Citrus Sinensis ID: 014997

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410----
Protein Sequence
MADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARAALPVEAAV
Secondary Structure (PSIPRED)
cccccEEEEcccccccccccccccccccccccccccccccccccccccccccHHHHHHcccEEEccccEEEEEccccEEEcccccEEccccEEEcccccccccccccccccccEEEEccHHHHHHHHHHHHccccEEEEcccHHHHHHHHHHHHccccEEEEccccccccccccHHHHHHHHHHHHHcccEEEcccEEEEEEEcccccEEEEEcccccEEEccEEEEccccccccHHHHHcccccccccEEEccccccccccEEEcccccccccccccccEEEccHHHHHHHHHHHHHHHHcccccccccccEEEccccccccccccEEEEEEEcccccEEEEccccccEEEEEEEccEEEEEEEEcccHHHHHHHHHHHHccccccHHHHccccccHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEccccccccccccccHHHHcccccccccccccccccccccEEccHHHHHHcccEEEEccEEEEEcccccEEEEccccEEEccEEEEEccccccccccccccccccEEEEEcHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHHccccEEEEEccccHHHHHccHHHHHHHHHHHHHcccEEEEcEEEEEEEEccccEEEEEEEccccEEcccEEEEEEcccccHHHHHHccccEccccEEEccccccccccEEEEcccccccccccccEEEEEccHHHHHHHHHHHHHHHcccccccccccEEEcccccccEEEccEEEEcccccccEEEEEccccccEEEEEEEccEEEEEEEccccHHHHHHHHHHHHccccccHHHHccccccHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
madgrlcivskeayapyerpaltkgylfpldkkparlpgfhtcvgsggerqtpewykekgiemiyqdpvtsidiEKQTLITNSGKLLKYGSLIvatgctasrfpekiggylpgvhyirdVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVgwkldttiifpenhllqrlftpSLAQRYEQLYQQNGVKFVKGASiknleagsdgrVAAVkledgstidadtivigigakptvspfervglnssvggiqvdgqfrtrmpgifaigdvaafplkmydrtarveHVDHARQSAQHCIKALLSAQthtydylpyFYSRVFEYEGSPRKVWWQFFgdnvgetieignfdpkiatFWIDSGKLKGVlvesgspeefqllptlarsqpfvdkakLQQASSVEEALEIARAALPVEAAV
Flexible Loop (DISEMBL)
madgrlcivskeayapyerpaltkGYLFPLDKKPARLPGFHtcvgsggerqtpeWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIknleagsdGRVAAVKledgstidaDTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARAALPVEAAV
Low Complexity Region (SEG)
MADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKvvvvgggYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARAALPVEAAV
Disordered region (IsUnstruct)
*****LCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLVE************************************************
Disordered Region (DISOPRED)
*ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALE************
Disordered Region (DISEMBL)
MADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEH********QHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARAALPVEAAV
Disordered Region (DISPRO)
***GRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARAA*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARAALPVEAAV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	414	2.2.26 [Sep-21-2011]
P92947	493	Monodehydroascorbate redu	yes	no	0.985	0.827	0.833	0.0
Q40977	433	Monodehydroascorbate redu	N/A	no	0.903	0.863	0.453	2e-96
Q43497	433	Monodehydroascorbate redu	N/A	no	0.896	0.856	0.449	4e-96
Q9LK94	488	Probable monodehydroascor	no	no	0.908	0.770	0.427	2e-92
Q93WJ8	435	Probable monodehydroascor	no	no	0.942	0.896	0.421	6e-92
Q42711	434	Monodehydroascorbate redu	N/A	no	0.910	0.868	0.450	9e-91
Q9LFA3	434	Probable monodehydroascor	no	no	0.896	0.854	0.428	2e-87
Q9SR59	441	Probable monodehydroascor	no	no	0.900	0.845	0.411	1e-85
P43494	427	Rhodocoxin reductase OS=R	yes	no	0.722	0.700	0.319	3e-36
P16640	422	Putidaredoxin reductase O	yes	no	0.734	0.720	0.302	4e-35

>sp|P92947|MDARP_ARATH Monodehydroascorbate reductase, chloroplastic OS=Arabidopsis thaliana GN=At1g63940 PE=2 SV=3

 Score =  729 bits (1882), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/408 (83%), Positives = 377/408 (92%)

Query: 1   MADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKG 60
           MADGRLCIV+KEAYAPYERPALTK YLFP +KKPARLPGFHTCVG GGERQTP+WYKEKG
Sbjct: 84  MADGRLCIVTKEAYAPYERPALTKAYLFPPEKKPARLPGFHTCVGGGGERQTPDWYKEKG 143

Query: 61  IEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDV 120
           IE+IY+DPV   D EKQTL T++GK LKYGSLI+ATGCTASRFP+KIGG+LPGVHYIR+V
Sbjct: 144 IEVIYEDPVAGADFEKQTLTTDAGKQLKYGSLIIATGCTASRFPDKIGGHLPGVHYIREV 203

Query: 121 ADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR 180
           ADAD+LI+SL KAKK+V+VGGGYIGMEVAAAAV W LDTTI+FPE+ LLQRLFTPSLAQ+
Sbjct: 204 ADADSLIASLGKAKKIVIVGGGYIGMEVAAAAVAWNLDTTIVFPEDQLLQRLFTPSLAQK 263

Query: 181 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER 240
           YE+LY+QNGVKFVKGASI NLEAGSDGRV+AVKL DGSTI+ADT+VIGIGAKP + PFE 
Sbjct: 264 YEELYRQNGVKFVKGASINNLEAGSDGRVSAVKLADGSTIEADTVVIGIGAKPAIGPFET 323

Query: 241 VGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 300
           + +N S+GGIQVDG FRT  PGIFAIGDVAAFPLK+YDR  RVEHVDHAR+SAQHC+K+L
Sbjct: 324 LAMNKSIGGIQVDGLFRTSTPGIFAIGDVAAFPLKIYDRMTRVEHVDHARRSAQHCVKSL 383

Query: 301 LSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKL 360
           L+A T TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGET+E+GNFDPKIATFWI+SG+L
Sbjct: 384 LTAHTDTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETVEVGNFDPKIATFWIESGRL 443

Query: 361 KGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARAAL 408
           KGVLVESGSPEEFQLLP LARSQP VDKAKL  ASSVEEALEIA+AAL
Sbjct: 444 KGVLVESGSPEEFQLLPKLARSQPLVDKAKLASASSVEEALEIAQAAL 491

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 6EC: .EC: 5EC: .EC: 4

>sp|Q40977|MDAR_PEA Monodehydroascorbate reductase OS=Pisum sativum PE=1 SV=1

 Score =  353 bits (905), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 180/397 (45%), Positives = 251/397 (63%), Gaps = 23/397 (5%)

Query: 4   GRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEM 63
           G L I+SKEA APYERPAL+K YLFP  + PARLPGFHTCVGSGGER  PEWY EKGI++
Sbjct: 31  GELAIISKEAVAPYERPALSKAYLFP--ESPARLPGFHTCVGSGGERLLPEWYSEKGIQL 88

Query: 64  IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE--KIGGYLPGVHYIRDVA 121
                + S D+  + L + +G+   Y +L++ATG    R  +   IG     + Y+R+V 
Sbjct: 89  YLSTEIVSADLAAKFLKSANGEHFDYQTLVIATGSAVIRLTDFGVIGANAKNIFYLREVD 148

Query: 122 DADALISSLEKAK--KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQ 179
           DAD L  ++++ K  K VVVGGGYIG+E++A      LD T+++PE   + RLFT  +A 
Sbjct: 149 DADKLYEAIKRKKNAKRVVVGGGYIGLELSAVLKLNDLDVTMVYPEPWCMPRLFTSEIAA 208

Query: 180 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE 239
            YE  Y   G+  +KG       A SDG V  VKL+DG  ++AD +++G+G +P +S F 
Sbjct: 209 FYEGYYANKGINIIKGTVAVGFTANSDGEVKEVKLKDGRVLEADIVIVGVGGRPQISLF- 267

Query: 240 RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKA 299
           +  +    GGI+ D  F+T +P ++A+GDVA FPLK+Y+   RVEHVDHAR+SA+   KA
Sbjct: 268 KGQVEEQHGGIKTDSFFKTSVPDVYAVGDVATFPLKLYNDVRRVEHVDHARKSAEQAAKA 327

Query: 300 LLSA----QTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFD-----PKI 350
           + +A        YDYLPYFYSR F+       + WQF+GDNVGET+  G+ D     PK 
Sbjct: 328 IFAADVGKSVEEYDYLPYFYSRSFD-------LSWQFYGDNVGETVLFGDNDPASSKPKF 380

Query: 351 ATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVD 387
            T+WI  GK+ G  +E G+P+E + +  +AR++P V+
Sbjct: 381 GTYWIKEGKVVGAFLEGGTPDENKAIAKVARAKPAVE 417

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Pisum sativum (taxid: 3888)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q43497|MDAR_SOLLC Monodehydroascorbate reductase OS=Solanum lycopersicum GN=AFRR PE=1 SV=1

 Score =  352 bits (902), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 177/394 (44%), Positives = 251/394 (63%), Gaps = 23/394 (5%)

Query: 4   GRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEM 63
           G L I+SKEA APYERPAL+K YLFP  +  ARLPGFH CVGSGGERQ PEWY EKGI +
Sbjct: 32  GELAIISKEAVAPYERPALSKAYLFP--EGAARLPGFHVCVGSGGERQLPEWYAEKGISL 89

Query: 64  IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE--KIGGYLPGVHYIRDVA 121
           I    +   D+  +TL++ +G+  KY +L++ATG T  +  +    G     + Y+R++ 
Sbjct: 90  ILSTEIVKADLASKTLVSAAGESFKYQTLVIATGTTVLKLSDFGVQGADSKNIFYLREID 149

Query: 122 DADALISSLEKAK--KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQ 179
           DAD L+ +L+  K  K VVVGGGYIG+E++A      ++  +++PE   + RLFT  +A 
Sbjct: 150 DADQLVEALKAKKNGKAVVVGGGYIGLELSAVLRLNNIEVNMVYPEPWCMPRLFTEGIAA 209

Query: 180 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE 239
            YE  Y+  GV  +KG      +   +G V  VKL+DG  ++AD +V+G+GA+P  + F 
Sbjct: 210 FYEGYYKNKGVNIIKGTVAVGFDTHPNGEVKEVKLKDGRVLEADIVVVGVGARPLTTLF- 268

Query: 240 RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKA 299
           +  +    GGI+ D  F+T +P ++A+GDVA FPLKMY+   RVEHVDH+R+SA+  +KA
Sbjct: 269 KGQVEEEKGGIKTDAFFKTSVPDVYAVGDVATFPLKMYNEIRRVEHVDHSRKSAEQAVKA 328

Query: 300 LLSAQ----THTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIAT--- 352
           + +++       YDYLPYFYSR F+       + WQF+GDNVGET+  G+ DP  AT   
Sbjct: 329 IFASEQGKSVDEYDYLPYFYSRAFD-------LSWQFYGDNVGETVLFGDADPNSATHKF 381

Query: 353 --FWIDSGKLKGVLVESGSPEEFQLLPTLARSQP 384
             +WI  GK+ G  +ESGSPEE + +  +A+ QP
Sbjct: 382 GQYWIKDGKIVGAFLESGSPEENKAIAKVAKVQP 415

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Solanum lycopersicum (taxid: 4081)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q9LK94|MDAR2_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 2 OS=Arabidopsis thaliana GN=At3g27820 PE=2 SV=1

 Score =  339 bits (870), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 168/393 (42%), Positives = 253/393 (64%), Gaps = 17/393 (4%)

Query: 1   MADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKG 60
           ++DG LCI+S+E  APYERPAL+KG+L P  + PARLP FHTCVG+  E+ TP+WYK+ G
Sbjct: 28  VSDGELCIISEEPVAPYERPALSKGFLLP--EAPARLPSFHTCVGANDEKLTPKWYKDHG 85

Query: 61  IEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE--KIGGYLPGVHYIR 118
           IE++    V S+D+ ++TL++++G+ + Y  LI+ATG  A +  E    G     V Y+R
Sbjct: 86  IELVLGTRVKSVDVRRKTLLSSTGETISYKFLIIATGARALKLEEFGVEGSDAENVCYLR 145

Query: 119 DVADADALISSLEKAKK--VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPS 176
           D+ADA+ L + ++ +     VV+GGGYIGME AA+ V  K++ T++FPE H + RLFTP 
Sbjct: 146 DLADANRLATVIQSSSNGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK 205

Query: 177 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 236
           +A  YE  Y+  GVKF+KG  + + E  S+ +V AV L+DGS + AD +V+GIG +P  S
Sbjct: 206 IASLYEDYYRAKGVKFIKGTVLTSFEFDSNKKVTAVNLKDGSHLPADLVVVGIGIRPNTS 265

Query: 237 PFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHC 296
            FE   L    GGI+V+ + ++    ++AIGDVA FP+K++    R+EHVD AR+SA+H 
Sbjct: 266 LFEG-QLTIEKGGIKVNSRMQSSDSSVYAIGDVATFPVKLFGEMRRLEHVDSARKSARHA 324

Query: 297 IKALLS-AQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFD--PKIATF 353
           + A++   +T  +DYLP+FYSRVF +        WQF+GD  G+ +  G ++       +
Sbjct: 325 VSAIMDPIKTGDFDYLPFFYSRVFAFS-------WQFYGDPTGDVVHFGEYEDGKSFGAY 377

Query: 354 WIDSGKLKGVLVESGSPEEFQLLPTLARSQPFV 386
           W+  G L G  +E G+ EE++ +    + +P V
Sbjct: 378 WVKKGHLVGSFLEGGTKEEYETISKATQLKPAV 410

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q93WJ8|MDAR4_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 4 OS=Arabidopsis thaliana GN=At5g03630 PE=1 SV=1

 Score =  338 bits (866), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 174/413 (42%), Positives = 252/413 (61%), Gaps = 23/413 (5%)

Query: 4   GRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEM 63
           G L I+S+E   PYERPAL+KGY+   +K  A LP F+   G GGERQ P+WYKEKGIE+
Sbjct: 33  GELAIISREQVPPYERPALSKGYIHLENK--ATLPNFYVAAGIGGERQFPQWYKEKGIEL 90

Query: 64  IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE--KIGGYLPGVHYIRDVA 121
           I    +   D+  +TL++ +G++ KY +L+ ATG +  R  +    G     + Y+R++ 
Sbjct: 91  ILGTEIVKADLAAKTLVSGTGQVFKYQTLLAATGSSVIRLSDFGVPGADAKNIFYLRELE 150

Query: 122 DADALISSLEKAKK--VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQ 179
           DAD L  ++E  +K   VVVGGGYIG+E+ AA     LD T+++PE   + RLFT  +A 
Sbjct: 151 DADYLAYAMETKEKGKAVVVGGGYIGLELGAALKANNLDVTMVYPEPWCMPRLFTAGIAS 210

Query: 180 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE 239
            YE  Y   G+  VKG         S+G V  VKL+DG T++AD +++G+G +P +S F 
Sbjct: 211 FYEGYYANKGINIVKGTVASGFTTNSNGEVTEVKLKDGRTLEADIVIVGVGGRPIISLF- 269

Query: 240 RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKA 299
           +  +    GG++ DG F+T +P ++AIGDVA FP+K+Y+   RVEHVDHAR+SA+  +KA
Sbjct: 270 KDQVEEEKGGLKTDGFFKTSLPDVYAIGDVATFPMKLYNEMRRVEHVDHARKSAEQAVKA 329

Query: 300 LLSAQTHT----YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFD-----PKI 350
           + +A+       YDYLPYFYSR F+       + WQF+GDNVGE++  G+ D     PK 
Sbjct: 330 IKAAEEGNSIPEYDYLPYFYSRAFD-------LSWQFYGDNVGESVLFGDNDPESPKPKF 382

Query: 351 ATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEI 403
            ++WI   K+ G  +E GSPEE   +  LAR+QP V+  ++     +  A  I
Sbjct: 383 GSYWIKERKVVGAFLEGGSPEENNAIAKLARAQPSVESLEVLSKEGLSFATNI 435

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q42711|MDARS_CUCSA Monodehydroascorbate reductase, seedling isozyme OS=Cucumis sativus PE=2 SV=1

 Score =  334 bits (856), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 181/402 (45%), Positives = 255/402 (63%), Gaps = 25/402 (6%)

Query: 4   GRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEM 63
           G L I+SKEA APYERPAL+K YLFP  + PARLPGFH CVGSGGER  P+WYKEKGIE+
Sbjct: 32  GELAIISKEAVAPYERPALSKAYLFP--ESPARLPGFHVCVGSGGERLLPDWYKEKGIEL 89

Query: 64  IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE--KIGGYLPGVHYIRDVA 121
           I    +   D+  + L +  GK+  Y +LI+ATG T  +  +    G     + Y+R++ 
Sbjct: 90  ILSTEIVEADLPAKRLRSAHGKIYNYQTLIIATGSTVIKLSDFGVQGADAKNIFYLREID 149

Query: 122 DADALISSLEKAKK---VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLA 178
           DAD L+ ++ KAK+   VVVVGGGYIG+E+ AA      D ++++PE   + RLFTP +A
Sbjct: 150 DADQLVEAI-KAKENGKVVVVGGGYIGLELGAALRINNFDVSMVYPEPWCMPRLFTPEIA 208

Query: 179 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF 238
             YE  Y Q G+  +KG         ++G V  VKL+DG  ++AD +V+G+GA+P  S F
Sbjct: 209 AFYEGYYAQKGITIIKGTVAVGFTVDTNGEVKEVKLKDGRVLEADIVVVGVGARPLTSLF 268

Query: 239 ERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIK 298
            +  +    GGI+ D  F+T +P ++A+GDVA FPLK+Y+   RVEHVDH+R+SA+  +K
Sbjct: 269 -KGQIVEEKGGIKTDEFFKTSVPDVYAVGDVATFPLKLYNELRRVEHVDHSRKSAEQAVK 327

Query: 299 ALLSAQ----THTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDP-----K 349
           A+ +++       YDYLPYFYSR F+       + WQF+GDNVG+ +  G+  P     K
Sbjct: 328 AIKASEEGKAIEEYDYLPYFYSRSFD-------LSWQFYGDNVGDAVLFGDNSPDSATHK 380

Query: 350 IATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKL 391
             ++WI  GK+ G  +ESGSPEE + +  +AR QP V+ + L
Sbjct: 381 FGSYWIKDGKVVGAFLESGSPEENKAIAKVARIQPSVESSDL 422

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Cucumis sativus (taxid: 3659)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q9LFA3|MDAR3_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 3 OS=Arabidopsis thaliana GN=At3g52880 PE=1 SV=1

 Score =  322 bits (826), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 169/394 (42%), Positives = 245/394 (62%), Gaps = 23/394 (5%)

Query: 4   GRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEM 63
           G L ++SKEA APYERPAL+KGYLFP  +  ARLPGFH CVGSGGE+  PE YK+KGIE+
Sbjct: 32  GELAVISKEAVAPYERPALSKGYLFP--EGAARLPGFHCCVGSGGEKLLPESYKQKGIEL 89

Query: 64  IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE--KIGGYLPGVHYIRDVA 121
           I    +   D+  ++L++ +G + KY +LI+ATG T  R  +    G     + Y+R++ 
Sbjct: 90  ILSTEIVKADLSAKSLVSATGDVFKYQTLIIATGSTVLRLTDFGVKGADSKNILYLREID 149

Query: 122 DADALISSLEKAKKVVVVGGG--YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQ 179
           DAD L+ +++  K    V  G  YIG+E++A      LD T++FPE   + RLFT  +A 
Sbjct: 150 DADKLVEAIKAKKGGKAVVVGGGYIGLELSAVLRINNLDVTMVFPEPWCMPRLFTADIAA 209

Query: 180 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE 239
            YE  Y   GVK +KG       A  +G V  V+L+DG T++AD +++G+GAKP  S F 
Sbjct: 210 FYETYYTNKGVKIIKGTVASGFTAQPNGEVKEVQLKDGRTLEADIVIVGVGAKPLTSLF- 268

Query: 240 RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKA 299
           +  +    GGI+ D  F+T +P ++A+GDVA FPLKMY    RVEHVDH+R+SA+  +KA
Sbjct: 269 KGQVEEDKGGIKTDAFFKTSVPDVYAVGDVATFPLKMYGDVRRVEHVDHSRKSAEQAVKA 328

Query: 300 LLSAQ----THTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIG-----NFDPKI 350
           + +A+       YDYLP+FYSR F+       + WQF+GDNVG+++  G     N  P+ 
Sbjct: 329 IKAAEGGAAVEEYDYLPFFYSRSFD-------LSWQFYGDNVGDSVLFGDSNPSNPKPRF 381

Query: 351 ATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQP 384
             +W+  GK+ G  +E GS +E + L  +A+++P
Sbjct: 382 GAYWVQGGKVVGAFMEGGSGDENKALAKVAKARP 415

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q9SR59|MDAR1_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 1 OS=Arabidopsis thaliana GN=At3g09940 PE=2 SV=1

 Score =  317 bits (812), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 164/399 (41%), Positives = 244/399 (61%), Gaps = 26/399 (6%)

Query: 4   GRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEM 63
           G L I+SKE   P+ERP LTK Y+  L+  P  L   + C G+G  +Q P WYKEKGI++
Sbjct: 33  GELAIISKEPVPPFERPELTKVYI-DLEVNPT-LANIYVCAGTGEAKQYPNWYKEKGIDL 90

Query: 64  IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIG---GYLPGVHYIRDV 120
           I    +   D+  +TL+++ GK+ KY +L++ATG T  R  E IG     +  + Y+R++
Sbjct: 91  IVGTEIVKADLASKTLVSDDGKIYKYQTLLIATGSTNIRLSE-IGVQEADVKNIFYLREI 149

Query: 121 ADADALISSLE---KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSL 177
            D+D L  ++E   +  K V++GGG++G+E+++A      + T++FPE  L+ R FT  +
Sbjct: 150 EDSDELALAMELYVQRGKAVIIGGGFLGLEISSALRANNHEVTMVFPEPWLVHRFFTAEI 209

Query: 178 AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP 237
           A  YE  Y   G+K +KG         SDG V  VKLEDG T++A+ +V G+GA+P  S 
Sbjct: 210 ASFYESYYANKGIKIIKGTVATGFSTNSDGEVTEVKLEDGRTLEANIVVAGVGARPATSL 269

Query: 238 FERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCI 297
           F +  L    GGI+ DG F+T +P ++A+GDVA FP+KMY  T RVEH D+AR+SA   +
Sbjct: 270 F-KGQLEEEKGGIKTDGFFKTSVPDVYALGDVATFPMKMYGGTRRVEHADNARKSAAQAV 328

Query: 298 KALLSAQTHT----YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFD-----P 348
           KA+ + +       YDYLPYFYSR F       K+ W+F+G+NVGE++  G+ D     P
Sbjct: 329 KAIKAGEEGKTIPDYDYLPYFYSRFF-------KLSWEFYGENVGESVLFGDNDPKSPKP 381

Query: 349 KIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVD 387
           K  T+W+  GK+ GV +E G+ EE + +  +AR+QP V+
Sbjct: 382 KFGTYWVKDGKVVGVFLEGGTQEEHKAIAKVARAQPSVE 420

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|P43494|THCD_RHOER Rhodocoxin reductase OS=Rhodococcus erythropolis GN=thcD PE=1 SV=2

 Score =  153 bits (386), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 102/319 (31%), Positives = 155/319 (48%), Gaps = 20/319 (6%)

Query: 4   GRLCIVSKEAYAPYERPALTKGYLF--PLDKKPARLPGFHTCVGSGGERQTPEWYKEKGI 61
           G + +V  E   PY+RP L+K YL   P  +  A  P               +++ +  I
Sbjct: 26  GTITLVGDEPGVPYQRPPLSKAYLHSDPDRESLALRPA--------------QYFDDHRI 71

Query: 62  EMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVA 121
            +    PV  ID + Q +       ++Y  LI+ATG      P   G  LPGVHY+R   
Sbjct: 72  TLTCGKPVVRIDRDAQRVELIDATAIEYDHLILATGARNRLLPVP-GANLPGVHYLRTAG 130

Query: 122 DADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRY 181
           +A++L SS+     +VV+G G+IG+EVAAAA    LD T++   +  + R  +  ++  +
Sbjct: 131 EAESLTSSMASCSSLVVIGAGFIGLEVAAAARKKGLDVTVVEAMDRPMARALSSVMSGYF 190

Query: 182 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERV 241
              + ++GV       +K + A +DGR A V    G  I AD +V+GIG  P +      
Sbjct: 191 STAHTEHGVHMRLSTGVKTINA-ADGRAAGVTTNSGDVIHADAVVVGIGVVPNIELAALT 249

Query: 242 GLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 301
           GL     GI VD   RT    I AIGD AA+P+       R+E V +A   A+ C+ A L
Sbjct: 250 GLPVD-NGIVVDEYLRTPDENISAIGDCAAYPIPGKAGLVRLESVQNAVDQAR-CLAAQL 307

Query: 302 SAQTHTYDYLPYFYSRVFE 320
           +  +  Y  +P+F+S  +E
Sbjct: 308 TGTSTHYRSVPWFWSEQYE 326

The degradation of the thiocarbamate herbicide EPTC by cytochrome CYP116 (thcB) requires the participation of a flavoprotein, rhodocoxin reductase, and an iron-sulfur protein, rhodocoxin, to mediate the transfer of electrons from NADH to P450 for oxygen activation.

Rhodococcus erythropolis (taxid: 1833)

EC: 1

EC: .

EC: 1

EC: 8

EC: .

EC: 1

EC: .

EC: -

>sp|P16640|CAMA_PSEPU Putidaredoxin reductase OS=Pseudomonas putida GN=camA PE=1 SV=1

 Score =  149 bits (376), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 97/321 (30%), Positives = 161/321 (50%), Gaps = 17/321 (5%)

Query: 3   DGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIE 62
           +G + +V      P+  P L+K YL       A     +         +TP+ Y  + I+
Sbjct: 29  EGNIRLVGDATVIPHHLPPLSKAYL----AGKATAESLYL--------RTPDAYAAQNIQ 76

Query: 63  MIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIG--GYLPGVHYIRDV 120
           ++    VT+I+ ++Q +I + G+ L Y  L++ATG      P   G  G      Y+R +
Sbjct: 77  LLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPRPLPVASGAVGKANNFRYLRTL 136

Query: 121 ADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR 180
            DA+ +   L    ++VV+GGGYIG+EVAA A+   +  T++     +L+R+  P ++  
Sbjct: 137 EDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAF 196

Query: 181 YEQLYQQNGVKFVKGASIKNLEAGSD-GRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE 239
           YE L+++ GV    G  +   E  +D  +V AV  EDG+ + AD ++ GIG  P      
Sbjct: 197 YEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCELAS 256

Query: 240 RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKA 299
             GL     GI ++   +T  P I A+GD A F  ++YDR  R+E V +A + A+  I A
Sbjct: 257 AAGLQVD-NGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARK-IAA 314

Query: 300 LLSAQTHTYDYLPYFYSRVFE 320
           +L  +    +  P+F+S  +E
Sbjct: 315 ILCGKVPRDEAAPWFWSDQYE 335

The oxidation of camphor by cytochrome P450-CAM requires the participation of a flavoprotein, putidaredoxin reductase, and an iron-sulfur protein, putidaredoxin, to mediate the transfer of electrons from NADH to P450 for oxygen activation.

Pseudomonas putida (taxid: 303)

EC: 1

EC: .

EC: 1

EC: 8

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	414
359474156	497	PREDICTED: monodehydroascorbate reductas	1.0	0.832	0.867	0.0
297742237	490	unnamed protein product [Vitis vinifera]	1.0	0.844	0.867	0.0
147834040	889	hypothetical protein VITISV_021486 [Viti	1.0	0.465	0.840	0.0
224058437	497	predicted protein [Populus trichocarpa]	0.995	0.828	0.855	0.0
255537579	493	monodehydroascorbate reductase, putative	0.985	0.827	0.875	0.0
359807289	478	uncharacterized protein LOC100819919 [Gl	1.0	0.866	0.857	0.0
350536875	482	monodehydroascorbate reductase [Solanum	0.983	0.844	0.850	0.0
15320419	497	monodehydroascorbate reductase [Spinacia	0.985	0.820	0.840	0.0
110265126	482	chloroplast monodehydroascorbate reducta	0.983	0.844	0.847	0.0
46093473	486	monodehydroascorbate reductase [Brassica	0.985	0.839	0.840	0.0

>gi|359474156|ref|XP_002278648.2| PREDICTED: monodehydroascorbate reductase, chloroplastic [Vitis vinifera]

 Score =  765 bits (1975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/414 (86%), Positives = 393/414 (94%)

Query: 1   MADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKG 60
           MADG+LCIVSKEA+APYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP+WYKEKG
Sbjct: 84  MADGKLCIVSKEAFAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPDWYKEKG 143

Query: 61  IEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDV 120
           IEM+Y+DPVT IDIEKQTL+TNSGKLLKYGSLI+ATGCTASR P+KIGG LPGVHYIRDV
Sbjct: 144 IEMLYEDPVTGIDIEKQTLMTNSGKLLKYGSLIIATGCTASRLPDKIGGNLPGVHYIRDV 203

Query: 121 ADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR 180
           ADAD+LISSLEKA+KVV+VGGGYIGMEVAAAA GWKLDTTIIFPE+HLLQRLFTP+LA+R
Sbjct: 204 ADADSLISSLEKARKVVIVGGGYIGMEVAAAAAGWKLDTTIIFPEDHLLQRLFTPTLARR 263

Query: 181 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER 240
           YE+ YQ+NGVKFVKGASIKN+EAGSDG V AVKLE+GSTI+ADTI+IGIGAKP VSPFER
Sbjct: 264 YEEFYQENGVKFVKGASIKNIEAGSDGHVTAVKLENGSTIEADTIIIGIGAKPAVSPFER 323

Query: 241 VGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 300
           VG+N++VGGIQVDGQFRT +PGIFAIGDVAAFPLKMY+R ARVEHVDHAR+SAQHCI AL
Sbjct: 324 VGINTTVGGIQVDGQFRTSVPGIFAIGDVAAFPLKMYNRIARVEHVDHARRSAQHCINAL 383

Query: 301 LSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKL 360
           L+A+TH YDYLPYFYSRVFEYEGSPRK+WWQFFGDNVGET+EIGNFDPKIATFWIDSGKL
Sbjct: 384 LTAKTHLYDYLPYFYSRVFEYEGSPRKIWWQFFGDNVGETVEIGNFDPKIATFWIDSGKL 443

Query: 361 KGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARAALPVEAAV 414
           KGVL+ESGSPEEFQLLP LARSQP VD  KLQ+ASSVEEALE+A A +   AAV
Sbjct: 444 KGVLLESGSPEEFQLLPKLARSQPHVDMTKLQKASSVEEALELAHAYVQAGAAV 497

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742237|emb|CBI34386.3| unnamed protein product [Vitis vinifera]

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/414 (86%), Positives = 393/414 (94%)

Query: 1   MADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKG 60
           MADG+LCIVSKEA+APYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP+WYKEKG
Sbjct: 77  MADGKLCIVSKEAFAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPDWYKEKG 136

Query: 61  IEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDV 120
           IEM+Y+DPVT IDIEKQTL+TNSGKLLKYGSLI+ATGCTASR P+KIGG LPGVHYIRDV
Sbjct: 137 IEMLYEDPVTGIDIEKQTLMTNSGKLLKYGSLIIATGCTASRLPDKIGGNLPGVHYIRDV 196

Query: 121 ADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR 180
           ADAD+LISSLEKA+KVV+VGGGYIGMEVAAAA GWKLDTTIIFPE+HLLQRLFTP+LA+R
Sbjct: 197 ADADSLISSLEKARKVVIVGGGYIGMEVAAAAAGWKLDTTIIFPEDHLLQRLFTPTLARR 256

Query: 181 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER 240
           YE+ YQ+NGVKFVKGASIKN+EAGSDG V AVKLE+GSTI+ADTI+IGIGAKP VSPFER
Sbjct: 257 YEEFYQENGVKFVKGASIKNIEAGSDGHVTAVKLENGSTIEADTIIIGIGAKPAVSPFER 316

Query: 241 VGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 300
           VG+N++VGGIQVDGQFRT +PGIFAIGDVAAFPLKMY+R ARVEHVDHAR+SAQHCI AL
Sbjct: 317 VGINTTVGGIQVDGQFRTSVPGIFAIGDVAAFPLKMYNRIARVEHVDHARRSAQHCINAL 376

Query: 301 LSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKL 360
           L+A+TH YDYLPYFYSRVFEYEGSPRK+WWQFFGDNVGET+EIGNFDPKIATFWIDSGKL
Sbjct: 377 LTAKTHLYDYLPYFYSRVFEYEGSPRKIWWQFFGDNVGETVEIGNFDPKIATFWIDSGKL 436

Query: 361 KGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARAALPVEAAV 414
           KGVL+ESGSPEEFQLLP LARSQP VD  KLQ+ASSVEEALE+A A +   AAV
Sbjct: 437 KGVLLESGSPEEFQLLPKLARSQPHVDMTKLQKASSVEEALELAHAYVQAGAAV 490

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147834040|emb|CAN64338.1| hypothetical protein VITISV_021486 [Vitis vinifera]

 Score =  758 bits (1956), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/427 (84%), Positives = 393/427 (92%), Gaps = 13/427 (3%)

Query: 1   MADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKG 60
           MADG+LCIVSKEA+APYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP+WYKEKG
Sbjct: 463 MADGKLCIVSKEAFAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPDWYKEKG 522

Query: 61  IEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASR-------------FPEKI 107
           IEM+Y+DPVT IDIEKQTL+TNSGKLLKYGSLI+ATGCTASR              P+KI
Sbjct: 523 IEMLYEDPVTGIDIEKQTLMTNSGKLLKYGSLIIATGCTASRRSEDEFFSSPDFRLPDKI 582

Query: 108 GGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH 167
           GG LPGVHYIRDVADAD+LISSLEKA+KVV+VGGGYIGMEVAAAA GWKLDTTIIFPE+H
Sbjct: 583 GGNLPGVHYIRDVADADSLISSLEKARKVVIVGGGYIGMEVAAAAAGWKLDTTIIFPEDH 642

Query: 168 LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 227
           LLQRLFTP+LA+RYE+ YQ+NGVKFVKGASIKN+EAGSDG V AVKLE+GSTI+ADTI+I
Sbjct: 643 LLQRLFTPTLARRYEEFYQENGVKFVKGASIKNIEAGSDGHVTAVKLENGSTIEADTIII 702

Query: 228 GIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVD 287
           GIGAKP VSPFERVG+N++VGGIQVDGQFRT +PGIFAIGDVAAFPLKMY+R ARVEHVD
Sbjct: 703 GIGAKPAVSPFERVGINTTVGGIQVDGQFRTSVPGIFAIGDVAAFPLKMYNRIARVEHVD 762

Query: 288 HARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFD 347
           HAR+SAQHCI ALL+A+TH YDYLPYFYSRVFEYEGSPRK+WWQFFGDNVGET+EIGNFD
Sbjct: 763 HARRSAQHCINALLTAKTHLYDYLPYFYSRVFEYEGSPRKIWWQFFGDNVGETVEIGNFD 822

Query: 348 PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARAA 407
           PKIATFWIDSGKLKGVL+ESGSPEEFQLLP LARSQP VD  KLQ+ASSVEEALE+A A 
Sbjct: 823 PKIATFWIDSGKLKGVLLESGSPEEFQLLPKLARSQPQVDMTKLQKASSVEEALELAHAT 882

Query: 408 LPVEAAV 414
           +   AAV
Sbjct: 883 VQAGAAV 889

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058437|ref|XP_002299509.1| predicted protein [Populus trichocarpa] gi|118488230|gb|ABK95934.1| unknown [Populus trichocarpa] gi|222846767|gb|EEE84314.1| predicted protein [Populus trichocarpa]

 Score =  755 bits (1949), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/414 (85%), Positives = 391/414 (94%), Gaps = 2/414 (0%)

Query: 1   MADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKG 60
           MADG+LCIV++EAYAPYERPALTK YLFPLDKKPARLPGFHTCVGSGGERQTP+WYKEKG
Sbjct: 86  MADGKLCIVTREAYAPYERPALTKAYLFPLDKKPARLPGFHTCVGSGGERQTPDWYKEKG 145

Query: 61  IEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDV 120
           IEM+Y+DPVT IDIEKQT  T SGKLLKYG+LIVATGC+ASRFPEKIGG LPGVHYIRDV
Sbjct: 146 IEMLYEDPVTGIDIEKQTATTISGKLLKYGTLIVATGCSASRFPEKIGGNLPGVHYIRDV 205

Query: 121 ADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR 180
           ADAD+LISSLEKA K+V+VGGGYIGMEVAAAAV WKLDTTIIFPENHL+QRLFTPSLAQ+
Sbjct: 206 ADADSLISSLEKAHKLVIVGGGYIGMEVAAAAVAWKLDTTIIFPENHLMQRLFTPSLAQK 265

Query: 181 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER 240
           YE+LYQ+NGVKF+KGASIKNLEA SDG VAA+KLE+GSTI+AD ++IGIGAKP V PFER
Sbjct: 266 YEELYQENGVKFIKGASIKNLEASSDGHVAAIKLENGSTIEADMVIIGIGAKPAVGPFER 325

Query: 241 VGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 300
           +GLN+SVGGIQVDGQFRT +PGIFAIGDVAAFPLKMY+R ARVEHVDHAR+SAQHC+K+L
Sbjct: 326 LGLNNSVGGIQVDGQFRTGIPGIFAIGDVAAFPLKMYNRMARVEHVDHARRSAQHCVKSL 385

Query: 301 LSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKL 360
           L+A T +YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETI++GNFDPKIATFWIDSGKL
Sbjct: 386 LTAHTSSYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIQVGNFDPKIATFWIDSGKL 445

Query: 361 KGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARAALPVEAAV 414
           KGVL+ESGSPEEFQLLP LA+SQP VDK+KLQ ASSVEEALEIAR +L  +AAV
Sbjct: 446 KGVLLESGSPEEFQLLPELAKSQPIVDKSKLQSASSVEEALEIARTSL--QAAV 497

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537579|ref|XP_002509856.1| monodehydroascorbate reductase, putative [Ricinus communis] gi|223549755|gb|EEF51243.1| monodehydroascorbate reductase, putative [Ricinus communis]

 Score =  739 bits (1909), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/408 (87%), Positives = 389/408 (95%)

Query: 1   MADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKG 60
           MADGRLCIV+KE +APYERPALTK YLFPLDKKPARLPGFHTCVGSGGERQTP+WY+EKG
Sbjct: 82  MADGRLCIVTKEPHAPYERPALTKAYLFPLDKKPARLPGFHTCVGSGGERQTPDWYQEKG 141

Query: 61  IEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDV 120
           IEM+Y+DPVTSIDIEKQTL TNSGKLLKYG+LI+ATG TASRFPEKIGG LPGVHYIRDV
Sbjct: 142 IEMLYEDPVTSIDIEKQTLGTNSGKLLKYGTLIIATGSTASRFPEKIGGSLPGVHYIRDV 201

Query: 121 ADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR 180
           ADAD+LISSL+KA+KVVVVGGGYIGMEVAAAAVGW LDTTIIFPE HLLQRLFTPSLAQR
Sbjct: 202 ADADSLISSLDKARKVVVVGGGYIGMEVAAAAVGWNLDTTIIFPEKHLLQRLFTPSLAQR 261

Query: 181 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER 240
           YE+LY++NGVKF+KGASIKNLEAGSDG VA VKLEDGS I+ADT+VIGIGAKP VSPFE+
Sbjct: 262 YEELYKENGVKFLKGASIKNLEAGSDGHVATVKLEDGSIIEADTVVIGIGAKPAVSPFEQ 321

Query: 241 VGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 300
           VGLN++VGGIQVDGQFRT  PGIFAIGDVAAFPLKMY+RTARVEHVDHAR+SA+HC+KAL
Sbjct: 322 VGLNATVGGIQVDGQFRTNKPGIFAIGDVAAFPLKMYNRTARVEHVDHARRSARHCVKAL 381

Query: 301 LSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKL 360
           LSAQT TYDYLPYFYSRVFEYEGSPRK+WWQFFGDNVGE +EIGNFDPKIATFWIDSGKL
Sbjct: 382 LSAQTSTYDYLPYFYSRVFEYEGSPRKIWWQFFGDNVGEAVEIGNFDPKIATFWIDSGKL 441

Query: 361 KGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARAAL 408
           KG+L+ESGS EEFQLLP LARSQP VDK+KL +ASSVEEALEIA+A+L
Sbjct: 442 KGILLESGSAEEFQLLPKLARSQPSVDKSKLLKASSVEEALEIAQASL 489

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807289|ref|NP_001241372.1| uncharacterized protein LOC100819919 [Glycine max] gi|255635874|gb|ACU18284.1| unknown [Glycine max]

 Score =  737 bits (1903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/414 (85%), Positives = 387/414 (93%)

Query: 1   MADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKG 60
           MADGRLCIV+KE YAPYERPALTK YLFP DKKPARLPGFHTCVGSGGERQTP WYKE G
Sbjct: 65  MADGRLCIVTKEPYAPYERPALTKAYLFPPDKKPARLPGFHTCVGSGGERQTPGWYKENG 124

Query: 61  IEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDV 120
           IEM+Y+DPV  IDIEK TL T+SGKLLKYGSL++ATGCTASRFPEKIGG LPGVHYIRDV
Sbjct: 125 IEMLYEDPVKDIDIEKHTLTTSSGKLLKYGSLVIATGCTASRFPEKIGGNLPGVHYIRDV 184

Query: 121 ADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR 180
            DADALI SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE+HLLQRLFTPSLA+R
Sbjct: 185 GDADALILSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEDHLLQRLFTPSLARR 244

Query: 181 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER 240
           YE+LYQ+NGVK +KGASIKNLEAGS+G VAAVKL DGS ++ADT++IGIGAKP V+PFER
Sbjct: 245 YEELYQKNGVKILKGASIKNLEAGSNGHVAAVKLGDGSLVEADTVIIGIGAKPAVTPFER 304

Query: 241 VGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 300
           VGLN+ VGGIQVDGQFRT  PGIFA+GDVAAFPLK+Y+R +RVEHVDHAR+SAQHC+KAL
Sbjct: 305 VGLNTEVGGIQVDGQFRTSTPGIFAVGDVAAFPLKIYNRISRVEHVDHARRSAQHCVKAL 364

Query: 301 LSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKL 360
           LSAQTHTYDYLPYFYSR+FEYEGSPRKVWWQFFGDNVGET+EIGNFDPKI+TFWI+SGKL
Sbjct: 365 LSAQTHTYDYLPYFYSRIFEYEGSPRKVWWQFFGDNVGETVEIGNFDPKISTFWIESGKL 424

Query: 361 KGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARAALPVEAAV 414
           KGVL+ESGSPEEFQLLP LARSQP +DKAKLQ A+SVEEALEIAR +L  EAAV
Sbjct: 425 KGVLLESGSPEEFQLLPKLARSQPLIDKAKLQNATSVEEALEIARESLQGEAAV 478

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350536875|ref|NP_001234013.1| monodehydroascorbate reductase [Solanum lycopersicum] gi|195542238|gb|AAZ66138.2| monodehydroascorbate reductase [Solanum lycopersicum] gi|299507810|gb|ADJ21816.1| monodehydroascorbate reductase [Solanum lycopersicum var. cerasiforme]

 Score =  737 bits (1902), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/407 (85%), Positives = 381/407 (93%)

Query: 2   ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGI 61
           A+G+LCIV+KE YAPYERPALTK YLFPLDKKPARLPGFHTCVG+GGERQTP+WYKE+GI
Sbjct: 76  ANGKLCIVTKEPYAPYERPALTKAYLFPLDKKPARLPGFHTCVGAGGERQTPDWYKEQGI 135

Query: 62  EMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVA 121
           EM+Y+DPVT IDIEKQTL TNSGKLLKYG+LI+ATGCTASRFPEKIGG LPGVHYIRDVA
Sbjct: 136 EMLYEDPVTGIDIEKQTLTTNSGKLLKYGTLIIATGCTASRFPEKIGGNLPGVHYIRDVA 195

Query: 122 DADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRY 181
           DAD+LISSL KAKK+VVVGGGYIGMEVAAAAV WKLDTTIIFPE HLL RLFTPSLAQ+Y
Sbjct: 196 DADSLISSLGKAKKLVVVGGGYIGMEVAAAAVAWKLDTTIIFPEEHLLSRLFTPSLAQKY 255

Query: 182 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERV 241
           EQLYQ +GVKFVKGA IK+LE+G D RV AVKLEDGS+I+ DT+VIGIGAKP VSPF+ V
Sbjct: 256 EQLYQDSGVKFVKGAKIKHLESGPDSRVTAVKLEDGSSIETDTVVIGIGAKPAVSPFDMV 315

Query: 242 GLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 301
           GLN++VGGI+VDGQFRT +PGIFAIGDVAAFPLK+Y+R ARVEHVDHAR+SAQHCIK+LL
Sbjct: 316 GLNNTVGGIEVDGQFRTNIPGIFAIGDVAAFPLKIYNRIARVEHVDHARKSAQHCIKSLL 375

Query: 302 SAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLK 361
           +A THTYDYLPYFYSRVFEYEGS RKVWWQFFGDNVGE +E+GNFDPK+ATFWIDSGKLK
Sbjct: 376 TAHTHTYDYLPYFYSRVFEYEGSSRKVWWQFFGDNVGEAVEVGNFDPKVATFWIDSGKLK 435

Query: 362 GVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARAAL 408
           GVL+ESGSPEEFQLLP LARSQP VD AKLQ ASSVEEALEIA+A+L
Sbjct: 436 GVLLESGSPEEFQLLPKLARSQPSVDIAKLQNASSVEEALEIAQASL 482

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15320419|dbj|BAB63925.1| monodehydroascorbate reductase [Spinacia oleracea]

 Score =  736 bits (1899), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/408 (84%), Positives = 381/408 (93%)

Query: 1   MADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKG 60
           +ADG+LCIV+KEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVG GGERQTPEWY+EKG
Sbjct: 90  LADGKLCIVTKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGGGGERQTPEWYQEKG 149

Query: 61  IEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDV 120
           IEMIY+D VT +DIEK TL T SGK LKYGSLIVATGCTA+RFPEKIGG LPGVHY+RDV
Sbjct: 150 IEMIYEDAVTGVDIEKHTLQTQSGKSLKYGSLIVATGCTATRFPEKIGGNLPGVHYVRDV 209

Query: 121 ADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR 180
           ADAD+LI SL+KAKKVV+VGGGYIGMEVAAAAVGW LDTT+IFPE+HLLQRLFTPSLA++
Sbjct: 210 ADADSLIESLKKAKKVVIVGGGYIGMEVAAAAVGWNLDTTVIFPEDHLLQRLFTPSLARK 269

Query: 181 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER 240
           YE+LY+QNGVKFVKGA IKNLEAGSDG VAAV LE+GSTI+ADTI+IGIGAKP V PFE 
Sbjct: 270 YEELYEQNGVKFVKGAMIKNLEAGSDGSVAAVNLENGSTIEADTIIIGIGAKPAVGPFEN 329

Query: 241 VGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 300
           VGL+++VGGI+VDG FR+++PGIFAIGDVAAFPLKMYDR ARVEHVDHAR+SAQHC+ AL
Sbjct: 330 VGLDTTVGGIEVDGLFRSKVPGIFAIGDVAAFPLKMYDRVARVEHVDHARKSAQHCVSAL 389

Query: 301 LSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKL 360
           LSA+THTYDYLPYFYSRVFEYEGS RKVWWQFFGDNVGE +E+GNFDPKIATFWIDSG+L
Sbjct: 390 LSARTHTYDYLPYFYSRVFEYEGSQRKVWWQFFGDNVGEAVEVGNFDPKIATFWIDSGRL 449

Query: 361 KGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARAAL 408
           KGVLVESGSPEEFQLLP +A++QP VDKAKLQ ASSVEEALEI   ++
Sbjct: 450 KGVLVESGSPEEFQLLPKIAKAQPLVDKAKLQSASSVEEALEIIHQSM 497

Source: Spinacia oleracea

Species: Spinacia oleracea

Genus: Spinacia

Family: Amaranthaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110265126|gb|ABG57052.1| chloroplast monodehydroascorbate reductase [Solanum lycopersicum]

 Score =  735 bits (1897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/407 (84%), Positives = 381/407 (93%)

Query: 2   ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGI 61
           A+G+LCIV+KE YAPYERPALTK YLFPLDKKPARLPGFHTCVG+GGERQTP+WYKE+GI
Sbjct: 76  ANGKLCIVTKEPYAPYERPALTKAYLFPLDKKPARLPGFHTCVGAGGERQTPDWYKEQGI 135

Query: 62  EMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVA 121
           EM+Y+DPVT IDIEKQTL TNSGKLLKYG+LI+ATGCTASRFPEKIGG LPGVHYIRDVA
Sbjct: 136 EMLYEDPVTGIDIEKQTLTTNSGKLLKYGTLIIATGCTASRFPEKIGGNLPGVHYIRDVA 195

Query: 122 DADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRY 181
           DAD+LISSL KAKK+VVVGGGYIGMEVAAAAV WKLDTTIIFPE HLL RLFTPSLAQ+Y
Sbjct: 196 DADSLISSLGKAKKLVVVGGGYIGMEVAAAAVAWKLDTTIIFPEEHLLSRLFTPSLAQKY 255

Query: 182 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERV 241
           EQLYQ +GVKFVKGA IK+LE+G D RV AVKLEDGS+I+ DT+VIGIGAKP VSPF+ V
Sbjct: 256 EQLYQDSGVKFVKGAKIKHLESGPDSRVTAVKLEDGSSIETDTVVIGIGAKPAVSPFDMV 315

Query: 242 GLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 301
           GLN++VGGI+VDGQFRT +PGIFAIGDVAAFPLK+Y+R ARVEHVDHAR+SAQHCIK+LL
Sbjct: 316 GLNNTVGGIEVDGQFRTNIPGIFAIGDVAAFPLKIYNRIARVEHVDHARKSAQHCIKSLL 375

Query: 302 SAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLK 361
           +A THT+DYLPYFYSRVFEYEGS RKVWWQFFGDNVGE +E+GNFDPK+ATFWIDSGKLK
Sbjct: 376 TAHTHTHDYLPYFYSRVFEYEGSSRKVWWQFFGDNVGEAVEVGNFDPKVATFWIDSGKLK 435

Query: 362 GVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARAAL 408
           GVL+ESGSPEEFQLLP LARSQP VD AKLQ ASSVEEALEIA+A+L
Sbjct: 436 GVLLESGSPEEFQLLPKLARSQPSVDIAKLQNASSVEEALEIAQASL 482

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|46093473|dbj|BAD14933.1| monodehydroascorbate reductase [Brassica oleracea]

 Score =  730 bits (1884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/408 (84%), Positives = 375/408 (91%)

Query: 1   MADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKG 60
           MADGRLCIV+KEAYAPYERPALTK YLFP +KKPARLPGFHTCVG GGERQTP+WYKEKG
Sbjct: 77  MADGRLCIVTKEAYAPYERPALTKAYLFPPEKKPARLPGFHTCVGGGGERQTPDWYKEKG 136

Query: 61  IEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDV 120
           IEMIY+DPVT  D EKQTL TN+GK LKYGSLI+ATGCTASRFP+KIGG LPGVHYIR+V
Sbjct: 137 IEMIYEDPVTGADFEKQTLTTNTGKQLKYGSLIIATGCTASRFPDKIGGNLPGVHYIREV 196

Query: 121 ADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR 180
           ADAD+LISSL K+KKVV+VGGGYIGMEVAAAAV W LDTTI+FPE+ LLQRLFTPSLAQR
Sbjct: 197 ADADSLISSLGKSKKVVIVGGGYIGMEVAAAAVAWNLDTTIVFPEDQLLQRLFTPSLAQR 256

Query: 181 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER 240
           YE+LY+QNGVKFVKGASI NLEAGSDGRV AVKL DGSTI+ADT+VIGIGAKP + PFE 
Sbjct: 257 YEELYRQNGVKFVKGASINNLEAGSDGRVTAVKLADGSTIEADTVVIGIGAKPAIGPFET 316

Query: 241 VGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 300
           + +N S+GGIQVDG FRT  PGIFAIGDVAAFPLK+YDR  RVEHVDHAR+SAQHC+K+L
Sbjct: 317 LSMNKSIGGIQVDGLFRTSTPGIFAIGDVAAFPLKIYDRMTRVEHVDHARRSAQHCVKSL 376

Query: 301 LSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKL 360
           L+A T TYDYLPYFYSRVFEYEGS RKVWWQF+GDNVGET+E+GNFDPKIATFWIDSG+L
Sbjct: 377 LTAHTDTYDYLPYFYSRVFEYEGSSRKVWWQFYGDNVGETVEVGNFDPKIATFWIDSGRL 436

Query: 361 KGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARAAL 408
           KGVLVESGSPEEFQLLP LARSQP VDKAKL  ASSVEEA+EIA+AAL
Sbjct: 437 KGVLVESGSPEEFQLLPKLARSQPIVDKAKLASASSVEEAIEIAQAAL 484

Source: Brassica oleracea

Species: Brassica oleracea

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	414
TAIR|locus:2195503	493	MDAR6 "monodehydroascorbate re	0.985	0.827	0.821	4.5e-185
TAIR|locus:2144588	435	ATMDAR2 [Arabidopsis thaliana	0.942	0.896	0.414	3.9e-83
TAIR|locus:2086430	488	MDAR4 "monodehydroascorbate re	0.908	0.770	0.419	5e-83
TAIR|locus:2085176	466	MDAR1 "monodehydroascorbate re	0.896	0.796	0.426	6.4e-83
TAIR|locus:2100143	441	MDHAR "monodehydroascorbate re	0.932	0.875	0.399	1.3e-77
TIGR_CMR|SPO_3737	403	SPO_3737 "pyridine nucleotide-	0.871	0.895	0.293	1.7e-34
UNIPROTKB|P95146	411	Rv1869c "Probable reductase" [	0.862	0.868	0.290	9.5e-34
UNIPROTKB|D5IGG6	414	fdr "Ferredoxin--NAD(P)(+) red	0.727	0.727	0.304	6.2e-30
WB|WBGene00017640	549	F20D6.11 [Caenorhabditis elega	0.751	0.566	0.293	8.6e-30
UNIPROTKB|Q19655	549	F20D6.11 "Protein F20D6.11" [C	0.751	0.566	0.293	8.6e-30

TAIR|locus:2195503 MDAR6 "monodehydroascorbate reductase 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1795 (636.9 bits), Expect = 4.5e-185, P = 4.5e-185
 Identities = 335/408 (82%), Positives = 370/408 (90%)

Query:     1 MADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKG 60
             MADGRLCIV+KEAYAPYERPALTK YLFP +KKPARLPGFHTCVG GGERQTP+WYKEKG
Sbjct:    84 MADGRLCIVTKEAYAPYERPALTKAYLFPPEKKPARLPGFHTCVGGGGERQTPDWYKEKG 143

Query:    61 IEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDV 120
             IE+IY+DPV   D EKQTL T++GK LKYGSLI+ATGCTASRFP+KIGG+LPGVHYIR+V
Sbjct:   144 IEVIYEDPVAGADFEKQTLTTDAGKQLKYGSLIIATGCTASRFPDKIGGHLPGVHYIREV 203

