Citrus Sinensis ID: 014974

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-----
MAASAFPLQGSSNENLSQLIRHSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKVVDFYNSSPQVEFVMRAPKSSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIYKVQRDRGEISPLSVSIVKPGTFDRLLQVAIEKGAPASQYKPPKIVRNREIVEFMEGCSLVTVRLDSLDG
ccccccccccccccccccccccccHHHHHccccHHHHHHHHHHHcccccccccEEEcccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccHHHHHHHHHHHccccccccccccccccEEEEEEEcccHHHHHHHHHHHcccccccccccccccEEEEEEccccccccccEEEEccccEEEEEEEcccccccccccEEEEccccccccEEEEEEEEcccccccccccEEEEEEEEccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHcccEEEEEEEEccccccccEEEEEEEEEccccccccHHHHHHHHHHHHHHHHcccHHHHHccccccccEEEEccccHHHHHHHHHHHcccccccccccEEcccHHHHHHHHccccEEEEcccccc
ccccccccHHHccccccccccccccccEEEcccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHcccccEEEEEEEcccHHHHHHHHHHHcccccEEcHcHcccccEEEEEcccccccccEEEEEcccccEEEEEEcccccccccccccEEEEEEEEccEEEEEEEEcccEEEEEcccEEEEEcccccccEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHcccEEEEEEEEcccccccccEEEEEEEEcccccccccHHHHHHHHHHHHHHccHHHHHcccccccccEEEEEEcccHHHHHHHHHHHccccccccccccEcccHHHHHHHHHccHHHcccccccc
maasafplqgssnenLSQLirhssprevivgsnFQHQMYCHLLcglrnyefidgifspyaiGLIGAFSFFESKWEQLCDdlengypclditevAMRDSVIevlggpqpdlsKRIRsicgesnwsgifsklwpnvryikCVTTGSMSQYCSKIKyyagevpvlggdyfasecyvginldiaqppqttrfvmlptaayfeflpfdmekneavgeetvdfsgvEIGKMYEVVVTTYRGFYRYRLGDIVKVVDFynsspqvefvmrapkssfeiiSERDLMSAMESFQMMLRNVMAVEIVEFAgytnlesspkKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIYKvqrdrgeisplsvsivkpgtFDRLLQVAIEkgapasqykppkivrnREIVEFMEGCSLVTVRLDSLDG
maasafplqgssneNLSQLIRHSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCDDLENGYPCLDITEVAMRDSVIEVlggpqpdlskrIRSICGEsnwsgifsklwpNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGeetvdfsgveigKMYEVVVTTYRGFYRYRLGDIVKVVDFYNSSpqvefvmrapkSSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGytnlesspkKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIykvqrdrgeisplsvsivkpgTFDRLLQVAIEkgapasqykppkiVRNREIVEfmegcslvtvrldsldg
MAASAFPLQGSSNENLSQLIRHSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKVVDFYNSSPQVEFVMRAPKSSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIYKVQRDRGEISPLSVSIVKPGTFDRLLQVAIEKGAPASQYKPPKIVRNREIVEFMEGCSLVTVRLDSLDG
**************************EVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKVVDFYNSSPQVEFVMRAPKSSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIYKVQRDRGEISPLSVSIVKPGTFDRLLQVAIEKGAPASQYKPPKIVRNREIVEFMEGCSLVTVRL*****
***SAF**********SQLIRHSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKVVDFYNSSPQVEFVMRAPKSSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIYKVQRDRGEISPLSVSIVKPGTFDRLLQ*A***********PPKIVRNREIVEFMEGCSLVTVRL*****
***********SNENLSQLIRHSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKVVDFYNSSPQVEFVMRAPKSSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIYKVQRDRGEISPLSVSIVKPGTFDRLLQVAIEKGAPASQYKPPKIVRNREIVEFMEGCSLVTVRLDSLDG
*AASAFPLQGSSNENLSQLIRHSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKVVDFYNSSPQVEFVMRAPKSSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIYKVQRDRGEISPLSVSIVKPGTFDRLLQVAIEKGAPASQYKPPKIVRNREIVEFMEGCSLVTVRL*****
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MAASAFPLQGSSNENLSQLIRHSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKVVDFYNSSPQVEFVMRAPKSSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIYKVQRDRGEISPLSVSIVKPGTFDRLLQVAIEKGAPASQYKPPKIVRNREIVEFMEGCSLVTVRLDSLDG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query415 2.2.26 [Sep-21-2011]
Q60EY1488 Probable indole-3-acetic no no 0.930 0.790 0.490 1e-107
Q6I581581 Probable indole-3-acetic no no 0.881 0.629 0.360 3e-69
Q9FZ87609 Indole-3-acetic acid-amid no no 0.959 0.653 0.324 6e-69
Q9LYU4575 4-substituted benzoates-g no no 0.906 0.653 0.346 3e-68
Q0D4Z6605 Probable indole-3-acetic no no 0.908 0.623 0.348 3e-67
A3BLS0605 Probable indole-3-acetic N/A no 0.908 0.623 0.348 3e-67
O22190595 Indole-3-acetic acid-amid no no 0.903 0.630 0.349 9e-67
Q8LQM5610 Probable indole-3-acetic no no 0.906 0.616 0.360 3e-66
Q654M1620 Probable indole-3-acetic no no 0.906 0.606 0.347 4e-65
Q9LQ68597 Indole-3-acetic acid-amid no no 0.910 0.633 0.315 7e-64
>sp|Q60EY1|GH36_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.6 OS=Oryza sativa subsp. japonica GN=GH3.6 PE=2 SV=2 Back     alignment and function desciption
 Score =  388 bits (997), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 198/404 (49%), Positives = 276/404 (68%), Gaps = 18/404 (4%)

Query: 1   MAASAFPLQGSSNENLSQLIRHS-SPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPY 59
           MAA+A+ ++ S     S ++    SP EVI+G++ Q QMYCHLLCGLR ++ +D I +PY
Sbjct: 1   MAATAWGIRSSGIRGASPVMSACVSPAEVILGADHQQQMYCHLLCGLRRWDAVDCIRAPY 60

Query: 60  AIGLIGAFSFFESKWEQLCDDLENGYPCLD-ITEVAMRDSVIE-VLGGPQPDLSKRIRSI 117
           A  L  A    +SKW QLCDDLE G  C D +T+ AMR +V + VL GP P+L+ R+R I
Sbjct: 61  AAALARALRLLQSKWRQLCDDLECGTVCADVVTDAAMRGAVQDGVLAGPCPELAGRVRRI 120

Query: 118 CGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGE-VPVLGGDYFASECYVGIN 176
           C   +W G+  +LWP+ RYI CVTTG+M QY   IK++AGE +PVLG DY ASEC +GIN
Sbjct: 121 CERDDWRGVLRQLWPDARYISCVTTGTMEQYFPAIKHFAGEALPVLGTDYLASECAIGIN 180

Query: 177 LDIAQPPQTTRFVMLPTAAYFEFLPFDME--KNEAVGEETVDFSGVEIGKMYEVVVTTYR 234
           L+   PP+ T +V+LP AAYFEF+PFDM+     A   E VD +GVE GK YE+V TT+R
Sbjct: 181 LERTSPPEETTYVLLPRAAYFEFIPFDMDAAGRGAAAAEPVDIAGVEAGKTYELVATTFR 240

Query: 235 GFYRYRLGDIVKVVDFYNSSPQVEFVMRA--PKSSFEIISERDLMSAMESFQMMLRNVMA 292
           G YRY++GD+VK+  F++SSP+++FV RA  P+   E+++ERD+M+AM++FQ+ML++   
Sbjct: 241 GLYRYKVGDVVKIAGFHHSSPRLQFVTRAPPPQEHGEVLTERDVMAAMDTFQLMLKD--G 298

Query: 293 VEIVEFAGY----TNLESSPKKLMIFVEIREGCTKLRD---SVAILRRCCSSLEDAFGSI 345
            E++EFA +       +   +   I VE+  G +KL D   S A LRRC + LE   G  
Sbjct: 299 GEVIEFAAFIIDGDGGQRRRRCATIAVEVSNG-SKLLDHERSAAFLRRCTAPLEGCLGGA 357

