Citrus Sinensis ID: 014983

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-----
Protein Sequence
MESGANGDSIEKLQGLQITPLDDDDEEEREMVAYEYEDDDEDDGEDEEEQKPVTLGFLEKPKNRWSLLRHLFPSKAGGPPAWLDPINLPTGRSCLCDMCGEPLQFVLQVYAPIIEKESTFHRTLFLFMCPSMACLRRDQHEQWKRPPEKASRSVKVFRCQLPRSNPYYSSEPPKCNGTDKPSGPGVSLCNWCGTWKGDKVCSSCRRAHYCQQKHQVTHWRSGHKVECQQLNLSSPSSDSNLADAGTTSVASNSLWPEYEMINEDESEYDTEMSEVNGQTNALVSKTGVDDTMKSLLDSFEGDSDRRSWATFQEHLAKAPEQVLRYCRSAGAKALWPTSSGQLSKADIPKCSYCGGPRCFEFQILPQLLFYFGVSNDVDSLDWATMVVYTCESSCEANVSYKEEFVWVQHSLSSVP
Secondary Structure (PSIPRED)
cccccccccHHHccccccccccccccHHHcccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccEEEEEEccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccHHcccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccHHHHHHcccccccHHHHHHHHHHHHHHccccEEEEccccccEEEEEcccccccccccccccccccccEEEEEEcHHHHHHHccccccccEEEcEEEEEEccccccccccEEEEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHccEEcccccccccccccEEcccccccccccccHcccccEEEcccccccccHccccccccccccccccccccccccccHHccccHccccEEEEEEEEcccccccccccEEEEEEEcccccccccccccEEEEcccccccccEEEHcccccccccccccccccccccccccccccHHHHccccccccccccccccccccHHHHHcccccccHHHHccccccccHcccccccccccccccccccccEEEEEcccccccccccHcccHHHHHHccccccccHHHHHHHHccccccHHHHHHHHHHHHcccEEEEEEccccccEEEEcccccccccccccccccccccEEEEEEcHHHHHHHcHccccccccEEEEEEEEcccccccccccEEEEEEEEccccccc
Coil and Loop (DISEMBL)
mesgangdsieklqglqitplddddeEEREMVAYEyedddeddgedeeeqkpvtlgflekpknRWSLLRhlfpskaggppawldpinlptgrsclcdmcgeplQFVLQVYAPIIEKESTFHRTLFLfmcpsmaclrrdqheqwkrppekasrsVKVFRcqlprsnpyysseppkcngtdkpsgpgvslcnwcgtwkgdkvcsscrrahycqqkhqvthwrsghkvecqqlnlsspssdsnladagttsvasnslwpeyeminedeseydtemseVNGQTNALVSKTGVDDTMKSLLDSfegdsdrrSWATFQEHLAKAPEQVLRYCRSAgakalwptssgqlskadipkcsycggprcfefqilpQLLFyfgvsndvdsldWATMVVYTCESSCEANVSYKEEFVWVQHSLSSVP
Flexible Loop (DISEMBL)
mesgangdsieklqglqitplddddeEEREMVAYEyedddeddgedeeeqkpvtlgflekpknRWSLLRHLfpskaggppaWLDPINLPTGRSCLCDMCGEPLQFVLQVYAPIIEKESTFHRTLFLFMCPSMACLRRDQHEQwkrppekasrsvkvfrcqlprsnpyysseppkcNGTDKPSGPGVSLCNWCGTWKGDKVCSSCRRAHYCQQKHQVTHWRSGHKVECQQLNLSSPSSDSNLADAGTTsvasnslwpeYEMINEDESEYDTEMSEVNGQTNALVSKTGVDDTMKSLLDSFEGDSDRRSWATFQEHLAKAPEQVLRYCRSAGAKALwptssgqlskaDIPKCSYCGGPRCFEFQILPQLLFYFGVSNDVDSLDWATMVVYTCESSCEANVSYKEEFVWVQHSLSSVP
Low Complexity Region (SEG)
MESGANGDSIEKLQGLQITPLDDddeeeremvayeyedddeddgedeeeQKPVTLGFLEKPKNRWSLLRHLFPSKAGGPPAWLDPINLPTGRSCLCDMCGEPLQFVLQVYAPIIEKESTFHRTLFLFMCPSMACLRRDQHEQWKRPPEKASRSVKVFRCQLPRSNPYYSSEPPKCNGTDKPSGPGVSLCNWCGTWKGDKVCSSCRRAHYCQQKHQVTHWRSGHKVECQQLnlsspssdsnladaGTTSVASNSLWPEYEMINEDESEYDTEMSEVNGQTNALVSKTGVDDTMKSLLDSFEGDSDRRSWATFQEHLAKAPEQVLRYCRSAGAKALWPTSSGQLSKADIPKCSYCGGPRCFEFQILPQLLFYFGVSNDVDSLDWATMVVYTCESSCEANVSYKEEFVWVQHSLSSVP
Disordered region (IsUnstruct)
******************************************************LGFLEKPKNRWSLLRHLFPSKAGGPPAWLDPINLPTGRSCLCDMCGEPLQFVLQVYAPIIEKESTFHRTLFLFMCPSMACLRR************************************************VSLCNWCGTWKGDKVCSSCRRAHYCQQKHQVTHWRSGHKVEC********************************************************************************WATFQEHLAKAPEQVLRYCRSAGAKALWPTSSGQLSKADIPKCSYCGGPRCFEFQILPQLLFYFGVSNDVDSLDWATMVVYTCESSCEANVSYKEEFVWVQH******
Disordered Region (DISOPRED)
**************GLQI*********************************PVTLGFLEKPKNRWSLLRHLFPSKAGGPPAWLDPINLPTGRSCLCDMCGEPLQFVLQVYAPIIEKESTFHRTLFLFMCPSMACLRRDQHEQWKRPPEKASRSV**********************GTDKPSGPGVSLCNWC*******************************************SSDSNLADAGTTSVASNSLWPEYEMINEDESEYDTEM**********************LLDSFEGDSDRRSWATFQEHLAKAPEQVLRYCRSAGAKALWPT**************YCGGPRCFEFQILPQLLFYFGVSNDVDSLDWATMVVYTCESSCEANVSYKEEFVWVQHSLS***
Disordered Region (DISEMBL)
*********IEKLQGLQITPLDDDDEEEREMVAYE***************KPVTLGFLEKPKNRWSLLRHLFPSKAGGPPAWLDPINLPTGRSCLCDMCGEPLQFVLQVYAPIIEKESTFHRTLFLFMCPSMACLRR*****************KVFRCQLPRSNPYYSSEPPKCNGTDKPSGPGVSLCNWCGTWKGDKVCSSCRRAH**************HKVECQQLNL****************VASNSLWPEYEMINED***********NGQTNALVSKTGVDDTMKSLLDSFEGDSDRRSWATFQEHLAKAPEQVLRYCRSAGAKALWPTSSGQLSKADIPKCSYCGGPRCFEFQILPQLLFYFGVSNDVDSLDWATMVVYTCESSCEANVSYKEEFVWVQHSLSSVP
Disordered Region (DISPRO)
*******DSIEKLQGL*ITPLDDD****REMVAYEYEDD*****ED*EEQKPVTLGFLEKPKNRWSLLRHLFPSKAGGPPAWLDPINLPTGRSCLCDMCGEPLQFVLQVYAPIIEKESTFHRTLFLFMCPSMACLRRDQHEQWKRPPEKASRSVKVFRCQLPRSNPYYSSE*************GVSLCNWCGTWKGDKVCSSCRRAHYCQQKHQVTHWRSGHKVECQ****************GTTSVASNSLWPEYEMINEDESE**********************DTMKSLLDSFEGDSDRRSWATFQEHLAKAPEQVLRYCRSAGAKALWPTSSGQLSKADIPKCSYCGGPRCFEFQILPQLLFYFGVSNDVDSLDWATMVVYTCESSCEANVSYKEEFVWVQHSLSS**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESGANGDSIEKLQGLQITPLDDDDEEEREMVAYEYEDDDEDDGEDEEEQKPVTLGFLEKPKNRWSLLRHLFPSKAGGPPAWLDPINLPTGRSCLCDMCGEPLQFVLQVYAPIIEKESTFHRTLFLFMCPSMACLRRDQHEQWKRPPEKASRSVKVFRCQLPRSNPYYSSEPPKCNGTDKPSGPGVSLCNWCGTWKGDKVCSSCRRAHYCQQKHQVTHWRSGHKVECQQLNLSSPSSDSNLADAGTTSVASNSLWPEYEMINEDESEYDTEMSEVNGQTNALVSKTGVDDTMKSLLDSFEGDSDRRSWATFQEHLAKAPEQVLRYCRSAGAKALWPTSSGQLSKADIPKCSYCGGPRCFEFQILPQLLFYFGVSNDVDSLDWATMVVYTCESSCEANVSYKEEFVWVQHSLSSVP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	415	2.2.26 [Sep-21-2011]
P47816	343	Programmed cell death pro	yes	no	0.778	0.941	0.372	2e-57
Q2YDC9	344	Programmed cell death pro	yes	no	0.780	0.941	0.368	7e-57
P46718	343	Programmed cell death pro	yes	no	0.780	0.944	0.374	4e-56
Q16342	344	Programmed cell death pro	yes	no	0.778	0.938	0.365	3e-53
Q5ZID2	379	Programmed cell death pro	no	no	0.751	0.823	0.269	6e-16
Q8C5N5	364	Programmed cell death pro	no	no	0.742	0.846	0.260	1e-15
Q9BRP1	358	Programmed cell death pro	no	no	0.754	0.874	0.262	3e-15
Q09787	274	Uncharacterized protein C	yes	no	0.354	0.536	0.305	9e-12
P87156	396	Probable 20S rRNA accumul	no	no	0.233	0.244	0.288	3e-05
P25040	408	20S rRNA accumulation pro	yes	no	0.821	0.835	0.218	0.0001

>sp|P47816|PDCD2_RAT Programmed cell death protein 2 OS=Rattus norvegicus GN=Pdcd2 PE=2 SV=2

 Score =  223 bits (568), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 135/362 (37%), Positives = 176/362 (48%), Gaps = 39/362 (10%)

Query: 53  VTLGFLEKPKNRWSLLRHLFPSKAGGPPAWLDPINLPTGRSCLCDMCGEPLQFVLQVYAP 112
           V LGF+E+    W L    FPSK GG PAWL    LP   +  C  CG PL F+LQVYAP
Sbjct: 9   VELGFVEEAPA-WRLRSEQFPSKVGGRPAWLALAELPGPGALACARCGRPLAFLLQVYAP 67

Query: 113 IIEKESTFHRTLFLFMCPSMACLRRDQHEQWKRPPEKASRSVKVFRCQLPRSNPYYSSEP 172
           +  ++  FHR+LFLF C    C                   ++VFR QLPR N +YS EP
Sbjct: 68  LPGRDEAFHRSLFLFCCREPLC----------------CAGLRVFRNQLPRKNAFYSYEP 111

Query: 173 PKCNGTDKPS------GPGVSLCNWCGTWKGDKVCSSCRRAHYCQQKHQVTHWRSGHKVE 226
           P   G             G  LC  CG       CS C++AHYC ++HQ   W+ GHK  
Sbjct: 112 PSETGASDTECVCLQLKSGAHLCRVCGCL-APMTCSRCKQAHYCSKEHQTLDWQLGHKQA 170

Query: 227 CQQLNLSSPSSDSNLADAGTTSVASNSLWPEYEMINEDESEYDTEMSEVNGQTNALVSKT 286
           C Q    S   D  + D        N L+PE+E++ E E E   E+ E+   +  + S  
Sbjct: 171 CTQ----SDHLDHMVPD-------HNFLFPEFEIVTETEDEIGPEVVEMEDYSEVIGSME 219

Query: 287 GVDDTMKSLLDSFEGDSDRRSWATFQEHLAKAPEQVLRYCRSAGAKALWPTSSGQLSKAD 346
           GV +     +   E   D   +  F+  +A  PEQ+LRY R  G K +W +      + D
Sbjct: 220 GVPEEELDSMAKHESKED-HIFQKFKSKIALEPEQILRYGR--GIKPIWISGENIPQEKD 276

Query: 347 IPKCSYCGGPRCFEFQILPQLLFYFGVSNDVDSLDWATMVVYTCESSCEANVSYKEEFVW 406
           IP CS CG  R FEFQ++PQLL +        S+DW  + V+TC  SC   + Y EEFVW
Sbjct: 277 IPDCS-CGAKRIFEFQVMPQLLNHLKADRLGTSVDWGILAVFTCAESCSLGIGYTEEFVW 335

Query: 407 VQ 408
            Q
Sbjct: 336 KQ 337

May be a DNA-binding protein with a regulatory function. May play an important role in cell death and/or in regulation of cell proliferation.
Rattus norvegicus (taxid: 10116)

>sp|Q2YDC9|PDCD2_BOVIN Programmed cell death protein 2 OS=Bos taurus GN=PDCD2 PE=2 SV=1

 Score =  221 bits (563), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 137/372 (36%), Positives = 179/372 (48%), Gaps = 48/372 (12%)

Query: 48  EEQKPVTLGFLEKPKNRWSLLRHLFPSKAGGPPAWLDPINLPTGRSCLCDMCGEPLQFVL 107
           E   P  LGF+E   + W L    FPSK GG PAWL    LP      C +CG P+ F+L
Sbjct: 4   ESAGPAELGFVEAAPS-WRLRSEQFPSKVGGRPAWLSAAGLPGPPELACPLCGRPMAFLL 62

Query: 108 QVYAPIIEKESTFHRTLFLFMCPSMACLRRDQHEQWKRPPEKASRSVKVFRCQLPRSNPY 167
           QVYAP+  +   FHR LFLF C +  C                   ++VFR QLPR N +
Sbjct: 63  QVYAPLPGRADAFHRCLFLFCCRTPPC----------------CCGLRVFRNQLPRQNDF 106

Query: 168 YSSEPPKCNGTDKPSGPGVS----------LCNWCGTWKGDKVCSSCRRAHYCQQKHQVT 217
           YS EPP     D PS  G S          LC  CG   G K CS C +AHYC ++HQ  
Sbjct: 107 YSYEPPS---EDPPSETGESVYLHLKSGAHLCRVCGC-SGPKRCSRCHKAHYCSKEHQSL 162

Query: 218 HWRSGHKVECQQL-NLSSPSSDSNLADAGTTSVASNSLWPEYEMINEDESEYDTEMSEVN 276
            WR GHK  C Q  NL +   D N             L+PE+E++ E E E   E+ E +
Sbjct: 163 DWRLGHKQACAQTDNLDNIVPDHNF------------LFPEFEIVIETEDEIMPEVVERD 210

Query: 277 GQTNALVSKTGVDDTMKSLLDSFEGDSDRRSWATFQEHLAKAPEQVLRYCRSAGAKALWP 336
            ++  + +     +     +   E   D R +  F+  ++  PEQ+LRY R  G   LW 
Sbjct: 211 DESEIIGTMGEAHEEELESMAKHESKED-RIFRKFKTKISLEPEQILRYGR--GIAPLWI 267

Query: 337 TSSGQLSKADIPKCSYCGGPRCFEFQILPQLLFYFGVSNDVDSLDWATMVVYTCESSCEA 396
           +      + DIP C  CG  R FEFQ++PQLL Y        S+DW  + ++TC  SC+ 
Sbjct: 268 SGENTPKEKDIPDCP-CGAKRLFEFQVMPQLLNYLKADRLGRSVDWGVLAIFTCAESCKL 326

Query: 397 NVSYKEEFVWVQ 408
            + Y EEFVW Q
Sbjct: 327 GIGYTEEFVWKQ 338

May be a DNA-binding protein with a regulatory function. May play an important role in cell death and/or in regulation of cell proliferation.

Bos taurus (taxid: 9913)

>sp|P46718|PDCD2_MOUSE Programmed cell death protein 2 OS=Mus musculus GN=Pdcd2 PE=2 SV=2

 Score =  219 bits (557), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 136/363 (37%), Positives = 177/363 (48%), Gaps = 39/363 (10%)

Query: 52  PVTLGFLEKPKNRWSLLRHLFPSKAGGPPAWLDPINLPTGRSCLCDMCGEPLQFVLQVYA 111
           PV LGF E+    W L    FPSK GG PAWL    LP   +  C  CG PL F+LQVYA
Sbjct: 8   PVELGFAEEAPA-WRLRSEQFPSKVGGRPAWLGLAELPGPGALACARCGRPLAFLLQVYA 66

Query: 112 PIIEKESTFHRTLFLFMCPSMACLRRDQHEQWKRPPEKASRSVKVFRCQLPRSNPYYSSE 171
           P+  ++  FHR+LFLF C    C                   ++VFR QLPR+N +YS E
Sbjct: 67  PLPGRDDAFHRSLFLFCCREPLC----------------CAGLRVFRNQLPRNNAFYSYE 110

Query: 172 PP---KCNGTD---KPSGPGVSLCNWCGTWKGDKVCSSCRRAHYCQQKHQVTHWRSGHKV 225
           PP   +  GT+        G  LC  CG       CS C++AHYC ++HQ   WR GHK 
Sbjct: 111 PPSETEALGTECVCLQLKSGAHLCRVCGCL-APMTCSRCKQAHYCSKEHQTLDWRLGHKQ 169

Query: 226 ECQQLNLSSPSSDSNLADAGTTSVASNSLWPEYEMINEDESEYDTEMSEVNGQTNALVSK 285
            C Q    S   D  + D        N L+PE+E++ E E E   E+ E+   +    S 
Sbjct: 170 ACTQ----SDKIDHMVPD-------HNFLFPEFEIVTETEDEILPEVVEMEDYSEVTGSM 218

Query: 286 TGVDDTMKSLLDSFEGDSDRRSWATFQEHLAKAPEQVLRYCRSAGAKALWPTSSGQLSKA 345
            G+ +     +   E   D   +  F+  +A  PEQ+LRY R  G K +W +      + 
Sbjct: 219 GGIPEEELDSMAKHESKED-HIFQKFKSKIALEPEQILRYGR--GIKPIWISGENIPQEK 275

Query: 346 DIPKCSYCGGPRCFEFQILPQLLFYFGVSNDVDSLDWATMVVYTCESSCEANVSYKEEFV 405
           DIP C  CG  R FEFQ++PQLL +        S+DW  + V+TC  SC     Y EEFV
Sbjct: 276 DIPDCP-CGAKRIFEFQVMPQLLNHLKADRLGRSIDWGVLAVFTCAESCSLGSGYTEEFV 334

Query: 406 WVQ 408
           W Q
Sbjct: 335 WKQ 337

May be a DNA-binding protein with a regulatory function. May play an important role in cell death and/or in regulation of cell proliferation.