Query:   121 ADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR 180
             ADAD+LI+SL KAKK       YIGMEVAAAAV W LDTTI+FPE+ LLQRLFTPSLAQ+
Sbjct:   204 ADADSLIASLGKAKKIVIVGGGYIGMEVAAAAVAWNLDTTIVFPEDQLLQRLFTPSLAQK 263

Query:   181 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER 240
             YE+LY+QNGVKFVKGASI NLEAGSDGRV+AVKL DGSTI+ADT+VIGIGAKP + PFE 
Sbjct:   264 YEELYRQNGVKFVKGASINNLEAGSDGRVSAVKLADGSTIEADTVVIGIGAKPAIGPFET 323

Query:   241 VGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 300
             + +N S+GGIQVDG FRT  PGIFAIGDVAAFPLK+YDR  RVEHVDHAR+SAQHC+K+L
Sbjct:   324 LAMNKSIGGIQVDGLFRTSTPGIFAIGDVAAFPLKIYDRMTRVEHVDHARRSAQHCVKSL 383

Query:   301 LSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKL 360
             L+A T TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGET+E+GNFDPKIATFWI+SG+L
Sbjct:   384 LTAHTDTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETVEVGNFDPKIATFWIESGRL 443

Query:   361 KGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARAAL 408
             KGVLVESGSPEEFQLLP LARSQP VDKAKL  ASSVEEALEIA+AAL
Sbjct:   444 KGVLVESGSPEEFQLLPKLARSQPLVDKAKLASASSVEEALEIAQAAL 491

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0010319 "stromule" evidence=IDA

GO:0005524 "ATP binding" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

TAIR|locus:2144588 ATMDAR2 [Arabidopsis thaliana (taxid:3702)]

 Score = 833 (298.3 bits), Expect = 3.9e-83, P = 3.9e-83
 Identities = 171/413 (41%), Positives = 247/413 (59%)

Query:     4 GRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEM 63
             G L I+S+E   PYERPAL+KGY+  L+ K A LP F+   G GGERQ P+WYKEKGIE+
Sbjct:    33 GELAIISREQVPPYERPALSKGYIH-LENK-ATLPNFYVAAGIGGERQFPQWYKEKGIEL 90

Query:    64 IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE--KIGGYLPGVHYIRDVA 121
             I    +   D+  +TL++ +G++ KY +L+ ATG +  R  +    G     + Y+R++ 
Sbjct:    91 ILGTEIVKADLAAKTLVSGTGQVFKYQTLLAATGSSVIRLSDFGVPGADAKNIFYLRELE 150

Query:   122 DADALISSLE-KAK-KXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQ 179
             DAD L  ++E K K K       YIG+E+ AA     LD T+++PE   + RLFT  +A 
Sbjct:   151 DADYLAYAMETKEKGKAVVVGGGYIGLELGAALKANNLDVTMVYPEPWCMPRLFTAGIAS 210

Query:   180 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE 239
              YE  Y   G+  VKG         S+G V  VKL+DG T++AD +++G+G +P +S F+
Sbjct:   211 FYEGYYANKGINIVKGTVASGFTTNSNGEVTEVKLKDGRTLEADIVIVGVGGRPIISLFK 270

Query:   240 RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKA 299
                +    GG++ DG F+T +P ++AIGDVA FP+K+Y+   RVEHVDHAR+SA+  +KA
Sbjct:   271 DQ-VEEEKGGLKTDGFFKTSLPDVYAIGDVATFPMKLYNEMRRVEHVDHARKSAEQAVKA 329

Query:   300 LLSAQTHT----YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDP-----KI 350
             + +A+       YDYLPYFYSR F+         WQF+GDNVGE++  G+ DP     K 
Sbjct:   330 IKAAEEGNSIPEYDYLPYFYSRAFDLS-------WQFYGDNVGESVLFGDNDPESPKPKF 382

Query:   351 ATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEI 403
              ++WI   K+ G  +E GSPEE   +  LAR+QP V+  ++     +  A  I
Sbjct:   383 GSYWIKERKVVGAFLEGGSPEENNAIAKLARAQPSVESLEVLSKEGLSFATNI 435

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0016656 "monodehydroascorbate reductase (NADH) activity" evidence=ISS

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0010043 "response to zinc ion" evidence=IEP

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

TAIR|locus:2086430 MDAR4 "monodehydroascorbate reductase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 832 (297.9 bits), Expect = 5.0e-83, P = 5.0e-83
 Identities = 165/393 (41%), Positives = 248/393 (63%)

Query:     1 MADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKG 60
             ++DG LCI+S+E  APYERPAL+KG+L P  + PARLP FHTCVG+  E+ TP+WYK+ G
Sbjct:    28 VSDGELCIISEEPVAPYERPALSKGFLLP--EAPARLPSFHTCVGANDEKLTPKWYKDHG 85

Query:    61 IEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE--KIGGYLPGVHYIR 118
             IE++    V S+D+ ++TL++++G+ + Y  LI+ATG  A +  E    G     V Y+R
Sbjct:    86 IELVLGTRVKSVDVRRKTLLSSTGETISYKFLIIATGARALKLEEFGVEGSDAENVCYLR 145

Query:   119 DVADADALISSLEKAKKXXXXXXX--YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPS 176
             D+ADA+ L + ++ +           YIGME AA+ V  K++ T++FPE H + RLFTP 
Sbjct:   146 DLADANRLATVIQSSSNGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK 205

Query:   177 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 236
             +A  YE  Y+  GVKF+KG  + + E  S+ +V AV L+DGS + AD +V+GIG +P  S
Sbjct:   206 IASLYEDYYRAKGVKFIKGTVLTSFEFDSNKKVTAVNLKDGSHLPADLVVVGIGIRPNTS 265

Query:   237 PFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHC 296
              FE   L    GGI+V+ + ++    ++AIGDVA FP+K++    R+EHVD AR+SA+H 
Sbjct:   266 LFEGQ-LTIEKGGIKVNSRMQSSDSSVYAIGDVATFPVKLFGEMRRLEHVDSARKSARHA 324

Query:   297 IKALLSA-QTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNF-DPK-IATF 353
             + A++   +T  +DYLP+FYSRVF +        WQF+GD  G+ +  G + D K    +
Sbjct:   325 VSAIMDPIKTGDFDYLPFFYSRVFAFS-------WQFYGDPTGDVVHFGEYEDGKSFGAY 377

Query:   354 WIDSGKLKGVLVESGSPEEFQLLPTLARSQPFV 386
             W+  G L G  +E G+ EE++ +    + +P V
Sbjct:   378 WVKKGHLVGSFLEGGTKEEYETISKATQLKPAV 410

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005778 "peroxisomal membrane" evidence=IDA

GO:0016656 "monodehydroascorbate reductase (NADH) activity" evidence=IMP;IDA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA;IMP;TAS

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2085176 MDAR1 "monodehydroascorbate reductase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 831 (297.6 bits), Expect = 6.4e-83, P = 6.4e-83
 Identities = 168/394 (42%), Positives = 243/394 (61%)

Query:     4 GRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEM 63
             G L ++SKEA APYERPAL+KGYLFP  +  ARLPGFH CVGSGGE+  PE YK+KGIE+
Sbjct:    64 GELAVISKEAVAPYERPALSKGYLFP--EGAARLPGFHCCVGSGGEKLLPESYKQKGIEL 121

Query:    64 IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE--KIGGYLPGVHYIRDVA 121
             I    +   D+  ++L++ +G + KY +LI+ATG T  R  +    G     + Y+R++ 
Sbjct:   122 ILSTEIVKADLSAKSLVSATGDVFKYQTLIIATGSTVLRLTDFGVKGADSKNILYLREID 181

Query:   122 DADALISSLEKAK--KXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQ 179
             DAD L+ +++  K  K       YIG+E++A      LD T++FPE   + RLFT  +A 
Sbjct:   182 DADKLVEAIKAKKGGKAVVVGGGYIGLELSAVLRINNLDVTMVFPEPWCMPRLFTADIAA 241

Query:   180 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE 239
              YE  Y   GVK +KG       A  +G V  V+L+DG T++AD +++G+GAKP  S F+
Sbjct:   242 FYETYYTNKGVKIIKGTVASGFTAQPNGEVKEVQLKDGRTLEADIVIVGVGAKPLTSLFK 301

Query:   240 RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKA 299
                +    GGI+ D  F+T +P ++A+GDVA FPLKMY    RVEHVDH+R+SA+  +KA
Sbjct:   302 GQ-VEEDKGGIKTDAFFKTSVPDVYAVGDVATFPLKMYGDVRRVEHVDHSRKSAEQAVKA 360

Query:   300 LLSAQ----THTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIG-----NFDPKI 350
             + +A+       YDYLP+FYSR F+         WQF+GDNVG+++  G     N  P+ 
Sbjct:   361 IKAAEGGAAVEEYDYLPFFYSRSFDLS-------WQFYGDNVGDSVLFGDSNPSNPKPRF 413

Query:   351 ATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQP 384
               +W+  GK+ G  +E GS +E + L  +A+++P
Sbjct:   414 GAYWVQGGKVVGAFMEGGSGDENKALAKVAKARP 447

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005782 "peroxisomal matrix" evidence=IDA

GO:0016656 "monodehydroascorbate reductase (NADH) activity" evidence=IDA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA;TAS

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

TAIR|locus:2100143 MDHAR "monodehydroascorbate reductase" [Arabidopsis thaliana (taxid:3702)]

 Score = 781 (280.0 bits), Expect = 1.3e-77, P = 1.3e-77
 Identities = 166/416 (39%), Positives = 244/416 (58%)

Query:     4 GRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEM 63
             G L I+SKE   P+ERP LTK Y+  L+  P  L   + C G+G  +Q P WYKEKGI++
Sbjct:    33 GELAIISKEPVPPFERPELTKVYI-DLEVNPT-LANIYVCAGTGEAKQYPNWYKEKGIDL 90

Query:    64 IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIG---GYLPGVHYIRDV 120
             I    +   D+  +TL+++ GK+ KY +L++ATG T  R  E IG     +  + Y+R++
Sbjct:    91 IVGTEIVKADLASKTLVSDDGKIYKYQTLLIATGSTNIRLSE-IGVQEADVKNIFYLREI 149

Query:   121 ADADALISSLE---KAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSL 177
              D+D L  ++E   +  K       ++G+E+++A      + T++FPE  L+ R FT  +
Sbjct:   150 EDSDELALAMELYVQRGKAVIIGGGFLGLEISSALRANNHEVTMVFPEPWLVHRFFTAEI 209

Query:   178 AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP 237
             A  YE  Y   G+K +KG         SDG V  VKLEDG T++A+ +V G+GA+P  S 
Sbjct:   210 ASFYESYYANKGIKIIKGTVATGFSTNSDGEVTEVKLEDGRTLEANIVVAGVGARPATSL 269

Query:   238 FERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCI 297
             F+   L    GGI+ DG F+T +P ++A+GDVA FP+KMY  T RVEH D+AR+SA   +
Sbjct:   270 FKGQ-LEEEKGGIKTDGFFKTSVPDVYALGDVATFPMKMYGGTRRVEHADNARKSAAQAV 328

Query:   298 KALLSAQTHT----YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPK---- 349
             KA+ + +       YDYLPYFYSR F       K+ W+F+G+NVGE++  G+ DPK    
Sbjct:   329 KAIKAGEEGKTIPDYDYLPYFYSRFF-------KLSWEFYGENVGESVLFGDNDPKSPKP 381

Query:   350 -IATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIA 404
                T+W+  GK+ GV +E G+ EE + +  +AR+QP V+   L   S  EE L  A
Sbjct:   382 KFGTYWVKDGKVVGVFLEGGTQEEHKAIAKVARAQPSVES--LDVLS--EEGLSFA 433

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0016656 "monodehydroascorbate reductase (NADH) activity" evidence=ISS

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP;RCA

GO:0009610 "response to symbiotic fungus" evidence=IEP

GO:0043903 "regulation of symbiosis, encompassing mutualism through parasitism" evidence=IMP

GO:0007165 "signal transduction" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

TIGR_CMR|SPO_3737 SPO_3737 "pyridine nucleotide-disulphide oxidoreductase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 114/389 (29%), Positives = 180/389 (46%)

Query:     3 DGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE-WYKEKGI 61
             +G + ++  E   PY+RP L+K YL   + +  RL  F            PE +Y E+ I
Sbjct:    26 EGEITLIGAEPVPPYQRPPLSKAYLLG-EMEKERL--F----------LRPESFYAEQNI 72

Query:    62 EMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVA 121
              +     V++ID   +T ++  G+++ Y  L + TG    R P  IGG L GVH +RD+A
Sbjct:    73 ALRLNARVSAIDPAAKT-VSLGGEVIPYDQLALTTGSEPRRLPAAIGGDLAGVHVVRDLA 131

Query:   122 DADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRY 181
             D DA+  S+ +  +       YIG+E AA      +  T++   + +LQR+  P  +  +
Sbjct:   132 DIDAMAPSVTEGARALIVGGGYIGLEAAAVCAKRGVQVTLVEMADRILQRVAAPETSAYF 191

Query:   182 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERV 241
               L+  +GV   +G  +  L  G+ GRV    L DGS +  D +V+G+G  P  +  E  
Sbjct:   192 RALHTGHGVDIREGVGLTRL-IGAQGRVTGAVLTDGSELPVDLVVVGVGIAPATALAEAA 250

Query:   242 GLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 301
             GL     GI+ D Q RT  P I+A GD A+FP K      R+E V +A   A+   + + 
Sbjct:   251 GLVLE-NGIRTDAQGRTSDPSIWAAGDCASFPYK--GGRIRLESVPNAIDQAETVAQNMQ 307

Query:   302 SAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-ETIEIGNFDPKIATFWIDSGKL 360
              A    Y   P+F+S   +Y+     V  Q  G N G + +     + +  +FW  +G  
Sbjct:   308 GAGKD-YVAQPWFWSD--QYD-----VKLQIAGLNTGYDRVVTRPGEGQTVSFWYYTGDQ 359

Query:   361 KGVLVESGSPEEFQLLPTLARSQPFVDKA 389
                +     P  + +   L  S    D A
Sbjct:   360 LVAVDAMNDPRAYMVGKRLIDSGKTADPA 388

GO:0008152 "metabolic process" evidence=ISS

GO:0015036 "disulfide oxidoreductase activity" evidence=ISS

UNIPROTKB|P95146 Rv1869c "Probable reductase" [Mycobacterium tuberculosis H37Rv (taxid:83332)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 112/385 (29%), Positives = 182/385 (47%)

Query:     4 GRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEM 63
             GR+ +   E + PY+RP L+K +L    KK   L  F          QT +WY++  +++
Sbjct:    30 GRIILFGDEEHLPYDRPPLSKEFL--AGKKS--LSDFTI--------QTSDWYRDHDVDV 77

Query:    64 IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA 123
                  V+S+D    T+    G  ++Y  L++ATG +A R P   G    GVHY+R   DA
Sbjct:    78 RLGVRVSSLDRSAHTVELPDGAAVRYDKLLLATG-SAPRRPPIPGSDAAGVHYLRSYNDA 136

Query:   124 DALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQ 183
              AL S L +          +IG+EVAA+A    +D T++      L      ++ + +  
Sbjct:   137 VALNSVLVQGSSLAVVGAGWIGLEVAASARQRGVDVTVVETAIQPLLAALGEAVGKVFAD 196

Query:   184 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL 243
             L++  GV       ++ + A +DG+   +K+ DGST+ AD +++ +GAKP V   ++ GL
Sbjct:   197 LHRDQGVDLRLQTQLEEITA-ADGKATGLKMRDGSTVAADAVLVAVGAKPNVELAQQAGL 255

Query:   244 NSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA 303
                 GG+ VD   RT  P I+A+GD+AA    +     R EH  +A +        +L  
Sbjct:   256 AMGEGGVLVDASLRTSDPDIYAVGDIAAAEHPLLGTRVRTEHWANALKQPAVAAAGMLG- 314

Query:   304 QTHTYDYLPYFYSRVF----EYEG-SPRKVWWQFFGDNVG-ETIEIG-NFDPKI-----A 351
             +   Y  LPY ++  +    EY G +P      F G+  G E +    + D ++      
Sbjct:   315 RPGEYAELPYLFTDQYDLGMEYVGHAPSCDRVVFRGNVAGREFLSFWLDGDSRVLAGMNV 374

Query:   352 TFWIDSGKLKGVLVESGSPEEFQLL 376
               W     +KG L+ SG+P +   L
Sbjct:   375 NVWDVVDDVKG-LIRSGNPVDVDRL 398

GO:0005576 "extracellular region" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|D5IGG6 fdr "Ferredoxin--NAD(P)(+) reductase fdr" [Sphingomonas sp. (taxid:28214)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 97/319 (30%), Positives = 148/319 (46%)

Query:     4 GRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEM 63
             G + I+  E   PYERP L+K YL       A   GF   +     R    W  ++ I M
Sbjct:    31 GTIAIIGAEPDLPYERPPLSKEYL-------AAEKGFERIL----IRPASFW-NDRHIAM 78

Query:    64 IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA 123
                  V  +D  ++ +    G+ + YG L+   G +A R  +  G  L GVHY+R  AD 
Sbjct:    79 HLGCAVERVDPTQRLVFLADGRSMGYGDLVWCAGGSARRL-DCTGHDLGGVHYVRTRADT 137

Query:   124 DALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQ 183
             DAL + L    K       YIG+E AA    +  + T+I   + +L R+    L++ +E+
Sbjct:   138 DALAAELPGVSKVVIIGGGYIGLEAAAVMAKFGKNVTLIEALDRVLARVAGEPLSRFFEE 197

Query:   184 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL 243
              ++  GV       +  L  G DGRV  V+L D   I AD +++GIG  P +SP    G 
Sbjct:   198 KHRSRGVDVRLRTKVGCL-LGQDGRVTHVELNDADPIPADLVIVGIGIIPAISPLVVAGA 256

Query:   244 NSSVGGIQVDGQFRTRMPGIFAIGDVAAF--PLKMYDRTARVEHVDHARQSAQHCIKALL 301
              +S  G+ VD   RT +P ++A+GD AA        D   R+E V +A   A    + + 
Sbjct:   257 KAS-NGLLVDASGRTSIPHVYALGDCAAHVNSFAPNDIPIRLESVQNANDQAVVVARTIC 315

Query:   302 SAQTHTYDYLPYFYSRVFE 320
                   Y  +P+F+S  ++
Sbjct:   316 GTAAQ-YHAVPWFWSSQYD 333

GO:0004324 "ferredoxin-NADP+ reductase activity" evidence=ISS

GO:0008860 "ferredoxin-NAD+ reductase activity" evidence=ISS

GO:0046232 "carbazole catabolic process" evidence=IDA

GO:0050661 "NADP binding" evidence=ISS

GO:0051287 "NAD binding" evidence=ISS

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=ISS

GO:0071949 "FAD binding" evidence=ISS

WB|WBGene00017640 F20D6.11 [Caenorhabditis elegans (taxid:6239)]

 Score = 334 (122.6 bits), Expect = 8.6e-30, P = 8.6e-30
 Identities = 95/324 (29%), Positives = 158/324 (48%)

Query:    50 RQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGG 109
             R+   +Y+E+ ++ + +  V +++ + + +  ++G+ + Y  LI+ATG    +  +  G 
Sbjct:   201 RKDDAFYEERNVKFLLKTSVIAVNHKSREVSLSNGETVVYSKLIIATGGNVRKL-QVPGS 259

Query:   110 YLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLL 169
              L  + Y+R V +A+ +IS+L   K        +IGMEVA+A        T+I      L
Sbjct:   260 DLKNICYLRKVEEAN-IISNLHPGKHVVCVGSSFIGMEVASALAEKAASVTVISNTPEPL 318

Query:   170 QRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI 229
               +F   + +     +++ GVKF   A++  L     G V+ V LE+G  +D D +V GI
Sbjct:   319 P-VFGSDIGKGIRLKFEEKGVKFELAANVVALRGNDQGEVSKVILENGKELDVDLLVCGI 377

Query:   230 GAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYD-RTARVEHVD 287
             G  P     E  G+   + G I+VD +FRT +  IFA+GDV   PL ++D  +  ++H  
Sbjct:   378 GVTPATKFLEGSGIKLDNRGFIEVDEKFRTNISYIFAMGDVVTAPLPLWDIDSINIQHFQ 437

Query:   288 HARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFD 347
              A+   QH +   +  +      +PYF++  F   G       +F G N G T E  N D
Sbjct:   438 TAQAHGQH-LGYTIVGKPQPGPIVPYFWTLFFFAFGL------KFSGCNQGSTKEYTNGD 490

Query:   348 PKIATFW-IDSGKLKGVLVESGSP 370
             P+  TF      K K V V +G P
Sbjct:   491 PETGTFIRYFLKKDKVVAVAAGGP 514

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

UNIPROTKB|Q19655 F20D6.11 "Protein F20D6.11" [Caenorhabditis elegans (taxid:6239)]

 Score = 334 (122.6 bits), Expect = 8.6e-30, P = 8.6e-30
 Identities = 95/324 (29%), Positives = 158/324 (48%)

Query:    50 RQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGG 109
             R+   +Y+E+ ++ + +  V +++ + + +  ++G+ + Y  LI+ATG    +  +  G 
Sbjct:   201 RKDDAFYEERNVKFLLKTSVIAVNHKSREVSLSNGETVVYSKLIIATGGNVRKL-QVPGS 259

Query:   110 YLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLL 169
              L  + Y+R V +A+ +IS+L   K        +IGMEVA+A        T+I      L
Sbjct:   260 DLKNICYLRKVEEAN-IISNLHPGKHVVCVGSSFIGMEVASALAEKAASVTVISNTPEPL 318

Query:   170 QRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI 229
               +F   + +     +++ GVKF   A++  L     G V+ V LE+G  +D D +V GI
Sbjct:   319 P-VFGSDIGKGIRLKFEEKGVKFELAANVVALRGNDQGEVSKVILENGKELDVDLLVCGI 377

Query:   230 GAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYD-RTARVEHVD 287
             G  P     E  G+   + G I+VD +FRT +  IFA+GDV   PL ++D  +  ++H  
Sbjct:   378 GVTPATKFLEGSGIKLDNRGFIEVDEKFRTNISYIFAMGDVVTAPLPLWDIDSINIQHFQ 437

Query:   288 HARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFD 347
              A+   QH +   +  +      +PYF++  F   G       +F G N G T E  N D
Sbjct:   438 TAQAHGQH-LGYTIVGKPQPGPIVPYFWTLFFFAFGL------KFSGCNQGSTKEYTNGD 490

Query:   348 PKIATFW-IDSGKLKGVLVESGSP 370
             P+  TF      K K V V +G P
Sbjct:   491 PETGTFIRYFLKKDKVVAVAAGGP 514

GO:0005739 "mitochondrion" evidence=ISS

GO:0051882 "mitochondrial depolarization" evidence=ISS

GO:0008656 "cysteine-type endopeptidase activator activity involved in apoptotic process" evidence=ISS

GO:0008635 "activation of cysteine-type endopeptidase activity involved in apoptotic process by cytochrome c" evidence=ISS

GO:0006917 "induction of apoptosis" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P92947	MDARP_ARATH	1, ., 6, ., 5, ., 4	0.8333	0.9855	0.8275	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.6.5.4	0.991
3rd Layer	1.6.5	0.976

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00002544001 SubName- Full=Chromosome chr2 scaffold_132, whole genome shotgun sequence; (490 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	414
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	3e-55
COG0446	415	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent	4e-39
PRK09754	396	PRK09754, PRK09754, phenylpropionate dioxygenase f	4e-35
COG1251	793	COG1251, NirB, NAD(P)H-nitrite reductase [Energy p	4e-33
TIGR02374	785	TIGR02374, nitri_red_nirB, nitrite reductase [NAD(	2e-30
TIGR03385	427	TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase	6e-28
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	2e-23
COG1252	405	COG1252, Ndh, NADH dehydrogenase, FAD-containing s	2e-23
PRK09564	444	PRK09564, PRK09564, coenzyme A disulfide reductase	2e-23
TIGR01350	460	TIGR01350, lipoamide_DH, dihydrolipoamide dehydrog	5e-23
PRK04965	377	PRK04965, PRK04965, NADH:flavorubredoxin oxidoredu	2e-20
PRK06116	450	PRK06116, PRK06116, glutathione reductase; Validat	6e-19
PRK05976	472	PRK05976, PRK05976, dihydrolipoamide dehydrogenase	6e-17
COG0492	305	COG0492, TrxB, Thioredoxin reductase [Posttranslat	4e-16
PRK13512	438	PRK13512, PRK13512, coenzyme A disulfide reductase	6e-16
PRK06370	463	PRK06370, PRK06370, mercuric reductase; Validated	1e-15
PRK06416	462	PRK06416, PRK06416, dihydrolipoamide dehydrogenase	2e-15
pfam00070	82	pfam00070, Pyr_redox, Pyridine nucleotide-disulphi	2e-15
PRK14989	847	PRK14989, PRK14989, nitrite reductase subunit NirD	2e-15
TIGR01421	450	TIGR01421, gluta_reduc_1, glutathione-disulfide re	7e-15
TIGR02053	463	TIGR02053, MerA, mercuric reductase	1e-14
PRK07818	466	PRK07818, PRK07818, dihydrolipoamide dehydrogenase	2e-14
PTZ00058	561	PTZ00058, PTZ00058, glutathione reductase; Provisi	4e-14
PRK05249	461	PRK05249, PRK05249, soluble pyridine nucleotide tr	5e-13
PRK06292	460	PRK06292, PRK06292, dihydrolipoamide dehydrogenase	7e-13
PRK07251	438	PRK07251, PRK07251, pyridine nucleotide-disulfide	1e-12
TIGR01424	446	TIGR01424, gluta_reduc_2, glutathione-disulfide re	2e-12
PRK12771	564	PRK12771, PRK12771, putative glutamate synthase (N	4e-12
TIGR01423	486	TIGR01423, trypano_reduc, trypanothione-disulfide	7e-12
PRK06327	475	PRK06327, PRK06327, dihydrolipoamide dehydrogenase	9e-12
PRK11749	457	PRK11749, PRK11749, dihydropyrimidine dehydrogenas	2e-11
PTZ00052	499	PTZ00052, PTZ00052, thioredoxin reductase; Provisi	2e-10
TIGR01438	484	TIGR01438, TGR, thioredoxin and glutathione reduct	5e-10
TIGR03169	364	TIGR03169, Nterm_to_SelD, pyridine nucleotide-disu	5e-10
PRK12770	352	PRK12770, PRK12770, putative glutamate synthase su	5e-10
PRK07846	451	PRK07846, PRK07846, mycothione reductase; Reviewed	1e-09
TIGR01292	299	TIGR01292, TRX_reduct, thioredoxin-disulfide reduc	4e-09
TIGR01316	449	TIGR01316, gltA, glutamate synthase (NADPH), homot	5e-09
PRK06115	466	PRK06115, PRK06115, dihydrolipoamide dehydrogenase	7e-09
PRK06912	458	PRK06912, acoL, dihydrolipoamide dehydrogenase; Va	7e-09
TIGR03452	452	TIGR03452, mycothione_red, mycothione reductase	7e-09
PRK08010	441	PRK08010, PRK08010, pyridine nucleotide-disulfide	1e-08
TIGR03140	515	TIGR03140, AhpF, alkyl hydroperoxide reductase sub	4e-08
PLN02507	499	PLN02507, PLN02507, glutathione reductase	5e-08
PLN02546	558	PLN02546, PLN02546, glutathione reductase	1e-07
PTZ00318	424	PTZ00318, PTZ00318, NADH dehydrogenase-like protei	1e-07
PRK14694	468	PRK14694, PRK14694, putative mercuric reductase; P	3e-07
PRK12810	471	PRK12810, gltD, glutamate synthase subunit beta; R	3e-07
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	2e-06
PRK09853	1019	PRK09853, PRK09853, putative selenate reductase su	2e-06
PRK12814	652	PRK12814, PRK12814, putative NADPH-dependent gluta	3e-06
PRK07845	466	PRK07845, PRK07845, flavoprotein disulfide reducta	7e-06
PRK12778	752	PRK12778, PRK12778, putative bifunctional 2-polypr	1e-05
COG3634	520	COG3634, AhpF, Alkyl hydroperoxide reductase, larg	3e-05
PRK06467	471	PRK06467, PRK06467, dihydrolipoamide dehydrogenase	7e-05
pfam13738	202	pfam13738, Pyr_redox_3, Pyridine nucleotide-disulp	7e-05
COG0493	457	COG0493, GltD, NADPH-dependent glutamate synthase	2e-04
TIGR03315	1012	TIGR03315, Se_ygfK, putative selenate reductase, Y	2e-04
COG1252	405	COG1252, Ndh, NADH dehydrogenase, FAD-containing s	3e-04
PRK12831	464	PRK12831, PRK12831, putative oxidoreductase; Provi	3e-04
PRK14727	479	PRK14727, PRK14727, putative mercuric reductase; P	0.001
TIGR03140	515	TIGR03140, AhpF, alkyl hydroperoxide reductase sub	0.003
PRK00711	416	PRK00711, PRK00711, D-amino acid dehydrogenase sma	0.003
PRK15317	517	PRK15317, PRK15317, alkyl hydroperoxide reductase	0.003

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score =  183 bits (467), Expect = 3e-55
 Identities = 86/278 (30%), Positives = 128/278 (46%), Gaps = 18/278 (6%)

Query: 1   MADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKG 60
               ++ ++ +E    Y R  L K  L  L+                G     E YKE G
Sbjct: 20  RLGLKVALIEREGGTCYNRGCLPKKLL--LEVAEGLELA-------IGLALPEEVYKEFG 70

Query: 61  IEMIYQDPVTSIDIEKQTLITNS---GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYI 117
           +E++    V  ID  ++T++      G+ + Y  LI+ATG         I G    V  +
Sbjct: 71  VEVLLGTEVVDIDRGEKTVVLKDVETGREITYDKLIIATGARPRIPG--IPGV--EVATL 126

Query: 118 RDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSL 177
           R V D+D ++  LE  K+VVVVGGGYIG+E+AAA      + T++   + LL R      
Sbjct: 127 RGVIDSDEILELLELPKRVVVVGGGYIGLELAAALAKLGKEVTVVERRDRLLARADDEIS 186

Query: 178 AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP 237
           A   E+L +   +       +  +    DG+V  VKL DG  +DAD +++ IG +P    
Sbjct: 187 AALLEKLEKL-LLGVTVLLVVVVVVKVGDGKVVEVKLGDGEELDADVVLVAIGRRPNTEL 245

Query: 238 FERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPL 274
            E+ G+     G I VD   RT +PGI+A GDVA    
Sbjct: 246 LEQAGVELDERGYIVVDEYLRTSVPGIYAAGDVAEGKP 283

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

 Score =  144 bits (365), Expect = 4e-39
 Identities = 83/320 (25%), Positives = 134/320 (41%), Gaps = 22/320 (6%)

Query: 8   IVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQD 67
           ++ +E    Y R  L+      +      L               P + +  GI++    
Sbjct: 28  LIGREPKYSYYRCPLSLYVGGGI-ASLEDLRYP------------PRFNRATGIDVRTGT 74

Query: 68  PVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALI 127
            VTSID E + ++ + G++ +Y  L++ATG      P        GV  +R   DA+AL 
Sbjct: 75  EVTSIDPENKVVLLDDGEI-EYDYLVLATGARPRPPP---ISDWEGVVTLRLREDAEALK 130

Query: 128 SSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ 187
              E  K VVVVG G IG+E A AA       T+I   + L  +L  P +A+   +L ++
Sbjct: 131 GGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEK 190

Query: 188 NGVKFVKGASIKNLEAGSDGRVAA-VKLEDGSTIDADTIVIGIGAKPTV--SPFERVGLN 244
            GV+ + G  +  +E   +  V   V   DG  I AD ++IG G +P V  +     GL 
Sbjct: 191 YGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPNVVLANDALPGLA 250

Query: 245 SSVGGIQVDGQFRT-RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA 303
            + G + VD +  T + P ++A GDVA  P     +  R+     A  + +      ++ 
Sbjct: 251 LAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRI-AAENIAG 309

Query: 304 QTHTYDYLPYFYSRVFEYEG 323
                  L    S V +   
Sbjct: 310 ALRIPGLLGTVISDVGDLCA 329

Length = 415

>gnl|CDD|170080 PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

 Score =  133 bits (336), Expect = 4e-35
 Identities = 77/271 (28%), Positives = 123/271 (45%), Gaps = 24/271 (8%)

Query: 3   DGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIE 62
            G L + S E + PYERP L+K  L     +  ++                 W++E  + 
Sbjct: 28  TGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQV-------------LPANWWQENNVH 74

Query: 63  MIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGGYLPGVHYIRDV 120
           +     + ++  + + L+  +G+   +  L +ATG  A   P  + +G        +R  
Sbjct: 75  LHSGVTIKTLGRDTRELVLTNGESWHWDQLFIATGAAARPLPLLDALG---ERCFTLRHA 131

Query: 121 ADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR 180
            DA  L   L+  + VV+VG G IG+E+AA+A   +   T+I     ++ R   P   QR
Sbjct: 132 GDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRN-APPPVQR 190

Query: 181 Y-EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE 239
           Y  Q +QQ GV+ +   +I   E   DG    + L+ G T+ AD ++ GIG         
Sbjct: 191 YLLQRHQQAGVRILLNNAI---EHVVDGEKVELTLQSGETLQADVVIYGIGISANDQLAR 247

Query: 240 RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVA 270
              L+++  GI +D   RT  P IFA GDVA
Sbjct: 248 EANLDTA-NGIVIDEACRTCDPAIFAGGDVA 277

Length = 396

>gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion]

 Score =  131 bits (332), Expect = 4e-33
 Identities = 64/230 (27%), Positives = 110/230 (47%), Gaps = 14/230 (6%)

Query: 53  PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP 112
            +WY+E GI +   + V  ID   + + T++G+ + Y  LI+ATG      P   G  LP
Sbjct: 66  NDWYEENGITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPFILPIP-GSDLP 124

Query: 113 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL 172
           GV   R + D +A++      KK VV+GGG +G+E A       ++ T++     L++R 
Sbjct: 125 GVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQ 184

Query: 173 FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 232
              +  +   +  +  G+K +   + +  E   + +V  V+  DG+ I AD +V+ +G +
Sbjct: 185 LDRTAGRLLRRKLEDLGIKVLLEKNTE--EIVGEDKVEGVRFADGTEIPADLVVMAVGIR 242

Query: 233 PTVSPFERVGLNSSVG-----GIQVDGQFRTRMPGIFAIGDVAAFPLKMY 277
           P         L    G     GI V+   +T  P I+A+G+ A    K+Y
Sbjct: 243 P------NDELAKEAGLAVNRGIVVNDYMQTSDPDIYAVGECAEHRGKVY 286

Length = 793

>gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large subunit

 Score =  123 bits (310), Expect = 2e-30
 Identities = 67/267 (25%), Positives = 123/267 (46%), Gaps = 17/267 (6%)

Query: 5   RLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMI 64
            + I  +E +  Y R  L+       D     L                +WY++ GI + 
Sbjct: 26  EITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSK-------------DWYEKHGITLY 72

Query: 65  YQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADAD 124
             + V  ID +++ +IT++G+ L Y  LI+ATG      P   G    GV+  R + D D
Sbjct: 73  TGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYPFILPIP-GADKKGVYVFRTIEDLD 131

Query: 125 ALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQL 184
           A+++  ++ KK  V+GGG +G+E A       +D ++I     L+ +    +  +  ++ 
Sbjct: 132 AIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRE 191

Query: 185 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLN 244
            +Q G+ F+       +E     +   ++ +DGS+++AD IV+  G +P        G+ 
Sbjct: 192 LEQKGLTFLLEK--DTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPNDELAVSAGIK 249

Query: 245 SSVGGIQVDGQFRTRMPGIFAIGDVAA 271
            +  GI V+   +T  P I+A+G+ A 
Sbjct: 250 VN-RGIIVNDSMQTSDPDIYAVGECAE 275

[Central intermediary metabolism, Nitrogen metabolism]. Length = 785

>gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase

 Score =  114 bits (286), Expect = 6e-28
 Identities = 65/229 (28%), Positives = 111/229 (48%), Gaps = 14/229 (6%)

Query: 51  QTPE-WYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFP 104
            TPE + K++GI++     V  ++ E+QT++     TN      Y  LI++ G +    P
Sbjct: 48  YTPEVFIKKRGIDVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGASPIV-P 106

Query: 105 EKIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTII 162
              G  L  V  +R++ D DA+   ++  K + VV++GGGYIG+E+A A      + T+I
Sbjct: 107 NIEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLI 166

Query: 163 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 222
                +L +LF   + Q  E+  +++ +       + ++E    G         G    A
Sbjct: 167 HRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIE----GEERVKVFTSGGVYQA 222

Query: 223 DTIVIGIGAKPTVSPFERVGLNSSV-GGIQVDGQFRTRMPGIFAIGDVA 270
           D +++  G KP     +  GL     G I V+ +F+T +P I+A GDVA
Sbjct: 223 DMVILATGIKPNSELAKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVA 271

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol [Cellular processes, Detoxification]. Length = 427

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score =  101 bits (254), Expect = 2e-23
 Identities = 57/197 (28%), Positives = 97/197 (49%), Gaps = 11/197 (5%)

Query: 81  TNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVG 140
               + +   ++I+ATG +  R P   G  + G   +    D+   +  LE  K +V+VG
Sbjct: 128 GEDKETITADNIIIATG-SRPRIPPGPG--IDGARIL----DSSDALFLLELPKSLVIVG 180

Query: 141 GGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKN 200
           GGYIG+E A+         T++   + +L     P +++   +  ++ GVK +    +  
Sbjct: 181 GGYIGLEFASVFAALGSKVTVVERGDRILPG-EDPEISKELTKQLEKGGVKILLNTKVTA 239

Query: 201 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFR 257
           +E   DG +  ++  +G TI+AD +++ IG KP       E  G+     G I+VD Q  
Sbjct: 240 VEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMT 299

Query: 258 TRMPGIFAIGDVAAFPL 274
           T +PGI+AIGDV   P+
Sbjct: 300 TNVPGIYAIGDVIGGPM 316

Length = 454

>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

 Score =  100 bits (252), Expect = 2e-23
 Identities = 58/246 (23%), Positives = 94/246 (38%), Gaps = 52/246 (21%)

Query: 64  IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGV----HYIRD 119
             Q  VT ID + + +       + Y  L+VA G   + F       +PG       ++ 
Sbjct: 75  FVQGEVTDIDRDAKKVTLADLGEISYDYLVVALGSETNYFG------IPGAAEYAFGLKT 128

Query: 120 VADADA----LISSLEKAKK---------VVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 166
           + DA      L+ + EKA +         +V+VGGG  G+E+A             F  +
Sbjct: 129 LEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVD 188

Query: 167 ------HLLQRL------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL 214
                  L++        F P L++  E+  ++ GV+ + G  +  +          V L
Sbjct: 189 PSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPVTEVTPDG------VTL 242

Query: 215 EDG-STIDADTIVIGIGAKP-----TVSPFERVGLNSSVGGIQVDGQFR-TRMPGIFAIG 267
           +DG   I ADT+V   G +       +S  E        G + V+   +    P IFA G
Sbjct: 243 KDGEEEIPADTVVWAAGVRASPLLKDLSGLE----TDRRGRLVVNPTLQVPGHPDIFAAG 298

Query: 268 DVAAFP 273
           D AA  
Sbjct: 299 DCAAVI 304

Length = 405

>gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed

 Score =  101 bits (253), Expect = 2e-23
 Identities = 64/227 (28%), Positives = 104/227 (45%), Gaps = 12/227 (5%)

Query: 52  TPEWYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPEK 106
           TPE + + GI++  +  V  +D + +T+      T S     Y  L++ATG      P  
Sbjct: 62  TPEEFIKSGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGAR-PIIPPI 120

Query: 107 IGGYLPGVHYIRDVADADALISSL--EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP 164
               L  V+ ++ + D  AL   L  E+ K +V++G G+IG+E   AA     +  II  
Sbjct: 121 KNINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQL 180

Query: 165 ENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADT 224
           E+ +L   F   +    E+  ++NGV+      +K+L    + +V  V   D    +AD 
Sbjct: 181 EDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIG--EDKVEGVV-TDKGEYEADV 237

Query: 225 IVIGIGAKPTVSPFERVGLNS-SVGGIQVDGQFRTRMPGIFAIGDVA 270
           +++  G KP     E  GL +   G I VD    T +  I+A GD A
Sbjct: 238 VIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGETSIENIYAAGDCA 284

Length = 444

>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase

 Score =  100 bits (250), Expect = 5e-23
 Identities = 48/197 (24%), Positives = 89/197 (45%), Gaps = 10/197 (5%)

Query: 81  TNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVG 140
            N  + L+  ++I+ATG      P    G       +  V  +   ++  E  + +V++G
Sbjct: 124 ENGEETLEAKNIIIATGSRPRSLP----GPFDFDGKV--VITSTGALNLEEVPESLVIIG 177

Query: 141 GGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKN 200
           GG IG+E A+         T+I   + +L       +++  ++  ++ GVK +    +  
Sbjct: 178 GGVIGVEFASIFASLGSKVTVIEMLDRILP-GEDAEVSKVLQKALKKKGVKILTNTKVTA 236

Query: 201 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFR 257
           +E   D      K  +  T+  + +++ +G KP       E++G+     G I VD   R
Sbjct: 237 VEKNDDQVTYENKGGETETLTGEKVLVAVGRKPNTEGLGLEKLGVELDERGRIVVDEYMR 296

Query: 258 TRMPGIFAIGDVAAFPL 274
           T +PGI+AIGDV   P+
Sbjct: 297 TNVPGIYAIGDVIGGPM 313

This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. Length = 460

>gnl|CDD|179902 PRK04965, PRK04965, NADH:flavorubredoxin oxidoreductase; Provisional

 Score = 91.9 bits (229), Expect = 2e-20
 Identities = 59/213 (27%), Positives = 100/213 (46%), Gaps = 13/213 (6%)

Query: 61  IEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDV 120
           + +     VT ID E Q + +  G   +Y  L++ATG +A   P      +  ++  ++ 
Sbjct: 73  LRLFPHTWVTDIDAEAQVVKSQ-GNQWQYDKLVLATGASAFVPPIPGRELMLTLNSQQEY 131

Query: 121 ADADALISSLEKAKKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLA 178
             A+  +     A++V+VVGGG IG E+A      G  +  T++     LL  L  P ++
Sbjct: 132 RAAETQLRD---AQRVLVVGGGLIGTELAMDLCRAGKAV--TLVDNAASLLASLMPPEVS 186

Query: 179 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF 238
            R +    + GV  +  + ++ LE    G      L+ G +I+ D ++   G +P  +  
Sbjct: 187 SRLQHRLTEMGVHLLLKSQLQGLEKTDSGIR--ATLDSGRSIEVDAVIAAAGLRPNTALA 244

Query: 239 ERVGLNSSVG-GIQVDGQFRTRMPGIFAIGDVA 270
            R GL  +V  GI VD   +T  P I+A+GD A
Sbjct: 245 RRAGL--AVNRGIVVDSYLQTSAPDIYALGDCA 275

Length = 377

>gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated

 Score = 87.9 bits (219), Expect = 6e-19
 Identities = 46/140 (32%), Positives = 68/140 (48%), Gaps = 7/140 (5%)

Query: 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 193
           K+V VVG GYI +E A    G   +T +         R F P + +   +  ++ G++  
Sbjct: 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFV-RGDAPLRGFDPDIRETLVEEMEKKGIRLH 226

Query: 194 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVG--LNSSVGG 249
             A  K +E  +DG +  + LEDG T+  D ++  IG +P       E  G  LN   G 
Sbjct: 227 TNAVPKAVEKNADGSLT-LTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEK-GY 284

Query: 250 IQVDGQFRTRMPGIFAIGDV 269
           I VD    T +PGI+A+GDV
Sbjct: 285 IIVDEYQNTNVPGIYAVGDV 304

Length = 450

>gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated

 Score = 81.9 bits (203), Expect = 6e-17
 Identities = 56/184 (30%), Positives = 96/184 (52%), Gaps = 14/184 (7%)

Query: 92  LIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK-AKKVVVVGGGYIGMEVAA 150
           L++ATG   SR P ++ G      Y+  ++  +AL  SLE   K +V+VGGG IG+E A+
Sbjct: 146 LLIATG---SR-PVELPGLPFDGEYV--ISSDEAL--SLETLPKSLVIVGGGVIGLEWAS 197

Query: 151 AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA 210
               + ++ T++   + +L       L++   +L ++ GV+ V GA +  L    DG V 
Sbjct: 198 MLADFGVEVTVVEAADRILP-TEDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVL 256

Query: 211 AVKLEDGS--TIDADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQVDGQFRTRMPGIFAI 266
            V   +G   T++AD +++ +G +P       E   ++   G IQ+D   +T+   I+AI
Sbjct: 257 IVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGFIQIDDFCQTKERHIYAI 316

Query: 267 GDVA 270
           GDV 
Sbjct: 317 GDVI 320

Length = 472

>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

 Score = 78.1 bits (193), Expect = 4e-16
 Identities = 56/225 (24%), Positives = 90/225 (40%), Gaps = 28/225 (12%)

Query: 60  GIEMIYQDPVTSIDIEKQT-LITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP----GV 114
           G+E++  D V  +++E     +       +  ++I+ATG  A      + G       GV
Sbjct: 75  GVEIVE-DEVEKVELEGGPFKVKTDKGTYEAKAVIIATG--AGARKLGVPGEEEFEGKGV 131

Query: 115 HYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFT 174
            Y    A  D       K K VVV+GGG   +E A          T++   +      F 
Sbjct: 132 SY---CATCDGF----FKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDE-----FR 179

Query: 175 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG----STIDADTIVIGIG 230
                  E+L +   ++ +    +K +  G D  V  V L++       +  D + I IG
Sbjct: 180 AEEILV-ERLKKNVKIEVLTNTVVKEIL-GDD--VEGVVLKNVKGEEKELPVDGVFIAIG 235

Query: 231 AKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 275
             P     + +G+    G I VD +  T +PGIFA GDVA    +
Sbjct: 236 HLPNTELLKGLGVLDENGYIVVDEEMETSVPGIFAAGDVADKNGR 280

Length = 305

>gnl|CDD|184103 PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional

 Score = 78.7 bits (194), Expect = 6e-16
 Identities = 57/229 (24%), Positives = 98/229 (42%), Gaps = 22/229 (9%)

Query: 52  TPEWYKE-KGIEMIYQDPVTSIDIEKQTL-----ITNSGKLLKYGSLIVATGCTASRFPE 105
           TPE + + K I +     V +I+ E+QT+      TN      Y  LI++ G +A+    
Sbjct: 63  TPEKFYDRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLGF 122

Query: 106 KIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF 163
           +          +R++ D DA+   ++  +  K +VVG GYI +EV        L  T+I 
Sbjct: 123 ES----DITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIH 178

Query: 164 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 223
             + +  +L    + Q       +  + +     I  +    +G    V  + G     D
Sbjct: 179 RSDKIN-KLMDADMNQPILDELDKREIPYRLNEEIDAI----NGN--EVTFKSGKVEHYD 231

Query: 224 TIVIGIGAKPTVSPFE--RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVA 270
            I+ G+G  P     E   + L+   G I V+ +F T +P I+AIGD+ 
Sbjct: 232 MIIEGVGTHPNSKFIESSNIKLDDK-GFIPVNDKFETNVPNIYAIGDII 279

Length = 438

>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated

 Score = 77.9 bits (193), Expect = 1e-15
 Identities = 51/196 (26%), Positives = 82/196 (41%), Gaps = 22/196 (11%)

Query: 83  SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIR-----DVADADALISSLEKAKKVV 137
            G+ L+   + + TG  A+  P      +PG+  +       +   D L   L      V
Sbjct: 128 GGETLRAKRIFINTGARAAI-PP-----IPGLDEVGYLTNETIFSLDELPEHL------V 175

Query: 138 VVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGAS 197
           ++GGGYIG+E A     +  + T+I     LL R     +A    ++ ++ G+     A 
Sbjct: 176 IIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR-EDEDVAAAVREILEREGIDVRLNAE 234

Query: 198 IKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVD 253
              +E   DG    +    G+  I    I++ +G  P       E  G+   + G I+VD
Sbjct: 235 CIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVD 294

Query: 254 GQFRTRMPGIFAIGDV 269
            Q RT  PGI+A GD 
Sbjct: 295 DQLRTTNPGIYAAGDC 310

Length = 463

>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed

 Score = 77.5 bits (192), Expect = 2e-15
 Identities = 62/204 (30%), Positives = 103/204 (50%), Gaps = 27/204 (13%)

Query: 81  TNSGKLLKYGSLIVATGCTASRFPE-KIGGYLPGVHYIRDVADAD-ALISSLEKA-KKVV 137
            +  +     ++I+ATG      P  +I G        R +  +D AL  +L++  K +V
Sbjct: 127 EDGEQTYTAKNIILATGSRPRELPGIEIDG--------RVIWTSDEAL--NLDEVPKSLV 176

Query: 138 VVGGGYIGMEVAAAAVGWK---LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVK 194
           V+GGGYIG+E A+A   +     + TI+     +L       +++  E+  ++ G+K   
Sbjct: 177 VIGGGYIGVEFASA---YASLGAEVTIVEALPRILP-GEDKEISKLAERALKKRGIKIKT 232

Query: 195 GASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSP--FERVGLNSSVGG 249
           GA  K +E   DG    V LEDG    T++AD +++ +G +P       E +G+ +  G 
Sbjct: 233 GAKAKKVEQTDDG--VTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTDRGF 290

Query: 250 IQVDGQFRTRMPGIFAIGDVAAFP 273
           I+VD Q RT +P I+AIGD+   P
Sbjct: 291 IEVDEQLRTNVPNIYAIGDIVGGP 314

Length = 462

>gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase

 Score = 70.7 bits (174), Expect = 2e-15
 Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVK 194
           +VVVVGGGYIG+E A+A        T++   + LL R F   +A+  ++  ++NG++ + 
Sbjct: 1   RVVVVGGGYIGLEFASALAKLGSKVTVVERRDRLL-RGFDEEIAKILQEKLEKNGIEVLL 59

Query: 195 GASIKNLEAGSDGRVAAVKLEDG 217
             +++ +E   DG V  +K  DG
Sbjct: 60  NTTVEEIEGNGDGVVVKLKTGDG 82

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 82

>gnl|CDD|184951 PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional

 Score = 78.2 bits (193), Expect = 2e-15
 Identities = 62/238 (26%), Positives = 116/238 (48%), Gaps = 26/238 (10%)

Query: 53  PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP 112
             +Y++ GI+++  +   +I+ +++ + +++G+ + Y  LI+ATG      P K G    
Sbjct: 66  EGFYEKHGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPPIK-GSETQ 124

Query: 113 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL 172
                R + D +A+ +   ++K+  VVGGG +G+E A A     ++T +I          
Sbjct: 125 DCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVETHVI---------E 175

Query: 173 FTPSLAQRYEQLYQQNGVKF--------VKGASIKN----LEAGSDGRVAAVKLEDGSTI 220
           F P L    EQL Q  G +         V+  + KN    ++ G + R   ++  DGS +
Sbjct: 176 FAPMLMA--EQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEAR-KTMRFADGSEL 232

Query: 221 DADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMY 277
           + D IV   G +P      + GL  +  GGI ++   +T  P I+AIG+ A++  +++
Sbjct: 233 EVDFIVFSTGIRPQDKLATQCGLAVAPRGGIVINDSCQTSDPDIYAIGECASWNNRVF 290

Length = 847

>gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase, animal/bacterial

 Score = 75.6 bits (186), Expect = 7e-15
 Identities = 63/219 (28%), Positives = 103/219 (47%), Gaps = 23/219 (10%)

Query: 64  IYQDPVTSIDIE---------KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGV 114
           IYQ  +    ++         K   +  +G+      +++ATG   S FPE I G   G 
Sbjct: 96  IYQKNLEKNKVDVIFGHARFTKDGTVEVNGRDYTAPHILIATGGKPS-FPENIPGAELGT 154

Query: 115 HYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFT 174
                  D+D   +  E  K+VV+VG GYI +E+A    G   +T ++     +L R F 
Sbjct: 155 -------DSDGFFALEELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL-RSFD 206

Query: 175 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTI-DADTIVIGIGAKP 233
             +++   + Y++ G+   K +    +E   +G++  +  EDG +I D D ++  IG KP
Sbjct: 207 SMISETITEEYEKEGINVHKLSKPVKVEKTVEGKL-VIHFEDGKSIDDVDELIWAIGRKP 265

Query: 234 TVSPF--ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDV 269
                  E VG+  +  G I VD    T +PGI+A+GDV
Sbjct: 266 NTKGLGLENVGIKLNEKGQIIVDEYQNTNVPGIYALGDV 304

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria [Energy metabolism, Electron transport]. Length = 450

>gnl|CDD|233700 TIGR02053, MerA, mercuric reductase

 Score = 75.2 bits (185), Expect = 1e-14
 Identities = 49/181 (27%), Positives = 86/181 (47%), Gaps = 12/181 (6%)

Query: 93  IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAA 152
           ++ATG   +  P      +PG+        ++  ++     + + V+GGG IG+E+A A 
Sbjct: 133 LIATGARPAIPP------IPGLKEA-GYLTSEEALALDRIPESLAVIGGGAIGVELAQAF 185

Query: 153 VGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV 212
                + TI+   + LL R   P ++   E+   + G++ V  A +K +     G++  V
Sbjct: 186 ARLGSEVTILQRSDRLLPR-EEPEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITV 244

Query: 213 KLEDGS-TIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGD 268
           +   G   ++AD +++  G +P       E+ G+     GGI VD   RT  PGI+A GD
Sbjct: 245 EKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPGIYAAGD 304

Query: 269 V 269
           V
Sbjct: 305 V 305

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH [Cellular processes, Detoxification]. Length = 463

>gnl|CDD|236106 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed

 Score = 74.7 bits (184), Expect = 2e-14
 Identities = 56/200 (28%), Positives = 93/200 (46%), Gaps = 28/200 (14%)

Query: 84  GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGY 143
            + + + + I+ATG +           LPG     +V   +  I S E  K +V+ G G 
Sbjct: 131 TETVTFDNAIIATGSSTR--------LLPGTSLSENVVTYEEQILSRELPKSIVIAGAGA 182

Query: 144 IGMEVAAAAVGWKLDTTIIFPENHLLQRLF-------TPSLAQRYEQLYQQNGVKFVKGA 196
           IGME A     + +D TI+      L R         +  +A++Y++L    GVK + G 
Sbjct: 183 IGMEFAYVLKNYGVDVTIV----EFLDRALPNEDAEVSKEIAKQYKKL----GVKILTGT 234

Query: 197 SIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQ 251
            +++++         V  +DG    ++AD ++  IG  P V  +  E+ G+  +  G I 
Sbjct: 235 KVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIA 294

Query: 252 VDGQFRTRMPGIFAIGDVAA 271
           +D   RT +P I+AIGDV A
Sbjct: 295 IDDYMRTNVPHIYAIGDVTA 314

Length = 466

>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional

 Score = 73.9 bits (181), Expect = 4e-14
 Identities = 42/204 (20%), Positives = 85/204 (41%), Gaps = 15/204 (7%)

Query: 67  DPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADAL 126
           D VT +      L  + G++++  ++++A G      P       P V        +D  
Sbjct: 183 DEVTIVSAGVSQL--DDGQVIEGKNILIAVGNK----PI-----FPDVKGKEFTISSDDF 231