Query: 346 YKVQRDRGEISPLSVSIVKPGTFDRLLQVAIEKGAPASQYKPPK 389
           Y++ R  G+++PL V++V+PGTFDRL + AI  GAPA+QYKPP+
Sbjct: 358 YRLSRATGDVAPLEVAVVRPGTFDRLAEAAIRGGAPANQYKPPR 401
May catalyze the synthesis of indole-3-acetic acid (IAA)-amino acid conjugates, providing a mechanism for the plant to cope with the presence of excess auxin.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q6I581|GH35_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.5 OS=Oryza sativa subsp. japonica GN=GH3.5 PE=2 SV=1 Back     alignment and function description
>sp|Q9FZ87|GH317_ARATH Indole-3-acetic acid-amido synthetase GH3.17 OS=Arabidopsis thaliana GN=GH3.17 PE=1 SV=1 Back     alignment and function description
>sp|Q9LYU4|GH312_ARATH 4-substituted benzoates-glutamate ligase GH3.12 OS=Arabidopsis thaliana GN=GH3.12 PE=1 SV=1 Back     alignment and function description
>sp|Q0D4Z6|GH38_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.8 OS=Oryza sativa subsp. japonica GN=GH3.8 PE=2 SV=1 Back     alignment and function description
>sp|A3BLS0|GH38_ORYSI Probable indole-3-acetic acid-amido synthetase GH3.8 OS=Oryza sativa subsp. indica GN=GH3.8 PE=2 SV=2 Back     alignment and function description
>sp|O22190|GH33_ARATH Indole-3-acetic acid-amido synthetase GH3.3 OS=Arabidopsis thaliana GN=GH3.3 PE=1 SV=1 Back     alignment and function description
>sp|Q8LQM5|GH31_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Oryza sativa subsp. japonica GN=GH3.1 PE=2 SV=1 Back     alignment and function description
>sp|Q654M1|GH37_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.7 OS=Oryza sativa subsp. japonica GN=GH3.7 PE=2 SV=2 Back     alignment and function description
>sp|Q9LQ68|GH34_ARATH Indole-3-acetic acid-amido synthetase GH3.4 OS=Arabidopsis thaliana GN=GH3.4 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query415
224131296 578 GH3 family protein [Populus trichocarpa] 0.990 0.711 0.672 1e-168
225436867 578 PREDICTED: probable indole-3-acetic acid 0.995 0.714 0.658 1e-161
356504890 576 PREDICTED: probable indole-3-acetic acid 0.987 0.711 0.624 1e-156
255638272 576 unknown [Glycine max] 0.987 0.711 0.624 1e-156
218196075 638 hypothetical protein OsI_18426 [Oryza sa 0.959 0.623 0.487 1e-110
115462041429 Os05g0143800 [Oryza sativa Japonica Grou 0.959 0.927 0.487 1e-109
82592860488 RecName: Full=Probable indole-3-acetic a 0.930 0.790 0.490 1e-105
53749339486 unknown protein [Oryza sativa Japonica G 0.925 0.790 0.490 1e-104
413948630 623 hypothetical protein ZEAMMB73_485956 [Ze 0.869 0.579 0.379 2e-69
413948631 592 hypothetical protein ZEAMMB73_485956 [Ze 0.869 0.609 0.379 3e-69
>gi|224131296|ref|XP_002321049.1| GH3 family protein [Populus trichocarpa] gi|222861822|gb|EEE99364.1| GH3 family protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  598 bits (1542), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 283/421 (67%), Positives = 343/421 (81%), Gaps = 10/421 (2%)

Query: 1   MAASAFPLQGS-SNENLSQLIRHSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPY 59
           MAAS +PLQG+ S  N SQ +   SPREV+ GSN + QMYCHLLC LR+++ IDGI + Y
Sbjct: 162 MAASTYPLQGNKSRSNWSQTLSCISPREVVFGSNIKQQMYCHLLCALRSFDIIDGIRAAY 221

Query: 60  AIGLIGAFSFFESKWEQLCDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICG 119
           A GLI AFS  ESKWE+LCDDLE+G+P L+I + AM++SV+E LGGPQ DLS+RIR IC 
Sbjct: 222 AAGLIRAFSLLESKWEKLCDDLESGFPSLEIGDAAMKESVVEFLGGPQVDLSRRIREICA 281

Query: 120 ESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDI 179
           ESNW GI SKLWPNVRY+K VTTGSM QY SK+KYYAG+V +LGGDYFASEC +GINLDI
Sbjct: 282 ESNWGGILSKLWPNVRYVKSVTTGSMKQYYSKLKYYAGDVMILGGDYFASECCLGINLDI 341

Query: 180 AQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYRGFYRY 239
            QPP++TRFVMLPT AYFEFLPFD+ ++  VGEETVDFSGV++GKMYEV VTTYRG YRY
Sbjct: 342 QQPPESTRFVMLPTTAYFEFLPFDLNESSVVGEETVDFSGVKVGKMYEVAVTTYRGLYRY 401

Query: 240 RLGDIVKVVDFYNSSPQVEFVMRAPKSSFEIISERDLMSAMESFQMMLRNVMAVEIVEFA 299
           RLGDIV+VV F+NSSP VEFVMRAPK+ +EII+E+DLMSAMESFQ    + MA E+VEFA
Sbjct: 402 RLGDIVRVVGFHNSSPLVEFVMRAPKTGYEIITEKDLMSAMESFQ----HSMAAEVVEFA 457

Query: 300 GYTNLESSPKKLMIFVEIREGCT-----KLRDSVAILRRCCSSLEDAFGSIYKVQRDRGE 354
            +++ E SPK+L +F+E REGC      KL+ SV  L+RCCSSLE+  G IYKVQ+DRGE
Sbjct: 458 SFSDFELSPKRLKVFIEFREGCDFLQEEKLQGSVEALQRCCSSLENGLGEIYKVQKDRGE 517

Query: 355 ISPLSVSIVKPGTFDRLLQVAIEKGAPASQYKPPKIVRNREIVEFMEGCSLVTVRLDSLD 414
           I PL VS+V+ G+FD +LQ+AI+ GAPA QYKPPKI+RNREIV+FME  +++T+ LDS  
Sbjct: 518 IGPLLVSVVRSGSFDGILQMAIKNGAPAGQYKPPKIIRNREIVDFMEESAVLTISLDSFH 577

Query: 415 G 415
           G
Sbjct: 578 G 578

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225436867|ref|XP_002271002.1| PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.6 [Vitis vinifera] gi|296086675|emb|CBI32310.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356504890|ref|XP_003521227.1| PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.6-like [Glycine max] Back     alignment and taxonomy information
>gi|255638272|gb|ACU19449.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|218196075|gb|EEC78502.1| hypothetical protein OsI_18426 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|115462041|ref|NP_001054620.1| Os05g0143800 [Oryza sativa Japonica Group] gi|113578171|dbj|BAF16534.1| Os05g0143800 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|82592860|sp|Q60EY1.2|GH36_ORYSJ RecName: Full=Probable indole-3-acetic acid-amido synthetase GH3.6; AltName: Full=Auxin-responsive GH3-like protein 6; Short=OsGH3-6 Back     alignment and taxonomy information
>gi|53749339|gb|AAU90198.1| unknown protein [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|413948630|gb|AFW81279.1| hypothetical protein ZEAMMB73_485956 [Zea mays] Back     alignment and taxonomy information
>gi|413948631|gb|AFW81280.1| hypothetical protein ZEAMMB73_485956 [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query415
UNIPROTKB|Q60EY1488 GH3.6 "Probable indole-3-aceti 0.930 0.790 0.490 1e-100
UNIPROTKB|Q6I581581 GH3.5 "Probable indole-3-aceti 0.891 0.636 0.361 1.2e-65
TAIR|locus:2058588595 GH3.3 [Arabidopsis thaliana (t 0.901 0.628 0.355 5.2e-65
TAIR|locus:2008134573 AT1G48660 "AT1G48660" [Arabido 0.901 0.652 0.335 1.8e-64
UNIPROTKB|Q8LQM5610 GH3.1 "Probable indole-3-aceti 0.903 0.614 0.361 8.8e-63
TAIR|locus:2201170578 AT1G23160 [Arabidopsis thalian 0.901 0.647 0.329 8.8e-63
TAIR|locus:2125571591 DFL2 "DWARF IN LIGHT 2" [Arabi 0.927 0.651 0.329 2.3e-62
TAIR|locus:2153092581 AT5G51470 "AT5G51470" [Arabido 0.893 0.638 0.323 6.2e-62
TAIR|locus:2202832597 GH3.4 [Arabidopsis thaliana (t 0.906 0.629 0.326 6.2e-62
UNIPROTKB|P0C0M2614 GH3.2 "Probable indole-3-aceti 0.910 0.615 0.318 2.4e-60
UNIPROTKB|Q60EY1 GH3.6 "Probable indole-3-acetic acid-amido synthetase GH3.6" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
 Score = 999 (356.7 bits), Expect = 1.0e-100, P = 1.0e-100
 Identities = 198/404 (49%), Positives = 278/404 (68%)

Query:     1 MAASAFPLQGSSNENLSQLIRHS-SPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPY 59
             MAA+A+ ++ S     S ++    SP EVI+G++ Q QMYCHLLCGLR ++ +D I +PY
Sbjct:     1 MAATAWGIRSSGIRGASPVMSACVSPAEVILGADHQQQMYCHLLCGLRRWDAVDCIRAPY 60

Query:    60 AIGLIGAFSFFESKWEQLCDDLENGYPCLDI-TEVAMRDSVIE-VLGGPQPDLSKRIRSI 117
             A  L  A    +SKW QLCDDLE G  C D+ T+ AMR +V + VL GP P+L+ R+R I
Sbjct:    61 AAALARALRLLQSKWRQLCDDLECGTVCADVVTDAAMRGAVQDGVLAGPCPELAGRVRRI 120