Mus musculus (taxid: 10090)

>sp|Q16342|PDCD2_HUMAN Programmed cell death protein 2 OS=Homo sapiens GN=PDCD2 PE=1 SV=2

 Score =  209 bits (532), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 134/367 (36%), Positives = 177/367 (48%), Gaps = 44/367 (11%)

Query: 51  KPVTLGFLEKPKNRWSLLRHLFPSKAGGPPAWLDPINLPTGRSCLCDMCGEPLQFVLQVY 110
           +PV LGF E     W L    FPSK GG PAWL    LP  ++  C++CG PL F+LQVY
Sbjct: 7   RPVELGFAESAPA-WRLRSEQFPSKVGGRPAWLGAAGLPGPQALACELCGRPLSFLLQVY 65

Query: 111 APIIEKESTFHRTLFLFMCPSMACLRRDQHEQWKRPPEKASRSVKVFRCQLPRSNPYYSS 170
           AP+  +   FHR +FLF C    C                   ++VFR QLPR N +YS 
Sbjct: 66  APLPGRPDAFHRCIFLFCCREQPC----------------CAGLRVFRNQLPRKNDFYSY 109

Query: 171 EPPKCNGTDKPS-------GPGVSLCNWCGTWKGDKVCSSCRRAHYCQQKHQVTHWRSGH 223
           EPP  N   +           G  LC  CG   G K CS C +A+YC ++HQ   WR GH
Sbjct: 110 EPPSENPPPETGESVCLQLKSGAHLCRVCGCL-GPKTCSRCHKAYYCSKEHQTLDWRLGH 168

Query: 224 KVECQQLNLSSPSSDSNLADAGTTSVASNSLWPEYEMINEDESEYDTEMSEVNGQTNALV 283
           K  C Q +      D  + D        N L+PE+E++ E E E   E+ E    +  + 
Sbjct: 169 KQACAQPD----HLDHIIPD-------HNFLFPEFEIVIETEDEIMPEVVEKEDYSEIIG 217

Query: 284 SKTGVDDTMKSLLDSFEGDSDR--RSWATFQEHLAKAPEQVLRYCRSAGAKALWPTSSGQ 341
           S   + + ++  LDS      R  + +  F+  +A  PEQ+LRY R  G   +W +    
Sbjct: 218 S---MGEALEEELDSMAKHESREDKIFQKFKTQIALEPEQILRYGR--GIAPIWISGENI 272

Query: 342 LSKADIPKCSYCGGPRCFEFQILPQLLFYFGVSNDVDSLDWATMVVYTCESSCEANVSYK 401
             + DIP C  CG  R  EFQ++PQLL Y        S+DW  + V+TC  SC     Y 
Sbjct: 273 PQEKDIPDCP-CGAKRILEFQVMPQLLNYLKADRLGKSIDWGILAVFTCAESCSLGTGYT 331

Query: 402 EEFVWVQ 408
           EEFVW Q
Sbjct: 332 EEFVWKQ 338

May be a DNA-binding protein with a regulatory function. May play an important role in cell death and/or in regulation of cell proliferation.

Homo sapiens (taxid: 9606)

>sp|Q5ZID2|PDD2L_CHICK Programmed cell death protein 2-like OS=Gallus gallus GN=PDCD2L PE=2 SV=1

 Score = 85.5 bits (210), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 101/375 (26%), Positives = 152/375 (40%), Gaps = 63/375 (16%)

Query: 73  PSKAGG-PPAWLD------PINLPTGR-SC-LCDMCGEPLQFVLQVYAPIIEKESTFHRT 123
           P + GG PP W           LP+ R  C  C  CG  L  ++QVY P+    S FHR 
Sbjct: 20  PCRGGGEPPGWATNKLGGRADALPSVRPGCPRCGACGAALAHLVQVYCPL--GASPFHRL 77

Query: 124 LFLFMCPSMACLRRDQHEQWKRPPEKASRSVKVFRCQLPRSNPYYSSEPPKCNGTDKPSG 183
             +F C   AC  R Q  +  R     +R      C         S +  +CN + K   
Sbjct: 78  ANVFACAESACWGRPQSWKVLRSQSLEARGQDALGCG--------SKQKEECNFSAK--- 126

Query: 184 PGVSLCNWCGT---WKGDKVCSSCRRAHYCQQKHQVTHWRSGHKVEC----QQLNLSSPS 236
                 +WC     W G     S   A      +      +  + +C    Q+L+LS  +
Sbjct: 127 ------DWCAEADDWGGCDGTESSTCALQMLGLNAGMSSSASEEAQCVSQLQELHLSEAA 180

Query: 237 SDSN------LADAGTTSVASNSLWPEYEMINEDESEYD--TEMSEVNGQTNALVSKTGV 288
             S       L         S  ++  Y +   DE++Y    +    N        + GV
Sbjct: 181 DVSGSLNTDLLLREEMVMATSAPVFHSYYISVVDEADYAGFLDTDHANKLLKEYQQREGV 240

Query: 289 DDTMKSLL-DSFEGD------------SDRRSWATFQEHLAKAPEQVLRYCRSAGAKALW 335
           D  ++ L+ +SF G+            S   ++  F + ++  PEQ+LRY  S G + L+
Sbjct: 241 D--LEHLMSESFAGEDSNEKYEKTKVRSGDHTFHKFMKRISVCPEQILRY--SWGGQPLF 296

Query: 336 PTSSGQLSKADIPKCSYCGGPRCFEFQILPQLLFYFGVSNDVDSLDWATMVVYTCESSC- 394
            T         IP CS CG  R FEFQ++P L+       D+ S+++ T++VYTCE SC 
Sbjct: 297 ITCPPANFDNSIPACSNCGSNRVFEFQLMPALVSMLWGDADL-SVEFGTVIVYTCERSCW 355

Query: 395 -EANVSYKEEFVWVQ 408
                +  EEF++VQ
Sbjct: 356 PTNQQTPLEEFIFVQ 370

Gallus gallus (taxid: 9031)

>sp|Q8C5N5|PDD2L_MOUSE Programmed cell death protein 2-like OS=Mus musculus GN=Pdcd2l PE=2 SV=1

 Score = 84.7 bits (208), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 151/372 (40%), Gaps = 64/372 (17%)

Query: 50  QKPVTLGFLE-------KPKNRWSLLRHLFPSKAGGPPAWLDPINLPTGRSCLCDMCGEP 102
           +KPV LG  +       K  + W+       SK GG P  L  +  P  +   C  C +P
Sbjct: 5   RKPVLLGLRDTAVKGCPKGPSAWT------SSKLGGVPDALPAVTTPGPQ---CGRCAQP 55

Query: 103 LQFVLQVYAPIIEKESTFHRTLFLFMCPSMACLRRDQHEQWK-------RPPEKASRSVK 155
           L  V+QVY P+    S FHR L++F C    C    Q   WK       + PEK + + +
Sbjct: 56  LTLVVQVYCPL--DGSPFHRLLYVFACARPGC-GNSQTRSWKVFRSQCLQVPEKETWNAQ 112

Query: 156 VFRCQLPRSNPYYSSEPPKCNGTDKPSGPGVSLCNWCGTWKGDKVCSSCRRAHYCQQKHQ 215
                L   N    S+    +  + P  P   L    G+   D      R   + ++   
Sbjct: 113 NQSDSLAAENWCEGSQDWGSDTEETPPPPASDL----GSDSND-----VRALDWTEKLQA 163

Query: 216 VTHWRSGHKVECQQLNLSSPSSDSNLADAGTTSVASNSLWPEYEMINEDESEYDT--EMS 273
           +    +   V C      SPS      +  T   A     P Y  + E+E +Y +  ++ 
Sbjct: 164 LRLQDTALAVTC-----PSPS-----GEGLTVPTAVPQFQPYYICVAEEE-DYGSVVDLD 212

Query: 274 EVNGQTNALVSKTGVDDTMKSLLDSFEGDSDRR-----------SWATFQEHLAKAPEQV 322
             +        + GVD  M+ LL     D D +           ++  F + +A   EQ+
Sbjct: 213 HAHSLLQEYQRREGVD--MEQLLSLGSSDGDEKYEKTTVSSGDPTFYRFMKRIAACQEQI 270

Query: 323 LRYCRSAGAKALWPTSSGQLSKADIPKCSYCGGPRCFEFQILPQLLFYFGVSNDVDSLDW 382
           LRY  S     L   S      +++P CS CGG R FEFQ++P L+     +N   ++++
Sbjct: 271 LRYSWSGEPLFL---SCPTFEVSEVPACSGCGGQRTFEFQLMPALVSMLSSANLGLAVEF 327

Query: 383 ATMVVYTCESSC 394
            T++VYTC+ SC
Sbjct: 328 GTILVYTCKQSC 339

Over-expression suppresses AP1, CREB, NFAT, and NF-kB transcriptional activation, and delays cell cycle progression at S phase.

Mus musculus (taxid: 10090)

>sp|Q9BRP1|PDD2L_HUMAN Programmed cell death protein 2-like OS=Homo sapiens GN=PDCD2L PE=1 SV=1

 Score = 83.6 bits (205), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 102/389 (26%), Positives = 152/389 (39%), Gaps = 76/389 (19%)

Query: 51  KPVTLGFLEKPKN-------RWSLLRHLFPSKAGGPPAWLDPINLPTGRSCLCDMCGEPL 103
           KPV LG  + P +        W+       SK GG P  L  +  P     +C  CG+PL
Sbjct: 6   KPVLLGLRDAPVHGSPTGPGAWTA------SKLGGIPDALPTVAAPRP---VCQRCGQPL 56

Query: 104 QFVLQVYAPIIEKESTFHRTLFLFMCPSMACLRRDQHEQWKRPPEKASRSVKVFRCQLPR 163
             V+QVY P+  + S FHR L +F C    C                +RS KVFR Q  +
Sbjct: 57  ALVVQVYCPL--EGSPFHRLLHVFACACPGC------------STGGARSWKVFRSQCLQ 102

Query: 164 SNPYYSSEPPKCNGTDKPSGPGVSLCNWC---GTWKGDKVCSSCRRAHYCQQKHQVTHWR 220
                   P +     +  G  ++  +WC     W  D                Q T   
Sbjct: 103 V-------PEREAQDAQKQGNSLAAEDWCEGADDWGSDTEEGP---------SPQFTLDF 146

Query: 221 SGHKVECQQLNLSSPSSDSNLADAGTTSV----ASNSLWPEYEMINEDESEYD--TEMSE 274
                  + ++ ++   D  L DA   +         L+  Y +   DE +Y     +  
Sbjct: 147 GNDASSAKDVDWTARLQDLRLQDAVLGAAHPVPPGLPLFLPYYICVADEDDYRDFVNLDH 206

Query: 275 VNGQTNALVSKTGVDDTMKSLL-DSFEGDSDRR-----------SWATFQEHLAKAPEQV 322
            +        + G+   M  LL  S   D D +           ++  F + +A   EQ+
Sbjct: 207 AHSLLRDYQQREGI--AMDQLLSQSLPNDGDEKYEKTIIKSGDQTFYKFMKRIAACQEQI 264

Query: 323 LRYCRSAGAKALW-PTSSGQLSKADIPKCSYCGGPRCFEFQILPQLLFYFGVSNDVDSLD 381
           LRY  S     L  PTS       ++P CS CGG R FEFQ++P L+     +N   S++
Sbjct: 265 LRYSWSGEPLFLTCPTSE----VTELPACSQCGGQRIFEFQLMPALVSMLKSANLGLSVE 320

Query: 382 WATMVVYTCESSC--EANVSYKEEFVWVQ 408
           + T++VYTCE SC    + +  EEF  +Q
Sbjct: 321 FGTILVYTCEKSCWPPNHQTPMEEFCIIQ 349

Over-expression suppresses AP1, CREB, NFAT, and NF-kB transcriptional activation, and delays cell cycle progression at S phase.

Homo sapiens (taxid: 9606)

>sp|Q09787|YA99_SCHPO Uncharacterized protein C13G6.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC13G6.09 PE=4 SV=1

 Score = 72.0 bits (175), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 76/154 (49%), Gaps = 7/154 (4%)

Query: 259 EMINEDESEYDTEMSEVNGQTNALVSKTGVDDTMKSLLDSFEGDSDRRSWATFQEHLAKA 318
           ++I+  E E D E  E N +      K    DT     + +       S+  FQ+ L++A
Sbjct: 113 KLIDSSEIEVDAEPKEENKKEIPEKLKNVKVDTENPSAEPYTKAKGDVSFLKFQKRLSRA 172

Query: 319 PEQVLRYCRSAGAK--ALWPTSSGQLSKADIPKCSYCGGPRCFEFQILPQLLFYFGVSND 376
           P+Q++RY  +   +   LW   + +   + IP C+ CG  R  EFQILP L+    + + 
Sbjct: 173 PDQIMRYYHATSNEFPGLW--CNNECIPSSIPNCA-CGAKRQLEFQILPTLISSMNIDHS 229

Query: 377 V-DSLDWATMVVYTCESSCE-ANVSYKEEFVWVQ 408
             ++LDW  + +Y C +SC+ AN    EE  W+Q
Sbjct: 230 AKNALDWGILSIYVCSASCDLANCGLAEELCWLQ 263

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P87156|TSR4_SCHPO Probable 20S rRNA accumulation protein 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC25H2.15 PE=3 SV=1

 Score = 50.4 bits (119), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 21/118 (17%)

Query: 306 RSWATFQEHLAKAPEQVLRYCRSAGAKALWPTSSGQLS----------KADIPKCSYCGG 355
           +++  F E ++  P Q LRY R  G   L  +   +L           K+ +P C  C  
Sbjct: 283 KTFRLFSEKISHNPTQCLRYER--GGTPLLASGRDKLGQQLKSVTNFGKSPVPLCPLCKS 340

Query: 356 PRCFEFQILPQLLFYFGVSNDVDSLDWATMVVYTCESSCEA-----NVSYKEEFVWVQ 408
           PR FE Q++P  +    + ND +  +W+T++V TC   C        V Y  E+V +Q
Sbjct: 341 PRLFEMQLMPHAI---SILND-EIAEWSTILVATCSMDCNPPINKDRVGYAVEWVGIQ 394

Required for processing of the 20S pre-rRNA at site D to generate mature 18S rRNA.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P25040|TSR4_YEAST 20S rRNA accumulation protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TSR4 PE=1 SV=2

 Score = 48.5 bits (114), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 92/421 (21%), Positives = 156/421 (37%), Gaps = 80/421 (19%)

Query: 40  DEDDGEDEEEQKPVTLGFLEKP-KNRWSLLRHLFPSKAGGPPAWLDPINLPTGRSCLCDM 98
           D DD     +   V L F++ P K    +L     S  GG P WL P + P      C  
Sbjct: 11  DTDDHSYSSKPGDVFLAFVDAPVKETDDILVE--DSFIGGEPKWLHPDSEPPAELLKCGA 68

Query: 99  C--GEPLQFVLQVYAPIIEKESTF-----------------HRTLFLFMCP-------SM 132
           C   + ++ +LQ ++P+ +++ +                   R L++F+C        S+
Sbjct: 69  CKSADNMKLLLQAFSPLDDEQMSAIQQRLGINNMSYINPQDDRVLYVFLCTECQRKGNSV 128

Query: 133 ACLRRDQHEQWKRPPEKASRSVKVFRCQLPRS---NPY--YSSEPPKCNGTDKPSGPGVS 187
            C+R       K+     S S K+    L +    NP+   ++   KCN           
Sbjct: 129 RCIR-----GVKKNKNVDSLSEKMASTSLEKDFQINPFDLSNNSDSKCNAFS-------- 175

Query: 188 LCNWCGTWKGDKVCSSCRRAHYCQQKHQVTHWRSGHKVECQQLNLSSPSSDSNLADA--- 244
             N  G    +   +    ++  Q K +      G K E   ++  +     +L      
Sbjct: 176 -SNPFGGANANPFGADSINSNISQSKDE------GKKKESATVSAKTARKLHDLQKDKEY 228

Query: 245 -GTTSVASNSLWPEYEMINEDESEY---------DTEMSEVNGQTNALVSKTGVDDTMKS 294
            G     S  L+ E E     +  +         D E  ++ G  +       +D   + 
Sbjct: 229 DGNKCFKSCLLYVEEETFKNKKPAHLQLPKNLKIDKEALDLTGDEDLEKDPIKLDPRTEK 288

