Citrus Sinensis ID: 014993

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-----
MQRLLGARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQQ
ccccccccccccHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHccccEEEEEHHHHHHHHHHHHcccHHHHHHcccccccccEEEEEEcccccccccccccEEEEEEEccEEEEcccEEEEEccccccEEEEEEEccccccccccEEEEEcccccccccccccccccccccccccEEcccccccccccccccccccccccHHHHccccccccHHHccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHcccHHHHcccHHHHHHHHHHHHHHHcc
ccHHHHHHHHHHHHHHHcHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccHHHccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHccHHHHHHHccHHHHHHHcHHHccccccEEEEccEccEcccHHHcccEEEEcccEEEEEEEEEEEEccccccEEEEEEEccHHHHHHcEEEEEEEcccccEEEcccccEcccccccEEEEEEEEEEEEHHHEEcccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEccEEHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHcc
MQRLLGARSLCASFftkkqkhsaafsstsllfddtqLQFKESVGQFAreniapraanidqsnsfpqdVNLWKLMGnfnlhgitapqeygglglgylYHCIAMEEisrasgsvglsygahsnLCINQlvrhgspaqkdkylpklisgehvgalamsepnagsdvvgmkckadrvdggyiingnkmwctngpvAQTLVVYAKTDIKAGSKGITAFIIekgmpgfstaqkldklgmrgsdtCELVFEncfvpnenvlgqegkgcnSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRqreqfgrplgefqfiqGKTADMYTALQSSRSYVYSVArdcdngkvdpkdcAGVILCAAERATQVTLQAIQClggngyvneyatgrllrdaklyeigaGTSEIRRMIIGRALLKQQ
MQRLLGARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIApraanidqsnsFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYeigagtseirRMIIGRALLKQQ
MQRLLGARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEygglglgylyHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQQ
********SLCASFFTK*******F**TSLLFDDTQLQFKESVGQFAR**I***********SFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGS****DKYLPKLISGEHVGALA*******SDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRAL****
*************************SSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALL***
MQRLLGARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQQ
**RLLGARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ*
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SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MQRLLGARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query415 2.2.26 [Sep-21-2011]
Q9FS88412 Isovaleryl-CoA dehydrogen N/A no 0.985 0.992 0.791 0.0
Q9SWG0409 Isovaleryl-CoA dehydrogen yes no 0.985 1.0 0.840 0.0
Q9FS87401 Isovaleryl-CoA dehydrogen N/A no 0.944 0.977 0.838 0.0
Q9JHI5424 Isovaleryl-CoA dehydrogen yes no 0.903 0.884 0.664 1e-149
Q5RBD5423 Isovaleryl-CoA dehydrogen yes no 0.968 0.950 0.619 1e-147
P26440423 Isovaleryl-CoA dehydrogen yes no 0.968 0.950 0.614 1e-146
P12007424 Isovaleryl-CoA dehydrogen yes no 0.903 0.884 0.651 1e-146
Q3SZI8426 Isovaleryl-CoA dehydrogen yes no 0.903 0.880 0.651 1e-145
P45857379 Acyl-CoA dehydrogenase OS yes no 0.891 0.976 0.400 3e-76
P45867379 Acyl-CoA dehydrogenase OS no no 0.872 0.955 0.417 8e-76
>sp|Q9FS88|IVD1_SOLTU Isovaleryl-CoA dehydrogenase 1, mitochondrial OS=Solanum tuberosum GN=IVD1 PE=2 SV=1 Back     alignment and function desciption
 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/418 (79%), Positives = 369/418 (88%), Gaps = 9/418 (2%)

Query: 1   MQRLLGARSLCASF---FTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAAN 57
           M +L   RSL ++    F   Q   AAFS TSLL DDTQ QFKESV +FA+ENIAP A  
Sbjct: 1   MHKLFAVRSLSSAIAKNFKSLQNQQAAFS-TSLLLDDTQKQFKESVAKFAQENIAPYAEK 59

Query: 58  IDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYG 117
           ID++NSFP+++NLWKLMG+FNLHGITAP+EYGGL LGYLYHCIA+EEISRASG+V +SYG
Sbjct: 60  IDRTNSFPKEINLWKLMGDFNLHGITAPEEYGGLNLGYLYHCIALEEISRASGAVAVSYG 119

Query: 118 AHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGY 177
             SN+CINQLVR+G+P QK KYLPKLISG+H+GALAMSEPNAGSDVV MKC+ADRVDGGY
Sbjct: 120 VQSNVCINQLVRNGTPDQKQKYLPKLISGDHIGALAMSEPNAGSDVVSMKCRADRVDGGY 179

Query: 178 IINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSD 237
           ++NGNKMWCTNGPVA TL+VYAKTD  AGSKGITAFIIEK MPGFSTAQKLDKLGMRGSD
Sbjct: 180 VLNGNKMWCTNGPVANTLIVYAKTDTTAGSKGITAFIIEKEMPGFSTAQKLDKLGMRGSD 239

Query: 238 TCELVFENCFVPNENVLGQEGKGCNSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLP 297
           TCELVFENCFVP ENVLGQEGK     GVYV+MSGLDLERLVLAAGP+GIMQAC+D+V+P
Sbjct: 240 TCELVFENCFVPKENVLGQEGK-----GVYVLMSGLDLERLVLAAGPVGIMQACMDIVIP 294

Query: 298 YVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCA 357
           YVRQREQFGRP+GEFQ IQGK ADMYTALQSSRSYVY+VA+DCDNGK+DPKDC+G IL A
Sbjct: 295 YVRQREQFGRPIGEFQLIQGKLADMYTALQSSRSYVYAVAKDCDNGKIDPKDCSGTILLA 354

Query: 358 AERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQQ 415
           AERATQV LQAIQCLGGNGY+NEY TGRLLRDAK+YEI AGTSEIRR++IGR L K Q
Sbjct: 355 AERATQVALQAIQCLGGNGYINEYPTGRLLRDAKMYEIAAGTSEIRRLVIGRELFKHQ 412

Solanum tuberosum (taxid: 4113)
EC: 1EC: .EC: 3EC: .EC: 8EC: .EC: 4
>sp|Q9SWG0|IVD_ARATH Isovaleryl-CoA dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=IVD PE=1 SV=2 Back     alignment and function description
>sp|Q9FS87|IVD2_SOLTU Isovaleryl-CoA dehydrogenase 2, mitochondrial (Fragment) OS=Solanum tuberosum GN=IVD2 PE=1 SV=1 Back     alignment and function description
>sp|Q9JHI5|IVD_MOUSE Isovaleryl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Ivd PE=1 SV=1 Back     alignment and function description
>sp|Q5RBD5|IVD_PONAB Isovaleryl-CoA dehydrogenase, mitochondrial OS=Pongo abelii GN=IVD PE=2 SV=1 Back     alignment and function description
>sp|P26440|IVD_HUMAN Isovaleryl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=IVD PE=1 SV=1 Back     alignment and function description
>sp|P12007|IVD_RAT Isovaleryl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Ivd PE=1 SV=2 Back     alignment and function description
>sp|Q3SZI8|IVD_BOVIN Isovaleryl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=IVD PE=2 SV=1 Back     alignment and function description
>sp|P45857|ACDB_BACSU Acyl-CoA dehydrogenase OS=Bacillus subtilis (strain 168) GN=mmgC PE=2 SV=3 Back     alignment and function description
>sp|P45867|ACDA_BACSU Acyl-CoA dehydrogenase OS=Bacillus subtilis (strain 168) GN=acdA PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query415
255570831406 acyl-CoA dehydrogenase, putative [Ricinu 0.978 1.0 0.878 0.0
356539122410 PREDICTED: isovaleryl-CoA dehydrogenase 0.985 0.997 0.865 0.0
357472331417 Isovaleryl-CoA dehydrogenase [Medicago t 0.983 0.978 0.851 0.0
115461843409 Os05g0125500 [Oryza sativa Japonica Grou 0.927 0.941 0.871 0.0
224106760420 predicted protein [Populus trichocarpa] 0.925 0.914 0.899 0.0
225435261405 PREDICTED: isovaleryl-CoA dehydrogenase 0.973 0.997 0.857 0.0
297746230404 unnamed protein product [Vitis vinifera] 0.973 1.0 0.857 0.0
356544623409 PREDICTED: isovaleryl-CoA dehydrogenase 0.983 0.997 0.857 0.0
413950112477 hypothetical protein ZEAMMB73_407983 [Ze 0.927 0.807 0.856 0.0
357134886411 PREDICTED: isovaleryl-CoA dehydrogenase 0.925 0.934 0.868 0.0
>gi|255570831|ref|XP_002526368.1| acyl-CoA dehydrogenase, putative [Ricinus communis] gi|223534327|gb|EEF36039.1| acyl-CoA dehydrogenase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  728 bits (1879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/413 (87%), Positives = 386/413 (93%), Gaps = 7/413 (1%)

Query: 1   MQRLLGARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQ 60
           MQ++ G RSLC+S   K+Q   A+FS TSLLFDDTQLQFKESV QFA+ENIAP A+ IDQ
Sbjct: 1   MQKVFGLRSLCSSTL-KQQTRRASFS-TSLLFDDTQLQFKESVSQFAQENIAPHASKIDQ 58

Query: 61  SNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHS 120
           +N+FP++VNLWKLMG+FNLHGITAP+EYGGLGLGYLYHCIAMEEISRASGSV LSYGAHS
Sbjct: 59  TNNFPKEVNLWKLMGDFNLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVALSYGAHS 118

Query: 121 NLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIIN 180
           NLCINQLVR+GSPAQK KYLPKLISGEHVGALAMSEPNAGSDVV MKCKAD VDGGYI+N
Sbjct: 119 NLCINQLVRNGSPAQKQKYLPKLISGEHVGALAMSEPNAGSDVVSMKCKADCVDGGYILN 178

Query: 181 GNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCE 240
           GNKMWCTNGPVAQTLV+YAKTD+KAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCE
Sbjct: 179 GNKMWCTNGPVAQTLVIYAKTDVKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCE 238