Query:   118 CGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGE-VPVLGGDYFASECYVGIN 176
             C   +W G+  +LWP+ RYI CVTTG+M QY   IK++AGE +PVLG DY ASEC +GIN
Sbjct:   121 CERDDWRGVLRQLWPDARYISCVTTGTMEQYFPAIKHFAGEALPVLGTDYLASECAIGIN 180

Query:   177 LDIAQPPQTTRFVMLPTAAYFEFLPFDMEK--NEAVGEETVDFSGVEIGKMYEVVVTTYR 234
             L+   PP+ T +V+LP AAYFEF+PFDM+     A   E VD +GVE GK YE+V TT+R
Sbjct:   181 LERTSPPEETTYVLLPRAAYFEFIPFDMDAAGRGAAAAEPVDIAGVEAGKTYELVATTFR 240

Query:   235 GFYRYRLGDIVKVVDFYNSSPQVEFVMRAP--KSSFEIISERDLMSAMESFQMMLRNVMA 292
             G YRY++GD+VK+  F++SSP+++FV RAP  +   E+++ERD+M+AM++FQ+ML++   
Sbjct:   241 GLYRYKVGDVVKIAGFHHSSPRLQFVTRAPPPQEHGEVLTERDVMAAMDTFQLMLKD--G 298

Query:   293 VEIVEFAGYT-NLESSPKK---LMIFVEIREGCTKLRD---SVAILRRCCSSLEDAFGSI 345
              E++EFA +  + +   ++     I VE+  G +KL D   S A LRRC + LE   G  
Sbjct:   299 GEVIEFAAFIIDGDGGQRRRRCATIAVEVSNG-SKLLDHERSAAFLRRCTAPLEGCLGGA 357

Query:   346 YKVQRDRGEISPLSVSIVKPGTFDRLLQVAIEKGAPASQYKPPK 389
             Y++ R  G+++PL V++V+PGTFDRL + AI  GAPA+QYKPP+
Sbjct:   358 YRLSRATGDVAPLEVAVVRPGTFDRLAEAAIRGGAPANQYKPPR 401
GO:0009416 "response to light stimulus" evidence=IC
GO:0009733 "response to auxin stimulus" evidence=IC
UNIPROTKB|Q6I581 GH3.5 "Probable indole-3-acetic acid-amido synthetase GH3.5" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2058588 GH3.3 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008134 AT1G48660 "AT1G48660" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q8LQM5 GH3.1 "Probable indole-3-acetic acid-amido synthetase GH3.1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2201170 AT1G23160 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125571 DFL2 "DWARF IN LIGHT 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153092 AT5G51470 "AT5G51470" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202832 GH3.4 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P0C0M2 GH3.2 "Probable indole-3-acetic acid-amido synthetase GH3.2" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GH3-14
GH3 family protein (578 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query415
PLN02247606 PLN02247, PLN02247, indole-3-acetic acid-amido syn 1e-83
pfam03321513 pfam03321, GH3, GH3 auxin-responsive promoter 7e-83
PLN02620612 PLN02620, PLN02620, indole-3-acetic acid-amido syn 3e-78
PLN02249597 PLN02249, PLN02249, indole-3-acetic acid-amido syn 4e-78
>gnl|CDD|165890 PLN02247, PLN02247, indole-3-acetic acid-amido synthetase Back     alignment and domain information 
 Score =  267 bits (683), Expect = 1e-83
 Identities = 133/403 (33%), Positives = 220/403 (54%), Gaps = 24/403 (5%)

Query: 22  HSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCDDL 81
           ++SP E I+  + +  MYC LLCGL   + +  + + +A   + A  F E  W++LC ++
Sbjct: 183 YTSPDETILCQDSKQSMYCQLLCGLVQRDEVLRVGAVFASAFLRAIKFLEDHWKELCSNI 242

Query: 82  ENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVT 141
             G     IT+ + R++V  +L  P  +L+  I S C   +W GI  +LWP  +YI+ + 
Sbjct: 243 RTGCVSDWITDPSCRNAVSSILSKPNSELADLIESECSGKSWEGIIKRLWPRTKYIEVIV 302

Query: 142 TGSMSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLP 201
           TGSM+QY   +++Y+G +P++   Y +SECY GINL     P    + +LP  AYFEFLP
Sbjct: 303 TGSMAQYIPTLEFYSGGLPLVSTMYASSECYFGINLKPLSDPSDVSYTLLPNMAYFEFLP 362

Query: 202 FDMEKNEAVGE-----------------ETVDFSGVEIGKMYEVVVTTYRGFYRYRLGDI 244
            D    E +                   E VD   V++G  YE+VVTT+ G YRYR+GDI
Sbjct: 363 VDKNNGEVIHFVQCNGTDDDDDALKEDLEIVDLVDVKVGHYYELVVTTFTGLYRYRVGDI 422

Query: 245 VKVVDFYNSSPQVEFVMR---APKSSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGY 301
           + V  FYN++PQ  FV R         +  +E DL+ A+   +++L   +   + E+  Y
Sbjct: 423 LMVTGFYNNAPQFRFVQRRNVVLSIDTDKTNEEDLLKAVTQAKLLLEP-LGFLLTEYTSY 481

Query: 302 TNLESSPKKLMIFVEIR-EGCTKLRD-SVAILRRCCSSLEDAFGSIYKVQRDRGE-ISPL 358
            +  S P   ++F E++  G     +    I+ +CCS++E++  S+Y+  R R + I PL
Sbjct: 482 ADTSSIPGHYVLFWELKTRGSNDPPELDPKIMEQCCSTVEESLDSVYRRCRKRDKSIGPL 541

Query: 359 SVSIVKPGTFDRLLQVAIEKGAPASQYKPPKIVRNREIVEFME 401
            + +VK GTFD L+   + +G+  +QYK P+ +++ E ++ ++
Sbjct: 542 EIRVVKHGTFDALMDFCVSQGSSVNQYKTPRCIKSEEALKILD 584