Query: 127 ISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ 186
              +++AK++ + G GYI +E+         ++  IF   + L R F  ++    E   +
Sbjct: 232 FK-IKEAKRIGIAGSGYIAVELINVVNRLGAESY-IFARGNRLLRKFDETIINELENDMK 289

Query: 187 QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLN-- 244
           +N +  +  A+++ +E   +  +     +       D ++  +G  P         LN  
Sbjct: 290 KNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIK 349

Query: 245 SSVGGIQVDGQFRTRMPGIFAIGD 268
           +  G I+VD   RT +  I+A+GD
Sbjct: 350 TPKGYIKVDDNQRTSVKHIYAVGD 373

Length = 561

>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase; Provisional

 Score = 70.2 bits (173), Expect = 5e-13
 Identities = 47/162 (29%), Positives = 79/162 (48%), Gaps = 16/162 (9%)

Query: 120 VADADALISSLEKAKKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRL---FT 174
           + D+D+++S     + +++ G G IG E A+  AA+G K   T+I   + LL  L    +
Sbjct: 162 IYDSDSILSLDHLPRSLIIYGAGVIGCEYASIFAALGVK--VTLINTRDRLLSFLDDEIS 219

Query: 175 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 234
            +L+         +GV       ++ +E G DG +  V L+ G  I AD ++   G    
Sbjct: 220 DALSYHLRD----SGVTIRHNEEVEKVEGGDDGVI--VHLKSGKKIKADCLLYANGRTGN 273

Query: 235 VSPF--ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFP 273
                 E  GL   S G ++V+  ++T +P I+A+GDV  FP
Sbjct: 274 TDGLNLENAGLEADSRGQLKVNENYQTAVPHIYAVGDVIGFP 315

Length = 461

>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated

 Score = 69.4 bits (171), Expect = 7e-13
 Identities = 55/199 (27%), Positives = 100/199 (50%), Gaps = 34/199 (17%)

Query: 91  SLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYI 144
           ++++ATG   SR P      +PGV     +   D L++S     L+K  K + V+GGG I
Sbjct: 133 NIVIATG---SRVPP-----IPGV----WLILGDRLLTSDDAFELDKLPKSLAVIGGGVI 180

Query: 145 GMEVAAA--AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE 202
           G+E+  A   +G  +  T+    + +L  L  P ++++ +++  +   K   GA + ++E
Sbjct: 181 GLELGQALSRLG--VKVTVFERGDRIL-PLEDPEVSKQAQKILSKE-FKIKLGAKVTSVE 236

Query: 203 AGSDGRVAAVKLEDGS-TIDADTIVIGIGAKPTVSPFERVGL-NSSV-----GGIQVDGQ 255
              D +V  ++    + TI+AD +++  G +P     + +GL N+ +     G   VD  
Sbjct: 237 KSGDEKVEELEKGGKTETIEADYVLVATGRRPNT---DGLGLENTGIELDERGRPVVDEH 293

Query: 256 FRTRMPGIFAIGDVAAFPL 274
            +T +PGI+A GDV   P 
Sbjct: 294 TQTSVPGIYAAGDVNGKPP 312

Length = 460

>gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase; Provisional

 Score = 69.0 bits (169), Expect = 1e-12
 Identities = 53/187 (28%), Positives = 95/187 (50%), Gaps = 23/187 (12%)

Query: 91  SLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAA 150
           ++++ TG  ++  P      +PG+   + V D+  + S     +++ ++GGG IG+E A 
Sbjct: 121 TIVINTGAVSNVLP------IPGLADSKHVYDSTGIQSLETLPERLGIIGGGNIGLEFAG 174

Query: 151 --AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR 208
               +G K+  T++   + +L R   PS+A   +Q  +++G+ F+  A    ++   DG 
Sbjct: 175 LYNKLGSKV--TVLDAASTILPR-EEPSVAALAKQYMEEDGITFLLNAHTTEVKN--DGD 229

Query: 209 VAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL-NSSV-----GGIQVDGQFRTRMPG 262
              V  ED  T   D ++   G KP   P   +GL N+ +     G I+VD   +T +PG
Sbjct: 230 QVLVVTEDE-TYRFDALLYATGRKPNTEP---LGLENTDIELTERGAIKVDDYCQTSVPG 285

Query: 263 IFAIGDV 269
           +FA+GDV
Sbjct: 286 VFAVGDV 292

Length = 438

>gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant

 Score = 67.9 bits (166), Expect = 2e-12
 Identities = 41/139 (29%), Positives = 68/139 (48%), Gaps = 5/139 (3%)

Query: 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 193
           K +++ GGGYI +E A    G  + TT+I+    +L+  F   + +      ++ G++ +
Sbjct: 167 KSILIAGGGYIAVEFAGIFRGLGVQTTLIYRGKEILRG-FDDDMRRGLAAALEERGIRIL 225

Query: 194 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS--PFERVGLN-SSVGGI 250
              SI ++    DGR+ A  L     I AD ++   G  P  +    E  G+  + +G I
Sbjct: 226 PEDSITSISKDDDGRLKAT-LSKHEEIVADVVLFATGRSPNTNGLGLEAAGVRLNDLGAI 284

Query: 251 QVDGQFRTRMPGIFAIGDV 269
            VD   RT  P I+A+GDV
Sbjct: 285 AVDEYSRTSTPSIYAVGDV 303

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria [Energy metabolism, Electron transport]. Length = 446

>gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small subunit; Provisional

 Score = 67.6 bits (166), Expect = 4e-12
 Identities = 56/222 (25%), Positives = 92/222 (41%), Gaps = 42/222 (18%)

Query: 108 GGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAV--GWKLDTTII--F 163
            G L  V ++R V + +         K+VVV+GGG   M+ A  A   G + + TI+   
Sbjct: 246 AGVLDAVDFLRAVGEGEPPFLG----KRVVVIGGGNTAMDAARTARRLGAE-EVTIVYRR 300

Query: 164 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA--------VKLE 215
               +      P+  +  E+   + GV+     +   +E   +G               E
Sbjct: 301 TREDM------PAHDEEIEEA-LREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDE 353

Query: 216 DG---------STIDADTIVIGIGAKPTVSPFERV-GLNSSVGGIQVDGQFR-TRMPGIF 264
           DG          T++AD +V+ IG     +  E V G+    G +QVD  F  T  PG+F
Sbjct: 354 DGRPSPVTGEEETLEADLVVLAIGQDIDSAGLESVPGVEVGRGVVQVDPNFMMTGRPGVF 413

Query: 265 AIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH 306
           A GD+   P     RT     + H +++A++ I A L  + +
Sbjct: 414 AGGDMVPGP-----RTVTTA-IGHGKKAARN-IDAFLGGEPY 448

Length = 564

>gnl|CDD|200098 TIGR01423, trypano_reduc, trypanothione-disulfide reductase

 Score = 66.5 bits (162), Expect = 7e-12
 Identities = 44/147 (29%), Positives = 72/147 (48%), Gaps = 12/147 (8%)

Query: 131 EKAKKVVVVGGGYIGMEVAA-----AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY 185
           E  ++V+ VGGG+I +E A         G K+        N+++ R F  +L +   +  
Sbjct: 185 EPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCY---RNNMILRGFDSTLRKELTKQL 241

Query: 186 QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE--RVGL 243
           + NG+  +   +   +   +DG    V  E G T+D D +++ IG  P     +  +VG+
Sbjct: 242 RANGINIMTNENPAKVTLNADGS-KHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGV 300

Query: 244 N-SSVGGIQVDGQFRTRMPGIFAIGDV 269
             +  G IQVD   RT +P I+AIGDV
Sbjct: 301 ELTKKGAIQVDEFSRTNVPNIYAIGDV 327

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. Length = 486

>gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated

 Score = 66.1 bits (162), Expect = 9e-12
 Identities = 53/191 (27%), Positives = 85/191 (44%), Gaps = 21/191 (10%)

Query: 93  IVATGCTASRFPEKIGGYLPGVHY-IRDVADADALISSLEKAKKVVVVGGGYIGMEVAAA 151
           I+ATG            +LPGV +  + + D    ++  E  KK+ V+G G IG+E+ + 
Sbjct: 150 IIATGSEPR--------HLPGVPFDNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSV 201

Query: 152 AVGWK---LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR 208
              W+    + TI+      L       +A+   + + + G+    G  I  ++ G  G 
Sbjct: 202 ---WRRLGAEVTILEALPAFLA-AADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGV 257

Query: 209 VAAVKLEDGS--TIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFRTRMPGI 263
             A    DG   T++ D +++ IG  P       E VGL     G I VD   RT +P +
Sbjct: 258 SVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCRTNVPNV 317

Query: 264 FAIGDVAAFPL 274
           +AIGDV   P+
Sbjct: 318 YAIGDVVRGPM 328

Length = 475

>gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional

 Score = 65.2 bits (160), Expect = 2e-11
 Identities = 59/213 (27%), Positives = 89/213 (41%), Gaps = 40/213 (18%)

Query: 88  KYGSLIVATGCTASRFPEKIGGYLPGVH----YIRDVADADALISSLEKAKKVVVVGGGY 143
            Y ++ + TG    RF    G  L GV+    ++  V  A A    L   K+VVV+GGG 
Sbjct: 225 GYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVAD-YDLPVGKRVVVIGGGN 283

Query: 144 IGMEVAAAAVGWKL---DTTIIFPENHLLQRLFTPSLAQRYEQLY-QQNGVKFVKGASIK 199
             M+ A  A   +L     TI++      +R      A   E  + ++ GV+F   A+  
Sbjct: 284 TAMDAARTAK--RLGAESVTIVY------RRGREEMPASEEEVEHAKEEGVEFEWLAAPV 335

Query: 200 NLEAGSDGRVAAVKLE-----------------DGS--TIDADTIVIGIGAKP---TVSP 237
            +  G +GRV  V+                   +GS  T+ AD ++  IG  P    +S 
Sbjct: 336 EIL-GDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILST 394

Query: 238 FERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVA 270
              + LN     I  D   RT +PG+FA GD+ 
Sbjct: 395 TPGLELNRWGTIIADDETGRTSLPGVFAGGDIV 427

Length = 457

>gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional

 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 49/182 (26%), Positives = 79/182 (43%), Gaps = 15/182 (8%)

Query: 92  LIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK-KVVVVGGGYIGMEVAA 150
           +++ATG   S  PE +    PG       +D    I SL K   K ++VG  YIG+E A 
Sbjct: 148 ILIATGGRPS-IPEDV----PGAKEYSITSDD---IFSLSKDPGKTLIVGASYIGLETAG 199

Query: 151 AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA 210
                  D T+      +  R F    +++  +  ++ G  F++G    N+E   D    
Sbjct: 200 FLNELGFDVTVAV--RSIPLRGFDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDK--I 255

Query: 211 AVKLEDGSTIDADTIVIGIGAKPTVS--PFERVGLNSSVGGIQVDGQFRTRMPGIFAIGD 268
            V   DG+T   DT++   G KP +       +G++ +     +     T +P IFA+GD
Sbjct: 256 KVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPNDCTNIPNIFAVGD 315

Query: 269 VA 270
           V 
Sbjct: 316 VV 317

Length = 499

>gnl|CDD|233412 TIGR01438, TGR, thioredoxin and glutathione reductase selenoprotein

 Score = 60.6 bits (147), Expect = 5e-10
 Identities = 48/184 (26%), Positives = 79/184 (42%), Gaps = 15/184 (8%)

Query: 92  LIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAA 151
            ++ATG    R+P   G     +        +D L S      K +VVG  Y+ +E A  
Sbjct: 147 FLIATGERP-RYPGIPGAKELCI-------TSDDLFSLPYCPGKTLVVGASYVALECAGF 198

Query: 152 AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA-GSDGRVA 210
             G  LD T++     +L R F    A +  +  +++GVKF +      +E   +   V 
Sbjct: 199 LAGIGLDVTVMV--RSILLRGFDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVLVE 256

Query: 211 AVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGL--NSSVGGIQVDGQFRTRMPGIFAI 266
                +G   + DT+++ IG          E VG+  N   G I  D + +T +P I+A+
Sbjct: 257 FTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEEQTNVPYIYAV 316

Query: 267 GDVA 270
           GD+ 
Sbjct: 317 GDIL 320

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. Length = 484

>gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide oxidoreductase family protein

 Score = 60.4 bits (147), Expect = 5e-10
 Identities = 56/229 (24%), Positives = 88/229 (38%), Gaps = 34/229 (14%)

Query: 64  IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT----------ASRFPEK-IGGYLP 112
                 T ID +++ ++  +   L Y  L +  G T              P K I  +L 
Sbjct: 71  FVIAEATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLA 130

Query: 113 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVA-AAAVGWK----LDTTIIFPENH 167
               + + ADA          K++ VVGGG  G+E+A A               +     
Sbjct: 131 RWEALLESADAP------PGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAGAS 184

Query: 168 LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 227
           LL   F   + +   +L  + G++  +GA +     G DG +    L DG T+ AD I+ 
Sbjct: 185 LLPG-FPAKVRRLVLRLLARRGIEVHEGAPV---TRGPDGALI---LADGRTLPADAILW 237

Query: 228 GIGAKPTVSP-FERVGLN-SSVGGIQVDGQFRTR-MPGIFAIGDVAAFP 273
             GA+    P     GL     G ++VD   ++   P +FA GD A   
Sbjct: 238 ATGARA--PPWLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVIT 284

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. Length = 364

>gnl|CDD|237197 PRK12770, PRK12770, putative glutamate synthase subunit beta; Provisional

 Score = 60.0 bits (146), Expect = 5e-10
 Identities = 67/221 (30%), Positives = 93/221 (42%), Gaps = 41/221 (18%)

Query: 88  KYGSLIVATGCTASRFPEKIGGYLPGVH----YIRDVADADALISSLEKA-----KKVVV 138
           KY ++++ATG   SR     G  LPGV+    Y+  +  A       EK      KKVVV
Sbjct: 118 KYDAVLIATGTWKSRKLGIPGEDLPGVYSALEYLFRIRAAKLGYLPWEKVPPVEGKKVVV 177

Query: 139 VGGGYIGMEVA-------AAAVGWKLDTTI------IFPENHLLQR------LFTPSLAQ 179
           VG G   ++ A       A  V      TI       +    L+ R      L TP    
Sbjct: 178 VGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPAGKYEIERLIARGVEFLELVTP---- 233

Query: 180 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST--IDADTIVIGIGAKPTVSP 237
              ++  +  V+ V+ A ++  E    GR   V +  GS   ++ADT+V  IG  PT  P
Sbjct: 234 --VRIIGEGRVEGVELAKMRLGEPDESGRPRPVPIP-GSEFVLEADTVVFAIGEIPT-PP 289

Query: 238 FERVGL---NSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 275
           F +  L    +  G I VD +  T   G+FA GDV   P K
Sbjct: 290 FAKECLGIELNRKGEIVVDEKHMTSREGVFAAGDVVTGPSK 330

Length = 352

>gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed

 Score = 59.2 bits (144), Expect = 1e-09
 Identities = 61/235 (25%), Positives = 100/235 (42%), Gaps = 34/235 (14%)

Query: 78  TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVV 137
           TL T  G+ +    +++A G +    P  I       H    +     L  SL      V
Sbjct: 118 TLRTGDGEEITADQVVIAAG-SRPVIPPVIADSGVRYHTSDTIMRLPELPESL------V 170

Query: 138 VVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-------FTPSLAQRYEQLYQQNGV 190
           +VGGG+I  E A       +  T++     LL+ L       FT   ++R++    +N  
Sbjct: 171 IVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLDDDISERFTELASKRWDVRLGRN-- 228

Query: 191 KFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSSVG 248
             V G S        DG    ++L+DGST++AD +++  G  P          G++    
Sbjct: 229 --VVGVS-------QDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDED 279

Query: 249 G-IQVDGQFRTRMPGIFAIGDVAA-FPLK-MYDRTAR-VEH---VDHARQSAQHC 296
           G + VD   RT   G+FA+GDV++ + LK + +  AR V+H         ++ H 
Sbjct: 280 GRVVVDEYQRTSAEGVFALGDVSSPYQLKHVANHEARVVQHNLLHPDDLIASDHR 334

Length = 451

>gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase

 Score = 57.3 bits (139), Expect = 4e-09
 Identities = 60/231 (25%), Positives = 99/231 (42%), Gaps = 36/231 (15%)

Query: 60  GIEMIYQDPVTSIDIEKQT--LITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP----- 112
           G E+IY++ V  +D   +   + T  GK     ++I+ATG  AS    K+G  +P     
Sbjct: 70  GAEIIYEE-VIKVDKSGRPFKVYTGDGKEYTAKAVIIATG--AS--ARKLG--IPGEDEF 122

Query: 113 ---GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 169
              GV Y    A  D       K K+V VVGGG   +E A          T++    H  
Sbjct: 123 WGRGVSY---CATCDG---PFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLV----HRR 172

Query: 170 QRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-----STIDADT 224
            +     +    ++L +   ++F+  +++K  E   D +V  VK+++        ++ D 
Sbjct: 173 DKFRAEKILL--DRLKKNPKIEFLWNSTVK--EIVGDNKVEGVKIKNTVTGEEEELEVDG 228

Query: 225 IVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 275
           + I IG +P     + +      G I  D   RT +PG+FA GDV     +
Sbjct: 229 VFIAIGHEPNTELLKGLLELDENGYIVTDEGMRTSVPGVFAAGDVRDKGYR 279

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070) [Energy metabolism, Electron transport]. Length = 299

>gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric

 Score = 57.6 bits (139), Expect = 5e-09
 Identities = 45/219 (20%), Positives = 79/219 (36%), Gaps = 49/219 (22%)

Query: 88  KYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALI--------------SSLEKA 133
           +Y ++ + TG    +        +PG       +  D L               + +   
Sbjct: 218 QYDAVFIGTGAGLPKL-----MNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAG 272

Query: 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ--QNGVK 191
           K VVV+GGG   ++ A  A+    +   ++       R     +  R E++    + GVK
Sbjct: 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLY-------RRTREDMTARVEEIAHAEEEGVK 325

Query: 192 F----------------VKGASIKNLEAG----SDGRVAAVKLEDGSTIDADTIVIGIGA 231
           F                V+    + ++      S  R      +    ++AD +++ IG 
Sbjct: 326 FHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGN 385

Query: 232 KPTVSPFERVGLNSSV-GGIQVDGQFRTRMPGIFAIGDV 269
                  E   L +S  G I VD   RT +PG+FA GD+
Sbjct: 386 GSNPIMAETTRLKTSERGTIVVDEDQRTSIPGVFAGGDI 424

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH [Amino acid biosynthesis, Glutamate family]. Length = 449

>gnl|CDD|180409 PRK06115, PRK06115, dihydrolipoamide dehydrogenase; Reviewed

 Score = 57.2 bits (138), Expect = 7e-09
 Identities = 49/174 (28%), Positives = 84/174 (48%), Gaps = 15/174 (8%)

Query: 111 LPGVHYI-RDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 169
           LPGV    + + D+   +S  E  K +VV+G G IG+E+ +         T++      L
Sbjct: 151 LPGVTIDNQRIIDSTGALSLPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVV----EYL 206

Query: 170 QRLFTPSL----AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDA 222
            R+  P      A+  ++   + G+KF  G+ +    AG+DG    ++   G    T+ A
Sbjct: 207 DRI-CPGTDTETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQA 265

Query: 223 DTIVIGIGAKPTVS--PFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPL 274
           D +++ IG +P       E VGL +   G+  +   RT +PG++ IGDV + P+
Sbjct: 266 DYVLVAIGRRPYTQGLGLETVGLETDKRGMLANDHHRTSVPGVWVIGDVTSGPM 319

Length = 466

>gnl|CDD|180743 PRK06912, acoL, dihydrolipoamide dehydrogenase; Validated

 Score = 57.0 bits (138), Expect = 7e-09
 Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 7/146 (4%)

Query: 129 SLEK-AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ 187
           SL      +++VGGG IG E A+         TI+     LL       +A    +  + 
Sbjct: 165 SLPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGE-DEDIAHILREKLEN 223

Query: 188 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIGAKPTVSP--FERVGLN 244
           +GVK   GA++K L   S  + A  + E     ++A+ +++ +G KP V     E+ G+ 
Sbjct: 224 DGVKIFTGAALKGLN--SYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQ 281

Query: 245 SSVGGIQVDGQFRTRMPGIFAIGDVA 270
            S  GI V+   +T +P I+A GDV 
Sbjct: 282 FSNKGISVNEHMQTNVPHIYACGDVI 307

Length = 458

>gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase

 Score = 57.1 bits (138), Expect = 7e-09
 Identities = 54/202 (26%), Positives = 91/202 (45%), Gaps = 15/202 (7%)

Query: 78  TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVV 137
           TL T  G+ +    +++A G +    P  I     GV Y  +    + ++   E  + +V
Sbjct: 121 TLRTGDGEEITGDQIVIAAG-SRPYIPPAIAD--SGVRYHTN----EDIMRLPELPESLV 173

Query: 138 VVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGAS 197
           +VGGGYI  E A          TI+     LL+ L    ++ R+ ++ ++   K+     
Sbjct: 174 IVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHL-DEDISDRFTEIAKK---KWDIRLG 229

Query: 198 IKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSSVGG-IQVDG 254
                   DG    + L+DGST+ AD +++  G  P       E  G+     G I+VD 
Sbjct: 230 RNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDE 289

Query: 255 QFRTRMPGIFAIGDVAA-FPLK 275
             RT   G++A+GDV++ + LK
Sbjct: 290 YGRTSARGVWALGDVSSPYQLK 311

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. Length = 452

>gnl|CDD|181196 PRK08010, PRK08010, pyridine nucleotide-disulfide oxidoreductase; Provisional

 Score = 56.6 bits (136), Expect = 1e-08
 Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 7/162 (4%)

Query: 111 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 170
           +PG+     V D+  L++  E    + ++GGGYIG+E A+    +    TI+   +  L 
Sbjct: 136 IPGITTTPGVYDSTGLLNLKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLP 195

Query: 171 RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 230
           R     +A     + +  GV  +  A ++ + +  + +V  V  E       D ++I  G
Sbjct: 196 RE-DRDIADNIATILRDQGVDIILNAHVERI-SHHENQV-QVHSEHAQLA-VDALLIASG 251

Query: 231 AKPTVSPFERVGLNSSV---GGIQVDGQFRTRMPGIFAIGDV 269
            +P  +         +V   G I VD    T    I+A+GDV
Sbjct: 252 RQPATASLHPENAGIAVNERGAIVVDKYLHTTADNIWAMGDV 293

Length = 441

>gnl|CDD|234119 TIGR03140, AhpF, alkyl hydroperoxide reductase subunit F

 Score = 55.1 bits (133), Expect = 4e-08
 Identities = 63/228 (27%), Positives = 100/228 (43%), Gaps = 44/228 (19%)

Query: 69  VTSIDIEKQ----TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG-VHYI-RDVAD 122
             +  IE +     +   SG++LK  S+IVATG   +R+  K+G  +PG   YI + VA 
Sbjct: 288 QRAKKIETEDGLIVVTLESGEVLKAKSVIVATG---ARW-RKLG--VPGEKEYIGKGVAY 341

Query: 123 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 182
                    K K V V+GGG  G+E A       +D   I     +L+  F   L  + +
Sbjct: 342 CPHCDGPFFKGKDVAVIGGGNSGIEAA-------IDLAGIVRHVTVLE--FADEL--KAD 390

Query: 183 QLYQQNGVKFVKGASIKNLE----------AGSDGRVAAVKLEDGST-----IDADTIVI 227
           ++ Q       K  S+ N++           G   +V  ++ +D ++     +D D + +
Sbjct: 391 KVLQD------KLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFV 444

Query: 228 GIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 275
            IG  P     +     +  G I +D + RT +PGIFA GDV   P K
Sbjct: 445 QIGLVPNTEWLKDAVELNRRGEIVIDERGRTSVPGIFAAGDVTTVPYK 492

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions]. Length = 515

>gnl|CDD|215281 PLN02507, PLN02507, glutathione reductase

 Score = 54.4 bits (131), Expect = 5e-08
 Identities = 54/194 (27%), Positives = 86/194 (44%), Gaps = 23/194 (11%)

Query: 84  GKLLKYGS--LIVATGCTASRFPEKIGGYLPGVHYIRDVA-DADALISSLEKAKKVVVVG 140
           G  L+Y +  +++ATG  A R        +PG    +++A  +D  +S  E  K+ VV+G
Sbjct: 161 GTKLRYTAKHILIATGSRAQRPN------IPG----KELAITSDEALSLEELPKRAVVLG 210

Query: 141 GGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 198
           GGYI +E A+    +G  +D   +F    L  R F   +     +  +  G+      ++
Sbjct: 211 GGYIAVEFASIWRGMGATVD---LFFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTNL 267

Query: 199 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS--PFERVGLN-SSVGGIQVDGQ 255
             L     G    V  + G    AD ++   G  P       E VG+     G ++VD  
Sbjct: 268 TQLTKTEGG--IKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEY 325

Query: 256 FRTRMPGIFAIGDV 269
            RT +P I+AIGDV
Sbjct: 326 SRTNIPSIWAIGDV 339

Length = 499

>gnl|CDD|215301 PLN02546, PLN02546, glutathione reductase

 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 14/189 (7%)

Query: 84  GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGY 143
           GKL    ++++A G      P+     +PG+ +     D+DA +    K +K+ +VGGGY
Sbjct: 212 GKLYTARNILIAVGGRPF-IPD-----IPGIEH---AIDSDAALDLPSKPEKIAIVGGGY 262

Query: 144 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 203
           I +E A    G K D  +   +  +L R F   +     +     G++F    S + +  
Sbjct: 263 IALEFAGIFNGLKSDVHVFIRQKKVL-RGFDEEVRDFVAEQMSLRGIEFHTEESPQAIIK 321

Query: 204 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLN-SSVGGIQVDGQFRTRM 260
            +DG + ++K   G+      ++   G KP       E VG+     G I+VD   RT +
Sbjct: 322 SADGSL-SLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRTSV 380

Query: 261 PGIFAIGDV 269
           P I+A+GDV
Sbjct: 381 PSIWAVGDV 389

Length = 558

>gnl|CDD|185553 PTZ00318, PTZ00318, NADH dehydrogenase-like protein; Provisional

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 64/267 (23%), Positives = 105/267 (39%), Gaps = 63/267 (23%)

Query: 65  YQDPVTSIDIE-KQTLITNSGK---------LLKYGSLIVATGCTASRFPEKIGGYLPGV 114
            +  V  +D E K+       K          + Y  L+VA G   + F   I G     
Sbjct: 80  LRAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTF--NIPGVEERA 137

Query: 115 HYIRDVADADAL--------------ISSLEKAKK---VVVVGGGYIGMEVAAA-AVGWK 156
            ++++V  A  +               +S+E+ K+    VVVGGG  G+E AA  A  ++
Sbjct: 138 FFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFR 197

Query: 157 LDTTIIFPENHLLQRL--------------FTPSLAQRYEQL-YQQNGVKFVKGASIKNL 201
            D   + PE  L++                F  +L ++Y Q   ++ GV      ++K +
Sbjct: 198 DDVRNLNPE--LVEECKVTVLEAGSEVLGSFDQAL-RKYGQRRLRRLGVDIRTKTAVKEV 254

Query: 202 EAGSDGRVAAVKLEDGSTIDADTIV--IGIGAKPTV--SPFERVGLNSSVGGIQVDGQFR 257
                     V L+DG  I    +V   G+G  P       ++    +S G I VD   R
Sbjct: 255 LDKE------VVLKDGEVIPTGLVVWSTGVGPGPLTKQLKVDK----TSRGRISVDDHLR 304

Query: 258 TR-MPGIFAIGDVAAFPLKMYDRTARV 283
            + +P +FA+GD AA   +     A+V
Sbjct: 305 VKPIPNVFALGDCAANEERPLPTLAQV 331

Length = 424

>gnl|CDD|237790 PRK14694, PRK14694, putative mercuric reductase; Provisional

 Score = 51.9 bits (124), Expect = 3e-07
 Identities = 32/146 (21%), Positives = 70/146 (47%), Gaps = 7/146 (4%)

Query: 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 193
           ++++V+G   + +E+A A        T++     L Q    P++ +  E  +++ G++ +
Sbjct: 179 ERLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQE--DPAVGEAIEAAFRREGIEVL 236

Query: 194 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQ 251
           K      ++   +GR   ++   G T+ A+ +++  G  P       E +G+ +  G I+
Sbjct: 237 KQTQASEVD--YNGREFILETNAG-TLRAEQLLVATGRTPNTENLNLESIGVETERGAIR 293

Query: 252 VDGQFRTRMPGIFAIGDVAAFPLKMY 277
           +D   +T + GI+A GD    P  +Y
Sbjct: 294 IDEHLQTTVSGIYAAGDCTDQPQFVY 319

Length = 468

>gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed

 Score = 51.7 bits (125), Expect = 3e-07
 Identities = 54/220 (24%), Positives = 82/220 (37%), Gaps = 41/220 (18%)

Query: 85  KLLK-YGSLIVATGCTASR---FPEKIGGYLPGVHY--------IRDVADADALISSLEK 132
           +LL  Y ++ + TG    R    P   G  L GVH+         R V   +       K
Sbjct: 224 ELLAEYDAVFLGTGAYKPRDLGIP---GRDLDGVHFAMDFLIQNTRRVLGDETEPFISAK 280

Query: 133 AKKVVVVGGGYIGMEVAAAAV--GWK----LDTTIIFPENHLLQRLFTPSLAQRYEQLY- 185
            K VVV+GGG  GM+    A+  G K     D   + P     +    P    + E    
Sbjct: 281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRRN-KNNPWPYWPMKLEVSNA 339

Query: 186 QQNGVKFVKGASIKNLEAGSDGRVAAVKLED------------GS--TIDADTIVIGIGA 231
            + GV+       K  E G +G+V  VK+              GS   + AD +++ +G 
Sbjct: 340 HEEGVEREFNVQTKEFE-GENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGF 398

Query: 232 KPTVSP-FERVGLNSSVGG--IQVDGQFRTRMPGIFAIGD 268
               +    + G+     G     D  ++T  P +FA GD
Sbjct: 399 TGPEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVFAAGD 438

Length = 471

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 16/124 (12%)

Query: 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH------------LLQRLFTPSLAQRY- 181
            VV++GGG  G+  A       L   +I  E              LL+      LA    
Sbjct: 1   DVVIIGGGPAGLAAAIRLARLGLKVALIEREGGTCYNRGCLPKKLLLEVAEGLELAIGLA 60

Query: 182 --EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE 239
             E++Y++ GV+ + G  + +++ G    V    +E G  I  D ++I  GA+P +    
Sbjct: 61  LPEEVYKEFGVEVLLGTEVVDIDRGE-KTVVLKDVETGREITYDKLIIATGARPRIPGIP 119

Query: 240 RVGL 243
            V +
Sbjct: 120 GVEV 123

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 22/153 (14%)

Query: 134 KKVVVVGGGYIGMEVAAAA--VGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK 191
           K VVVVGGG   M+ A AA  V      T+++       +   P+  + YE    ++GV+
Sbjct: 669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT----KQEMPAWREEYE-EALEDGVE 723

Query: 192 FVKGASIKNLEA--------------GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP 237
           F +  + ++ +A                 GR   V+  +  T++ADT++  IG +     
Sbjct: 724 FKELLNPESFDADGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTEL 783

Query: 238 FERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDV 269
            +  G+     G   VD    T +  ++ IGDV
Sbjct: 784 LKANGIPLDKKGWPVVDANGETSLTNVYMIGDV 816

Length = 1019

>gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase small subunit; Provisional

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 34/187 (18%)

Query: 105 EKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDT-TIIF 163
           E++ G + G+ ++R+VA   AL       KKVVV+GGG   ++ A  A+    ++ TI++
Sbjct: 299 EELPGVISGIDFLRNVALGTAL----HPGKKVVVIGGGNTAIDAARTALRLGAESVTILY 354

Query: 164 -------PENHL-----------LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS 205
                  P N             L+ L  P   +R E   +   +K  +G      E   
Sbjct: 355 RRTREEMPANRAEIEEALAEGVSLRELAAPVSIERSEGGLELTAIKMQQG------EPDE 408

Query: 206 DGRVAAVKLEDGS--TIDADTIVIGIGAKPTVSPFERVGLNSSVGG-IQVDGQ-FRTRMP 261
            GR   V +E GS  T+ ADT++  IG +      E  G+ +S  G ++VD +  +T + 
Sbjct: 409 SGRRRPVPVE-GSEFTLQADTVISAIGQQVDPPIAEAAGIGTSRNGTVKVDPETLQTSVA 467

Query: 262 GIFAIGD 268
           G+FA GD
Sbjct: 468 GVFAGGD 474

Length = 652

>gnl|CDD|236112 PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed

 Score = 47.5 bits (114), Expect = 7e-06
 Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 15/148 (10%)

Query: 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPS----LAQRYEQLYQQNGV 190
            ++VVG G  G E A+A     +  T++   + +L     P      A+  E+++ + G+
Sbjct: 179 HLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVL-----PGEDADAAEVLEEVFARRGM 233

Query: 191 KFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSSVG 248
             +K +  +++E   DG V  V L DG T++    ++ +G+ P  +    E  G+  +  
Sbjct: 234 TVLKRSRAESVERTGDGVV--VTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPS 291

Query: 249 G-IQVDGQFRTRMPGIFAIGDVAA-FPL 274
           G I VD   RT +PGI+A GD     PL
Sbjct: 292 GHITVDRVSRTSVPGIYAAGDCTGVLPL 319

Length = 466

>gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 34/163 (20%)

Query: 133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY--QQNGV 190
            KKV VVGGG   M+ A  A     +   I      + R     +  R E++   ++ G+
Sbjct: 570 GKKVAVVGGGNTAMDSARTAKRLGAERVTI------VYRRSEEEMPARLEEVKHAKEEGI 623

Query: 191 KF----------------VKGASIKNLEAG---SDGRVAAVKLEDGS--TIDADTIVIGI 229
           +F                VK   ++ +E G   + GR   V +  GS  T+D D +++ +
Sbjct: 624 EFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIP-GSTFTVDVDLVIVSV 682

Query: 230 GAKPT---VSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDV 269
           G  P     S    + LN   G I VD + ++ +PGI+A GD+
Sbjct: 683 GVSPNPLVPSSIPGLELNRK-GTIVVDEEMQSSIPGIYAGGDI 724

Length = 752

>gnl|CDD|226160 COG3634, AhpF, Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 54/203 (26%), Positives = 87/203 (42%), Gaps = 26/203 (12%)

Query: 83  SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRD--VADADALISSLEKAKKVVVVG 140
           +G +LK  ++I+ATG   +R+   +   +PG    R+  VA        L K K+V V+G
Sbjct: 308 NGAVLKARTVILATG---ARW-RNMN--VPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIG 361

Query: 141 GGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSL---AQRYEQLYQQNGVKFVKGAS 197
           GG  G+E A       +D   I     LL+  F P L   A   ++L     V  +  A 
Sbjct: 362 GGNSGVEAA-------IDLAGIVEHVTLLE--FAPELKADAVLQDKLRSLPNVTIITNAQ 412

Query: 198 IKNLEAGSDGRVAAVKLEDGST-----IDADTIVIGIGAKPTVSPFERVGLNSSVGGIQV 252
              +  G   +V  ++  D  +     ++ + + + IG  P     +     +  G I V
Sbjct: 413 TTEV-KGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGAVELNRRGEIIV 471

Query: 253 DGQFRTRMPGIFAIGDVAAFPLK 275
           D +  T +PG+FA GD    P K
Sbjct: 472 DARGETNVPGVFAAGDCTTVPYK 494

Length = 520

>gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed

 Score = 44.6 bits (106), Expect = 7e-05
 Identities = 39/153 (25%), Positives = 69/153 (45%), Gaps = 21/153 (13%)

Query: 134 KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK 191
           K+++V+GGG IG+E+      +G ++D   +F +         P+  +   +++ +   K
Sbjct: 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQ-------VIPAADKDIVKVFTKRIKK 227

Query: 192 FVK---GASIKNLEAGSDGRVAAVKLEDGSTIDA----DTIVIGIGAKPTVSPF--ERVG 242
                    +  +EA  DG    V +E           D +++ +G  P       E+ G
Sbjct: 228 QFNIMLETKVTAVEAKEDGIY--VTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAG 285

Query: 243 LN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPL 274
           +     G I+VD Q RT +P IFAIGD+   P+
Sbjct: 286 VEVDERGFIRVDKQCRTNVPHIFAIGDIVGQPM 318

Length = 471

>gnl|CDD|222355 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase

 Score = 43.1 bits (102), Expect = 7e-05
 Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 9/103 (8%)

Query: 65  YQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKI-GGYLPGVHYIRDVA 121
               VT+++ +     +    G+ ++   ++ ATG  +   P    G    GVH +  + 
Sbjct: 101 LSTRVTAVERDGGRFVVRLTDGETVRADYVVDATGAFSVPKPPGFPGADAEGVHLVDVLE 160

Query: 122 DADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP 164
             D       K K V V+GGG+  ++ A   +    D T I  
Sbjct: 161 RID------LKGKTVAVIGGGHTAIDAALNLLDLGKDVTWITR 197

Length = 202

>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 63/258 (24%), Positives = 97/258 (37%), Gaps = 44/258 (17%)

Query: 86  LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRD--------VADADALISSLE-KAKKV 136
           L +Y ++ +ATG    R  +  G    GV +  D        V    A   +   K K+V
Sbjct: 206 LKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRV 265

Query: 137 VVVGGGYIGMEVAAAAV--GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY-QQNGVKFV 193
           VV+GGG   M+ A  A+  G K   T  + E+   +    P+ A + E     + GV+ +
Sbjct: 266 VVIGGGDTAMDCAGTALRLGAK-SVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERL 324

Query: 194 KGASIKNLEAGSDGRVAAVKLED-------------------GST--IDADTIVIGIGAK 232
                K       GRV  VK                      G+     ADT+++ IG +
Sbjct: 325 PFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFE 384

Query: 233 PTVSPF--ERVGLNSSVGG-IQVDGQF-RTRMPGIFAIGDVAAFPLKMYDRTARVEHVDH 288
              +       GL     G I+VD    +T +PG+FA GD              V  +  
Sbjct: 385 GDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVR-----GAAL-VVWAIAE 438

Query: 289 ARQSAQHCIKALLSAQTH 306
            R++A+   K LL  +  
Sbjct: 439 GREAAKAIDKELLLGKAV 456

Length = 457

>gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 49/214 (22%), Positives = 85/214 (39%), Gaps = 37/214 (17%)

Query: 134 KKVVVVGGGYIGMEVAAAAV---GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV 190
           K VVVVGGG   M+ A AA+   G +   T+++       + + P+  +  E    ++GV
Sbjct: 667 KHVVVVGGGNTAMDAARAALRVPGVE-KVTVVYRRT----KRYMPASREELE-EALEDGV 720

Query: 191 KFVKGASIKNLEAG-------------SDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP 237
            F +  S ++ E G             + GR   V   +   + ADT++  +G +     
Sbjct: 721 DFKELLSPESFEDGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDL 780

Query: 238 FERVGLNSSVGG-IQVDGQFR-TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH 295
            ++ G+     G   V+     T +  +F IGD    P  +      VE +   R++A  
Sbjct: 781 LQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGPATI------VEAIADGRKAA-- 832

Query: 296 CIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVW 329
              A+LS +    D    F       E    +V+
Sbjct: 833 --NAILSREGLNSDVDKVF---PINEEVRLAEVY 861

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. Length = 1012

>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 20/114 (17%)

Query: 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTII-------FPENHLLQRLFT-----PSLAQRY 181
           K++V++GGG+ G+  A        D  I             LL  + T       +A   
Sbjct: 4   KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPL 63

Query: 182 EQLYQ-QNGVKFVKGASIK-NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 233
             L +    V+FV+G     + +A        V L D   I  D +V+ +G++ 
Sbjct: 64  RALLRKSGNVQFVQGEVTDIDRDAKK------VTLADLGEISYDYLVVALGSET 111

Length = 405

>gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 39/161 (24%), Positives = 65/161 (40%), Gaps = 34/161 (21%)

Query: 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY--QQNGVK 191
           KKV VVGGG + M+ A  A+    +  I++       R     L  R E+++  ++ GV 
Sbjct: 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVY-------RRSEEELPARVEEVHHAKEEGVI 334

Query: 192 FVKGASIKNLEAGSDGRVAAVKLE-------DGS-------------TIDADTIVIGIGA 231
           F    +   +    +G V  +K         D S              ++ DT+++ +G 
Sbjct: 335 FDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGT 394

Query: 232 KPT---VSPFERVGLNSSVGGIQVDGQF-RTRMPGIFAIGD 268
            P     S  + + +N   G I  D +   T   G+FA GD
Sbjct: 395 SPNPLISSTTKGLKINKR-GCIVADEETGLTSKEGVFAGGD 434

Length = 464

>gnl|CDD|237806 PRK14727, PRK14727, putative mercuric reductase; Provisional

 Score = 40.7 bits (95), Expect = 0.001
 Identities = 44/190 (23%), Positives = 77/190 (40%), Gaps = 17/190 (8%)

Query: 92  LIVATGCTASRFPEKIGGYLPGVHYIRDVA-DADALISSLEKAKKVVVVGGGYIGMEVAA 150
            ++ATG T +  P  I G +   ++    A  +D L +SL       V+G   +  E+A 
Sbjct: 154 CLIATGSTPT-IP-PIPGLMDTPYWTSTEALFSDELPASL------TVIGSSVVAAEIAQ 205

Query: 151 AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA 210
           A    +L + +       L     P L +     +++ G++ +       +E   +G V 
Sbjct: 206 AYA--RLGSRVTILARSTLLFREDPLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFV- 262

Query: 211 AVKLEDGSTIDADTIVIGIG--AKPTVSPFERVGLNSSV-GGIQVDGQFRTRMPGIFAIG 267
            +    G    A+ ++I  G  A       E VG+ +   G I V+    T  P I+A G
Sbjct: 263 -LTTGHGELR-AEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMETSAPDIYAAG 320

Query: 268 DVAAFPLKMY 277
           D +  P  +Y
Sbjct: 321 DCSDLPQFVY 330

Length = 479

>gnl|CDD|234119 TIGR03140, AhpF, alkyl hydroperoxide reductase subunit F

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 25/115 (21%)

Query: 136 VVVVGGGYIGMEVAAAAV-----------------GWKLDTTIIFPENHLLQRLFT-PSL 177
           V+VVGGG  G   AAAA+                 G   DT  I  EN +     T   L
Sbjct: 215 VLVVGGGPAG---AAAAIYAARKGLRTAMVAERIGGQVKDTVGI--ENLISVPYTTGSQL 269

Query: 178 AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 232
           A   E+  +Q  +  ++    K +E  ++  +  V LE G  + A ++++  GA+
Sbjct: 270 AANLEEHIKQYPIDLMENQRAKKIE--TEDGLIVVTLESGEVLKAKSVIVATGAR 322

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions]. Length = 515

>gnl|CDD|234819 PRK00711, PRK00711, D-amino acid dehydrogenase small subunit; Validated

 Score = 39.4 bits (93), Expect = 0.003
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)

Query: 171 RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 230
           +LFT  LA   EQL    GVKF     +  L     GR+  V+   G  I AD  V+ +G
Sbjct: 201 QLFTQRLAAMAEQL----GVKFRFNTPVDGLLV-EGGRITGVQTGGG-VITADAYVVALG 254

Length = 416

>gnl|CDD|237942 PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional

 Score = 39.4 bits (93), Expect = 0.003
 Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 28/133 (21%)

Query: 121 ADADALISSLEKAKK---VVVVGGGYIGMEVAAAAV-----------------GWKLDTT 160
             A A  +    AK    V+VVGGG  G   AAAA+                 G  LDT 
Sbjct: 196 TGAAARAAEELNAKDPYDVLVVGGGPAG---AAAAIYAARKGIRTGIVAERFGGQVLDTM 252

Query: 161 IIFPENHLLQRLFT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST 219
            I  EN +       P LA   E+  ++  V  +       LE  +   +  V+L +G+ 
Sbjct: 253 GI--ENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAAG--LIEVELANGAV 308

Query: 220 IDADTIVIGIGAK 232
           + A T+++  GA+
Sbjct: 309 LKAKTVILATGAR 321

Length = 517

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	414
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	100.0
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	100.0
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	100.0
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	100.0
PRK14989	847	nitrite reductase subunit NirD; Provisional	100.0
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	100.0
PRK13512	438	coenzyme A disulfide reductase; Provisional	100.0
PRK09564	444	coenzyme A disulfide reductase; Reviewed	100.0
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	100.0
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	100.0
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	100.0
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	100.0
PLN02507	499	glutathione reductase	100.0
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	100.0
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	100.0
PRK06370	463	mercuric reductase; Validated	100.0
PRK07846	451	mycothione reductase; Reviewed	100.0
PRK07845	466	flavoprotein disulfide reductase; Reviewed	100.0
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	100.0
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	100.0
PRK06116	450	glutathione reductase; Validated	100.0
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	100.0
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	100.0
PLN02546	558	glutathione reductase	100.0
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	100.0
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	100.0
PRK14694	468	putative mercuric reductase; Provisional	100.0
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	100.0
TIGR02053	463	MerA mercuric reductase. This model represents the	100.0
PTZ00058	561	glutathione reductase; Provisional	100.0
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	100.0
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	100.0
PRK13748	561	putative mercuric reductase; Provisional	100.0
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	100.0
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	100.0
PRK14727	479	putative mercuric reductase; Provisional	100.0
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	100.0
PTZ00153	659	lipoamide dehydrogenase; Provisional	100.0
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	100.0
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	100.0
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	100.0
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	100.0
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	100.0
PTZ00052	499	thioredoxin reductase; Provisional	100.0
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	100.0
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	99.98
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	99.96
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	99.96
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	99.96
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	99.96
PRK10262	321	thioredoxin reductase; Provisional	99.96
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	99.95
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	99.95
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	99.95
PRK12831	464	putative oxidoreductase; Provisional	99.95
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	99.95
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	99.94
PRK12770	352	putative glutamate synthase subunit beta; Provisio	99.93
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	99.93
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	99.93
PRK12814	652	putative NADPH-dependent glutamate synthase small	99.92
PRK12779	944	putative bifunctional glutamate synthase subunit b	99.92
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	99.91
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	99.91
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	99.91
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	99.91
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	99.9
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	99.9
PRK13984	604	putative oxidoreductase; Provisional	99.9
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	99.89
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	99.89
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	99.88
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	99.88
PLN02852	491	ferredoxin-NADP+ reductase	99.86
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	99.85
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	99.84
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	99.82
KOG2755	334	consensus Oxidoreductase [General function predict	99.73
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.69
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	99.59
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	99.55
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	99.52
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	99.5
PRK06567	1028	putative bifunctional glutamate synthase subunit b	99.43
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	99.38
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	99.37
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	99.32
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.19
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	99.17
PF14759	85	Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LX	99.09
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.89
COG2081	408	Predicted flavoproteins [General function predicti	98.85
PTZ00188	506	adrenodoxin reductase; Provisional	98.78
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	98.72
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	98.67
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.62
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	98.61
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.58
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.57
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.56
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	98.55
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.54
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	98.53
PRK06847	375	hypothetical protein; Provisional	98.5
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.5
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.47
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	98.42
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.41
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	98.4
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	98.39
PRK07236	386	hypothetical protein; Provisional	98.38
PRK14989	847	nitrite reductase subunit NirD; Provisional	98.36
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.35
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.34
PRK12770	352	putative glutamate synthase subunit beta; Provisio	98.33
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	98.33
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	98.33
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.33
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	98.32
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.3
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.3
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.29
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.28
PRK06834	488	hypothetical protein; Provisional	98.26
PRK07045	388	putative monooxygenase; Reviewed	98.25
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.25
PLN02463	447	lycopene beta cyclase	98.24
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.23
PRK10262	321	thioredoxin reductase; Provisional	98.22
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.21
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	98.2
PRK08163	396	salicylate hydroxylase; Provisional	98.19
PRK12831	464	putative oxidoreductase; Provisional	98.18
PRK08244	493	hypothetical protein; Provisional	98.17
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.15
PRK07588	391	hypothetical protein; Provisional	98.15
PLN02852	491	ferredoxin-NADP+ reductase	98.14
PRK10157	428	putative oxidoreductase FixC; Provisional	98.14
COG0579	429	Predicted dehydrogenase [General function predicti	98.13
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.13
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	98.12
PRK07190	487	hypothetical protein; Provisional	98.11
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	98.11
PRK06116	450	glutathione reductase; Validated	98.11
PRK05868	372	hypothetical protein; Validated	98.1
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.1
PTZ00188	506	adrenodoxin reductase; Provisional	98.09
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	98.09
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	98.09
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.08
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	98.08
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	98.08
PRK06184	502	hypothetical protein; Provisional	98.07
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	98.07
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.06
PRK09126	392	hypothetical protein; Provisional	98.06
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	98.06
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.05
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.04
PRK09897	534	hypothetical protein; Provisional	98.04
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.02
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.02
PRK08132	547	FAD-dependent oxidoreductase; Provisional	98.01
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	98.01
PRK08013	400	oxidoreductase; Provisional	98.01
PRK06753	373	hypothetical protein; Provisional	98.0
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.0
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	97.99
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	97.99
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	97.99
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	97.98
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	97.98
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	97.98
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	97.98
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.97
PLN02697	529	lycopene epsilon cyclase	97.96
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	97.94
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.94
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	97.93
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	97.93
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	97.92
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	97.92
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	97.91
PRK11728	393	hydroxyglutarate oxidase; Provisional	97.91
PRK06475	400	salicylate hydroxylase; Provisional	97.9
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	97.9
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.89
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	97.85
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.85
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.85
PRK06185	407	hypothetical protein; Provisional	97.85
PRK12814	652	putative NADPH-dependent glutamate synthase small	97.84
PRK10015	429	oxidoreductase; Provisional	97.84
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	97.84
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	97.83
PRK06370	463	mercuric reductase; Validated	97.83
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	97.83
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	97.82
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.82
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	97.82
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	97.81
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	97.81
PRK09897	534	hypothetical protein; Provisional	97.79
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	97.78
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	97.77
PLN02661	357	Putative thiazole synthesis	97.77
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	97.76
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.75
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	97.75
TIGR00275	400	flavoprotein, HI0933 family. The model when search	97.74
PRK06126	545	hypothetical protein; Provisional	97.72
PRK06996	398	hypothetical protein; Provisional	97.7
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	97.7
TIGR02053	463	MerA mercuric reductase. This model represents the	97.69
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	97.68
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	97.68
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	97.68
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	97.65
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	97.65
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	97.64
PLN02546	558	glutathione reductase	97.63
PRK07538	413	hypothetical protein; Provisional	97.62
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	97.62
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	97.61
PRK13984	604	putative oxidoreductase; Provisional	97.61
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.61
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	97.57
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	97.57
PRK13748	561	putative mercuric reductase; Provisional	97.54
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	97.54
PRK06567	1028	putative bifunctional glutamate synthase subunit b	97.54
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	97.52
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	97.51
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	97.51
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	97.51
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	97.51
PRK14694	468	putative mercuric reductase; Provisional	97.51
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	97.5
PLN02507	499	glutathione reductase	97.49
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	97.49
PTZ00058	561	glutathione reductase; Provisional	97.49
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	97.48
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	97.47
PRK11445	351	putative oxidoreductase; Provisional	97.46
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	97.46
PRK08274	466	tricarballylate dehydrogenase; Validated	97.46
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	97.45
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	97.45
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.45
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	97.45
PTZ00383	497	malate:quinone oxidoreductase; Provisional	97.44
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	97.4
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	97.4
PLN02464	627	glycerol-3-phosphate dehydrogenase	97.37
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	97.36
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.35
PRK07804	541	L-aspartate oxidase; Provisional	97.35
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	97.34
PRK14727	479	putative mercuric reductase; Provisional	97.34
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	97.33
PRK07121	492	hypothetical protein; Validated	97.28
PRK08401	466	L-aspartate oxidase; Provisional	97.27
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	97.22
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	97.22
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	97.21
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	97.19
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	97.18
PF14721	133	AIF_C: Apoptosis-inducing factor, mitochondrion-as	97.17
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.14
PLN02985	514	squalene monooxygenase	97.13
PRK13977	576	myosin-cross-reactive antigen; Provisional	97.11
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	97.09
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	97.09
PRK08275	554	putative oxidoreductase; Provisional	97.08
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	97.07
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	97.05
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	97.05
PRK07846	451	mycothione reductase; Reviewed	97.03
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	97.02
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	97.0
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	97.0
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	97.0
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	96.98
PRK08294	634	phenol 2-monooxygenase; Provisional	96.97
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	96.96
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	96.95
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	96.94
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	96.91
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	96.91
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	96.9
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	96.9
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	96.89
PTZ00052	499	thioredoxin reductase; Provisional	96.87
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	96.86
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.84
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	96.83
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	96.83
PRK06175	433	L-aspartate oxidase; Provisional	96.82
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	96.8
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	96.8
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	96.8
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	96.78
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	96.78
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	96.78
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	96.7
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	96.68
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	96.66
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	96.65
PRK13339	497	malate:quinone oxidoreductase; Reviewed	96.6
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	96.54
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	96.52
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	96.49
PRK07395	553	L-aspartate oxidase; Provisional	96.49
KOG2852	380	consensus Possible oxidoreductase [General functio	96.43
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.41
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	96.41
PTZ00153	659	lipoamide dehydrogenase; Provisional	96.4
PRK08071	510	L-aspartate oxidase; Provisional	96.39
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	96.34
PLN02815	594	L-aspartate oxidase	96.32
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	96.28
KOG2755	334	consensus Oxidoreductase [General function predict	96.22
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	96.18
PRK07512	513	L-aspartate oxidase; Provisional	96.17
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	96.17
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	96.16
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	96.13
PRK12842	574	putative succinate dehydrogenase; Reviewed	96.12
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	96.11
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	96.1
COG2081	408	Predicted flavoproteins [General function predicti	96.09
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	96.03
COG2907	447	Predicted NAD/FAD-binding protein [General functio	95.92
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	95.88
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	95.88
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	95.87
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	95.84
PRK12839	572	hypothetical protein; Provisional	95.77
PRK09077	536	L-aspartate oxidase; Provisional	95.77
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	95.66
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.65
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	95.64
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.61
PRK11883	451	protoporphyrinogen oxidase; Reviewed	95.6
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	95.58
PRK07233	434	hypothetical protein; Provisional	95.53
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	95.51
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	95.43
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	95.41
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.4
COG3349	485	Uncharacterized conserved protein [Function unknow	95.39
PTZ00367	567	squalene epoxidase; Provisional	95.38
PLN02268	435	probable polyamine oxidase	95.38
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.34
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	95.3
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	95.27
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	95.21
PRK07208	479	hypothetical protein; Provisional	95.13
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	95.1
PRK05562	223	precorrin-2 dehydrogenase; Provisional	95.09
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	95.02
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	95.0
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	94.98
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	94.96
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	94.93
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	94.91
PRK06719	157	precorrin-2 dehydrogenase; Validated	94.89
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	94.89
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	94.83
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	94.76
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	94.73
PF02852	110	Pyr_redox_dim: Pyridine nucleotide-disulphide oxid	94.7
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	94.67
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	94.66
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	94.64
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	94.59
PRK08275	554	putative oxidoreductase; Provisional	94.49
PLN02576	496	protoporphyrinogen oxidase	94.49
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	94.45
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	94.43
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	94.35
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.3
PRK12416	463	protoporphyrinogen oxidase; Provisional	94.29
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	94.24
PLN02612	567	phytoene desaturase	94.23
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	94.22
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	94.17
PLN03000	881	amine oxidase	94.02
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	94.02
KOG2853	509	consensus Possible oxidoreductase [General functio	93.98
PRK08071	510	L-aspartate oxidase; Provisional	93.93
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	93.93
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	93.92
PRK07804	541	L-aspartate oxidase; Provisional	93.89
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.87
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	93.86
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	93.86
PLN02529	738	lysine-specific histone demethylase 1	93.8
PRK15116	268	sulfur acceptor protein CsdL; Provisional	93.75
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	93.68
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	93.61
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	93.61
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	93.59
PRK09077	536	L-aspartate oxidase; Provisional	93.56
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	93.54
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	93.46
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	93.43
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	93.34
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.21
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.2
PLN02487	569	zeta-carotene desaturase	93.19
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	93.15
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	93.14
PLN02328	808	lysine-specific histone demethylase 1 homolog	93.01
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	92.98
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	92.93
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	92.91
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	92.89
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	92.86
PRK08401	466	L-aspartate oxidase; Provisional	92.83
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	92.83
COG3573	552	Predicted oxidoreductase [General function predict	92.73
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	92.73
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	92.71
PLN02568	539	polyamine oxidase	92.63
PLN02612	567	phytoene desaturase	92.53
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.45
TIGR01082	448	murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a	92.41
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	92.41
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	92.39
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	92.23
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	92.2
PRK05257	494	malate:quinone oxidoreductase; Validated	92.19
PRK07512	513	L-aspartate oxidase; Provisional	92.09
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	92.08
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	92.05
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	92.03
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	91.93
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	91.81
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	91.72
PLN02676	487	polyamine oxidase	91.71
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	91.52
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	91.46
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	91.31
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	91.26
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	91.17
PLN02815	594	L-aspartate oxidase	91.13
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	91.12
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.12
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	91.08
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.96
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	90.94
PRK06847	375	hypothetical protein; Provisional	90.85
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	90.84
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	90.83
PRK04148	134	hypothetical protein; Provisional	90.76
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	90.71
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	90.7
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	90.69
PRK06175	433	L-aspartate oxidase; Provisional	90.61
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	90.61
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	90.54
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	90.53
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	90.51
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	90.42
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	90.4
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	90.14
PRK07395	553	L-aspartate oxidase; Provisional	90.11
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	90.03
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	90.02
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	89.91
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	89.74
PRK06834	488	hypothetical protein; Provisional	89.56
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	89.55
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	89.53
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	89.46
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.43
PRK12842	574	putative succinate dehydrogenase; Reviewed	89.29
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	89.17
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	89.09
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	88.97
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	88.92
COG0569	225	TrkA K+ transport systems, NAD-binding component [	88.79
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	88.76
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	88.74
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	88.64
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	88.59
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	88.46
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	88.36
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	88.33
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	88.31
PLN02487	569	zeta-carotene desaturase	88.27
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	88.24
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	88.2
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	88.07
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	88.03
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	87.93
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	87.8
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	87.65
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	87.64