Query: 241 LVFENCFVPNENVLGQEGKGCNSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVR 300
           LVFENCFVP+ENVLGQEGK     GVYVMMSGLDLERLVL+AGPLGIMQACLDV+LPY+R
Sbjct: 239 LVFENCFVPDENVLGQEGK-----GVYVMMSGLDLERLVLSAGPLGIMQACLDVILPYIR 293

Query: 301 QREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAER 360
           QREQFGRP+GEFQFIQGK ADMYT+LQSSRSYVYSVARDCD GKVDPKDCAGVILCAAER
Sbjct: 294 QREQFGRPIGEFQFIQGKVADMYTSLQSSRSYVYSVARDCDRGKVDPKDCAGVILCAAER 353

Query: 361 ATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 413
           ATQV LQAIQCLGGNGYVNEY TGRLLRDAKLYEIGAGTSEIRRMIIGR L K
Sbjct: 354 ATQVALQAIQCLGGNGYVNEYPTGRLLRDAKLYEIGAGTSEIRRMIIGRELFK 406

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356539122|ref|XP_003538049.1| PREDICTED: isovaleryl-CoA dehydrogenase 1, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|357472331|ref|XP_003606450.1| Isovaleryl-CoA dehydrogenase [Medicago truncatula] gi|355507505|gb|AES88647.1| Isovaleryl-CoA dehydrogenase [Medicago truncatula] gi|388507478|gb|AFK41805.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|115461843|ref|NP_001054521.1| Os05g0125500 [Oryza sativa Japonica Group] gi|47900455|gb|AAT39231.1| putative isovaleryl-CoA dehydrogenase [Oryza sativa Japonica Group] gi|57863927|gb|AAS90672.2| putative isovaleryl-CoA dehydrogenase [Oryza sativa Japonica Group] gi|113578072|dbj|BAF16435.1| Os05g0125500 [Oryza sativa Japonica Group] gi|215694715|dbj|BAG89906.1| unnamed protein product [Oryza sativa Japonica Group] gi|222630047|gb|EEE62179.1| hypothetical protein OsJ_16966 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|224106760|ref|XP_002314277.1| predicted protein [Populus trichocarpa] gi|222850685|gb|EEE88232.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225435261|ref|XP_002285017.1| PREDICTED: isovaleryl-CoA dehydrogenase 1, mitochondrial-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297746230|emb|CBI16286.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356544623|ref|XP_003540748.1| PREDICTED: isovaleryl-CoA dehydrogenase 1, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|413950112|gb|AFW82761.1| hypothetical protein ZEAMMB73_407983 [Zea mays] Back     alignment and taxonomy information
>gi|357134886|ref|XP_003569046.1| PREDICTED: isovaleryl-CoA dehydrogenase 1, mitochondrial-like [Brachypodium distachyon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query415
TAIR|locus:2078302409 IVD "isovaleryl-CoA-dehydrogen 0.985 1.0 0.816 2.3e-181
DICTYBASE|DDB_G0279827415 ivdA "isovaleryl-CoA dehydroge 0.906 0.906 0.691 6.5e-138
UNIPROTKB|F1NF35424 IVD "Uncharacterized protein" 0.968 0.948 0.604 4.5e-130
MGI|MGI:1929242424 Ivd "isovaleryl coenzyme A deh 0.898 0.879 0.647 4.5e-130
UNIPROTKB|J3KR54426 IVD "Isovaleryl-CoA dehydrogen 0.942 0.917 0.609 7.6e-128
UNIPROTKB|P26440423 IVD "Isovaleryl-CoA dehydrogen 0.942 0.924 0.609 7.6e-128
UNIPROTKB|Q3SZI8426 IVD "Isovaleryl-CoA dehydrogen 0.898 0.875 0.636 1.6e-127
UNIPROTKB|F1SSR4426 IVD "Uncharacterized protein" 0.896 0.873 0.635 2e-127
RGD|2936424 Ivd "isovaleryl-CoA dehydrogen 0.898 0.879 0.634 3.3e-127
UNIPROTKB|Q8EFR9389 liuA "Isovaleryl-CoA dehydroge 0.913 0.974 0.620 4.2e-127
TAIR|locus:2078302 IVD "isovaleryl-CoA-dehydrogenase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1760 (624.6 bits), Expect = 2.3e-181, P = 2.3e-181
 Identities = 339/415 (81%), Positives = 369/415 (88%)

Query:     1 MQRLLGARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQ 60
             MQR   ARS+   +  K ++ S +  S+SLLFDDTQLQFKESV +FA++NIAP A  ID+
Sbjct:     1 MQRFFSARSILG-YAVKTRRRSFSSRSSSLLFDDTQLQFKESVSKFAQDNIAPHAERIDK 59

Query:    61 SNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHS 120
             +NSFP+DVNLWKLMG FNLHGITAP+E          HCIAMEEISRASGSV LSYGAHS
Sbjct:    60 TNSFPKDVNLWKLMGEFNLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVALSYGAHS 119

Query:   121 NLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIIN 180
             NLCINQLVR+G+ AQK+KYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA++VDGGYI+N
Sbjct:   120 NLCINQLVRNGTAAQKEKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKAEKVDGGYILN 179

Query:   181 GNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCE 240
             GNKMWCTNGP A+TLVVYAKTD KAGSKGITAFIIEKGM GFSTAQKLDKLGMRGSDTCE
Sbjct:   180 GNKMWCTNGPSAETLVVYAKTDTKAGSKGITAFIIEKGMTGFSTAQKLDKLGMRGSDTCE 239

Query:   241 LVFENCFVPNENVLGQEGKGCNSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVR 300
             LVFENCFVP EN+L +EGKG     VYV+MSGLDLERLVLAAGPLGIMQACLD VLPY+R
Sbjct:   240 LVFENCFVPEENILDKEGKG-----VYVLMSGLDLERLVLAAGPLGIMQACLDNVLPYIR 294

Query:   301 QREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAER 360
             QREQFGRP+GEFQFIQGK ADMYTALQSSRSYVYSVARDCDNGKVDPKDCAG ILCAAER
Sbjct:   295 QREQFGRPVGEFQFIQGKVADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGTILCAAER 354

Query:   361 ATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQQ 415
             ATQV LQAIQCLGGNGY+NEYATGRLLRDAKLYEIGAGTSEIRR++IGR L K++
Sbjct:   355 ATQVALQAIQCLGGNGYINEYATGRLLRDAKLYEIGAGTSEIRRIVIGRELFKEE 409
GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0008152 "metabolic process" evidence=IEA
GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0008470 "isovaleryl-CoA dehydrogenase activity" evidence=ISS;IDA
GO:0005759 "mitochondrial matrix" evidence=IDA
GO:0006552 "leucine catabolic process" evidence=IMP;IDA
GO:0005524 "ATP binding" evidence=IDA
GO:0009083 "branched-chain amino acid catabolic process" evidence=IMP
GO:0009744 "response to sucrose stimulus" evidence=RCA
GO:0009750 "response to fructose stimulus" evidence=RCA
DICTYBASE|DDB_G0279827 ivdA "isovaleryl-CoA dehydrogenase, mitochondrial" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1NF35 IVD "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1929242 Ivd "isovaleryl coenzyme A dehydrogenase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|J3KR54 IVD "Isovaleryl-CoA dehydrogenase, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P26440 IVD "Isovaleryl-CoA dehydrogenase, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q3SZI8 IVD "Isovaleryl-CoA dehydrogenase, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SSR4 IVD "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|2936 Ivd "isovaleryl-CoA dehydrogenase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q8EFR9 liuA "Isovaleryl-CoA dehydrogenase LiuA" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P46703ACDP_MYCLE1, ., 3, ., 9, 9, ., -0.35210.90360.9640yesno
Q9JHI5IVD_MOUSE1, ., 3, ., 8, ., 40.66490.90360.8844yesno
P63427ACDP_MYCTU1, ., 3, ., 9, 9, ., -0.34740.88670.9460yesno
P52042ACDS_CLOAB1, ., 3, ., 8, ., 10.41710.88430.9683yesno
P63428ACDP_MYCBO1, ., 3, ., 9, 9, ., -0.34740.88670.9460yesno
Q06319ACDS_MEGEL1, ., 3, ., 8, ., 10.38280.89870.9738yesno
Q9SWG0IVD_ARATH1, ., 3, ., 8, ., 40.84090.98551.0yesno
Q9FS87IVD2_SOLTU1, ., 3, ., 8, ., 40.83870.94450.9775N/Ano
Q9FS88IVD1_SOLTU1, ., 3, ., 8, ., 40.79180.98550.9927N/Ano
P45857ACDB_BACSU1, ., 3, ., 9, 9, ., -0.40050.89150.9762yesno
Q3SZI8IVD_BOVIN1, ., 3, ., 8, ., 40.65180.90360.8802yesno
Q5RBD5IVD_PONAB1, ., 3, ., 8, ., 40.61900.96860.9503yesno
P12007IVD_RAT1, ., 3, ., 8, ., 40.65180.90360.8844yesno
P26440IVD_HUMAN1, ., 3, ., 8, ., 40.61420.96860.9503yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.3.990.998
3rd Layer1.3.99.100.994

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
4337676
acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed (409 aa)
(Oryza sativa Japonica)
Predicted Functional Partners:
4345605
methylcrotonoyl-CoA carboxylase beta chain, mitochondrial precursor, putative, expressed (572 aa)
• •• •• 0.984
4325632
3-hydroxybutyryl-CoA dehydrogenase, putative, expressed (302 aa)
•  • •• 0.964
4334698
electron transfer flavoprotein subunit alpha, mitochondrial precursor, putative, expressed; The [...] (358 aa)
• ••  • 0.963
4335102
electron transfer flavoprotein subunit beta, putative, expressed; The electron transfer flavopr [...] (253 aa)
• ••  • 0.953
4352741
methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor, putative, expressed (737 aa)
•  • •• 0.924
4346520
acetyl-CoA acetyltransferase, cytosolic, putative, expressed (401 aa)
•    •• 0.906
4326136
acetyl-CoA acetyltransferase, cytosolic, putative, expressed (416 aa)
•    •• 0.901
4330184
enoyl-CoA hydratase/isomerase family protein, putative, expressed (300 aa)
•    •• 0.865
OsI_08314
enoyl-CoA hydratase/isomerase family protein, putative, expressed (294 aa)
•    •• 0.841
4331150
3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed (448 aa)
•    •• 0.820