Length = 606
>gnl|CDD|217492 pfam03321, GH3, GH3 auxin-responsive promoter Back     alignment and domain information
>gnl|CDD|166261 PLN02620, PLN02620, indole-3-acetic acid-amido synthetase Back     alignment and domain information
>gnl|CDD|177891 PLN02249, PLN02249, indole-3-acetic acid-amido synthetase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 415
PLN02620612 indole-3-acetic acid-amido synthetase 100.0
PLN02247606 indole-3-acetic acid-amido synthetase 100.0
PLN02249597 indole-3-acetic acid-amido synthetase 100.0
PF03321528 GH3: GH3 auxin-responsive promoter; InterPro: IPR0 100.0
COG1541438 PaaK Coenzyme F390 synthetase [Coenzyme metabolism 99.64
TIGR03335445 F390_ftsA coenzyme F390 synthetase. This enzyme, c 99.57
TIGR02155422 PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet 99.26
TIGR02304430 aden_form_hyp probable adenylate-forming enzyme. M 99.21
PRK00174637 acetyl-CoA synthetase; Provisional 98.51
PRK06060 705 acyl-CoA synthetase; Validated 98.36
TIGR02188625 Ac_CoA_lig_AcsA acetate--CoA ligase. This model de 98.34
PTZ00237647 acetyl-CoA synthetase; Provisional 98.28
PRK09274552 peptide synthase; Provisional 98.24
PRK04319570 acetyl-CoA synthetase; Provisional 98.22
PRK07514504 malonyl-CoA synthase; Validated 98.21
PRK06334539 long chain fatty acid--[acyl-carrier-protein] liga 98.21
TIGR03205541 pimA dicarboxylate--CoA ligase PimA. PimA, a membe 98.2
PRK06155542 crotonobetaine/carnitine-CoA ligase; Provisional 98.2
PRK06187521 long-chain-fatty-acid--CoA ligase; Validated 98.2
TIGR01734502 D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig 98.19
PRK07529632 AMP-binding domain protein; Validated 98.18
PRK13295547 cyclohexanecarboxylate-CoA ligase; Reviewed 98.16
PLN02574560 4-coumarate--CoA ligase-like 98.13
PRK03584655 acetoacetyl-CoA synthetase; Provisional 98.12
PRK05605573 long-chain-fatty-acid--CoA ligase; Validated 98.1
PRK09088488 acyl-CoA synthetase; Validated 98.09
PRK05677562 long-chain-fatty-acid--CoA ligase; Validated 98.08
PRK07788549 acyl-CoA synthetase; Validated 98.08
PRK07867529 acyl-CoA synthetase; Validated 98.07
PRK06164540 acyl-CoA synthetase; Validated 98.06
PRK07786542 long-chain-fatty-acid--CoA ligase; Validated 98.05
PRK08974560 long-chain-fatty-acid--CoA ligase; Validated 98.03
PRK04813503 D-alanine--poly(phosphoribitol) ligase subunit 1; 98.03
PRK10524629 prpE propionyl-CoA synthetase; Provisional 98.03
PLN02654666 acetate-CoA ligase 98.02
PRK07656513 long-chain-fatty-acid--CoA ligase; Validated 98.0
PRK06145497 acyl-CoA synthetase; Validated 98.0
TIGR02316628 propion_prpE propionate--CoA ligase. This family c 98.0
PRK05852534 acyl-CoA synthetase; Validated 97.99
TIGR01733408 AA-adenyl-dom amino acid adenylation domain. This 97.96
PLN02330546 4-coumarate--CoA ligase-like 1 97.96
PRK12406509 long-chain-fatty-acid--CoA ligase; Provisional 97.95
PRK12583558 acyl-CoA synthetase; Provisional 97.94
PRK05850578 acyl-CoA synthetase; Validated 97.93
PRK07768545 long-chain-fatty-acid--CoA ligase; Validated 97.92
PRK08314546 long-chain-fatty-acid--CoA ligase; Validated 97.91
TIGR03208538 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. 97.9
PRK08316523 acyl-CoA synthetase; Validated 97.89
TIGR01217652 ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym 97.89
TIGR02275527 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot 97.89
PRK13382537 acyl-CoA synthetase; Provisional 97.89
PRK07059557 Long-chain-fatty-acid--CoA ligase; Validated 97.89
PRK06839496 acyl-CoA synthetase; Validated 97.88
PRK13383516 acyl-CoA synthetase; Provisional 97.85
PRK07769631 long-chain-fatty-acid--CoA ligase; Validated 97.84
PRK13391511 acyl-CoA synthetase; Provisional 97.83
PRK12492562 long-chain-fatty-acid--CoA ligase; Provisional 97.82
PRK13390501 acyl-CoA synthetase; Provisional 97.81
PRK08315559 AMP-binding domain protein; Validated 97.8
TIGR02262508 benz_CoA_lig benzoate-CoA ligase family. Character 97.79
PRK07638487 acyl-CoA synthetase; Validated 97.78
PLN02246537 4-coumarate--CoA ligase 97.77
PRK10252 1296 entF enterobactin synthase subunit F; Provisional 97.77
PRK08751560 putative long-chain fatty acyl CoA ligase; Provisi 97.75
PRK086331146 2-acyl-glycerophospho-ethanolamine acyltransferase 97.75
PRK13388540 acyl-CoA synthetase; Provisional 97.74
PRK05851525 long-chain-fatty-acid--[acyl-carrier-protein] liga 97.73
TIGR03098515 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor 97.72
PLN03051499 acyl-activating enzyme; Provisional 97.72
PRK07868994 acyl-CoA synthetase; Validated 97.7
PRK07798533 acyl-CoA synthetase; Validated 97.69
PRK06710563 long-chain-fatty-acid--CoA ligase; Validated 97.69
PLN02860563 o-succinylbenzoate-CoA ligase 97.69
PRK07470528 acyl-CoA synthetase; Validated 97.68
PRK12476612 putative fatty-acid--CoA ligase; Provisional 97.67
PRK12467 3956 peptide synthase; Provisional 97.67
PRK08276502 long-chain-fatty-acid--CoA ligase; Validated 97.64
PLN02387696 long-chain-fatty-acid-CoA ligase family protein 97.62
PRK07787471 acyl-CoA synthetase; Validated 97.61
PRK07445452 O-succinylbenzoic acid--CoA ligase; Reviewed 97.58
PRK09192579 acyl-CoA synthetase; Validated 97.57
PRK07008539 long-chain-fatty-acid--CoA ligase; Validated 97.56
PF00501417 AMP-binding: AMP-binding enzyme; InterPro: IPR0008 97.56
PLN02614666 long-chain acyl-CoA synthetase 97.56
TIGR03443 1389 alpha_am_amid L-aminoadipate-semialdehyde dehydrog 97.53
PRK06188524 acyl-CoA synthetase; Validated 97.52
PLN02736651 long-chain acyl-CoA synthetase 97.52
PRK06178567 acyl-CoA synthetase; Validated 97.52
PRK056914334 peptide synthase; Validated 97.51
PRK08308414 acyl-CoA synthetase; Validated 97.5
COG0318534 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l 97.47
PRK10946536 entE enterobactin synthase subunit E; Provisional 97.46
PRK03640483 O-succinylbenzoic acid--CoA ligase; Provisional 97.46
PRK05620576 long-chain-fatty-acid--CoA ligase; Validated 97.46
KOG1175626 consensus Acyl-CoA synthetase [Lipid transport and 97.41
PRK08008517 caiC putative crotonobetaine/carnitine-CoA ligase; 97.4
PRK12316 5163 peptide synthase; Provisional 97.4
PRK05857540 acyl-CoA synthetase; Validated 97.37
PRK07824358 O-succinylbenzoic acid--CoA ligase; Provisional 97.36
PLN03102579 acyl-activating enzyme; Provisional 97.36
PRK12316 5163 peptide synthase; Provisional 97.36
TIGR01923436 menE O-succinylbenzoate-CoA ligase. This model rep 97.36
PLN02861660 long-chain-fatty-acid-CoA ligase 97.31
PRK08279600 long-chain-acyl-CoA synthetase; Validated 97.29
PRK12467 3956 peptide synthase; Provisional 97.29
KOG1179649 consensus Very long-chain acyl-CoA synthetase/fatt 97.28
PTZ00342746 acyl-CoA synthetase; Provisional 97.27
PRK06018542 putative acyl-CoA synthetase; Provisional 97.27
PRK068141140 acylglycerophosphoethanolamine acyltransferase; Pr 97.26
PRK05691 4334 peptide synthase; Validated 97.25
PRK08043718 bifunctional acyl-[acyl carrier protein] synthetas 97.24
PLN03052728 acetate--CoA ligase; Provisional 97.16
PRK06087547 short chain acyl-CoA synthetase; Reviewed 97.12
COG1022613 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) 97.11
KOG1176537 consensus Acyl-CoA synthetase [Lipid transport and 97.04
PLN02430660 long-chain-fatty-acid-CoA ligase 97.02
PTZ00216700 acyl-CoA synthetase; Provisional 96.85
PF1453596 AMP-binding_C_2: AMP-binding enzyme C-terminal dom 96.84
PRK08180614 feruloyl-CoA synthase; Reviewed 96.76
PRK08162545 acyl-CoA synthetase; Validated 96.75
PRK12582624 acyl-CoA synthetase; Provisional 96.73
COG0365528 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l 96.64
PLN02479567 acetate-CoA ligase 96.3
PRK09029458 O-succinylbenzoic acid--CoA ligase; Provisional 95.94
COG1021542 EntE Peptide arylation enzymes [Secondary metaboli 95.79
TIGR02372386 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv 95.73
KOG1256691 consensus Long-chain acyl-CoA synthetases (AMP-for 94.03
KOG1177596 consensus Long chain fatty acid acyl-CoA ligase [L 93.75
KOG1180678 consensus Acyl-CoA synthetase [Lipid transport and 91.35
COG1020642 EntF Non-ribosomal peptide synthetase modules and 87.38
>PLN02620 indole-3-acetic acid-amido synthetase Back     alignment and domain information 
Probab=100.00  E-value=6.5e-103  Score=822.31  Aligned_cols=408  Identities=32%  Similarity=0.634  Sum_probs=374.3

Q ss_pred             CCccCCCCCCCCCC--ccccccccCccccccCCChHHHHHHHHHhccccCCCcceEeCCCHHHHHHHHHHHHHHHHHHHH
Q 014974            2 AASAFPLQGSSNEN--LSQLIRHSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCD   79 (415)
Q Consensus         2 ~~~~~~~~~~~~~~--~~~~~~~~~P~ev~~~~d~~~~~Y~~Ll~aL~~~~~v~~i~~~f~~~l~~~~~~le~~w~~l~~   79 (415)
                      ++|+...+++...+  ....+.||+|.++++++|..++|||||||||.++++|..++++|+++|++++++||++|++||+
T Consensus       173 ~~st~~y~s~~f~~~~~~~~~~~~sP~ev~~~~D~~qs~Y~~LLcgL~~~~~v~~v~svfa~~ll~a~~~Le~~w~~L~~  252 (612)
T PLN02620        173 PVLTSYYKSSHFKDRPYDPYTNYTSPNETILCPDSYQSMYSQMLCGLCQHKEVLRVGAVFASGFIRAIRFLEKHWTLLCR  252 (612)
T ss_pred             cccchhhhhhhhhhcccccccceeCcHHhccCCCHHHHHHHHHHHHhhcchhhceEEeechHHHHHHHHHHHHHHHHHHH
Confidence            35556556555322  2345689999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCCChHHHHHHHHHhhCCCCHHHHHHHHHHhcCCCCCCcccccCCCCceEEEEecCChHHHHHHHHHhhCCC
Q 014974           80 DLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGEV  159 (415)
Q Consensus        80 dI~~Gt~~~~i~~~~~r~~l~~~lg~p~p~~A~~L~~~~~~~g~~g~~~~lWP~L~~i~~~~~G~~~~y~~~l~~~~g~v  159 (415)
                      ||++|+++++++++++|++|++.| +|||++|+.|+++|++.+|+|++++|||||++|+||+||+|++|+++|++|+|++
T Consensus       253 DI~~G~ls~~itd~~~R~av~~~L-~p~pelA~~i~~~c~~~~w~gii~rLWP~lk~I~~~~tGsm~~Y~p~L~~y~ggl  331 (612)
T PLN02620        253 DIRTGTIDSQITDPSVREAVMKIL-KPDPKLADFVEAECRKESWQGIITRLWPNTKYVDVIVTGTMSQYIPTLDYYSNGL  331 (612)
T ss_pred             HHhcCCCCccCCCHHHHHHHHhhc-CCCHHHHHHHHHHhccccccCcHHHhCCCCcEEEEECCCCHHHHHHHHHHHcCCC
Confidence            999999999999999999999999 8999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccccccCceEEEeeCCCCCCCCCceeeecCCceEEEeeeCCcccc------------cccCCceeecCCcccCceEE
Q 014974          160 PVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKN------------EAVGEETVDFSGVEIGKMYE  227 (415)
Q Consensus       160 ~~~~~~y~aSEg~igi~~~~~~~~~~~~~~l~~~~~ffEFIp~~~~~~------------~~~~~~~l~l~ele~G~~Ye  227 (415)
                      |+++.+|+||||+||||++|.|++++..|+|+|+++||||||+++.+.            +.+++++|+++|||+|++||
T Consensus       332 pl~~~~Y~ASE~~~ginl~P~~~p~~~sy~L~p~~~yFEFip~~~~~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~Ye  411 (612)
T PLN02620        332 PLVCTMYASSECYFGVNLNPLCKPSEVSYTLIPTMAYFEFLPVHRNNGVTNSISLPKSLNEKEQQELVDLVDVKLGQEYE  411 (612)
T ss_pred             ccccccccccceEEEeccCCCCCcccceeeecCCcEEEEEeeccCcccccccccccccccccccCccccHHHccCCCeEE
Confidence            999999999999999999999999999999999999999999875310            13356789999999999999