Query: 295 LLDSFEGDSDRRSWATFQEHLAKAPEQVLRYCRSAGAKALWPTSSGQLSKADIPKCSYC- 353
           L    + D+    +  FQE +   P QVLRY    G K L    +     + +P+  Y  
Sbjct: 289 LSKFLDDDT----FQKFQEVVGYNPLQVLRY--DLGGKPLLYAETKVDILSTVPRPGYNP 342

Query: 354 GGPRCFEFQILPQLLFYFGVSNDVDS-LDWATMVVYTCESSC-----EANVSYKEEFVWV 407
              R FE Q++P+++F       VD+ ++W T++V+T   +      E  V Y EE V V
Sbjct: 343 SSQRIFEMQLMPKMIFDLEEVVSVDNGMEWGTILVFTDVENYMPEFDEHGVGYVEECVKV 402

Query: 408 Q 408
           Q
Sbjct: 403 Q 403

Required for processing of the 20S pre-rRNA at site D to generate mature 18S rRNA.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	415
224068394	400	predicted protein [Populus trichocarpa]	0.942	0.977	0.712	1e-161
297743931	431	unnamed protein product [Vitis vinifera]	0.867	0.835	0.698	1e-152
225437459	411	PREDICTED: programmed cell death protein	0.867	0.875	0.698	1e-151
3377805	446	T2H3.12 [Arabidopsis thaliana] gi|391292	0.978	0.910	0.635	1e-149
18411882	418	MYND type zinc finger and programmed cel	0.978	0.971	0.635	1e-149
255581688	385	pcdc2/rp-8, putative [Ricinus communis]	0.862	0.929	0.689	1e-148
297814089	419	predicted protein [Arabidopsis lyrata su	0.971	0.961	0.635	1e-147
449525545	419	PREDICTED: programmed cell death protein	0.872	0.863	0.674	1e-143
359806731	406	uncharacterized protein LOC100818325 [Gl	0.961	0.982	0.6	1e-142
356542551	408	PREDICTED: LOW QUALITY PROTEIN: programm	0.956	0.973	0.596	1e-141

>gi|224068394|ref|XP_002302735.1| predicted protein [Populus trichocarpa] gi|222844461|gb|EEE82008.1| predicted protein [Populus trichocarpa]

 Score =  575 bits (1483), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 288/404 (71%), Positives = 336/404 (83%), Gaps = 13/404 (3%)

Query: 5   ANGDSIEKLQGLQITPLDDDDEEEREMVAYEYEDDDEDDGEDEEEQKPVTLGFLEKPKNR 64
           A GDS EKL+G+QI+ LD+DDE E  +   E E++ +   + EEE++PVTLGFLEK KN 
Sbjct: 3   AKGDSTEKLKGVQISSLDEDDEVEEVVEEEEEEEEGD---DSEEEEEPVTLGFLEKTKNC 59

Query: 65  WSLLRHLFPSKAGGPPAWLDPINLPTGRSCLCDMCGEPLQFVLQVYAPIIEKESTFHRTL 124
           WSLLR +FPSKAGG PAWLDP+NLP+GRSC+CD+C EPLQF+LQVYAPI EKESTFHRTL
Sbjct: 60  WSLLRQVFPSKAGGVPAWLDPVNLPSGRSCVCDICEEPLQFLLQVYAPITEKESTFHRTL 119

Query: 125 FLFMCPSMACLRRDQHEQWKRPPEKASRSVKVFRCQLPRSNPYYSSEPPKCNGTDKPSGP 184
           F+FMCPSM+CL RDQHEQWKR PEK SRSVKVFRCQLP SNP+YSSEPP+ +GTDKPSG 
Sbjct: 120 FVFMCPSMSCLHRDQHEQWKRSPEKPSRSVKVFRCQLPCSNPFYSSEPPRNDGTDKPSGS 179

Query: 185 GVSLCNWCGTWKGDKVCSSCRRAHYCQQKHQVTHWRSGHKVECQQLNLSSPSSDSNLADA 244
           GVSLCNWCGTWKGDKVCS C+R  YC  KHQV HW SGHK++CQQL+LS  SS       
Sbjct: 180 GVSLCNWCGTWKGDKVCSGCKRTKYCSHKHQVLHWHSGHKIDCQQLSLSVDSS------- 232

Query: 245 GTTSVASNSLWPEYEMINEDESEYDTEMSEVNGQTNALVSKTGVDDTMKSLLDSFEGDSD 304
              S+ SN+LWPEYEMIN+DE+EYD EMS+ N  T++LVS+  +D TM SLLD FEG+SD
Sbjct: 233 ---SIVSNALWPEYEMINDDENEYDAEMSDDNIPTHSLVSRNKMDSTMNSLLDIFEGNSD 289

Query: 305 RRSWATFQEHLAKAPEQVLRYCRSAGAKALWPTSSGQLSKADIPKCSYCGGPRCFEFQIL 364
           ++ WA+FQ+ +AKAPEQVLRYCR+A AK LWP SSGQ SKADIP CSYCGGP  FEFQIL
Sbjct: 290 KKCWASFQQRIAKAPEQVLRYCRNASAKPLWPLSSGQPSKADIPNCSYCGGPSDFEFQIL 349

Query: 365 PQLLFYFGVSNDVDSLDWATMVVYTCESSCEANVSYKEEFVWVQ 408
           PQLL+YFGV ND DSLDWAT+VVYTC+SSCEA+++YKEEF WVQ
Sbjct: 350 PQLLYYFGVKNDADSLDWATIVVYTCKSSCEASMAYKEEFPWVQ 393

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743931|emb|CBI36901.3| unnamed protein product [Vitis vinifera]

 Score =  543 bits (1399), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 255/365 (69%), Positives = 299/365 (81%), Gaps = 5/365 (1%)

Query: 49  EQKPVTLGFLEKPKNRWSLLRHLFPSKAGGPPAWLDPINLPTGRSCLCDMCGEPLQFVLQ 108
           E +PVTLGF+EKPKN WSLL H+FPSKAGG PAWLDPINLP+G+S LCD+C  PLQF+LQ
Sbjct: 66  EAEPVTLGFVEKPKNGWSLLCHMFPSKAGGLPAWLDPINLPSGKSSLCDICQTPLQFLLQ 125

Query: 109 VYAPIIEKESTFHRTLFLFMCPSMACLRRDQHEQWKRPPEKASRSVKVFRCQLPRSNPYY 168
           VYAPI EKESTFHR+LF+FMC SM C+ +D+ EQWK PPEKASRSVKVFRCQLPRSNP+Y
Sbjct: 126 VYAPISEKESTFHRSLFVFMCTSMECILQDKREQWKCPPEKASRSVKVFRCQLPRSNPFY 185

Query: 169 SSEPPKCNGTDKPSGPGVSLCNWCGTWKGDKVCSSCRRAHYCQQKHQVTHWRSGHKVECQ 228
           SSEPP+ +GTDKPSG G  LCNWCGTW GDKVCSSCR+AHYC +KHQV HWRSGHK  C+
Sbjct: 186 SSEPPRGDGTDKPSGIGARLCNWCGTWNGDKVCSSCRKAHYCSEKHQVMHWRSGHKFVCR 245

Query: 229 QLNLSSPSSDSNLADAGTTS-----VASNSLWPEYEMINEDESEYDTEMSEVNGQTNALV 283
           Q+  SS SS+S   +  TTS     VASN+LW EYE+INEDE E+D EMSE NG +++LV
Sbjct: 246 QMKTSSESSNSIPVNNRTTSNKLEKVASNTLWSEYEIINEDECEFDIEMSEDNGYSSSLV 305

Query: 284 SKTGVDDTMKSLLDSFEGDSDRRSWATFQEHLAKAPEQVLRYCRSAGAKALWPTSSGQLS 343
           S    D+T K+LL  FE D D++SW +FQE + KAPEQVLRYCRS  AK +WP SSG+ S
Sbjct: 306 SNDRSDETFKALLKHFEADDDKKSWTSFQECIGKAPEQVLRYCRSPRAKPVWPISSGRPS 365

Query: 344 KADIPKCSYCGGPRCFEFQILPQLLFYFGVSNDVDSLDWATMVVYTCESSCEANVSYKEE 403
           + D PKC YCGGP  FEFQILPQLL+YFGV +DVD LDW+T+ VYTCE+SCEA++SYKEE
Sbjct: 366 QVDAPKCRYCGGPSVFEFQILPQLLYYFGVKDDVDCLDWSTIAVYTCEASCEASLSYKEE 425

Query: 404 FVWVQ 408
           F W+Q
Sbjct: 426 FAWIQ 430

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437459|ref|XP_002269082.1| PREDICTED: programmed cell death protein 2-like [Vitis vinifera]

 Score =  542 bits (1396), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 255/365 (69%), Positives = 299/365 (81%), Gaps = 5/365 (1%)

Query: 49  EQKPVTLGFLEKPKNRWSLLRHLFPSKAGGPPAWLDPINLPTGRSCLCDMCGEPLQFVLQ 108
           E +PVTLGF+EKPKN WSLL H+FPSKAGG PAWLDPINLP+G+S LCD+C  PLQF+LQ
Sbjct: 46  EAEPVTLGFVEKPKNGWSLLCHMFPSKAGGLPAWLDPINLPSGKSSLCDICQTPLQFLLQ 105

Query: 109 VYAPIIEKESTFHRTLFLFMCPSMACLRRDQHEQWKRPPEKASRSVKVFRCQLPRSNPYY 168
           VYAPI EKESTFHR+LF+FMC SM C+ +D+ EQWK PPEKASRSVKVFRCQLPRSNP+Y
Sbjct: 106 VYAPISEKESTFHRSLFVFMCTSMECILQDKREQWKCPPEKASRSVKVFRCQLPRSNPFY 165

Query: 169 SSEPPKCNGTDKPSGPGVSLCNWCGTWKGDKVCSSCRRAHYCQQKHQVTHWRSGHKVECQ 228
           SSEPP+ +GTDKPSG G  LCNWCGTW GDKVCSSCR+AHYC +KHQV HWRSGHK  C+
Sbjct: 166 SSEPPRGDGTDKPSGIGARLCNWCGTWNGDKVCSSCRKAHYCSEKHQVMHWRSGHKFVCR 225

Query: 229 QLNLSSPSSDSNLADAGTTS-----VASNSLWPEYEMINEDESEYDTEMSEVNGQTNALV 283
           Q+  SS SS+S   +  TTS     VASN+LW EYE+INEDE E+D EMSE NG +++LV
Sbjct: 226 QMKTSSESSNSIPVNNRTTSNKLEKVASNTLWSEYEIINEDECEFDIEMSEDNGYSSSLV 285

Query: 284 SKTGVDDTMKSLLDSFEGDSDRRSWATFQEHLAKAPEQVLRYCRSAGAKALWPTSSGQLS 343
           S    D+T K+LL  FE D D++SW +FQE + KAPEQVLRYCRS  AK +WP SSG+ S
Sbjct: 286 SNDRSDETFKALLKHFEADDDKKSWTSFQECIGKAPEQVLRYCRSPRAKPVWPISSGRPS 345

Query: 344 KADIPKCSYCGGPRCFEFQILPQLLFYFGVSNDVDSLDWATMVVYTCESSCEANVSYKEE 403
           + D PKC YCGGP  FEFQILPQLL+YFGV +DVD LDW+T+ VYTCE+SCEA++SYKEE
Sbjct: 346 QVDAPKCRYCGGPSVFEFQILPQLLYYFGVKDDVDCLDWSTIAVYTCEASCEASLSYKEE 405

Query: 404 FVWVQ 408
           F W+Q
Sbjct: 406 FAWIQ 410

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3377805|gb|AAC28178.1| T2H3.12 [Arabidopsis thaliana] gi|3912928|gb|AAC78712.1| putative zinc finger protein [Arabidopsis thaliana] gi|7268982|emb|CAB80715.1| putative zinc finger protein identical to T10M13.22 [Arabidopsis thaliana]

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 261/411 (63%), Positives = 321/411 (78%), Gaps = 5/411 (1%)

Query: 3   SGANGDSIEKLQGLQITPLDDDDEEEREMVAYEYEDDDEDDGEDEEEQKPVTLGFLEKPK 62
           S  NGDS++  +GL+IT LDDDD++E  +     ++ D+DD ED+E+ +PV LGF+E PK
Sbjct: 30  SSFNGDSMDDFKGLRITQLDDDDDDETAVEPINMDEFDDDDEEDDEDYEPVMLGFVESPK 89

Query: 63  NRWSLLRHLFPSKAGGPPAWLDPINLPTGRSCLCDMCGEPLQFVLQVYAPIIEKESTFHR 122
             WS LR LFP+ AGG PAWLDP+NLP+G+S LCD+C EP+QFVLQ+YAP+ +KES FHR
Sbjct: 90  FAWSNLRQLFPNLAGGVPAWLDPVNLPSGKSILCDLCEEPMQFVLQLYAPLTDKESAFHR 149

Query: 123 TLFLFMCPSMACLRRDQHEQWKRPPEKASRSVKVFRCQLPRSNPYYSSEPPKCNGTDKPS 182
           TLFLFMCPSM+CL RDQHEQWKR PEKA RS KVFRCQLPR+NP+YSSE PK +GTDKP 
Sbjct: 150 TLFLFMCPSMSCLLRDQHEQWKRAPEKAMRSTKVFRCQLPRANPFYSSEAPKHDGTDKPL 209

Query: 183 GPGVSLCNWCGTWKGDKVCSSCRRAHYCQQKHQVTHWRSGHKVECQQLNLSSPSSDSNLA 242
           G G  LC WCGTWKGDK+CS C+ A YC  KHQ  HWR GHK ECQQL   S +SDS   
Sbjct: 210 GHGAPLCTWCGTWKGDKLCSGCKNARYCSPKHQALHWRLGHKTECQQLRTVSETSDSGPV 269

Query: 243 DAGTT-----SVASNSLWPEYEMINEDESEYDTEMSEVNGQTNALVSKTGVDDTMKSLLD 297
           + G        VAS SLW E+ +INEDESEYDTEMS  +     LVSK  VDD MKSL++
Sbjct: 270 NNGVAPTEKQKVASKSLWKEFVLINEDESEYDTEMSGDDEVAKPLVSKREVDDQMKSLMN 329

Query: 298 SFEGDSDRRSWATFQEHLAKAPEQVLRYCRSAGAKALWPTSSGQLSKADIPKCSYCGGPR 357
            FEGD+D+++W  FQ+ + KAPEQVLRY RS+GAK LWP +SG++SK+++P C  CGGPR
Sbjct: 330 DFEGDADKKNWVNFQQRVDKAPEQVLRYSRSSGAKPLWPIASGRVSKSELPSCKSCGGPR 389

Query: 358 CFEFQILPQLLFYFGVSNDVDSLDWATMVVYTCESSCEANVSYKEEFVWVQ 408
           CFEFQ++PQLLF+FG  N+ +SLDWAT+VVYTCE+SC++++SYKEEFVWVQ
Sbjct: 390 CFEFQVMPQLLFFFGGKNERESLDWATIVVYTCENSCDSSLSYKEEFVWVQ 440

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18411882|ref|NP_567225.1| MYND type zinc finger and programmed cell death 2 C-terminal domain-containing protein [Arabidopsis thaliana] gi|14334912|gb|AAK59634.1| putative zinc finger protein [Arabidopsis thaliana] gi|15810627|gb|AAL07201.1| putative zinc finger protein [Arabidopsis thaliana] gi|332656742|gb|AEE82142.1| MYND type zinc finger and programmed cell death 2 C-terminal domain-containing protein [Arabidopsis thaliana]

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 261/411 (63%), Positives = 321/411 (78%), Gaps = 5/411 (1%)

Query: 3   SGANGDSIEKLQGLQITPLDDDDEEEREMVAYEYEDDDEDDGEDEEEQKPVTLGFLEKPK 62
           S  NGDS++  +GL+IT LDDDD++E  +     ++ D+DD ED+E+ +PV LGF+E PK
Sbjct: 2   SSFNGDSMDDFKGLRITQLDDDDDDETAVEPINMDEFDDDDEEDDEDYEPVMLGFVESPK 61

Query: 63  NRWSLLRHLFPSKAGGPPAWLDPINLPTGRSCLCDMCGEPLQFVLQVYAPIIEKESTFHR 122
             WS LR LFP+ AGG PAWLDP+NLP+G+S LCD+C EP+QFVLQ+YAP+ +KES FHR
Sbjct: 62  FAWSNLRQLFPNLAGGVPAWLDPVNLPSGKSILCDLCEEPMQFVLQLYAPLTDKESAFHR 121

Query: 123 TLFLFMCPSMACLRRDQHEQWKRPPEKASRSVKVFRCQLPRSNPYYSSEPPKCNGTDKPS 182
           TLFLFMCPSM+CL RDQHEQWKR PEKA RS KVFRCQLPR+NP+YSSE PK +GTDKP 
Sbjct: 122 TLFLFMCPSMSCLLRDQHEQWKRAPEKAMRSTKVFRCQLPRANPFYSSEAPKHDGTDKPL 181

Query: 183 GPGVSLCNWCGTWKGDKVCSSCRRAHYCQQKHQVTHWRSGHKVECQQLNLSSPSSDSNLA 242
           G G  LC WCGTWKGDK+CS C+ A YC  KHQ  HWR GHK ECQQL   S +SDS   
Sbjct: 182 GHGAPLCTWCGTWKGDKLCSGCKNARYCSPKHQALHWRLGHKTECQQLRTVSETSDSGPV 241

Query: 243 DAGTT-----SVASNSLWPEYEMINEDESEYDTEMSEVNGQTNALVSKTGVDDTMKSLLD 297
           + G        VAS SLW E+ +INEDESEYDTEMS  +     LVSK  VDD MKSL++
Sbjct: 242 NNGVAPTEKQKVASKSLWKEFVLINEDESEYDTEMSGDDEVAKPLVSKREVDDQMKSLMN 301