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query415
PLN02519404 PLN02519, PLN02519, isovaleryl-CoA dehydrogenase 0.0
cd01156376 cd01156, IVD, Isovaleryl-CoA dehydrogenase 0.0
cd01158373 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrog 1e-143
COG1960393 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid meta 1e-134
cd00567327 cd00567, ACAD, Acyl-CoA dehydrogenase 1e-112
PTZ00461410 PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; 4e-98
cd01160372 cd01160, LCAD, Long chain acyl-CoA dehydrogenase 8e-96
cd01161409 cd01161, VLCAD, Very long chain acyl-CoA dehydroge 4e-88
cd01162375 cd01162, IBD, Isobutyryl-CoA dehydrogenase 3e-85
cd01151386 cd01151, GCD, Glutaryl-CoA dehydrogenase 2e-81
cd01157378 cd01157, MCAD, Medium chain acyl-CoA dehydrogenase 3e-81
PRK12341381 PRK12341, PRK12341, putative acyl-CoA dehydrogenas 2e-63
PRK03354380 PRK03354, PRK03354, crotonobetainyl-CoA dehydrogen 1e-55
pfam00441150 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, 9e-52
TIGR03207372 TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-Co 2e-51
PLN02526412 PLN02526, PLN02526, acyl-coenzyme A oxidase 3e-47
pfam02771113 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, 5e-45
cd01152380 cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehyd 6e-44
cd01153407 cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogena 8e-44
cd01154418 cd01154, AidB, Proteins involved in DNA damage res 3e-34
TIGR03203378 TIGR03203, pimD_small, pimeloyl-CoA dehydrogenase, 7e-28
PTZ00456 622 PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provis 3e-25
TIGR03204395 TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, 3e-24
cd01155394 cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases simil 8e-21
pfam0277052 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, 3e-18
PRK13026 774 PRK13026, PRK13026, acyl-CoA dehydrogenase; Review 2e-17
cd01163377 cd01163, DszC, Dibenzothiophene (DBT) desulfurizat 3e-17
PRK09463 777 PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed 1e-15
PLN02876822 PLN02876, PLN02876, acyl-CoA dehydrogenase 1e-14
PRK11561538 PRK11561, PRK11561, isovaleryl CoA dehydrogenase; 5e-14
cd01159370 cd01159, NcnH, Naphthocyclinone hydroxylase 5e-14
PLN02636 686 PLN02636, PLN02636, acyl-coenzyme A oxidase 2e-13
PTZ00457 520 PTZ00457, PTZ00457, acyl-CoA dehydrogenase; Provis 5e-13
TIGR04022391 TIGR04022, sulfur_SfnB, sulfur acquisition oxidore 2e-10
pfam08028134 pfam08028, Acyl-CoA_dh_2, Acyl-CoA dehydrogenase, 3e-09
cd01150 610 cd01150, AXO, Peroxisomal acyl-CoA oxidase 4e-09
PTZ00460 646 PTZ00460, PTZ00460, acyl-CoA dehydrogenase; Provis 4e-05
PLN02312 680 PLN02312, PLN02312, acyl-CoA oxidase 1e-04
>gnl|CDD|215284 PLN02519, PLN02519, isovaleryl-CoA dehydrogenase Back     alignment and domain information 
 Score =  805 bits (2081), Expect = 0.0
 Identities = 351/400 (87%), Positives = 374/400 (93%), Gaps = 5/400 (1%)

Query: 16  TKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMG 75
            +      + SS+SLLFDDTQLQFKESV QFA+ENIAP AA ID +NSFP+DVNLWKLMG
Sbjct: 10  RRGLARRFSSSSSSLLFDDTQLQFKESVQQFAQENIAPHAAAIDATNSFPKDVNLWKLMG 69

Query: 76  NFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQ 135
           +FNLHGITAP+EYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVR+G+PAQ
Sbjct: 70  DFNLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRNGTPAQ 129

Query: 136 KDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTL 195
           K+KYLPKLISGEHVGALAMSEPN+GSDVV MKCKA+RVDGGY++NGNKMWCTNGPVAQTL
Sbjct: 130 KEKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAERVDGGYVLNGNKMWCTNGPVAQTL 189

Query: 196 VVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLG 255
           VVYAKTD+ AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVP ENVLG
Sbjct: 190 VVYAKTDVAAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLG 249

Query: 256 QEGKGCNSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFI 315
           QEGK     GVYVMMSGLDLERLVLAAGPLG+MQACLDVVLPYVRQREQFGRP+GEFQFI
Sbjct: 250 QEGK-----GVYVMMSGLDLERLVLAAGPLGLMQACLDVVLPYVRQREQFGRPIGEFQFI 304

Query: 316 QGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGN 375
           QGK ADMYT+LQSSRSYVYSVARDCDNGKVD KDCAGVILCAAERATQV LQAIQCLGGN
Sbjct: 305 QGKLADMYTSLQSSRSYVYSVARDCDNGKVDRKDCAGVILCAAERATQVALQAIQCLGGN 364

Query: 376 GYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQQ 415
           GY+NEY TGRLLRDAKLYEIGAGTSEIRRM+IGR L K++
Sbjct: 365 GYINEYPTGRLLRDAKLYEIGAGTSEIRRMLIGRELFKEE 404

Length = 404
>gnl|CDD|173845 cd01156, IVD, Isovaleryl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173847 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases Back     alignment and domain information
>gnl|CDD|224871 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|173838 cd00567, ACAD, Acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|185640 PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|173849 cd01160, LCAD, Long chain acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173850 cd01161, VLCAD, Very long chain acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173851 cd01162, IBD, Isobutyryl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173840 cd01151, GCD, Glutaryl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173846 cd01157, MCAD, Medium chain acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|183454 PRK12341, PRK12341, putative acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|179566 PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated Back     alignment and domain information
>gnl|CDD|201229 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal domain Back     alignment and domain information
>gnl|CDD|132251 TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|178141 PLN02526, PLN02526, acyl-coenzyme A oxidase Back     alignment and domain information
>gnl|CDD|217220 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-terminal domain Back     alignment and domain information
>gnl|CDD|173841 cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26 Back     alignment and domain information
>gnl|CDD|173842 cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to fadE5 Back     alignment and domain information
>gnl|CDD|173843 cd01154, AidB, Proteins involved in DNA damage response, similar to the AidB gene product Back     alignment and domain information
>gnl|CDD|132247 TIGR03203, pimD_small, pimeloyl-CoA dehydrogenase, small subunit Back     alignment and domain information
>gnl|CDD|185635 PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|132248 TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, large subunit Back     alignment and domain information
>gnl|CDD|173844 cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2 Back     alignment and domain information
>gnl|CDD|145755 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain Back     alignment and domain information
>gnl|CDD|237277 PRK13026, PRK13026, acyl-CoA dehydrogenase; Reviewed Back     alignment and domain information
>gnl|CDD|173852 cd01163, DszC, Dibenzothiophene (DBT) desulfurization enzyme C Back     alignment and domain information
>gnl|CDD|236528 PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed Back     alignment and domain information
>gnl|CDD|215473 PLN02876, PLN02876, acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|183199 PRK11561, PRK11561, isovaleryl CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|173848 cd01159, NcnH, Naphthocyclinone hydroxylase Back     alignment and domain information
>gnl|CDD|215342 PLN02636, PLN02636, acyl-coenzyme A oxidase Back     alignment and domain information
>gnl|CDD|185636 PTZ00457, PTZ00457, acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|188537 TIGR04022, sulfur_SfnB, sulfur acquisition oxidoreductase, SfnB family Back     alignment and domain information
>gnl|CDD|219705 pfam08028, Acyl-CoA_dh_2, Acyl-CoA dehydrogenase, C-terminal domain Back     alignment and domain information
>gnl|CDD|173839 cd01150, AXO, Peroxisomal acyl-CoA oxidase Back     alignment and domain information
>gnl|CDD|185639 PTZ00460, PTZ00460, acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|215178 PLN02312, PLN02312, acyl-CoA oxidase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 415
KOG0139398 consensus Short-chain acyl-CoA dehydrogenase [Lipi 100.0
KOG0140408 consensus Medium-chain acyl-CoA dehydrogenase [Lip 100.0
KOG0141421 consensus Isovaleryl-CoA dehydrogenase [Amino acid 100.0
PLN02519404 isovaleryl-CoA dehydrogenase 100.0
cd01151386 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehyd 100.0
cd01156376 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA d 100.0
PRK03354380 crotonobetainyl-CoA dehydrogenase; Validated 100.0
cd01157378 MCAD Medium chain acyl-CoA dehydrogenase. MCADs ar 100.0
TIGR03203378 pimD_small pimeloyl-CoA dehydrogenase, small subun 100.0
cd01162375 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA d 100.0
TIGR03207372 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogen 100.0
cd01160372 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an 100.0
PRK12341381 putative acyl-CoA dehydrogenase; Provisional 100.0
PTZ00461410 isovaleryl-CoA dehydrogenase; Provisional 100.0
PLN02526412 acyl-coenzyme A oxidase 100.0
cd01161409 VLCAD Very long chain acyl-CoA dehydrogenase. VLCA 100.0
cd01158373 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and 100.0
PRK09463 777 fadE acyl-CoA dehydrogenase; Reviewed 100.0
cd01155394 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE 100.0
PRK13026 774 acyl-CoA dehydrogenase; Reviewed 100.0
TIGR03204395 pimC_large pimeloyl-CoA dehydrogenase, large subun 100.0
COG1960393 CaiA Acyl-CoA dehydrogenases [Lipid metabolism] 100.0
cd01153407 ACAD_fadE5 Putative acyl-CoA dehydrogenases simila 100.0
PTZ00456 622 acyl-CoA dehydrogenase; Provisional 100.0
PLN02876822 acyl-CoA dehydrogenase 100.0
cd01152380 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases 100.0
KOG0137 634 consensus Very-long-chain acyl-CoA dehydrogenase [ 100.0
PLN02636 686 acyl-coenzyme A oxidase 100.0
cd01163377 DszC Dibenzothiophene (DBT) desulfurization enzyme 100.0
KOG0138432 consensus Glutaryl-CoA dehydrogenase [Amino acid t 100.0
cd01154418 AidB Proteins involved in DNA damage response, sim 100.0
PLN02312 680 acyl-CoA oxidase 100.0
cd01159370 NcnH Naphthocyclinone hydroxylase. Naphthocyclinon 100.0
PRK11561538 isovaleryl CoA dehydrogenase; Provisional 100.0
cd00567327 ACAD Acyl-CoA dehydrogenase. Both mitochondrial ac 100.0
PTZ00457 520 acyl-CoA dehydrogenase; Provisional 100.0
PTZ00460 646 acyl-CoA dehydrogenase; Provisional 100.0
cd01150 610 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl 100.0
PLN02443 664 acyl-coenzyme A oxidase 100.0
KOG1469392 consensus Predicted acyl-CoA dehydrogenase [Genera 100.0
KOG0135 661 consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid t 100.0
TIGR02309477 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxy 99.96
PF00441150 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal 99.93
KOG0136 670 consensus Acyl-CoA oxidase [Lipid transport and me 99.92
PF02771113 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal 99.8
PF08028134 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal 99.68
COG2368493 Aromatic ring hydroxylase [Secondary metabolites b 99.64
PF0277052 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle doma 99.58
TIGR02310519 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxy 99.56
PF11794264 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N ter 98.88
PF03241205 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C termi 96.81
PTZ00457520 acyl-CoA dehydrogenase; Provisional 93.96
PF14749125 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; 89.2
KOG0137634 consensus Very-long-chain acyl-CoA dehydrogenase [ 85.22
>KOG0139 consensus Short-chain acyl-CoA dehydrogenase [Lipid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=9.9e-84  Score=580.88  Aligned_cols=364  Identities=40%  Similarity=0.674  Sum_probs=352.5