Q ss_pred             EEeccccceeeeeeCCEEEEeeecCCCcEEEEEeeCCC---cceeecCHHHHHHHHHHHHHHhhhccCceEEEEEEeecC
Q 014974          228 VVVTTYRGFYRYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNL  304 (415)
Q Consensus       228 lVvTt~~GLyRYriGDvV~V~gf~~~~P~i~F~gR~~~---l~gEkl~e~~v~~av~~a~~~l~~~~g~~l~~f~~~~d~  304 (415)
                      |||||++||||||+||||+|+||||++|+|+|++|+++   |+|||++|++++.||++|...|.. .+++|+||++++|.
T Consensus       412 lvvTt~~GLyRYrlGDvv~V~Gf~n~~P~~~Fv~R~~~~lsi~gEK~tE~~l~~Av~~a~~~l~~-~~~~l~dyts~~d~  490 (612)
T PLN02620        412 LVVTTYAGLYRYRVGDVLRVAGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQNAVKNAVNHLVP-FDASLTEYTSYADT  490 (612)
T ss_pred             EEEEecCceEEEecCCEEEEeeecCCCceEEEEeecCceeecccccCCHHHHHHHHHHHHHhhcc-cCceeeeEEecccc
Confidence            99999999999999999999999999999999999998   999999999999999999987755 68999999999998


Q ss_pred             CCCCceEEEEEEeecCccccCCCHHHHHHHHHHHHHHhChhHHHhhhcC-CCCCeEEEEcCCChHHHHHHHHHhcCCCCC
Q 014974          305 ESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIYKVQRDRG-EISPLSVSIVKPGTFDRLLQVAIEKGAPAS  383 (415)
Q Consensus       305 ~~~~~~Y~l~vE~~~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~g-~l~p~~v~~v~~Gtf~~~~~~~~~~G~~~~  383 (415)
                      ++.||||++|||+..... ...+++.+++||..||++||.+|+.+|..+ +|+|++|++|++|||+++|++++++|++.+
T Consensus       491 ~~~PghYvl~~El~~~~~-~~~~~~~l~~cc~~lE~~Ln~~Yr~~R~~~~sIgPLeirvv~~GtF~~l~~~~~~~G~s~~  569 (612)
T PLN02620        491 STIPGHYVLFWELCLNGS-TPIPPSVFEDCCLTIEESLNSVYRQGRVSDKSIGPLEIKIVEPGTFDKLMDYAISLGASIN  569 (612)
T ss_pred             CCCCCceEEEEEEecCCC-CCCCHHHHHHHHHHHHHHhCHHHHHHHhcCCcCCCcEEEEeCCChHHHHHHHHHHcCCccc
Confidence            889999999999841110 124677899999999999999999999987 599999999999999999999999999999


Q ss_pred             CCCCCcccCCHHHHHHHhccceEEEeccC
Q 014974          384 QYKPPKIVRNREIVEFMEGCSLVTVRLDS  412 (415)
Q Consensus       384 Q~K~Pr~~~~~~~~~~L~~~~~~~~~~~~  412 (415)
                      |||+|||+++.+++++|+++|++++--..
T Consensus       570 QyK~Pr~v~~~~~~~~l~~~v~~~~~s~~  598 (612)
T PLN02620        570 QYKTPRCVKFAPIIELLNSRVVSNYFSPK  598 (612)
T ss_pred             cccCceEecCHHHHHHHHhhhheeecccc
Confidence            99999999999999999999999876443

>PLN02247 indole-3-acetic acid-amido synthetase Back     alignment and domain information
>PLN02249 indole-3-acetic acid-amido synthetase Back     alignment and domain information
>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin Back     alignment and domain information
>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] Back     alignment and domain information
>TIGR03335 F390_ftsA coenzyme F390 synthetase Back     alignment and domain information
>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase Back     alignment and domain information
>TIGR02304 aden_form_hyp probable adenylate-forming enzyme Back     alignment and domain information
>PRK00174 acetyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK06060 acyl-CoA synthetase; Validated Back     alignment and domain information
>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase Back     alignment and domain information
>PTZ00237 acetyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK09274 peptide synthase; Provisional Back     alignment and domain information
>PRK04319 acetyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK07514 malonyl-CoA synthase; Validated Back     alignment and domain information
>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated Back     alignment and domain information
>TIGR03205 pimA dicarboxylate--CoA ligase PimA Back     alignment and domain information
>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional Back     alignment and domain information
>PRK06187 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 Back     alignment and domain information
>PRK07529 AMP-binding domain protein; Validated Back     alignment and domain information
>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed Back     alignment and domain information
>PLN02574 4-coumarate--CoA ligase-like Back     alignment and domain information
>PRK03584 acetoacetyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK05605 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK09088 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK05677 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK07788 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK07867 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK06164 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK07786 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK08974 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional Back     alignment and domain information
>PRK10524 prpE propionyl-CoA synthetase; Provisional Back     alignment and domain information
>PLN02654 acetate-CoA ligase Back     alignment and domain information
>PRK07656 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK06145 acyl-CoA synthetase; Validated Back     alignment and domain information
>TIGR02316 propion_prpE propionate--CoA ligase Back     alignment and domain information
>PRK05852 acyl-CoA synthetase; Validated Back     alignment and domain information
>TIGR01733 AA-adenyl-dom amino acid adenylation domain Back     alignment and domain information
>PLN02330 4-coumarate--CoA ligase-like 1 Back     alignment and domain information
>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional Back     alignment and domain information
>PRK12583 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK05850 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK07768 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK08314 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase Back     alignment and domain information
>PRK08316 acyl-CoA synthetase; Validated Back     alignment and domain information
>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase Back     alignment and domain information
>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase Back     alignment and domain information
>PRK13382 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK06839 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK13383 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK07769 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK13391 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional Back     alignment and domain information
>PRK13390 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK08315 AMP-binding domain protein; Validated Back     alignment and domain information
>TIGR02262 benz_CoA_lig benzoate-CoA ligase family Back     alignment and domain information
>PRK07638 acyl-CoA synthetase; Validated Back     alignment and domain information
>PLN02246 4-coumarate--CoA ligase Back     alignment and domain information
>PRK10252 entF enterobactin synthase subunit F; Provisional Back     alignment and domain information
>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional Back     alignment and domain information
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated Back     alignment and domain information
>PRK13388 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated Back     alignment and domain information
>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated Back     alignment and domain information
>PLN03051 acyl-activating enzyme; Provisional Back     alignment and domain information
>PRK07868 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK07798 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK06710 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PLN02860 o-succinylbenzoate-CoA ligase Back     alignment and domain information
>PRK07470 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK12476 putative fatty-acid--CoA ligase; Provisional Back     alignment and domain information
>PRK12467 peptide synthase; Provisional Back     alignment and domain information
>PRK08276 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PLN02387 long-chain-fatty-acid-CoA ligase family protein Back     alignment and domain information
>PRK07787 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed Back     alignment and domain information
>PRK09192 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK07008 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] Back     alignment and domain information
>PLN02614 long-chain acyl-CoA synthetase Back     alignment and domain information
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase Back     alignment and domain information
>PRK06188 acyl-CoA synthetase; Validated Back     alignment and domain information
>PLN02736 long-chain acyl-CoA synthetase Back     alignment and domain information
>PRK06178 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK05691 peptide synthase; Validated Back     alignment and domain information
>PRK08308 acyl-CoA synthetase; Validated Back     alignment and domain information
>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PRK10946 entE enterobactin synthase subunit E; Provisional Back     alignment and domain information
>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional Back     alignment and domain information
>PRK05620 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism] Back     alignment and domain information
>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated Back     alignment and domain information
>PRK12316 peptide synthase; Provisional Back     alignment and domain information
>PRK05857 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional Back     alignment and domain information
>PLN03102 acyl-activating enzyme; Provisional Back     alignment and domain information
>PRK12316 peptide synthase; Provisional Back     alignment and domain information
>TIGR01923 menE O-succinylbenzoate-CoA ligase Back     alignment and domain information
>PLN02861 long-chain-fatty-acid-CoA ligase Back     alignment and domain information
>PRK08279 long-chain-acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK12467 peptide synthase; Provisional Back     alignment and domain information
>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism] Back     alignment and domain information
>PTZ00342 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK06018 putative acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional Back     alignment and domain information
>PRK05691 peptide synthase; Validated Back     alignment and domain information
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated Back     alignment and domain information
>PLN03052 acetate--CoA ligase; Provisional Back     alignment and domain information
>PRK06087 short chain acyl-CoA synthetase; Reviewed Back     alignment and domain information
>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] Back     alignment and domain information
>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism] Back     alignment and domain information
>PLN02430 long-chain-fatty-acid-CoA ligase Back     alignment and domain information
>PTZ00216 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B Back     alignment and domain information
>PRK08180 feruloyl-CoA synthase; Reviewed Back     alignment and domain information
>PRK08162 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK12582 acyl-CoA synthetase; Provisional Back     alignment and domain information
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] Back     alignment and domain information
>PLN02479 acetate-CoA ligase Back     alignment and domain information
>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional Back     alignment and domain information
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family Back     alignment and domain information
>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism] Back     alignment and domain information
>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism] Back     alignment and domain information
>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism] Back     alignment and domain information
>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query415
4ewv_A581 Crystal Structure Of Gh3.12 In Complex With Ampcpp 2e-69
4b2g_A609 Crystal Structure Of An Indole-3-acetic Acid Amido 1e-67
4eq4_A581 Crystal Structure Of Seleno-Methionine Derivatized 3e-67
4epl_A581 Crystal Structure Of Arabidopsis Thaliana Gh3.11 (J 2e-61
>pdb|4EWV|A Chain A, Crystal Structure Of Gh3.12 In Complex With Ampcpp Length = 581 Back     alignment and structure 
Iteration: 1