Query: 298 SFEGDSDRRSWATFQEHLAKAPEQVLRYCRSAGAKALWPTSSGQLSKADIPKCSYCGGPR 357
            FEGD+D+++W  FQ+ + KAPEQVLRY RS+GAK LWP +SG++SK+++P C  CGGPR
Sbjct: 302 DFEGDADKKNWVNFQQRVDKAPEQVLRYSRSSGAKPLWPIASGRVSKSELPSCKSCGGPR 361

Query: 358 CFEFQILPQLLFYFGVSNDVDSLDWATMVVYTCESSCEANVSYKEEFVWVQ 408
           CFEFQ++PQLLF+FG  N+ +SLDWAT+VVYTCE+SC++++SYKEEFVWVQ
Sbjct: 362 CFEFQVMPQLLFFFGGKNERESLDWATIVVYTCENSCDSSLSYKEEFVWVQ 412

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581688|ref|XP_002531647.1| pcdc2/rp-8, putative [Ricinus communis] gi|223528732|gb|EEF30743.1| pcdc2/rp-8, putative [Ricinus communis]

 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 251/364 (68%), Positives = 292/364 (80%), Gaps = 6/364 (1%)

Query: 50  QKPVTLGFLEKPKNRWSLLRHLFPSKAGGPPAWLDPINLPTGRSCLCDMCGEPLQFVLQV 109
           Q+PVTLGF+EKP+N WSL R LFPSKAGG PAW+DPINLP+G+S LCD+CG+PLQF+LQV
Sbjct: 14  QEPVTLGFVEKPRNCWSLSRQLFPSKAGGVPAWMDPINLPSGKSNLCDICGDPLQFLLQV 73

Query: 110 YAPIIEKESTFHRTLFLFMCPSMACLRRDQHEQWKRPPEKASRSVKVFRCQLPRSNPYYS 169
           YAP+  KESTFHRT+F+FMCPSM+CL RDQHEQWKR PEK SRSVKVFRCQLPR NP+YS
Sbjct: 74  YAPVSGKESTFHRTIFVFMCPSMSCLLRDQHEQWKRKPEKPSRSVKVFRCQLPRCNPFYS 133

Query: 170 SEPPKCNGTDKPSGPGVSLCNWCGTWKGDKVCSSCRRAHYCQQKHQVTHWRSGHKVECQQ 229
           SEP   NGTDKPS  G  LC WCGTWKGDK+CS C+ A YC QKHQV HW +GHK++CQ 
Sbjct: 134 SEPSMHNGTDKPSTSGAMLCKWCGTWKGDKLCSKCKSARYCSQKHQVMHWCAGHKIDCQL 193

Query: 230 LNLSSP-----SSDSNLADAGTTSVASNSLWPEYEMINEDESEYDTEMSEVNGQTNALVS 284
            +LS       SS+  +A       ASN +WPEYE+INEDESE+D E+S+ NG  N+L+S
Sbjct: 194 ESLSCSLVDPNSSNDEIALEERNKFASNIVWPEYEVINEDESEFDDEISDSNGHDNSLIS 253

Query: 285 KTGVDDTMKSLLDSFEGDSDRRSWATFQEHLAKAPEQVLRYCRSAGAKALWPTSSGQLSK 344
           K   DDT+K L +SFEGDSDR+  A FQ  +AKAPEQVLRYCR+A AK +WP SSGQ SK
Sbjct: 254 KNKADDTLK-LFNSFEGDSDRKCLAAFQNRIAKAPEQVLRYCRNASAKPIWPMSSGQPSK 312

Query: 345 ADIPKCSYCGGPRCFEFQILPQLLFYFGVSNDVDSLDWATMVVYTCESSCEANVSYKEEF 404
           ADIP C +CGGP  FEFQ+LPQLL+YFGV ND DSLDWAT+ VYTC  SCE++VSYKEEF
Sbjct: 313 ADIPNCYHCGGPLIFEFQVLPQLLYYFGVKNDADSLDWATIAVYTCGESCESSVSYKEEF 372

Query: 405 VWVQ 408
            WVQ
Sbjct: 373 AWVQ 376

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297814089|ref|XP_002874928.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297320765|gb|EFH51187.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  529 bits (1362), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 260/409 (63%), Positives = 319/409 (77%), Gaps = 6/409 (1%)

Query: 6   NGDSIEKLQGLQITPLDDDDEEEREMVAYEYEDDDEDDGEDEEEQ-KPVTLGFLEKPKNR 64
           N DS++  +GL+IT LDDDD++E  +     ++ D+DD E+++E  +PV LGF+E PK  
Sbjct: 5   NRDSMDDFKGLRITQLDDDDDDETAVEPTNMDEFDDDDDEEDDEDYEPVMLGFVESPKFT 64

Query: 65  WSLLRHLFPSKAGGPPAWLDPINLPTGRSCLCDMCGEPLQFVLQVYAPIIEKESTFHRTL 124
           WS LR LFP+ AGG PAWLDP+NLP+G+S LCD+C EP+QFVLQ+YAP+ +KES FHRTL
Sbjct: 65  WSNLRQLFPNLAGGVPAWLDPVNLPSGKSILCDLCEEPMQFVLQLYAPLTDKESAFHRTL 124

Query: 125 FLFMCPSMACLRRDQHEQWKRPPEKASRSVKVFRCQLPRSNPYYSSEPPKCNGTDKPSGP 184
           FLFMCPSM+CL RDQHEQWKR PEKA RS KVFRCQLPR NP+YSSE PK +GTDKP G 
Sbjct: 125 FLFMCPSMSCLLRDQHEQWKRAPEKAMRSTKVFRCQLPRVNPFYSSEAPKHDGTDKPVGD 184

Query: 185 GVSLCNWCGTWKGDKVCSSCRRAHYCQQKHQVTHWRSGHKVECQQLNLSSPSSDSNLADA 244
           G  LC WCGTWKGDK+CS C+ A YC QKHQ  HWR GHK ECQQL     +S+S   + 
Sbjct: 185 GAPLCTWCGTWKGDKLCSGCKGARYCSQKHQALHWRLGHKTECQQLRTVIETSESGRVNN 244

Query: 245 GTT-----SVASNSLWPEYEMINEDESEYDTEMSEVNGQTNALVSKTGVDDTMKSLLDSF 299
           G        VAS SLW E+ MINEDESEYDTEMS  +     LVSK  VDD MKSL++ F
Sbjct: 245 GVALTQKQKVASKSLWKEFVMINEDESEYDTEMSGDDEIAKPLVSKREVDDQMKSLMNDF 304

Query: 300 EGDSDRRSWATFQEHLAKAPEQVLRYCRSAGAKALWPTSSGQLSKADIPKCSYCGGPRCF 359
           EGD+D+++W  FQ+ +AKAPEQVLRY RS+GAK LWP +SG++SK+++P C  CGGPRCF
Sbjct: 305 EGDADKKTWVNFQQRVAKAPEQVLRYSRSSGAKPLWPIASGRVSKSELPNCKSCGGPRCF 364

Query: 360 EFQILPQLLFYFGVSNDVDSLDWATMVVYTCESSCEANVSYKEEFVWVQ 408
           EFQ++PQLLF+FG  ND +SLDWAT+VVYTCE+SC++++SYKEEFVWVQ
Sbjct: 365 EFQVMPQLLFFFGGKNDRESLDWATIVVYTCENSCDSSLSYKEEFVWVQ 413

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449525545|ref|XP_004169777.1| PREDICTED: programmed cell death protein 2-like [Cucumis sativus]

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 247/366 (67%), Positives = 295/366 (80%), Gaps = 4/366 (1%)

Query: 53  VTLGFLEKPKNRWSLLRHLFPSKAGGPPAWLDPINLPTGRSCLCDMCGEPLQFVLQVYAP 112
           V LGF+  PKN WSLL  LFPSKAGG PAWLDP+NLP+GRSCLCD+CGEPLQF++Q+YAP
Sbjct: 51  VVLGFVTNPKNSWSLLPQLFPSKAGGVPAWLDPVNLPSGRSCLCDICGEPLQFLIQIYAP 110

Query: 113 IIEKESTFHRTLFLFMCPSMACLRRDQHEQWKRPPEKASRSVKVFRCQLPRSNPYYSSEP 172
           I+EK+STFHRTLF+FMCPSM CL RDQHEQWK   EK+SRSVKVFR QLPR+NP+YSSEP
Sbjct: 111 IVEKDSTFHRTLFVFMCPSMICLLRDQHEQWKSKSEKSSRSVKVFRGQLPRNNPFYSSEP 170

Query: 173 PKCNGTDKPSGPGVSLCNWCGTWKGDKVCSSCRRAHYCQQKHQVTHWRSGHKVECQQLNL 232
           PK +G+DK    GV+ C WCGTWKGDKVCS CR   YC +KHQ THWR+GHK +CQ++ +
Sbjct: 171 PKHDGSDKLCQSGVARCTWCGTWKGDKVCSKCRTVRYCSEKHQATHWRTGHKTDCQRMCM 230

Query: 233 ----SSPSSDSNLADAGTTSVASNSLWPEYEMINEDESEYDTEMSEVNGQTNALVSKTGV 288
               SS S  +N  +     V+S  LWPE+E+++E ESE+D E+S+ N   NALV K  +
Sbjct: 231 SSQLSSSSLTNNHHETDNEKVSSKHLWPEFEIMHEYESEFDIEISQDNSYANALVCKDRM 290

Query: 289 DDTMKSLLDSFEGDSDRRSWATFQEHLAKAPEQVLRYCRSAGAKALWPTSSGQLSKADIP 348
           DD+MKSLL  FEGD DR+SWA+FQ  ++KAPEQVLRYCR  G+K LWPTSSG  SKADIP
Sbjct: 291 DDSMKSLLAKFEGDDDRKSWASFQARISKAPEQVLRYCRDVGSKPLWPTSSGLPSKADIP 350

Query: 349 KCSYCGGPRCFEFQILPQLLFYFGVSNDVDSLDWATMVVYTCESSCEANVSYKEEFVWVQ 408
           KC+YCGGP C+EFQILPQLL+YFGV NDVDSLDWAT+VVY CE+SCE+N++Y EEF WVQ
Sbjct: 351 KCNYCGGPMCYEFQILPQLLYYFGVKNDVDSLDWATIVVYACEASCESNIAYNEEFAWVQ 410

Query: 409 HSLSSV 414
            S+ S 
Sbjct: 411 LSVPSA 416

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806731|ref|NP_001241040.1| uncharacterized protein LOC100818325 [Glycine max] gi|255645769|gb|ACU23377.1| unknown [Glycine max]

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 252/420 (60%), Positives = 319/420 (75%), Gaps = 21/420 (5%)

Query: 1   MESGANGDSIEKLQGLQITPLDDDDEEEREMVAYEYEDDDEDDGEDEEEQKPVTLGFLEK 60
           M++ A GD ++KL+ +Q    +DD E + E   ++         E+EEE  P+TLGF++K
Sbjct: 1   MDTDATGDPVDKLKAIQ----NDDVEYQDEDDDFD--------DEEEEEDDPITLGFVDK 48

Query: 61  PKNRWSLLRHLFPSKAGGPPAWLDPINLPTGRSCLCDMCGEPLQFVLQVYAPIIEKESTF 120
           PKN WSL R  FPSK GG PAWLDP+N+P+GRS +CD+CG+PLQ +LQVYAP  +KE+TF
Sbjct: 49  PKNEWSLRRQYFPSKTGGVPAWLDPLNIPSGRSSVCDICGDPLQLLLQVYAPT-DKETTF 107

Query: 121 HRTLFLFMCPSMACLRRDQHEQWKRPPEKASRSVKVFRCQLPRSNPYYSSEPPKCNGTDK 180
           HR LF+FMCPSM CL RDQHEQWKR PEK SRSVKVFRCQLPR NP+YS E P+ N + +
Sbjct: 108 HRMLFVFMCPSMKCLLRDQHEQWKRHPEKPSRSVKVFRCQLPRINPFYSPECPQYNESHE 167

Query: 181 PSGPGVSLCNWCGTWKGDKVCSSCRRAHYCQQKHQVTHWRSGHKVECQQLNLSSPSSDSN 240
           P+G G +LC+WCGTWKGDK+CSSCR+A YC +KHQ   WR+GHK  CQQ+ +SSP    N
Sbjct: 168 PAGSGAALCDWCGTWKGDKLCSSCRQARYCSEKHQAMSWRTGHKTACQQMKVSSPVFGPN 227

Query: 241 LADAGTTS-----VASNSLWPEYEMINEDESEYDTEMSEVNGQTNALVSKTGVDDTMKSL 295
              +GTTS     V S +LWPE+E+  EDESEY+ ++SE N   N+L+S+   DDTM SL
Sbjct: 228 --KSGTTSLESHKVGSKNLWPEFEISIEDESEYNRDISEENSLANSLISRNRNDDTMNSL 285

Query: 296 LDSFEGDSDRRSWATFQEHLAKAPEQVLRYCRSAGAKALWPTSSGQLSKADIPKCSYCGG 355
           +D+F+GD D++SWA+FQE +A+APEQVLRY R+  AK +WP SSG+ S ADIPKCSYC G
Sbjct: 286 MDNFKGDDDKKSWASFQERIAEAPEQVLRYYRNTNAKPIWPVSSGRPSNADIPKCSYCSG 345

Query: 356 PRCFEFQILPQLLFYFGVSNDVDSLDWATMVVYTCESSCEANVSYKEEFVWVQ-HSLSSV 414
           P   EFQILPQLL+YFGV N+VDSLDWA++VVY CE+SCEA++ YK EF WVQ +SLS+ 
Sbjct: 346 PMSCEFQILPQLLYYFGVDNEVDSLDWASIVVYACEASCEASLPYKNEFAWVQIYSLSTT 405

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542551|ref|XP_003539730.1| PREDICTED: LOW QUALITY PROTEIN: programmed cell death protein 2-like [Glycine max]

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 245/411 (59%), Positives = 314/411 (76%), Gaps = 14/411 (3%)

Query: 1   MESGANGDSIEKLQGLQITPLDDDDEEEREMVAYEYEDDDEDDGEDEEEQKPVTLGFLEK 60
           M++ A GD ++KL+ +Q     +D+ E+++          +DD +D+EE +P+TLGF++K
Sbjct: 1   MDTDAIGDLVDKLKAIQ-----NDNVEDQDQDDDF-----DDDDDDDEEHEPITLGFVDK 50

Query: 61  PKNRWSLLRHLFPSKAGGPPAWLDPINLPTGRSCLCDMCGEPLQFVLQVYAPIIEKESTF 120
           PKN WSL R  FPSKAGG PAWLDP+N+P+G S +CD CG+PLQF+LQVYAP  EKE+TF
Sbjct: 51  PKNNWSLRRQYFPSKAGGVPAWLDPLNIPSGGSFVCDNCGDPLQFLLQVYAPT-EKETTF 109

Query: 121 HRTLFLFMCPSMACLRRDQHEQWKRPPEKASRSVKVFRCQLPRSNPYYSSEPPKCNGTDK 180
           HR LF+FMCPSM CL RDQHEQWKR PEK S+S+KVFRCQLPR+NP+YS E P+ N + K
Sbjct: 110 HRMLFVFMCPSMKCLLRDQHEQWKRHPEKPSKSLKVFRCQLPRANPFYSPECPQYNKSHK 169

Query: 181 PSGPGVSLCNWCGTWKGDKVCSSCRRAHYCQQKHQVTHWRSGHKVECQQLNLSSPSSDSN 240
           P+G G +LC+WCGTWKGDK+CS CR+A YC +KHQV  WR+GHK+ CQQ+ +SSP S  N
Sbjct: 170 PAGSGAALCDWCGTWKGDKLCSGCRQARYCSEKHQVMSWRTGHKIACQQMKVSSPVSGPN 229

Query: 241 ---LADAGTTSVASNSLWPEYEMINEDESEYDTEMSEVNGQTNALVSKTGVDDTMKSLLD 297
               A   +  V S +LWPE+E+  EDES+Y  +MSE N   N+L+S+   DDTM SLLD
Sbjct: 230 KSGTASLDSHKVGSKNLWPEFEITIEDESDYKRDMSEENTLANSLISRNRTDDTMNSLLD 289

Query: 298 SFEGDSDRRSWATFQEHLAKAPEQVLRYCRSAGAKALWPTSSGQLSKADIPKCSYCGGPR 357
           +F+GD D++SWA+FQ+ +AKAPEQVLRY R+  AK +WP SS   S ADIP CSYC GP 
Sbjct: 290 NFQGDDDKKSWASFQQCIAKAPEQVLRYYRNTNAKPIWPVSSDLPSNADIPSCSYCTGPM 349

Query: 358 CFEFQILPQLLFYFGVSNDVDSLDWATMVVYTCESSCEANVSYKEEFVWVQ 408
           C EFQILPQLL+YFGV N++DSLD A++VVY CE+SCEA++SYK EF W+Q
Sbjct: 350 CCEFQILPQLLYYFGVDNEMDSLDXASIVVYACEASCEASLSYKHEFAWIQ 400