Q ss_pred             CCChHHHHHHHHHHHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcc
Q 014993           30 LLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRAS  109 (415)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~~~  109 (415)
                      ..++|++..+++.+++|+.+++.|.++++|++..+|+  .+++.+.++|++++.+|++|||.|.++...+.++|||++.|
T Consensus        35 ~~l~E~e~~l~~tvrkfa~~~i~Plv~~mD~~~~~~~--~v~k~~fe~Glmgv~vpeeyGGsG~df~~~~~v~EEisk~d  112 (398)
T KOG0139|consen   35 QILSETEQMLQKTVRKFAQEEIKPLVREMDRESRYPA--SVIKGLFELGLMGVEVPEEYGGSGLDFFAAAIVIEEISKVD  112 (398)
T ss_pred             hhcCcHHHHHHHHHHHHHHHhcchHHHhhhhhccCCH--HHHHHHhhcCcceeecChhhCCCchhHHHHHHHHHHHhccC
Confidence            3445555599999999999999999999999999999  99999999999999999999999999999999999999999


Q ss_pred             ccchhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCEEEEEeEeecccCC
Q 014993          110 GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNG  189 (415)
Q Consensus       110 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~~  189 (415)
                      +|++..+..|+.+...+|..||+++||++|+|. ..|+.++++++|||+.|||...+.|+|+++||.|+|||+|.|+||+
T Consensus       113 ~sv~~~v~v~ntL~~~~i~~fGteeqK~~~~P~-~~~d~vgsfAlSEpgaGSDa~A~~T~Ak~~Gd~~viNGsKmWItN~  191 (398)
T KOG0139|consen  113 ASVGVIVDVQNTLYLPLIIQFGTEEQKEKYLPK-LTGDLVGSFALSEPGAGSDAFALKTTAKKDGDDYVINGSKMWITNA  191 (398)
T ss_pred             ccceeEEEecccccchHHHHhCcHHHHhhhcch-hhccccceeeecCCCCCcchHHhhhhHhhcCCeEEEecceeeecCC
Confidence            999999999988999999999999999977776 5688899999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEEEeCCCCCCCCeEEEEEecCCCCeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCCCCCCcchHHHH
Q 014993          190 PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVM  269 (415)
Q Consensus       190 ~~ad~~~v~a~~~~~~~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~~~~~~~g~~~~  269 (415)
                      ..||+++|+|.+++..+++++++|+||+++||+++..+.|++|||++.++.++||||+||.+++||+.|.     |+++.
T Consensus       192 ~~A~~~lVfan~d~~~~~Kgit~fiV~rd~~Gl~~~k~eDKLGmRaSsTcql~fedVrVpks~IlGe~G~-----GykyA  266 (398)
T KOG0139|consen  192 GEADWFLVFANADPSKGYKGITCFIVPRDTPGLSLGKKEDKLGMRASSTCQLHFEDVRVPKSSILGEYGK-----GYKYA  266 (398)
T ss_pred             cccceEEEEEecChhhccCceeEEEeeCCCCCcccCCccccccccccceeeEEeccccccchhhcccCCc-----chHHH
Confidence            9999999999998888899999999999999999999999999999999999999999999999999999     99999


Q ss_pred             HhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchh
Q 014993          270 MSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKD  349 (415)
Q Consensus       270 ~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~  349 (415)
                      +..++.+|+.++++++|.++.|+|+++.|+++|.+||++|.+||.+||+||+|.+++|++|.++|++++.-|.+.|...+
T Consensus       267 m~~Ln~gRIgi~AqmlglaQ~c~d~tI~Y~q~R~~FGk~l~d~Q~iQhqiA~~~teiEaaRlL~ynaAr~k~~G~pf~ke  346 (398)
T KOG0139|consen  267 IEVLNAGRIGIGAQMLGLAQGCFDETIPYAQERLQFGKRLLDFQGLQHQIADMATEIEAARLLVYNAARMKDQGLPFVKE  346 (398)
T ss_pred             HHhcCccceeehhhhhhhhHhHHHhhhHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHH
Q 014993          350 CAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSE  401 (415)
Q Consensus       350 ~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~  401 (415)
                      ++|||+++++.|..++..|+|++||.||++|+|.+|||||++...|++|+++
T Consensus       347 AAMAKl~ase~A~~~t~qCiq~lGG~Gyt~d~paek~yRDarI~~IyeGtsn  398 (398)
T KOG0139|consen  347 AAMAKLYASEVATKTTHQCIQWLGGVGYTKDFPAEKFYRDARIGEIYEGTSN  398 (398)
T ss_pred             HHHHHHhhhhhhhHHHHHHHHHHhcccccccccHHHHhhhceeeeeecCCCC
Confidence            9999999999999999999999999999999999999999999999999863