 Score =  259 bits (662), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 136/393 (34%), Positives = 225/393 (57%), Gaps = 17/393 (4%)
Query: 22  HSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCDDL 81
           ++SP EVI+  N    +YCHLLCGL   + +    S +A  ++ A    ++ WE+LC ++
Sbjct: 187 YTSPDEVILCPNNTESLYCHLLCGLVQRDEVVRTGSIFASVMVRAIEVLKNSWEELCSNI 246
Query: 82  ENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVT 141
            +G+    +T++  ++SV  VLGGP+P+L+  I  IC +++W GI  +LWPN +YI+ V 
Sbjct: 247 RSGHLSNWVTDLGCQNSVSLVLGGPRPELADTIEEICNQNSWKGIVKRLWPNTKYIETVV 306
Query: 142 TGSMSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLP 201
           TGSM QY   + YY  ++P++   Y +SE   GINLD    P+   +  +P  +YFEF+P
Sbjct: 307 TGSMGQYVPMLNYYCNDLPLVSTTYGSSETTFGINLDPLCKPEDVSYTFMPNMSYFEFIP 366
Query: 202 FD-MEKNEAVGEETVDFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKVVDFYNSSPQVEFV 260
            D  +KN+      VD   V++G  YE VVT + G YR R+GDIV V  FYN++PQ +FV
Sbjct: 367 MDGGDKNDV-----VDLEDVKLGCTYEPVVTNFAGLYRMRVGDIVLVTGFYNNAPQFKFV 421
Query: 261 MRAP---KSSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEI 317
            R         +  +E DL  A+   +++L +   +++ +F  Y +  + P   ++++E+
Sbjct: 422 RRENVVLSIDSDKTNEEDLFKAVSQAKLVLES-SGLDLKDFTSYADTSTFPGHYVVYLEV 480
Query: 318 --REGCTKLRDSVAI----LRRCCSSLEDAFGSIYKVQRDR-GEISPLSVSIVKPGTFDR 370
             +EG  K      +    L  CC  +E++  ++YK  R + G I PL + +V+ GTFD 
Sbjct: 481 DTKEGEEKETAQFELDEEALSTCCLVMEESLDNVYKRCRFKDGSIGPLEIRVVRQGTFDS 540
Query: 371 LLQVAIEKGAPASQYKPPKIVRNREIVEFMEGC 403
           L+   I +GA   QYK P+ +++ + ++ +E C
Sbjct: 541 LMDFFISQGASTGQYKTPRCIKSGKALQVLETC 573
>pdb|4B2G|A Chain A, Crystal Structure Of An Indole-3-acetic Acid Amido Synthase From Vitis Vinifera Involved In Auxin Homeostasis Length = 609 Back     alignment and structure
>pdb|4EQ4|A Chain A, Crystal Structure Of Seleno-Methionine Derivatized Gh3.12 Length = 581 Back     alignment and structure
>pdb|4EPL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Gh3.11 (Jar1) In Complex With Ja-Ile Length = 581 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query415
4eql_A581 4-substituted benzoates-glutamate ligase GH3.12; f 1e-73
4epl_A581 Jasmonic acid-amido synthetase JAR1; ANL adenylati 4e-68
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* Length = 581 Back     alignment and structure
 Score =  239 bits (611), Expect = 1e-73
 Identities = 131/392 (33%), Positives = 221/392 (56%), Gaps = 15/392 (3%)

Query: 22  HSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCDDL 81
           ++SP EVI+  N    +YCHLLCGL   + +    S +A  ++ A    ++ WE+LC ++
Sbjct: 187 YTSPDEVILCPNNTESLYCHLLCGLVQRDEVVRTGSIFASVMVRAIEVLKNSWEELCSNI 246

Query: 82  ENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVT 141
            +G+    +T++  ++SV  VLGGP+P+L+  I  IC +++W GI  +LWPN +YI+ V 
Sbjct: 247 RSGHLSNWVTDLGCQNSVSLVLGGPRPELADTIEEICNQNSWKGIVKRLWPNTKYIETVV 306

Query: 142 TGSMSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLP 201
           TGSM QY   + YY  ++P++   Y +SE   GINLD    P+   +  +P  +YFEF+P
Sbjct: 307 TGSMGQYVPMLNYYCNDLPLVSTTYGSSETTFGINLDPLCKPEDVSYTFMPNMSYFEFIP 366

Query: 202 FDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKVVDFYNSSPQVEFVM 261
            D         + VD   V++G  YE VVT + G YR R+GDIV V  FYN++PQ +FV 
Sbjct: 367 MDGGDK----NDVVDLEDVKLGCTYEPVVTNFAGLYRMRVGDIVLVTGFYNNAPQFKFVR 422

Query: 262 RAPKSS---FEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIR 318
           R         +  +E DL  A+   +++L +   +++ +F  Y +  + P   ++++E+ 
Sbjct: 423 RENVVLSIDSDKTNEEDLFKAVSQAKLVLES-SGLDLKDFTSYADTSTFPGHYVVYLEVD 481

Query: 319 EGCTKLRDSVAI------LRRCCSSLEDAFGSIYKVQRDR-GEISPLSVSIVKPGTFDRL 371
               + +++         L  CC  +E++  ++YK  R + G I PL + +V+ GTFD L
Sbjct: 482 TKEGEEKETAQFELDEEALSTCCLVMEESLDNVYKRCRFKDGSIGPLEIRVVRQGTFDSL 541