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	415
TAIR|locus:2137844	418	AT4G02220 [Arabidopsis thalian	0.978	0.971	0.603	3.4e-141
WB|WBGene00011116	386	pdcd-2 [Caenorhabditis elegans	0.395	0.424	0.393	2.3e-44
DICTYBASE|DDB_G0284069	426	DDB_G0284069 "Programmed cell	0.587	0.572	0.255	5.5e-40
UNIPROTKB|F1NEA8	308	PDCD2 "Uncharacterized protein	0.645	0.870	0.345	2.1e-38
ZFIN|ZDB-GENE-040426-1236	358	pdcd2 "programmed cell death 2	0.575	0.667	0.349	4.3e-38
RGD|61887	343	Pdcd2 "programmed cell death 2	0.575	0.696	0.352	8.9e-38
UNIPROTKB|I3L6K4	250	PDCD2 "Uncharacterized protein	0.571	0.948	0.366	1e-36
UNIPROTKB|Q2YDC9	344	PDCD2 "Programmed cell death p	0.563	0.680	0.359	1.7e-36
MGI|MGI:104643	343	Pdcd2 "programmed cell death 2	0.575	0.696	0.352	2.1e-36
UNIPROTKB|J9P5I3	343	PDCD2 "Uncharacterized protein	0.595	0.720	0.355	9.2e-36

TAIR|locus:2137844 AT4G02220 [Arabidopsis thaliana (taxid:3702)]

 Score = 1381 (491.2 bits), Expect = 3.4e-141, P = 3.4e-141
 Identities = 248/411 (60%), Positives = 298/411 (72%)

Query:     3 SGANGDSIEKLQGLQITPLDDXXXXXXXXXXXXXXXXXXXXXXXXXXQKPVTLGFLEKPK 62
             S  NGDS++  +GL+IT LDD                           +PV LGF+E PK
Sbjct:     2 SSFNGDSMDDFKGLRITQLDDDDDDETAVEPINMDEFDDDDEEDDEDYEPVMLGFVESPK 61

Query:    63 NRWSLLRHLFPSKAGGPPAWLDPINLPTGRSCLCDMCGEPLQFVLQVYAPIIEKESTFHR 122
               WS LR LFP+ AGG PAWLDP+NLP+G+S LCD+C EP+QFVLQ+YAP+ +KES FHR
Sbjct:    62 FAWSNLRQLFPNLAGGVPAWLDPVNLPSGKSILCDLCEEPMQFVLQLYAPLTDKESAFHR 121

Query:   123 TLFLFMCPSMACLRRDQHEQWKRPPEKASRSVKVFRCQLPRSNPYYSSEPPKCNGTDKPS 182
             TLFLFMCPSM+CL RDQHEQWKR PEKA RS KVFRCQLPR+NP+YSSE PK +GTDKP 
Sbjct:   122 TLFLFMCPSMSCLLRDQHEQWKRAPEKAMRSTKVFRCQLPRANPFYSSEAPKHDGTDKPL 181

Query:   183 GPGVSLCNWCGTWKGDKVCSSCRRAHYCQQKHQVTHWRSGHKVECQQLXXXXXXXXXXXX 242
             G G  LC WCGTWKGDK+CS C+ A YC  KHQ  HWR GHK ECQQL            
Sbjct:   182 GHGAPLCTWCGTWKGDKLCSGCKNARYCSPKHQALHWRLGHKTECQQLRTVSETSDSGPV 241

Query:   243 XXGTT-----SVASNSLWPEYEMINEDESEYDTEMSEVNGQTNALVSKTGVDDTMKSLLD 297
               G        VAS SLW E+ +INEDESEYDTEMS  +     LVSK  VDD MKSL++
Sbjct:   242 NNGVAPTEKQKVASKSLWKEFVLINEDESEYDTEMSGDDEVAKPLVSKREVDDQMKSLMN 301

Query:   298 SFEGDSDRRSWATFQEHLAKAPEQVLRYCRSAGAKALWPTSSGQLSKADIPKCSYCGGPR 357
              FEGD+D+++W  FQ+ + KAPEQVLRY RS+GAK LWP +SG++SK+++P C  CGGPR
Sbjct:   302 DFEGDADKKNWVNFQQRVDKAPEQVLRYSRSSGAKPLWPIASGRVSKSELPSCKSCGGPR 361

Query:   358 CFEFQILPQLLFYFGVSNDVDSLDWATMVVYTCESSCEANVSYKEEFVWVQ 408
             CFEFQ++PQLLF+FG  N+ +SLDWAT+VVYTCE+SC++++SYKEEFVWVQ
Sbjct:   362 CFEFQVMPQLLFFFGGKNERESLDWATIVVYTCENSCDSSLSYKEEFVWVQ 412

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

WB|WBGene00011116 pdcd-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 311 (114.5 bits), Expect = 2.3e-44, Sum P(2) = 2.3e-44
 Identities = 74/188 (39%), Positives = 102/188 (54%)

Query:    51 KPVTLGF-LE-KPKNRWSLLRHLFP-SKAGGPPAWLDPINLPTGRSCLCDMCGEPLQFVL 107
             +PV LGF ++ +P + + L     P  K GG P+WL+P NLP     LC++C +PL F++
Sbjct:     8 EPVNLGFGVQFEPDDLYRLRSQFLPLGKIGGKPSWLNPKNLPKSADLLCNVCEKPLCFLM 67

Query:   108 QVYAP--IIEKESTFHRTLFLFMCPSMACLRRDQHEQWKRPPEKASRSVKVFRCQLPRSN 165
             QV A   I +    FHR+LFLF+C + +C R +            + ++K FRCQLPR+N
Sbjct:    68 QVSANGGINDPPHAFHRSLFLFVCRNPSCSRTND-----------AANLKAFRCQLPRAN 116

Query:   166 PYYSSEPPKCNGTD----KPSGP--GVSLCNWCGTWKGDKVCSSCRRAHYCQQKHQVTHW 219
              YYS + P     D     P  P  G  LC  CG     K C+ C+ A YC Q HQV  W
Sbjct:   117 DYYSFDGPMDPDLDGDVADPRAPADGPGLCRICGC-SAAKKCAKCQVARYCSQAHQVIDW 175

Query:   220 RSGHKVEC 227
              + HK+EC
Sbjct:   176 PA-HKLEC 182

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

DICTYBASE|DDB_G0284069 DDB_G0284069 "Programmed cell death protein 2" [Dictyostelium discoideum (taxid:44689)]

 Score = 265 (98.3 bits), Expect = 5.5e-40, Sum P(2) = 5.5e-40
 Identities = 65/254 (25%), Positives = 110/254 (43%)

Query:    53 VTLGFLEKPKNRWSLLRHLFPSKAGGPPAWLDPINLPTGRSCLCDMCGEPLQFVLQVYAP 112
             V LGF E+  ++  L  + FP+K GG PAWLD  N+P     +C+ C + + F++Q+YAP
Sbjct:     4 VVLGFTEQDFDKSQLTSNYFPTKVGGKPAWLDLSNIPKKEELVCEKCSKQVSFLMQIYAP 63

Query:   113 IIEKESTFHRTLFLFMCPSMACLRRDQHEQWKRPPEKASRSVKVFRCQLPRSNPYYSSEP 172
             I EKE +FHR + +F C    C     +   +    + +    +   +      Y     
Sbjct:    64 IDEKEESFHRMIHIFCCKDPRC---GYYIAIRTQLPQINDFYPMDADERKYDQDYNDIYK 120

Query:   173 PKCNGTDKPSGPGVSLCNWCGTWKGDKVCSSCRRAHYCQQKHQVTHWRSGHKVECQQLXX 232
              +   T        + C +CG +     CS C++ HYC ++HQ   W+ GH  +C+ L  
Sbjct:   121 NQLQYTKNRQ----NTCEYCGCFAKSN-CSGCKKVHYCGKEHQQLDWQLGHSEQCKLLKD 175

Query:   233 XXXXXXXXXXXXGTT--SVASNSLWPEYEMINEDESEYDTEMSEVNGQTNALVSKTGVDD 290
                                AS  L+ E ++I E++   +   +  N   N   +    +D
Sbjct:   176 INDDNDNSGDNDKKLPRKRASEFLFKELDIITENQELKEFPPTNDNSNNNNNNNNNDNND 235

Query:   291 TMKSLLDSFEGDSD 304
                   D ++ D+D
Sbjct:   236 NDNDNDDEYDDDND 249

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1NEA8 PDCD2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 108/313 (34%), Positives = 146/313 (46%)

Query:   120 FHRTLFLFMCPSMACLRRDQHEQWKRPPEKASRSVKVFRCQLPRSNPYYSSEPPKCNGTD 179
             FHRTLF+F C   AC R          P      +  FR QLPR N  Y  EPP      
Sbjct:     4 FHRTLFVFACRGAACYRL---------PGPGG-PLCAFRSQLPRRNATYPEEPPSEEPPP 53

Query:   180 KPSG-P-----GVSLCNWCGTWKGDKVCSSCRRAHYCQQKHQVTHWRSGHKVECQQLXXX 233
              P   P     G +LC  CG   G + C  CRRA YC  +HQ   WR GH+  C +    
Sbjct:    54 LPEPFPRRLRSGAALCRVCGC-PGPRACGRCRRAAYCGPEHQALDWRRGHRRSCGR---- 108

Query:   234 XXXXXXXXXXXGTTSVASNSLWPEYEMINE-DESEY--------DTEMSEVNG------Q 278
                              +  L+PEYE++ E +E E+        D E   V+       Q
Sbjct:   109 ---GGDADATDDAEPDHNEFLFPEYEILIEPEEPEFPADSSVDPDDEKGAVDASKKLEKQ 165

Query:   279 TNALVSKT---GVDDTMKSLLDSFEGDSDRRSWATFQEHLAKAPEQVLRYCRSAGAKALW 335
               + V+ T    +D+     +   E + D+  + TF++ +   PEQ++RYCR  G   +W
Sbjct:   166 EESRVTSTTSEALDEETLEAMAKHETEEDK-IFRTFKDRITAEPEQIIRYCRG-GEGPIW 223

Query:   336 PTSSGQLSKADIPKCSYCGGPRCFEFQILPQLLFYFGVSNDVDSLDWATMVVYTCESSCE 395
              +      + DIP CS CG  R FEFQI+PQLL +  V +  +S+DW T+VVYTC  +C 
Sbjct:   224 VSGENIPEEKDIPSCS-CGAKRVFEFQIMPQLLNHLKVDSLGESIDWGTLVVYTCAENCG 282

Query:   396 ANVSYKEEFVWVQ 408
             A   Y EEF+W Q
Sbjct:   283 AENKYAEEFIWKQ 295

GO:0005737 "cytoplasm" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-040426-1236 pdcd2 "programmed cell death 2" [Danio rerio (taxid:7955)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 94/269 (34%), Positives = 138/269 (51%)

Query:   151 SRSVKVFRCQLPRSNPYYSSEPPKCNGTDKPS------GPGVSLCNWCGTWKGDKVCSSC 204
             S+  KVFR QLPR N +Y   PP     ++P       G G+ LC  CG   G K CS C
Sbjct:   101 SKCFKVFRSQLPRKNEFYPFNPPPDEKPEQPVHDAQVLGSGLKLCRLCGCL-GQKACSRC 159

Query:   205 RRAHYCQQKHQVTHWRSGHKVECQQLXXXXXXXXXXXXXXGTTSVASNS-LWPEYEMINE 263
                 YC ++HQ T W+  HK EC                    S   NS L+PE+E++ E
Sbjct:   160 HSVTYCCKEHQTTDWKQRHKKEC-------------LAEASQVSRELNSFLFPEWELVTE 206

Query:   264 DE---SEYDTEMSEVNGQTNALVSKTGVDDT-MKSLLDSFEGDSDRRSWATFQEHLAKAP 319
              E   ++ + + S    Q N     +G++D+ ++S+  +     D + +  F++ +A  P
Sbjct:   207 PEVIPAKDELQESPSLDQENIASLNSGLEDSELESM--ALHETLDSKVFQKFKQGIANEP 264

Query:   320 EQVLRYCRSAGAKALWPTSSGQLSKADIPKCSYCGGPRCFEFQILPQLLFYFGVSNDVDS 379
             +QVLRYCR  G   LW T+     + ++P+C+ CG  R FEFQI+PQLL +  V +   S
Sbjct:   265 QQVLRYCR--GGSPLWVTAEHVPREEEVPECT-CGAKRLFEFQIMPQLLNHLKVDSTDAS 321

Query:   380 LDWATMVVYTCESSCEANVSYKEEFVWVQ 408
             +DW T+ +YTC  SC+    Y  EF+W Q
Sbjct:   322 IDWGTVAIYTCAESCDQGNKYSPEFIWKQ 350

GO:0005737 "cytoplasm" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

RGD|61887 Pdcd2 "programmed cell death 2" [Rattus norvegicus (taxid:10116)]

 Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
 Identities = 92/261 (35%), Positives = 124/261 (47%)

Query:   154 VKVFRCQLPRSNPYYSSEPPKCNGTDKPS------GPGVSLCNWCGTWKGDKVCSSCRRA 207
             ++VFR QLPR N +YS EPP   G             G  LC  CG       CS C++A
Sbjct:    93 LRVFRNQLPRKNAFYSYEPPSETGASDTECVCLQLKSGAHLCRVCGCL-APMTCSRCKQA 151

Query:   208 HYCQQKHQVTHWRSGHKVECQQLXXXXXXXXXXXXXXGTTSVASNSLWPEYEMINEDESE 267
             HYC ++HQ   W+ GHK  C Q                      N L+PE+E++ E E E
Sbjct:   152 HYCSKEHQTLDWQLGHKQACTQSDHLDHMVPDH-----------NFLFPEFEIVTETEDE 200

Query:   268 YDTEMSEVNGQTNALVSKTGVDDTMKSLLDSFEGDSDRRSWATFQEHLAKAPEQVLRYCR 327
                E+ E+   +  + S  GV +     +   E   D   +  F+  +A  PEQ+LRY R
Sbjct:   201 IGPEVVEMEDYSEVIGSMEGVPEEELDSMAKHESKEDH-IFQKFKSKIALEPEQILRYGR 259

Query:   328 SAGAKALWPTSSGQLSKADIPKCSYCGGPRCFEFQILPQLLFYFGVSNDVDSLDWATMVV 387
               G K +W +      + DIP CS CG  R FEFQ++PQLL +        S+DW  + V
Sbjct:   260 --GIKPIWISGENIPQEKDIPDCS-CGAKRIFEFQVMPQLLNHLKADRLGTSVDWGILAV 316

Query:   388 YTCESSCEANVSYKEEFVWVQ 408
             +TC  SC   + Y EEFVW Q
Sbjct:   317 FTCAESCSLGIGYTEEFVWKQ 337

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0012501 "programmed cell death" evidence=IEP

UNIPROTKB|I3L6K4 PDCD2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 99/270 (36%), Positives = 129/270 (47%)

Query:   156 VFRCQLPRSNPYYSSEPPKCNGTDKPSGPGVSL----------CNWCGTWKGDKVCSSCR 205
             VFR QLPR N +YS EPP     D P   G SL          C  CG   G K CS C 
Sbjct:     1 VFRNQLPRRNDFYSFEPPS---EDPPPETGESLSLQLKSGAHLCRVCGCL-GPKTCSRCH 56

Query:   206 RAHYCQQKHQVTHWRSGHKVECQQLXXXXXXXXXXXXXXGTTSVASNSLWPEYEMINEDE 265
             +AHYC ++HQ   WRSGHK  C Q                 T    N L+PE+E++ E E
Sbjct:    57 QAHYCSKEHQALDWRSGHKQACAQ-----------PDNLDNTIPDHNFLFPEFEIVIETE 105

Query:   266 SEYDTEMSEVNGQTNALVSKTGVDDTMKSLLDSFEGDSDR--RSWATFQEHLAKAPEQVL 323
              E   E+ E   ++  ++   G  +  +  LDS      R  R +  F+  ++  PEQ+L
Sbjct:   106 DEIMPEVVEKEDESE-IIGSMG--EASEEELDSMAKHESREDRIFQKFKTKISLEPEQIL 162

Query:   324 RYCRSAGAKALWPTSSGQLSKADIPKCSYCGGPRCFEFQILPQLLFYFGVSNDVDSLDWA 383
             RY R  G   +W ++     + DIP C  CG  R FEFQ++PQLL Y        S+DW 
Sbjct:   163 RYGR--GVAPIWISAENIPQEKDIPDCP-CGAKRIFEFQVMPQLLNYLKADRLGRSVDWG 219

Query:   384 TMVVYTCESSCEANVSYKEEFVWVQHSLSS 413
              + V+TC  SC     Y EEFVW Q  L +
Sbjct:   220 VLAVFTCAESCGLGAGYTEEFVWKQDLLDT 249

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q2YDC9 PDCD2 "Programmed cell death protein 2" [Bos taurus (taxid:9913)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 96/267 (35%), Positives = 132/267 (49%)

Query:   154 VKVFRCQLPRSNPYYSSEPPKCNGTDKPSGPGVS----------LCNWCGTWKGDKVCSS 203
             ++VFR QLPR N +YS EPP     D PS  G S          LC  CG   G K CS 
Sbjct:    93 LRVFRNQLPRQNDFYSYEPPS---EDPPSETGESVYLHLKSGAHLCRVCGC-SGPKRCSR 148

Query:   204 CRRAHYCQQKHQVTHWRSGHKVECQQLXXXXXXXXXXXXXXGTTSVASNSLWPEYEMINE 263
             C +AHYC ++HQ   WR GHK  C Q                      N L+PE+E++ E
Sbjct:   149 CHKAHYCSKEHQSLDWRLGHKQACAQTDNLDNIVPDH-----------NFLFPEFEIVIE 197

Query:   264 DESEYDTEMSEVNGQTNALVSKTGV--DDTMKSLLDSFEGDSDRRSWATFQEHLAKAPEQ 321
              E E   E+ E + ++  ++   G   ++ ++S+    E   DR  +  F+  ++  PEQ
Sbjct:   198 TEDEIMPEVVERDDESE-IIGTMGEAHEEELESMA-KHESKEDR-IFRKFKTKISLEPEQ 254