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=100.00  E-value=2.5e-56  Score=440.87  Aligned_cols=366  Identities=27%  Similarity=0.402  Sum_probs=317.3

Q ss_pred             CCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCCCEEEe
Q 014997            2 ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLIT   81 (414)
Q Consensus         2 ~~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~   81 (414)
                      ++++||||++|+++||+||+||+.++.+......             ..+..+++.+.+|+++.+++|+.+|++++.|.+
T Consensus        27 ~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~-------------~~~~~~~~~~~~i~~~~g~~V~~id~~~~~v~~   93 (396)
T PRK09754         27 FTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQ-------------QVLPANWWQENNVHLHSGVTIKTLGRDTRELVL   93 (396)
T ss_pred             CCCCEEEeCCCCCCCCCCCCCCHHHHCCCCcccc-------------ccCCHHHHHHCCCEEEcCCEEEEEECCCCEEEE
Confidence            4689999999999999999999987765322211             135678899999999999899999999999999


Q ss_pred             CCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEE
Q 014997           82 NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTI  161 (414)
Q Consensus        82 ~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtl  161 (414)
                      ++|+++.||+||||||++++.+| .++...++++++++..++..+...+..+++++|||+|++|+|+|..|+++|.+||+
T Consensus        94 ~~g~~~~yd~LViATGs~~~~~p-~~~~~~~~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtl  172 (396)
T PRK09754         94 TNGESWHWDQLFIATGAAARPLP-LLDALGERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTV  172 (396)
T ss_pred             CCCCEEEcCEEEEccCCCCCCCC-CCCcCCCCEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            99999999999999999987544 34445678999999999999888778899999999999999999999999999999


Q ss_pred             EeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhc
Q 014997          162 IFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERV  241 (414)
Q Consensus       162 v~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~  241 (414)
                      +++.++++++.+++...+.+.+.+++.||++++++.+++++.  ++. ..+.+.+|++++||.||+++|.+||+.+++++
T Consensus       173 v~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~--~~~-~~v~l~~g~~i~aD~Vv~a~G~~pn~~l~~~~  249 (396)
T PRK09754        173 IELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVD--GEK-VELTLQSGETLQADVVIYGIGISANDQLAREA  249 (396)
T ss_pred             EecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEc--CCE-EEEEECCCCEEECCEEEECCCCChhhHHHHhc
Confidence            999999998778889999999999999999999999999974  222 35778899999999999999999998888888


Q ss_pred             CCcccCCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCCCceeeeccCC
Q 014997          242 GLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEY  321 (414)
Q Consensus       242 gl~~~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~~~~~~~~~p~~~~~~~~~  321 (414)
                      ++..+ ++|.||+++||+.|||||+|||+..+.+ .|...+.++|.+|..||+.||+||++. ..+|+.+||||+++|+.
T Consensus       250 gl~~~-~gi~vd~~~~ts~~~IyA~GD~a~~~~~-~g~~~~~~~~~~A~~qg~~aa~ni~g~-~~~~~~~p~~~~~~~~~  326 (396)
T PRK09754        250 NLDTA-NGIVIDEACRTCDPAIFAGGDVAITRLD-NGALHRCESWENANNQAQIAAAAMLGL-PLPLLPPPWFWSDQYSD  326 (396)
T ss_pred             CCCcC-CCEEECCCCccCCCCEEEccceEeeeCC-CCCEEEECcHHHHHHHHHHHHHHhcCC-CCCCCCCCceEEEeCCc
Confidence            98775 6799999999999999999999988766 677777889999999999999999974 56789999999999987


Q ss_pred             CCCCcceeeeEeecCCC-cEEEEcCCC-CcEEEEEEeCCEEEEEEeecCChHHhhHHHHHHhCCCCCChhhhcCCC
Q 014997          322 EGSPRKVWWQFFGDNVG-ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQAS  395 (414)
Q Consensus       322 ~g~~~~~~~~~~G~~~~-~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  395 (414)
                      +       ++++|.... +.+.+++.+ .++..+|+++|+|+|+++ +|+++++..++++++.+.++++..+.|+.
T Consensus       327 ~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (396)
T PRK09754        327 N-------LQFIGDMRGDDWLCRGNPETQKAIWFNLQNGVLIGAVT-LNQGREIRPIRKWIQSGKTFDAKLLIDEN  394 (396)
T ss_pred             c-------EEEeeCCCCCEEEEecCCCCceEEEEEeeCCEEEEEEE-ECCHHHHHHHHHHHHCCCCCCHHHhcCcc
Confidence            5       899997544 344566654 457778889999999996 89999999999999999999998888774

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=100.00  E-value=4.8e-55  Score=415.15  Aligned_cols=377  Identities=46%  Similarity=0.780  Sum_probs=340.2

Q ss_pred             CCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCCCEEEe
Q 014997            2 ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLIT   81 (414)
Q Consensus         2 ~~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~   81 (414)
                      +.++|+++++|.++||+||.||+-++.               .|+++.++..+||++.+|++++++.|+++|.+.++|.+
T Consensus        98 ~~~ri~l~~~~~~~pydr~~Ls~~~~~---------------~~~~~a~r~~e~Yke~gIe~~~~t~v~~~D~~~K~l~~  162 (478)
T KOG1336|consen   98 FTERIALVKREYLLPYDRARLSKFLLT---------------VGEGLAKRTPEFYKEKGIELILGTSVVKADLASKTLVL  162 (478)
T ss_pred             CCcceEEEeccccCcccchhcccceee---------------ccccccccChhhHhhcCceEEEcceeEEeeccccEEEe
Confidence            578999999999999999999984443               23334578899999999999999999999999999999


Q ss_pred             CCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEE
Q 014997           82 NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTI  161 (414)
Q Consensus        82 ~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtl  161 (414)
                      .+|+.+.|++|+||||+.++.+ +++|.+.++++++++++++..+...+..+++|+++|+|++|+|+|..|...+.+||+
T Consensus       163 ~~Ge~~kys~LilATGs~~~~l-~~pG~~~~nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~  241 (478)
T KOG1336|consen  163 GNGETLKYSKLIIATGSSAKTL-DIPGVELKNVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTV  241 (478)
T ss_pred             CCCceeecceEEEeecCccccC-CCCCccccceeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHHHHHhcCceEEE
Confidence            9999999999999999988765 468888999999999999999988888899999999999999999999999999999


Q ss_pred             EeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhc
Q 014997          162 IFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERV  241 (414)
Q Consensus       162 v~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~  241 (414)
                      |++.+.++++.+.+.+.+.+++++++.||++++++.+.+++.+++|++..|.+.||++++||+|++++|.+|++++++. 
T Consensus       242 V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~~-  320 (478)
T KOG1336|consen  242 VFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLEK-  320 (478)
T ss_pred             EccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccccccccccc-
Confidence            9999999999999999999999999999999999999999988889999999999999999999999999999999986 


Q ss_pred             CCcc-cCCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCCCceeeeccC
Q 014997          242 GLNS-SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFE  320 (414)
Q Consensus       242 gl~~-~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~~~~~~~~~p~~~~~~~~  320 (414)
                      +..+ ..|+|.||+++||++|||||+|||+.++.+.++...+++|++.|+.+|+.+...+.......++++||||+..|+
T Consensus       321 g~~~~~~G~i~V~~~f~t~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~av~ai~~~~~~~~~~lPyf~t~~f~  400 (478)
T KOG1336|consen  321 GILLDSKGGIKVDEFFQTSVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGRQAVKAIKMAPQDAYDYLPYFYTRFFS  400 (478)
T ss_pred             cceecccCCEeehhceeeccCCcccccceeecccccccccccchHHHHHHHHHHhhhhhhhccCcccccccchHHHHHhh
Confidence            5555 378999999999999999999999999998888887899999999999987777765444447799999999998


Q ss_pred             CCCCCcceeeeEeecCCCcEEEEcCCC-CcEEEEEEeCCEEEEEEeecCChHHhhHHHHHHhCCCCCChhhhcCCCcHHH
Q 014997          321 YEGSPRKVWWQFFGDNVGETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEE  399 (414)
Q Consensus       321 ~~g~~~~~~~~~~G~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  399 (414)
                      ..       |+++|....+.++.|+.+ .+|..||++ +..+++.+..+..+....+..+++.++.+..-++.++++.+.
T Consensus       401 ~~-------~~~~G~g~~~~v~~G~~e~~~f~ay~~k-~~~v~a~~~~g~~~~~~~~a~l~~~~~~v~~~~~~~~~~~~~  472 (478)
T KOG1336|consen  401 LS-------WRFAGDGVGDVVLFGDLEPGSFGAYWIK-GDKVGAVAEGGRDEEVSQFAKLARQGPEVTSLKLLSKSGDSF  472 (478)
T ss_pred             hh-------ccccCcCccceeeecccccccceeeEee-ccEEEEEeccCCChHHHHHHHHHhcCCcchhhhhccccchhh
Confidence            64       899999888888888886 568999999 888888887788888899999999999999988888888888


Q ss_pred             HHHH
Q 014997          400 ALEI  403 (414)
Q Consensus       400 ~~~~  403 (414)
                      +...
T Consensus       473 ~~~~  476 (478)
T KOG1336|consen  473 WLTI  476 (478)
T ss_pred             HHhh
Confidence            7764

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=100.00  E-value=6.6e-47  Score=400.34  Aligned_cols=356  Identities=22%  Similarity=0.360  Sum_probs=295.9

Q ss_pred             CCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCCCEEEe
Q 014997            2 ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLIT   81 (414)
Q Consensus         2 ~~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~   81 (414)
                      ++.+||||++|++++|+|++||+ ++.+. ...+++           .....+|++++||+++++++|+.||++++.|++
T Consensus        23 ~~~~Itvi~~e~~~~y~r~~L~~-~l~g~-~~~~~l-----------~~~~~~~~~~~gv~~~~g~~V~~Id~~~k~V~~   89 (785)
T TIGR02374        23 HMFEITIFGEEPHPNYNRILLSS-VLQGE-ADLDDI-----------TLNSKDWYEKHGITLYTGETVIQIDTDQKQVIT   89 (785)
T ss_pred             CCCeEEEEeCCCCCCcccccccH-HHCCC-CCHHHc-----------cCCCHHHHHHCCCEEEcCCeEEEEECCCCEEEE
Confidence            35699999999999999999998 77653 233333           356789999999999999999999999999999


Q ss_pred             CCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEE
Q 014997           82 NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTI  161 (414)
Q Consensus        82 ~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtl  161 (414)
                      .+|+++.||+||||||+.|+. |+++|.+.++++++++++++..+++....+++++|||||++|+|+|..|+++|.+|++
T Consensus        90 ~~g~~~~yD~LVlATGs~p~~-p~ipG~~~~~v~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtv  168 (785)
T TIGR02374        90 DAGRTLSYDKLILATGSYPFI-LPIPGADKKGVYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSV  168 (785)
T ss_pred             CCCcEeeCCEEEECCCCCcCC-CCCCCCCCCCEEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEE
Confidence            999999999999999999874 5578888889999999999999888877889999999999999999999999999999


Q ss_pred             EeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhc
Q 014997          162 IFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERV  241 (414)
Q Consensus       162 v~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~  241 (414)
                      +++.++++++.+++..+..+.+.+++.||++++++.++++..  ++....+.+++|+++++|+||+++|.+|+.++++++
T Consensus       169 v~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~la~~~  246 (785)
T TIGR02374       169 IHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVG--ATKADRIRFKDGSSLEADLIVMAAGIRPNDELAVSA  246 (785)
T ss_pred             EccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEc--CCceEEEEECCCCEEEcCEEEECCCCCcCcHHHHhc
Confidence            999999998889999999999999999999999999999974  345567889999999999999999999999998899


Q ss_pred             CCcccCCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCCCcee-eeccC
Q 014997          242 GLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFY-SRVFE  320 (414)
Q Consensus       242 gl~~~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~~~~~~~~~p~~~-~~~~~  320 (414)
                      ++..+ ++|.||++|||+.|||||+|||+.++...++      .|..|..||+.+|.||++....+|...+... .+.++
T Consensus       247 gl~~~-ggI~Vd~~~~Ts~p~IyA~GD~a~~~~~~~g------l~~~a~~qa~vaA~ni~g~~~~~~~~~~~~~~lk~~g  319 (785)
T TIGR02374       247 GIKVN-RGIIVNDSMQTSDPDIYAVGECAEHNGRVYG------LVAPLYEQAKVLADHICGVECEEYEGSDLSAKLKLLG  319 (785)
T ss_pred             CCccC-CCEEECCCcccCCCCEEEeeecceeCCcccc------cHHHHHHHHHHHHHHhcCCCCcCCCCCccceEEEECC
Confidence            99886 7899999999999999999999997665433      5777999999999999975435565544322 12333


Q ss_pred             CCCCCcceeeeEeecCCC----cEE-EEcCCCCcEEEEEEeCCEEEEEEeecCChHHhhHHHHHHhCCCCCCh
Q 014997          321 YEGSPRKVWWQFFGDNVG----ETI-EIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDK  388 (414)
Q Consensus       321 ~~g~~~~~~~~~~G~~~~----~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~  388 (414)
                      +.       +..+|....    ..+ ........|.++++++++|+|+++ +++..+...++++++++..++.
T Consensus       320 ~~-------v~s~G~~~~~~~~~~~~~~d~~~~~y~kl~~~~~rLlGavl-vgd~~~~~~L~~li~~~~~l~~  384 (785)
T TIGR02374       320 VD-------VWSAGDAQETERTTSIKIYDEQKGIYKKLVLSDDKLLGAVL-FGDTSDYGRLLDMVLKQADISE  384 (785)
T ss_pred             cc-------eEecccCCCCCCcEEEEEEcCCCCEEEEEEEECCEEEEEEE-ECCHHHHHHHHHHHHcCCCCCc
Confidence            22       344454321    122 222223558899999999999997 7888899999999987765543

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=100.00  E-value=1.6e-48  Score=386.13  Aligned_cols=355  Identities=23%  Similarity=0.384  Sum_probs=305.5

Q ss_pred             CCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCCCEEEeC
Q 014997            3 DGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITN   82 (414)
Q Consensus         3 ~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~   82 (414)
                      .-.|||+++|++++|+|+.||. ++.+ ++..+++           .+...+||+++||+++.+.+|+.||++++.|+++
T Consensus        29 ~~~iTvfg~Ep~~nY~Ri~Ls~-vl~~-~~~~edi-----------~l~~~dwy~~~~i~L~~~~~v~~idr~~k~V~t~   95 (793)
T COG1251          29 LYDITVFGEEPRPNYNRILLSS-VLAG-EKTAEDI-----------SLNRNDWYEENGITLYTGEKVIQIDRANKVVTTD   95 (793)
T ss_pred             cceEEEeccCCCccccceeecc-ccCC-CccHHHH-----------hccchhhHHHcCcEEEcCCeeEEeccCcceEEcc
Confidence            4579999999999999999998 8877 3444444           4678999999999999999999999999999999


Q ss_pred             CCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEE
Q 014997           83 SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTII  162 (414)
Q Consensus        83 ~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv  162 (414)
                      .|.++.||+|||||||.|..+| +||.+.++++.+++++|...+....+..++.+|||||..|+|+|..|...|.+++|+
T Consensus        96 ~g~~~~YDkLilATGS~pfi~P-iPG~~~~~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vv  174 (793)
T COG1251          96 AGRTVSYDKLIIATGSYPFILP-IPGSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVV  174 (793)
T ss_pred             CCcEeecceeEEecCccccccC-CCCCCCCCeeEEecHHHHHHHHHHHhccCCcEEEccchhhhHHHHHHHhCCCceEEE
Confidence            9999999999999999998554 899999999999999999998887666778899999999999999999999999999


Q ss_pred             eeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhcC
Q 014997          163 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG  242 (414)
Q Consensus       163 ~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~g  242 (414)
                      +..+.++.+++++.....+++.++++|++++++....++..  .+.+..+.++||..+++|+||+++|.+||.++..++|
T Consensus       175 h~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g--~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~ela~~aG  252 (793)
T COG1251         175 HIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVG--EDKVEGVRFADGTEIPADLVVMAVGIRPNDELAKEAG  252 (793)
T ss_pred             eecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhhc--CcceeeEeecCCCcccceeEEEecccccccHhHHhcC
Confidence            99999999999999999999999999999999998888864  5677799999999999999999999999999999999


Q ss_pred             CcccCCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCC-CCceeeeccCC
Q 014997          243 LNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDY-LPYFYSRVFEY  321 (414)
Q Consensus       243 l~~~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~~~~~~~~-~p~~~~~~~~~  321 (414)
                      +..++ +|+||++||||+|+|||+|+|+.+....+|.      +.-+..||+.+|.++.+.....|.. +++   ..+..
T Consensus       253 lavnr-GIvvnd~mqTsdpdIYAvGEcae~~g~~yGL------VaP~yeq~~v~a~hl~~~~~~~y~gsv~s---tkLKv  322 (793)
T COG1251         253 LAVNR-GIVVNDYMQTSDPDIYAVGECAEHRGKVYGL------VAPLYEQAKVLADHLCGGEAEAYEGSVTS---TKLKV  322 (793)
T ss_pred             cCcCC-CeeecccccccCCCeeehhhHHHhcCcccee------hhHHHHHHHHHHHHhccCcccccccccch---hhhcc
Confidence            99985 9999999999999999999999998887775      4448899999999999765444433 332   33334


Q ss_pred             CCCCcceeeeEeecCC----C-cEEEEcCCCCcEEEEEEeCCEEEEEEeecCChHHhhHHHHHHhCCCCCCh
Q 014997          322 EGSPRKVWWQFFGDNV----G-ETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDK  388 (414)
Q Consensus       322 ~g~~~~~~~~~~G~~~----~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~  388 (414)
                      .|..    +-..|+..    . .++++......|.++.+++|+|+|+++ .|+..+-..+..|+.++..++.
T Consensus       323 ~Gvd----l~S~GD~~e~~~~~~iv~~D~~~~iYKrlvL~dd~IvgavL-~GDt~d~~~l~~li~~~~~~se  389 (793)
T COG1251         323 SGVD----VFSAGDFQETEGAESIVFRDEQRGIYKKLVLKDDKIVGAVL-YGDTSDGGWLLDLILKGADISE  389 (793)
T ss_pred             cccc----eeeccchhhcCCCceEEEecccccceeEEEEeCCeEEEEEE-EeecccchHHHHHHhcCCCccc
Confidence            4422    33344422    1 234444445779999999999999997 8999999999999998888876

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=100.00  E-value=4.4e-46  Score=393.66  Aligned_cols=356  Identities=20%  Similarity=0.338  Sum_probs=289.8

Q ss_pred             CCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCCCEEEeC
Q 014997            3 DGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITN   82 (414)
Q Consensus         3 ~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~   82 (414)
                      +.+||||++|++++|+|+.|++ ++.+  ...+++           .....+|++++||+++.+++|+.||++.+.|++.
T Consensus        30 ~~~Itvi~~e~~~~Y~r~~L~~-~~~~--~~~~~l-----------~~~~~~~~~~~gI~~~~g~~V~~Id~~~~~V~~~   95 (847)
T PRK14989         30 NFDITVFCEEPRIAYDRVHLSS-YFSH--HTAEEL-----------SLVREGFYEKHGIKVLVGERAITINRQEKVIHSS   95 (847)
T ss_pred             CCeEEEEECCCCCcccCCcchH-hHcC--CCHHHc-----------cCCCHHHHHhCCCEEEcCCEEEEEeCCCcEEEEC
Confidence            4689999999999999999997 5554  223333           3557889999999999999999999999999999


Q ss_pred             CCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEE
Q 014997           83 SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTII  162 (414)
Q Consensus        83 ~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv  162 (414)
                      +|+++.||+||||||++|. .|+++|.+.++++++++++++..+......+++++|||||++|+|+|..|+++|.+|+++
T Consensus        96 ~G~~i~yD~LVIATGs~p~-~p~ipG~~~~~v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvV  174 (847)
T PRK14989         96 AGRTVFYDKLIMATGSYPW-IPPIKGSETQDCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVETHVI  174 (847)
T ss_pred             CCcEEECCEEEECCCCCcC-CCCCCCCCCCCeEEECCHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence            9999999999999999987 456788777889999999999998888778899999999999999999999999999999


Q ss_pred             eeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhcC
Q 014997          163 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG  242 (414)
Q Consensus       163 ~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~g  242 (414)
                      ++.++++++.++++.+..+.+.++++||++++++.++++..++++....+.+++|+++++|+||+++|.+||+++++++|
T Consensus       175 e~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~~~G  254 (847)
T PRK14989        175 EFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDKLATQCG  254 (847)
T ss_pred             eccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCchHHhhcC
Confidence            99999998889999999999999999999999999999975433445578889999999999999999999999888999


Q ss_pred             Cccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCCCce-eeeccC
Q 014997          243 LNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYF-YSRVFE  320 (414)
Q Consensus       243 l~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~~~~~~~~~p~~-~~~~~~  320 (414)
                      +..+ +|+|.||++|||+.|+|||+|||+.+....++      .+..|..||+.+|.||++.. ..|...... ..+.++
T Consensus       255 l~~~~~G~I~VD~~l~Ts~p~IYAiGD~a~~~~~~~g------l~~~a~~~a~vaa~~i~g~~-~~~~g~~~~~~lk~~G  327 (847)
T PRK14989        255 LAVAPRGGIVINDSCQTSDPDIYAIGECASWNNRVFG------LVAPGYKMAQVAVDHLLGSE-NAFEGADLSAKLKLLG  327 (847)
T ss_pred             ccCCCCCcEEECCCCcCCCCCEEEeecceeEcCcccc------cHHHHHHHHHHHHHHhcCCC-cCCCCcccceEEEECC
Confidence            9865 57899999999999999999999998665433      56779999999999999753 344432221 112333


Q ss_pred             CCCCCcceeeeEeecCCCc------EEEEcCCCCcEEEEEEe--CCEEEEEEeecCChHHhhHHHHHHhCCCCCCh
Q 014997          321 YEGSPRKVWWQFFGDNVGE------TIEIGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLLPTLARSQPFVDK  388 (414)
Q Consensus       321 ~~g~~~~~~~~~~G~~~~~------~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~  388 (414)
                      +.       +..+|...+.      .........-|.++.++  +++|+|+++ +|+..+...+..++..+..++.
T Consensus       328 ~~-------v~s~G~~~~~~~~~~~~~~~~~~~~~y~Klv~~~~~~~LlGa~l-vGd~~~~~~l~~~~~~~~~l~~  395 (847)
T PRK14989        328 VD-------VGGIGDAHGRTPGARSYVYLDESKEIYKRLIVSEDNKTLLGAVL-VGDTSDYGNLLQLVLNAIELPE  395 (847)
T ss_pred             cc-------eEecccccCCCCCceeEEEEcCCCCEEEEEEEECCCCEEEEEEE-ECCHHHHHHHHHHHHcCCCCcc
Confidence            21       3344532211      22233333457788775  469999997 7888888888888877766554

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=100.00  E-value=3.5e-45  Score=359.39  Aligned_cols=336  Identities=23%  Similarity=0.351  Sum_probs=268.1

Q ss_pred             CCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCC-CCHhHHHHcCCeEEcCCcEEEEeCCCCEEE
Q 014997            2 ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER-QTPEWYKEKGIEMIYQDPVTSIDIEKQTLI   80 (414)
Q Consensus         2 ~~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~-~~~~~~~~~~i~~~~~~~V~~id~~~~~V~   80 (414)
                      ++++||||++|++.||+||.|++ ++.+ .....++           .. ...++++++|++++++++|+++|++++.|.
T Consensus        26 ~~~~Itvi~~~~~~~y~~~~l~~-~~~~-~~~~~~~-----------~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~   92 (377)
T PRK04965         26 AHIPITLITADSGDEYNKPDLSH-VFSQ-GQRADDL-----------TRQSAGEFAEQFNLRLFPHTWVTDIDAEAQVVK   92 (377)
T ss_pred             cCCCEEEEeCCCCCCcCcCcCcH-HHhC-CCCHHHh-----------hcCCHHHHHHhCCCEEECCCEEEEEECCCCEEE
Confidence            67899999999999999999987 4444 2333332           12 245677889999999999999999999888


Q ss_pred             eCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEE
Q 014997           81 TNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT  160 (414)
Q Consensus        81 ~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vt  160 (414)
                      + ++..+.||+||||||+++. .|+++|.+.  +++++++.++..+...+..+++++|||+|++|+|+|..|+++|.+|+
T Consensus        93 ~-~~~~~~yd~LVlATG~~~~-~p~i~G~~~--v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L~~~g~~Vt  168 (377)
T PRK04965         93 S-QGNQWQYDKLVLATGASAF-VPPIPGREL--MLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVT  168 (377)
T ss_pred             E-CCeEEeCCEEEECCCCCCC-CCCCCCCce--EEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEE
Confidence            7 4667999999999999986 455566433  78888999988888777788999999999999999999999999999


Q ss_pred             EEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhh
Q 014997          161 IIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER  240 (414)
Q Consensus       161 lv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~  240 (414)
                      ++++.++++++.+++.....+.+.+++.||++++++.++++..+++  ...+.+.+|++++||.+|+|+|.+|+..++++
T Consensus       169 lv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~--~~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~~  246 (377)
T PRK04965        169 LVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDS--GIRATLDSGRSIEVDAVIAAAGLRPNTALARR  246 (377)
T ss_pred             EEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEccCC--EEEEEEcCCcEEECCEEEECcCCCcchHHHHH
Confidence            9999999988778899999999999999999999999999985422  23577889999999999999999999888889


Q ss_pred             cCCcccCCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCCCceee-ecc
Q 014997          241 VGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYS-RVF  319 (414)
Q Consensus       241 ~gl~~~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~~~~~~~~~p~~~~-~~~  319 (414)
                      +|+..++ +|.||++++|+.|||||+|||+..+...      ...|..|..||+.+|+||++.. ..|...+..++ ..+
T Consensus       247 ~gl~~~~-gi~vd~~l~ts~~~VyA~GD~a~~~~~~------~~~~~~a~~~g~~~a~n~~g~~-~~~~~~~~~~~~~~~  318 (377)
T PRK04965        247 AGLAVNR-GIVVDSYLQTSAPDIYALGDCAEINGQV------LPFLQPIQLSAMALAKNLLGQN-TPLKLPAMLVKVKTP  318 (377)
T ss_pred             CCCCcCC-CEEECCCcccCCCCEEEeeecEeECCce------eehHHHHHHHHHHHHHHhcCCC-cccccCCccEEEecC
Confidence            9998864 6999999999999999999999875432      2357779999999999999743 45655443322 344


Q ss_pred             CCCCCCcceeeeEeecCCC---cEEEEcCCCCcEEEEEEeCCEEEEEEeecCChH
Q 014997          320 EYEGSPRKVWWQFFGDNVG---ETIEIGNFDPKIATFWIDSGKLKGVLVESGSPE  371 (414)
Q Consensus       320 ~~~g~~~~~~~~~~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  371 (414)
                      ++       .+.++|...+   .+....+.+..|.++++++|+++|+++..+...
T Consensus       319 ~~-------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~g~~~~  366 (377)
T PRK04965        319 EL-------PLQLAGETQRQDLRWQINAESQGMVAKGVDEAGQLRAFVVSEDRMK  366 (377)
T ss_pred             ce-------eeEECCCCCCCCceEEEEeCCCCeEEEEEccCCcEEEEEEEChhHH
Confidence            43       3667776543   122222333557788889999999998444343

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=100.00  E-value=1.8e-41  Score=338.83  Aligned_cols=368  Identities=21%  Similarity=0.302  Sum_probs=266.9

Q ss_pred             CCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCCCEEEe
Q 014997            2 ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLIT   81 (414)
Q Consensus         2 ~~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~   81 (414)
                      ++.+||||+++++++|.++.|+. ++.+......++.          .....+++++.||+++++++|++||++++.|.+
T Consensus        25 ~~~~I~li~~~~~~~~~~~~lp~-~~~~~~~~~~~~~----------~~~~~~~~~~~~i~v~~~~~V~~Id~~~~~v~~   93 (438)
T PRK13512         25 KESDIIIFEKDRDMSFANCALPY-YIGEVVEDRKYAL----------AYTPEKFYDRKQITVKTYHEVIAINDERQTVTV   93 (438)
T ss_pred             CCCCEEEEECCCCcccccCCcch-hhcCccCCHHHcc----------cCCHHHHHHhCCCEEEeCCEEEEEECCCCEEEE
Confidence            57899999999999999877775 4433111111110          122345557789999998999999999999988


Q ss_pred             CCC---c--EEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhc--CCCeEEEECCChHHHHHHHHHHh
Q 014997           82 NSG---K--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVG  154 (414)
Q Consensus        82 ~~g---~--~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~--~~~~vvVvGgG~~g~e~A~~l~~  154 (414)
                      .++   +  ++.||+||||||++|+. |..   +.+++++++++.++..+.+.+.  .+++++|||||++|+|+|..|++
T Consensus        94 ~~~~~~~~~~~~yd~lviAtGs~~~~-~~~---~~~~~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~  169 (438)
T PRK13512         94 LNRKTNEQFEESYDKLILSPGASANS-LGF---ESDITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYE  169 (438)
T ss_pred             EECCCCcEEeeecCEEEECCCCCCCC-CCC---CCCCeEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHh
Confidence            653   2  47999999999999864 332   2467888888888887776543  46899999999999999999999


Q ss_pred             CCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997          155 WKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       155 ~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (414)
                      +|.+||++++.+++++ .+++++.+.+.+.++++||++++++++++++..      .+.+++|++++||.|++++|.+||
T Consensus       170 ~g~~Vtli~~~~~l~~-~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~------~v~~~~g~~~~~D~vl~a~G~~pn  242 (438)
T PRK13512        170 RGLHPTLIHRSDKINK-LMDADMNQPILDELDKREIPYRLNEEIDAINGN------EVTFKSGKVEHYDMIIEGVGTHPN  242 (438)
T ss_pred             CCCcEEEEecccccch-hcCHHHHHHHHHHHHhcCCEEEECCeEEEEeCC------EEEECCCCEEEeCEEEECcCCCcC
Confidence            9999999999998886 589999999999999999999999999999632      567788889999999999999999


Q ss_pred             ChhhhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCC-CCCC
Q 014997          235 VSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTY-DYLP  312 (414)
Q Consensus       235 ~~~l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~~~~~~-~~~p  312 (414)
                      ++++++.|+..+ +|+|.||+++||+.|||||+|||+.......+..........|..+|+.+|+||++....++ ...+
T Consensus       243 ~~~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~g~~~~~~~~~~~  322 (438)
T PRK13512        243 SKFIESSNIKLDDKGFIPVNDKFETNVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDTIEFKGFLG  322 (438)
T ss_pred             hHHHHhcCcccCCCCcEEECCCcccCCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhcCCCccccCCccc
Confidence            999999998764 57799999999999999999999975433222222233455688999999999997432233 2222


Q ss_pred             ceeeeccCCCCCCcceeeeEeecCCCc-------EEEE-----c----CCCCcEEEEEEe--CCEEEEEEeecCC-hHHh
Q 014997          313 YFYSRVFEYEGSPRKVWWQFFGDNVGE-------TIEI-----G----NFDPKIATFWID--SGKLKGVLVESGS-PEEF  373 (414)
Q Consensus       313 ~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~~~~-----~----~~~~~~~~~~~~--~~~~~g~~~~~~~-~~~~  373 (414)
                      ..+...++..       +..+|....+       ....     .    +...-+.+++++  +++|+|+++++.+ +.++
T Consensus       323 ~~~~~~~~~~-------ia~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilGa~~~g~~~a~e~  395 (438)
T PRK13512        323 NNIVKFFDYT-------FASVGVKPNELKQFDYKMVEVTQGAHANYYPGNSPLHLRVYYDTSNRKILRAAAVGKEGADKR  395 (438)
T ss_pred             ceEEEEcCce-------EEeecCCHHHHccCCcEEEEEecCCcCCCcCCCceEEEEEEEECCCCeEEEEEEEccccHHHH
Confidence            2222333321       3334433211       0000     0    001225666664  5899999986654 5555


Q ss_pred             h-HHHHHHhCCCCCCh-hh--hcCCCcHH
Q 014997          374 Q-LLPTLARSQPFVDK-AK--LQQASSVE  398 (414)
Q Consensus       374 ~-~~~~l~~~~~~~~~-~~--~~~~~~~~  398 (414)
                      . .+..+|+.+.+++. ..  +..||+++
T Consensus       396 i~~~~~ai~~~~t~~~l~~~~~~~~P~~~  424 (438)
T PRK13512        396 IDVLSMAMMNQLTVDELTEFEVAYAPPYS  424 (438)
T ss_pred             HHHHHHHHHcCCcHHHHhhcccccCCCCC
Confidence            4 44556788888776 22  45666655

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=100.00  E-value=4.1e-41  Score=337.78  Aligned_cols=375  Identities=20%  Similarity=0.279  Sum_probs=275.1

Q ss_pred             CCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCCCEEEe
Q 014997            2 ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLIT   81 (414)
Q Consensus         2 ~~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~   81 (414)
                      ++.+||||++++++.|.++.++. ++.+......++           ..+..+++++.|++++++++|+.||++++.|.+
T Consensus        24 ~~~~Vtli~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----------~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~   91 (444)
T PRK09564         24 KELEITVYEKTDIVSFGACGLPY-FVGGFFDDPNTM-----------IARTPEEFIKSGIDVKTEHEVVKVDAKNKTITV   91 (444)
T ss_pred             CCCcEEEEECCCcceeecCCCce-EeccccCCHHHh-----------hcCCHHHHHHCCCeEEecCEEEEEECCCCEEEE
Confidence            35689999999999998766664 333211111111           245678889999999988999999999998887


Q ss_pred             CC---CcEEe--cCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhc--CCCeEEEECCChHHHHHHHHHHh
Q 014997           82 NS---GKLLK--YGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVG  154 (414)
Q Consensus        82 ~~---g~~~~--yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~--~~~~vvVvGgG~~g~e~A~~l~~  154 (414)
                      .+   |+.+.  ||+||||||++|.. |.++|.+.+++++++++.++.++.+.+.  .+++++|||+|++|+|+|..|++
T Consensus        92 ~~~~~~~~~~~~yd~lviAtG~~~~~-~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~  170 (444)
T PRK09564         92 KNLKTGSIFNDTYDKLMIATGARPII-PPIKNINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKH  170 (444)
T ss_pred             EECCCCCEEEecCCEEEECCCCCCCC-CCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHh
Confidence            64   55666  99999999999864 5567776788998988888877766553  46899999999999999999999


Q ss_pred             CCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997          155 WKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       155 ~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (414)
                      .|.+|+++++.+++++..+++++.+.+.+.+++.||+++++++++++..  ++.+..+.+++ .+++||.+++|+|.+|+
T Consensus       171 ~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~v~~~~-~~i~~d~vi~a~G~~p~  247 (444)
T PRK09564        171 LGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIG--EDKVEGVVTDK-GEYEADVVIVATGVKPN  247 (444)
T ss_pred             cCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEEEEeCC-CEEEcCEEEECcCCCcC
Confidence            9999999999998887668999999999999999999999999999963  34444455544 47999999999999999


Q ss_pred             ChhhhhcCCcc-cCCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCC-CC
Q 014997          235 VSPFERVGLNS-SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDY-LP  312 (414)
Q Consensus       235 ~~~l~~~gl~~-~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~~~~~~~~-~p  312 (414)
                      .++++++|++. ++|+|.||++++|+.|||||+|||+..+....+.......+..|.+||+.+|+||++.. ..++. .+
T Consensus       248 ~~~l~~~gl~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g~~-~~~~~~~~  326 (444)
T PRK09564        248 TEFLEDTGLKTLKNGAIIVDEYGETSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAGRH-VSFKGTLG  326 (444)
T ss_pred             HHHHHhcCccccCCCCEEECCCcccCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhcCCC-CCCCCccc
Confidence            99999999876 35789999999999999999999998765544443344578889999999999999743 23321 11


Q ss_pred             ceeeeccCCCCCCcceeeeEeecCCCc---------EEEEc---------CCCCcEEEEEEe--CCEEEEEEeecCC-hH
Q 014997          313 YFYSRVFEYEGSPRKVWWQFFGDNVGE---------TIEIG---------NFDPKIATFWID--SGKLKGVLVESGS-PE  371 (414)
Q Consensus       313 ~~~~~~~~~~g~~~~~~~~~~G~~~~~---------~~~~~---------~~~~~~~~~~~~--~~~~~g~~~~~~~-~~  371 (414)
                      ......+++       .+..+|....+         .....         +...-|.++.++  +++|+|+++++.. +.
T Consensus       327 ~~~~~~~~~-------~~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~~~~  399 (444)
T PRK09564        327 SACIKVLDL-------EAARTGLTEEEAKKLGIDYKTVFIKDKNHTNYYPGQEDLYVKLIYEADTKVILGGQIIGKKGAV  399 (444)
T ss_pred             ceEEEECCE-------EEEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEEEEEEECCCCeEEeEEEEcCccHH
Confidence            111112222       13444533211         01000         011235666663  6999999985543 53


Q ss_pred             H-hhHHHHHHhCCCCCChhh--hcC-CCcHHHH
Q 014997          372 E-FQLLPTLARSQPFVDKAK--LQQ-ASSVEEA  400 (414)
Q Consensus       372 ~-~~~~~~l~~~~~~~~~~~--~~~-~~~~~~~  400 (414)
                      + +..+..+|+.+.+++.-.  ... +|++.|+
T Consensus       400 ~~i~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~  432 (444)
T PRK09564        400 LRIDALAVAIYAKLTTQELGMMDFCYAPPFART  432 (444)
T ss_pred             HHHHHHHHHHHCCCCHHHHhhcccccCCCCCCC
Confidence            4 445666789898887732  222 3556543

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=100.00  E-value=5.5e-40  Score=327.84  Aligned_cols=362  Identities=21%  Similarity=0.327  Sum_probs=271.5

Q ss_pred             CCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCH-hHHHHcCCeEEcCCcEEEEeCCCCEEE
Q 014997            2 ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP-EWYKEKGIEMIYQDPVTSIDIEKQTLI   80 (414)
Q Consensus         2 ~~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~-~~~~~~~i~~~~~~~V~~id~~~~~V~   80 (414)
                      ++.+||||++++++.|.+..++. +..+......++           ..... +++.+.|++++++++|+++|++++.|.
T Consensus        11 ~~~~Vtlid~~~~~~~~~~~l~~-~~~g~~~~~~~~-----------~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~   78 (427)
T TIGR03385        11 KESDIIVFEKTEDVSFANCGLPY-VIGGVIDDRNKL-----------LAYTPEVFIKKRGIDVKTNHEVIEVNDERQTVV   78 (427)
T ss_pred             CCCcEEEEEcCCceeEEcCCCCe-EeccccCCHHHc-----------ccCCHHHHHHhcCCeEEecCEEEEEECCCCEEE
Confidence            46789999999998887545664 444321111111           12333 455889999998899999999999887


Q ss_pred             eCC---CcEEe--cCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhh--cCCCeEEEECCChHHHHHHHHHH
Q 014997           81 TNS---GKLLK--YGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL--EKAKKVVVVGGGYIGMEVAAAAV  153 (414)
Q Consensus        81 ~~~---g~~~~--yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~--~~~~~vvVvGgG~~g~e~A~~l~  153 (414)
                      +.+   ++++.  ||+||||||++|+. |.++|.+.+++++.+++.++..++..+  ..+++|+|||+|++|+|+|..|+
T Consensus        79 ~~~~~~~~~~~~~yd~lIiATG~~p~~-~~i~G~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~  157 (427)
T TIGR03385        79 VRNNKTNETYEESYDYLILSPGASPIV-PNIEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALR  157 (427)
T ss_pred             EEECCCCCEEecCCCEEEECCCCCCCC-CCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHH
Confidence            753   45677  99999999999864 556776667888899998888877766  45789999999999999999999


Q ss_pred             hCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcC
Q 014997          154 GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  233 (414)
Q Consensus       154 ~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p  233 (414)
                      ++|.+|+++++.+.++...+++++...+.+.+++.||++++++.++++..+  +.+  +.+.+|++++||.+|+++|.+|
T Consensus       158 ~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~--~~~--v~~~~g~~i~~D~vi~a~G~~p  233 (427)
T TIGR03385       158 ERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGE--ERV--KVFTSGGVYQADMVILATGIKP  233 (427)
T ss_pred             hCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecC--CCE--EEEcCCCEEEeCEEEECCCccC
Confidence            999999999999888655688899999999999999999999999999743  332  4667888999999999999999


Q ss_pred             CChhhhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCC-
Q 014997          234 TVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYL-  311 (414)
Q Consensus       234 ~~~~l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~~~~~~~~~-  311 (414)
                      +.++++++++..+ +|+|.||++++|+.|+|||+|||+..+....+.......+..|.+||+.+|+||++. ...+... 
T Consensus       234 ~~~~l~~~gl~~~~~G~i~vd~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~g~-~~~~~~~~  312 (427)
T TIGR03385       234 NSELAKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAGN-DIEFKGVL  312 (427)
T ss_pred             CHHHHHhcCcccCCCCCEEECCCcEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhcCC-CCCCCCcc
Confidence            9999999998875 578999999999999999999999876654444333457788999999999999974 3445432 


Q ss_pred             CceeeeccCCCCCCcceeeeEeecCCCc---------EEEEcCC---------CCcEEEEEEe--CCEEEEEEeecCC-h
Q 014997          312 PYFYSRVFEYEGSPRKVWWQFFGDNVGE---------TIEIGNF---------DPKIATFWID--SGKLKGVLVESGS-P  370 (414)
Q Consensus       312 p~~~~~~~~~~g~~~~~~~~~~G~~~~~---------~~~~~~~---------~~~~~~~~~~--~~~~~g~~~~~~~-~  370 (414)
                      +..++..+++.       +..+|....+         .......         ..-+.++.++  +++|+|+++++.. +
T Consensus       313 ~~~~~~~~~~~-------~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~~a  385 (427)
T TIGR03385       313 GTNITKFFDLT-------IASTGVTENEAKKLNIDYKTVFVKAKTHANYYPGNSPLHLKLIYEKDTRRILGAQAVGKEGA  385 (427)
T ss_pred             eeeEEEEcCeE-------EEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEEEEEEECCCCeEEEEEEEccccH
Confidence            23333444432       5566653321         1111000         1125677764  5999999986666 6


Q ss_pred             HHhh-HHHHHHhCCCCCCh
Q 014997          371 EEFQ-LLPTLARSQPFVDK  388 (414)
Q Consensus       371 ~~~~-~~~~l~~~~~~~~~  388 (414)
                      .++. .+..+|+.+.+++.
T Consensus       386 ~e~i~~~~~ai~~~~t~~~  404 (427)
T TIGR03385       386 DKRIDVLAAAIMAGLTVKD  404 (427)
T ss_pred             HHHHHHHHHHHHCCCCHHH
Confidence            5654 44556788887776

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=100.00  E-value=4e-42  Score=318.56  Aligned_cols=378  Identities=23%  Similarity=0.369  Sum_probs=294.5

Q ss_pred             CCCcEEEEcCCCCCCCCCCCCCccccCCCCCCC-CCCCCCccccCCC--CCCCCHhHH---------HHcCCeEEcCCcE
Q 014997            2 ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKP-ARLPGFHTCVGSG--GERQTPEWY---------KEKGIEMIYQDPV   69 (414)
Q Consensus         2 ~~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~-~~l~~~~~~~g~~--~~~~~~~~~---------~~~~i~~~~~~~V   69 (414)
                      ++.++.||+.|+.+||.||||||+++...+... ..| -|-.-+|.+  +++.+..+|         ..-||-+..|.+|
T Consensus       202 a~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~l-rfkqwsGkeRsiffepd~FfvspeDLp~~~nGGvAvl~G~kv  280 (659)
T KOG1346|consen  202 ATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKL-RFKQWSGKERSIFFEPDGFFVSPEDLPKAVNGGVAVLRGRKV  280 (659)
T ss_pred             CCceEEeeccCccCcccCCCcchhceecCCCChhhhe-eecccCCccceeEecCCcceeChhHCcccccCceEEEeccce
Confidence            678999999999999999999999776433322 121 222334443  334444333         2237999999999


Q ss_pred             EEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCC---CCCCEEEecCHHHHHHHHHhhcCCCeEEEECCChHHH
Q 014997           70 TSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGG---YLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGM  146 (414)
Q Consensus        70 ~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~---~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~  146 (414)
                      ..||.+.+.|+++||.+|.||+++||||.+|+.++.+...   -...+.+++...|++++...+...++|.|||+|++|.
T Consensus       281 vkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~kit~fr~p~DF~rlek~~aek~siTIiGnGflgS  360 (659)
T KOG1346|consen  281 VKIDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFEEASEEVKQKITYFRYPADFKRLEKGLAEKQSITIIGNGFLGS  360 (659)
T ss_pred             EEeecccCeEEecCCcEeehhheeeecCcCcccchhhhhcCHHhhhheeEEecchHHHHHHHhhhhcceEEEEcCcchhh
Confidence            9999999999999999999999999999999887754322   1356788899999999988887889999999999999


Q ss_pred             HHHHHHHhC----CCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEec
Q 014997          147 EVAAAAVGW----KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA  222 (414)
Q Consensus       147 e~A~~l~~~----g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~  222 (414)
                      |+|+.|.+.    |.+|+-+......+..++++-++++..+.+++.||.++.+..|.++..... . ..+.++||.++..
T Consensus       361 ELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~-n-l~lkL~dG~~l~t  438 (659)
T KOG1346|consen  361 ELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCK-N-LVLKLSDGSELRT  438 (659)
T ss_pred             hHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhcc-c-eEEEecCCCeeee
Confidence            999999763    678888777888888889999999999999999999999999998875433 2 2578999999999


Q ss_pred             CEEEEccCCcCCChhhhhcCCccc--CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHH
Q 014997          223 DTIVIGIGAKPTVSPFERVGLNSS--VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL  300 (414)
Q Consensus       223 D~vi~a~G~~p~~~~l~~~gl~~~--~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i  300 (414)
                      |+|++|+|-.||+++++..||+.+  -|++.||..++.. .|||++||++.+.+...|. .|++||.+|...|+.|+.||
T Consensus       439 D~vVvavG~ePN~ela~~sgLeiD~~lGGfrvnaeL~ar-~NvwvAGdaacF~D~~LGr-RRVehhdhavvSGRLAGENM  516 (659)
T KOG1346|consen  439 DLVVVAVGEEPNSELAEASGLEIDEKLGGFRVNAELKAR-ENVWVAGDAACFEDGVLGR-RRVEHHDHAVVSGRLAGENM  516 (659)
T ss_pred             eeEEEEecCCCchhhcccccceeecccCcEEeeheeecc-cceeeecchhhhhcccccc-eeccccccceeeceeccccc
Confidence            999999999999999999999875  4899999999874 8999999999999888776 46899999999999999999


Q ss_pred             hcCCCCCCCCCCceeeeccCCCCC---------CcceeeeEeecCC------------C----c----------------
Q 014997          301 LSAQTHTYDYLPYFYSRVFEYEGS---------PRKVWWQFFGDNV------------G----E----------------  339 (414)
Q Consensus       301 ~~~~~~~~~~~p~~~~~~~~~~g~---------~~~~~~~~~G~~~------------~----~----------------  339 (414)
                      .+ ...+|....+||++.-..-|.         .-.+.+  +-.+.            +    +                
T Consensus       517 tg-Aakpy~hqsmFWsdlgP~igyeaIGlvDSSLpTVgV--fA~p~s~~~~~~~se~sdt~v~~~s~s~s~ss~~~~~~s  593 (659)
T KOG1346|consen  517 TG-AAKPYKHQSMFWSDLGPEIGYEAIGLVDSSLPTVGV--FALPSSATRVDQLSESSDTDVPETSTSSSQSSKSDAGAS  593 (659)
T ss_pred             cc-ccCCccccceeeeccCcccccceeeecccCCCccee--eeccccccchhhhhhccCCCCccccccccccccccCCcC
Confidence            96 556888888999874321110         000000  00000            0    0                


Q ss_pred             --EE----EEcCCCCcEEEEEEeCCEEEEEEeecCChHHhhHHHHHHhCCCCCCh
Q 014997          340 --TI----EIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDK  388 (414)
Q Consensus       340 --~~----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~  388 (414)
                        -+    ..++-.+|-+.||++|++|||+++ .|--..+...|++|..+...++
T Consensus       594 ~~~v~~~P~e~~~ygKgViFYl~d~~iVGilL-wN~Fnr~~~AR~II~d~kk~dd  647 (659)
T KOG1346|consen  594 QDGVTCDPDEAGNYGKGVIFYLKDDKIVGILL-WNLFNRIGLARTIINDNKKYDD  647 (659)
T ss_pred             CCCCccCcccccccCceEEEEecCCcEEEEEe-hhhhccchhhHHHhccccchhh
Confidence              00    000001356789999999999997 7877788999999988777665

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=100.00  E-value=2.4e-37  Score=304.40  Aligned_cols=320  Identities=26%  Similarity=0.416  Sum_probs=243.6

Q ss_pred             hHHHHcCCeEEcCCcEEEEeCCCCEEEeCC--CcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhc
Q 014997           54 EWYKEKGIEMIYQDPVTSIDIEKQTLITNS--GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE  131 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~~id~~~~~V~~~~--g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~  131 (414)
                      .++++++|+++.| +..-++  .++|.+.+  .+++++|++|||||++|..+| .++.  ++...+.    .........
T Consensus       102 ~l~~~~~V~vi~G-~a~f~~--~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~-~~~~--~~~~~~~----s~~~l~~~~  171 (454)
T COG1249         102 GLLKKNGVDVIRG-EARFVD--PHTVEVTGEDKETITADNIIIATGSRPRIPP-GPGI--DGARILD----SSDALFLLE  171 (454)
T ss_pred             HHHhhCCCEEEEE-EEEECC--CCEEEEcCCCceEEEeCEEEEcCCCCCcCCC-CCCC--CCCeEEe----chhhccccc
Confidence            3455679999987 454444  56777765  478999999999999997544 3443  3332222    222122225


Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEE
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  211 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~  211 (414)
                      -+++++|||||++|+|+|..++++|.+||++++.+++++ .+|+++++.+.+.|++.|+++++++.+++++..+++  ..
T Consensus       172 lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp-~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~--v~  248 (454)
T COG1249         172 LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP-GEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDG--VL  248 (454)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC-cCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCe--EE
Confidence            689999999999999999999999999999999999998 589999999999999999999999999999866444  46


Q ss_pred             EEeCCCc--EEecCEEEEccCCcCCCh--hhhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccH
Q 014997          212 VKLEDGS--TIDADTIVIGIGAKPTVS--PFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHV  286 (414)
Q Consensus       212 v~~~~g~--~i~~D~vi~a~G~~p~~~--~l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~  286 (414)
                      +.+++|+  ++++|.+++|+|++||++  -|++.|++.+ +|+|.||+.++|++|||||+|||+..+.          ..
T Consensus       249 v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~Tnvp~IyA~GDV~~~~~----------La  318 (454)
T COG1249         249 VTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTTNVPGIYAIGDVIGGPM----------LA  318 (454)
T ss_pred             EEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCccccCCCCEEEeeccCCCcc----------cH
Confidence            7777776  799999999999999998  3799999986 4899999888889999999999987654          23


Q ss_pred             HHHHHHHHHHHHHHhcCCC--CCCCCCCceeeeccCCCCCCcceeeeEeecCCCcE------EEEc--CC----------
Q 014997          287 DHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGET------IEIG--NF----------  346 (414)
Q Consensus       287 ~~A~~~a~~aa~~i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~~------~~~~--~~----------  346 (414)
                      ..|..+|++|+.|+++...  ..+..+|+   .+|..+-      +..+|..+.+.      +..+  .+          
T Consensus       319 h~A~~eg~iaa~~i~g~~~~~~d~~~iP~---~ift~Pe------ia~VGlte~ea~~~g~~~~~~~~~f~~~~ra~~~~  389 (454)
T COG1249         319 HVAMAEGRIAAENIAGGKRTPIDYRLIPS---VVFTDPE------IASVGLTEEEAKEAGIDYKVGKFPFAANGRAITMG  389 (454)
T ss_pred             hHHHHHHHHHHHHHhCCCCCcCcccCCCE---EEECCCc------ceeeeCCHHHHHhcCCceEEEEeecccchhHHhcc
Confidence            3599999999999996222  24667887   4555542      44556543211      1111  01          