Query: 372 LQVAIEKGAPASQYKPPKIVRNREIVEFMEGC 403
           +   I +GA   QYK P+ +++ + ++ +E C
Sbjct: 542 MDFFISQGASTGQYKTPRCIKSGKALQVLETC 573
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} Length = 581 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query415
4epl_A581 Jasmonic acid-amido synthetase JAR1; ANL adenylati 100.0
4b2g_A609 GH3-1 auxin conjugating enzyme; signaling protein, 100.0
4eql_A581 4-substituted benzoates-glutamate ligase GH3.12; f 100.0
3qov_A436 Phenylacetate-coenzyme A ligase; acetyl-COA synthe 99.23
2y27_A437 Phenylacetate-coenzyme A ligase; phenylacetic acid 99.23
2y4o_A443 Phenylacetate-coenzyme A ligase; phenylacetic acid 99.22
3etc_A580 AMP-binding protein; adenylate-forming acyl-COA sy 98.7
2d1s_A548 Luciferase, luciferin 4-monooxygenase; alpha/beta, 98.55
2v7b_A529 Benzoate-coenzyme A ligase; benzoate oxidation, be 98.53
4fuq_A503 Malonyl COA synthetase; ANL superfamily, methylma 98.48
3e7w_A511 D-alanine--poly(phosphoribitol) ligase subunit 1; 98.47
3ni2_A536 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy 98.47
3c5e_A570 Acyl-coenzyme A synthetase ACSM2A, mitochondrial; 98.44
3nyq_A505 Malonyl-COA ligase; A/B topology ababa sandwich be 98.43
1t5h_X504 4-chlorobenzoyl COA ligase; adenylate-forming coen 98.43
3kxw_A590 Saframycin MX1 synthetase B; fatty acid AMP ligase 98.36
3ivr_A509 Putative long-chain-fatty-acid COA ligase; structu 98.36
3rix_A550 Luciferase, luciferin 4-monooxygenase; oxidoreduct 98.35
1pg4_A652 Acetyl-COA synthetase; AMP-forming, adenylate-form 98.33
3fce_A512 D-alanine--poly(phosphoribitol) ligase subunit 1; 98.3
3l8c_A521 D-alanine--poly(phosphoribitol) ligase subunit 1; 98.26
1mdb_A539 2,3-dihydroxybenzoate-AMP ligase; adenylation doma 98.25
3gqw_A576 Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen 98.24
3g7s_A549 Long-chain-fatty-acid--COA ligase (FADD-1); protei 98.23
1ry2_A663 Acetyl-coenzyme A synthetase 1, acyl-activating en 98.22
4gs5_A358 Acyl-COA synthetase (AMP-forming)/AMP-acid ligase 98.19
3rg2_A617 Enterobactin synthase component E (ENTE), 2,3-DIH 98.14
3o83_A544 Peptide arylation enzyme; ligase, adenylation of 2 98.12
3r44_A517 Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s 98.1
3ite_A562 SIDN siderophore synthetase; ligase, non-ribosomal 98.04
4gr5_A570 Non-ribosomal peptide synthetase; MBTH-like domain 98.03
3tsy_A 979 Fusion protein 4-coumarate--COA ligase 1, resvera 98.01
4dg8_A620 PA1221; ANL superfamily, adenylation domain, pepti 98.0
1amu_A563 GRSA, gramicidin synthetase 1; peptide synthetase, 97.97
3hgu_A369 EHPF; phenazine, antibiotic, biosynthetic protein; 97.92
3ipl_A501 2-succinylbenzoate--COA ligase; structural genomic 97.89
1v25_A541 Long-chain-fatty-acid-COA synthetase; ligase, stru 97.62
2vsq_A 1304 Surfactin synthetase subunit 3; ligase, peptidyl c 97.51
3lax_A109 Phenylacetate-coenzyme A ligase; structural genomi 95.17
3t5a_A480 Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C 95.16
3gxs_A109 Phenylacetate-coenzyme A ligase; APC62324.1, struc 94.68
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} Back     alignment and structure
Probab=100.00  E-value=2.3e-97  Score=784.15  Aligned_cols=383  Identities=34%  Similarity=0.657  Sum_probs=355.7

Q ss_pred             ccccccCccccccCCChHHHHHHHHHhccccCCCcceEeCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHH
Q 014974           18 QLIRHSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCDDLENGYPCLDITEVAMRD   97 (415)
Q Consensus        18 ~~~~~~~P~ev~~~~d~~~~~Y~~Ll~aL~~~~~v~~i~~~f~~~l~~~~~~le~~w~~l~~dI~~Gt~~~~i~~~~~r~   97 (415)
                      ....||+|.+++.++|..+++||||||||.++++|.+|+++||++|+++++.|+++|++||+||++||++++++++++|+
T Consensus       188 ~~~~~t~P~e~i~~~D~~~~~Y~~Ll~~L~~~~~v~~i~a~fas~ll~~~~~l~~~We~l~~dI~~gtl~~~it~~~~R~  267 (581)
T 4epl_A          188 ITSPSCSPDEVIFSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFEQVWEEIVTDIKDGVLSNRITVPSVRT  267 (581)
T ss_dssp             GSCCBSSCHHHHTCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTCCCTTCCCHHHHH
T ss_pred             hhhcccCCHHHhcCCCHHHHHHHHHHHhhhccccccEEeeccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCHHHHH
Confidence            45578999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHhcCC-CCCCcccccCCCCceEEEEecCChHHHHHHHHHhhCCCCccccccccCceEEEee
Q 014974           98 SVIEVLGGPQPDLSKRIRSICGES-NWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASECYVGIN  176 (415)
Q Consensus        98 ~l~~~lg~p~p~~A~~L~~~~~~~-g~~g~~~~lWP~L~~i~~~~~G~~~~y~~~l~~~~g~v~~~~~~y~aSEg~igi~  176 (415)
                      +|++++ +|+|.+|++|+++|++. +|.|++++|||||++|+||++|+|++|+++|++|+|++|+++++|+||||+||+|
T Consensus       268 ~l~~v~-~p~~~~a~~l~~~~~~~~~~~g~i~~lWPnl~~i~~~~~G~~~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~  346 (581)
T 4epl_A          268 AMSKLL-TPNPELAETIRTKCMSLSNWYGLIPALFPNAKYVYGIMTGSMEPYVPKLRHYAGDLPLVSHDYGSSEGWIAAN  346 (581)
T ss_dssp             HHHTTC-CCCHHHHHHHHHHHHHSSTTTTHHHHHCTTCCCEEEECSGGGGGGHHHHHHHHTTSCEEECCEEETTEEEEEC
T ss_pred             HHhCCC-CCCHHHHHHHHHHhCCCCccccCHHHhCCCCceEEEEeCCChHHHHHHHHHHcCCCccccCceeccceeeeee
Confidence            999999 89999999999999986 6999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCceeeecCCceEEEeeeCCcccccccCCceeecCCcccCceEEEEeccccceeeeeeCCEEEEeeecCCCcE
Q 014974          177 LDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKVVDFYNSSPQ  256 (415)
Q Consensus       177 ~~~~~~~~~~~~~l~~~~~ffEFIp~~~~~~~~~~~~~l~l~ele~G~~YelVvTt~~GLyRYriGDvV~V~gf~~~~P~  256 (415)
                      ++|.+++++..|+|+|+.+||||||+++.  +.+++++++++|||+|++|||||||++||||||+||+|+|+||+|++|+
T Consensus       347 ~~p~~~~~~~~~~L~p~~~ffEFiP~~~~--~~~~~~~v~l~eve~G~~YelviTt~~GL~RYr~GD~v~v~g~~~~~p~  424 (581)
T 4epl_A          347 VTPRLSPEEATFAVIPNLGYFEFLPVSET--GEGEEKPVGLTQVKIGEEYEVVITNYAGLYRYRLGDVVKVIGFYNNTPQ  424 (581)
T ss_dssp             CCTTSCTTTCCEEECTTSCEEEEEEC---------CCCEEGGGCCTTCEEEEEEESTTSCSSEEEEEEEEEEEEETTEEE
T ss_pred             cCCCCCccccceeecCCcEEEEEEecccc--cCCCCceeeHHHcCCCCeEEEEEeeccceeeEEcCCEEEEecccCCCcE
Confidence            99999998899999999999999998865  4456889999999999999999999999999999999999999999999


Q ss_pred             EEEEeeCCC---cceeecCHHHHHHHHHHHHHHhhhccCceEEEEEEeecCCCCCceEEEEEEeecCccccCCCHHHHHH
Q 014974          257 VEFVMRAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRR  333 (415)
Q Consensus       257 i~F~gR~~~---l~gEkl~e~~v~~av~~a~~~l~~~~g~~l~~f~~~~d~~~~~~~Y~l~vE~~~~~~~~~~~~~~l~~  333 (415)
                      |+|+||+++   +.|||++|++|++||.+|++.|++ +|++|.+||+++|.++.|+||++|||+.+.     .+.+.+++
T Consensus       425 ~~~~gR~~~~l~~~Ge~~~~~~v~~al~~a~~~l~~-~~~~l~eft~~~d~~~~p~hyv~~wE~~~~-----~~~~~l~~  498 (581)
T 4epl_A          425 LKFICRRNLILSINIDKNTERDLQLSVESAAKRLSE-EKIEVIDFSSYIDVSTDPGHYAIFWEISGE-----TNEDVLQD  498 (581)
T ss_dssp             EEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHHHHT-TTCCEEEEEEEEECSSSSCEEEEEEEESSC-----CCHHHHHH
T ss_pred             EEEEeecCCeEEeeeeECCHHHHHHHHHHHHHhhcc-cCCeEEEEEEecCCCCCCCcEEEEEeecCC-----CCHHHHHH
Confidence            999999998   999999999999999999987866 899999999999888889999999999642     45678999