Query:   322 VLRYCRSAGAKALWPTSSGQLSKADIPKCSYCGGPRCFEFQILPQLLFYFGVSNDVDSLD 381
             +LRY R  G   LW +      + DIP C  CG  R FEFQ++PQLL Y        S+D
Sbjct:   255 ILRYGR--GIAPLWISGENTPKEKDIPDCP-CGAKRLFEFQVMPQLLNYLKADRLGRSVD 311

Query:   382 WATMVVYTCESSCEANVSYKEEFVWVQ 408
             W  + ++TC  SC+  + Y EEFVW Q
Sbjct:   312 WGVLAIFTCAESCKLGIGYTEEFVWKQ 338

GO:0005634 "nucleus" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

MGI|MGI:104643 Pdcd2 "programmed cell death 2" [Mus musculus (taxid:10090)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 92/261 (35%), Positives = 125/261 (47%)

Query:   154 VKVFRCQLPRSNPYYSSEPP---KCNGTD---KPSGPGVSLCNWCGTWKGDKVCSSCRRA 207
             ++VFR QLPR+N +YS EPP   +  GT+        G  LC  CG       CS C++A
Sbjct:    93 LRVFRNQLPRNNAFYSYEPPSETEALGTECVCLQLKSGAHLCRVCGCL-APMTCSRCKQA 151

Query:   208 HYCQQKHQVTHWRSGHKVECQQLXXXXXXXXXXXXXXGTTSVASNSLWPEYEMINEDESE 267
             HYC ++HQ   WR GHK  C Q                      N L+PE+E++ E E E
Sbjct:   152 HYCSKEHQTLDWRLGHKQACTQSDKIDHMVPDH-----------NFLFPEFEIVTETEDE 200

Query:   268 YDTEMSEVNGQTNALVSKTGVDDTMKSLLDSFEGDSDRRSWATFQEHLAKAPEQVLRYCR 327
                E+ E+   +    S  G+ +     +   E   D   +  F+  +A  PEQ+LRY R
Sbjct:   201 ILPEVVEMEDYSEVTGSMGGIPEEELDSMAKHESKEDH-IFQKFKSKIALEPEQILRYGR 259

Query:   328 SAGAKALWPTSSGQLSKADIPKCSYCGGPRCFEFQILPQLLFYFGVSNDVDSLDWATMVV 387
               G K +W +      + DIP C  CG  R FEFQ++PQLL +        S+DW  + V
Sbjct:   260 --GIKPIWISGENIPQEKDIPDCP-CGAKRIFEFQVMPQLLNHLKADRLGRSIDWGVLAV 316

Query:   388 YTCESSCEANVSYKEEFVWVQ 408
             +TC  SC     Y EEFVW Q
Sbjct:   317 FTCAESCSLGSGYTEEFVWKQ 337

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|J9P5I3 PDCD2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 101/284 (35%), Positives = 134/284 (47%)

Query:   144 KRPPEKASRSVKVFRCQLPRSNPYYSSEPPKCNGTDKPSGPGVSLC-------NWCGTWK 196
             + PP      ++VFR QLPR N +YS EPP     D P   G S+C       + C    
Sbjct:    85 RAPP--CCAGLRVFRNQLPRKNDFYSYEPPS---EDPPPETGESVCLQLKSGAHLCRVCG 139

Query:   197 --GDKVCSSCRRAHYCQQKHQVTHWRSGHKVECQQLXXXXXXXXXXXXXXGTTSVASNSL 254
               G K CS C RA YC ++HQ   WR GHK  C                 GT     N L
Sbjct:   140 CLGPKTCSRCHRARYCSKEHQALDWRCGHKQACSH-----------PDLDGTIP-DHNFL 187

Query:   255 WPEYEMINEDESEYDTEMSEVNGQTNALVSKTGVDDTMKSLLDSF---EGDSDRRSWATF 311
             +PE+E++ E E E   E+ E   ++  +V   G  +  +  LDS    E   D+  +  F
Sbjct:   188 FPEFEIVIETEEEITHEVVEKENESE-IVGSMG--EAPEEELDSMAKHESKEDK-IFQKF 243

Query:   312 QEHLAKAPEQVLRYCRSAGAKALWPTSSGQLSKADIPKCSYCGGPRCFEFQILPQLLFYF 371
             +  +A  PEQVLRY R  G   +W +      + DIP C  CG  R FEFQ++PQLL Y 
Sbjct:   244 KTKIALEPEQVLRYGR--GIAPIWISGQNIPQEKDIPHCP-CGAKRIFEFQVMPQLLNYL 300

Query:   372 GVSNDVDSLDWATMVVYTCESSCEANVSYKEEFVWVQHSLSSVP 415
                    S+DW  + V+TC  SC   + Y EEFVW Q  ++  P
Sbjct:   301 KADRLGKSVDWGVLAVFTCAESCRLGIGYTEEFVWKQ-DITDTP 343

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_II1758 hypothetical protein (400 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	415
pfam04194	165	pfam04194, PDCD2_C, Programmed cell death protein	1e-39
pfam01753	39	pfam01753, zf-MYND, MYND finger	7e-06
pfam06949	74	pfam06949, DUF1292, Protein of unknown function (D	9e-04
pfam03066	146	pfam03066, Nucleoplasmin, Nucleoplasmin	0.003

>gnl|CDD|217956 pfam04194, PDCD2_C, Programmed cell death protein 2, C-terminal putative domain

 Score =  139 bits (351), Expect = 1e-39
 Identities = 57/165 (34%), Positives = 84/165 (50%), Gaps = 12/165 (7%)

Query: 251 SNSLWPEYEMINED-----ESEYDTEMSEVNGQTNALVSKTGVDDTMKSLLDSFEGDSDR 305
           S  ++PE E            E +        +        G +D  +   +S +  SD 
Sbjct: 3   SQFVFPEEEEYETLHAPSLPEEPEERE-IDAFEELEKEGGGGKED--EETDESEKAKSDD 59

Query: 306 RSWATFQEHLAKAPEQVLRYCRSAGAKALWPTSSGQLSKADIPKCSYCGGPRCFEFQILP 365
           +++  F++ +A+ PEQVLRY R  G   LW + +    +  IP+CS CG  R FEFQI+P
Sbjct: 60  KTFQKFKKRVARNPEQVLRYER--GGSPLWYSDADAPGELLIPRCSNCGSKRVFEFQIMP 117

Query: 366 QLLFYFGVSNDVDSLDWATMVVYTCESSC--EANVSYKEEFVWVQ 408
           QL+ Y  V ++   +DW T++VYTC  SC  +  V Y EEFV VQ
Sbjct: 118 QLISYLEVESEGVGMDWGTIIVYTCSKSCWPDGVVGYVEEFVGVQ 162

Length = 165

>gnl|CDD|201954 pfam01753, zf-MYND, MYND finger

 Score = 42.4 bits (100), Expect = 7e-06
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 2/40 (5%)

Query: 189 CNWCGTWKG-DKVCSSCRRAHYCQQKHQVTHWRSGHKVEC 227
           C  CG        CS C+  +YC ++ Q   W   HK EC
Sbjct: 1   CAVCGKEALKLLRCSRCKSVYYCSKECQKADW-PYHKKEC 39

Length = 39

>gnl|CDD|219236 pfam06949, DUF1292, Protein of unknown function (DUF1292)

 Score = 37.5 bits (88), Expect = 9e-04
 Identities = 9/36 (25%), Positives = 23/36 (63%), Gaps = 5/36 (13%)

Query: 19 TPLDDDDEEEREMVAYEYEDDDEDDG-----EDEEE 49
           P+ ++++E+ E+  ++ E+D++ +      ED+EE
Sbjct: 25 LPVGEEEDEDIEVYIFKIEEDEDGEEELLPIEDDEE 60

This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown. Length = 74

>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 3/34 (8%)

Query: 21  LDDDDEEEREMVAYEYEDDDEDDGEDEEEQKPVT 54
             DDDEE+ E    E +++D+D+ E EEE+ PV 
Sbjct: 113 ESDDDEEDEEE---EDDEEDDDEDESEEEESPVK 143

Nucleoplasmins are also known as chromatin decondensation proteins. They bind to core histones and transfer DNA to them in a reaction that requires ATP. This is thought to play a role in the assembly of regular nucleosomal arrays. Length = 146

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	415
KOG2061	362	consensus Uncharacterized MYND Zn-finger protein [	100.0
PF04194	164	PDCD2_C: Programmed cell death protein 2, C-termin	100.0
PF09234	224	DUF1963: Domain of unknown function (DUF1963); Int	97.01
PF01753	37	zf-MYND: MYND finger; InterPro: IPR002893 Zinc fin	96.94
PF04194	164	PDCD2_C: Programmed cell death protein 2, C-termin	95.48
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	93.68
COG3878	261	Uncharacterized protein conserved in bacteria [Fun	90.7
KOG2061	362	consensus Uncharacterized MYND Zn-finger protein [	80.8

>KOG2061 consensus Uncharacterized MYND Zn-finger protein [General function prediction only]

Probab=100.00  E-value=6.1e-89  Score=670.10  Aligned_cols=334  Identities=41%  Similarity=0.796  Sum_probs=272.8

Q ss_pred             ccceEEEeecCCCCccccccCCCC-ccccCCCCCCCCCCCCCCCccccCccCCCceeEEEEeecCCCCCCCcccEEEEEe
Q 014983           50 QKPVTLGFLEKPKNRWSLLRHLFP-SKAGGPPAWLDPINLPTGRSCLCDMCGEPLQFVLQVYAPIIEKESTFHRTLFLFM  128 (415)
Q Consensus        50 ~~~V~LGF~d~~~~~~~l~~~~fp-SKiGG~P~WL~p~~lP~~~~l~C~~C~~pm~fLlQvYAPl~~~~~~fhRtLYVF~  128 (415)
                      .++|+|||++ +...+.+.+..|+ |||||.|+||++.++|....++|..|+++|.||||+|||+.+.+++|||+||||+
T Consensus         5 ~~~V~LGf~d-~~~~~~~~~~~~~~skiGG~P~wl~~~~~p~~~~l~C~~C~~~~~lllQ~YAP~~~~~~~fhR~LyvF~   83 (362)
T KOG2061|consen    5 MEPVLLGFAD-PVPAKELDSLDFPTSKIGGRPAWLGPDPLPNPEALLCELCGNPLSLLLQVYAPLPDIPSAFHRSLYVFG   83 (362)
T ss_pred             ccceeeccCC-cccccccccccccccccCCccccCCcccCCCcccccchhhcChHhhhhhhhccCCCCCCccceEEEEEE
Confidence            4689999999 3344555555556 9999999999999999999999999999999999999998888899999999999


Q ss_pred             CCCCccCCccccccccCCCccCCCceeeeeecCCCCCCCCCCCCCCCCCCCCC--------CCCCCCcccccCCCCCCCc
Q 014983          129 CPSMACLRRDQHEQWKRPPEKASRSVKVFRCQLPRSNPYYSSEPPKCNGTDKP--------SGPGVSLCNWCGTWKGDKV  200 (415)
Q Consensus       129 C~~~~C~~~~~~~~~k~~~~~~~~s~kvfR~Qlp~~N~fy~~e~~~~~~~~~~--------~~~~~~~c~~cg~w~~~~~  200 (415)
                      |++++|++             +.++|+|||+|+||.|+||+.+.++......+        ...++.+|++||.| +++.
T Consensus        84 C~~p~C~~-------------~~~~~~vfr~qlpr~~d~~s~~~pk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-a~~~  149 (362)
T KOG2061|consen   84 CRNPSCST-------------ANRSWKVFRVQLPRANDFYSEKAPKTGEPDPQTGSWCEGADKDGADLCGSCGCS-APAA  149 (362)
T ss_pred             cCCCcccc-------------cccceeEeeeccccCCccccccccccCCCccccCCccccccCcccchhccCccc-Cccc
Confidence            99999985             25789999999999999999887764421111        23467899999997 9999


Q ss_pred             CCcccccccchhhhhcccccccchhhhhhhccCCCCCCCCccCCCCccCCCCCCCCceeeeccCCCCcccccccccchhh
Q 014983          201 CSSCRRAHYCQQKHQVTHWRSGHKVECQQLNLSSPSSDSNLADAGTTSVASNSLWPEYEMINEDESEYDTEMSEVNGQTN  280 (415)
Q Consensus       201 cs~c~~~~ycs~~hq~~~~~~ghk~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~fpe~~i~ve~E~~~~~~~~~~~~~~~  280 (415)
                      |+.|+.++|||+.||.+||..+|+..|.+......+.+        .......+||||||+|++|........  ..+.+
T Consensus       150 ~~~~~~a~~~S~~~q~~d~~~~~~~a~aq~~~~~~~~~--------~~p~~~~~~pef~i~vd~E~~~~e~~~--~~~~~  219 (362)
T KOG2061|consen  150 CSPCKAAAYCSKKHQSLDWPKGHKDACAQPSTLGEIHD--------LGPDHNKVFPEFYIYVDTETFNGEDLT--EVHEK  219 (362)
T ss_pred             ccccchhhhcCchhhcccccccccccccCccccccccc--------cCCCCceeceeEEEEEeecccccccch--hhhhh
Confidence            99999999999999999999999999976654332110        123557899999999999966443221  12222


Q ss_pred             Hh---hhc---cCC---chhhhhHhhhhcCC--cccHHHHHHHHHHHhCCCceEEeeccCCCeeecccCCCCCCCCCCCC
Q 014983          281 AL---VSK---TGV---DDTMKSLLDSFEGD--SDRRSWATFQEHLAKAPEQVLRYCRSAGAKALWPTSSGQLSKADIPK  349 (415)
Q Consensus       281 ~~---~~~---~~~---~~~~~~~~e~~e~~--~~D~~F~kF~~ri~~~P~QVLRY~~~~gG~PLw~s~~~~~~~~~iP~  349 (415)
                      .+   +.+   ++.   .+.+..++++||+.  ..|++|+||++||++||+|||||.|  ||+|||++....+....||+
T Consensus       220 ~~~~e~~~~~~~~~~~~~e~~~~~~deyek~~~~~d~tF~kF~k~i~~nP~QilRY~r--gg~PLl~t~~~~~~~~~~p~  297 (362)
T KOG2061|consen  220 SLLSEYDKRDGNGDGESAESSEADMDEYEKSLKADDKTFLKFQKRIAANPEQILRYSR--GGKPLLATGTTEPIESLIPK  297 (362)
T ss_pred             hhhhhhhhhcccCCccccccchhhhhhhhccccccchHHHHHHHHHhcCchheEEeec--CCcceeeccCCCcccccCCC
Confidence            22   111   111   12223456678875  7999999999999999999999999  89999999887776667899


Q ss_pred             CCCCCCCceeeEeechhhhhhcccCC-CCCcceeeEEEEEecCCCCCCC--CCceeeEEEEecC
Q 014983          350 CSYCGGPRCFEFQILPQLLFYFGVSN-DVDSLDWATMVVYTCESSCEAN--VSYKEEFVWVQHS  410 (415)
Q Consensus       350 C~~CG~~R~FEfQlmP~ll~~L~~~~-~~~~ldwGTi~VYTCs~sC~~~--~~y~eE~v~vQ~~  410 (415)
                      |.+||++|+||||||||||++|+++. ...+||||||+||||++||+..  ++|+|||||||+.
T Consensus       298 C~~Cg~~R~FE~QLMP~LI~~L~~d~~~~~sldWgtilVyTCs~SC~~~~~~gy~eE~v~vQ~~  361 (362)
T KOG2061|consen  298 CPNCGGQRIFEFQLMPQLISFLNEDASVDESLDWGTILVYTCSKSCWPANNVGYAEEFVWVQDE  361 (362)
T ss_pred             CcCCCCceEEEEeecHHHHHHhhhhccccccccceeEEEEEehhhcCCccccceeeeEEEEeec
Confidence            99999999999999999999999765 4678999999999999999955  4999999999986

>PF04194 PDCD2_C: Programmed cell death protein 2, C-terminal putative domain ; InterPro: IPR007320 PDCD2 is localized predominantly in the cytosol of cells situated at the opposite pole of the germinal centre from the centroblasts as well as in cells in the mantle zone

Probab=100.00  E-value=6.8e-48  Score=350.43  Aligned_cols=156  Identities=44%  Similarity=0.855  Sum_probs=119.1

Q ss_pred             CCCCceeeeccCCCCccccccccc--chhhHhhhccCCchhhhhHhhhh--cCCcccHHHHHHHHHHHhCCCceEEeecc
Q 014983          253 SLWPEYEMINEDESEYDTEMSEVN--GQTNALVSKTGVDDTMKSLLDSF--EGDSDRRSWATFQEHLAKAPEQVLRYCRS  328 (415)
Q Consensus       253 ~~fpe~~i~ve~E~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~e~~--e~~~~D~~F~kF~~ri~~~P~QVLRY~~~  328 (415)
                      ++||+|+|+|++|+........+.  ..+.............+...+.+  .....|++|+||++||+++|+|||||+| 
T Consensus         1 ~~fpe~~i~ve~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~e~~~~~~D~~f~~F~~rl~~~P~QvlRY~~-   79 (164)
T PF04194_consen    1 PSFPEFEIVVEEEPEEEEELDEEYEEEEIVEFEDDEDESDGGASDEESYESEEDEVDKAFLKFQKRLSRNPEQVLRYCR-   79 (164)
T ss_pred             CCCCCEEEEEEECCCCCCcccccchHHHhhhhhhhccccCccccchhhhhhcccccCHHHHHHHHHHhcCCCeEEEECC-
Confidence            369999999999987653321111  11111111111111101122233  3467999999999999999999999999 


Q ss_pred             CCCeeecccCCCCCCCCCCCCCCCCCCCceeeEeechhhhhhcccCCCC-CcceeeEEEEEecCCCCC--CCCCceeeEE
Q 014983          329 AGAKALWPTSSGQLSKADIPKCSYCGGPRCFEFQILPQLLFYFGVSNDV-DSLDWATMVVYTCESSCE--ANVSYKEEFV  405 (415)
Q Consensus       329 ~gG~PLw~s~~~~~~~~~iP~C~~CG~~R~FEfQlmP~ll~~L~~~~~~-~~ldwGTi~VYTCs~sC~--~~~~y~eE~v  405 (415)
                       ||+|||+++.+.+....||+|++||++|+|||||||+||++|++++.. .+||||||+||||++||+  .+.+|+||||
T Consensus        80 -gG~PLw~s~~~~~~~~~ip~C~~Cg~~R~FEfQlmP~li~~L~~~~~~~~~~dwgtv~VyTCs~sC~~~~~~~y~eE~v  158 (164)
T PF04194_consen   80 -GGKPLWISSTPIPPESDIPKCENCGSPRVFEFQLMPQLIYYLEVDDEGSDSMDWGTVLVYTCSASCWPNDSVGYVEEFV  158 (164)
T ss_pred             -CCeEEEecCCCCCccccCCCCccCCCccEEEEEechHHHHHhhccccCCCCceeeEEEEEEehHHcCCCCCCceEEEEE
Confidence             899999998777655569999999999999999999999999998653 589999999999999995  5689999999


Q ss_pred             EEecC
Q 014983          406 WVQHS  410 (415)
Q Consensus       406 ~vQ~~  410 (415)
                      |||+.
T Consensus       159 ~vQ~e  163 (164)
T PF04194_consen  159 WVQDE  163 (164)
T ss_pred             EEEcC
Confidence            99986

It has been shown to interact with BCL6, an evolutionarily conserved Kruppel-type zinc finger protein that functions as a strong transcriptional repressor and is required for germinal centre development. The rat homologue, Rp8, is associated with programmed cell death in thymocytes.; GO: 0005737 cytoplasm

>PF09234 DUF1963: Domain of unknown function (DUF1963); InterPro: IPR015315 This entry is a set of hypothetical bacterial proteins

Probab=97.01  E-value=0.0013  Score=62.16  Aligned_cols=53  Identities=26%  Similarity=0.208  Sum_probs=28.2

Q ss_pred             ccccCCCCCCCCCCCCCCCccccCccCCCceeEEEEeecC-CCCCC--CcccEEEEEeCCCC
Q 014983           74 SKAGGPPAWLDPINLPTGRSCLCDMCGEPLQFVLQVYAPI-IEKES--TFHRTLFLFMCPSM  132 (415)
Q Consensus        74 SKiGG~P~WL~p~~lP~~~~l~C~~C~~pm~fLlQvYAPl-~~~~~--~fhRtLYVF~C~~~  132 (415)
                      ||+||.|.|......|     ++ ..|.||.||+||++.- .....  +-+=.||+|+...-
T Consensus         1 Sk~GG~P~LP~~~~wP-----~~-~~g~pl~flaQinl~elp~~~~~~P~~GlL~fF~~~~~   56 (224)
T PF09234_consen    1 SKFGGLPDLPPGEEWP-----TD-EDGEPLSFLAQINLAELPPFLPGFPKEGLLQFFIDLDD   56 (224)
T ss_dssp             -EESS----BTTS--------B--TTS-B-EEEEEEEGGGS----TTS-SS-EEEEEE-SSS
T ss_pred             CCcCCcCCCCCCCCCC-----cC-CCCCcceeEEEEEhhhcccchhcCCCceEEEEEEECCc
Confidence            8999999998777666     34 7789999999999862 21112  23579999998664

Their function has not, as yet, been described. ; PDB: 1PV5_A.

>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.94  E-value=0.00017  Score=49.38  Aligned_cols=37  Identities=41%  Similarity=0.964  Sum_probs=29.4

Q ss_pred             ccccCCCCCCCcCCcccccccchhhhhcccccccchhhh
Q 014983          189 CNWCGTWKGDKVCSSCRRAHYCQQKHQVTHWRSGHKVEC  227 (415)
Q Consensus       189 c~~cg~w~~~~~cs~c~~~~ycs~~hq~~~~~~ghk~~c  227 (415)
                      |..|+. .+...|++|+.+.|||+.+|..+| ..|+..|
T Consensus         1 C~~C~~-~~~~~C~~C~~~~YCs~~Cq~~~w-~~Hk~~C   37 (37)
T PF01753_consen    1 CAVCGK-PALKRCSRCKSVYYCSEECQRADW-PYHKFEC   37 (37)
T ss_dssp             -TTTSS-CSSEEETTTSSSEESSHHHHHHHH-HHHCCTH
T ss_pred             CcCCCC-CcCCcCCCCCCEEecCHHHHHHHH-HHHhhhC
Confidence            455665 344589999999999999999999 7788665

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MYND-type zinc finger domains. The MYND domain (myeloid, Nervy, and DEAF-1) is present in a large group of proteins that includes RP-8 (PDCD2), Nervy, and predicted proteins from Drosophila, mammals, Caenorhabditis elegans, yeast, and plants [, , ]. The MYND domain consists of a cluster of cysteine and histidine residues, arranged with an invariant spacing to form a potential zinc-binding motif []. Mutating conserved cysteine residues in the DEAF-1 MYND domain does not abolish DNA binding, which suggests that the MYND domain might be involved in protein-protein interactions []. Indeed, the MYND domain of ETO/MTG8 interacts directly with the N-CoR and SMRT co-repressors [, ]. Aberrant recruitment of co-repressor complexes and inappropriate transcriptional repression is believed to be a general mechanism of leukemogenesis caused by the t(8;21) translocations that fuse ETO with the acute myelogenous leukemia 1 (AML1) protein. ETO has been shown to be a co-repressor recruited by the promyelocytic leukemia zinc finger (PLZF) protein []. A divergent MYND domain present in the adenovirus E1A binding protein BS69 was also shown to interact with N-CoR and mediate transcriptional repression []. The current evidence suggests that the MYND motif in mammalian proteins constitutes a protein-protein interaction domain that functions as a co-repressor-recruiting interface. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3QWW_A 3QWV_A 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3RU0_A ....

>PF04194 PDCD2_C: Programmed cell death protein 2, C-terminal putative domain ; InterPro: IPR007320 PDCD2 is localized predominantly in the cytosol of cells situated at the opposite pole of the germinal centre from the centroblasts as well as in cells in the mantle zone

Probab=95.48  E-value=0.0093  Score=54.47  Aligned_cols=61  Identities=26%  Similarity=0.639  Sum_probs=46.0

Q ss_pred             cccCCCCCCCCCCCCCCC-ccccCccCCCceeEEEEeecCCCC--------CCCcccEEEEEeCCCCccCC
Q 014983           75 KAGGPPAWLDPINLPTGR-SCLCDMCGEPLQFVLQVYAPIIEK--------ESTFHRTLFLFMCPSMACLR  136 (415)
Q Consensus        75 KiGG~P~WL~p~~lP~~~-~l~C~~C~~pm~fLlQvYAPl~~~--------~~~fhRtLYVF~C~~~~C~~  136 (415)
                      -.||.|-|+.....+... .+.|..||.+..|=+||--+|=..        .+---=||.||.|.+ +|+.
T Consensus        78 ~~gG~PLw~s~~~~~~~~~ip~C~~Cg~~R~FEfQlmP~li~~L~~~~~~~~~~dwgtv~VyTCs~-sC~~  147 (164)
T PF04194_consen   78 CRGGKPLWISSTPIPPESDIPKCENCGSPRVFEFQLMPQLIYYLEVDDEGSDSMDWGTVLVYTCSA-SCWP  147 (164)
T ss_pred             CCCCeEEEecCCCCCccccCCCCccCCCccEEEEEechHHHHHhhccccCCCCceeeEEEEEEehH-HcCC
Confidence            469999999987666433 689999999999999998875311        012345999999986 5863

It has been shown to interact with BCL6, an evolutionarily conserved Kruppel-type zinc finger protein that functions as a strong transcriptional repressor and is required for germinal centre development. The rat homologue, Rp8, is associated with programmed cell death in thymocytes.; GO: 0005737 cytoplasm

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=93.68  E-value=0.019  Score=56.65  Aligned_cols=43  Identities=40%  Similarity=0.831  Sum_probs=38.0

Q ss_pred             CcccccCCCCCCCcCCcccccccchhhhhcccccccchhhhhhh
Q 014983          187 SLCNWCGTWKGDKVCSSCRRAHYCQQKHQVTHWRSGHKVECQQL  230 (415)
Q Consensus       187 ~~c~~cg~w~~~~~cs~c~~~~ycs~~hq~~~~~~ghk~~c~~~  230 (415)
                      ..|..||-.+++|.|+.|+.+.||+..-|++||-. ||..|...
T Consensus       320 ~fCstCG~~ga~KrCs~CKav~YCdqeCQk~hWf~-HKK~C~~L  362 (396)
T KOG1710|consen  320 QFCSTCGHPGAKKRCSQCKAVAYCDQECQKFHWFI-HKKVCSFL  362 (396)
T ss_pred             ccccccCCCCccchhhhhHHHHHHHHHHHHhhhHH-HHHHHHHH
Confidence            46888998889999999999999999999999976 88888655

>COG3878 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.70  E-value=0.29  Score=47.24  Aligned_cols=65  Identities=23%  Similarity=0.291  Sum_probs=43.9

Q ss_pred             ccceEEEeecCCCCccccccCCCCccccCCCCCCCCCCCCCCCccccCccCCCceeEEEEee----cCCCCCCCcccEEE
Q 014983           50 QKPVTLGFLEKPKNRWSLLRHLFPSKAGGPPAWLDPINLPTGRSCLCDMCGEPLQFVLQVYA----PIIEKESTFHRTLF  125 (415)
Q Consensus        50 ~~~V~LGF~d~~~~~~~l~~~~fpSKiGG~P~WL~p~~lP~~~~l~C~~C~~pm~fLlQvYA----Pl~~~~~~fhRtLY  125 (415)
                      ...++|-|.......+       -|||||+|--.--...|..+      =|.||.||+||+=    +|++.|  -.-.|+
T Consensus        19 k~~iel~~k~~~~~~~-------~SKiGG~pYlpk~e~yP~de------~g~Pl~fLAQINf~elp~le~yP--~~GILq   83 (261)
T COG3878          19 KPCIELDFKMGEETLS-------QSKIGGRPYLPKFETYPLDE------NGVPLVFLAQINFEELPQLEEYP--VEGILQ   83 (261)
T ss_pred             hheeEEeeccCCcccc-------ccccCCCcccccccccCccC------CCCceeeeeecChhhCcchhcCC--ccceEE
Confidence            3457888885433332       59999999866666777533      2679999999973    344433  366788


Q ss_pred             EEeC
Q 014983          126 LFMC  129 (415)
Q Consensus       126 VF~C  129 (415)
                      .|+=
T Consensus        84 Fyi~   87 (261)
T COG3878          84 FYIS   87 (261)
T ss_pred             EEEe
Confidence            7775

>KOG2061 consensus Uncharacterized MYND Zn-finger protein [General function prediction only]

Probab=80.80  E-value=0.98  Score=46.09  Aligned_cols=59  Identities=20%  Similarity=0.465  Sum_probs=43.8

Q ss_pred             CCCeeecccCCCCCCCCCCCCCCCCCCCceeeEeechhhhhhcccCCCCCcceeeEEEEEecCCC-CC
Q 014983          329 AGAKALWPTSSGQLSKADIPKCSYCGGPRCFEFQILPQLLFYFGVSNDVDSLDWATMVVYTCESS-CE  395 (415)
Q Consensus       329 ~gG~PLw~s~~~~~~~~~iP~C~~CG~~R~FEfQlmP~ll~~L~~~~~~~~ldwGTi~VYTCs~s-C~  395 (415)
                      -||.|-|+.....+. ..++.|..||.++.|=+|+--.|..-       .+..=-+|.||-|.+. |.
T Consensus        31 iGG~P~wl~~~~~p~-~~~l~C~~C~~~~~lllQ~YAP~~~~-------~~~fhR~LyvF~C~~p~C~   90 (362)
T KOG2061|consen   31 IGGRPAWLGPDPLPN-PEALLCELCGNPLSLLLQVYAPLPDI-------PSAFHRSLYVFGCRNPSCS   90 (362)
T ss_pred             cCCccccCCcccCCC-cccccchhhcChHhhhhhhhccCCCC-------CCccceEEEEEEcCCCccc
Confidence            389999976666665 47899999999999999987752221       1223378999999764 65

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	415
2d8q_A	70	BLU protein, zinc finger MYND domain containing pr	6e-09
2od1_A	60	Protein CBFA2T1; zinc finger, cross-braced topolog	8e-09
2dj8_A	60	Protein CBFA2T1; zinc finger MYND domain, protein	1e-08
2odd_A	64	Protein CBFA2T1; MYND zinc finger, cross-braced to	1e-08
2jw6_A	52	Deformed epidermal autoregulatory factor 1 homolo;	1e-07

>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A Length = 70

 Score = 51.2 bits (122), Expect = 6e-09
 Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 176 NGTDKPSGPGVSLCNWCGTWKGDKVCSSCRRAHYCQQKHQVTHWRSGHKVECQQLNLSSP 235
           +   +   P    C +C   +  K CS C+   YC ++ QV HW   H   C        
Sbjct: 5   SSGLEAVAPERPRCAYCSA-EASKRCSRCQNEWYCCRECQVKHWEK-HGKTCVLAAQGDR 62

Query: 236 SSDS 239
           +   
Sbjct: 63  AKSG 66

>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens} Length = 60

 Score = 50.7 bits (121), Expect = 8e-09
 Identities = 16/53 (30%), Positives = 19/53 (35%), Gaps = 2/53 (3%)

Query: 178 TDKPSGPGVSLCNWCGTWKGDKVCSSCRRAHYCQQKHQVTHWRSGHKVECQQL 230
           +  P+      C  CG  K  + CS C  A YC    Q   W   H   C Q 
Sbjct: 5   SGSPNSDSSESCWNCGR-KASETCSGCNTARYCGSFCQHKDWEK-HHHICGQT 55

>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1 Length = 60

 Score = 50.3 bits (120), Expect = 1e-08
 Identities = 14/59 (23%), Positives = 17/59 (28%), Gaps = 2/59 (3%)

Query: 173 PKCNGTDKPSGPGVSLCNWCGTWKGDKVCSSCRRAHYCQQKHQVTHWRSGHKVECQQLN 231
              +            C  CG  K  + CS C  A YC    Q   W   H   C   +
Sbjct: 2   SSGSSGINQQEDSSESCWNCGR-KASETCSGCNTARYCGSFCQHKDWEK-HHHICSGPS 58

>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens} Length = 64

 Score = 50.3 bits (120), Expect = 1e-08
 Identities = 20/66 (30%), Positives = 22/66 (33%), Gaps = 8/66 (12%)

Query: 165 NPYYSSEPPKCNGTDKPSGPGVSLCNWCGTWKGDKVCSSCRRAHYCQQKHQVTHWRSGHK 224
           N Y+  E     G    S      C  CG  K  + CS C  A YC    Q   W   H 
Sbjct: 2   NLYFQGENLYFQGDSSES------CWNCGR-KASETCSGCNTARYCGSFCQHKDWEK-HH 53

Query: 225 VECQQL 230
             C Q 
Sbjct: 54  HICGQT 59

>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1 Length = 52

 Score = 46.7 bits (111), Expect = 1e-07
 Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 189 CNWCGTWKGDKVCSSCRRAHYCQQKHQVTHWRSGHKVECQQ 229
           C  CG  +    C+ C + +YC    Q   W+  H+  C Q
Sbjct: 12  CVNCGR-EAMSECTGCHKVNYCSTFCQRKDWKD-HQHICGQ 50

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	415
1pv5_A	264	Hypothetical protein YWQG; structural genomics, PS	97.66
2odd_A	64	Protein CBFA2T1; MYND zinc finger, cross-braced to	97.35
2od1_A	60	Protein CBFA2T1; zinc finger, cross-braced topolog	97.24
2d8q_A	70	BLU protein, zinc finger MYND domain containing pr	97.21
2dj8_A	60	Protein CBFA2T1; zinc finger MYND domain, protein	97.14
2jw6_A	52	Deformed epidermal autoregulatory factor 1 homolo;	96.79
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	87.91
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	86.02
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	84.66

>1pv5_A Hypothetical protein YWQG; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.75A {Bacillus subtilis} SCOP: d.251.1.1

Probab=97.66  E-value=9.4e-05  Score=71.11  Aligned_cols=56  Identities=18%  Similarity=0.281  Sum_probs=42.0

Q ss_pred             CCccccCCCCCCCCCCCCCCCccccCccCCCceeEEEEeec-CCCCC-CCcccEEEEEeCCCCc
Q 014983           72 FPSKAGGPPAWLDPINLPTGRSCLCDMCGEPLQFVLQVYAP-IIEKE-STFHRTLFLFMCPSMA  133 (415)
Q Consensus        72 fpSKiGG~P~WL~p~~lP~~~~l~C~~C~~pm~fLlQvYAP-l~~~~-~~fhRtLYVF~C~~~~  133 (415)
                      ..||+||.|.|......|     +| .+|+||.||+|||++ |...+ -+-...|++|+|..-.
T Consensus        38 ~~Sk~GG~p~lp~~~~~P-----~~-~~g~pl~~laQi~~~~lp~~~~lp~~g~L~ff~~~~d~   95 (264)
T 1pv5_A           38 YDSKIAGDPYFPKHETYP-----TD-ENGQPMKLLAQINFSHIPQLDGYPSSGILQFYISVHDD   95 (264)
T ss_dssp             TSCEESSCCCCBTTSCCC-----BC-TTSCBCEEEEEEEGGGSCCCTTSCSSCEEEEEECSSSS
T ss_pred             CccccCCccCCCCCCCCC-----cC-CCCCceEEEEEEccccCcccCCCCCCCEEEEEEecCcc
Confidence            479999999998766555     45 589999999999996 22111 2357899999996543