Q ss_pred             -CCcEEEEEEe--CCEEEEEEeecCChHHhhHHHHH-HhCCCCCChhh--hcCCCcHHHHHHHHh
Q 014997          347 -DPKIATFWID--SGKLKGVLVESGSPEEFQLLPTL-ARSQPFVDKAK--LQQASSVEEALEIAR  405 (414)
Q Consensus       347 -~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~l-~~~~~~~~~~~--~~~~~~~~~~~~~~~  405 (414)
                       ..-|.++.++  +++|+|++++..++.++...-.+ ++.+.+++...  ...||+++|++.+|+
T Consensus       390 ~~~G~~Klv~d~~t~~IlGahivg~~A~ElI~~~~~a~~~g~t~~~~~~~i~~HPT~sE~~~~a~  454 (454)
T COG1249         390 ETDGFVKLVVDKETGRILGAHIVGPGASELINEIALAIEMGATAEDLALTIHAHPTLSEALKEAA  454 (454)
T ss_pred             CCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCCCCCCChHHHHHHhC
Confidence             1236677775  48999999988889888776664 57777666633  789999999999874

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=100.00  E-value=6e-38  Score=301.25  Aligned_cols=283  Identities=23%  Similarity=0.349  Sum_probs=225.2

Q ss_pred             CCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcC-CeEEcCCcEEEEeCCCCEEEe
Q 014997            3 DGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKG-IEMIYQDPVTSIDIEKQTLIT   81 (414)
Q Consensus         3 ~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~-i~~~~~~~V~~id~~~~~V~~   81 (414)
                      +-+||+|++.++++|. |.|.. ...|.-.. .++           .....+.+++.+ ++++++ +|++||+++++|++
T Consensus        28 ~~~itLVd~~~~hl~~-plL~e-va~g~l~~-~~i-----------~~p~~~~~~~~~~v~~~~~-~V~~ID~~~k~V~~   92 (405)
T COG1252          28 DVEITLVDRRDYHLFT-PLLYE-VATGTLSE-SEI-----------AIPLRALLRKSGNVQFVQG-EVTDIDRDAKKVTL   92 (405)
T ss_pred             CCcEEEEeCCCccccc-hhhhh-hhcCCCCh-hhe-----------eccHHHHhcccCceEEEEE-EEEEEcccCCEEEe
Confidence            4689999999998886 77765 66663222 222           234556666455 999985 99999999999999


Q ss_pred             CCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhc--------CC-----CeEEEECCChHHHHH
Q 014997           82 NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE--------KA-----KKVVVVGGGYIGMEV  148 (414)
Q Consensus        82 ~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~--------~~-----~~vvVvGgG~~g~e~  148 (414)
                      +++..+.||+||||+|+.+.. +.++|. .+..+.+++++++.+++..+.        ..     -+++|+|||++|+|+
T Consensus        93 ~~~~~i~YD~LVvalGs~~~~-fgi~G~-~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVEl  170 (405)
T COG1252          93 ADLGEISYDYLVVALGSETNY-FGIPGA-AEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVEL  170 (405)
T ss_pred             CCCccccccEEEEecCCcCCc-CCCCCH-HHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHH
Confidence            998889999999999999864 444553 234567889999987766542        11     269999999999999


Q ss_pred             HHHHHhCC-------------CcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeC
Q 014997          149 AAAAVGWK-------------LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE  215 (414)
Q Consensus       149 A~~l~~~g-------------~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~  215 (414)
                      |..|+.+-             .+|+++++.+++|+ .++++++...++.|+++||++++++.|++++++      .|.++
T Consensus       171 AgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp-~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~------~v~~~  243 (405)
T COG1252         171 AGELAERLHRLLKKFRVDPSELRVILVEAGPRILP-MFPPKLSKYAERALEKLGVEVLLGTPVTEVTPD------GVTLK  243 (405)
T ss_pred             HHHHHHHHHHHhhhhcCCccccEEEEEccCchhcc-CCCHHHHHHHHHHHHHCCCEEEcCCceEEECCC------cEEEc
Confidence            99986531             38999999999998 699999999999999999999999999999865      68888


Q ss_pred             CCc-EEecCEEEEccCCcCCChhhhh-cCCccc-CCCEEEcCCCCC-CCCcEEEEccccccCCccCCcccccccHHHHHH
Q 014997          216 DGS-TIDADTIVIGIGAKPTVSPFER-VGLNSS-VGGIQVDGQFRT-RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ  291 (414)
Q Consensus       216 ~g~-~i~~D~vi~a~G~~p~~~~l~~-~gl~~~-~g~i~vd~~~~t-~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~  291 (414)
                      +|. +|+||++||++|.+++ +++++ .+++.+ .|++.||+++++ ++|+|||+|||+.+...   . ......+.|.+
T Consensus       244 ~g~~~I~~~tvvWaaGv~a~-~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~---~-p~P~tAQ~A~Q  318 (405)
T COG1252         244 DGEEEIPADTVVWAAGVRAS-PLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDP---R-PVPPTAQAAHQ  318 (405)
T ss_pred             cCCeeEecCEEEEcCCCcCC-hhhhhcChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCC---C-CCCChhHHHHH
Confidence            887 4999999999999998 78888 577766 589999999997 99999999999998764   1 11235677999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCcee
Q 014997          292 SAQHCIKALLSAQTHTYDYLPYFY  315 (414)
Q Consensus       292 ~a~~aa~~i~~~~~~~~~~~p~~~  315 (414)
                      ||..+|+||..... ..+..||.+
T Consensus       319 qg~~~a~ni~~~l~-g~~l~~f~y  341 (405)
T COG1252         319 QGEYAAKNIKARLK-GKPLKPFKY  341 (405)
T ss_pred             HHHHHHHHHHHHhc-CCCCCCCcc
Confidence            99999999985332 234445543

>PLN02507 glutathione reductase

Probab=100.00  E-value=2e-36  Score=306.10  Aligned_cols=320  Identities=20%  Similarity=0.287  Sum_probs=241.1

Q ss_pred             HHHcCCeEEcCCcEEEEeCCCCEEEeCCCc--EEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCC
Q 014997           56 YKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA  133 (414)
Q Consensus        56 ~~~~~i~~~~~~~V~~id~~~~~V~~~~g~--~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~  133 (414)
                      +...+|+++.+ ++..+|+...+|++.+|+  .+.||+||||||++|.. |.++|.+     ...+.+++..+.   ..+
T Consensus       134 l~~~gV~~i~g-~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~p~~-p~ipG~~-----~~~~~~~~~~l~---~~~  203 (499)
T PLN02507        134 LANAGVKLYEG-EGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQR-PNIPGKE-----LAITSDEALSLE---ELP  203 (499)
T ss_pred             HHhCCcEEEEE-EEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCCCCC-CCCCCcc-----ceechHHhhhhh---hcC
Confidence            44579999986 888899988888888886  58999999999999864 4444422     112334443332   346


Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEE
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK  213 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~  213 (414)
                      ++++|||+|++|+|+|..|+++|.+|+++++.+++++ .+++++...+.+.|++.||++++++.|++++..+++  ..+.
T Consensus       204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~-~~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~--~~v~  280 (499)
T PLN02507        204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLR-GFDDEMRAVVARNLEGRGINLHPRTNLTQLTKTEGG--IKVI  280 (499)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCc-ccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCe--EEEE
Confidence            8999999999999999999999999999999998887 489999999999999999999999999999754333  2567


Q ss_pred             eCCCcEEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHH
Q 014997          214 LEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHAR  290 (414)
Q Consensus       214 ~~~g~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~  290 (414)
                      +.+|+++++|.|++++|++||+++  +++++++.+ +|+|.||+++||+.|||||+|||+....          ....|.
T Consensus       281 ~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~Ts~p~IyAiGDv~~~~~----------l~~~A~  350 (499)
T PLN02507        281 TDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYSRTNIPSIWAIGDVTNRIN----------LTPVAL  350 (499)
T ss_pred             ECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCCcCCCCCEEEeeEcCCCCc----------cHHHHH
Confidence            788889999999999999999986  578888775 5779999999999999999999986432          455799


Q ss_pred             HHHHHHHHHHhcCCCC--CCCCCCceeeeccCCCCCCcceeeeEeecCCC--------cE-EE-----------EcCCCC
Q 014997          291 QSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--------ET-IE-----------IGNFDP  348 (414)
Q Consensus       291 ~~a~~aa~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~--------~~-~~-----------~~~~~~  348 (414)
                      .||+.+++||+++...  .+..+|+   ..|+++-      +..+|..+.        .. +.           .+....
T Consensus       351 ~qg~~aa~ni~g~~~~~~~~~~~p~---~if~~p~------ia~vGlte~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (499)
T PLN02507        351 MEGTCFAKTVFGGQPTKPDYENVAC---AVFCIPP------LSVVGLSEEEAVEQAKGDILVFTSSFNPMKNTISGRQEK  421 (499)
T ss_pred             HHHHHHHHHHcCCCCCcCCCCCCCe---EEECCCc------cEEEeCCHHHHHhccCCCEEEEEeecCccccccccCCCC
Confidence            9999999999874332  2334453   4555431      333443211        00 00           011112


Q ss_pred             cEEEEEEe--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCChh-h-hcCCCcHHHHHHHHhcC
Q 014997          349 KIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDKA-K-LQQASSVEEALEIARAA  407 (414)
Q Consensus       349 ~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~  407 (414)
                      -+.++.++  +++|+|+++++.++.++... ..+|+.+.+++.- . +..||+++|.+..++..
T Consensus       422 g~~Kli~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~E~~~~~~~~  485 (499)
T PLN02507        422 TVMKLIVDAETDKVLGASMCGPDAPEIMQGIAVALKCGATKAQFDSTVGIHPSAAEEFVTMRSV  485 (499)
T ss_pred             EEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcCcCCCChHHHHHHHHhh
Confidence            26667664  58999999877777666544 4567899888873 3 68999999999987633

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=100.00  E-value=4.8e-37  Score=305.66  Aligned_cols=283  Identities=20%  Similarity=0.258  Sum_probs=221.3

Q ss_pred             CCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCCCEEEe-
Q 014997            3 DGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLIT-   81 (414)
Q Consensus         3 ~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~-   81 (414)
                      +.+||||+++++++| +|.|+. ++.+.. ...++           .......+...+++++. .+|+.||++++.|.+ 
T Consensus        33 ~~~ItlI~~~~~~~~-~~~l~~-~~~g~~-~~~~~-----------~~~~~~~~~~~~~~~i~-~~V~~Id~~~~~v~~~   97 (424)
T PTZ00318         33 KYNITVISPRNHMLF-TPLLPQ-TTTGTL-EFRSI-----------CEPVRPALAKLPNRYLR-AVVYDVDFEEKRVKCG   97 (424)
T ss_pred             CCeEEEEcCCCCcch-hhhHHH-hcccCC-ChHHh-----------HHHHHHHhccCCeEEEE-EEEEEEEcCCCEEEEe
Confidence            468999999999877 487775 655522 22222           11234456667899987 599999999999988 


Q ss_pred             ---------CCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhc-----------------CCCe
Q 014997           82 ---------NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE-----------------KAKK  135 (414)
Q Consensus        82 ---------~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~-----------------~~~~  135 (414)
                               ++|.+++||+||||||+.+.. +.+||.. +.++.++++.++..+++.+.                 ..++
T Consensus        98 ~~~~~~~~~~~g~~i~yD~LViAtGs~~~~-~~ipG~~-e~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  175 (424)
T PTZ00318         98 VVSKSNNANVNTFSVPYDKLVVAHGARPNT-FNIPGVE-ERAFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLH  175 (424)
T ss_pred             cccccccccCCceEecCCEEEECCCcccCC-CCCCCHH-HcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCE
Confidence                     567789999999999999864 4456643 34567788888776654331                 1248


Q ss_pred             EEEECCChHHHHHHHHHHh--------------CCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEE
Q 014997          136 VVVVGGGYIGMEVAAAAVG--------------WKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNL  201 (414)
Q Consensus       136 vvVvGgG~~g~e~A~~l~~--------------~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i  201 (414)
                      ++|||||++|+|+|..|+.              .+.+|+++++.+++++ .+++.+++.+++.|+++||++++++.|+++
T Consensus       176 vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~-~~~~~~~~~~~~~L~~~gV~v~~~~~v~~v  254 (424)
T PTZ00318        176 FVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLG-SFDQALRKYGQRRLRRLGVDIRTKTAVKEV  254 (424)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccc-cCCHHHHHHHHHHHHHCCCEEEeCCeEEEE
Confidence            9999999999999999875              3689999999999997 589999999999999999999999999999


Q ss_pred             EecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhcCCccc-CCCEEEcCCCC-CCCCcEEEEccccccCCccCCc
Q 014997          202 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFR-TRMPGIFAIGDVAAFPLKMYDR  279 (414)
Q Consensus       202 ~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~-~g~i~vd~~~~-t~~~~IyA~GD~a~~~~~~~~~  279 (414)
                      ..+      .+.+++|+++++|.+|+++|.+|+ +++++++++.+ +|+|.||+++| +++|||||+|||+..+....  
T Consensus       255 ~~~------~v~~~~g~~i~~d~vi~~~G~~~~-~~~~~~~l~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~~~~~~--  325 (424)
T PTZ00318        255 LDK------EVVLKDGEVIPTGLVVWSTGVGPG-PLTKQLKVDKTSRGRISVDDHLRVKPIPNVFALGDCAANEERPL--  325 (424)
T ss_pred             eCC------EEEECCCCEEEccEEEEccCCCCc-chhhhcCCcccCCCcEEeCCCcccCCCCCEEEEeccccCCCCCC--
Confidence            743      577889999999999999999998 68888888764 68999999999 59999999999998754221  


Q ss_pred             ccccccHHHHHHHHHHHHHHHhcCCCCCCCCCCcee
Q 014997          280 TARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFY  315 (414)
Q Consensus       280 ~~~~~~~~~A~~~a~~aa~~i~~~~~~~~~~~p~~~  315 (414)
                         ...+..|.+||..+|+||.+.........||.+
T Consensus       326 ---~~~~~~A~~qg~~~A~ni~~~l~g~~~~~~~~~  358 (424)
T PTZ00318        326 ---PTLAQVASQQGVYLAKEFNNELKGKPMSKPFVY  358 (424)
T ss_pred             ---CCchHHHHHHHHHHHHHHHHHhcCCCCCCCCee
Confidence               125678999999999999864322223456654

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=100.00  E-value=2.8e-35  Score=296.72  Aligned_cols=326  Identities=18%  Similarity=0.310  Sum_probs=243.9

Q ss_pred             hHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCc--EEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhc
Q 014997           54 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE  131 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~--~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~  131 (414)
                      +++++.+|+++.+ ++..++....+|.+.+|+  ++.||+||||||++|..+ +.++...+++++      +..+.....
T Consensus       102 ~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p-~~~~~~~~~v~~------~~~~~~~~~  173 (461)
T PRK05249        102 GQYERNRVDLIQG-RARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRP-PDVDFDHPRIYD------SDSILSLDH  173 (461)
T ss_pred             HHHHHCCCEEEEE-EEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCC-CCCCCCCCeEEc------HHHhhchhh
Confidence            4466789999986 677777766667776764  799999999999998754 334433344433      223333334


Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEE
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  211 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~  211 (414)
                      .+++++|||+|++|+|+|..|+++|.+|+++++.+++++ .+++++...+.+.+++.||++++++.+++++..+++  ..
T Consensus       174 ~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-~~d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~--~~  250 (461)
T PRK05249        174 LPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLS-FLDDEISDALSYHLRDSGVTIRHNEEVEKVEGGDDG--VI  250 (461)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCC-cCCHHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCe--EE
Confidence            579999999999999999999999999999999999997 589999999999999999999999999999854332  24


Q ss_pred             EEeCCCcEEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHH
Q 014997          212 VKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDH  288 (414)
Q Consensus       212 v~~~~g~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~  288 (414)
                      +.+.+|+++++|.|++|+|.+||+++  ++++++..+ +|+|.||+++||+.|+|||+|||+..+.          ....
T Consensus       251 v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyAiGD~~~~~~----------~~~~  320 (461)
T PRK05249        251 VHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQTAVPHIYAVGDVIGFPS----------LASA  320 (461)
T ss_pred             EEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCcccCCCCEEEeeecCCCcc----------cHhH
Confidence            56778889999999999999999885  577788764 5779999999999999999999986432          3556


Q ss_pred             HHHHHHHHHHHHhcCCC-CCCCCCCceeeeccCCCCCCcceeeeEeecCCC--------------------cEEEEcCCC
Q 014997          289 ARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--------------------ETIEIGNFD  347 (414)
Q Consensus       289 A~~~a~~aa~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~--------------------~~~~~~~~~  347 (414)
                      |..+|+.+|.||++... ..+..+|..   +|..+-      +..+|....                    .....+. .
T Consensus       321 A~~~g~~aa~~i~g~~~~~~~~~~p~~---i~~~p~------ia~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~-~  390 (461)
T PRK05249        321 SMDQGRIAAQHAVGEATAHLIEDIPTG---IYTIPE------ISSVGKTEQELTAAKVPYEVGRARFKELARAQIAGD-N  390 (461)
T ss_pred             HHHHHHHHHHHHcCCCcccccCCCCeE---EECCCc------ceEecCCHHHHHHcCCCeEEEEEccccccceeecCC-C
Confidence            99999999999996432 233445553   444321      333443321                    0011111 1


Q ss_pred             CcEEEEEEe--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCChh-h-hcCCCcHHHHHHHHhcCCCc
Q 014997          348 PKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDKA-K-LQQASSVEEALEIARAALPV  410 (414)
Q Consensus       348 ~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~  410 (414)
                      .-+.++.++  +++|+|+++++.++.++... .-+|+.+.+++.- . ...||+++|++..|++.+.+
T Consensus       391 ~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~~~~  458 (461)
T PRK05249        391 VGMLKILFHRETLEILGVHCFGERATEIIHIGQAIMEQKGTIEYFVNTTFNYPTMAEAYRVAALDGLN  458 (461)
T ss_pred             CcEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHHHHHHHHHHHhc
Confidence            236666664  58999999877777776654 4467888888873 3 67899999999999876544

>PRK06370 mercuric reductase; Validated

Probab=100.00  E-value=1.9e-35  Score=297.85  Aligned_cols=325  Identities=21%  Similarity=0.284  Sum_probs=237.6

Q ss_pred             hHHHHc-CCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcC
Q 014997           54 EWYKEK-GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK  132 (414)
Q Consensus        54 ~~~~~~-~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~  132 (414)
                      .++++. ||+++.++.+   ..+.++|.+ +++++.||+||||||++|+. |.++|.+..++++..+      +......
T Consensus       102 ~~~~~~~gv~v~~g~~~---~~~~~~v~v-~~~~~~~d~lViATGs~p~~-p~i~G~~~~~~~~~~~------~~~~~~~  170 (463)
T PRK06370        102 QWLRGLEGVDVFRGHAR---FESPNTVRV-GGETLRAKRIFINTGARAAI-PPIPGLDEVGYLTNET------IFSLDEL  170 (463)
T ss_pred             HHHhcCCCcEEEEEEEE---EccCCEEEE-CcEEEEeCEEEEcCCCCCCC-CCCCCCCcCceEcchH------hhCcccc
Confidence            455666 9999987543   245677777 45679999999999999874 5566655444443322      2222235


Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEE
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV  212 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v  212 (414)
                      +++++|||+|++|+|+|..|+++|.+|+++++.+++++. +++++.+.+.+.+++.||++++++.|.+++..+++....+
T Consensus       171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~  249 (463)
T PRK06370        171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR-EDEDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGL  249 (463)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc-cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEE
Confidence            799999999999999999999999999999999999874 7889999999999999999999999999986533332223


Q ss_pred             EeC-CCcEEecCEEEEccCCcCCCh-h-hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHH
Q 014997          213 KLE-DGSTIDADTIVIGIGAKPTVS-P-FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDH  288 (414)
Q Consensus       213 ~~~-~g~~i~~D~vi~a~G~~p~~~-~-l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~  288 (414)
                      ... ++.++++|.||+|+|.+|+++ + +++.|+..+ +|+|.||+++||+.|+|||+|||+..+.          ....
T Consensus       250 ~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~t~~~~IyAiGD~~~~~~----------~~~~  319 (463)
T PRK06370        250 DCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRTTNPGIYAAGDCNGRGA----------FTHT  319 (463)
T ss_pred             EeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCcCCCCCEEEeeecCCCcc----------cHHH
Confidence            333 345799999999999999988 4 677888765 5779999999999999999999987532          3456


Q ss_pred             HHHHHHHHHHHHhcCCCCCC--CCCCceeeeccCCCCCCcceeeeEeecCCCc-------E--EEE--c--------CCC
Q 014997          289 ARQSAQHCIKALLSAQTHTY--DYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T--IEI--G--------NFD  347 (414)
Q Consensus       289 A~~~a~~aa~~i~~~~~~~~--~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~--~~~--~--------~~~  347 (414)
                      |..||+.+|+||++.....+  ..+|+.   .|..+      .+..+|....+       .  ...  .        +..
T Consensus       320 A~~~g~~aa~ni~~~~~~~~~~~~~p~~---~~~~p------~ia~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~  390 (463)
T PRK06370        320 AYNDARIVAANLLDGGRRKVSDRIVPYA---TYTDP------PLARVGMTEAEARKSGRRVLVGTRPMTRVGRAVEKGET  390 (463)
T ss_pred             HHHHHHHHHHHHhCCCCCCcccccCCeE---EEcCC------CcEeeeCCHHHHHHcCCCeEEEEEecCcchhHHhcCCC
Confidence            89999999999997433333  334542   23221      13445543210       0  000  0        011


Q ss_pred             CcEEEEEEe--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCChhh--hcCCCcHHHHHHHHhcCCC
Q 014997          348 PKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDKAK--LQQASSVEEALEIARAALP  409 (414)
Q Consensus       348 ~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  409 (414)
                      .-+.++.++  +++|+|+++++..+.++... ..+|+.+.++++-.  +..||+++|++.+|++.+.
T Consensus       391 ~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~a~~~~~  457 (463)
T PRK06370        391 QGFMKVVVDADTDRILGATILGVHGDEMIHEILDAMYAGAPYTTLSRAIHIHPTVSELIPTLAQALR  457 (463)
T ss_pred             CEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCChHHHHHHHHHhhh
Confidence            236677765  69999999877777766554 45679999988833  6799999999999998764

>PRK07846 mycothione reductase; Reviewed

Probab=100.00  E-value=3.7e-35  Score=293.86  Aligned_cols=319  Identities=20%  Similarity=0.273  Sum_probs=235.7

Q ss_pred             HHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCCe
Q 014997           56 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKK  135 (414)
Q Consensus        56 ~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~  135 (414)
                      +++.||+++.| ++.-+  +.++|++.+|+++.||+||||||++|+ .|++++.+...+   .+.++...+.   ..+++
T Consensus        99 ~~~~~v~~~~g-~a~~~--~~~~V~v~~g~~~~~d~lViATGs~p~-~p~i~g~~~~~~---~~~~~~~~l~---~~~~~  168 (451)
T PRK07846         99 RDTPNIDVYRG-HARFI--GPKTLRTGDGEEITADQVVIAAGSRPV-IPPVIADSGVRY---HTSDTIMRLP---ELPES  168 (451)
T ss_pred             hhhCCcEEEEE-EEEEe--cCCEEEECCCCEEEeCEEEEcCCCCCC-CCCCCCcCCccE---EchHHHhhhh---hcCCe
Confidence            56789999987 44444  578899988888999999999999986 455555332222   2334443332   34789


Q ss_pred             EEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeC
Q 014997          136 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE  215 (414)
Q Consensus       136 vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~  215 (414)
                      ++|||+|++|+|+|..|+++|.+|+++++.+++++ .+++++.+.+.+.+ +.||++++++++++++.++ +. ..+.+.
T Consensus       169 vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~-~~d~~~~~~l~~l~-~~~v~i~~~~~v~~i~~~~-~~-v~v~~~  244 (451)
T PRK07846        169 LVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLR-HLDDDISERFTELA-SKRWDVRLGRNVVGVSQDG-SG-VTLRLD  244 (451)
T ss_pred             EEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc-ccCHHHHHHHHHHH-hcCeEEEeCCEEEEEEEcC-CE-EEEEEC
Confidence            99999999999999999999999999999999886 58889888877654 5689999999999997543 22 246777


Q ss_pred             CCcEEecCEEEEccCCcCCChhh--hhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHH
Q 014997          216 DGSTIDADTIVIGIGAKPTVSPF--ERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQS  292 (414)
Q Consensus       216 ~g~~i~~D~vi~a~G~~p~~~~l--~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~  292 (414)
                      +|++++||.|++++|.+|+++++  ++.+++.+ +|+|.||+++||+.|||||+|||+..+.          ....|..|
T Consensus       245 ~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~Ts~p~IyA~GD~~~~~~----------l~~~A~~~  314 (451)
T PRK07846        245 DGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRTSAEGVFALGDVSSPYQ----------LKHVANHE  314 (451)
T ss_pred             CCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCcccCCCCEEEEeecCCCcc----------ChhHHHHH
Confidence            88899999999999999999884  67788874 5779999999999999999999997532          33458999


Q ss_pred             HHHHHHHHhcCCC---CCCCCCCceeeeccCCCCCCcceeeeEeecCCCc-------EEE-------------EcCCCCc
Q 014997          293 AQHCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TIE-------------IGNFDPK  349 (414)
Q Consensus       293 a~~aa~~i~~~~~---~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~~~-------------~~~~~~~  349 (414)
                      |+.+++||++...   ..+..+|+.   .|..+      .+..+|....+       ...             .++ ..-
T Consensus       315 g~~~a~ni~~~~~~~~~~~~~~p~~---if~~p------~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~-~~g  384 (451)
T PRK07846        315 ARVVQHNLLHPDDLIASDHRFVPAA---VFTHP------QIASVGLTENEARAAGLDITVKVQNYGDVAYGWAMED-TTG  384 (451)
T ss_pred             HHHHHHHHcCCCCccccCCCCCCeE---EECCC------CcEeEeCCHHHHHhcCCCEEEEEEecCcchhhhhCCC-Cce
Confidence            9999999996422   234556654   33321      13344433211       000             011 122


Q ss_pred             EEEEEEe--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCChh-h--hcCCCcHHHHHHHHhcCC
Q 014997          350 IATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDKA-K--LQQASSVEEALEIARAAL  408 (414)
Q Consensus       350 ~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~  408 (414)
                      +.++.++  +++|+|+++++.++.++... ..+|+.+.+++.- .  ...||+++|++.+|++.+
T Consensus       385 ~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e~~~~a~~~~  449 (451)
T PRK07846        385 FVKLIADRDTGRLLGAHIIGPQASTLIQPLIQAMSFGLDAREMARGQYWIHPALPEVVENALLGL  449 (451)
T ss_pred             EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCCCccCCcHHHHHHHHHHhc
Confidence            5666664  59999999877777666544 4567899888873 3  358999999999998654

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=100.00  E-value=4.1e-35  Score=295.08  Aligned_cols=325  Identities=22%  Similarity=0.315  Sum_probs=239.5

Q ss_pred             hHHHHcCCeEEcCCcEEEEe----CCCCEEEeCCCc--EEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHH
Q 014997           54 EWYKEKGIEMIYQDPVTSID----IEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALI  127 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~~id----~~~~~V~~~~g~--~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~  127 (414)
                      +++++++|+++.+ +++.++    +....|.+.+|+  ++.||+||||||++|..+|. ++.+.+.+++..++.+.    
T Consensus       100 ~~l~~~gV~~~~g-~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~~p~-~~~~~~~v~~~~~~~~~----  173 (466)
T PRK07845        100 ARLEREGVRVIAG-RGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPT-AEPDGERILTWRQLYDL----  173 (466)
T ss_pred             HHHHHCCCEEEEE-EEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCCCCC-CCCCCceEEeehhhhcc----
Confidence            5567789999986 676633    333455566775  79999999999999864432 22223445554433322    


Q ss_pred             HhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCC
Q 014997          128 SSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG  207 (414)
Q Consensus       128 ~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~  207 (414)
                        ...+++++|||+|.+|+|+|..|+++|.+||++++.+++++. +++++...+.+.|+++||++++++.+.+++..+++
T Consensus       174 --~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~  250 (466)
T PRK07845        174 --DELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG-EDADAAEVLEEVFARRGMTVLKRSRAESVERTGDG  250 (466)
T ss_pred             --cccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC-CCHHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCE
Confidence              124689999999999999999999999999999999999985 78899999999999999999999999999754333


Q ss_pred             cEEEEEeCCCcEEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccc
Q 014997          208 RVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVE  284 (414)
Q Consensus       208 ~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~  284 (414)
                       + .+.+.+|+++++|.|++++|.+||++.  +++++++.+ +|+|.||+++||+.|||||+|||+..+.          
T Consensus       251 -~-~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~Ts~~~IyA~GD~~~~~~----------  318 (466)
T PRK07845        251 -V-VVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRTSVPGIYAAGDCTGVLP----------  318 (466)
T ss_pred             -E-EEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCcccCCCCEEEEeeccCCcc----------
Confidence             2 466778889999999999999999885  578888865 5779999999999999999999997432          


Q ss_pred             cHHHHHHHHHHHHHHHhcCCCCC--CCCCCceeeeccCCCCCCcceeeeEeecCCC-------c--EE-----------E
Q 014997          285 HVDHARQSAQHCIKALLSAQTHT--YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------E--TI-----------E  342 (414)
Q Consensus       285 ~~~~A~~~a~~aa~~i~~~~~~~--~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~--~~-----------~  342 (414)
                      .+..|..||..++.|+++....+  +..+|+   ..|+.+-      +..+|....       +  ..           .
T Consensus       319 l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~---~vf~~p~------~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~  389 (466)
T PRK07845        319 LASVAAMQGRIAMYHALGEAVSPLRLKTVAS---NVFTRPE------IATVGVSQAAIDSGEVPARTVMLPLATNPRAKM  389 (466)
T ss_pred             chhHHHHHHHHHHHHHcCCCCCcCCCCCCCE---EEeCCCc------ceeecCCHHHHHhCCCceEEEEEecccCchhhh
Confidence            46679999999999999743222  333443   3443210      233333211       0  00           0


Q ss_pred             EcCCCCcEEEEEEe--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCCh-hh-hcCCCcHHHHHHHHhcCCC
Q 014997          343 IGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDK-AK-LQQASSVEEALEIARAALP  409 (414)
Q Consensus       343 ~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~  409 (414)
                      .+. ..-|.++.++  +++|+|+++++.++.++... ..+|+.+.+++. .. +..||++.|.+..+++.+.
T Consensus       390 ~~~-~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~  460 (466)
T PRK07845        390 SGL-RDGFVKLFCRPGTGVVIGGVVVAPRASELILPIALAVQNRLTVDDLAQTFTVYPSLSGSITEAARRLM  460 (466)
T ss_pred             cCC-CceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCcCCCCCHHHHHHHHHHHhh
Confidence            111 1236666664  68999999877777666544 446788888887 23 6789999999999988654

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=100.00  E-value=3.1e-35  Score=294.72  Aligned_cols=318  Identities=19%  Similarity=0.288  Sum_probs=235.4

Q ss_pred             hHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCC
Q 014997           54 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA  133 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~  133 (414)
                      ..+++.||+++.+ ++..++++...+. .+|+.+.||+||||||++|.. |.++|.+     ...+..+...+   ...+
T Consensus        98 ~~l~~~gV~~~~g-~~~~v~~~~v~v~-~~g~~~~~d~lIiATGs~p~~-p~i~G~~-----~~~~~~~~~~l---~~~~  166 (446)
T TIGR01424        98 RLLANAGVELLEG-RARLVGPNTVEVL-QDGTTYTAKKILIAVGGRPQK-PNLPGHE-----LGITSNEAFHL---PTLP  166 (446)
T ss_pred             HHHHhCCcEEEEE-EEEEecCCEEEEe-cCCeEEEcCEEEEecCCcCCC-CCCCCcc-----ceechHHhhcc---cccC
Confidence            4466789999986 8888887644443 467789999999999999864 4444432     11122222222   2347


Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEE
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK  213 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~  213 (414)
                      ++++|||+|++|+|+|..|+++|.+|+++++.+++++. +++++...+.+.+++.||++++++.+++++..+++  ..+.
T Consensus       167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~  243 (446)
T TIGR01424       167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRG-FDDDMRALLARNMEGRGIRIHPQTSLTSITKTDDG--LKVT  243 (446)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcc-cCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe--EEEE
Confidence            89999999999999999999999999999999988874 78999999999999999999999999999754333  3566


Q ss_pred             eCCCcEEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHH
Q 014997          214 LEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHAR  290 (414)
Q Consensus       214 ~~~g~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~  290 (414)
                      +.+|+++++|.+|+|+|.+|+++.  +++.+++.+ +|+|.||+++||+.|||||+|||+....          ....|.
T Consensus       244 ~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~----------l~~~A~  313 (446)
T TIGR01424       244 LSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRTSIPSIYAVGDVTDRIN----------LTPVAI  313 (446)
T ss_pred             EcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCccCCCCEEEeeccCCCcc----------chhHHH
Confidence            778889999999999999999875  577888764 5779999999999999999999986422          445699


Q ss_pred             HHHHHHHHHHhcCCCCCC--CCCCceeeeccCCCCCCcceeeeEeecCCC--------cEE-EE-----------cCCCC
Q 014997          291 QSAQHCIKALLSAQTHTY--DYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--------ETI-EI-----------GNFDP  348 (414)
Q Consensus       291 ~~a~~aa~~i~~~~~~~~--~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~--------~~~-~~-----------~~~~~  348 (414)
                      .||+.++.||++....++  ..+|+   ..|+.+.      +..+|....        ... ..           .+...
T Consensus       314 ~~g~~~a~~i~~~~~~~~~~~~~p~---~if~~p~------ia~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (446)
T TIGR01424       314 MEATCFANTEFGNNPTKFDHDLIAT---AVFSQPP------LGTVGLTEEEAREKFTGDILVYRAGFRPMKNTFSGRQEK  384 (446)
T ss_pred             HHHHHHHHHHhcCCCCccCcCCCCe---EEeCCch------hEEEECCHHHHHhhcCCCEEEEEEecCchHhHhhcCCCc
Confidence            999999999997443333  34554   3444321      333443221        000 00           01112


Q ss_pred             cEEEEEEe--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCChh-h-hcCCCcHHHHHHHH
Q 014997          349 KIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDKA-K-LQQASSVEEALEIA  404 (414)
Q Consensus       349 ~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~~-~-~~~~~~~~~~~~~~  404 (414)
                      -+.++.++  +++|+|+++++.++.++... ..+|+.+.+++.- . +..||++.|++..+
T Consensus       385 g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~  445 (446)
T TIGR01424       385 TLMKLVVDEKDDKVLGAHMVGPDAAEIIQGIAIALKMGATKADFDSTVGIHPSSAEEFVTM  445 (446)
T ss_pred             eEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhccccCCChHHHHhhc
Confidence            36677664  69999999877777776554 4567999988883 3 67999999998765

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=3.9e-35  Score=295.70  Aligned_cols=325  Identities=25%  Similarity=0.344  Sum_probs=239.0

Q ss_pred             HHHHcCCeEEcCCcEEEEeCCCCEEEeCC-CcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCC
Q 014997           55 WYKEKGIEMIYQDPVTSIDIEKQTLITNS-GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA  133 (414)
Q Consensus        55 ~~~~~~i~~~~~~~V~~id~~~~~V~~~~-g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~  133 (414)
                      .+++.||+++.+ +++.+|+...+|...+ ++++.||+||||||++|..+   +|....+.. +.+..+...+   ...+
T Consensus       101 ~~~~~gv~~~~g-~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~~~---pg~~~~~~~-v~~~~~~~~~---~~~~  172 (462)
T PRK06416        101 LLKKNKVDIIRG-EAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPREL---PGIEIDGRV-IWTSDEALNL---DEVP  172 (462)
T ss_pred             HHHhCCCEEEEE-EEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCCCC---CCCCCCCCe-EEcchHhhCc---cccC
Confidence            456789999986 6777777665665433 46799999999999998643   343334432 2233333322   2346


Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEE
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK  213 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~  213 (414)
                      ++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++.+.+.+.++++||++++++.|++++.+++ .+ .+.
T Consensus       173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~-~v-~v~  249 (462)
T PRK06416        173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG-EDKEISKLAERALKKRGIKIKTGAKAKKVEQTDD-GV-TVT  249 (462)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc-CCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCC-EE-EEE
Confidence            89999999999999999999999999999999999874 8899999999999999999999999999986433 22 455


Q ss_pred             eCCC---cEEecCEEEEccCCcCCChhh--hhcCCcccCCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHH
Q 014997          214 LEDG---STIDADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDH  288 (414)
Q Consensus       214 ~~~g---~~i~~D~vi~a~G~~p~~~~l--~~~gl~~~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~  288 (414)
                      +.+|   ++++||.+|+++|.+|+..++  ++.++..++|+|.||+++||+.|+|||+|||+..+.          .+..
T Consensus       250 ~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~~g~i~vd~~~~t~~~~VyAiGD~~~~~~----------~~~~  319 (462)
T PRK06416        250 LEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTDRGFIEVDEQLRTNVPNIYAIGDIVGGPM----------LAHK  319 (462)
T ss_pred             EEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeecCCEEeECCCCccCCCCEEEeeecCCCcc----------hHHH
Confidence            5555   679999999999999998874  678887776789999999999999999999986432          4667


Q ss_pred             HHHHHHHHHHHHhcCCCCCCC--CCCceeeeccCCCCCCcceeeeEeecCCCc-------EE-EEcC-----------CC
Q 014997          289 ARQSAQHCIKALLSAQTHTYD--YLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TI-EIGN-----------FD  347 (414)
Q Consensus       289 A~~~a~~aa~~i~~~~~~~~~--~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~~-~~~~-----------~~  347 (414)
                      |..||+.+|.||++. ..+++  .+|++  ..++..       +..+|....+       .. ..-.           ..
T Consensus       320 A~~~g~~aa~ni~~~-~~~~~~~~~~~~--~~~~~~-------~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~  389 (462)
T PRK06416        320 ASAEGIIAAEAIAGN-PHPIDYRGIPAV--TYTHPE-------VASVGLTEAKAKEEGFDVKVVKFPFAGNGKALALGET  389 (462)
T ss_pred             HHHHHHHHHHHHcCC-CCCCCCCCCCeE--EECCCc-------eEEEeCCHHHHHhcCCCeEEEEEecCcChHhHhcCCC
Confidence            999999999999963 33333  34433  333322       4445544221       00 0000           01


Q ss_pred             CcEEEEEEe--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCCh-hh-hcCCCcHHHHHHHHhcCCCc
Q 014997          348 PKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDK-AK-LQQASSVEEALEIARAALPV  410 (414)
Q Consensus       348 ~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~  410 (414)
                      .-+.++.++  +++|+|+++++.++.++... ..+|+.+.+++. .. ...||++.|++..|++.+..
T Consensus       390 ~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~  457 (462)
T PRK06416        390 DGFVKLIFDKKDGEVLGAHMVGARASELIQEAQLAINWEATPEDLALTIHPHPTLSEALGEAALAAAG  457 (462)
T ss_pred             ceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHHHHHHHHHHHhcc
Confidence            225666663  69999999877777776544 456789988887 33 57899999999999877654

>PRK06116 glutathione reductase; Validated

Probab=100.00  E-value=5e-35  Score=293.85  Aligned_cols=317  Identities=22%  Similarity=0.322  Sum_probs=236.3

Q ss_pred             HHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCC
Q 014997           55 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK  134 (414)
Q Consensus        55 ~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~  134 (414)
                      .+.+.||+++.+ +++.+++  ++|++ +|+++.||+||||||++|.. |.++|.     ....+..+   +......++
T Consensus       102 ~l~~~gv~~~~g-~~~~v~~--~~v~~-~g~~~~~d~lViATGs~p~~-p~i~g~-----~~~~~~~~---~~~~~~~~~  168 (450)
T PRK06116        102 GLENNGVDLIEG-FARFVDA--HTVEV-NGERYTADHILIATGGRPSI-PDIPGA-----EYGITSDG---FFALEELPK  168 (450)
T ss_pred             HHHhCCCEEEEE-EEEEccC--CEEEE-CCEEEEeCEEEEecCCCCCC-CCCCCc-----ceeEchhH---hhCccccCC
Confidence            355689999987 6776764  67777 67789999999999999864 444442     22222222   222223578


Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEe
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL  214 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~  214 (414)
                      +++|||+|.+|+|+|..|+++|.+|+++++.+++++ .+++++...+.+.+++.||+++++++|++++.++++.+ .+.+
T Consensus       169 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~-~v~~  246 (450)
T PRK06116        169 RVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLR-GFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSL-TLTL  246 (450)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcc-ccCHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceE-EEEE
Confidence            999999999999999999999999999999998886 58999999999999999999999999999986544433 4677


Q ss_pred             CCCcEEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHH
Q 014997          215 EDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ  291 (414)
Q Consensus       215 ~~g~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~  291 (414)
                      .+|++++||.|++++|.+|+++.  ++++++..+ +|+|.||+++||++|||||+|||+..+.          .+..|..
T Consensus       247 ~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~----------~~~~A~~  316 (450)
T PRK06116        247 EDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNVPGIYAVGDVTGRVE----------LTPVAIA  316 (450)
T ss_pred             cCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCCcCCCCEEEEeecCCCcC----------cHHHHHH
Confidence            88889999999999999999885  577888765 5779999999999999999999986422          4567999


Q ss_pred             HHHHHHHHHhcCCC-C--CCCCCCceeeeccCCCCCCcceeeeEeecCCC-------c--EE-EEc-----------CCC
Q 014997          292 SAQHCIKALLSAQT-H--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------E--TI-EIG-----------NFD  347 (414)
Q Consensus       292 ~a~~aa~~i~~~~~-~--~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~--~~-~~~-----------~~~  347 (414)
                      ||+.+|+||++... .  .+..+|+   ..|+.+-      +..+|....       +  .. ...           +..
T Consensus       317 ~g~~aa~~i~g~~~~~~~~~~~~p~---~if~~p~------~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (450)
T PRK06116        317 AGRRLSERLFNNKPDEKLDYSNIPT---VVFSHPP------IGTVGLTEEEAREQYGEDNVKVYRSSFTPMYTALTGHRQ  387 (450)
T ss_pred             HHHHHHHHHhCCCCCCcCCcCCCCe---EEeCCCc------cEEeeCCHHHHHHhCCCCcEEEEEEecchhHHHHhcCCC
Confidence            99999999997433 2  3445564   3455421      334443221       1  10 010           011


Q ss_pred             CcEEEEEEe--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCCh-hh-hcCCCcHHHHHHHHh
Q 014997          348 PKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDK-AK-LQQASSVEEALEIAR  405 (414)
Q Consensus       348 ~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~  405 (414)
                      .-+.+++++  +++|+|+++++..+.++... ..+|+.+.+++. .+ +..||+++|++..++
T Consensus       388 ~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~  450 (450)
T PRK06116        388 PCLMKLVVVGKEEKVVGLHGIGFGADEMIQGFAVAIKMGATKADFDNTVAIHPTAAEEFVTMR  450 (450)
T ss_pred             ceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHHHHhhcC
Confidence            236677664  58999999877777666554 456789998888 33 679999999998763

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=8.4e-35  Score=293.04  Aligned_cols=326  Identities=17%  Similarity=0.255  Sum_probs=235.1

Q ss_pred             HHHHcCCeEEcCCcEEEEeCCCCEEEeCCC--cEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcC
Q 014997           55 WYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK  132 (414)
Q Consensus        55 ~~~~~~i~~~~~~~V~~id~~~~~V~~~~g--~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~  132 (414)
                      .+++.||+++.+ ++..+++....|...+|  .++.||+||||||++|+.+|.+++ +.+++.+   ..+...+   ...
T Consensus       102 ~~~~~gV~~~~g-~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~-~~~~v~~---~~~~~~~---~~~  173 (471)
T PRK06467        102 MAKGRKVTVVNG-LGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPH-DDPRIWD---STDALEL---KEV  173 (471)
T ss_pred             HHHhCCCEEEEE-EEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCCCC-CCCcEEC---hHHhhcc---ccC
Confidence            345679999987 56656554334555566  479999999999999875554333 2334432   2233222   235


Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEE
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV  212 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v  212 (414)
                      +++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++++.+.+.++++ |++++++.+++++..+++ + .+
T Consensus       174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~-~d~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~-~-~v  249 (471)
T PRK06467        174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA-ADKDIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDG-I-YV  249 (471)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc-CCHHHHHHHHHHHhhc-eEEEcCCEEEEEEEcCCE-E-EE
Confidence            689999999999999999999999999999999999985 8999999999999988 999999999999754333 2 34


Q ss_pred             EeCC--C--cEEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCccccccc
Q 014997          213 KLED--G--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEH  285 (414)
Q Consensus       213 ~~~~--g--~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~  285 (414)
                      .+.+  +  +++++|.||+++|++||+++  +++++++.+ +|+|.||+++||+.|+|||+|||+..+.          .
T Consensus       250 ~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t~~p~VyAiGDv~~~~~----------l  319 (471)
T PRK06467        250 TMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRTNVPHIFAIGDIVGQPM----------L  319 (471)
T ss_pred             EEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCcccCCCCEEEehhhcCCcc----------c
Confidence            4433  2  46999999999999999985  467788775 5779999999999999999999986432          4


Q ss_pred             HHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeeccCCCCCCcceeeeEeecCCCc-------EE--EE--c--------C
Q 014997          286 VDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TI--EI--G--------N  345 (414)
Q Consensus       286 ~~~A~~~a~~aa~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~~--~~--~--------~  345 (414)
                      +..|..+|+.+|.||++... ..+..+|+.  . |..+      .+..+|....+       ..  ..  .        +
T Consensus       320 a~~A~~eG~~aa~~i~g~~~~~~~~~~p~~--~-~~~p------~ia~vGlte~ea~~~g~~~~~~~~~~~~~~~~~~~~  390 (471)
T PRK06467        320 AHKGVHEGHVAAEVIAGKKHYFDPKVIPSI--A-YTEP------EVAWVGLTEKEAKEEGIEYETATFPWAASGRAIASD  390 (471)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCCCCCCCeE--E-ECCC------ceeEEECCHHHHHhcCCCeEEEEEecCcchhhhhCC
Confidence            56699999999999996432 123345653  2 3222      13444543211       00  00  0        0


Q ss_pred             CCCcEEEEEEe--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCChh-h-hcCCCcHHHHHHHHhcCCCcc
Q 014997          346 FDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDKA-K-LQQASSVEEALEIARAALPVE  411 (414)
Q Consensus       346 ~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~  411 (414)
                      ...-|.++.++  +++|+|+++++.++.++... ..+|+.+.+++.- . +..||+++|++.+|++.+..+
T Consensus       391 ~~~g~~kli~d~~t~~ilG~~~vg~~a~e~i~~~a~ai~~~~t~~~l~~~~~~hPt~~e~~~~a~~~~~~~  461 (471)
T PRK06467        391 CADGMTKLIFDKETHRVLGGAIVGTNAGELLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAAEAFEGS  461 (471)
T ss_pred             CCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHHHHHhhcCC
Confidence            01226667664  58999999877777766544 4467888888772 2 678999999999999776543

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=100.00  E-value=7.6e-35  Score=291.70  Aligned_cols=317  Identities=21%  Similarity=0.288  Sum_probs=232.3

Q ss_pred             HHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCC
Q 014997           55 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK  134 (414)
Q Consensus        55 ~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~  134 (414)
                      .+++.||++++++.+.   .+.++|.+ +|+.+.||+||||||++|..++.++|.+     ...+.+   .+......++
T Consensus       100 ~l~~~gv~~~~g~~~~---~~~~~v~v-~~~~~~~d~vIiAtGs~p~~p~~i~g~~-----~~~~~~---~~~~~~~~~~  167 (450)
T TIGR01421       100 NLEKNKVDVIFGHARF---TKDGTVEV-NGRDYTAPHILIATGGKPSFPENIPGAE-----LGTDSD---GFFALEELPK  167 (450)
T ss_pred             HHHhCCCEEEEEEEEE---ccCCEEEE-CCEEEEeCEEEEecCCCCCCCCCCCCCc-----eeEcHH---HhhCccccCC
Confidence            3556799999985432   34567776 4667999999999999986432444422     112222   2222223478


Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEe
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL  214 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~  214 (414)
                      +++|||||++|+|+|..|+++|.+||++++.+++++ .+++++.+.+.+.|+++||++++++.+++++.+.++. ..+.+
T Consensus       168 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~-~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~-~~v~~  245 (450)
T TIGR01421       168 RVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR-SFDSMISETITEEYEKEGINVHKLSKPVKVEKTVEGK-LVIHF  245 (450)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc-ccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCce-EEEEE
Confidence            999999999999999999999999999999999986 5899999999999999999999999999998643332 35677


Q ss_pred             CCC-cEEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHH
Q 014997          215 EDG-STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHAR  290 (414)
Q Consensus       215 ~~g-~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~  290 (414)
                      ++| +.++||.|++++|++||+++  +++.+++.+ +|+|.||+++||+.|||||+|||+..+.          .+..|.
T Consensus       246 ~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T~~p~IyAiGD~~~~~~----------~~~~A~  315 (450)
T TIGR01421       246 EDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNTNVPGIYALGDVVGKVE----------LTPVAI  315 (450)
T ss_pred             CCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCcCCCCCEEEEEecCCCcc----------cHHHHH
Confidence            777 57999999999999999985  577888765 5779999999999999999999996432          455799


Q ss_pred             HHHHHHHHHHhcCCC---CCCCCCCceeeeccCCCCCCcceeeeEeecCCCc---------EE-EEc-----------CC
Q 014997          291 QSAQHCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE---------TI-EIG-----------NF  346 (414)
Q Consensus       291 ~~a~~aa~~i~~~~~---~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~---------~~-~~~-----------~~  346 (414)
                      .+|+.+|+||++...   ..+..+|+   ..|..+-      +..+|....+         .. ...           +.
T Consensus       316 ~~g~~aa~~i~~~~~~~~~~~~~~p~---~~f~~p~------ia~vGlte~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~  386 (450)
T TIGR01421       316 AAGRKLSERLFNGKTDDKLDYNNVPT---VVFSHPP------IGTIGLTEKEAIEKYGKENIKVYNSSFTPMYYAMTSEK  386 (450)
T ss_pred             HHHHHHHHHHhcCCCCCccCcccCCe---EEeCCCc------eEEEeCCHHHHHhhcCCCCEEEEEEEcChhHHHHhcCC
Confidence            999999999996432   23455665   3444321      3334433210         00 000           01


Q ss_pred             CCcEEEEEEe--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCCh-hh-hcCCCcHHHHHHHH
Q 014997          347 DPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDK-AK-LQQASSVEEALEIA  404 (414)
Q Consensus       347 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~  404 (414)
                      ..-+.++.++  +++|+|+++++..+.++... ..+|+.+.+++. .+ +..||+++|++..+
T Consensus       387 ~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~  449 (450)
T TIGR01421       387 QKCRMKLVCAGKEEKVVGLHGIGDGVDEMLQGFAVAIKMGATKADFDNTVAIHPTSSEELVTM  449 (450)
T ss_pred             CceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHhhc
Confidence            1125566554  69999999877777776654 456799998888 33 67999999998765

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PLN02546 glutathione reductase

Probab=100.00  E-value=6.3e-35  Score=296.67  Aligned_cols=318  Identities=22%  Similarity=0.306  Sum_probs=237.1

Q ss_pred             hHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCC
Q 014997           54 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA  133 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~  133 (414)
                      +.+++.||+++.+ +++.+++.  +|.+ +|+++.||+||||||++|. .|.++|     +....+   ++.+......+
T Consensus       186 ~~l~~~gV~~i~G-~a~~vd~~--~V~v-~G~~~~~D~LVIATGs~p~-~P~IpG-----~~~v~~---~~~~l~~~~~~  252 (558)
T PLN02546        186 NILKNAGVTLIEG-RGKIVDPH--TVDV-DGKLYTARNILIAVGGRPF-IPDIPG-----IEHAID---SDAALDLPSKP  252 (558)
T ss_pred             HHHHhCCcEEEEe-EEEEccCC--EEEE-CCEEEECCEEEEeCCCCCC-CCCCCC-----hhhccC---HHHHHhccccC
Confidence            3355679999986 77777764  5666 5778999999999999986 454444     222222   33333333467


Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEE
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK  213 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~  213 (414)
                      ++++|||+|++|+|+|..|+++|.+|+++++.+++++ .+++++...+.+.|+++||++++++.+.++...+++.+ .+.
T Consensus       253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~-~~d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v-~v~  330 (558)
T PLN02546        253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR-GFDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSL-SLK  330 (558)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc-ccCHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEE-EEE
Confidence            9999999999999999999999999999999999887 58999999999999999999999999999976444433 455


Q ss_pred             eCCCcEEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHH
Q 014997          214 LEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHAR  290 (414)
Q Consensus       214 ~~~g~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~  290 (414)
                      +.+++...+|.|++++|++||+++  ++++|++.+ +|+|.||+++||++|||||+|||+..+.          .+..|.
T Consensus       331 ~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~Ts~p~IYAaGDv~~~~~----------l~~~A~  400 (558)
T PLN02546        331 TNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRTSVPSIWAVGDVTDRIN----------LTPVAL  400 (558)
T ss_pred             ECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCceeCCCCEEEeeccCCCcc----------cHHHHH
Confidence            666655669999999999999985  578888875 5779999999999999999999997432          456799


Q ss_pred             HHHHHHHHHHhcCCC--CCCCCCCceeeeccCCCCCCcceeeeEeecCCCc-------EE------------EEcCCCCc
Q 014997          291 QSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TI------------EIGNFDPK  349 (414)
Q Consensus       291 ~~a~~aa~~i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~~------------~~~~~~~~  349 (414)
                      .+|+.+|+||++...  ..+..+|+   ..|+.+.      +..+|..+.+       ..            ..+....-
T Consensus       401 ~~g~~~a~~i~g~~~~~~~~~~vp~---~vft~Pe------ia~VGlte~eA~~~g~~~~~~~~~~~~~~~~~~~~~~~g  471 (558)
T PLN02546        401 MEGGALAKTLFGNEPTKPDYRAVPS---AVFSQPP------IGQVGLTEEQAIEEYGDVDVFTANFRPLKATLSGLPDRV  471 (558)
T ss_pred             HHHHHHHHHHcCCCCCcCCCCCCCE---EEeCCch------HhhccCCHHHHHHcCCCeEEEEEecccchhhhhCCCCcE
Confidence            999999999997432  23455665   4565421      2223322110       00            01111123


Q ss_pred             EEEEEEe--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCChh-h-hcCCCcHHHHHHHHh
Q 014997          350 IATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDKA-K-LQQASSVEEALEIAR  405 (414)
Q Consensus       350 ~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~~-~-~~~~~~~~~~~~~~~  405 (414)
                      +.++.++  +++|+|+++++.++.++... ..+|+.+.++++- . +..||++.|.+..++
T Consensus       472 ~~Klv~d~~t~~ILGa~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hPT~~E~~~~~~  532 (558)
T PLN02546        472 FMKLIVCAKTNKVLGVHMCGEDAPEIIQGFAVAVKAGLTKADFDATVGIHPTAAEEFVTMR  532 (558)
T ss_pred             EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHHHh
Confidence            6677664  68999999877777776554 4567999988873 2 689999999998887

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=1.5e-34  Score=291.07  Aligned_cols=327  Identities=21%  Similarity=0.299  Sum_probs=233.8

Q ss_pred             HHHcCCeEEcCCcEEEEeCCCC-EEEeCCCc--EEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcC
Q 014997           56 YKEKGIEMIYQDPVTSIDIEKQ-TLITNSGK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK  132 (414)
Q Consensus        56 ~~~~~i~~~~~~~V~~id~~~~-~V~~~~g~--~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~  132 (414)
                      +++.+|+++.+. . .++.+.+ .|.+.+|+  ++.||+||||||++|..   ++|...++.+.+.    +..+......
T Consensus       103 ~~~~~v~~~~g~-a-~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~---ipg~~~~~~~~~~----~~~~~~~~~~  173 (466)
T PRK06115        103 FRKNKVDWIKGW-G-RLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPTP---LPGVTIDNQRIID----STGALSLPEV  173 (466)
T ss_pred             HHhCCCEEEEEE-E-EEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCCC---CCCCCCCCCeEEC----HHHHhCCccC
Confidence            445689998863 3 4444333 44455664  69999999999998753   2444445544443    2222222345


Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEE
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV  212 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v  212 (414)
                      +++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++.+.+.+.|++.||++++++.+++++.++++....+
T Consensus       174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~-~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~  252 (466)
T PRK06115        174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPG-TDTETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTL  252 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCC-CCHHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEE
Confidence            799999999999999999999999999999999999985 8899999999999999999999999999986433332222


Q ss_pred             Ee---CCCcEEecCEEEEccCCcCCChh--hhhcCCcccCCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHH
Q 014997          213 KL---EDGSTIDADTIVIGIGAKPTVSP--FERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVD  287 (414)
Q Consensus       213 ~~---~~g~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~  287 (414)
                      ..   .+++++++|.|++++|.+||++.  ++..++..+.+++.||++++|+.|+|||+|||+..+.          ...
T Consensus       253 ~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G~~vd~~~~Ts~~~IyA~GD~~~~~~----------la~  322 (466)
T PRK06115        253 EPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRGMLANDHHRTSVPGVWVIGDVTSGPM----------LAH  322 (466)
T ss_pred             EEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCCEEECCCeecCCCCEEEeeecCCCcc----------cHH
Confidence            22   12357999999999999999885  4567777765568899999999999999999997532          455


Q ss_pred             HHHHHHHHHHHHHhcCCC-CCCCCCCceeeeccCCCCCCcceeeeEeecCCCc-------EE-E------------EcCC
Q 014997          288 HARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TI-E------------IGNF  346 (414)
Q Consensus       288 ~A~~~a~~aa~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~~-~------------~~~~  346 (414)
                      .|..||+.+|+||++... ..+..+|+.   +|+.+      .+..+|....+       .. .            .++ 
T Consensus       323 ~A~~~g~~aa~~i~~~~~~~~~~~~p~~---~~t~p------~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~-  392 (466)
T PRK06115        323 KAEDEAVACIERIAGKAGEVNYGLIPGV---IYTRP------EVATVGKTEEQLKAEGRAYKVGKFPFTANSRAKINHE-  392 (466)
T ss_pred             HHHHHHHHHHHHHcCCCCCCCCCCCCeE---EECCc------ccEEeeCCHHHHHHCCCCEEEEEEecccChhhHhcCC-
Confidence            699999999999997432 234456653   33322      13344443210       10 0            111 


Q ss_pred             CCcEEEEEEe--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCCh-hh-hcCCCcHHHHHHHHhcCCCccc
Q 014997          347 DPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDK-AK-LQQASSVEEALEIARAALPVEA  412 (414)
Q Consensus       347 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~  412 (414)
                      ..-|.++.++  +++|+|+++++..+.++... ..+|+.+.+++. .. +..||+++|.+.+|+..+..++
T Consensus       393 ~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~dl~~~~~~hPt~~e~~~~a~~~~~~~~  463 (466)
T PRK06115        393 TEGFAKILADARTDEVLGVHMVGPSVSEMIGEFCVAMEFSASAEDIALTCHPHPTRSEALRQAAMNVEGWA  463 (466)
T ss_pred             CceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCccCCCChHHHHHHHHHHHhcch
Confidence            1225666664  58999999877777766544 456788888887 33 6789999999999998766543

>TIGR03452 mycothione_red mycothione reductase

Probab=100.00  E-value=1.7e-34  Score=289.42  Aligned_cols=316  Identities=24%  Similarity=0.309  Sum_probs=233.2

Q ss_pred             cCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCCeEEE
Q 014997           59 KGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVV  138 (414)
Q Consensus        59 ~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvV  138 (414)
                      .||+++.|..+..   +.++|.+.+|+++.||+||||||++|.. |+..+  ..++. +.+..+...+.   ..+++++|
T Consensus       105 ~gv~~~~g~~~~~---~~~~V~~~~g~~~~~d~lIiATGs~p~~-p~~~~--~~~~~-~~~~~~~~~l~---~~~k~vvV  174 (452)
T TIGR03452       105 PNIDVYDGHARFV---GPRTLRTGDGEEITGDQIVIAAGSRPYI-PPAIA--DSGVR-YHTNEDIMRLP---ELPESLVI  174 (452)
T ss_pred             CCeEEEEEEEEEe---cCCEEEECCCcEEEeCEEEEEECCCCCC-CCCCC--CCCCE-EEcHHHHHhhh---hcCCcEEE
Confidence            7999999854432   5788988888889999999999999864 43222  22333 34455555443   24789999


Q ss_pred             ECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCc
Q 014997          139 VGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS  218 (414)
Q Consensus       139 vGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~  218 (414)
                      ||+|++|+|+|..|+++|.+|+++++.+++++ .+++++...+.+.+ +.||++++++.|++++.++++  ..+.+.+|+
T Consensus       175 IGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~-~~d~~~~~~l~~~~-~~gI~i~~~~~V~~i~~~~~~--v~v~~~~g~  250 (452)
T TIGR03452       175 VGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR-HLDEDISDRFTEIA-KKKWDIRLGRNVTAVEQDGDG--VTLTLDDGS  250 (452)
T ss_pred             ECCCHHHHHHHHHHHhCCCcEEEEEccCcccc-ccCHHHHHHHHHHH-hcCCEEEeCCEEEEEEEcCCe--EEEEEcCCC
Confidence            99999999999999999999999999998886 47889888887755 468999999999999854333  246677888


Q ss_pred             EEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHH
Q 014997          219 TIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH  295 (414)
Q Consensus       219 ~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~  295 (414)
                      ++++|.+++++|.+|++++  ++++|++.+ +|+|.||+++||+.|+|||+|||+..+.          ....|..||+.
T Consensus       251 ~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~----------l~~~A~~~g~~  320 (452)
T TIGR03452       251 TVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRTSARGVWALGDVSSPYQ----------LKHVANAEARV  320 (452)
T ss_pred             EEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCcccCCCCEEEeecccCccc----------ChhHHHHHHHH
Confidence            9999999999999999987  466788874 5779999999999999999999997432          23458999999


Q ss_pred             HHHHHhcCCC---CCCCCCCceeeeccCCCCCCcceeeeEeecCCCc-------EE-E------------EcCCCCcEEE
Q 014997          296 CIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TI-E------------IGNFDPKIAT  352 (414)
Q Consensus       296 aa~~i~~~~~---~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~~-~------------~~~~~~~~~~  352 (414)
                      +|+||++...   ..+..+|+.   .|..+      .+..+|..+.+       .. .            .++ ..-|.+
T Consensus       321 ~a~ni~~~~~~~~~~~~~~p~~---i~t~p------~ia~vGlte~ea~~~g~~~~~~~~~~~~~~~~~~~~~-~~g~~K  390 (452)
T TIGR03452       321 VKHNLLHPNDLRKMPHDFVPSA---VFTHP------QIATVGLTEQEAREAGHDITVKIQNYGDVAYGWAMED-TTGFCK  390 (452)
T ss_pred             HHHHhcCCCCcccCCCCCCCeE---EECCC------CeeeeeCCHHHHHhcCCCeEEEEecCCchhhHhhcCC-CCeEEE
Confidence            9999996432   234456653   33221      13344433211       00 0            011 122566


Q ss_pred             EEEe--CCEEEEEEeecCChHHhhHHH-HHHhCCCCCCh-hh--hcCCCcHHHHHHHHhcCC
Q 014997          353 FWID--SGKLKGVLVESGSPEEFQLLP-TLARSQPFVDK-AK--LQQASSVEEALEIARAAL  408 (414)
Q Consensus       353 ~~~~--~~~~~g~~~~~~~~~~~~~~~-~l~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~  408 (414)
                      +.++  +++|+|+++++..+.++...- .+|+.+.+++. ..  +..||++.|++++|++.+
T Consensus       391 lv~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e~~~~a~~~~  452 (452)
T TIGR03452       391 LIADRDTGKLLGAHIIGPQASSLIQPLITAMAFGLDAREMARKQYWIHPALPEVVENALLGL  452 (452)
T ss_pred             EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCCcccCCchHHHHHHHHhcC
Confidence            6664  699999998777777665544 46788988887 33  468999999999998764

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK14694 putative mercuric reductase; Provisional

Probab=100.00  E-value=1.7e-34  Score=290.99  Aligned_cols=318  Identities=19%  Similarity=0.286  Sum_probs=235.7

Q ss_pred             CCeEEcCCcEEEEeCCCCEEEeCCCc--EEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCCeEE
Q 014997           60 GIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVV  137 (414)
Q Consensus        60 ~i~~~~~~~V~~id~~~~~V~~~~g~--~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vv  137 (414)
                      +|+++.+ +|+.+|++.+.|++.+|.  ++.||+||||||++|+. |+++|.+...+++   ..+...+   ...+++++
T Consensus       111 ~v~~~~g-~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~~-p~i~G~~~~~~~~---~~~~~~l---~~~~~~vv  182 (468)
T PRK14694        111 AITVLNG-EARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAE-PPVPGLAETPYLT---STSALEL---DHIPERLL  182 (468)
T ss_pred             CeEEEEE-EEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCCC-CCCCCCCCCceEc---chhhhch---hcCCCeEE
Confidence            8999986 799999998899988873  79999999999999864 5556643222222   2222222   13468999


Q ss_pred             EECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCC
Q 014997          138 VVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG  217 (414)
Q Consensus       138 VvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g  217 (414)
                      |||+|++|+|+|..|+++|.+|+++++ +++++ .+++++.+.+.+.+++.||++++++.+++++.+ ++. ..+.++++
T Consensus       183 ViG~G~~G~E~A~~l~~~g~~Vtlv~~-~~~l~-~~~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~-~~~-~~v~~~~~  258 (468)
T PRK14694        183 VIGASVVALELAQAFARLGSRVTVLAR-SRVLS-QEDPAVGEAIEAAFRREGIEVLKQTQASEVDYN-GRE-FILETNAG  258 (468)
T ss_pred             EECCCHHHHHHHHHHHHcCCeEEEEEC-CCCCC-CCCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCE-EEEEECCC
Confidence            999999999999999999999999986 46776 478899999999999999999999999999754 222 23555444


Q ss_pred             cEEecCEEEEccCCcCCChhh--hhcCCcccCCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHH
Q 014997          218 STIDADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH  295 (414)
Q Consensus       218 ~~i~~D~vi~a~G~~p~~~~l--~~~gl~~~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~  295 (414)
                       ++++|.|++++|.+|+++++  +++++..++|+|.||+++||+.|+|||+|||+..+.          ....|..+|+.
T Consensus       259 -~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~----------~~~~A~~~G~~  327 (468)
T PRK14694        259 -TLRAEQLLVATGRTPNTENLNLESIGVETERGAIRIDEHLQTTVSGIYAAGDCTDQPQ----------FVYVAAAGGSR  327 (468)
T ss_pred             -EEEeCEEEEccCCCCCcCCCCchhcCcccCCCeEeeCCCcccCCCCEEEEeecCCCcc----------cHHHHHHHHHH
Confidence             69999999999999999874  567887767889999999999999999999997543          34568899999


Q ss_pred             HHHHHhcCCC-CCCCCCCceeeeccCCCCCCcceeeeEeecCCCc-------E-EEE-----------cCCCCcEEEEEE
Q 014997          296 CIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T-IEI-----------GNFDPKIATFWI  355 (414)
Q Consensus       296 aa~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~-~~~-----------~~~~~~~~~~~~  355 (414)
                      ||.||++... ..+..+|++  ..++..       +..+|....+       . ...           .....-|.++.+
T Consensus       328 aa~~i~~~~~~~~~~~~p~~--~~~~p~-------~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~  398 (468)
T PRK14694        328 AAINMTGGDASLDLSAMPEV--IFTDPQ-------VATVGLSEAEAQAQGYDTDSRTLDLENVPRALVNFDTGGFIKMVA  398 (468)
T ss_pred             HHHHhcCCCcccccCCCCeE--EECCCC-------eEEeeCCHHHHHHcCCceEEEEEecccchhhhhcCCCceEEEEEE
Confidence            9999986432 223345553  222221       4445543210       0 000           001122667666


Q ss_pred             e--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCCh-hh-hcCCCcHHHHHHHHhcCCC
Q 014997          356 D--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDK-AK-LQQASSVEEALEIARAALP  409 (414)
Q Consensus       356 ~--~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~  409 (414)
                      +  +++|+|+++++.++.++... .-+|+.+.+++. .. ...||+++|++.+++..+.
T Consensus       399 ~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~  457 (468)
T PRK14694        399 ERGSGRLLGVQVVAGEAGELIQTAVMALRARMTVNEIADELFPYLTMVEGLKLCAQTFT  457 (468)
T ss_pred             ECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccccCCCchHHHHHHHHHhhh
Confidence            4  69999999876677766554 446789998888 33 6789999999999888654

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=2.8e-34  Score=289.96  Aligned_cols=327  Identities=22%  Similarity=0.326  Sum_probs=236.5

Q ss_pred             hHHHHcCCeEEcCCcEEEEeCC-------CCEEEeCCC--cEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHH
Q 014997           54 EWYKEKGIEMIYQDPVTSIDIE-------KQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADAD  124 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~~id~~-------~~~V~~~~g--~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~  124 (414)
                      +.+++.+|+++.+ +++.+|+.       ..+|.+.+|  +++.||+||||||++|..+|   +....+.+.+ +..+..
T Consensus       100 ~~~~~~gv~~~~g-~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~~p---~~~~~~~~~~-~~~~~~  174 (472)
T PRK05976        100 ALLKKGKIDVFHG-IGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVELP---GLPFDGEYVI-SSDEAL  174 (472)
T ss_pred             HHHHhCCCEEEEE-EEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCCCC---CCCCCCceEE-cchHhh
Confidence            3456679999996 78889887       556777777  57999999999999986443   2223343222 223332


Q ss_pred             HHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEec
Q 014997          125 ALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG  204 (414)
Q Consensus       125 ~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~  204 (414)
                      .+   ...+++++|||||++|+|+|..|+++|.+||++++.+++++. +++++++.+.+.+++.||++++++.+++++..
T Consensus       175 ~~---~~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~-~~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~  250 (472)
T PRK05976        175 SL---ETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPT-EDAELSKEVARLLKKLGVRVVTGAKVLGLTLK  250 (472)
T ss_pred             Cc---cccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCc-CCHHHHHHHHHHHHhcCCEEEeCcEEEEEEEe
Confidence            22   234689999999999999999999999999999999998874 78899999999999999999999999999742


Q ss_pred             CCCcEEEEEeCCC--cEEecCEEEEccCCcCCChh--hhhcCCcccCCCEEEcCCCCCCCCcEEEEccccccCCccCCcc
Q 014997          205 SDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSP--FERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRT  280 (414)
Q Consensus       205 ~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~  280 (414)
                      .++.+..+.+.+|  ++++||.+++++|.+|+++.  ++..++..++|+|.||++++|+.|+|||+|||+..+.      
T Consensus       251 ~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~g~i~Vd~~l~ts~~~IyAiGD~~~~~~------  324 (472)
T PRK05976        251 KDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGFIQIDDFCQTKERHIYAIGDVIGEPQ------  324 (472)
T ss_pred             cCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCceecCCEEEECCCcccCCCCEEEeeecCCCcc------
Confidence            1233334455566  36999999999999999875  3556666566789999999999999999999986321      


Q ss_pred             cccccHHHHHHHHHHHHHHHhcCCCCCCCC--CCceeeeccCCCCCCcceeeeEeecCCC-------cEE----------
Q 014997          281 ARVEHVDHARQSAQHCIKALLSAQTHTYDY--LPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETI----------  341 (414)
Q Consensus       281 ~~~~~~~~A~~~a~~aa~~i~~~~~~~~~~--~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~~----------  341 (414)
                          .+..|..+|+.++.||++.....+++  +|+  ...++..       +..+|....       +..          
T Consensus       325 ----~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~--~~~~~p~-------~a~vG~te~~a~~~g~~~~~~~~~~~~~~  391 (472)
T PRK05976        325 ----LAHVAMAEGEMAAEHIAGKKPRPFDYAAIPA--CCYTDPE-------VASVGLTEEEAKEAGYDVKVGKFPFAANG  391 (472)
T ss_pred             ----cHHHHHHHHHHHHHHHcCCCCCCCCCCCCCE--EEECcCc-------eEEEeCCHHHHHHcCCCEEEEEEECCcch
Confidence                45679999999999998754233333  343  2222221       333343221       000          


Q ss_pred             ---EEcCCCCcEEEEEEe--CCEEEEEEeecCChHHhhH-HHHHHhCCCCCCh-hh-hcCCCcHHHHHHHHhcCCC
Q 014997          342 ---EIGNFDPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK-AK-LQQASSVEEALEIARAALP  409 (414)
Q Consensus       342 ---~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~-~~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~  409 (414)
                         ..+. ..-+.++.++  +++|+|+++++.++.++.. +..+|+.+.+++. .. +..||++.|.+++|++.+.
T Consensus       392 ~~~~~~~-~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~  466 (472)
T PRK05976        392 KALTYGE-SDGFVKVVADRDTHDILGVQAVGPHVTELISEFALALELGARLWEVAGTIHPHPTLSEAIQEAALAAD  466 (472)
T ss_pred             hhhhcCC-CceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCChHHHHHHHHHHhh
Confidence               0111 1225666664  5899999987777776654 4456789998887 33 5789999999999987653

>TIGR02053 MerA mercuric reductase

Probab=100.00  E-value=2.5e-34  Score=289.88  Aligned_cols=323  Identities=22%  Similarity=0.318  Sum_probs=236.6

Q ss_pred             hHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCc-EEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcC
Q 014997           54 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK-LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK  132 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~-~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~  132 (414)
                      +.+++.+|+++.+ ++..+  +.++|.+.+|+ .+.||+||||||++|. .|.++|.+..++++.   .+.   ......
T Consensus        96 ~~l~~~gv~~~~g-~~~~~--~~~~v~v~~g~~~~~~~~lIiATGs~p~-~p~i~G~~~~~~~~~---~~~---~~~~~~  165 (463)
T TIGR02053        96 DVLSSYGVDYLRG-RARFK--DPKTVKVDLGREVRGAKRFLIATGARPA-IPPIPGLKEAGYLTS---EEA---LALDRI  165 (463)
T ss_pred             HHHHhCCcEEEEE-EEEEc--cCCEEEEcCCeEEEEeCEEEEcCCCCCC-CCCCCCcccCceECc---hhh---hCcccC
Confidence            4567789999986 55544  46788887764 6899999999999986 455566544444332   222   221234


Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEE
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV  212 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v  212 (414)
                      +++++|||+|.+|+|+|..|+++|.+||++++.+++++. +++++...+.+.+++.||+++++++|++++.++++.  .+
T Consensus       166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~--~v  242 (463)
T TIGR02053       166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR-EEPEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGK--II  242 (463)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc-cCHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEE--EE
Confidence            689999999999999999999999999999999999874 789999999999999999999999999998643322  33


Q ss_pred             EeC---CCcEEecCEEEEccCCcCCCh-h-hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccH
Q 014997          213 KLE---DGSTIDADTIVIGIGAKPTVS-P-FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHV  286 (414)
Q Consensus       213 ~~~---~g~~i~~D~vi~a~G~~p~~~-~-l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~  286 (414)
                      .+.   +++++++|.|++|+|.+|+++ + ++..++..+ +|+|.||++|||+.|+|||+|||+..+.          .+
T Consensus       243 ~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~VyAiGD~~~~~~----------~~  312 (463)
T TIGR02053       243 TVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPGIYAAGDVTGGLQ----------LE  312 (463)
T ss_pred             EEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCccCCCCCEEEeeecCCCcc----------cH
Confidence            332   236799999999999999988 4 677788764 5779999999999999999999997532          45


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCC--CCCCceeeeccCCCCCCcceeeeEeecCCCc-------EE-E------------Ec
Q 014997          287 DHARQSAQHCIKALLSAQTHTY--DYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TI-E------------IG  344 (414)
Q Consensus       287 ~~A~~~a~~aa~~i~~~~~~~~--~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~~-~------------~~  344 (414)
                      ..|..||+.+|.||++.....+  ..+|+  . .|..+      .+..+|....+       .. .            .+
T Consensus       313 ~~A~~~g~~aa~ni~~~~~~~~~~~~~p~--~-~~~~p------~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~  383 (463)
T TIGR02053       313 YVAAKEGVVAAENALGGANAKLDLLVIPR--V-VFTDP------AVASVGLTEAEAQKAGIECDCRTLPLTNVPRARINR  383 (463)
T ss_pred             hHHHHHHHHHHHHhcCCCCCccCcCCCCe--E-EeccC------ceEEEeCCHHHHHhcCCCeEEEEEecccchHHHhcC
Confidence            6799999999999996423333  33453  2 23221      13445543210       00 0            01


Q ss_pred             CCCCcEEEEEEe--CCEEEEEEeecCChHHhhHHH-HHHhCCCCCChh-h-hcCCCcHHHHHHHHhcCCC
Q 014997          345 NFDPKIATFWID--SGKLKGVLVESGSPEEFQLLP-TLARSQPFVDKA-K-LQQASSVEEALEIARAALP  409 (414)
Q Consensus       345 ~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~-~l~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~  409 (414)
                      . ..-+.++.++  +++|+|+++++.++.++...- .+|+.+.+++.- . ..+||++.|.+.+|++.+.
T Consensus       384 ~-~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~pt~~e~~~~a~~~~~  452 (463)
T TIGR02053       384 D-TRGFIKLVAEPGTGKVLGVQVVAPEAAEVINEAALAIRAGMTVDDLIDTLHPFPTMAEGLKLAAQTFY  452 (463)
T ss_pred             C-CcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCChHHHHHHHHHHhh
Confidence            1 1225666664  699999998777777766554 467888888773 2 5689999999999998764

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PTZ00058 glutathione reductase; Provisional

Probab=100.00  E-value=1.9e-34  Score=293.00  Aligned_cols=306  Identities=17%  Similarity=0.277  Sum_probs=219.1

Q ss_pred             CCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEE
Q 014997           82 NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTI  161 (414)
Q Consensus        82 ~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtl  161 (414)
                      ++|+++.||+||||||++|+ .|.++|.+  .+.   +.++   +.. +..+++++|||+|++|+|+|..|+++|.+||+
T Consensus       196 ~~g~~i~ad~lVIATGS~P~-~P~IpG~~--~v~---ts~~---~~~-l~~pk~VvIIGgG~iGlE~A~~l~~~G~~Vtl  265 (561)
T PTZ00058        196 DDGQVIEGKNILIAVGNKPI-FPDVKGKE--FTI---SSDD---FFK-IKEAKRIGIAGSGYIAVELINVVNRLGAESYI  265 (561)
T ss_pred             CCCcEEECCEEEEecCCCCC-CCCCCCce--eEE---EHHH---Hhh-ccCCCEEEEECCcHHHHHHHHHHHHcCCcEEE
Confidence            56778999999999999986 45555532  122   2222   222 23489999999999999999999999999999


Q ss_pred             EeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCC-CcEEecCEEEEccCCcCCChhhh-
Q 014997          162 IFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED-GSTIDADTIVIGIGAKPTVSPFE-  239 (414)
Q Consensus       162 v~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~-g~~i~~D~vi~a~G~~p~~~~l~-  239 (414)
                      +++.+++++ .+++++.+.+.+.+++.||++++++.+.+++.++++.+ .+.+.+ ++++++|.|++++|++|+++.+. 
T Consensus       266 i~~~~~il~-~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v-~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l  343 (561)
T PTZ00058        266 FARGNRLLR-KFDETIINELENDMKKNNINIITHANVEEIEKVKEKNL-TIYLSDGRKYEHFDYVIYCVGRSPNTEDLNL  343 (561)
T ss_pred             EEecccccc-cCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcE-EEEECCCCEEEECCEEEECcCCCCCccccCc
Confidence            999999886 58999999999999999999999999999986433333 234434 45799999999999999988763 


Q ss_pred             -hcCCcccCCCEEEcCCCCCCCCcEEEEccccccCCc-----------------------cCCccc-ccccHHHHHHHHH
Q 014997          240 -RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK-----------------------MYDRTA-RVEHVDHARQSAQ  294 (414)
Q Consensus       240 -~~gl~~~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~-----------------------~~~~~~-~~~~~~~A~~~a~  294 (414)
                       ..++..++|+|.||+++||+.|||||+|||+..+..                       ..+... .......|..||+
T Consensus       344 ~~~~~~~~~G~I~VDe~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~  423 (561)
T PTZ00058        344 KALNIKTPKGYIKVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGR  423 (561)
T ss_pred             cccceecCCCeEEECcCCccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHH
Confidence             344444568899999999999999999999984321                       111111 2456778999999


Q ss_pred             HHHHHHhcCCC--CCCCCCCceeeeccCCCCCCcceeeeEeecCCCc--------EEEE-----------------cCCC
Q 014997          295 HCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE--------TIEI-----------------GNFD  347 (414)
Q Consensus       295 ~aa~~i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~--------~~~~-----------------~~~~  347 (414)
                      ++|.||++...  ..+..+|+   .+|+.+-      +..+|.+..+        .+..                 +...
T Consensus       424 ~aa~ni~g~~~~~~~~~~ip~---~vft~pe------iA~vGlte~eA~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  494 (561)
T PTZ00058        424 LLADRLFGPFSRTTNYKLIPS---VIFSHPP------IGTIGLSEQEAIDIYGKENVKIYESRFTNLFFSVYDMDPAQKE  494 (561)
T ss_pred             HHHHHHhCCCCcccCCCCCCe---EEeCCch------heeeeCCHHHHHHhcCCCcEEEEEeecchhhhhhhcccccCCC
Confidence            99999997422  23444564   3444321      2233322110        0000                 0011


Q ss_pred             CcEEEEEEe--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCChh-h-hcCCCcHHHHHHHHhcCC
Q 014997          348 PKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDKA-K-LQQASSVEEALEIARAAL  408 (414)
Q Consensus       348 ~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~  408 (414)
                      .-+.++.++  +++|+|+++++.++.++... ..+|+.+.+++.- . +..||++.|++..++..+
T Consensus       495 ~g~~Kli~~~~t~~ILG~~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hPt~~e~~~~~~~~~  560 (561)
T PTZ00058        495 KTYLKLVCVGKEELIKGLHIVGLNADEILQGFAVALKMNATKADFDETIPIHPTAAEEFVTMAPWM  560 (561)
T ss_pred             CeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcccCCCChHHHHHHhccCC
Confidence            225566654  69999999877777776544 4567888888873 3 678999999999887654

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=100.00  E-value=3.9e-35  Score=287.07  Aligned_cols=270  Identities=23%  Similarity=0.298  Sum_probs=214.1

Q ss_pred             CCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCCCEEEe
Q 014997            2 ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLIT   81 (414)
Q Consensus         2 ~~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~   81 (414)
                      ++.+||||+++++++|. |.++. ++.+. ...+++           .....+++++++++++.+ +|+.||+++++|.+
T Consensus        24 ~~~~I~li~~~~~~~~~-~~~~~-~~~g~-~~~~~~-----------~~~~~~~~~~~gv~~~~~-~v~~id~~~~~V~~   88 (364)
T TIGR03169        24 PGVRVTLINPSSTTPYS-GMLPG-MIAGH-YSLDEI-----------RIDLRRLARQAGARFVIA-EATGIDPDRRKVLL   88 (364)
T ss_pred             CCCEEEEECCCCCCccc-chhhH-HHhee-CCHHHh-----------cccHHHHHHhcCCEEEEE-EEEEEecccCEEEE
Confidence            57899999999999998 55553 55442 222222           234566778889999985 89999999999999


Q ss_pred             CCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHH----HHHhh---cCCCeEEEECCChHHHHHHHHHHh
Q 014997           82 NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADA----LISSL---EKAKKVVVVGGGYIGMEVAAAAVG  154 (414)
Q Consensus        82 ~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~----~~~~~---~~~~~vvVvGgG~~g~e~A~~l~~  154 (414)
                      ++|+++.||+||||||+.+. .|.++| ..++++.+++++++..    +....   ..+++++|||+|++|+|+|..|++
T Consensus        89 ~~g~~~~yD~LviAtG~~~~-~~~i~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~  166 (364)
T TIGR03169        89 ANRPPLSYDVLSLDVGSTTP-LSGVEG-AADLAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRR  166 (364)
T ss_pred             CCCCcccccEEEEccCCCCC-CCCCCc-ccccccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHH
Confidence            99989999999999999986 455566 3456777788777665    33322   245799999999999999999975


Q ss_pred             ----CC--CcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEc
Q 014997          155 ----WK--LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG  228 (414)
Q Consensus       155 ----~g--~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a  228 (414)
                          +|  .+|+++ ..+.+++ .+++++...+.+.+++.||++++++.+++++.+      .+.+++|+++++|.+|++
T Consensus       167 ~~~~~g~~~~V~li-~~~~~l~-~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~------~v~~~~g~~i~~D~vi~a  238 (364)
T TIGR03169       167 RLPKRGLRGQVTLI-AGASLLP-GFPAKVRRLVLRLLARRGIEVHEGAPVTRGPDG------ALILADGRTLPADAILWA  238 (364)
T ss_pred             HHHhcCCCceEEEE-eCCcccc-cCCHHHHHHHHHHHHHCCCEEEeCCeeEEEcCC------eEEeCCCCEEecCEEEEc
Confidence                34  589999 6667776 478889999999999999999999999998632      567788999999999999


Q ss_pred             cCCcCCChhhhhcCCccc-CCCEEEcCCCCC-CCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997          229 IGAKPTVSPFERVGLNSS-VGGIQVDGQFRT-RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       229 ~G~~p~~~~l~~~gl~~~-~g~i~vd~~~~t-~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                      +|.+|+ .++...++..+ +|+|.||+++|| ++|||||+|||+..+....     ......|..||+.+|+||..
T Consensus       239 ~G~~p~-~~l~~~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~~-----~~~~~~A~~~g~~~a~ni~~  308 (364)
T TIGR03169       239 TGARAP-PWLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDAPR-----PKAGVYAVRQAPILAANLRA  308 (364)
T ss_pred             cCCChh-hHHHHcCCCcCCCCeEEECCccccCCCCCEEEeeeeeecCCCCC-----CCchHHHHHhHHHHHHHHHH
Confidence            999998 56777777764 588999999998 9999999999998654321     12455699999999999975

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=100.00  E-value=2.7e-34  Score=288.87  Aligned_cols=317  Identities=21%  Similarity=0.297  Sum_probs=230.1

Q ss_pred             HHH-cCCeEEcCCcEEEEeCCCCEEEeCC--------CcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHH
Q 014997           56 YKE-KGIEMIYQDPVTSIDIEKQTLITNS--------GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADAL  126 (414)
Q Consensus        56 ~~~-~~i~~~~~~~V~~id~~~~~V~~~~--------g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~  126 (414)
                      +++ .||+++.| +..-  .+.++|.+.+        .+.+.||+||||||++|.. |+++|.+  .+   .+..+...+
T Consensus       113 l~~~~gv~~i~G-~a~f--~~~~~v~V~~~~~~~~~~~~~~~~d~lIIATGs~p~~-p~i~G~~--~~---~~~~~~~~~  183 (486)
T TIGR01423       113 FADTEGLTFFLG-WGAL--EDKNVVLVRESADPKSAVKERLQAEHILLATGSWPQM-LGIPGIE--HC---ISSNEAFYL  183 (486)
T ss_pred             hhcCCCeEEEEE-EEEE--ccCCEEEEeeccCCCCCcceEEECCEEEEecCCCCCC-CCCCChh--he---echhhhhcc
Confidence            444 48999987 4433  3456666532        2479999999999999864 4444422  12   233333221


Q ss_pred             HHhhcCCCeEEEECCChHHHHHHHHHHhC---CCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEe
Q 014997          127 ISSLEKAKKVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  203 (414)
Q Consensus       127 ~~~~~~~~~vvVvGgG~~g~e~A~~l~~~---g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~  203 (414)
                         ...+++++|||||++|+|+|..+..+   |.+||++++.+++++ .+++++++.+.+.|+++||++++++.++++..
T Consensus       184 ---~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~-~~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~  259 (486)
T TIGR01423       184 ---DEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILR-GFDSTLRKELTKQLRANGINIMTNENPAKVTL  259 (486)
T ss_pred             ---ccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccc-ccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEE
Confidence               23579999999999999999877655   999999999999987 58999999999999999999999999999985


Q ss_pred             cCCCcEEEEEeCCCcEEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcc
Q 014997          204 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRT  280 (414)
Q Consensus       204 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~  280 (414)
                      .+++. ..+.+.+|+++++|.+++++|++|++++  +++++++.+ +|+|.||+++||+.|||||+|||+..+.      
T Consensus       260 ~~~~~-~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd~~l~Ts~~~IyA~GDv~~~~~------  332 (486)
T TIGR01423       260 NADGS-KHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFSRTNVPNIYAIGDVTDRVM------  332 (486)
T ss_pred             cCCce-EEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEecCCCCcCCCCCEEEeeecCCCcc------
Confidence            43432 3567778889999999999999999886  467888764 5779999999999999999999986432      


Q ss_pred             cccccHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeeeccCCCCCCcceeeeEeecCCCc-------E--E--------
Q 014997          281 ARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T--I--------  341 (414)
Q Consensus       281 ~~~~~~~~A~~~a~~aa~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~--~--------  341 (414)
                          ....|..||+.++.||++....  .+..+|+   ..|+.+-      +..+|....+       .  .        
T Consensus       333 ----l~~~A~~qG~~aa~ni~g~~~~~~~~~~vp~---~vft~pe------ia~vGlte~eA~~~~~~~~~~~~~~~~~~  399 (486)
T TIGR01423       333 ----LTPVAINEGAAFVDTVFGNKPRKTDHTRVAS---AVFSIPP------IGTCGLVEEDAAKKFEKVAVYESSFTPLM  399 (486)
T ss_pred             ----cHHHHHHHHHHHHHHHhCCCCcccCCCCCCE---EEeCCCc------eEEeeCCHHHHHhcCCceEEEEEeeCchh
Confidence                3445899999999999974332  2334564   4444321      3334433210       0  0        


Q ss_pred             --EEcCCC-CcEEEEEEe--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCCh-hh-hcCCCcHHHHHHHHh
Q 014997          342 --EIGNFD-PKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDK-AK-LQQASSVEEALEIAR  405 (414)
Q Consensus       342 --~~~~~~-~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~  405 (414)
                        ..+... .-|.++.++  +++|+|+++++..+.++... ..+|+.+.+++. .. +..||+++|++..+.
T Consensus       400 ~~~~~~~~~~g~~Klv~d~~~~~iLGa~ivg~~a~elI~~~~~ai~~~~t~~dl~~~~~~hPt~sE~~~~~~  471 (486)
T TIGR01423       400 HNISGSKYKKFVAKIVTNHADGTVLGVHLLGDSSPEIIQAVGICLKLNAKISDFYNTIGVHPTSAEELCSMR  471 (486)
T ss_pred             hhhccCccCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcccCCCCcHHHHHhhc
Confidence              001111 125666664  58999999877777776554 446788888887 33 679999999999986

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK13748 putative mercuric reductase; Provisional

Probab=100.00  E-value=4.6e-34  Score=294.71  Aligned_cols=322  Identities=19%  Similarity=0.275  Sum_probs=233.4

Q ss_pred             HHc-CCeEEcCCcEEEEeCCCCEEEeCCCc--EEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCC
Q 014997           57 KEK-GIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA  133 (414)
Q Consensus        57 ~~~-~i~~~~~~~V~~id~~~~~V~~~~g~--~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~  133 (414)
                      ++. +|+++.+ +++.+++....|.+.+|+  ++.||+||||||++|. .|.++|.+...  ...+.+    .......+
T Consensus       199 ~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~-~p~i~g~~~~~--~~~~~~----~~~~~~~~  270 (561)
T PRK13748        199 DGNPAITVLHG-EARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPA-VPPIPGLKETP--YWTSTE----ALVSDTIP  270 (561)
T ss_pred             hccCCeEEEEE-EEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCC-CCCCCCCCccc--eEccHH----HhhcccCC
Confidence            444 8999986 788888776677776663  6999999999999986 45555533211  222111    11112356


Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEE
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK  213 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~  213 (414)
                      ++++|||+|++|+|+|..|+++|.+|+++++. .+++. ++++++..+.+.+++.||++++++.+++++.+ ++. ..+.
T Consensus       271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~-~~l~~-~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~-~~~-~~v~  346 (561)
T PRK13748        271 ERLAVIGSSVVALELAQAFARLGSKVTILARS-TLFFR-EDPAIGEAVTAAFRAEGIEVLEHTQASQVAHV-DGE-FVLT  346 (561)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecC-ccccc-cCHHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCE-EEEE
Confidence            89999999999999999999999999999985 56654 78999999999999999999999999999754 332 2355


Q ss_pred             eCCCcEEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHH
Q 014997          214 LEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHAR  290 (414)
Q Consensus       214 ~~~g~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~  290 (414)
                      ++++ ++++|.|++++|.+||+.+  ++++|+..+ +|+|.||+++||+.|||||+|||+..+.          ....|.
T Consensus       347 ~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~~~IyA~GD~~~~~~----------~~~~A~  415 (561)
T PRK13748        347 TGHG-ELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRTSVPHIYAAGDCTDQPQ----------FVYVAA  415 (561)
T ss_pred             ecCC-eEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCcccCCCCEEEeeecCCCcc----------chhHHH
Confidence            5555 6999999999999999975  577888875 5779999999999999999999997643          334588


Q ss_pred             HHHHHHHHHHhcCCC-CCCCCCCceeeeccCCCCCCcceeeeEeecCCC-------cE--EEE----------cCCCCcE
Q 014997          291 QSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ET--IEI----------GNFDPKI  350 (414)
Q Consensus       291 ~~a~~aa~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~--~~~----------~~~~~~~  350 (414)
                      .+|+.||.||++... .++..+|+.  ..++..       +..+|....       +.  ...          .....-|
T Consensus       416 ~~g~~aa~~i~g~~~~~~~~~~p~~--~~~~p~-------~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~  486 (561)
T PRK13748        416 AAGTRAAINMTGGDAALDLTAMPAV--VFTDPQ-------VATVGYSEAEAHHDGIETDSRTLTLDNVPRALANFDTRGF  486 (561)
T ss_pred             HHHHHHHHHHcCCCcccCCCCCCeE--EEccCC-------ceeeeCCHHHHHHcCCCeEEEEEecccCchhhhcCCCCeE
Confidence            999999999996432 123345532  222221       334444321       00  000          0011236


Q ss_pred             EEEEEe--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCChhh--hcCCCcHHHHHHHHhcCCCc
Q 014997          351 ATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDKAK--LQQASSVEEALEIARAALPV  410 (414)
Q Consensus       351 ~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  410 (414)
                      .++.++  +++|+|+++++..+.++... ..+|+.+.+++.-.  +..||++.|.+.+|++.+..
T Consensus       487 ~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~~~~  551 (561)
T PRK13748        487 IKLVIEEGSGRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVEGLKLAAQTFNK  551 (561)
T ss_pred             EEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcccccCCchHHHHHHHHHHhhc
Confidence            677775  69999999876667665544 45678898888733  67899999999999976543

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=100.00  E-value=6.4e-34  Score=285.13  Aligned_cols=316  Identities=19%  Similarity=0.264  Sum_probs=233.9

Q ss_pred             cCCeEEcCCcEEEEeCCCCEEEeCCCc-EEecCeEEEccCCCCCCCCCCCCCC-CCCEEEecCHHHHHHHHHhhcCCCeE
Q 014997           59 KGIEMIYQDPVTSIDIEKQTLITNSGK-LLKYGSLIVATGCTASRFPEKIGGY-LPGVHYIRDVADADALISSLEKAKKV  136 (414)
Q Consensus        59 ~~i~~~~~~~V~~id~~~~~V~~~~g~-~~~yd~LviAtG~~~~~~~~~~g~~-~~gv~~~~~~~~~~~~~~~~~~~~~v  136 (414)
                      .+++++.+ ++..++.....|.+.+|. ++.||+||||||++|.. |.++|.+ .+++++.      ..+......++++
T Consensus        90 ~gv~~~~g-~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~~-p~i~G~~~~~~v~~~------~~~~~~~~~~~~v  161 (441)
T PRK08010         90 PNIDVIDG-QAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVV-PPIPGITTTPGVYDS------TGLLNLKELPGHL  161 (441)
T ss_pred             CCcEEEEE-EEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCCC-CCCCCccCCCCEECh------hHhhcccccCCeE
Confidence            48999986 788888877777777775 69999999999999864 5566643 4555432      2222223457899


Q ss_pred             EEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCC
Q 014997          137 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED  216 (414)
Q Consensus       137 vVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~  216 (414)
                      +|||+|++|+|+|..|+++|.+|+++++.+++++. +++++...+.+.+++.||++++++.+++++.+ ++.+ .+.+++
T Consensus       162 ~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~-~~~v-~v~~~~  238 (441)
T PRK08010        162 GILGGGYIGVEFASMFANFGSKVTILEAASLFLPR-EDRDIADNIATILRDQGVDIILNAHVERISHH-ENQV-QVHSEH  238 (441)
T ss_pred             EEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC-cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCEE-EEEEcC
Confidence            99999999999999999999999999999998875 68899999999999999999999999999854 3332 445555


Q ss_pred             CcEEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHH
Q 014997          217 GSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSA  293 (414)
Q Consensus       217 g~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a  293 (414)
                      + ++++|.+++++|.+||+++  ++++|+..+ +|+|.||+++||+.|||||+|||+..+.          ....|..+|
T Consensus       239 g-~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~----------~~~~a~~~~  307 (441)
T PRK08010        239 A-QLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHTTADNIWAMGDVTGGLQ----------FTYISLDDY  307 (441)
T ss_pred             C-eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCcc----------chhHHHHHH
Confidence            5 5999999999999999876  467788764 5789999999999999999999998543          233488899


Q ss_pred             HHHHHHHhcCCCC---CCCCCCceeeeccCCCCCCcceeeeEeecCCCc-------E--EE-----------EcCCCCcE
Q 014997          294 QHCIKALLSAQTH---TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T--IE-----------IGNFDPKI  350 (414)
Q Consensus       294 ~~aa~~i~~~~~~---~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~--~~-----------~~~~~~~~  350 (414)
                      +.++.||++....   .+..+|+.   +|..+      .+..+|....+       .  ..           .++. ..+
T Consensus       308 ~~~~~~~~g~~~~~~~~~~~~p~~---~~~~p------~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~-~g~  377 (441)
T PRK08010        308 RIVRDELLGEGKRSTDDRKNVPYS---VFMTP------PLSRVGMTEEQARESGADIQVVTLPVAAIPRARVMNDT-RGV  377 (441)
T ss_pred             HHHHHHHcCCCCcccCccCCCCEE---EECCC------CceeeeCCHHHHHHcCCCeEEEEEecCcChhhhhcCCC-ceE
Confidence            9999999963221   23345542   33221      13344433210       0  00           1111 226


Q ss_pred             EEEEEe--CCEEEEEEeecCChHHhhHHH-HHHhCCCCCChh--hhcCCCcHHHHHHHHhc
Q 014997          351 ATFWID--SGKLKGVLVESGSPEEFQLLP-TLARSQPFVDKA--KLQQASSVEEALEIARA  406 (414)
Q Consensus       351 ~~~~~~--~~~~~g~~~~~~~~~~~~~~~-~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~  406 (414)
                      .++.++  +++|+|+++++.++.++...- -+|+.+.+++.-  .+..||++.|.+..++.
T Consensus       378 ~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~  438 (441)
T PRK08010        378 LKAIVDNKTQRILGASLLCVDSHEMINIVKMVMDAGLPYSILRDQIFTHPSMSESLNDLFS  438 (441)
T ss_pred             EEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhccccCCchHHHHHHHHH
Confidence            677664  699999998777776665554 467888888873  36789999999988864

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=1.9e-33  Score=283.44  Aligned_cols=320  Identities=24%  Similarity=0.346  Sum_probs=227.4

Q ss_pred             cCCeEEcCCcEEEEeCCCCEEEeCCC--cEEecCeEEEccCCCCCCCCCCCCCCC-CCEEEecCHHHHHHHHHhhcCCCe
Q 014997           59 KGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGGYL-PGVHYIRDVADADALISSLEKAKK  135 (414)
Q Consensus        59 ~~i~~~~~~~V~~id~~~~~V~~~~g--~~~~yd~LviAtG~~~~~~~~~~g~~~-~gv~~~~~~~~~~~~~~~~~~~~~  135 (414)
                      .+|+++.+ +..-++...-.|...+|  +++.||+||||||++|+.+   |+.+. ..+++.   .+.  +. ....+++
T Consensus       105 ~~v~~i~g-~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~---pg~~~~~~v~~~---~~~--~~-~~~~~~~  174 (466)
T PRK07818        105 NKITEIHG-YGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRLL---PGTSLSENVVTY---EEQ--IL-SRELPKS  174 (466)
T ss_pred             CCCEEEEE-EEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCC---CCCCCCCcEEch---HHH--hc-cccCCCe
Confidence            46666654 33323332223444455  3699999999999998643   34332 233332   221  11 1124689


Q ss_pred             EEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeC
Q 014997          136 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE  215 (414)
Q Consensus       136 vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~  215 (414)
                      ++|||+|++|+|+|..|+++|.+|+++++.+++++. ++++++..+.+.|+++||++++++.|++++.+ ++.+ .+.+.
T Consensus       175 vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~~-~v~~~  251 (466)
T PRK07818        175 IVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPN-EDAEVSKEIAKQYKKLGVKILTGTKVESIDDN-GSKV-TVTVS  251 (466)
T ss_pred             EEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCc-cCHHHHHHHHHHHHHCCCEEEECCEEEEEEEe-CCeE-EEEEE
Confidence            999999999999999999999999999999999985 78999999999999999999999999999754 2222 33443


Q ss_pred             --CC--cEEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHH
Q 014997          216 --DG--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDH  288 (414)
Q Consensus       216 --~g--~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~  288 (414)
                        +|  +++++|.|++++|.+||+++  +++.|+..+ +|+|.||+++||+.|+|||+|||+..+.          .+..
T Consensus       252 ~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~p~IyAiGD~~~~~~----------l~~~  321 (466)
T PRK07818        252 KKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRTNVPHIYAIGDVTAKLQ----------LAHV  321 (466)
T ss_pred             ecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCcccCCCCEEEEeecCCCcc----------cHhH
Confidence              56  47999999999999999885  578888764 5779999999999999999999986421          5667


Q ss_pred             HHHHHHHHHHHHhcCCCC---CCCCCCceeeeccCCCCCCcceeeeEeecCCCc-------E--EE-----------EcC
Q 014997          289 ARQSAQHCIKALLSAQTH---TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T--IE-----------IGN  345 (414)
Q Consensus       289 A~~~a~~aa~~i~~~~~~---~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~--~~-----------~~~  345 (414)
                      |..||+.||.||++....   .+..+|+.   .|..+      .+..+|....+       .  ..           .+.
T Consensus       322 A~~~g~~aa~~i~g~~~~~~~~~~~~p~~---~~~~p------~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~  392 (466)
T PRK07818        322 AEAQGVVAAETIAGAETLELGDYRMMPRA---TFCQP------QVASFGLTEEQAREEGYDVKVAKFPFTANGKAHGLGD  392 (466)
T ss_pred             HHHHHHHHHHHHcCCCCCccCccCCCCeE---EECCC------CeEEEeCCHHHHHhCCCcEEEEEEECCccchhhhcCC
Confidence            999999999999974322   34445642   23221      13444543211       0  00           111


Q ss_pred             CCCcEEEEEEe--CCEEEEEEeecCChHHhhHHH-HHHhCCCCCCh-hh-hcCCCcHHHHHHHHhcCCCcc
Q 014997          346 FDPKIATFWID--SGKLKGVLVESGSPEEFQLLP-TLARSQPFVDK-AK-LQQASSVEEALEIARAALPVE  411 (414)
Q Consensus       346 ~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~-~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~  411 (414)
                       ..-|.++.++  +++|+|+++++..+.++...- -+|+.+.+++. .. +..||++.|++.+|++.+..+
T Consensus       393 -~~g~~Klv~~~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~~  462 (466)
T PRK07818        393 -PTGFVKLVADAKYGELLGGHLIGPDVSELLPELTLAQKWDLTAEELARNVHTHPTLSEALKEAFHGLAGH  462 (466)
T ss_pred             -CCeEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCccCCCchHHHHHHHHHHhhcC
Confidence             1225666664  589999998777777665544 45788888887 33 678999999999999877654

>PRK14727 putative mercuric reductase; Provisional

Probab=100.00  E-value=1.4e-33  Score=284.82  Aligned_cols=318  Identities=19%  Similarity=0.250  Sum_probs=228.3

Q ss_pred             CCeEEcCCcEEEEeCCCCEEEeCCCc--EEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCCeEE
Q 014997           60 GIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVV  137 (414)
Q Consensus        60 ~i~~~~~~~V~~id~~~~~V~~~~g~--~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vv  137 (414)
                      +|+++.| ++.-++.....|.+.+|+  ++.||+||||||++|+. |.++|.+....  ..+ .+.  +. ....+++++
T Consensus       121 ~v~~i~G-~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~-p~i~G~~~~~~--~~~-~~~--l~-~~~~~k~vv  192 (479)
T PRK14727        121 ALTLLKG-YARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPTI-PPIPGLMDTPY--WTS-TEA--LF-SDELPASLT  192 (479)
T ss_pred             CeEEEEE-EEEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCCC-CCCCCcCccce--ecc-hHH--hc-cccCCCeEE
Confidence            8999886 566566555566666764  69999999999999864 55555322222  111 111  11 123468999


Q ss_pred             EECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCC
Q 014997          138 VVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG  217 (414)
Q Consensus       138 VvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g  217 (414)
                      |||+|++|+|+|..|+++|.+|+++++. ++++. +++++.+.+.+.+++.||++++++.+++++..+++  ..+.++++
T Consensus       193 VIGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~l~~-~d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~--~~v~~~~g  268 (479)
T PRK14727        193 VIGSSVVAAEIAQAYARLGSRVTILARS-TLLFR-EDPLLGETLTACFEKEGIEVLNNTQASLVEHDDNG--FVLTTGHG  268 (479)
T ss_pred             EECCCHHHHHHHHHHHHcCCEEEEEEcC-CCCCc-chHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCE--EEEEEcCC
Confidence            9999999999999999999999999874 66764 78999999999999999999999999999754332  24555555


Q ss_pred             cEEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHH
Q 014997          218 STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQ  294 (414)
Q Consensus       218 ~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~  294 (414)
                       ++++|.+++++|..||+.+  ++++++..+ +|+|.||+++||+.|+|||+|||+..+.          ....|..+|+
T Consensus       269 -~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~Ts~~~IyA~GD~~~~~~----------~~~~A~~~G~  337 (479)
T PRK14727        269 -ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMETSAPDIYAAGDCSDLPQ----------FVYVAAAAGS  337 (479)
T ss_pred             -eEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCeecCCCCEEEeeecCCcch----------hhhHHHHHHH
Confidence             6999999999999999885  567788765 5779999999999999999999997543          2345889999


Q ss_pred             HHHHHHhcCCC-CCCCCCCceeeeccCCCCCCcceeeeEeecCCCc-------E---EE---------EcCCCCcEEEEE
Q 014997          295 HCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T---IE---------IGNFDPKIATFW  354 (414)
Q Consensus       295 ~aa~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~---~~---------~~~~~~~~~~~~  354 (414)
                      .+|.||++... ..+..+|+.   .|..+      .+..+|....+       .   ..         .+....-+.+++
T Consensus       338 ~aa~~i~g~~~~~~~~~~p~~---~~~~p------~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kli  408 (479)
T PRK14727        338 RAGINMTGGNATLDLSAMPAV---IFTDP------QVATVGLSEAKAHLSGIETISRVLTMENVPRALANFETDGFIKLV  408 (479)
T ss_pred             HHHHHHcCCCcccccccCCcE---EEecC------ceeeeeCCHHHHHHcCCceEEEEEEcccCchhhhcCCCCeEEEEE
Confidence            99999996432 123345543   23221      13344443211       0   00         000112366776


Q ss_pred             Ee--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCCh-hh-hcCCCcHHHHHHHHhcCCC
Q 014997          355 ID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDK-AK-LQQASSVEEALEIARAALP  409 (414)
Q Consensus       355 ~~--~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~  409 (414)
                      ++  +++|+|+++++..+.++... .-+|+.+.+++. .. ...||+++|++..|++.+.
T Consensus       409 ~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~E~~~~~~~~~~  468 (479)
T PRK14727        409 AEEGTRKLIGAQILAHEGGELIQSAALAIHNRMTVEELADQLFPYLTMVEGLKLCAQTFR  468 (479)
T ss_pred             EECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCCccCCChHHHHHHHHHhhh
Confidence            64  69999999877777666544 456788888888 33 6789999999999997654

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=100.00  E-value=1.8e-33  Score=283.57  Aligned_cols=322  Identities=21%  Similarity=0.253  Sum_probs=227.3

Q ss_pred             HHHHcCCeEEcCCcEEEEeCCCCEEEeCCC--cEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcC
Q 014997           55 WYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK  132 (414)
Q Consensus        55 ~~~~~~i~~~~~~~V~~id~~~~~V~~~~g--~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~  132 (414)
                      .++..+|+++.| +..-+++..-.|...+|  +.+.||+||||||++|+. |.++|...    ...+..   .+......
T Consensus       109 ~~~~~~v~~i~G-~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~-p~ipG~~~----~~~~~~---~~~~~~~~  179 (484)
T TIGR01438       109 ALREKKVNYENA-YAEFVDKHRIKATNKKGKEKIYSAERFLIATGERPRY-PGIPGAKE----LCITSD---DLFSLPYC  179 (484)
T ss_pred             HHhhCCcEEEEE-EEEEcCCCEEEEeccCCCceEEEeCEEEEecCCCCCC-CCCCCccc----eeecHH---Hhhccccc
Confidence            466789999987 55555544323332343  369999999999999864 44455321    111222   23222235


Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEE
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV  212 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v  212 (414)
                      +++++|||+|++|+|+|..|+++|.+||++++ +++++ .+++++++.+.+.|+++||++++++.+.+++..++ . ..+
T Consensus       180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~~~l~-~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~-~-~~v  255 (484)
T TIGR01438       180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILLR-GFDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIEA-K-VKV  255 (484)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEe-ccccc-ccCHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCC-e-EEE
Confidence            67899999999999999999999999999997 46775 58999999999999999999999999999875433 2 245


Q ss_pred             EeCCC---cEEecCEEEEccCCcCCChh--hhhcCCccc--CCCEEEcCCCCCCCCcEEEEccccccCCccCCccccccc
Q 014997          213 KLEDG---STIDADTIVIGIGAKPTVSP--FERVGLNSS--VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEH  285 (414)
Q Consensus       213 ~~~~g---~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~--~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~  285 (414)
                      .+.++   +++++|.|++++|++||+++  +++.|+..+  +|+|.||+++||+.|+|||+|||+....         ..
T Consensus       256 ~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~~Ts~p~IyA~GDv~~~~~---------~l  326 (484)
T TIGR01438       256 TFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEEQTNVPYIYAVGDILEDKQ---------EL  326 (484)
T ss_pred             EEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCCCcccCCCCEEEEEEecCCCc---------cc
Confidence            55555   37999999999999999986  567888764  3779999999999999999999986321         13


Q ss_pred             HHHHHHHHHHHHHHHhcCCC--CCCCCCCceeeeccCCCCCCcceeeeEeecCCCc---------E-EEEcCC-------
Q 014997          286 VDHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE---------T-IEIGNF-------  346 (414)
Q Consensus       286 ~~~A~~~a~~aa~~i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~---------~-~~~~~~-------  346 (414)
                      ...|..||+.+|+||++...  ..+..+|+.   .|..+      .+..+|....+         . +....+       
T Consensus       327 ~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~---i~~~p------~ia~vGlte~~a~~~~g~~~~~~~~~~~~~~~~~~  397 (484)
T TIGR01438       327 TPVAIQAGRLLAQRLFSGSTVICDYENVPTT---VFTPL------EYGACGLSEEKAVEKFGEENIEVFHSYFWPLEWTI  397 (484)
T ss_pred             hHHHHHHHHHHHHHHhcCCCcccccccCCeE---EeCCC------ceeeecCCHHHHHHhcCCCcEEEEEeecchhhhHh
Confidence            45699999999999996432  235556653   33322      12333432110         0 000000       


Q ss_pred             ------CCcEEEEEE-e--CCEEEEEEeecCChHHhhH-HHHHHhCCCCCCh-hh-hcCCCcHHHHHHHHhcC
Q 014997          347 ------DPKIATFWI-D--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK-AK-LQQASSVEEALEIARAA  407 (414)
Q Consensus       347 ------~~~~~~~~~-~--~~~~~g~~~~~~~~~~~~~-~~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~  407 (414)
                            ..-|.++.+ +  +++|+|+++++.++.++.. +..+|+.+.+++. .. ...||++.|++.+++..
T Consensus       398 ~~~~~~~~g~~Kli~~~~~t~~ILG~~ivg~~a~e~I~~~a~ai~~~~t~~dl~~~~~~hPt~sE~~~~~~~~  470 (484)
T TIGR01438       398 PSRDNSNKCYAKAVCNRKENERVVGFHVVGPNAGEVTQGFAAALRCGLTKKDLDNTIGIHPVCAEVFTTLSVT  470 (484)
T ss_pred             hCCCccCCcEEEEEEecCCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhhhcCCCChHHHHHHhhhh
Confidence                  112555554 3  5899999987766766654 4456788888887 22 67899999999998855

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=100.00  E-value=3.9e-33  Score=286.99  Aligned_cols=319  Identities=19%  Similarity=0.284  Sum_probs=225.6

Q ss_pred             CeEEcCCcEEEEeCCCCEEEe-CCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCCeEEEE
Q 014997           61 IEMIYQDPVTSIDIEKQTLIT-NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVV  139 (414)
Q Consensus        61 i~~~~~~~V~~id~~~~~V~~-~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVv  139 (414)
                      ++++.+ +..-+  +.++|.+ .+|+++.||+||||||++|.. |..++.+.+++++.   +++..+.   ..+++++||
T Consensus       249 v~vi~G-~a~f~--~~~~v~v~~~g~~i~ad~lIIATGS~P~~-P~~~~~~~~~V~ts---~d~~~l~---~lpk~VvIV  318 (659)
T PTZ00153        249 VQVIYE-RGHIV--DKNTIKSEKSGKEFKVKNIIIATGSTPNI-PDNIEVDQKSVFTS---DTAVKLE---GLQNYMGIV  318 (659)
T ss_pred             eEEEEe-EEEEe--cCCeEEEccCCEEEECCEEEEcCCCCCCC-CCCCCCCCCcEEeh---HHhhhhh---hcCCceEEE
Confidence            677765 33222  3445554 367789999999999999864 43333333445543   3444332   247899999


Q ss_pred             CCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHH-HhCCcEEEcCceEEEEEecCCCcEEEEEeCC--
Q 014997          140 GGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY-QQNGVKFVKGASIKNLEAGSDGRVAAVKLED--  216 (414)
Q Consensus       140 GgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l-~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~--  216 (414)
                      |+|++|+|+|..|+++|.+||++++.+++++ .+++++++.+.+.+ ++.||++++++.|++++.++++....+.+.+  
T Consensus       319 GgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~-~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~  397 (659)
T PTZ00153        319 GMGIIGLEFMDIYTALGSEVVSFEYSPQLLP-LLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQ  397 (659)
T ss_pred             CCCHHHHHHHHHHHhCCCeEEEEeccCcccc-cCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccc
Confidence            9999999999999999999999999999998 58999999988875 6799999999999999865433322343321  


Q ss_pred             -----C--------cEEecCEEEEccCCcCCChh--hhhcCCcccCCCEEEcCCCCCC------CCcEEEEccccccCCc
Q 014997          217 -----G--------STIDADTIVIGIGAKPTVSP--FERVGLNSSVGGIQVDGQFRTR------MPGIFAIGDVAAFPLK  275 (414)
Q Consensus       217 -----g--------~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~~g~i~vd~~~~t~------~~~IyA~GD~a~~~~~  275 (414)
                           +        +++++|.|++|+|.+||++.  +++.++..++|+|.||++|||+      +|+|||+|||+..+. 
T Consensus       398 ~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~~gi~~~~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~~-  476 (659)
T PTZ00153        398 TGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQMKRGFVSVDEHLRVLREDQEVYDNIFCIGDANGKQM-  476 (659)
T ss_pred             cccccccccccccceEEEcCEEEEEECcccCCccCCchhcCCcccCCEEeECCCCCcCCCCCCCCCCEEEEEecCCCcc-
Confidence                 1        37999999999999999987  4677887777789999999997      699999999985421 


Q ss_pred             cCCcccccccHHHHHHHHHHHHHHHhcCC------------CC--CCCCCCceeeeccCCCCCCcceeeeEeecCCCc--
Q 014997          276 MYDRTARVEHVDHARQSAQHCIKALLSAQ------------TH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE--  339 (414)
Q Consensus       276 ~~~~~~~~~~~~~A~~~a~~aa~~i~~~~------------~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~--  339 (414)
                               ....|..||+.+++||.+..            ..  .|..+|+.   .|..+      .+.++|..+.+  
T Consensus       477 ---------La~~A~~qg~~aa~ni~g~~~~~~~~~~~~~~~~~~~~~~iP~~---ift~P------eiA~VGlTE~eA~  538 (659)
T PTZ00153        477 ---------LAHTASHQALKVVDWIEGKGKENVNINVENWASKPIIYKNIPSV---CYTTP------ELAFIGLTEKEAK  538 (659)
T ss_pred             ---------CHHHHHHHHHHHHHHHcCCCccccccccccccccccccCcCCEE---EECcC------ceEEeeCCHHHHH
Confidence                     34569999999999998742            11  23445542   22211      02223322110  


Q ss_pred             --------------------EEEEcC---------------------CCCcEEEEEEe--CCEEEEEEeecCChHHhhHH
Q 014997          340 --------------------TIEIGN---------------------FDPKIATFWID--SGKLKGVLVESGSPEEFQLL  376 (414)
Q Consensus       340 --------------------~~~~~~---------------------~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~  376 (414)
                                          ....+.                     ...-+.++.++  +++|+|+++++.++.++...
T Consensus       539 ~~g~~~~v~v~~~~~~~~~ra~~~~~~~~p~~~~~~~y~~g~~~~~~~~~G~vKli~d~~t~rILGa~ivG~~A~elI~~  618 (659)
T PTZ00153        539 ELYPPDNVGVEISFYKANSKVLCENNISFPNNSKNNSYNKGKYNTVDNTEGMVKIVYLKDTKEILGMFIVGSYASILIHE  618 (659)
T ss_pred             hcCCCcceEEEEEEecccchhhhccccccccccccccccccccccccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHH
Confidence                                000000                     01225666664  68999999877788777655


Q ss_pred             HH-HHhCCCCCCh-hh-hcCCCcHHHHHHHHhcCCC
Q 014997          377 PT-LARSQPFVDK-AK-LQQASSVEEALEIARAALP  409 (414)
Q Consensus       377 ~~-l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~  409 (414)
                      -. +|+.+.+++. .. +..||+++|.+.+|++++.
T Consensus       619 ~a~aI~~~~tv~dl~~~~~~hPT~sE~~~~a~~~~~  654 (659)
T PTZ00153        619 GVLAINLKLSVKDLAHMVHSHPTISEVLDAAFKAIA  654 (659)
T ss_pred             HHHHHHCCCCHHHHhhCcCCCCChHHHHHHHHHHHH
Confidence            44 5788888887 33 6789999999999998765

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=7.2e-33  Score=278.52  Aligned_cols=323  Identities=19%  Similarity=0.242  Sum_probs=231.7

Q ss_pred             HHHcCCeEEcCCcEEEEeCCCCEEEeCCC-cEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCC
Q 014997           56 YKEKGIEMIYQDPVTSIDIEKQTLITNSG-KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK  134 (414)
Q Consensus        56 ~~~~~i~~~~~~~V~~id~~~~~V~~~~g-~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~  134 (414)
                      +++.+++++.+ ++..+|.....|..+++ +++.||+||||||++|+.+| +++.+...+++.   .++   ......++
T Consensus       100 ~~~~~v~~~~g-~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p-~~~~~~~~v~~~---~~~---~~~~~~~~  171 (458)
T PRK06912        100 MKKNKIKVIQG-KASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELP-FAPFDGKWIINS---KHA---MSLPSIPS  171 (458)
T ss_pred             HhhCCcEEEEE-EEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCCCCC-CCCCCCCeEEcc---hHH---hCccccCC
Confidence            45568999886 67767665555665555 37999999999999986544 344333333322   222   22223468


Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEe
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL  214 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~  214 (414)
                      +++|||+|++|+|+|..|+++|.+|+++++.+++++. +++++.+.+.+.+++.||++++++.+++++.++ .. ..+..
T Consensus       172 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~-~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~-~~-v~~~~  248 (458)
T PRK06912        172 SLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPG-EDEDIAHILREKLENDGVKIFTGAALKGLNSYK-KQ-ALFEY  248 (458)
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCcc-ccHHHHHHHHHHHHHCCCEEEECCEEEEEEEcC-CE-EEEEE
Confidence            9999999999999999999999999999999999874 788999999999999999999999999997542 22 22332


Q ss_pred             CCC--cEEecCEEEEccCCcCCChh--hhhcCCcccCCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHH
Q 014997          215 EDG--STIDADTIVIGIGAKPTVSP--FERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHAR  290 (414)
Q Consensus       215 ~~g--~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~  290 (414)
                       +|  ++++||.|++++|.+|+.+.  ++..++..++++|.||+++||+.|||||+|||+..+.          .+..|.
T Consensus       249 -~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~gi~Vd~~~~ts~~~VyA~GD~~~~~~----------la~~A~  317 (458)
T PRK06912        249 -EGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKGISVNEHMQTNVPHIYACGDVIGGIQ----------LAHVAF  317 (458)
T ss_pred             -CCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCCEEeCCCeecCCCCEEEEeecCCCcc----------cHHHHH
Confidence             34  36999999999999999875  4677887765679999999999999999999986322          455699


Q ss_pred             HHHHHHHHHHhcCCCC-CCCCCCceeeeccCCCCCCcceeeeEeecCCC-------cEEE-------------EcCCCCc
Q 014997          291 QSAQHCIKALLSAQTH-TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETIE-------------IGNFDPK  349 (414)
Q Consensus       291 ~~a~~aa~~i~~~~~~-~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~~~-------------~~~~~~~  349 (414)
                      .+|+.+|.++.+.... .+..+|..   .|..+      .+..+|....       +...             .+. ..-
T Consensus       318 ~~g~~aa~~~~g~~~~~~~~~~p~~---v~~~p------~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~-~~g  387 (458)
T PRK06912        318 HEGTTAALHASGEDVKVNYHAVPRC---IYTSP------EIASVGLTEKQAREQYGDIRIGEFPFTANGKALIIGE-QTG  387 (458)
T ss_pred             HHHHHHHHHHcCCCCCCCcCCCCeE---EecCc------hhEEeeCCHHHHHHCCCCeEEEEEecCcchhHhhcCC-Cce
Confidence            9999999999864321 23456653   23211      0233343221       0000             011 122


Q ss_pred             EEEEEEe--CCEEEEEEeecCChHHhhH-HHHHHhCCCCCCh-hh-hcCCCcHHHHHHHHhcCCCc
Q 014997          350 IATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK-AK-LQQASSVEEALEIARAALPV  410 (414)
Q Consensus       350 ~~~~~~~--~~~~~g~~~~~~~~~~~~~-~~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~  410 (414)
                      +.++.++  +++|+|+++++.++.++.. +..+|+.+.+++. .+ +..||++.|++.+|++.+..
T Consensus       388 ~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~  453 (458)
T PRK06912        388 KVKVIVEPKYQEIVGISIIGPRATELIGQGTVMIHTEVTADIMEDFIAAHPTLSEAIHEALLQAVG  453 (458)
T ss_pred             EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCCHHHHHHHHHHHhhc
Confidence            5677664  5899999987767766554 4456788888877 23 67899999999999876543

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=100.00  E-value=1.1e-32  Score=277.91  Aligned_cols=327  Identities=21%  Similarity=0.286  Sum_probs=235.2

Q ss_pred             HHHHcCCeEEcCCcEEEEeCCCCEEEeCCC-cEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCC
Q 014997           55 WYKEKGIEMIYQDPVTSIDIEKQTLITNSG-KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA  133 (414)
Q Consensus        55 ~~~~~~i~~~~~~~V~~id~~~~~V~~~~g-~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~  133 (414)
                      .+++.|++++.+ ++..+++....|...+| .++.||+||||||++|+.+| .+ ...++. .+.+..+...+   ...+
T Consensus        98 ~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~-~~-~~~~~~-~~~~~~~~~~~---~~~~  170 (461)
T TIGR01350        98 LLKKNKVTVIKG-EAKFLDPGTVLVTGENGEETLTAKNIIIATGSRPRSLP-GP-FDFDGE-VVITSTGALNL---KEVP  170 (461)
T ss_pred             HHHhCCCEEEEE-EEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCC-CC-CCCCCc-eEEcchHHhcc---ccCC
Confidence            345678999986 56666655555555554 47999999999999987543 32 122332 22233333322   2356


Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEE
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK  213 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~  213 (414)
                      ++++|||+|.+|+|+|..|+++|.+|+++++.+++++ .+++++...+.+.+++.||++++++.+.+++.++ +.+ .+.
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~-~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~-~~v-~v~  247 (461)
T TIGR01350       171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP-GEDAEVSKVVAKALKKKGVKILTNTKVTAVEKND-DQV-VYE  247 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC-CCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeC-CEE-EEE
Confidence            8999999999999999999999999999999999887 5888999999999999999999999999997543 333 355


Q ss_pred             eCCC--cEEecCEEEEccCCcCCCh--hhhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHH
Q 014997          214 LEDG--STIDADTIVIGIGAKPTVS--PFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDH  288 (414)
Q Consensus       214 ~~~g--~~i~~D~vi~a~G~~p~~~--~l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~  288 (414)
                      +.+|  +++++|.+|+++|.+|+..  ++++.++..+ +|+|.||+++||+.|+|||+|||+..+.          .+..
T Consensus       248 ~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~IyaiGD~~~~~~----------~~~~  317 (461)
T TIGR01350       248 NKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMRTNVPGIYAIGDVIGGPM----------LAHV  317 (461)
T ss_pred             EeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCCcccCCCCEEEeeecCCCcc----------cHHH
Confidence            5666  5799999999999999988  5788888765 4779999999999999999999987432          4667


Q ss_pred             HHHHHHHHHHHHhcCCCCCC--CCCCceeeeccCCCCCCcceeeeEeecCCC-------cE--EEE----------cCCC
Q 014997          289 ARQSAQHCIKALLSAQTHTY--DYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ET--IEI----------GNFD  347 (414)
Q Consensus       289 A~~~a~~aa~~i~~~~~~~~--~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~--~~~----------~~~~  347 (414)
                      |..+|+.+|.||.+.....+  ...|+.  ..++..       +..+|....       +.  ...          .+..
T Consensus       318 A~~~g~~aa~~i~~~~~~~~~~~~~~~~--~~~~~~-------~a~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~  388 (461)
T TIGR01350       318 ASHEGIVAAENIAGKEPAPIDYDAVPSC--IYTDPE-------VASVGLTEEQAKEAGYDVKIGKFPFAANGKALALGET  388 (461)
T ss_pred             HHHHHHHHHHHHcCCCCCCCCCCCCCeE--EecCCc-------eEEEeCCHHHHHhCCCCeEEEEEeCccchHHHhcCCC
Confidence            99999999999986432133  334442  122211       223332211       00  000          0011


Q ss_pred             CcEEEEEEe--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCCh-hh-hcCCCcHHHHHHHHhcCCCc
Q 014997          348 PKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDK-AK-LQQASSVEEALEIARAALPV  410 (414)
Q Consensus       348 ~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~  410 (414)
                      .-+.++.++  +++|+|+++++.++.++... ..+|+.+.++++ .. +..+|++.|.+.++++.+..
T Consensus       389 ~g~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~~~~~~~~~  456 (461)
T TIGR01350       389 DGFVKIIADKKTGEILGAHIIGPHATELISEAVLAMELELTVEELAKTIHPHPTLSEAIKEAALAALG  456 (461)
T ss_pred             ceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCCHHHHHHHHHHHhcc
Confidence            225666664  58999999877777766544 456799988887 22 67899999999999877544

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=3.2e-32  Score=274.90  Aligned_cols=324  Identities=20%  Similarity=0.330  Sum_probs=232.7

Q ss_pred             HHHcCCeEEcCCcEEEEeC--CCCEEEeC--CCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhc
Q 014997           56 YKEKGIEMIYQDPVTSIDI--EKQTLITN--SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE  131 (414)
Q Consensus        56 ~~~~~i~~~~~~~V~~id~--~~~~V~~~--~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~  131 (414)
                      ++..+|+++.+ ++..++.  +.++|.+.  ++++++||+||||||++|+.+|.+ +  ..+...+. ..+   +.....
T Consensus       110 ~~~~~v~~~~g-~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p~~~p~~-~--~~~~~~~~-~~~---~~~~~~  181 (475)
T PRK06327        110 FKKNKITVLKG-RGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPRHLPGV-P--FDNKIILD-NTG---ALNFTE  181 (475)
T ss_pred             HHhCCCEEEEE-EEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCCCCCCCC-C--CCCceEEC-cHH---Hhcccc
Confidence            45579999986 6666663  34677664  346799999999999998644432 1  22222221 122   222223


Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEE
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  211 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~  211 (414)
                      .+++++|||+|++|+|+|..|+++|.+||++++.+++++ .+++++...+.+.++++||++++++.|++++.++++ + .
T Consensus       182 ~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-~~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~-v-~  258 (475)
T PRK06327        182 VPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA-AADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKG-V-S  258 (475)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC-cCCHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCE-E-E
Confidence            578999999999999999999999999999999999887 478899999999999999999999999999865332 2 3


Q ss_pred             EEeCC--C--cEEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccc
Q 014997          212 VKLED--G--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVE  284 (414)
Q Consensus       212 v~~~~--g--~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~  284 (414)
                      +.+.+  |  +++++|.+++++|.+|++++  ++++++..+ +|+|.||++++|+.|+|||+|||+..+.          
T Consensus       259 v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~Ts~~~VyA~GD~~~~~~----------  328 (475)
T PRK06327        259 VAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCRTNVPNVYAIGDVVRGPM----------  328 (475)
T ss_pred             EEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCCCccCCCCEEEEEeccCCcc----------
Confidence            44433  3  47999999999999999884  467787764 5789999999999999999999987432          


Q ss_pred             cHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeeccCCCCCCcceeeeEeecCCCc-------EEE-------------E
Q 014997          285 HVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TIE-------------I  343 (414)
Q Consensus       285 ~~~~A~~~a~~aa~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~~~-------------~  343 (414)
                      ....|..||..+|.||++... ..+..+|+..   |..+      .+..+|....+       ...             .
T Consensus       329 ~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~~~---~~~p------e~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~  399 (475)
T PRK06327        329 LAHKAEEEGVAVAERIAGQKGHIDYNTIPWVI---YTSP------EIAWVGKTEQQLKAEGVEYKAGKFPFMANGRALAM  399 (475)
T ss_pred             hHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEE---eCCc------ceEEEeCCHHHHHHcCCCEEEEEEcccccchhhhc
Confidence            455699999999999986432 2344556532   3221      13334433211       000             0


Q ss_pred             cCCCCcEEEEEEe--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCCh-hh-hcCCCcHHHHHHHHhcCCCc
Q 014997          344 GNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDK-AK-LQQASSVEEALEIARAALPV  410 (414)
Q Consensus       344 ~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~  410 (414)
                      +. ..-|.++.++  +++|+|+++++.++.++... .-+|+.+.+++. .. +..||++.|.+++|+..+..
T Consensus       400 ~~-~~g~~klv~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~  470 (475)
T PRK06327        400 GE-PDGFVKIIADAKTDEILGVHVIGPNASELIAEAVVAMEFKASSEDIARICHAHPTLSEVWHEAALAVDK  470 (475)
T ss_pred             CC-CCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCCcCCCChHHHHHHHHHHhcc
Confidence            11 1236667664  69999999877777766544 456799998887 23 57899999999999866543

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=4.5e-32  Score=273.40  Aligned_cols=319  Identities=23%  Similarity=0.324  Sum_probs=228.0

Q ss_pred             HHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCC---CCCEEEecCHHHHHHHHHhhcC
Q 014997           56 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISSLEK  132 (414)
Q Consensus        56 ~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~---~~gv~~~~~~~~~~~~~~~~~~  132 (414)
                      ++..+++++.+ ++..++.  +.+.+ +++++.||+||||||++   .|.++|..   ...+++   ..+...   ....
T Consensus       102 ~~~~~v~~~~g-~~~~~~~--~~v~v-~~~~~~~d~lIiATGs~---~p~ipg~~~~~~~~~~~---~~~~~~---~~~~  168 (460)
T PRK06292        102 EKKPKIDKIKG-TARFVDP--NTVEV-NGERIEAKNIVIATGSR---VPPIPGVWLILGDRLLT---SDDAFE---LDKL  168 (460)
T ss_pred             HhhCCCEEEEE-EEEEccC--CEEEE-CcEEEEeCEEEEeCCCC---CCCCCCCcccCCCcEEC---chHHhC---cccc
Confidence            34567888765 4554543  45555 67789999999999998   12334431   223332   222222   2235


Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEE
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV  212 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v  212 (414)
                      +++++|||+|++|+|+|..|+++|.+|+++++.+++++ .+++++...+.+.++++ |++++++.+++++.+++..+ .+
T Consensus       169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-~~d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v-~~  245 (460)
T PRK06292        169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP-LEDPEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKV-EE  245 (460)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc-chhHHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceE-EE
Confidence            78999999999999999999999999999999999887 48899999999999999 99999999999975433122 23


Q ss_pred             EeCCC--cEEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHH
Q 014997          213 KLEDG--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVD  287 (414)
Q Consensus       213 ~~~~g--~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~  287 (414)
                      .+.++  +++++|.+++++|.+|+++.  ++++++..+ +|+|.||+++||+.|+|||+|||+..+.          .+.
T Consensus       246 ~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~ts~~~IyA~GD~~~~~~----------~~~  315 (460)
T PRK06292        246 LEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVPGIYAAGDVNGKPP----------LLH  315 (460)
T ss_pred             EEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCcccCCCCEEEEEecCCCcc----------chh
Confidence            23333  57999999999999999984  577888764 5779999999999999999999987432          345


Q ss_pred             HHHHHHHHHHHHHhcCCCC--CCCCCCceeeeccCCCCCCcceeeeEeecCCCc-------E--EE-----------EcC
Q 014997          288 HARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T--IE-----------IGN  345 (414)
Q Consensus       288 ~A~~~a~~aa~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~--~~-----------~~~  345 (414)
                      .|..||+.+|.||++....  .+..+|+   ..|..+      .+..+|....+       .  ..           .+.
T Consensus       316 ~A~~qg~~aa~~i~~~~~~~~~~~~~p~---~~~~~~------~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~  386 (460)
T PRK06292        316 EAADEGRIAAENAAGDVAGGVRYHPIPS---VVFTDP------QIASVGLTEEELKAAGIDYVVGEVPFEAQGRARVMGK  386 (460)
T ss_pred             HHHHHHHHHHHHhcCCCCCCcCCCCCCe---EEECCC------ccEEeECCHHHHHhcCCCeEEEEEecccchHHHhcCC
Confidence            6999999999999863222  2344554   233221      13344443211       0  00           011


Q ss_pred             CCCcEEEEEEe--CCEEEEEEeecCChHHhhH-HHHHHhCCCCCCh-hh-hcCCCcHHHHHHHHhcCCCc
Q 014997          346 FDPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK-AK-LQQASSVEEALEIARAALPV  410 (414)
Q Consensus       346 ~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~-~~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~  410 (414)
                       ..-+.++.++  +++|+|+++++.++.++.. +..+|+.+.+++. .. ...||++.|++.++++.+..
T Consensus       387 -~~g~~klv~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~  455 (460)
T PRK06292        387 -NDGFVKVYADKKTGRLLGAHIIGPDAEHLIHLLAWAMQQGLTVEDLLRMPFYHPTLSEGLRTALRDLFS  455 (460)
T ss_pred             -CCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHHHHHHHHHHHHhh
Confidence             1225666664  5899999987777766654 4556799998887 33 67999999999999887654

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=100.00  E-value=6.1e-32  Score=270.62  Aligned_cols=319  Identities=18%  Similarity=0.221  Sum_probs=227.1

Q ss_pred             hHHHHcCCeEEcCCcEEEEeCCCCEEEeCC---CcEEecCeEEEccCCCCCCCCCCCCC-CCCCEEEecCHHHHHHHHHh
Q 014997           54 EWYKEKGIEMIYQDPVTSIDIEKQTLITNS---GKLLKYGSLIVATGCTASRFPEKIGG-YLPGVHYIRDVADADALISS  129 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~~id~~~~~V~~~~---g~~~~yd~LviAtG~~~~~~~~~~g~-~~~gv~~~~~~~~~~~~~~~  129 (414)
                      +.+.+.+|+++.+ ++..  .+.++|.+.+   ..++.||+||||||++|+. |.++|. +.+++++.      ..+...
T Consensus        84 ~~~~~~gV~~~~g-~~~~--~~~~~v~v~~~~~~~~~~~d~vViATGs~~~~-p~i~G~~~~~~v~~~------~~~~~~  153 (438)
T PRK07251         84 AMLAGSGVDLYDA-EAHF--VSNKVIEVQAGDEKIELTAETIVINTGAVSNV-LPIPGLADSKHVYDS------TGIQSL  153 (438)
T ss_pred             HHHHhCCCEEEEE-EEEE--ccCCEEEEeeCCCcEEEEcCEEEEeCCCCCCC-CCCCCcCCCCcEEch------HHHhcc
Confidence            4567789999986 4443  3456666543   2469999999999999864 455664 23444432      222222


Q ss_pred             hcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcE
Q 014997          130 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV  209 (414)
Q Consensus       130 ~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~  209 (414)
                      ...+++++|||+|++|+|+|..|++.|.+|+++++.++++++ .++++...+.+.+++.||++++++++++++.+ ++.+
T Consensus       154 ~~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~-~~~v  231 (438)
T PRK07251        154 ETLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR-EEPSVAALAKQYMEEDGITFLLNAHTTEVKND-GDQV  231 (438)
T ss_pred             hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC-CCHHHHHHHHHHHHHcCCEEEcCCEEEEEEec-CCEE
Confidence            345789999999999999999999999999999999999875 68889999999999999999999999999753 2322


Q ss_pred             EEEEeCCCcEEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccH
Q 014997          210 AAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHV  286 (414)
Q Consensus       210 ~~v~~~~g~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~  286 (414)
                       .+. .+|+++++|.+|+|+|.+|+.+.  +++.++..+ +|+|.||+++||+.|||||+|||+..+.          ..
T Consensus       232 -~v~-~~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~t~~~~IyaiGD~~~~~~----------~~  299 (438)
T PRK07251        232 -LVV-TEDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQTSVPGVFAVGDVNGGPQ----------FT  299 (438)
T ss_pred             -EEE-ECCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCcc----------cH
Confidence             233 45678999999999999999875  455676653 5789999999999999999999986432          22


Q ss_pred             HHHHHHHHHHHHHHhcCCC---CCCCCCCceeeeccCCCCCCcceeeeEeecCCCc-------EE-------------EE
Q 014997          287 DHARQSAQHCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TI-------------EI  343 (414)
Q Consensus       287 ~~A~~~a~~aa~~i~~~~~---~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~~-------------~~  343 (414)
                      ..|..+|+.++.++++...   ..+..+|+.  ..++..       +..+|....+       ..             ..
T Consensus       300 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~p~-------ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~  370 (438)
T PRK07251        300 YISLDDFRIVFGYLTGDGSYTLEDRGNVPTT--MFITPP-------LSQVGLTEKEAKEAGLPYAVKELLVAAMPRAHVN  370 (438)
T ss_pred             hHHHHHHHHHHHHHcCCCCccccccCCCCEE--EECCCc-------eEeeeCCHHHHHhcCCCeEEEEEECCcchhhhhc
Confidence            3477889999998886432   122345543  222221       3334432210       00             00


Q ss_pred             cCCCCcEEEEEEe--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCChh-h-hcCCCcHHHHHHHHhc
Q 014997          344 GNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDKA-K-LQQASSVEEALEIARA  406 (414)
Q Consensus       344 ~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~~-~-~~~~~~~~~~~~~~~~  406 (414)
                      ++. .-+.++.++  +++|+|+++++.++.++... .-+|+.+.+++.- . +..||++.|.+.++.+
T Consensus       371 ~~~-~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~  437 (438)
T PRK07251        371 NDL-RGAFKVVVNTETKEILGATLFGEGSQEIINLITMAMDNKIPYTYFKKQIFTHPTMAENLNDLFN  437 (438)
T ss_pred             CCC-cEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHHHHHHHhc
Confidence            110 125666664  58999999877777776554 4467888888873 2 6799999999988754

>PTZ00052 thioredoxin reductase; Provisional

Probab=100.00  E-value=1.3e-31  Score=271.18  Aligned_cols=315  Identities=19%  Similarity=0.219  Sum_probs=220.7

Q ss_pred             cCCeEEcCCcEEEEeCCCCEEEeCC---CcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCCe
Q 014997           59 KGIEMIYQDPVTSIDIEKQTLITNS---GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKK  135 (414)
Q Consensus        59 ~~i~~~~~~~V~~id~~~~~V~~~~---g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~  135 (414)
                      .+|+++.+ ++..  .+.++|.+.+   ++.+.||+||||||++|+.++.++|...    ...+..+.   ......+++
T Consensus       115 ~~v~~i~g-~a~~--~~~~~v~v~~~~~~~~i~~d~lIIATGs~p~~p~~i~G~~~----~~~~~~~~---~~~~~~~~~  184 (499)
T PTZ00052        115 SKVEYING-LAKL--KDEHTVSYGDNSQEETITAKYILIATGGRPSIPEDVPGAKE----YSITSDDI---FSLSKDPGK  184 (499)
T ss_pred             cCcEEEEE-EEEE--ccCCEEEEeeCCCceEEECCEEEEecCCCCCCCCCCCCccc----eeecHHHH---hhhhcCCCe
Confidence            57777765 4443  3445666532   3579999999999999864333444321    11222332   222235689


Q ss_pred             EEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeC
Q 014997          136 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE  215 (414)
Q Consensus       136 vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~  215 (414)
                      ++|||+|++|+|+|..|+++|.+||++++. .+++ .+++++++.+.+.|++.||++++++.+++++..+ +. ..+.+.
T Consensus       185 vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l~-~~d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~-~~-~~v~~~  260 (499)
T PTZ00052        185 TLIVGASYIGLETAGFLNELGFDVTVAVRS-IPLR-GFDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMD-DK-IKVLFS  260 (499)
T ss_pred             EEEECCCHHHHHHHHHHHHcCCcEEEEEcC-cccc-cCCHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcC-Ce-EEEEEC
Confidence            999999999999999999999999999874 6665 5899999999999999999999999999997543 22 356778


Q ss_pred             CCcEEecCEEEEccCCcCCChhh--hhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHH
Q 014997          216 DGSTIDADTIVIGIGAKPTVSPF--ERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQS  292 (414)
Q Consensus       216 ~g~~i~~D~vi~a~G~~p~~~~l--~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~  292 (414)
                      +|+++++|.|++++|.+||++++  ++++++.+ +|++.+++. +|+.|+|||+|||+....         ..+..|..|
T Consensus       261 ~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~-~Ts~p~IyAiGDv~~~~~---------~l~~~A~~~  330 (499)
T PTZ00052        261 DGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND-CTNIPNIFAVGDVVEGRP---------ELTPVAIKA  330 (499)
T ss_pred             CCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC-cCCCCCEEEEEEecCCCc---------ccHHHHHHH
Confidence            88899999999999999999875  57788765 466777777 999999999999986221         156679999


Q ss_pred             HHHHHHHHhcCCCC--CCCCCCceeeeccCCCCCCcceeeeEeecCCCc---------E-EE-----------------E
Q 014997          293 AQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE---------T-IE-----------------I  343 (414)
Q Consensus       293 a~~aa~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~---------~-~~-----------------~  343 (414)
                      |+.+|.||++....  .+..+|+.   .|..+-      +..+|....+         . +.                 .
T Consensus       331 g~~aa~ni~g~~~~~~~~~~~p~~---ift~p~------ia~vGlte~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (499)
T PTZ00052        331 GILLARRLFKQSNEFIDYTFIPTT---IFTPIE------YGACGYSSEAAIAKYGEDDIEEYLQEFNTLEIAAVHREKHE  401 (499)
T ss_pred             HHHHHHHHhCCCCCcCccccCCeE---EecCCc------ceeecCCHHHHHHhcCCCCEEEEEeecccchhhcccccccc
Confidence            99999999964322  23445553   343221      2223321100         0 00                 0


Q ss_pred             cC---------CCCcEEEEEEe---CCEEEEEEeecCChHHhhHHHH-HHhCCCCCCh-hh-hcCCCcHHHHHHHHhc
Q 014997          344 GN---------FDPKIATFWID---SGKLKGVLVESGSPEEFQLLPT-LARSQPFVDK-AK-LQQASSVEEALEIARA  406 (414)
Q Consensus       344 ~~---------~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~-l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~  406 (414)
                      +.         ...-|.++.++   +++|+|+++++.++.++...-. +|+.+.+++. .. +..||+++|++..+.-
T Consensus       402 ~~~~~~~~~~~~~~g~~Kli~~~~~~~~IlG~~ivg~~A~elI~~~~~ai~~~~t~~~l~~~~~~hPt~sE~~~~~~~  479 (499)
T PTZ00052        402 RARKDEYDFDVSSNCLAKLVCVKSEDNKVVGFHFVGPNAGEITQGFSLALKLGAKKSDFDSMIGIHPTDAEVFMNLSV  479 (499)
T ss_pred             ccccccccccccCCceEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCCCchhhEEEEe
Confidence            00         01225666553   4999999997778877765544 5788888877 33 6799999998876543

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=100.00  E-value=2.1e-31  Score=264.56  Aligned_cols=302  Identities=27%  Similarity=0.337  Sum_probs=248.9

Q ss_pred             CCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCCCEEEe
Q 014997            2 ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLIT   81 (414)
Q Consensus         2 ~~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~   81 (414)
                      ++.+|+++..+++.+|.+++++..+..+ .....++           ..... +..+.+++++.+++|+.+|++.+.|.+
T Consensus        22 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----------~~~~~-~~~~~~i~~~~~~~v~~id~~~~~v~~   88 (415)
T COG0446          22 LAAEITLIGREPKYSYYRCPLSLYVGGG-IASLEDL-----------RYPPR-FNRATGIDVRTGTEVTSIDPENKVVLL   88 (415)
T ss_pred             CCCCEEEEeCCCCCCCCCCccchHHhcc-cCCHHHh-----------cccch-hHHhhCCEEeeCCEEEEecCCCCEEEE
Confidence            6789999999999999999999844333 3333333           12222 335779999999999999999999999


Q ss_pred             CCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEE
Q 014997           82 NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTI  161 (414)
Q Consensus        82 ~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtl  161 (414)
                      .+| ++.||+|++|||+++...+   +....++++++...+...+.......++++|+|+|++|+|+|..++++|++|++
T Consensus        89 ~~g-~~~yd~LvlatGa~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~gle~A~~~~~~G~~v~l  164 (415)
T COG0446          89 DDG-EIEYDYLVLATGARPRPPP---ISDWEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTL  164 (415)
T ss_pred             CCC-cccccEEEEcCCCcccCCC---ccccCceEEECCHHHHHHHHHHHhccCeEEEECCcHHHHHHHHHHHHcCCeEEE
Confidence            999 7999999999999987544   555788999999999988877666678999999999999999999999999999


Q ss_pred             EeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEE-EEeCCCcEEecCEEEEccCCcCCChhhhh
Q 014997          162 IFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA-VKLEDGSTIDADTIVIGIGAKPTVSPFER  240 (414)
Q Consensus       162 v~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~-v~~~~g~~i~~D~vi~a~G~~p~~~~l~~  240 (414)
                      ++..++++++.+.+++.+.+.+.++++||+++++..+.+++...+..... +...++..+++|++++++|.+||..+..+
T Consensus       165 ~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~~~l~~~  244 (415)
T COG0446         165 IEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPNVVLAND  244 (415)
T ss_pred             EEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccccHHHHhh
Confidence            99999998853328899999999999999999999999998643322211 57788889999999999999999777776


Q ss_pred             cC--CcccCCCEEEcCCCCCC-CCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCCCceeee
Q 014997          241 VG--LNSSVGGIQVDGQFRTR-MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSR  317 (414)
Q Consensus       241 ~g--l~~~~g~i~vd~~~~t~-~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~~~~~~~~~p~~~~~  317 (414)
                      .+  +...+|+|.||++++|+ .++|||+|||+..+....+......+|+.|..+++.++.++.+. ......+++.|.+
T Consensus       245 ~~~~~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~~-~~~~~~~~~~~~~  323 (415)
T COG0446         245 ALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRIAAENIAGA-LRIPGLLGTVISD  323 (415)
T ss_pred             CccceeccCCCEEEccccccCCCCCEEeccceEeeecccCCceeeeechhhHhhhhHHHHHHhccc-cccccccCceEEE
Confidence            65  44556789999999997 99999999999987665444555778999999999999999865 3333567888888


Q ss_pred             ccCC
Q 014997          318 VFEY  321 (414)
Q Consensus       318 ~~~~  321 (414)
                      ++++
T Consensus       324 ~~~~  327 (415)
T COG0446         324 VGDL  327 (415)
T ss_pred             EcCe
Confidence            8875

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=99.98  E-value=1.9e-30  Score=239.26  Aligned_cols=328  Identities=21%  Similarity=0.393  Sum_probs=241.3

Q ss_pred             hHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCc--EEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhc
Q 014997           54 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE  131 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~--~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~  131 (414)
                      ..+++++|++..| .-.-++|..-++.-.||+  .+.++++||||||.-.++   ||..+++-.... -..+..+   -.
T Consensus       138 ~lfkknkV~~~kG-~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV~~~---PGI~IDekkIVS-StgALsL---~~  209 (506)
T KOG1335|consen  138 NLFKKNKVTYVKG-FGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEVTPF---PGITIDEKKIVS-STGALSL---KE  209 (506)
T ss_pred             HHhhhcCeEEEee-eEeecCCceEEEeccCCCceEEeeeeEEEEeCCccCCC---CCeEecCceEEe-cCCccch---hh
Confidence            4567788888877 344466666666666664  689999999999964333   343333211111 1112221   23


Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEE
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  211 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~  211 (414)
                      -+++++|||+|.+|+|++....++|.+||+++..+.+.+. +|.+++..+++.|.++|++|+++++|...+.+.+|.+ .
T Consensus       210 vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~-mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v-~  287 (506)
T KOG1335|consen  210 VPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV-MDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPV-E  287 (506)
T ss_pred             CcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc-cCHHHHHHHHHHHHhcCceeEeccEEEEeeccCCCce-E
Confidence            5799999999999999999999999999999999999985 9999999999999999999999999999998878754 3


Q ss_pred             EEeCC---C--cEEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCccccc
Q 014997          212 VKLED---G--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARV  283 (414)
Q Consensus       212 v~~~~---g--~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~  283 (414)
                      +++.+   +  ++++||.+++++|++|-+.-  +++.|+..| +++|.||..++|.+|+||++|||...|..        
T Consensus       288 i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~t~vP~i~~IGDv~~gpML--------  359 (506)
T KOG1335|consen  288 IEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQTKVPHIYAIGDVTLGPML--------  359 (506)
T ss_pred             EEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceeccccccccCCceEEecccCCcchh--------
Confidence            44422   2  47999999999999998764  567787765 68899999999999999999999987652        


Q ss_pred             ccHHHHHHHHHHHHHHHhcCC-CCCCCCCCceeeeccCCCCCCcceeeeEeecCCCcE------EEEcCC----------
Q 014997          284 EHVDHARQSAQHCIKALLSAQ-THTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGET------IEIGNF----------  346 (414)
Q Consensus       284 ~~~~~A~~~a~~aa~~i~~~~-~~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~~------~~~~~~----------  346 (414)
                        ..-|..+|..+...|.++. ...|.-+|-   ..|+++-      +.++|..+.++      +..|.+          
T Consensus       360 --AhkAeeegI~~VE~i~g~~~hv~ynciP~---v~ythPE------vawVG~TEeqlkeegi~y~vgkfpF~aNsRakt  428 (506)
T KOG1335|consen  360 --AHKAEEEGIAAVEGIAGGHGHVDYNCIPS---VVYTHPE------VAWVGKTEEQLKEEGIKYKVGKFPFSANSRAKT  428 (506)
T ss_pred             --hhhhhhhchhheeeecccCcccccCCCCc---eeecccc------eeeeccchhhHHhcCcceEeeeccccccchhhc
Confidence              2347888988888888754 345666663   4555542      33455543311      112221          


Q ss_pred             ---CCcEEEEEEe--CCEEEEEEeecCChHHhhHHHH-HHhCCCCCCh-hh-hcCCCcHHHHHHHHhcCCCc
Q 014997          347 ---DPKIATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVDK-AK-LQQASSVEEALEIARAALPV  410 (414)
Q Consensus       347 ---~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~-l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~  410 (414)
                         ...|.+...+  ++||+|++++.+++.++..-.. .+..+...++ +. ...||+++|++++|..+++.
T Consensus       429 n~d~eg~vKvl~d~~tdkiLGvHiigp~AgEli~EA~lAieyGasaeDvarvchaHPTlSEa~kEa~~aA~~  500 (506)
T KOG1335|consen  429 NNDTEGFVKVLADKETDKILGVHIIGPNAGELIHEASLAIEYGASAEDVARVCHAHPTLSEAFKEANMAAYD  500 (506)
T ss_pred             cCCccceeEEEecCCCCcEEEEEEecCCHHHHHHHHHHHHHhCccHHHHhhccCCCCcHHHHHHHHHHHhhc
Confidence               1235565554  7999999998888888765554 4577777777 33 58999999999999988765

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=99.96  E-value=7.8e-29  Score=248.13  Aligned_cols=228  Identities=24%  Similarity=0.303  Sum_probs=173.9

Q ss_pred             CHhHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCC-CCCCCCCCCCCCCCCEEEecCHHHHHHHHH--
Q 014997           52 TPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGC-TASRFPEKIGGYLPGVHYIRDVADADALIS--  128 (414)
Q Consensus        52 ~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~-~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~--  128 (414)
                      ..+++++.||++++++.+      .+.|.+++.. ..||+||||||+ .|+ .+.++|.+.+++++..++.+...+..  
T Consensus       189 ~~~~l~~~gv~~~~~~~v------~~~v~~~~~~-~~yd~viiAtGa~~p~-~~~ipG~~~~gv~~~~~~l~~~~~~~~~  260 (449)
T TIGR01316       189 EIKTLKKLGVTFRMNFLV------GKTATLEELF-SQYDAVFIGTGAGLPK-LMNIPGEELCGVYSANDFLTRANLMKAY  260 (449)
T ss_pred             HHHHHHhCCcEEEeCCcc------CCcCCHHHHH-hhCCEEEEeCCCCCCC-cCCCCCCCCCCcEEHHHHHHHHhhcccc
Confidence            456778899999998643      3445555443 579999999998 565 45567877888887665543332221  


Q ss_pred             -------hhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEE
Q 014997          129 -------SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNL  201 (414)
Q Consensus       129 -------~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i  201 (414)
                             ....+++|+|||+|++|+|+|..|.++|.+||++.+.++..   ++.  .....+.+++.||++++++.+.++
T Consensus       261 ~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~---~~~--~~~~~~~l~~~GV~~~~~~~~~~i  335 (449)
T TIGR01316       261 EFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTRED---MTA--RVEEIAHAEEEGVKFHFLCQPVEI  335 (449)
T ss_pred             cccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCccc---CCC--CHHHHHHHHhCCCEEEeccCcEEE
Confidence                   12357999999999999999999999999999999876421   111  122335678899999999999999


Q ss_pred             EecCCCcEEEEEeC---------CC-----------cEEecCEEEEccCCcCCChhhhhcCCccc-CCCEEEcCCCCCCC
Q 014997          202 EAGSDGRVAAVKLE---------DG-----------STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRM  260 (414)
Q Consensus       202 ~~~~~~~~~~v~~~---------~g-----------~~i~~D~vi~a~G~~p~~~~l~~~gl~~~-~g~i~vd~~~~t~~  260 (414)
                      ..++++++..|.+.         +|           +++++|.||+++|..|+..++++.++..+ +|+|.||++++|+.
T Consensus       336 ~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~gl~~~~~G~i~vd~~~~Ts~  415 (449)
T TIGR01316       336 IGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRLKTSERGTIVVDEDQRTSI  415 (449)
T ss_pred             EEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchhhhccCcccCCCCeEEeCCCCccCC
Confidence            76556666555542         22           26999999999999999988888888765 57899999999999


Q ss_pred             CcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997          261 PGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       261 ~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                      |+|||+|||+..+.          .+..|+.+|+.||.+|..
T Consensus       416 ~~VfA~GD~~~g~~----------~v~~Ai~~G~~AA~~I~~  447 (449)
T TIGR01316       416 PGVFAGGDIILGAA----------TVIRAMGQGKRAAKSINE  447 (449)
T ss_pred             CCEEEecCCCCCcH----------HHHHHHHHHHHHHHHHHh
Confidence            99999999986432          566799999999999863

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=99.96  E-value=6.9e-28  Score=229.24  Aligned_cols=227  Identities=24%  Similarity=0.350  Sum_probs=174.6

Q ss_pred             CCCCHhHHHHcCCeEEcCCcEEEEeCCCC--EEEeCCCcEEecCeEEEccCCCCCCCCCCCCCC---CCCEEEecCHHHH
Q 014997           49 ERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADA  123 (414)
Q Consensus        49 ~~~~~~~~~~~~i~~~~~~~V~~id~~~~--~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~---~~gv~~~~~~~~~  123 (414)
                      .....++++++++++++ ++|+.++++++  .|.+.+++++.||+||+|||+++.. +.++|.+   ..++++.....  
T Consensus        60 ~~~l~~~~~~~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~-~~i~g~~~~~~~~~~~~~~~~--  135 (300)
T TIGR01292        60 MEKMKEQAVKFGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARK-LGIPGEDEFLGRGVSYCATCD--  135 (300)
T ss_pred             HHHHHHHHHHcCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCccc-CCCCChhhcCCccEEEeeecC--
Confidence            34456678889999998 79999998765  6777778889999999999998763 4455532   12344332211  


Q ss_pred             HHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhC-CcEEEcCceEEEEE
Q 014997          124 DALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN-GVKFVKGASIKNLE  202 (414)
Q Consensus       124 ~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~-gv~i~~~~~v~~i~  202 (414)
                          .....+++++|||+|.+|+|+|..|++.+.+|+++++.+.+..       ...+.+.+++. ||++++++.++++.
T Consensus       136 ----~~~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~-------~~~~~~~l~~~~gv~~~~~~~v~~i~  204 (300)
T TIGR01292       136 ----GPFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRA-------EKILLDRLRKNPNIEFLWNSTVKEIV  204 (300)
T ss_pred             ----hhhcCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCc-------CHHHHHHHHhCCCeEEEeccEEEEEE
Confidence                1234678999999999999999999999999999999875431       23445666777 99999999999997


Q ss_pred             ecCCCcEEEEEeC-----CCcEEecCEEEEccCCcCCChhhhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCcc
Q 014997          203 AGSDGRVAAVKLE-----DGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKM  276 (414)
Q Consensus       203 ~~~~~~~~~v~~~-----~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~  276 (414)
                      .+  +.+..+.+.     +++++++|.+++|+|++|+.++++.+ +..+ +|++.||++++|++|||||+|||+....  
T Consensus       205 ~~--~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~l~~~-~~~~~~g~i~v~~~~~t~~~~vya~GD~~~~~~--  279 (300)
T TIGR01292       205 GD--NKVEGVKIKNTVTGEEEELKVDGVFIAIGHEPNTELLKGL-LELDEGGYIVTDEGMRTSVPGVFAAGDVRDKGY--  279 (300)
T ss_pred             cc--CcEEEEEEEecCCCceEEEEccEEEEeeCCCCChHHHHHh-heecCCCcEEECCCCccCCCCEEEeecccCcch--
Confidence            53  344444442     23579999999999999998888776 5543 5789999999999999999999997421  


Q ss_pred             CCcccccccHHHHHHHHHHHHHHHhc
Q 014997          277 YDRTARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       277 ~~~~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                             ..+..|+.+|+.||.+|..
T Consensus       280 -------~~~~~A~~~g~~aa~~i~~  298 (300)
T TIGR01292       280 -------RQAVTAAGDGCIAALSAER  298 (300)
T ss_pred             -------hhhhhhhhhHHHHHHHHHh
Confidence                   2567799999999999863

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.96  E-value=7.4e-28  Score=219.54  Aligned_cols=287  Identities=24%  Similarity=0.354  Sum_probs=212.5

Q ss_pred             HHcCCeEEcCCcEEEEeCCCCEEEeCCCc--EEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCC
Q 014997           57 KEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK  134 (414)
Q Consensus        57 ~~~~i~~~~~~~V~~id~~~~~V~~~~g~--~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~  134 (414)
                      .+.+|+++.| +..-+++..-+|...+|+  .+++.+++||||++|. .|.+||..+     .   .+++.+.+....++
T Consensus       121 ~k~~V~~i~G-~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~-~PnIpG~E~-----g---idSDgff~Lee~Pk  190 (478)
T KOG0405|consen  121 AKAAVKLIEG-RARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPI-IPNIPGAEL-----G---IDSDGFFDLEEQPK  190 (478)
T ss_pred             cccceeEEee-eEEEcCCCceEEEecCCeeEEEecceEEEEeCCccC-CCCCCchhh-----c---cccccccchhhcCc
Confidence            3457888886 666677777788888885  3788999999999986 566555432     1   12333333345789


Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEe
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL  214 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~  214 (414)
                      +++|||+|++++|+|..++.+|.+++++.|.+.+|. .||+.++..+.+.++.+||++|.++.++++.+..++... +..
T Consensus       191 r~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR-~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~-~i~  268 (478)
T KOG0405|consen  191 RVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLR-GFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLEL-VIT  268 (478)
T ss_pred             eEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhc-chhHHHHHHHHHHhhhcceeecccccceeeeecCCCceE-EEE
Confidence            999999999999999999999999999999999996 699999999999999999999999999999887666554 344


Q ss_pred             CCCcEEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHH
Q 014997          215 EDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ  291 (414)
Q Consensus       215 ~~g~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~  291 (414)
                      ..|....+|.++||+|..||+.-  |++.|++.+ +|.|.||++.+|++|+||++||++.--          +.-..|..
T Consensus       269 ~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~Tnvp~I~avGDv~gk~----------~LTPVAia  338 (478)
T KOG0405|consen  269 SHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNTNVPSIWAVGDVTGKI----------NLTPVAIA  338 (478)
T ss_pred             eccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccCCCCceEEeccccCcE----------ecchHHHh
Confidence            55555669999999999999864  678898875 678999999999999999999998743          24456889


Q ss_pred             HHHHHHHHHhcCC---CCCCCCCCceeeeccCCCCCCcceeeeEeecCCCcEE----------E-----------EcCCC
Q 014997          292 SAQHCIKALLSAQ---THTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETI----------E-----------IGNFD  347 (414)
Q Consensus       292 ~a~~aa~~i~~~~---~~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~~~----------~-----------~~~~~  347 (414)
                      .|+..++.+.+..   ...|..+|-   .+|..+.      +-.+|..+.+.+          .           .+..+
T Consensus       339 agr~la~rlF~~~~~~kldY~nVp~---vVFshP~------igtVGLtE~EAiekyg~~~i~vy~s~F~pm~~a~~~~k~  409 (478)
T KOG0405|consen  339 AGRKLANRLFGGGKDTKLDYENVPC---VVFSHPP------IGTVGLTEEEAIEKYGKGDIKVYTSKFNPMKYAMSGRKE  409 (478)
T ss_pred             hhhhHHHHhhcCCCCCccccccCce---EEEecCC------cccccCCHHHHHHHhCccceEEEecCCchhHhHhhcCCc
Confidence            9999999998732   234666663   5555432      222333322110          0           11111


Q ss_pred             CcEEEEEE--eCCEEEEEEeecCChHHhh
Q 014997          348 PKIATFWI--DSGKLKGVLVESGSPEEFQ  374 (414)
Q Consensus       348 ~~~~~~~~--~~~~~~g~~~~~~~~~~~~  374 (414)
                      .-+.++..  ++++++|++++..++.++.
T Consensus       410 kt~mKlvc~~~~eKVvG~hm~G~~s~Eil  438 (478)
T KOG0405|consen  410 KTLMKLVCAGKSEKVVGVHMCGDDSAEIL  438 (478)
T ss_pred             ceEEEEEEecCCCcEEEEEEecCCcHHHH
Confidence            12334443  4799999999777666553

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=99.96  E-value=3.7e-28  Score=247.35  Aligned_cols=234  Identities=26%  Similarity=0.374  Sum_probs=176.6

Q ss_pred             cCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCC--CEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCC---CCCEEEec
Q 014997           44 VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIR  118 (414)
Q Consensus        44 ~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~--~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~---~~gv~~~~  118 (414)
                      .+.++..+..+++++++++++.+++|+.++.+.  ..|.+.+|+.+.||+||+|||++++. +.++|..   ..++++..
T Consensus       265 ~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~-~~ipG~~~~~~~~v~~~~  343 (515)
T TIGR03140       265 TGSQLAANLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRK-LGVPGEKEYIGKGVAYCP  343 (515)
T ss_pred             CHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcCC-CCCCCHHHcCCCeEEEee
Confidence            334444455677788899999999999998765  46777888889999999999999864 4455531   23454443


Q ss_pred             CHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHh-CCcEEEcCce
Q 014997          119 DVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ-NGVKFVKGAS  197 (414)
Q Consensus       119 ~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~-~gv~i~~~~~  197 (414)
                      ..+      .....+++|+|||||++|+|+|..|++.+.+||++++.+.+..       ...+.+.+++ .||++++++.
T Consensus       344 ~~~------~~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~-------~~~l~~~l~~~~gV~i~~~~~  410 (515)
T TIGR03140       344 HCD------GPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA-------DKVLQDKLKSLPNVDILTSAQ  410 (515)
T ss_pred             ccC------hhhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh-------hHHHHHHHhcCCCCEEEECCe
Confidence            221      1234689999999999999999999999999999998876532       2345666666 6999999999