Q ss_pred             HHHHHHHHh-ChhHHHhhhcCCCCCeEEEEcCCChHHHHHHHHHhcCCCCCCCCCCccc--CCHHHHHHHhccceEEEe
Q 014974          334 CCSSLEDAF-GSIYKVQRDRGEISPLSVSIVKPGTFDRLLQVAIEKGAPASQYKPPKIV--RNREIVEFMEGCSLVTVR  409 (415)
Q Consensus       334 ~~~~ld~~L-n~~Y~~~R~~g~l~p~~v~~v~~Gtf~~~~~~~~~~G~~~~Q~K~Pr~~--~~~~~~~~L~~~~~~~~~  409 (415)
                      ||..||++| |++|+.+|..|+|+|++|++|++|+|++|+++++++|++.+|||+|||+  ++++++++|+++|++++.
T Consensus       499 ~~~~Ld~~L~n~~Y~~~R~~~~L~pl~v~~v~~G~F~~l~~~~~~~G~~~~Q~K~PR~~~~~~~~~~~~L~~~v~~~~~  577 (581)
T 4epl_A          499 CCNCLDRAFIDAGYVSSRKCKTIGALELRVVAKGTFRKIQEHFLGLGSSAGQFKMPRCVKPSNAKVLQILCENVVSSYF  577 (581)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHTSSCCCEEEEECTTHHHHHHHHHHTTC------CCCSSCCTTCHHHHHHHHTTEEEEEE
T ss_pred             HHHHHHHHhCChhHHHHHhcCCCCCcEEEEeCcchHHHHHHHHHhCCCCCCCcCCCeeecCCCHHHHHHHHhccccccc
Confidence            999999999 9999999999999999999999999999999999999999999999999  999999999999999875
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera} Back     alignment and structure
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* Back     alignment and structure
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* Back     alignment and structure
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* Back     alignment and structure
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Back     alignment and structure
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Back     alignment and structure
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Back     alignment and structure
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Back     alignment and structure
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* Back     alignment and structure
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Back     alignment and structure
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Back     alignment and structure
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Back     alignment and structure
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Back     alignment and structure
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Back     alignment and structure
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Back     alignment and structure
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 Back     alignment and structure
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A Back     alignment and structure
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Back     alignment and structure
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Back     alignment and structure
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Back     alignment and structure
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Back     alignment and structure
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Back     alignment and structure
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Back     alignment and structure
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} Back     alignment and structure
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Back     alignment and structure
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* Back     alignment and structure
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Back     alignment and structure
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Back     alignment and structure
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A Back     alignment and structure
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Back     alignment and structure
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Back     alignment and structure
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Back     alignment and structure
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Back     alignment and structure
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Back     alignment and structure
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Back     alignment and structure
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Back     alignment and structure
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus} Back     alignment and structure
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query415
d1pg4a_643 Acetyl-CoA synthetase {Salmonella enterica [TaxId: 98.2
d1lcia_541 Luciferase {Firefly (Photinus pyralis) [TaxId: 705 98.1
d1amua_514 Phenylalanine activating domain of gramicidin synt 97.91
d1ry2a_640 Acetyl-CoA synthetase {Baker's yeast (Saccharomyce 97.53
d3cw9a1503 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId 97.31
d1mdba_536 Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil 96.69
d1v25a_534 Long chain fatty acid-CoA ligase TT0168 {Thermus t 96.49
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=98.20  E-value=3.2e-05  Score=80.00  Aligned_cols=223  Identities=16%  Similarity=0.136  Sum_probs=117.5

Q ss_pred             CCCceEEEEecCC-h-HHHHHHHHHhhC--CCCccccccccCceE-E-EeeCCCCC--CCCCceeeecCCceEEEeeeCC
Q 014974          132 PNVRYIKCVTTGS-M-SQYCSKIKYYAG--EVPVLGGDYFASECY-V-GINLDIAQ--PPQTTRFVMLPTAAYFEFLPFD  203 (415)
Q Consensus       132 P~L~~i~~~~~G~-~-~~y~~~l~~~~g--~v~~~~~~y~aSEg~-i-gi~~~~~~--~~~~~~~~l~~~~~ffEFIp~~  203 (415)
                      +.|++|  +.+|. + +.....+.+.+|  +++++ .+||.||.. + ..+.....  .++.. ...+|+.. ...++.+
T Consensus       374 ~sLr~i--~~~G~pl~~~~~~~~~~~~g~~~~~i~-~~yG~TE~g~~~~~~~~~~~~~~~gs~-G~p~~g~~-v~ivd~~  448 (643)
T d1pg4a_         374 SSLRIL--GSVGEPINPEAWEWYWKKIGKEKCPVV-DTWWQTETGGFMITPLPGAIELKAGSA-TRPFFGVQ-PALVDNE  448 (643)
T ss_dssp             TTCCEE--EEESSCCCHHHHHHHHHHTTTTCSCEE-EEBCCGGGSSCSBCCCTTTCCBCTTCC-BSBCTTCC-EEEECTT
T ss_pred             CceEEE--EEEeCCCCHHHHHHHHHHhCCCCceEE-EeechhhccceEEecCCCccCCCCCcc-ccccCCCE-EEEECCC
Confidence            577744  33443 2 555677777775  48898 999999952 2 22221111  11111 12234432 3444432


Q ss_pred             cccccccCCceeecCCcccCceEEEEeccc-----ccee----------------eeeeCCEEEEeeecCCCcEEEEEee
Q 014974          204 MEKNEAVGEETVDFSGVEIGKMYEVVVTTY-----RGFY----------------RYRLGDIVKVVDFYNSSPQVEFVMR  262 (415)
Q Consensus       204 ~~~~~~~~~~~l~l~ele~G~~YelVvTt~-----~GLy----------------RYriGDvV~V~gf~~~~P~i~F~gR  262 (415)
                              ++     +++.|+.+||+|+..     .|+|                -|++||++++..    .=.+.|+||
T Consensus       449 --------g~-----~~~~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~----dG~l~i~GR  511 (643)
T d1pg4a_         449 --------GH-----PQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDE----DGYYWITGR  511 (643)
T ss_dssp             --------CC-----BCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECT----TSCEEEEEE
T ss_pred             --------CC-----CCCCCceEEEEEecCCCcccccccCChhhchhhhcccCCCeEEcCCEEEECC----CceEEEecc
Confidence                    22     356899999999863     2332                177999999864    346999999


Q ss_pred             CCC---cceeecCHHHHHHHHHHHHHHhhhccCceEEEEEEee--cCCCCCceEEEEEEeecCccccCCCHHHHHHHHHH
Q 014974          263 APK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYT--NLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSS  337 (415)
Q Consensus       263 ~~~---l~gEkl~e~~v~~av~~a~~~l~~~~g~~l~~f~~~~--d~~~~~~~Y~l~vE~~~~~~~~~~~~~~l~~~~~~  337 (415)
                      .++   +.|++++..+|++++.+. +      +  +.+-+++.  +.. ....-+.||.+..+   ...+.+..+++.+.
T Consensus       512 ~dd~ik~~G~ri~p~eIE~~l~~~-p------~--V~eaaVvg~~d~~-~ge~~~a~Vv~~~~---~~~~~~~~~~i~~~  578 (643)
T d1pg4a_         512 VDDVLNVSGHRLGTAEIESALVAH-P------K--IAEAAVVGIPHAI-KGQAIYAYVTLNHG---EEPSPELYAEVRNW  578 (643)
T ss_dssp             SSSEEEETTEEEEHHHHHHHHHHS-T------T--EEEEEEEEEEETT-TEEEEEEEEEECTT---CCCCHHHHHHHHHH
T ss_pred             cccEEEECCEEECHHHHHHHHHhC-C------C--cceEEEEEEECCC-CCeEEEEEEEECCC---CCCCHHHHHHHHHH
Confidence            998   889999999999998753 1      2  33444332  321 11233467777543   12344444444445


Q ss_pred             HHHHhChhHHHhhhcCCCCCeEEEEcCC------ChHHH--HHHHHHhcCCCCCCCCCCcccCCHHHHHHHh
Q 014974          338 LEDAFGSIYKVQRDRGEISPLSVSIVKP------GTFDR--LLQVAIEKGAPASQYKPPKIVRNREIVEFME  401 (415)
Q Consensus       338 ld~~Ln~~Y~~~R~~g~l~p~~v~~v~~------Gtf~~--~~~~~~~~G~~~~Q~K~Pr~~~~~~~~~~L~  401 (415)
                      +.+.|.         ..-.|-.|.+|+.      |-..+  +++  +..|. ..+.+-+--+.|++.++.+.
T Consensus       579 ~~~~L~---------~~~vP~~i~~v~~lP~T~sGKi~R~~Lr~--~~~~~-~~~~~~~~t~~~p~~l~~~~  638 (643)
T d1pg4a_         579 VRKEIG---------PLATPDVLHWTDSLPKTRSGKIMRRILRK--IAAGD-TSNLGDTSTLADPGVVEKLL  638 (643)
T ss_dssp             HHHHTC---------GGGCCSEEEECSCCCBCTTSCBCHHHHHH--HHHTC-----------CCTTHHHHHH
T ss_pred             HHhhCC---------cccCccEEEEECCCCCCCCcCccHHHHHH--HhcCC-ccccCCccccCChHHHHHHH
Confidence            555451         1234556666542      32222  222  12332 22344455677777776554
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Back     information, alignment and structure
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Back     information, alignment and structure
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Back     information, alignment and structure
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure