7  Score=37.09  Aligned_cols=97  Identities=9%  Similarity=0.122  Sum_probs=73.0

Q ss_pred             CCCCeEEEEecCCCCCCCceEEeecHHHHHHhhhhhhhhhhccccCCCCCEEEEeCChhhHHHHHHHHHhhhcCcEEEEe
Q 014951          125 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW  204 (415)
Q Consensus       125 ~~~~~~~i~~TSGtTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~vv~~  204 (415)
                      .++.+|+|. .+..++.  ...+|.+.+...+..+...+.  ..+..++|++..++|-..- ....+++++..|+..+.+
T Consensus        85 ~~d~~Ali~-~~~~~~~--~~~~TY~eL~~~v~~~A~~L~--~~Gv~~Gd~V~i~~~n~~e-~iv~~lA~~~~Gav~v~l  158 (643)
T d1pg4a_          85 NGDRTAIIW-EGDDTSQ--SKHISYRELHRDVCRFANTLL--DLGIKKGDVVAIYMPMVPE-AAVAMLACARIGAVHSVI  158 (643)
T ss_dssp             HTTSEEEEE-ECSSTTC--EEEEEHHHHHHHHHHHHHHHH--HHTCCTTCEEEEECCSSHH-HHHHHHHHHHHTCEEEEC
T ss_pred             CCCCEEEEE-EecCCCC--ceEEeHHHHHHHHHHHHHHHH--HcCCCCCCEEEEecccchH-HHHHHHHHHHhCeEEEec
Confidence            356777654 4333333  336899999998888877653  2378899999999987643 344578889999998887


Q ss_pred             CC--CHHHHHHHHHhhCCeEEEeCc
Q 014951          205 RG--DVRYLMEDIQELKPTMFSGVP  227 (415)
Q Consensus       205 ~~--~~~~~~~~i~~~~~t~~~~~P  227 (415)
                      ..  .++.+...+++.++..++...
T Consensus       159 ~~~~~~~~l~~~l~~~~~~~li~~~  183 (643)
T d1pg4a_         159 FGGFSPEAVAGCIIDSSSRLVITAD  183 (643)
T ss_dssp             CTTSCHHHHHHHHHHHTCSEEEEES
T ss_pred             CCCCCHHHHHHHHHhcCCCEEEEcc
Confidence            65  899999999999999988654