>KOG0140 consensus Medium-chain acyl-CoA dehydrogenase [Lipid transport and metabolism] Back     alignment and domain information
>KOG0141 consensus Isovaleryl-CoA dehydrogenase [Amino acid transport and metabolism; Lipid transport and metabolism] Back     alignment and domain information
>PLN02519 isovaleryl-CoA dehydrogenase Back     alignment and domain information
>cd01151 GCD Glutaryl-CoA dehydrogenase Back     alignment and domain information
>cd01156 IVD Isovaleryl-CoA dehydrogenase Back     alignment and domain information
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated Back     alignment and domain information
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase Back     alignment and domain information
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit Back     alignment and domain information
>cd01162 IBD Isobutyryl-CoA dehydrogenase Back     alignment and domain information
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase Back     alignment and domain information
>cd01160 LCAD Long chain acyl-CoA dehydrogenase Back     alignment and domain information
>PRK12341 putative acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional Back     alignment and domain information
>PLN02526 acyl-coenzyme A oxidase Back     alignment and domain information
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase Back     alignment and domain information
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases Back     alignment and domain information
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed Back     alignment and domain information
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2 Back     alignment and domain information
>PRK13026 acyl-CoA dehydrogenase; Reviewed Back     alignment and domain information
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit Back     alignment and domain information
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism] Back     alignment and domain information
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5 Back     alignment and domain information
>PTZ00456 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>PLN02876 acyl-CoA dehydrogenase Back     alignment and domain information
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26 Back     alignment and domain information
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism] Back     alignment and domain information
>PLN02636 acyl-coenzyme A oxidase Back     alignment and domain information
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C Back     alignment and domain information
>KOG0138 consensus Glutaryl-CoA dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product Back     alignment and domain information
>PLN02312 acyl-CoA oxidase Back     alignment and domain information
>cd01159 NcnH Naphthocyclinone hydroxylase Back     alignment and domain information
>PRK11561 isovaleryl CoA dehydrogenase; Provisional Back     alignment and domain information
>cd00567 ACAD Acyl-CoA dehydrogenase Back     alignment and domain information
>PTZ00457 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>PTZ00460 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>cd01150 AXO Peroxisomal acyl-CoA oxidase Back     alignment and domain information
>PLN02443 acyl-coenzyme A oxidase Back     alignment and domain information
>KOG1469 consensus Predicted acyl-CoA dehydrogenase [General function prediction only] Back     alignment and domain information
>KOG0135 consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component Back     alignment and domain information
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1 Back     alignment and domain information
>KOG0136 consensus Acyl-CoA oxidase [Lipid transport and metabolism] Back     alignment and domain information
>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1 Back     alignment and domain information
>PF08028 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR013107 Acyl Co-A dehydrogenases (1 Back     alignment and domain information
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1 Back     alignment and domain information
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component Back     alignment and domain information
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli [] Back     alignment and domain information
>PF03241 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C terminal; InterPro: IPR024719 This C-terminal domain is found in HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli [] Back     alignment and domain information
>PTZ00457 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>PF14749 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; PDB: 2FON_A 1W07_B 1IS2_B 2DDH_A Back     alignment and domain information
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query415
1ivh_A394 Structure Of Human Isovaleryl-coa Dehydrogenase At 1e-142
1jqi_A388 Crystal Structure Of Rat Short Chain Acyl-Coa Dehyd 2e-69
2vig_A391 Crystal Structure Of Human Short-Chain Acyl Coa Deh 8e-67
1buc_A383 Three-Dimensional Structure Of Butyryl-Coa Dehydrog 3e-65
2dvl_A372 Crystal Structure Of Project Tt0160 From Thermus Th 2e-61
3pfd_A393 Crystal Structure Of An Acyl-Coa Dehydrogenase From 5e-61
2jif_A404 Structure Of Human Short-Branched Chain Acyl-Coa De 3e-60
1ukw_A379 Crystal Structure Of Medium-Chain Acyl-Coa Dehydrog 2e-59
1ws9_A387 Crystal Structure Of Project Id Tt0172 From Thermus 6e-59
3mpi_A397 Structure Of The Glutaryl-Coenzyme A Dehydrogenase 9e-56
1egd_A396 Structure Of T255e, E376g Mutant Of Human Medium Ch 4e-54
1udy_A396 Medium-Chain Acyl-Coa Dehydrogenase With 3-Thiaocta 2e-53
3mdd_A385 Crystal Structures Of Medium Chain Acyl-Coa Dehydro 2e-53
2a1t_A421 Structure Of The Human Mcad:etf E165betaa Complex L 2e-53
1ege_A396 Structure Of T255e, E376g Mutant Of Human Medium Ch 2e-53
2pg0_A385 Crystal Structure Of Acyl-Coa Dehydrogenase From Ge 2e-52
2z1q_A 577 Crystal Structure Of Acyl Coa Dehydrogenase Length 8e-52
3d6b_A395 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogena 6e-51
3gqt_A399 Crystal Structure Of Glutaryl-Coa Dehydrogenase Fro 6e-51
3eom_A396 2.4 A Crystal Structure Of Native Glutaryl-Coa Dehy 7e-51
3nf4_A387 Crystal Structure Of Acyl-Coa Dehydrogenase From My 9e-49
3b96_A 587 Structural Basis For Substrate Fatty-Acyl Chain Spe 6e-48
2uxw_A 607 Crystal Structure Of Human Very Long Chain Acyl-coa 6e-48
3owa_A 597 Crystal Structure Of Acyl-Coa Dehydrogenase Complex 4e-47
1rx0_A393 Crystal Structure Of Isobutyryl-Coa Dehydrogenase C 1e-42
3r7k_A403 Crystal Structure Of A Probable Acyl Coa Dehydrogen 3e-41
3oib_A403 Crystal Structure Of A Putative Acyl-Coa Dehydrogen 3e-41
3sf6_A403 Crystal Structure Of Glutaryl-Coa Dehydrogenase Fro 1e-39
3swo_A399 Crystal Structure Of A Glutaryl-Coa Dehydrogenase F 3e-37
1sir_A394 The Crystal Structure And Mechanism Of Human Glutar 4e-37
1siq_A392 The Crystal Structure And Mechanism Of Human Glutar 4e-37
2r0m_A394 The Effect Of A Glu370asp Mutation In Glutaryl-Coa 5e-37
2ix5_A436 Short Chain Specific Acyl-Coa Oxidase From Arabidop 1e-36
2ix6_A449 Short Chain Specific Acyl-Coa Oxidase From Arabidop 1e-36
2eba_A385 Crystal Structure Of The Putative Glutaryl-coa Dehy 1e-35
1r2j_A366 Fkbi For Biosynthesis Of Methoxymalonyl Extender Un 3e-24
3djl_A541 Crystal Structure Of Alkylation Response Protein E. 4e-18
2wbi_A428 Crystal Structure Of Human Acyl-Coa Dehydrogenase 1 2e-14
3m9v_A439 X-Ray Structure Of A Kijd3 In Complex With Dtdp Len 2e-13
4hr3_A415 Structure Of A Putative Acyl-Coa Dehydrogenase From 2e-13
3mxl_A395 Crystal Structure Of Nitrososynthase From Micromono 1e-12
4doy_A437 Crystal Structure Of Dibenzothiophene Desulfurizati 5e-12
3mkh_A438 Podospora Anserina Nitroalkane Oxidase Length = 438 2e-07
3d9d_A438 Nitroalkane Oxidase: Mutant D402n Crystallized With 8e-06
2c0u_A439 Crystal Structure Of A Covalent Complex Of Nitroalk 8e-06
2reh_A439 Mechanistic And Structural Analyses Of The Roles Of 9e-06
3d9g_A438 Nitroalkane Oxidase: Wild Type Crystallized In A Tr 1e-05
2c12_A439 Crystal Structure Of Nitroalkane Oxidase In Complex 1e-05
3d9f_A438 Nitroalkane Oxidase: Active Site Mutant S276a Cryst 1e-05
2zaf_A439 Mechanistic And Structural Analyses Of The Roles Of 1e-05
2fon_A 683 X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxid 8e-05
>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6 Angstroms Resolution: Structural Basis For Substrate Specificity Length = 394 Back     alignment and structure 
Iteration: 1

 Score =  499 bits (1286), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 240/382 (62%), Positives = 292/382 (76%), Gaps = 7/382 (1%)
Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXX 91
             + Q Q ++++ +F +E++AP+A  ID+SN F      WK +GN  + GITAP +    
Sbjct: 13  LSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGS 72
Query: 92  XXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
                 H + MEEISRASG+VGLSYGAHSNLCINQLVR+G+ AQK+KYLPKLISGE++GA
Sbjct: 73  GLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGA 132
Query: 152 LAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA--GSKG 209
           LAMSEPNAGSDVV MK KA++    YI+NGNK W TNGP A  L+VYAKTD+ A   S+G
Sbjct: 133 LAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDLAAVPASRG 192
Query: 210 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVM 269
           ITAFI+EKGMPGFST++KLDKLGMRGS+TCEL+FE+C +P  N+LG E K     GVYV+
Sbjct: 193 ITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHENK-----GVYVL 247
Query: 270 MSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSS 329
           MSGLDLERLVLA GPLG+MQA LD  +PY+  RE FG+ +G FQ +QGK ADMYT L + 
Sbjct: 248 MSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQLMQGKMADMYTRLMAC 307
Query: 330 RSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRD 389
           R YVY+VA+ CD G    KDCAGVIL +AE ATQV L  IQC GGNGY+N++  GR LRD
Sbjct: 308 RQYVYNVAKACDEGHCTAKDCAGVILYSAECATQVALDGIQCFGGNGYINDFPMGRFLRD 367
Query: 390 AKLYEIGAGTSEIRRMIIGRAL 411
           AKLYEIGAGTSE+RR++IGRA 
Sbjct: 368 AKLYEIGAGTSEVRRLVIGRAF 389
>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa Dehydrogenase Complexed With Acetoacetyl-Coa Length = 388 Back     alignment and structure
>pdb|2VIG|A Chain A, Crystal Structure Of Human Short-Chain Acyl Coa Dehydrogenase Length = 391 Back     alignment and structure
>pdb|1BUC|A Chain A, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase From Megasphaera Elsdenii Length = 383 Back     alignment and structure
>pdb|2DVL|A Chain A, Crystal Structure Of Project Tt0160 From Thermus Thermophilus Hb8 Length = 372 Back     alignment and structure
>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound To Reduced Flavin Adenine Dinucleotide Solved By Combined Iodide Ion Sad Mr Length = 393 Back     alignment and structure
>pdb|2JIF|A Chain A, Structure Of Human Short-Branched Chain Acyl-Coa Dehydrogenase (Acadsb) Length = 404 Back     alignment and structure
>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase From Thermus Thermophilus Hb8 Length = 379 Back     alignment and structure
>pdb|1WS9|A Chain A, Crystal Structure Of Project Id Tt0172 From Thermus Thermophilus Hb8 Length = 387 Back     alignment and structure
>pdb|3MPI|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase Glutaryl-Coa Complex Length = 397 Back     alignment and structure
>pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain Acyl- Coa Dehydrogenase Length = 396 Back     alignment and structure
>pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With 3-Thiaoctanoyl-Coa Length = 396 Back     alignment and structure
>pdb|3MDD|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase From Pig Liver Mitochondria With And Without Substrate Length = 385 Back     alignment and structure
>pdb|2A1T|A Chain A, Structure Of The Human Mcad:etf E165betaa Complex Length = 421 Back     alignment and structure
>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain Acyl- Coa Dehydrogenase Length = 396 Back     alignment and structure
>pdb|2PG0|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From Geobacillus Kaustophilus Length = 385 Back     alignment and structure
>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase Length = 577 Back     alignment and structure
>pdb|3D6B|A Chain A, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei Length = 395 Back     alignment and structure
>pdb|3GQT|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei With Fragment (1,4-Dimethyl-1,2,3,4- Tetrahydroquinoxalin-6-Yl)methylamine Length = 399 Back     alignment and structure
>pdb|3EOM|A Chain A, 2.4 A Crystal Structure Of Native Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei Length = 396 Back     alignment and structure
>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound To Flavin Adenine Dinucleotide Length = 387 Back     alignment and structure
>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain Specificity: Crystal Structure Of Human Very-Long-Chain Acyl-Coa Dehydrogenase Length = 587 Back     alignment and structure
>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa Dehydrogenase (acadvl) Length = 607 Back     alignment and structure
>pdb|3OWA|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With Fad From Bacillus Anthracis Length = 597 Back     alignment and structure
>pdb|1RX0|A Chain A, Crystal Structure Of Isobutyryl-Coa Dehydrogenase Complexed With SubstrateLIGAND. Length = 393 Back     alignment and structure
>pdb|3R7K|A Chain A, Crystal Structure Of A Probable Acyl Coa Dehydrogenase From Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 403 Back     alignment and structure
>pdb|3OIB|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase From Mycobacterium Smegmatis, Iodide Soak Length = 403 Back     alignment and structure
>pdb|3SF6|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From Mycobacterium Smegmatis Length = 403 Back     alignment and structure
>pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From Mycobacterium Smegmatis In Complex With Fadh2 Length = 399 Back     alignment and structure
>pdb|1SIR|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa Dehydrogenase Length = 394 Back     alignment and structure
>pdb|1SIQ|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa Dehydrogenase Length = 392 Back     alignment and structure
>pdb|2R0M|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa Dehydrogenase On Proton Transfer To The Dienolate Intermediate Length = 394 Back     alignment and structure
>pdb|2IX5|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 In Complex With Acetoacetyl-Coa Length = 436 Back     alignment and structure
>pdb|2IX6|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 Length = 449 Back     alignment and structure
>pdb|2EBA|A Chain A, Crystal Structure Of The Putative Glutaryl-coa Dehydrogenase From Thermus Thermophilus Length = 385 Back     alignment and structure
>pdb|1R2J|A Chain A, Fkbi For Biosynthesis Of Methoxymalonyl Extender Unit Of Fk520 Polyketide Immunosuppresant Length = 366 Back     alignment and structure
>pdb|3DJL|A Chain A, Crystal Structure Of Alkylation Response Protein E. Coli Aidb Length = 541 Back     alignment and structure
>pdb|2WBI|A Chain A, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11 Length = 428 Back     alignment and structure
>pdb|3M9V|A Chain A, X-Ray Structure Of A Kijd3 In Complex With Dtdp Length = 439 Back     alignment and structure
>pdb|4HR3|A Chain A, Structure Of A Putative Acyl-Coa Dehydrogenase From Mycobacterium Abscessus Length = 415 Back     alignment and structure
>pdb|3MXL|A Chain A, Crystal Structure Of Nitrososynthase From Micromonospora Carbonacea Var. Africana Length = 395 Back     alignment and structure
>pdb|4DOY|A Chain A, Crystal Structure Of Dibenzothiophene Desulfurization Enzyme C Length = 437 Back     alignment and structure
>pdb|3MKH|A Chain A, Podospora Anserina Nitroalkane Oxidase Length = 438 Back     alignment and structure
>pdb|3D9D|A Chain A, Nitroalkane Oxidase: Mutant D402n Crystallized With 1-Nitrohexane Length = 438 Back     alignment and structure
>pdb|2C0U|A Chain A, Crystal Structure Of A Covalent Complex Of Nitroalkane Oxidase Trapped During Substrate Turnover Length = 439 Back     alignment and structure
>pdb|2REH|A Chain A, Mechanistic And Structural Analyses Of The Roles Of Arg409 And Asp402 In The Reaction Of The Flavoprotein Nitroalkane Oxidase Length = 439 Back     alignment and structure
>pdb|3D9G|A Chain A, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped State Forming A Cyanoadduct With Fad Length = 438 Back     alignment and structure
>pdb|2C12|A Chain A, Crystal Structure Of Nitroalkane Oxidase In Complex With Spermine, A Competitive Inhibitor Length = 439 Back     alignment and structure
>pdb|3D9F|A Chain A, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized With 1- Nitrohexane Length = 438 Back     alignment and structure
>pdb|2ZAF|A Chain A, Mechanistic And Structural Analyses Of The Roles Of Arg409 And Asp402 In The Reaction Of The Flavoprotein Nitroalkane Oxidase Length = 439 Back     alignment and structure
>pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase From Lycopersicon Esculentum (Tomato) Length = 683 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query415
1ivh_A394 Isovaleryl-COA dehydrogenase; oxidoreductase, acyl 0.0
3mpi_A397 Glutaryl-COA dehydrogenase; alpha-beta fold, oxido 0.0
3m9v_A439 FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO 0.0
3mxl_A395 Nitrososynthase; flavin monooxygenase, acyl-COA de 0.0
1r2j_A366 Protein FKBI; polyketide synthase, polyketide, acy 0.0
2vig_A391 Short-chain specific acyl-COA dehydrogenase,; fatt 1e-175
3pfd_A393 Acyl-COA dehydrogenase; structural genomics, seatt 1e-165
2d29_A387 Acyl-COA dehydrogenase; structural genomics, NPPSF 1e-165
1ukw_A379 Acyl-COA dehydrogenase; oxidoreductase, riken stru 1e-165
2jif_A404 Short/branched chain specific acyl-COA dehydrogen; 1e-164
2dvl_A372 Acyl-COA dehydrogenase; structural genomics, NPPSF 1e-164
1buc_A383 Butyryl-COA dehydrogenase; acyl-COA dehydrogenase 1e-164
1egd_A396 Medium chain acyl-COA dehydrogenase; flavoprotein, 1e-163
3nf4_A387 Acyl-COA dehydrogenase; seattle structural genomic 1e-163
3r7k_A403 Probable acyl COA dehydrogenase; ssgcid, structura 1e-161
2pg0_A385 Acyl-COA dehydrogenase; GK1316, geobacillus kausto 1e-161
3p4t_A403 Putative acyl-COA dehydrogenase; ssgcid, structura 1e-159
1rx0_A393 Acyl-COA dehydrogenase family member 8, mitochondr 1e-157
3owa_A 597 Acyl-COA dehydrogenase; structural genomics, cente 1e-152
2z1q_A 577 Acyl-COA dehydrogenase; FAD, structural genomics, 1e-152
2uxw_A 607 VERY-long-chain specific acyl-COA dehydrogenase; f 1e-149
2c12_A439 Nitroalkane oxidase; oxidoreductase, flavoenzyme, 1e-143
3mkh_A438 Nitroalkane oxidase; oxidoreductase flavoenzyme, a 1e-141
3ii9_A396 Glutaryl-COA dehydrogenase; slipchip, microfluidic 1e-137
2ix5_A436 Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, 1e-135
3swo_A399 Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d 1e-132
2eba_A385 Putative glutaryl-COA dehydrogenase; thermus therm 1e-131
3sf6_A403 Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB 1e-130
1siq_A392 GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog 1e-123
2ddh_A 661 Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl 3e-70
2jbr_A422 P-hydroxyphenylacetate hydroxylase C2 oxygenase C; 3e-66
1w07_A 659 Acyl-COA oxidase; oxidoreductase, peroxisomal beta 3e-63
2wbi_A428 Acyl-COA dehydrogenase family member 11; human, ph 1e-47
3djl_A541 Protein AIDB; alpha helix, beta-barrel, FAD, flavo 1e-46
2rfq_A394 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1 2e-46
3hwc_A515 Chlorophenol-4-monooxygenase component 2; beta bar 1e-35
2or0_A414 Hydroxylase; APC7385, rhodococcus SP. RHA1, struct 1e-34
2yyk_A481 4-hydroxyphenylacetate-3-hydroxylase; structurome, 1e-26
1u8v_A490 Gamma-aminobutyrate metabolism dehydratase/isomera 2e-23
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 394 Back     alignment and structure
 Score =  668 bits (1725), Expect = 0.0
 Identities = 248/385 (64%), Positives = 300/385 (77%), Gaps = 7/385 (1%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGL 91
             + Q Q ++++ +F +E++AP+A  ID+SN F      WK +GN  + GITAP +YGG 
Sbjct: 13  LSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGS 72

Query: 92  GLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
           GLGYL H + MEEISRASG+VGLSYGAHSNLCINQLVR+G+ AQK+KYLPKLISGE++GA
Sbjct: 73  GLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGA 132

Query: 152 LAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA--GSKG 209
           LAMSEPNAGSDVV MK KA++    YI+NGNK W TNGP A  L+VYAKTD+ A   S+G
Sbjct: 133 LAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDLAAVPASRG 192

Query: 210 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVM 269
           ITAFI+EKGMPGFST++KLDKLGMRGS+TCEL+FE+C +P  N+LG E K     GVYV+
Sbjct: 193 ITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHENK-----GVYVL 247

Query: 270 MSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSS 329
           MSGLDLERLVLA GPLG+MQA LD  +PY+  RE FG+ +G FQ +QGK ADMYT L + 
Sbjct: 248 MSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQLMQGKMADMYTRLMAC 307

Query: 330 RSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRD 389
           R YVY+VA+ CD G    KDCAGVIL +AE ATQV L  IQC GGNGY+N++  GR LRD
Sbjct: 308 RQYVYNVAKACDEGHCTAKDCAGVILYSAECATQVALDGIQCFGGNGYINDFPMGRFLRD 367

Query: 390 AKLYEIGAGTSEIRRMIIGRALLKQ 414
           AKLYEIGAGTSE+RR++IGRA    
Sbjct: 368 AKLYEIGAGTSEVRRLVIGRAFNAD 392
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A* Length = 397 Back     alignment and structure
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata} Length = 439 Back     alignment and structure
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea} Length = 395 Back     alignment and structure
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1 Length = 366 Back     alignment and structure
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A* Length = 391 Back     alignment and structure
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile} Length = 393 Back     alignment and structure
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A* Length = 387 Back     alignment and structure
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 Length = 379 Back     alignment and structure
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens} Length = 404 Back     alignment and structure
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus} Length = 372 Back     alignment and structure
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1 Length = 383 Back     alignment and structure
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A* Length = 396 Back     alignment and structure
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile} Length = 387 Back     alignment and structure
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus} Length = 403 Back     alignment and structure
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus} Length = 385 Back     alignment and structure
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A* Length = 403 Back     alignment and structure
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 393 Back     alignment and structure
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Length = 597 Back     alignment and structure
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus} Length = 577 Back     alignment and structure
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Length = 607 Back     alignment and structure
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A* Length = 439 Back     alignment and structure
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina} Length = 438 Back     alignment and structure
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A Length = 396 Back     alignment and structure
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A* Length = 436 Back     alignment and structure
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis} Length = 399 Back     alignment and structure
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus} Length = 385 Back     alignment and structure
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis} Length = 403 Back     alignment and structure
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A* Length = 392 Back     alignment and structure
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A* Length = 661 Back     alignment and structure
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A* Length = 422 Back     alignment and structure
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A* Length = 659 Back     alignment and structure
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens} Length = 428 Back     alignment and structure
>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A* Length = 541 Back     alignment and structure
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A Length = 394 Back     alignment and structure
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia} Length = 515 Back     alignment and structure
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP} Length = 414 Back     alignment and structure
>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A* Length = 481 Back     alignment and structure
>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1 Length = 490 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query415
2jif_A404 Short/branched chain specific acyl-COA dehydrogen; 100.0
3r7k_A403 Probable acyl COA dehydrogenase; ssgcid, structura 100.0
1ukw_A379 Acyl-COA dehydrogenase; oxidoreductase, riken stru 100.0
3pfd_A393 Acyl-COA dehydrogenase; structural genomics, seatt 100.0
2d29_A387 Acyl-COA dehydrogenase; structural genomics, NPPSF 100.0
3p4t_A403 Putative acyl-COA dehydrogenase; ssgcid, structura 100.0
3nf4_A387 Acyl-COA dehydrogenase; seattle structural genomic 100.0
1buc_A383 Butyryl-COA dehydrogenase; acyl-COA dehydrogenase 100.0
1egd_A396 Medium chain acyl-COA dehydrogenase; flavoprotein, 100.0
2vig_A391 Short-chain specific acyl-COA dehydrogenase,; fatt 100.0
2dvl_A372 Acyl-COA dehydrogenase; structural genomics, NPPSF 100.0
2pg0_A385 Acyl-COA dehydrogenase; GK1316, geobacillus kausto 100.0
1rx0_A393 Acyl-COA dehydrogenase family member 8, mitochondr 100.0
3ii9_A396 Glutaryl-COA dehydrogenase; slipchip, microfluidic 100.0
1ivh_A394 Isovaleryl-COA dehydrogenase; oxidoreductase, acyl 100.0
3sf6_A403 Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB 100.0
3swo_A399 Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d 100.0
2eba_A385 Putative glutaryl-COA dehydrogenase; thermus therm 100.0
2ix5_A436 Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, 100.0
3mpi_A397 Glutaryl-COA dehydrogenase; alpha-beta fold, oxido 100.0
1r2j_A366 Protein FKBI; polyketide synthase, polyketide, acy 100.0
4hr3_A415 Putative acyl-COA dehydrogenase; ssgcid, seattle s 100.0
3owa_A 597 Acyl-COA dehydrogenase; structural genomics, cente 100.0
1siq_A392 GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog 100.0
2z1q_A 577 Acyl-COA dehydrogenase; FAD, structural genomics, 100.0
2uxw_A 607 VERY-long-chain specific acyl-COA dehydrogenase; f 100.0
3mkh_A438 Nitroalkane oxidase; oxidoreductase flavoenzyme, a 100.0
2c12_A439 Nitroalkane oxidase; oxidoreductase, flavoenzyme, 100.0
2wbi_A428 Acyl-COA dehydrogenase family member 11; human, ph 100.0
3mxl_A395 Nitrososynthase; flavin monooxygenase, acyl-COA de 100.0
2or0_A414 Hydroxylase; APC7385, rhodococcus SP. RHA1, struct 100.0
2jbr_A422 P-hydroxyphenylacetate hydroxylase C2 oxygenase C; 100.0
3m9v_A439 FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO 100.0
2rfq_A394 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1 100.0
1w07_A 659 Acyl-COA oxidase; oxidoreductase, peroxisomal beta 100.0
3djl_A541 Protein AIDB; alpha helix, beta-barrel, FAD, flavo 100.0
2ddh_A 661 Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl 100.0
1u8v_A490 Gamma-aminobutyrate metabolism dehydratase/isomera 100.0
2yyk_A481 4-hydroxyphenylacetate-3-hydroxylase; structurome, 100.0
3hwc_A515 Chlorophenol-4-monooxygenase component 2; beta bar 100.0
4g5e_A517 2,4,6-trichlorophenol 4-monooxygenase; oxidoreduct 99.97
3owa_A597 Acyl-COA dehydrogenase; structural genomics, cente 95.64
2uxw_A607 VERY-long-chain specific acyl-COA dehydrogenase; f 84.43
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=2e-74  Score=570.11  Aligned_cols=396  Identities=33%  Similarity=0.558  Sum_probs=355.7

Q ss_pred             cccchhhhhhhccccccCCCCCCCCCCCChHHHHHHHHHHHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhcCCCCCC
Q 014993            4 LLGARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGIT   83 (415)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~l~   83 (415)
                      +++..+|++..+..++.  +.|     .+++++.++++.+++|+++++.|...+.|+++.+|+  ++|++|++.||+++.
T Consensus         8 ~~~~~~~~~~~~~~~~~--~~~-----~~~~e~~~l~~~~r~~~~~~~~p~~~~~d~~~~~~~--~~~~~l~e~Gl~~l~   78 (404)
T 2jif_A            8 SSGVDLGTENLYFQSMA--PLQ-----TFTDEEMMIKSSVKKFAQEQIAPLVSTMDENSKMEK--SVIQGLFQQGLMGIE   78 (404)
T ss_dssp             ----------------C--CTT-----CCCHHHHHHHHHHHHHHHHHTGGGHHHHHHHTCCCH--HHHHHHHHTTTTSSS
T ss_pred             cchhhhhhhHHhccccc--ccC-----CCCHHHHHHHHHHHHHHHHhCcccHHHHhhcCCCCH--HHHHHHHHCCCCccC
Confidence            56677888888875332  222     245666699999999999999998888888899999  999999999999999


Q ss_pred             CCcCCCCCCCCHHHHHHHHHHHHhccccchhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCC
Q 014993           84 APQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDV  163 (415)
Q Consensus        84 ~P~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~  163 (415)
                      +|++|||.|+++.+.+.++|++++.|+++++.+..|..++..+|..+|+++||++|+|++.+|. ++++++|||++|||.
T Consensus        79 ~P~e~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~g~-~~~~a~tEp~~Gsd~  157 (404)
T 2jif_A           79 VDPEYGGTGASFLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTTEK-VGSFCLSEAGAGSDS  157 (404)
T ss_dssp             SCGGGTCCCCCHHHHHHHHHHHHTTCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHHTC-CEEEECCBTTBSSSG
T ss_pred             CchhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCC-cceEEecCCCCCCCh
Confidence            9999999999999999999999999999998887776566778889999999999999999985 789999999999999


Q ss_pred             CCceeEEEEeCCEEEEEeEeecccCCCCCCEEEEEEEeCCCCCCCCeEEEEEecCCCCeeeccccccccCCCCCceeEEE
Q 014993          164 VGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVF  243 (415)
Q Consensus       164 ~~~~t~a~~~~~g~~LnG~k~~vs~~~~ad~~~v~a~~~~~~~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f  243 (415)
                      ..++|+|++++|||+|||+|.|+||+..||+++|+|+++++++..++++|+||++.|||++.+.|+++|++++++++|+|
T Consensus       158 ~~~~t~A~~~g~g~vlnG~K~~is~a~~Ad~~~v~ar~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~f  237 (404)
T 2jif_A          158 FALKTRADKEGDYYVLNGSKMWISSAEHAGLFLVMANVDPTIGYKGITSFLVDRDTPGLHIGKPENKLGLRASSTCPLTF  237 (404)
T ss_dssp             GGCCCEEEEETTEEEEEEEEEEEETTTTCSEEEEEEESCGGGGGGGEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEE
T ss_pred             hhceeEEEEeCCEEEEEeEEEeecCCcccCEEEEEEEeCCCCCCCceEEEEEecCCCCeEeccCcccccCCCCceEEEEE
Confidence            99999999999999999999999999999999999998654445689999999999999999999999999999999999


Q ss_pred             eeeeeCCCCcccCCCCCCCcchHHHHHhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHH
Q 014993          244 ENCFVPNENVLGQEGKGCNSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMY  323 (415)
Q Consensus       244 ~~v~Vp~~~llg~~~~~~~~~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~  323 (415)
                      |||+||+++++|.++.     |+......++.+|+.+++.++|+++++++.+++|+++|+|||+||+++|.+|++|++|.
T Consensus       238 d~v~Vp~~~~lg~~g~-----g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG~~i~~~q~vq~~la~~~  312 (404)
T 2jif_A          238 ENVKVPEANILGQIGH-----GYKYAIGSLNEGRIGIAAQMLGLAQGCFDYTIPYIKERIQFGKRLFDFQGLQHQVAHVA  312 (404)
T ss_dssp             EEEEEEGGGEESSTTC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHH
T ss_pred             ccEEECHHHcCCCCCc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCcccccHHHHHHHHHHH
Confidence            9999999999998888     99888888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCCCchhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHHHH
Q 014993          324 TALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIR  403 (415)
Q Consensus       324 ~~l~aar~~~~~aa~~~d~~~~~~~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~  403 (415)
                      ++++++|++++++++.++.+.+....++++|+++++.+.++++.++|+|||.||+++++++|+|||++...+++|+++++
T Consensus       313 ~~~~aar~~~~~aa~~~~~g~~~~~~~~~aK~~a~e~a~~v~~~a~q~~Gg~G~~~~~~~~r~~Rda~~~~i~~Gt~ei~  392 (404)
T 2jif_A          313 TQLEAARLLTYNAARLLEAGKPFIKEASMAKYYASEIAGQTTSKCIEWMGGVGYTKDYPVEKYFRDAKIGTIYEGASNIQ  392 (404)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHGGGGTTTSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHHHHHHHHHHHHHHHhcCcceecCCCcHHHHHhhccceeecCCHHHHH
Confidence            99999999999999999988776778899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhc
Q 014993          404 RMIIGRALLKQ  414 (415)
Q Consensus       404 ~~~i~~~l~~~  414 (415)
                      ++.|++.+++.
T Consensus       393 ~~~ia~~~~~~  403 (404)
T 2jif_A          393 LNTIAKHIDAE  403 (404)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhhc
Confidence            99999998763
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus} Back     alignment and structure
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile} Back     alignment and structure
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A* Back     alignment and structure
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A* Back     alignment and structure
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile} Back     alignment and structure
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A* Back     alignment and structure
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A* Back     alignment and structure
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus} Back     alignment and structure
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus} Back     alignment and structure
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A Back     alignment and structure
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis} Back     alignment and structure
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis} Back     alignment and structure
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus} Back     alignment and structure
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A* Back     alignment and structure
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A* Back     alignment and structure
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>4hr3_A Putative acyl-COA dehydrogenase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: FAD; 1.80A {Mycobacterium abscessus} Back     alignment and structure
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Back     alignment and structure
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A* Back     alignment and structure
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus} Back     alignment and structure
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Back     alignment and structure
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina} Back     alignment and structure
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A* Back     alignment and structure
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens} Back     alignment and structure
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea} Back     alignment and structure
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP} Back     alignment and structure
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A* Back     alignment and structure
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata} Back     alignment and structure
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A Back     alignment and structure
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A* Back     alignment and structure
>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A* Back     alignment and structure
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A* Back     alignment and structure
>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A* Back     alignment and structure
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia} Back     alignment and structure
>4g5e_A 2,4,6-trichlorophenol 4-monooxygenase; oxidoreductase; 2.50A {Cupriavidus necator JMP134} Back     alignment and structure
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Back     alignment and structure
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 415
d1ivha2236 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM 2e-72
d1jqia2231 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM do 3e-59
d1rx0a2231 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {H 1e-53
d2d29a2233 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus 7e-52
d3mdea2231 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydroge 9e-52
d1ukwa2227 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydroge 1e-51
d1buca2232 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM do 8e-48
d1siqa2236 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH 7e-44
d2ddha3267 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, 4e-38
d1w07a3271 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domai 1e-37
d1buca1151 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C- 1e-33
d1ukwa1152 a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydro 2e-32
d1ivha1151 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, 3e-32
d2d29a1153 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Therm 1e-30
d1jqia1153 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C- 2e-30
d2c12a2259 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium ox 3e-30
d1r2ja2210 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygro 4e-30
d1u8va2275 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase 1e-29
d1w07a1189 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, do 8e-29
d1rx0a1153 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase 8e-27
d3mdea1154 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydro 7e-25
d2ddha1183 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase- 4e-24
d1siqa1154 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GC 8e-24
d1r2ja1153 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hy 1e-23
d2c12a1170 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium 5e-22
>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]} Length = 236 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isovaleryl-coa dehydrogenase, NM domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  225 bits (573), Expect = 2e-72
 Identities = 148/228 (64%), Positives = 183/228 (80%), Gaps = 2/228 (0%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGL 91
             + Q Q ++++ +F +E++AP+A  ID+SN F      WK +GN  + GITAP +YGG 
Sbjct: 8   LSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGS 67

Query: 92  GLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
           GLGYL H + MEEISRASG+VGLSYGAHSNLCINQLVR+G+ AQK+KYLPKLISGE++GA
Sbjct: 68  GLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGA 127

Query: 152 LAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAG--SKG 209
           LAMSEPNAGSDVV MK KA++    YI+NGNK W TNGP A  L+VYAKTD+ A   S+G
Sbjct: 128 LAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDLAAVPASRG 187

Query: 210 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQE 257
           ITAFI+EKGMPGFST++KLDKLGMRGS+TCEL+FE+C +P  N+LG E
Sbjct: 188 ITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHE 235
>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 231 Back     information, alignment and structure
>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 231 Back     information, alignment and structure
>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 233 Back     information, alignment and structure
>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM domains {Pig (Sus scrofa) [TaxId: 9823]} Length = 231 Back     information, alignment and structure
>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]} Length = 227 Back     information, alignment and structure
>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]} Length = 232 Back     information, alignment and structure
>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Length = 236 Back     information, alignment and structure
>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 267 Back     information, alignment and structure
>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 271 Back     information, alignment and structure
>d1buca1 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C-domain {Megasphaera elsdenii [TaxId: 907]} Length = 151 Back     information, alignment and structure
>d1ukwa1 a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydrogenase, C-domain {Thermus thermophilus [TaxId: 274]} Length = 152 Back     information, alignment and structure
>d1ivha1 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure
>d2d29a1 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 153 Back     information, alignment and structure
>d1jqia1 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 153 Back     information, alignment and structure
>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Length = 259 Back     information, alignment and structure
>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Length = 210 Back     information, alignment and structure
>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains {Clostridium aminobutyricum [TaxId: 33953]} Length = 275 Back     information, alignment and structure
>d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 189 Back     information, alignment and structure
>d1rx0a1 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 153 Back     information, alignment and structure
>d3mdea1 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydrogenase, C-domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 154 Back     information, alignment and structure
>d2ddha1 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 183 Back     information, alignment and structure
>d1siqa1 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Length = 154 Back     information, alignment and structure
>d1r2ja1 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Length = 153 Back     information, alignment and structure
>d2c12a1 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Length = 170 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query415
d1jqia2231 Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus 100.0
d1ukwa2227 Medium chain acyl-CoA dehydrogenase, NM domains {T 100.0
d3mdea2231 Medium chain acyl-CoA dehydrogenase, NM domains {P 100.0
d2d29a2233 Acyl-CoA dehydrogenase {Thermus thermophilus [TaxI 100.0
d1ivha2236 Isovaleryl-coa dehydrogenase, NM domains {Human (H 100.0
d1rx0a2231 Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) 100.0
d1r2ja2210 Protein FkbI {Streptomyces hygroscopicus [TaxId: 1 100.0
d1siqa2236 Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapie 100.0
d1buca2232 Butyryl-CoA dehydrogenase, NM domains {Megasphaera 100.0
d2c12a2259 Nitroalkane oxidase {Fusarium oxysporum [TaxId: 55 100.0
d2ddha3267 Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 { 99.97
d1siqa1154 Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapie 99.97
d1ivha1151 Isovaleryl-CoA dehydrogenase, C-domain {Human (Hom 99.97
d1jqia1153 Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus n 99.97
d3mdea1154 Medium chain acyl-CoA dehydrogenase, C-domain {Pig 99.96
d2d29a1153 Acyl-CoA dehydrogenase {Thermus thermophilus [TaxI 99.96
d1w07a3271 Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale 99.96
d1r2ja1153 Protein FkbI {Streptomyces hygroscopicus [TaxId: 1 99.96
d1rx0a1153 Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) 99.96
d1ukwa1152 Medium chain acyl-CoA dehydrogenase, C-domain {The 99.96
d2c12a1170 Nitroalkane oxidase {Fusarium oxysporum [TaxId: 55 99.96
d1buca1151 Butyryl-CoA dehydrogenase, C-domain {Megasphaera e 99.96
d1w07a1189 Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale 99.93
d2ddha1183 Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 { 99.91
d1u8va2275 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains 99.87
d1u8va1215 4-hydroxybutyryl-CoA dehydratase AbfD, C-terminal 96.46
>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Butyryl-CoA dehydrogenase, NM domains
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.7e-47  Score=347.35  Aligned_cols=228  Identities=36%  Similarity=0.659  Sum_probs=215.1

Q ss_pred             CCCChHHHHHHHHHHHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhc
Q 014993           29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA  108 (415)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~~  108 (415)
                      +.-++|++++|++.+|+|+++++.|.+.++|+.+.+|.  +.|++|+++||+++.+|++|||.|+++.+...++|++++.
T Consensus         4 ~~~L~ee~~~l~~~~r~f~~~~i~p~a~~~d~~~~~p~--e~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~~~ee~~~~   81 (231)
T d1jqia2           4 SVELPETHQMLRQTCRDFAEKELVPIAAQLDKEHLFPT--SQVKKMGELGLLAMDVPEELSGAGLDYLAYSIALEEISRG   81 (231)
T ss_dssp             CSCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCH--HHHHHHHHHTTTSSSSCGGGTCCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhChHHHHHHHhcCCCCH--HHHHHHHHhCCcccccccccCCCchhHHHHHHHHHHHHhh
Confidence            45566777799999999999999999999999999999  9999999999999999999999999999999999999999


Q ss_pred             cccchhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCEEEEEeEeecccC
Q 014993          109 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTN  188 (415)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~  188 (415)
                      +.+.++....|...+...+..+|+++||++|||++++|+.++|+++|||++|||...+.|+|++++|+|+|||+|.|||+
T Consensus        82 ~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~g~~~~~~a~tEp~~gsd~~~~~t~a~~~~~~~~lnG~K~~vt~  161 (231)
T d1jqia2          82 CASTGVIMSVNNSLYLGPILKFGSSQQKQQWITPFTNGDKIGCFALSEPGNGSDAGAASTTAREEGDSWVLNGTKAWITN  161 (231)
T ss_dssp             CHHHHHHHHHHHHTTHHHHHHHCCHHHHHHHTGGGSSSSCCEEEECCBTTBSSSTTCCCCEEEECSSEEEEEEEEEEEET
T ss_pred             ccccccceeeeccchhhhhhhcCCHHHHHHHhCcccCCCccccceeccCCCCccCcccceEEEEECCEEEEeeeeeeEee
Confidence            98888887777656788899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEEeCCCCCCCCeEEEEEecCCCCeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCC
Q 014993          189 GPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEG  258 (415)
Q Consensus       189 ~~~ad~~~v~a~~~~~~~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~  258 (415)
                      +..+|++++.+++++.++..++++|+||++.|||++.+.|+++|+|++++++|+||||+||++++||++|
T Consensus       162 ~~~a~~~~v~a~~~~~~~~~g~~~~~Vp~~~~Gv~i~~~~~~~G~r~~~~~~v~fd~v~Vp~~~~lG~~G  231 (231)
T d1jqia2         162 SWEASATVVFASTDRSRQNKGISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPG  231 (231)
T ss_dssp             TTTCSEEEEEEESCGGGGGGSEEEEEEESSCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTT
T ss_pred             cccccccccccccccccccCCceEEEEeCCCCCeEECCccCccccCCCceEEEEEeeEEEcHHHCCCCCC
Confidence            9999999999998766666789999999999999999999999999999999999999999999999874
>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM domains {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Back     information, alignment and structure
>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]} Back     information, alignment and structure
>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Back     information, alignment and structure
>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1siqa1 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ivha1 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jqia1 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d3mdea1 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydrogenase, C-domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2d29a1 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1r2ja1 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Back     information, alignment and structure
>d1rx0a1 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ukwa1 a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydrogenase, C-domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2c12a1 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Back     information, alignment and structure
>d1buca1 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C-domain {Megasphaera elsdenii [TaxId: 907]} Back     information, alignment and structure
>d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2ddha1 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains {Clostridium aminobutyricum [TaxId: 33953]} Back     information, alignment and structure
>d1u8va1 a.29.3.1 (A:276-490) 4-hydroxybutyryl-CoA dehydratase AbfD, C-terminal domain {Clostridium aminobutyricum [TaxId: 33953]} Back     information, alignment and structure