>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}

Probab=97.35  E-value=4.4e-05  Score=57.64  Aligned_cols=44  Identities=34%  Similarity=0.729  Sum_probs=38.1

Q ss_pred             CCCcccccCCCCCCCcCCcccccccchhhhhcccccccchhhhhhh
Q 014983          185 GVSLCNWCGTWKGDKVCSSCRRAHYCQQKHQVTHWRSGHKVECQQL  230 (415)
Q Consensus       185 ~~~~c~~cg~w~~~~~cs~c~~~~ycs~~hq~~~~~~ghk~~c~~~  230 (415)
                      ....|..||. .+.+.|++|+.+.||++.+|..||+ .||..|...
T Consensus        16 ~~~~C~~C~~-~~~~~Cs~C~~~~YCs~~CQ~~~W~-~Hk~~C~~~   59 (64)
T 2odd_A           16 SSESCWNCGR-KASETCSGCNTARYCGSFCQHKDWE-KHHHICGQT   59 (64)
T ss_dssp             CSSSCTTTSS-CCCEEETTTSCCEESSHHHHHHHHH-HHTTTTTSS
T ss_pred             CCCcCccccC-CCcccCCCCCChhhCCHHHHHHHHH-HHhHHHhcc
Confidence            3468999998 5678899999999999999999999 699999643

>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens}

Probab=97.24  E-value=6.5e-05  Score=56.08  Aligned_cols=45  Identities=33%  Similarity=0.720  Sum_probs=38.3

Q ss_pred             CCCCCcccccCCCCCCCcCCcccccccchhhhhcccccccchhhhhh
Q 014983          183 GPGVSLCNWCGTWKGDKVCSSCRRAHYCQQKHQVTHWRSGHKVECQQ  229 (415)
Q Consensus       183 ~~~~~~c~~cg~w~~~~~cs~c~~~~ycs~~hq~~~~~~ghk~~c~~  229 (415)
                      ......|..||. .+.+.|++|+.+.||++.+|..||+ .||..|..
T Consensus        10 ~~~~~~C~~C~~-~~~~~Cs~C~~v~YCs~~CQ~~dW~-~Hk~~C~~   54 (60)
T 2od1_A           10 SDSSESCWNCGR-KASETCSGCNTARYCGSFCQHKDWE-KHHHICGQ   54 (60)
T ss_dssp             -CCSSCCTTTSS-CCCEECTTTSCCEESSHHHHHHHHH-HHTTTSSC
T ss_pred             CCCCCccccCCC-cccccCCCCCCeeecCHHHHHHHHH-HHhHHHcc
Confidence            345568999998 5678899999999999999999999 69998864

>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A

Probab=97.21  E-value=0.00013  Score=56.23  Aligned_cols=46  Identities=33%  Similarity=0.836  Sum_probs=39.5

Q ss_pred             CCCCcccccCCCCCCCcCCcccccccchhhhhcccccccchhhhhhhc
Q 014983          184 PGVSLCNWCGTWKGDKVCSSCRRAHYCQQKHQVTHWRSGHKVECQQLN  231 (415)
Q Consensus       184 ~~~~~c~~cg~w~~~~~cs~c~~~~ycs~~hq~~~~~~ghk~~c~~~~  231 (415)
                      .....|..|+. .+.+.|++|+.+.||++.+|..||+. ||..|....
T Consensus        13 ~~~~~C~~C~~-~~~~~Cs~Ck~v~YCs~eCQ~~~W~~-HK~~C~~~~   58 (70)
T 2d8q_A           13 PERPRCAYCSA-EASKRCSRCQNEWYCCRECQVKHWEK-HGKTCVLAA   58 (70)
T ss_dssp             CCCCBCSSSCC-BCCCBCTTTSCCBCSCHHHHHHTHHH-HHHHCCCCC
T ss_pred             CCCCcCCCCCC-cccccCCCCCCEeeCCHHHhHHHHHH-HHHHHHHHH
Confidence            34568999998 46788999999999999999999998 999997543

>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1

Probab=97.14  E-value=0.00013  Score=54.34  Aligned_cols=44  Identities=32%  Similarity=0.702  Sum_probs=37.7

Q ss_pred             CCCcccccCCCCCCCcCCcccccccchhhhhcccccccchhhhhhh
Q 014983          185 GVSLCNWCGTWKGDKVCSSCRRAHYCQQKHQVTHWRSGHKVECQQL  230 (415)
Q Consensus       185 ~~~~c~~cg~w~~~~~cs~c~~~~ycs~~hq~~~~~~ghk~~c~~~  230 (415)
                      ....|..|+. .+.+.|++|+.+.||++.+|..||+ .||..|...
T Consensus        14 ~~~~C~~C~~-~~~~~Cs~C~~v~YCs~~CQ~~~W~-~Hk~~C~~~   57 (60)
T 2dj8_A           14 SSESCWNCGR-KASETCSGCNTARYCGSFCQHKDWE-KHHHICSGP   57 (60)
T ss_dssp             CSCCCSSSCS-CCCEECTTTSCCEESSHHHHHHTHH-HHTTTSCCS
T ss_pred             CCcccccCCC-CCcccCCCCCCEeeeCHHHHHHHHH-HHHHHHHhc
Confidence            4468999998 5678899999999999999999999 599988643

>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1

Probab=96.79  E-value=0.00043  Score=49.78  Aligned_cols=41  Identities=27%  Similarity=0.756  Sum_probs=34.8

Q ss_pred             CCcccccCCCCCCCcCCcccccccchhhhhcccccccchhhhh
Q 014983          186 VSLCNWCGTWKGDKVCSSCRRAHYCQQKHQVTHWRSGHKVECQ  228 (415)
Q Consensus       186 ~~~c~~cg~w~~~~~cs~c~~~~ycs~~hq~~~~~~ghk~~c~  228 (415)
                      ...|..||. .+.+.|++|+.+.||++.+|..||+. ||..|.
T Consensus         9 ~~~C~~C~~-~~~~~C~~C~~~~YCs~~CQ~~~W~~-Hk~~C~   49 (52)
T 2jw6_A            9 EQSCVNCGR-EAMSECTGCHKVNYCSTFCQRKDWKD-HQHICG   49 (52)
T ss_dssp             --CCSSSSS-SCSEECTTTCSSEESSHHHHHHHTTT-GGGTTT
T ss_pred             CCcCCCCCC-CCcCcCCCCCCEeecCHHHHHHHHHH-HCHHHc
Confidence            357888987 46788999999999999999999995 999885

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=87.91  E-value=0.14  Score=52.01  Aligned_cols=47  Identities=36%  Similarity=0.661  Sum_probs=38.0

Q ss_pred             CCCcccccCCC-CCCCcCCcccccccchhhhhcccccccchhhhhhhcc
Q 014983          185 GVSLCNWCGTW-KGDKVCSSCRRAHYCQQKHQVTHWRSGHKVECQQLNL  232 (415)
Q Consensus       185 ~~~~c~~cg~w-~~~~~cs~c~~~~ycs~~hq~~~~~~ghk~~c~~~~~  232 (415)
                      ....|..|+.. .....|++|+.+.|||+..|..+|+ .||..|.....
T Consensus        46 ~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~-~Hk~eC~~~~~   93 (429)
T 3qwp_A           46 RGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWP-DHKRECKCLKS   93 (429)
T ss_dssp             BTTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHTHH-HHHHHHHHHHH
T ss_pred             CCCcCcCCCCcCCCCCcCCCCCCcccCChhhhhhhhh-hhHHhhhhHHh
Confidence            34578888853 2446699999999999999999998 79999976543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=86.02  E-value=0.18  Score=51.30  Aligned_cols=47  Identities=30%  Similarity=0.709  Sum_probs=38.0

Q ss_pred             CCCcccccCCC-CCCCcCCcccccccchhhhhcccccccchhhhhhhcc
Q 014983          185 GVSLCNWCGTW-KGDKVCSSCRRAHYCQQKHQVTHWRSGHKVECQQLNL  232 (415)
Q Consensus       185 ~~~~c~~cg~w-~~~~~cs~c~~~~ycs~~hq~~~~~~ghk~~c~~~~~  232 (415)
                      ....|..|+.- .....|++|+.+.|||+..|..+|. .||..|.....
T Consensus        48 ~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~-~Hk~eC~~l~~   95 (433)
T 3qww_A           48 RGHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDWP-LHKLECSSMVV   95 (433)
T ss_dssp             TTTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHHHH-HHTTTHHHHHH
T ss_pred             cCCcCCcccccCCCCCCCCCCcceeecChhhhhhhhh-HHHHHHHHHHH
Confidence            44678888852 3456799999999999999999995 89999976543

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=84.66  E-value=0.23  Score=51.43  Aligned_cols=47  Identities=30%  Similarity=0.630  Sum_probs=37.7

Q ss_pred             CCCcccccCCC-CCCCcCCcccccccchhhhhcccccccchhhhhhhcc
Q 014983          185 GVSLCNWCGTW-KGDKVCSSCRRAHYCQQKHQVTHWRSGHKVECQQLNL  232 (415)
Q Consensus       185 ~~~~c~~cg~w-~~~~~cs~c~~~~ycs~~hq~~~~~~ghk~~c~~~~~  232 (415)
                      ....|..|+.. .....|+.|+.+.|||+..|..+|+ .||..|.....
T Consensus        48 ~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~-~Hk~eC~~~~~   95 (490)
T 3n71_A           48 INFVCHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWL-NHKNECAAIKK   95 (490)
T ss_dssp             TTTBCTTTCCBCSCCEECTTTSCCEESSHHHHHHHHH-HHHHHHHHHHH
T ss_pred             cCCcCCCCCCCCCCCCCCCCCCCcCcCCHHHhhhhhh-HHHHHhHHHHh
Confidence            45678888642 3456799999999999999999998 79999975543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	415
d2dana1	47	g.85.1.1 (A:8-54) Zinc finger MYND domain-containi	2e-07
d2dj8a1	47	g.85.1.1 (A:8-54) Zinc finger MYND domain-containi	1e-06
d2jw6a1	38	g.85.1.1 (A:503-540) Zinc finger MYND domain-conta	1e-06

>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 10, ZMYND10
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (106), Expect = 2e-07
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 184 PGVSLCNWCGTWKGDKVCSSCRRAHYCQQKHQVTHWRSGHKVEC 227
           P    C +C   +  K CS C+   YC ++ QV HW   H   C
Sbjct: 6   PERPRCAYCSA-EASKRCSRCQNEWYCCRECQVKHWEK-HGKTC 47

>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 2, MTG8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (101), Expect = 1e-06
 Identities = 14/39 (35%), Positives = 15/39 (38%), Gaps = 2/39 (5%)

Query: 189 CNWCGTWKGDKVCSSCRRAHYCQQKHQVTHWRSGHKVEC 227
           C  CG  K  + CS C  A YC    Q   W   H   C
Sbjct: 11  CWNCGR-KASETCSGCNTARYCGSFCQHKDWEK-HHHIC 47

>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 2, MTG8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (99), Expect = 1e-06
 Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 2/39 (5%)

Query: 189 CNWCGTWKGDKVCSSCRRAHYCQQKHQVTHWRSGHKVEC 227
           C  CG  +    C+ C + +YC    Q   W+  H+  C
Sbjct: 2   CVNCGR-EAMSECTGCHKVNYCSTFCQRKDWKD-HQHIC 38

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	415
d1pv5a_	261	Hypothetical protein YwqG {Bacillus subtilis [TaxI	97.84
d2dj8a1	47	Zinc finger MYND domain-containing protein 2, MTG8	97.64
d2jw6a1	38	Zinc finger MYND domain-containing protein 2, MTG8	97.61
d2dana1	47	Zinc finger MYND domain-containing protein 10, ZMY	97.58

>d1pv5a_ d.251.1.1 (A:) Hypothetical protein YwqG {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Hypothetical protein YwqG
superfamily: Hypothetical protein YwqG
family: Hypothetical protein YwqG
domain: Hypothetical protein YwqG
species: Bacillus subtilis [TaxId: 1423]

Probab=97.84  E-value=3.5e-05  Score=71.36  Aligned_cols=57  Identities=16%  Similarity=0.230  Sum_probs=43.9

Q ss_pred             CCCccccCCCCCCCCCCCCCCCccccCccCCCceeEEEEeec----CCCCCCCcccEEEEEeCCCCccC
Q 014983           71 LFPSKAGGPPAWLDPINLPTGRSCLCDMCGEPLQFVLQVYAP----IIEKESTFHRTLFLFMCPSMACL  135 (415)
Q Consensus        71 ~fpSKiGG~P~WL~p~~lP~~~~l~C~~C~~pm~fLlQvYAP----l~~~~~~fhRtLYVF~C~~~~C~  135 (415)
                      ...||+||.|.|......|     +| ..|+||.||+|||..    ++..  +-+..|++|+|..-..+
T Consensus        34 ~~~SK~GG~P~lP~~~~wP-----~~-~~g~pl~fLaQin~~elp~l~~~--P~~GlLqfF~~~~d~~~   94 (261)
T d1pv5a_          34 RYDSKIAGDPYFPKHETYP-----TD-ENGQPMKLLAQINFSHIPQLDGY--PSSGILQFYISVHDDVY   94 (261)
T ss_dssp             TTSCEESSCCCCBTTSCCC-----BC-TTSCBCEEEEEEEGGGSCCCTTS--CSSCEEEEEECSSSSST
T ss_pred             cccCccCCccCCCCCCCcC-----cC-CCCCeeEEEEEEeHhHcCCCCCC--CCCCeEEEEEeCCCccc
Confidence            3579999999998877666     34 469999999999964    4433  35799999999865444

>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 2, MTG8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=7.5e-06  Score=56.66  Aligned_cols=42  Identities=33%  Similarity=0.764  Sum_probs=35.4

Q ss_pred             CCCCcccccCCCCCCCcCCcccccccchhhhhcccccccchhhh
Q 014983          184 PGVSLCNWCGTWKGDKVCSSCRRAHYCQQKHQVTHWRSGHKVEC  227 (415)
Q Consensus       184 ~~~~~c~~cg~w~~~~~cs~c~~~~ycs~~hq~~~~~~ghk~~c  227 (415)
                      .....|.+||. .+.+.|++|+.+.|||+.+|..||.. ||..|
T Consensus         6 ~~~~~C~~C~~-~~~~~C~~C~~~~YCs~~CQ~~dW~~-Hk~~C   47 (47)
T d2dj8a1           6 DSSESCWNCGR-KASETCSGCNTARYCGSFCQHKDWEK-HHHIC   47 (47)
T ss_dssp             CCSCCCSSSCS-CCCEECTTTSCCEESSHHHHHHTHHH-HTTTS
T ss_pred             cCCCcCCCCCc-cccccCCCCCCeeeCCHHHHHHHHHH-HhhhC
Confidence            35568999997 56788999999999999999999975 87654

>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 2, MTG8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=8.5e-06  Score=53.86  Aligned_cols=37  Identities=30%  Similarity=0.881  Sum_probs=31.5

Q ss_pred             ccccCCCCCCCcCCcccccccchhhhhcccccccchhhh
Q 014983          189 CNWCGTWKGDKVCSSCRRAHYCQQKHQVTHWRSGHKVEC  227 (415)
Q Consensus       189 c~~cg~w~~~~~cs~c~~~~ycs~~hq~~~~~~ghk~~c  227 (415)
                      |..||. .+.+.|++|+.+.|||+.+|..||+. ||..|
T Consensus         2 C~~C~~-~~~~~C~~C~~~~YCs~~CQ~~~W~~-Hk~~C   38 (38)
T d2jw6a1           2 CVNCGR-EAMSECTGCHKVNYCSTFCQRKDWKD-HQHIC   38 (38)
T ss_dssp             CSSSSS-SCSEECTTTCSSEESSHHHHHHHTTT-GGGTT
T ss_pred             ccccCc-cccccCCCCCCEeeCCHHHHHHHHHH-HhhhC
Confidence            677876 56678999999999999999999975 88765

>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 10, ZMYND10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=9.6e-06  Score=56.12  Aligned_cols=40  Identities=35%  Similarity=0.943  Sum_probs=34.0

Q ss_pred             CCcccccCCCCCCCcCCcccccccchhhhhcccccccchhhh
Q 014983          186 VSLCNWCGTWKGDKVCSSCRRAHYCQQKHQVTHWRSGHKVEC  227 (415)
Q Consensus       186 ~~~c~~cg~w~~~~~cs~c~~~~ycs~~hq~~~~~~ghk~~c  227 (415)
                      .+.|.+||. .+.+.|++|+.+.||++.+|..||.. ||..|
T Consensus         8 ~~~C~~Cg~-~~~~~Cs~C~~~~YCs~~CQ~~dW~~-Hk~~C   47 (47)
T d2dana1           8 RPRCAYCSA-EASKRCSRCQNEWYCCRECQVKHWEK-HGKTC   47 (47)
T ss_dssp             CCCCSSSCC-CCCEECTTTSCSEESSHHHHHHTHHH-HTTTC
T ss_pred             CCcCcCCCC-hhhccCCCCCCEeeCCHHHHHHHHHH-HhhhC
Confidence            346999998 56788999999999999999999974 87654