Q ss_pred             EEEEEecCCCcEEEEEeCC---C--cEEecCEEEEccCCcCCChhhhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccc
Q 014997          198 IKNLEAGSDGRVAAVKLED---G--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAA  271 (414)
Q Consensus       198 v~~i~~~~~~~~~~v~~~~---g--~~i~~D~vi~a~G~~p~~~~l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~  271 (414)
                      ++++..+ ++.+..+.+.+   |  ++++||.|++++|.+|++++++.. +..+ +|+|.||+++||++|+|||+|||+.
T Consensus       411 v~~i~~~-~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l~~~-~~~~~~G~I~vd~~~~Ts~p~IyAaGDv~~  488 (515)
T TIGR03140       411 TTEIVGD-GDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDA-VELNRRGEIVIDERGRTSVPGIFAAGDVTT  488 (515)
T ss_pred             eEEEEcC-CCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchHHhhh-cccCCCCeEEECCCCCCCCCCEEEcccccC
Confidence            9999743 35555666643   2  469999999999999999998776 6654 5789999999999999999999998


Q ss_pred             cCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997          272 FPLKMYDRTARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       272 ~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                      .+..         .+..|+.+|..||.++..
T Consensus       489 ~~~~---------~~~~A~~~G~~Aa~~i~~  510 (515)
T TIGR03140       489 VPYK---------QIIIAMGEGAKAALSAFD  510 (515)
T ss_pred             Cccc---------eEEEEEccHHHHHHHHHH
Confidence            6542         112366677777766653

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK10262 thioredoxin reductase; Provisional

Probab=99.96  E-value=2e-27  Score=228.57  Aligned_cols=230  Identities=20%  Similarity=0.281  Sum_probs=168.6

Q ss_pred             CCCHhHHHHcCCeEEcCCcEEEEeCCCCEEEeC-CCcEEecCeEEEccCCCCCCCCCCCCCC---CCCEEEecCHHHHHH
Q 014997           50 RQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITN-SGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADA  125 (414)
Q Consensus        50 ~~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~-~g~~~~yd~LviAtG~~~~~~~~~~g~~---~~gv~~~~~~~~~~~  125 (414)
                      .+..++...++++++.+ +|+.|+...+.+++. +...+.||+||||||++++. |.++|.+   ..++++.....    
T Consensus        67 ~~~~~~~~~~~~~~~~~-~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~~~~~-~~i~g~~~~~~~~v~~~~~~~----  140 (321)
T PRK10262         67 ERMHEHATKFETEIIFD-HINKVDLQNRPFRLTGDSGEYTCDALIIATGASARY-LGLPSEEAFKGRGVSACATCD----  140 (321)
T ss_pred             HHHHHHHHHCCCEEEee-EEEEEEecCCeEEEEecCCEEEECEEEECCCCCCCC-CCCCCHHHcCCCcEEEeecCC----
Confidence            34456666778888875 788888876654332 23368999999999999864 4555532   23444433221    


Q ss_pred             HHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecC
Q 014997          126 LISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS  205 (414)
Q Consensus       126 ~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~  205 (414)
                        .....+++++|||+|.+|+|+|..|++++.+|+++++.+.+.   .++.+.+.+.+.+++.||++++++.++++..+ 
T Consensus       141 --~~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~---~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~-  214 (321)
T PRK10262        141 --GFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR---AEKILIKRLMDKVENGNIILHTNRTLEEVTGD-  214 (321)
T ss_pred             --HHHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC---CCHHHHHHHHhhccCCCeEEEeCCEEEEEEcC-
Confidence              123468999999999999999999999999999999987653   34567778888899999999999999999754 


Q ss_pred             CCcEEEEEeCCC------cEEecCEEEEccCCcCCChhhhhcCCcccCCCEEEcC-----CCCCCCCcEEEEccccccCC
Q 014997          206 DGRVAAVKLEDG------STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDG-----QFRTRMPGIFAIGDVAAFPL  274 (414)
Q Consensus       206 ~~~~~~v~~~~g------~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~g~i~vd~-----~~~t~~~~IyA~GD~a~~~~  274 (414)
                      ++.+..+++.++      +++++|.|++++|.+||..++.. ++..++|+|.||+     +++|++|+|||+|||+..+.
T Consensus       215 ~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~~-~l~~~~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~  293 (321)
T PRK10262        215 QMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEG-QLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIY  293 (321)
T ss_pred             CccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHhhc-cccccCCEEEECCCCcccccccCCCCEEECeeccCCCc
Confidence            333445555432      47999999999999999887654 5666668899997     68999999999999997543


Q ss_pred             ccCCcccccccHHHHHHHHHHHHHHHh
Q 014997          275 KMYDRTARVEHVDHARQSAQHCIKALL  301 (414)
Q Consensus       275 ~~~~~~~~~~~~~~A~~~a~~aa~~i~  301 (414)
                      .         .+..|+.+|..||..+.
T Consensus       294 ~---------~~~~A~~~g~~Aa~~~~  311 (321)
T PRK10262        294 R---------QAITSAGTGCMAALDAE  311 (321)
T ss_pred             c---------eEEEEehhHHHHHHHHH
Confidence            2         11125555666555544

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=99.95  E-value=1.2e-26  Score=244.83  Aligned_cols=242  Identities=23%  Similarity=0.320  Sum_probs=174.9

Q ss_pred             CCHhHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEec-CHHHHHHHHHh
Q 014997           51 QTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIR-DVADADALISS  129 (414)
Q Consensus        51 ~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~-~~~~~~~~~~~  129 (414)
                      +..+++++.||++++++.+ .++       +++.+...||+||||||+++...+.++|.+ +++++.. .+.+.......
T Consensus       594 ~die~l~~~GVe~~~gt~V-di~-------le~L~~~gYDaVILATGA~~~~~l~IpG~~-~gV~saldfL~~~k~~~~~  664 (1019)
T PRK09853        594 HDIEFVKAHGVKFEFGCSP-DLT-------VEQLKNEGYDYVVVAIGADKNGGLKLEGGN-QNVIKALPFLEEYKNKGTA  664 (1019)
T ss_pred             HHHHHHHHcCCEEEeCcee-EEE-------hhhheeccCCEEEECcCCCCCCCCCCCCcc-CCceehHHHHHHHhhhccc
Confidence            4457788899999998766 232       233445679999999999854334445543 4554322 12222122233


Q ss_pred             hcCCCeEEEECCChHHHHHHHHHHhC-C-CcEEEEeeCCc-ccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCC
Q 014997          130 LEKAKKVVVVGGGYIGMEVAAAAVGW-K-LDTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD  206 (414)
Q Consensus       130 ~~~~~~vvVvGgG~~g~e~A~~l~~~-g-~~Vtlv~~~~~-~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~  206 (414)
                      ...+++|+|||||++|+|+|..+.+. | .+|+++.|++. .++. .    ...+.+.+ +.||+++.+..+.++..  +
T Consensus       665 ~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA-~----~eEle~Al-eeGVe~~~~~~p~~I~~--d  736 (1019)
T PRK09853        665 LKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPA-W----REEYEEAL-EDGVEFKELLNPESFDA--D  736 (1019)
T ss_pred             ccCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccc-c----HHHHHHHH-HcCCEEEeCCceEEEEc--C
Confidence            45689999999999999999998887 4 48999998763 3331 2    23344433 57999999988888863  2


Q ss_pred             CcE----------------EEEEeCCCcEEecCEEEEccCCcCCChhhhhcCCccc-CCCEEEcCCCCCCCCcEEEEccc
Q 014997          207 GRV----------------AAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDV  269 (414)
Q Consensus       207 ~~~----------------~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~  269 (414)
                      +.+                ..+..+++.+++||.||+|+|.+|+.+++++.|+..+ +|+|.||++++|+.|+|||+|||
T Consensus       737 G~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntelle~~GL~ld~~G~I~VDetlqTs~pgVFAaGD~  816 (1019)
T PRK09853        737 GTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELLKANGIPLDKKGWPVVDANGETSLTNVYMIGDV  816 (1019)
T ss_pred             CcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhHHHhcCccccCCCCEEeCCCcccCCCCEEEEecc
Confidence            322                1223344568999999999999999999988888764 57899999999999999999999


Q ss_pred             cccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCCCceeeecc
Q 014997          270 AAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVF  319 (414)
Q Consensus       270 a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~~~~~~~~~p~~~~~~~  319 (414)
                      +..+.          .+..|+.+|+.||++|++.....+...|+||+..+
T Consensus       817 a~Gp~----------tvv~Ai~qGr~AA~nI~~~~~~~~~~~~~~~~~~~  856 (1019)
T PRK09853        817 QRGPS----------TIVAAIADARRAADAILSREGIRSHQNDKYWNNVE  856 (1019)
T ss_pred             ccCch----------HHHHHHHHHHHHHHHHhhhcCCCcccccccccccc
Confidence            86543          45679999999999999766667777888877654

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=99.95  E-value=3.6e-27  Score=221.10  Aligned_cols=267  Identities=22%  Similarity=0.332  Sum_probs=192.5

Q ss_pred             CcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH-HHHc--CCeEEcCCcEEEEeCCCCEEE
Q 014997            4 GRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW-YKEK--GIEMIYQDPVTSIDIEKQTLI   80 (414)
Q Consensus         4 g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~~-~~~~--~i~~~~~~~V~~id~~~~~V~   80 (414)
                      -.|++|+..+|+-|- |+|+- .-.|.-. ...+            ..+... .++.  ++.++. ++.+.||++++.|+
T Consensus        79 YdV~vVSPRnyFlFT-PLLpS-~~vGTve-~rSI------------vEPIr~i~r~k~~~~~y~e-Aec~~iDp~~k~V~  142 (491)
T KOG2495|consen   79 YDVTVVSPRNYFLFT-PLLPS-TTVGTVE-LRSI------------VEPIRAIARKKNGEVKYLE-AECTKIDPDNKKVH  142 (491)
T ss_pred             cceEEeccccceEEe-eccCC-cccccee-ehhh------------hhhHHHHhhccCCCceEEe-cccEeecccccEEE
Confidence            368999998888775 66653 3333111 0000            122222 2222  566766 68999999999887


Q ss_pred             eC----CC----cEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhh----cC-------------CCe
Q 014997           81 TN----SG----KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL----EK-------------AKK  135 (414)
Q Consensus        81 ~~----~g----~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~----~~-------------~~~  135 (414)
                      ++    ++    ..+.|||||+|+|+.+.. ..+||- .++.+.++..+|+++++..+    .+             --+
T Consensus       143 ~~s~t~~~~~~e~~i~YDyLViA~GA~~~T-FgipGV-~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh  220 (491)
T KOG2495|consen  143 CRSLTADSSDKEFVIGYDYLVIAVGAEPNT-FGIPGV-EENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLH  220 (491)
T ss_pred             EeeeccCCCcceeeecccEEEEeccCCCCC-CCCCch-hhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEE
Confidence            54    44    468999999999999864 344443 23445677888888775432    11             126


Q ss_pred             EEEECCChHHHHHHHHHHhC--------------CCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEE
Q 014997          136 VVVVGGGYIGMEVAAAAVGW--------------KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNL  201 (414)
Q Consensus       136 vvVvGgG~~g~e~A~~l~~~--------------g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i  201 (414)
                      +||||||++|+|+|.+|...              -.+||+++..+.+|+ +|+..+.++.++.+.+.||++.+++.|+.+
T Consensus       221 ~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~-mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V  299 (491)
T KOG2495|consen  221 FVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILN-MFDKRLVEYAENQFVRDGIDLDTGTMVKKV  299 (491)
T ss_pred             EEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHH-HHHHHHHHHHHHHhhhccceeecccEEEee
Confidence            99999999999999998643              367999999999997 799999999999999999999999999999


Q ss_pred             EecCCCcEEEEEeCCC--cEEecCEEEEccCCcCCChhhhhcCCcc---cCCCEEEcCCCCC-CCCcEEEEccccccCCc
Q 014997          202 EAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERVGLNS---SVGGIQVDGQFRT-RMPGIFAIGDVAAFPLK  275 (414)
Q Consensus       202 ~~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~~l~~~gl~~---~~g~i~vd~~~~t-~~~~IyA~GD~a~~~~~  275 (414)
                      +..   . ..+...+|  ++||+-+++|++|..|. ++.+.+.-..   ++.++.||++||. +.+||||+|||+..+..
T Consensus       300 ~~~---~-I~~~~~~g~~~~iPYG~lVWatG~~~r-p~~k~lm~~i~e~~rr~L~vDE~LrV~G~~nvfAiGDca~~~~~  374 (491)
T KOG2495|consen  300 TEK---T-IHAKTKDGEIEEIPYGLLVWATGNGPR-PVIKDLMKQIDEQGRRGLAVDEWLRVKGVKNVFAIGDCADQRGL  374 (491)
T ss_pred             cCc---E-EEEEcCCCceeeecceEEEecCCCCCc-hhhhhHhhcCCccCceeeeeeceeeccCcCceEEeccccccccC
Confidence            642   1 13344455  57999999999999886 4443332222   1348999999997 89999999999954332


Q ss_pred             cCCcccccccHHHHHHHHHHHHHHHh
Q 014997          276 MYDRTARVEHVDHARQSAQHCIKALL  301 (414)
Q Consensus       276 ~~~~~~~~~~~~~A~~~a~~aa~~i~  301 (414)
                             .++.+.|.+||.++|+++-
T Consensus       375 -------~~tAQVA~QqG~yLAk~fn  393 (491)
T KOG2495|consen  375 -------KPTAQVAEQQGAYLAKNFN  393 (491)
T ss_pred             -------ccHHHHHHHHHHHHHHHHH
Confidence                   1266779999999999874

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=99.95  E-value=6.4e-27  Score=238.51  Aligned_cols=241  Identities=21%  Similarity=0.305  Sum_probs=180.9

Q ss_pred             CCCCCccccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCC--CCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCC---
Q 014997           36 RLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE--KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---  110 (414)
Q Consensus        36 ~l~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~--~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~---  110 (414)
                      ++++++...|.++.....+++++++++++.+++|+.++..  ...|.+.+|+++.||+||+|||++++. +.++|..   
T Consensus       256 ~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~-~~ipG~~~~~  334 (517)
T PRK15317        256 NFISVPETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARWRN-MNVPGEDEYR  334 (517)
T ss_pred             ccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCC-CCCCCHHHhc
Confidence            3444444455555556677788899999999999999886  346778888889999999999998864 4455531   


Q ss_pred             CCCEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHh-CC
Q 014997          111 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ-NG  189 (414)
Q Consensus       111 ~~gv~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~-~g  189 (414)
                      ..++++....+      ....++++|+|||+|++|+|+|..|+..+.+|+++++.+.+..   +    ..+.+.+.+ .|
T Consensus       335 ~~~v~~~~~~~------~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~---~----~~l~~~l~~~~g  401 (517)
T PRK15317        335 NKGVAYCPHCD------GPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA---D----QVLQDKLRSLPN  401 (517)
T ss_pred             CceEEEeeccC------chhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc---c----HHHHHHHhcCCC
Confidence            23454432211      1224689999999999999999999999999999999876532   1    344555665 69


Q ss_pred             cEEEcCceEEEEEecCCCcEEEEEeC---CC--cEEecCEEEEccCCcCCChhhhhcCCccc-CCCEEEcCCCCCCCCcE
Q 014997          190 VKFVKGASIKNLEAGSDGRVAAVKLE---DG--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGI  263 (414)
Q Consensus       190 v~i~~~~~v~~i~~~~~~~~~~v~~~---~g--~~i~~D~vi~a~G~~p~~~~l~~~gl~~~-~g~i~vd~~~~t~~~~I  263 (414)
                      |++++++.+.++..+ ++.+..+.+.   +|  ++++||.+++++|.+|++++++.. +..+ +|+|.||+++||++|+|
T Consensus       402 I~i~~~~~v~~i~~~-~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l~~~-v~~~~~g~i~vd~~l~Ts~p~I  479 (517)
T PRK15317        402 VTIITNAQTTEVTGD-GDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWLKGT-VELNRRGEIIVDARGATSVPGV  479 (517)
T ss_pred             cEEEECcEEEEEEcC-CCcEEEEEEEECCCCcEEEEEcCEEEEeECCccCchHHhhh-eeeCCCCcEEECcCCCCCCCCE
Confidence            999999999999853 4566566654   33  369999999999999999998776 6553 57899999999999999


Q ss_pred             EEEccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 014997          264 FAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  301 (414)
Q Consensus       264 yA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~  301 (414)
                      ||+|||+..+..         .+..|+.+|..||.++.
T Consensus       480 yAaGDv~~~~~k---------~~~~A~~eG~~Aa~~~~  508 (517)
T PRK15317        480 FAAGDCTTVPYK---------QIIIAMGEGAKAALSAF  508 (517)
T ss_pred             EECccccCCCCC---------EEEEhhhhHHHHHHHHH
Confidence            999999986543         22336667777766654

>PRK12831 putative oxidoreductase; Provisional

Probab=99.95  E-value=2.2e-26  Score=230.98  Aligned_cols=230  Identities=22%  Similarity=0.287  Sum_probs=171.6

Q ss_pred             CCHhHHHHcCCeEEcCCcEEEEeCCCCEEEeCCC-cEEecCeEEEccCC-CCCCCCCCCCCCCCCEEEecCHHHHHHHHH
Q 014997           51 QTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG-KLLKYGSLIVATGC-TASRFPEKIGGYLPGVHYIRDVADADALIS  128 (414)
Q Consensus        51 ~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g-~~~~yd~LviAtG~-~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~  128 (414)
                      +..+++++.|+++++++.|      .+.+.+++. +.+.||+||||||+ .|+. +.++|.+.+++++..++.....+..
T Consensus       196 ~~~~~~~~~gv~i~~~~~v------~~~v~~~~~~~~~~~d~viiAtGa~~~~~-l~ipG~~~~gV~~~~~~l~~~~~~~  268 (464)
T PRK12831        196 KEIENIKKLGVKIETNVVV------GKTVTIDELLEEEGFDAVFIGSGAGLPKF-MGIPGENLNGVFSANEFLTRVNLMK  268 (464)
T ss_pred             HHHHHHHHcCCEEEcCCEE------CCcCCHHHHHhccCCCEEEEeCCCCCCCC-CCCCCcCCcCcEEHHHHHHHHHhcc
Confidence            3457788899999998754      233444443 34679999999998 5764 4568888889887765544332211


Q ss_pred             --------hhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEE
Q 014997          129 --------SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKN  200 (414)
Q Consensus       129 --------~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~  200 (414)
                              ....+++|+|||+|++|+|+|..|.++|.+||++.+....   .++... ..+ +.+++.||++++++.+.+
T Consensus       269 ~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~---~m~a~~-~e~-~~a~~eGV~i~~~~~~~~  343 (464)
T PRK12831        269 AYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEE---ELPARV-EEV-HHAKEEGVIFDLLTNPVE  343 (464)
T ss_pred             cccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcc---cCCCCH-HHH-HHHHHcCCEEEecccceE
Confidence                    1246799999999999999999999999999999986531   122222 122 335678999999999999


Q ss_pred             EEecCCCcEEEEEeC------------------CCc--EEecCEEEEccCCcCCChhhhh-cCCccc-CCCEEEcCC-CC
Q 014997          201 LEAGSDGRVAAVKLE------------------DGS--TIDADTIVIGIGAKPTVSPFER-VGLNSS-VGGIQVDGQ-FR  257 (414)
Q Consensus       201 i~~~~~~~~~~v~~~------------------~g~--~i~~D~vi~a~G~~p~~~~l~~-~gl~~~-~g~i~vd~~-~~  257 (414)
                      +..++++++..+++.                  +|+  +++||.||+++|..|+..++.+ .|+..+ +|+|.||++ ++
T Consensus       344 i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~  423 (464)
T PRK12831        344 ILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEETGL  423 (464)
T ss_pred             EEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCChhhhcccCCceECCCCcEEECCCCCc
Confidence            976556666555441                  222  6999999999999999888776 677764 578999997 99


Q ss_pred             CCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997          258 TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       258 t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                      ||.|+|||+|||+..+.          .+..|..+|+.||.+|..
T Consensus       424 Ts~pgVfAaGD~~~g~~----------~v~~Ai~~G~~AA~~I~~  458 (464)
T PRK12831        424 TSKEGVFAGGDAVTGAA----------TVILAMGAGKKAAKAIDE  458 (464)
T ss_pred             cCCCCEEEeCCCCCCch----------HHHHHHHHHHHHHHHHHH
Confidence            99999999999986432          456799999999998864

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.5e-26  Score=217.54  Aligned_cols=240  Identities=25%  Similarity=0.361  Sum_probs=191.9

Q ss_pred             CCCCCCCCcc-ccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCC--CEEEeCCCcEEecCeEEEccCCCCCCCCCCCCC
Q 014997           33 KPARLPGFHT-CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGG  109 (414)
Q Consensus        33 ~~~~l~~~~~-~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~--~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~  109 (414)
                      ..+++|+++. ++|.+++.+..++....++++.. ..|..++...  ..|++++|+ +.+++||||||..++.+ .+++.
T Consensus        47 ~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~-~~~~e  123 (305)
T COG0492          47 DVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARKL-GVPGE  123 (305)
T ss_pred             eecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccCC-CCCcc
Confidence            5788899998 89999999999999999999998 6899998875  688899888 99999999999988753 33332


Q ss_pred             C---CCCEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHH
Q 014997          110 Y---LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ  186 (414)
Q Consensus       110 ~---~~gv~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~  186 (414)
                      .   ..+++++-+   |+.    +.++++|+|||||.+++|-|..|.+.+.+||+++|++.+-.       ...+.+.++
T Consensus       124 ~e~~g~gv~yc~~---cdg----~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra-------~~~~~~~l~  189 (305)
T COG0492         124 EEFEGKGVSYCAT---CDG----FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA-------EEILVERLK  189 (305)
T ss_pred             hhhcCCceEEeee---cCc----cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc-------CHHHHHHHH
Confidence            1   247777643   222    35788999999999999999999999999999999986543       223445555


Q ss_pred             hC-CcEEEcCceEEEEEecCCCcEEEEEeCCC----cEEecCEEEEccCCcCCChhhhhcCCcccCCCEEEcCCCCCCCC
Q 014997          187 QN-GVKFVKGASIKNLEAGSDGRVAAVKLEDG----STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMP  261 (414)
Q Consensus       187 ~~-gv~i~~~~~v~~i~~~~~~~~~~v~~~~g----~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~g~i~vd~~~~t~~~  261 (414)
                      +. +|++++++.+.++..+  + +..+.+.+.    +.+++|-+++++|..|++++++..++..++|.|.||+.++||+|
T Consensus       190 ~~~~i~~~~~~~i~ei~G~--~-v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~~~~~~~~~~~g~I~v~~~~~Tsvp  266 (305)
T COG0492         190 KNVKIEVLTNTVVKEILGD--D-VEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGVLDENGYIVVDEEMETSVP  266 (305)
T ss_pred             hcCCeEEEeCCceeEEecC--c-cceEEEEecCCceEEEEeceEEEecCCCCchHHHhhccccCCCCcEEcCCCcccCCC
Confidence            55 8999999999999854  2 556666653    37999999999999999999998887555789999999999999


Q ss_pred             cEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 014997          262 GIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  301 (414)
Q Consensus       262 ~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~  301 (414)
                      +|||||||+..+.+         ++..|..+|..||.++.
T Consensus       267 GifAaGDv~~~~~r---------qi~ta~~~G~~Aa~~a~  297 (305)
T COG0492         267 GIFAAGDVADKNGR---------QIATAAGDGAIAALSAE  297 (305)
T ss_pred             CEEEeEeeccCccc---------EEeehhhhHHHHHHHHH
Confidence            99999999987653         23345666666666554

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=99.94  E-value=5.6e-25  Score=225.67  Aligned_cols=237  Identities=20%  Similarity=0.289  Sum_probs=169.4

Q ss_pred             CCCccccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCCC--EEEeCCCcEEecCeEEEccCCCCCCCCCCCCCC---CC
Q 014997           38 PGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LP  112 (414)
Q Consensus        38 ~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~--~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~---~~  112 (414)
                      |++....|.++.....+++++.+++++. ++|+.++++.+  .|.+.+| .+.||+||||||++++. |.++|.+   ..
T Consensus        52 pg~~~~~~~~l~~~l~~~~~~~gv~~~~-~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~-~~ipG~~~~~~~  128 (555)
T TIGR03143        52 PGILNTTGPELMQEMRQQAQDFGVKFLQ-AEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPRK-LGFPGEEEFTGR  128 (555)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHcCCEEec-cEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCccCC-CCCCCHHHhCCc
Confidence            3333333333334445667788999874 68999998663  5666666 58999999999999875 4456632   34


Q ss_pred             CEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEE
Q 014997          113 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF  192 (414)
Q Consensus       113 gv~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i  192 (414)
                      +++++.....      ....+++++|||||++|+|+|..|+++|.+|+++++.+++..   ....   ..+.+++.||++
T Consensus       129 ~v~~~~~~~~------~~~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~---~~~~---~~~~~~~~gV~i  196 (555)
T TIGR03143       129 GVAYCATCDG------EFFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTC---AKLI---AEKVKNHPKIEV  196 (555)
T ss_pred             eEEEEeecCh------hhcCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcccc---CHHH---HHHHHhCCCcEE
Confidence            5555432221      234689999999999999999999999999999999886532   2222   233345579999


Q ss_pred             EcCceEEEEEecCCCcEEEEE---eCCCcE----EecCE----EEEccCCcCCChhhhhcCCccc-CCCEEEcCCCCCCC
Q 014997          193 VKGASIKNLEAGSDGRVAAVK---LEDGST----IDADT----IVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRM  260 (414)
Q Consensus       193 ~~~~~v~~i~~~~~~~~~~v~---~~~g~~----i~~D~----vi~a~G~~p~~~~l~~~gl~~~-~g~i~vd~~~~t~~  260 (414)
                      ++++.|+++..  ++.+..+.   ..+|+.    ++||.    |++++|++|++.+++. ++..+ +|+|.||++++|+.
T Consensus       197 ~~~~~V~~i~~--~~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~-~l~l~~~G~I~vd~~~~Ts~  273 (555)
T TIGR03143       197 KFNTELKEATG--DDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELFKG-VVELDKRGYIPTNEDMETNV  273 (555)
T ss_pred             EeCCEEEEEEc--CCcEEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHHhh-hcccCCCCeEEeCCccccCC
Confidence            99999999974  33333333   345653    23676    9999999999988765 45554 57899999999999


Q ss_pred             CcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 014997          261 PGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  301 (414)
Q Consensus       261 ~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~  301 (414)
                      |+|||+|||+....         ..+..|..+|+.||.+|.
T Consensus       274 p~IyAaGDv~~~~~---------~~v~~A~~~G~~Aa~~i~  305 (555)
T TIGR03143       274 PGVYAAGDLRPKEL---------RQVVTAVADGAIAATSAE  305 (555)
T ss_pred             CCEEEceeccCCCc---------chheeHHhhHHHHHHHHH
Confidence            99999999975221         134568888888888874

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=99.93  E-value=8.9e-25  Score=212.64  Aligned_cols=230  Identities=25%  Similarity=0.298  Sum_probs=164.3

Q ss_pred             CHhHHHHcCCeEEcCCcEEEEeC----CC-----CEEEeCCCcEEecCeEEEccCCC-CCCCCCCCCCCCCCEEEecCHH
Q 014997           52 TPEWYKEKGIEMIYQDPVTSIDI----EK-----QTLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVA  121 (414)
Q Consensus        52 ~~~~~~~~~i~~~~~~~V~~id~----~~-----~~V~~~~g~~~~yd~LviAtG~~-~~~~~~~~g~~~~gv~~~~~~~  121 (414)
                      ..+.+.+.+++++.++.|..++.    ..     +.+..+ +..+.||+||||||+. ++ .|.++|.+.+++++..  +
T Consensus        74 ~~~~l~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~lviAtGs~~~~-~~~ipg~~~~~v~~~~--~  149 (352)
T PRK12770         74 GVKELEEAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLE-ELVKKYDAVLIATGTWKSR-KLGIPGEDLPGVYSAL--E  149 (352)
T ss_pred             HHHHHHhCCeEEecCcEEeeccccccccccccccccCCHH-HHHhhCCEEEEEeCCCCCC-cCCCCCccccCceeHH--H
Confidence            34566777999999877765433    01     111222 2247999999999995 54 4556776677776532  2


Q ss_pred             HHHHHHHh-----------hcCCCeEEEECCChHHHHHHHHHHhCCCc-EEEEeeCCcccccccCHHHHHHHHHHHHhCC
Q 014997          122 DADALISS-----------LEKAKKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLLQRLFTPSLAQRYEQLYQQNG  189 (414)
Q Consensus       122 ~~~~~~~~-----------~~~~~~vvVvGgG~~g~e~A~~l~~~g~~-Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~g  189 (414)
                      ....+...           ...+++++|||+|++|+|+|..|..+|.+ |+++++.+....    + ......+.++++|
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~----~-~~~~~~~~l~~~g  224 (352)
T PRK12770        150 YLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEA----P-AGKYEIERLIARG  224 (352)
T ss_pred             HHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhC----C-CCHHHHHHHHHcC
Confidence            22222110           11368999999999999999999999987 999988754211    1 1133445688999


Q ss_pred             cEEEcCceEEEEEecCCCcEEEEEe--------------------CCCcEEecCEEEEccCCcCCChhhhh-cCCccc-C
Q 014997          190 VKFVKGASIKNLEAGSDGRVAAVKL--------------------EDGSTIDADTIVIGIGAKPTVSPFER-VGLNSS-V  247 (414)
Q Consensus       190 v~i~~~~~v~~i~~~~~~~~~~v~~--------------------~~g~~i~~D~vi~a~G~~p~~~~l~~-~gl~~~-~  247 (414)
                      |++++++.+.+++..  +.+..+.+                    .+++.++||.+|+++|++|+..+..+ .|+..+ +
T Consensus       225 i~i~~~~~v~~i~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~~~~~~  302 (352)
T PRK12770        225 VEFLELVTPVRIIGE--GRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGIELNRK  302 (352)
T ss_pred             CEEeeccCceeeecC--CcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCceecCC
Confidence            999999999998743  33333332                    12357999999999999999877766 777654 4


Q ss_pred             CCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997          248 GGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       248 g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                      ++|.||++++|+.|+|||+|||+..+.          .+..|+.+|..+|.+|..
T Consensus       303 g~i~vd~~~~t~~~~vyaiGD~~~~~~----------~~~~A~~~g~~aa~~i~~  347 (352)
T PRK12770        303 GEIVVDEKHMTSREGVFAAGDVVTGPS----------KIGKAIKSGLRAAQSIHE  347 (352)
T ss_pred             CcEeeCCCcccCCCCEEEEcccccCcc----------hHHHHHHHHHHHHHHHHH
Confidence            689999999999999999999987432          456799999999998864

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=99.93  E-value=7e-25  Score=220.55  Aligned_cols=228  Identities=25%  Similarity=0.318  Sum_probs=163.8

Q ss_pred             CCHhHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHH---
Q 014997           51 QTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALI---  127 (414)
Q Consensus        51 ~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~---  127 (414)
                      +..+++++.|+++++++.+      .+.+.+++.. +.||+||||||+...+.+.++|.+.+++++...+.......   
T Consensus       195 ~~~~~l~~~gv~~~~~~~v------~~~v~~~~~~-~~~d~vvlAtGa~~~~~~~i~G~~~~gv~~~~~~l~~~~~~~~~  267 (457)
T PRK11749        195 REVERLLKLGVEIRTNTEV------GRDITLDELR-AGYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVAD  267 (457)
T ss_pred             HHHHHHHHcCCEEEeCCEE------CCccCHHHHH-hhCCEEEEccCCCCCCCCCCCCccCCCcEEHHHHHHHHhhcccc
Confidence            3456788899999998654      2234444333 78999999999963233455776677777653322222110   


Q ss_pred             HhhcCCCeEEEECCChHHHHHHHHHHhCCC-cEEEEeeCCc-ccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecC
Q 014997          128 SSLEKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS  205 (414)
Q Consensus       128 ~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~-~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~  205 (414)
                      ..+..+++|+|||+|.+|+|+|..|.++|. +|+++++.+. .++.  ..    ...+.+++.||++++++.+.++..++
T Consensus       268 ~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~--~~----~~~~~~~~~GV~i~~~~~v~~i~~~~  341 (457)
T PRK11749        268 YDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPA--SE----EEVEHAKEEGVEFEWLAAPVEILGDE  341 (457)
T ss_pred             ccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCC--CH----HHHHHHHHCCCEEEecCCcEEEEecC
Confidence            112368999999999999999999999997 8999998654 2321  11    22456788999999999999997543


Q ss_pred             CCcEEEEEe-------------------CCCcEEecCEEEEccCCcCCChhhh-hcCCccc-CCCEEEcC-CCCCCCCcE
Q 014997          206 DGRVAAVKL-------------------EDGSTIDADTIVIGIGAKPTVSPFE-RVGLNSS-VGGIQVDG-QFRTRMPGI  263 (414)
Q Consensus       206 ~~~~~~v~~-------------------~~g~~i~~D~vi~a~G~~p~~~~l~-~~gl~~~-~g~i~vd~-~~~t~~~~I  263 (414)
                      + .+..|.+                   .++++++||.||+++|.+|+..++. ..++..+ +|+|.||+ +++|+.|+|
T Consensus       342 ~-~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~~~gl~~~~~g~i~vd~~~~~Ts~~~V  420 (457)
T PRK11749        342 G-RVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDETGRTSLPGV  420 (457)
T ss_pred             C-ceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCchhhccccCccCCCCCCEEeCCCCCccCCCCE
Confidence            3 2223332                   1234799999999999999977654 4566553 57899998 899999999


Q ss_pred             EEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997          264 FAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       264 yA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                      ||+|||+..+.          .+..|..+|+.||.+|..
T Consensus       421 fA~GD~~~~~~----------~~~~A~~~G~~aA~~I~~  449 (457)
T PRK11749        421 FAGGDIVTGAA----------TVVWAVGDGKDAAEAIHE  449 (457)
T ss_pred             EEeCCcCCCch----------HHHHHHHHHHHHHHHHHH
Confidence            99999985321          466799999999998874

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=99.93  E-value=9.3e-25  Score=231.78  Aligned_cols=230  Identities=23%  Similarity=0.309  Sum_probs=171.7

Q ss_pred             CCHhHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCC-CCCCCCCCCCCCCCEEEecCHHHHHHHHH-
Q 014997           51 QTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADADALIS-  128 (414)
Q Consensus        51 ~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~-~~~~~~~~g~~~~gv~~~~~~~~~~~~~~-  128 (414)
                      +..+++++.||+++.++.+      .+.|++++.....||+||||||+. ++. +.++|.+.+++++..++.....+.. 
T Consensus       486 ~~~~~l~~~gv~~~~~~~v------~~~v~~~~l~~~~ydavvlAtGa~~~~~-l~ipG~~~~gV~~~~~~l~~~~~~~~  558 (752)
T PRK12778        486 VEIENLKKLGVKFETDVIV------GKTITIEELEEEGFKGIFIASGAGLPNF-MNIPGENSNGVMSSNEYLTRVNLMDA  558 (752)
T ss_pred             HHHHHHHHCCCEEECCCEE------CCcCCHHHHhhcCCCEEEEeCCCCCCCC-CCCCCCCCCCcEEHHHHHHHHhhccc
Confidence            3456788899999998544      345556555557899999999994 654 4568888889887665544322211 


Q ss_pred             -------hhcCCCeEEEECCChHHHHHHHHHHhCCCc-EEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEE
Q 014997          129 -------SLEKAKKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKN  200 (414)
Q Consensus       129 -------~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~-Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~  200 (414)
                             ....+++|+|||||++|+|+|..+.++|.+ ||++++++..   .++.... .+ +.+++.||++++++.+.+
T Consensus       559 ~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~---~~~~~~~-e~-~~~~~~GV~i~~~~~~~~  633 (752)
T PRK12778        559 ASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEE---EMPARLE-EV-KHAKEEGIEFLTLHNPIE  633 (752)
T ss_pred             ccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcc---cCCCCHH-HH-HHHHHcCCEEEecCcceE
Confidence                   123579999999999999999999999987 9999987641   1121211 12 346788999999999999


Q ss_pred             EEecCCCcEEEEEeC---------CC-----------cEEecCEEEEccCCcCCChhhhhc-CCccc-CCCEEEcCCCCC
Q 014997          201 LEAGSDGRVAAVKLE---------DG-----------STIDADTIVIGIGAKPTVSPFERV-GLNSS-VGGIQVDGQFRT  258 (414)
Q Consensus       201 i~~~~~~~~~~v~~~---------~g-----------~~i~~D~vi~a~G~~p~~~~l~~~-gl~~~-~g~i~vd~~~~t  258 (414)
                      +..++++++..+++.         +|           ++++||.||+|+|.+|+..++... ++..+ +|+|.||++++|
T Consensus       634 i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~~gl~~~~~G~i~vd~~~~T  713 (752)
T PRK12778        634 YLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTIVVDEEMQS  713 (752)
T ss_pred             EEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCccccccccCceECCCCCEEeCCCCCC
Confidence            976556766655541         22           259999999999999998766553 67664 578999999999


Q ss_pred             CCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997          259 RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       259 ~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                      +.|+|||+|||+..+.          .+..|..+|+.||.+|..
T Consensus       714 s~~gVfA~GD~~~g~~----------~vv~Av~~G~~AA~~I~~  747 (752)
T PRK12778        714 SIPGIYAGGDIVRGGA----------TVILAMGDGKRAAAAIDE  747 (752)
T ss_pred             CCCCEEEeCCccCCcH----------HHHHHHHHHHHHHHHHHH
Confidence            9999999999986432          455799999999999864

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=99.92  E-value=5.1e-24  Score=222.06  Aligned_cols=228  Identities=25%  Similarity=0.333  Sum_probs=161.2

Q ss_pred             CHhHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhc
Q 014997           52 TPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE  131 (414)
Q Consensus        52 ~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~  131 (414)
                      ..+++.+.|+++++++.+ +++     +.+++.. ..||+||||||+++...+.++|.+.++++...++...........
T Consensus       249 ~~~~l~~~Gv~i~~~~~v-~~d-----v~~~~~~-~~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~  321 (652)
T PRK12814        249 DIAPLRAMGAEFRFNTVF-GRD-----ITLEELQ-KEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGTALH  321 (652)
T ss_pred             HHHHHHHcCCEEEeCCcc-cCc-----cCHHHHH-hhcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHHHHhhcCCccc
Confidence            356778899999997643 222     2222222 359999999999864344567777778765422221111111234


Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCC-cEEEEeeCCc-ccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCc-
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR-  208 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~-~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~-  208 (414)
                      .+++|+|||+|++|+|+|..+.++|. +|+++.+.++ .++. .+    ..+.+. .+.||+|+++..+.++...+++. 
T Consensus       322 ~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa-~~----~ei~~a-~~eGV~i~~~~~~~~i~~~~~~~~  395 (652)
T PRK12814        322 PGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPA-NR----AEIEEA-LAEGVSLRELAAPVSIERSEGGLE  395 (652)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCC-CH----HHHHHH-HHcCCcEEeccCcEEEEecCCeEE
Confidence            68999999999999999999999986 5999998764 3332 12    223333 46799999999998887543221 


Q ss_pred             EEEEEeC---------------CCc--EEecCEEEEccCCcCCChhhhhcCCccc-CCCEEEcC-CCCCCCCcEEEEccc
Q 014997          209 VAAVKLE---------------DGS--TIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDG-QFRTRMPGIFAIGDV  269 (414)
Q Consensus       209 ~~~v~~~---------------~g~--~i~~D~vi~a~G~~p~~~~l~~~gl~~~-~g~i~vd~-~~~t~~~~IyA~GD~  269 (414)
                      +..+.+.               +|+  .+++|.||+++|..|+.++++..++..+ +|+|.||+ +++|+.|+|||+|||
T Consensus       396 v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ll~~~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv  475 (652)
T PRK12814        396 LTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIAEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDC  475 (652)
T ss_pred             EEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCcccccccCccccCCCcEeeCCCCCcCCCCCEEEcCCc
Confidence            2222221               222  6999999999999999999888888765 57899997 688999999999999


Q ss_pred             cccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997          270 AAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       270 a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                      +..+.          .+..|..+|+.||.+|..
T Consensus       476 ~~g~~----------~v~~Ai~~G~~AA~~I~~  498 (652)
T PRK12814        476 VTGAD----------IAINAVEQGKRAAHAIDL  498 (652)
T ss_pred             CCCch----------HHHHHHHHHHHHHHHHHH
Confidence            86532          456799999999988864

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=99.92  E-value=2.8e-23  Score=222.42  Aligned_cols=230  Identities=20%  Similarity=0.255  Sum_probs=168.2

Q ss_pred             CCHhHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCC-CCCCCCCCCCCCCCEEEecCHHHHHHHHHh
Q 014997           51 QTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADADALISS  129 (414)
Q Consensus        51 ~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~-~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~  129 (414)
                      +..+++++.||+++++..+      ++.+++++.....||+||||||+. |+ .+.++|.+.+|+++..++.........
T Consensus       361 ~~i~~l~~~Gv~f~~n~~v------G~dit~~~l~~~~yDAV~LAtGA~~pr-~l~IpG~dl~GV~~a~dfL~~~~~~~~  433 (944)
T PRK12779        361 DVVEKIKLLGGRFVKNFVV------GKTATLEDLKAAGFWKIFVGTGAGLPT-FMNVPGEHLLGVMSANEFLTRVNLMRG  433 (944)
T ss_pred             HHHHHHHhhcCeEEEeEEe------ccEEeHHHhccccCCEEEEeCCCCCCC-cCCCCCCcCcCcEEHHHHHHHHHhhcc
Confidence            4456788899999987543      456777776667899999999995 65 455688888999887655543322111


Q ss_pred             ----------hcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEE
Q 014997          130 ----------LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIK  199 (414)
Q Consensus       130 ----------~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~  199 (414)
                                ...+++|+|||||.+|+++|..+.++|.+|+++.+++..   .++ .....+.. ..+.||+++.+..++
T Consensus       434 ~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~---~mp-a~~~e~~~-a~eeGV~~~~~~~p~  508 (944)
T PRK12779        434 LDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKS---EMP-ARVEELHH-ALEEGINLAVLRAPR  508 (944)
T ss_pred             ccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCcc---ccc-ccHHHHHH-HHHCCCEEEeCcceE
Confidence                      125799999999999999999999999999999987531   122 12223333 346799999999999


Q ss_pred             EEEecC-CCcEEEEEe---------C--------CC--cEEecCEEEEccCCcCCChhhh-hcCCccc-CCCEEEcC-CC
Q 014997          200 NLEAGS-DGRVAAVKL---------E--------DG--STIDADTIVIGIGAKPTVSPFE-RVGLNSS-VGGIQVDG-QF  256 (414)
Q Consensus       200 ~i~~~~-~~~~~~v~~---------~--------~g--~~i~~D~vi~a~G~~p~~~~l~-~~gl~~~-~g~i~vd~-~~  256 (414)
                      +|..++ ++.+..+.+         .        +|  .+++||.||+|+|..|+..+.. ..+++.+ +|.|.||+ .+
T Consensus       509 ~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~~~~~gle~~~~G~I~vd~~~~  588 (944)
T PRK12779        509 EFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQ  588 (944)
T ss_pred             EEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChhhhhcccCceECCCCCEEECCCCC
Confidence            997543 234544332         1        22  3699999999999999865432 2467654 57899997 58


Q ss_pred             CCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997          257 RTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       257 ~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                      +|+.|+|||+|||+..+.          .+..|+.+|+.||.+|..
T Consensus       589 ~Ts~pgVFAaGD~~~G~~----------~vv~Ai~eGr~AA~~I~~  624 (944)
T PRK12779        589 RTSIKGVYSGGDAARGGS----------TAIRAAGDGQAAAKEIVG  624 (944)
T ss_pred             ccCCCCEEEEEcCCCChH----------HHHHHHHHHHHHHHHHHH
Confidence            999999999999987432          355699999999999975

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=99.91  E-value=2.6e-23  Score=209.84  Aligned_cols=234  Identities=21%  Similarity=0.322  Sum_probs=160.7

Q ss_pred             CCHhHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCC-CCCCCCCCCCCCCCEEEecCHH-HHHHHH-
Q 014997           51 QTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVA-DADALI-  127 (414)
Q Consensus        51 ~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~-~~~~~~~~g~~~~gv~~~~~~~-~~~~~~-  127 (414)
                      +..+++++.||++++++.|. .+...      +.....||+||+|||+. ++. +.++|.+.+|+++...+. +..... 
T Consensus       198 ~~~~~~~~~Gv~~~~~~~v~-~~~~~------~~~~~~~d~VilAtGa~~~~~-l~i~G~~~~gV~~~~~~l~~~~~~~~  269 (485)
T TIGR01317       198 RRIDLLSAEGIDFVTNTEIG-VDISA------DELKEQFDAVVLAGGATKPRD-LPIPGRELKGIHYAMEFLPSATKALL  269 (485)
T ss_pred             HHHHHHHhCCCEEECCCEeC-CccCH------HHHHhhCCEEEEccCCCCCCc-CCCCCcCCCCcEeHHHHHHHHhhhhc
Confidence            34578888999999987663 22111      11236899999999998 554 456888888998764322 111111 


Q ss_pred             --------HhhcCCCeEEEECCChHHHHHHHHHHhCC-CcEEEEeeCCcccccccC----H------HHHHHHHHHHHhC
Q 014997          128 --------SSLEKAKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHLLQRLFT----P------SLAQRYEQLYQQN  188 (414)
Q Consensus       128 --------~~~~~~~~vvVvGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~~l~~~~~----~------~~~~~~~~~l~~~  188 (414)
                              .....+++|+|||+|++|+|+|..+.++| .+|+++++.++++.....    +      +.....++..+..
T Consensus       270 ~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~  349 (485)
T TIGR01317       270 GKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHY  349 (485)
T ss_pred             cccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhc
Confidence                    11136799999999999999988887776 579999988765432111    0      1122233333445


Q ss_pred             CcEE-EcCceEEEEEecCCCcEEEEEe--------CCC-----------cEEecCEEEEccCCc-CCChhhhhcCCccc-
Q 014997          189 GVKF-VKGASIKNLEAGSDGRVAAVKL--------EDG-----------STIDADTIVIGIGAK-PTVSPFERVGLNSS-  246 (414)
Q Consensus       189 gv~i-~~~~~v~~i~~~~~~~~~~v~~--------~~g-----------~~i~~D~vi~a~G~~-p~~~~l~~~gl~~~-  246 (414)
                      |+.+ +++..+.+|..++++.+..+.+        ++|           ++++||.||+++|.. |++.+++..++..+ 
T Consensus       350 gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~gl~~~~  429 (485)
T TIGR01317       350 GRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGVKKTR  429 (485)
T ss_pred             CccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCccccccccCcccCC
Confidence            7654 4577788886544466655542        133           269999999999996 88888888888754 


Q ss_pred             CCCEEE-cCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997          247 VGGIQV-DGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       247 ~g~i~v-d~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                      +|.+.+ |++++|+.|+|||+|||+..+.          ....|..+|+.||.+|..
T Consensus       430 ~G~i~~~~~~~~Ts~~gVfAaGD~~~g~~----------~~~~Av~~G~~AA~~i~~  476 (485)
T TIGR01317       430 RGNISAGYDDYSTSIPGVFAAGDCRRGQS----------LIVWAINEGRKAAAAVDR  476 (485)
T ss_pred             CCCEEecCCCceECCCCEEEeeccCCCcH----------HHHHHHHHHHHHHHHHHH
Confidence            567754 5789999999999999986432          345589999999988864

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=99.91  E-value=4.3e-23  Score=207.51  Aligned_cols=229  Identities=23%  Similarity=0.292  Sum_probs=166.3

Q ss_pred             CCHhHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHH--HHHHH
Q 014997           51 QTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA--DALIS  128 (414)
Q Consensus        51 ~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~--~~~~~  128 (414)
                      +..+++++.|++++++++|..      .+.+++ ....||+||+|||+.+...+.++|.+.+|+++..++...  ..+..
T Consensus       196 ~~~~~~~~~Gv~~~~~~~v~~------~~~~~~-~~~~~D~vilAtGa~~~~~~~i~g~~~~gV~~a~~~l~~~~~~~~~  268 (467)
T TIGR01318       196 RRREIFTAMGIEFHLNCEVGR------DISLDD-LLEDYDAVFLGVGTYRSMRGGLPGEDAPGVLQALPFLIANTRQLMG  268 (467)
T ss_pred             HHHHHHHHCCCEEECCCEeCC------ccCHHH-HHhcCCEEEEEeCCCCCCcCCCCCcCCCCcEEHHHHHHHHHHHhcC
Confidence            345778899999999876621      122222 125799999999998754445678888898875432211  11110


Q ss_pred             h---------hcCCCeEEEECCChHHHHHHHHHHhCCC-cEEEEeeCCcc-cccccCHHHHHHHHHHHHhCCcEEEcCce
Q 014997          129 S---------LEKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGAS  197 (414)
Q Consensus       129 ~---------~~~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~-l~~~~~~~~~~~~~~~l~~~gv~i~~~~~  197 (414)
                      .         ...+++++|||+|++|+++|..+.++|. +||++++.+.. ++. .+.    . .+.+++.||++++++.
T Consensus       269 ~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~-~~~----e-~~~~~~~GV~~~~~~~  342 (467)
T TIGR01318       269 LPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPG-SRR----E-VANAREEGVEFLFNVQ  342 (467)
T ss_pred             CCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCC-CHH----H-HHHHHhcCCEEEecCC
Confidence            0         1247899999999999999999999995 79999987653 331 222    2 2346788999999999


Q ss_pred             EEEEEecCCCcEEEEEeC---------C-----------CcEEecCEEEEccCCcCCC-hhhhhcCCccc-CCCEEEc--
Q 014997          198 IKNLEAGSDGRVAAVKLE---------D-----------GSTIDADTIVIGIGAKPTV-SPFERVGLNSS-VGGIQVD--  253 (414)
Q Consensus       198 v~~i~~~~~~~~~~v~~~---------~-----------g~~i~~D~vi~a~G~~p~~-~~l~~~gl~~~-~g~i~vd--  253 (414)
                      +.++..++++++..+++.         +           .++++||.||+++|++|+. .+++..++..+ +|+|.||  
T Consensus       343 ~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~  422 (467)
T TIGR01318       343 PVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGITLDSWGRIITGDV  422 (467)
T ss_pred             cEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCccccccccCccCCCCCCEEeCCc
Confidence            999976555666555431         1           2369999999999999984 56777777765 5789999  


Q ss_pred             --CCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997          254 --GQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       254 --~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                        .+++|+.|+|||+|||+..+.          .+..|..+|+.||.+|..
T Consensus       423 ~~~~~~T~~~gVfa~GD~~~~~~----------~~~~Ai~~G~~aA~~i~~  463 (467)
T TIGR01318       423 SYLPYQTTNPKIFAGGDAVRGAD----------LVVTAVAEGRQAAQGILD  463 (467)
T ss_pred             cccCccCCCCCEEEECCcCCCcc----------HHHHHHHHHHHHHHHHHH
Confidence              678999999999999987432          355799999999999864

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=99.91  E-value=3.1e-23  Score=209.09  Aligned_cols=233  Identities=23%  Similarity=0.286  Sum_probs=163.1

Q ss_pred             CHhHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHH--HHHH-
Q 014997           52 TPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADAD--ALIS-  128 (414)
Q Consensus        52 ~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~--~~~~-  128 (414)
                      ..+++.+.|+++++++.+. .+...      +.....||+||||||+.....+.++|.+.+|+++..++....  .+.. 
T Consensus       199 ~~~~~~~~gv~~~~~~~v~-~~~~~------~~~~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~  271 (471)
T PRK12810        199 RIELMEAEGIEFRTNVEVG-KDITA------EELLAEYDAVFLGTGAYKPRDLGIPGRDLDGVHFAMDFLIQNTRRVLGD  271 (471)
T ss_pred             HHHHHHhCCcEEEeCCEEC-CcCCH------HHHHhhCCEEEEecCCCCCCcCCCCCccCCCcEEHHHHHHHHHhhhccc
Confidence            4567888999999986552 22111      111358999999999973233456787788888753322111  0111 


Q ss_pred             -----hhcCCCeEEEECCChHHHHHHHHHHhCCC-cEEEEeeCCcccccccCH----HH-HHHHHHHHHhCCcEEEcCce
Q 014997          129 -----SLEKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHLLQRLFTP----SL-AQRYEQLYQQNGVKFVKGAS  197 (414)
Q Consensus       129 -----~~~~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~l~~~~~~----~~-~~~~~~~l~~~gv~i~~~~~  197 (414)
                           ....+++|+|||+|++|+|+|..+.++|. +|++++..+.+.....+.    .. .....+.+++.||++++++.
T Consensus       272 ~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~  351 (471)
T PRK12810        272 ETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQ  351 (471)
T ss_pred             cccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccC
Confidence                 12357999999999999999998888885 788766554332211110    00 11134556788999999999


Q ss_pred             EEEEEecCCCcEEEEEe-----CCC---------cEEecCEEEEccCCcCCC-hhhhhcCCccc-CCCEEEc-CCCCCCC
Q 014997          198 IKNLEAGSDGRVAAVKL-----EDG---------STIDADTIVIGIGAKPTV-SPFERVGLNSS-VGGIQVD-GQFRTRM  260 (414)
Q Consensus       198 v~~i~~~~~~~~~~v~~-----~~g---------~~i~~D~vi~a~G~~p~~-~~l~~~gl~~~-~g~i~vd-~~~~t~~  260 (414)
                      ++++.. +++++..|++     .+|         +++++|.||+++|.+|+. .++++.++..+ +|.+.+| ++++|+.
T Consensus       352 ~~~i~~-~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~g~i~vd~~~~~Ts~  430 (471)
T PRK12810        352 TKEFEG-ENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNAYQTSN  430 (471)
T ss_pred             ceEEEc-cCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCcccCCCCCEEeCCCcccCCC
Confidence            999974 3566655543     222         479999999999999985 47888888765 5789998 7999999


Q ss_pred             CcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997          261 PGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       261 ~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                      |+|||+|||+..+.          .+..|..+|+.||.+|..
T Consensus       431 ~gVfa~GD~~~g~~----------~~~~Av~~G~~AA~~i~~  462 (471)
T PRK12810        431 PKVFAAGDMRRGQS----------LVVWAIAEGRQAARAIDA  462 (471)
T ss_pred             CCEEEccccCCCch----------hHHHHHHHHHHHHHHHHH
Confidence            99999999987322          355699999999998864

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=99.91  E-value=4.9e-23  Score=222.39  Aligned_cols=231  Identities=18%  Similarity=0.279  Sum_probs=165.1

Q ss_pred             CCCHhHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCc-EEecCeEEEccCCC-CCCCCCCCCCCCCCEEEecCHHHHHHHH
Q 014997           50 RQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK-LLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADADALI  127 (414)
Q Consensus        50 ~~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~-~~~yd~LviAtG~~-~~~~~~~~g~~~~gv~~~~~~~~~~~~~  127 (414)
                      .+..+++++.||++++++.+ +     +.+++++-. ...||+||||||+. ++ .+.++|.+.+++++..++.....+.
T Consensus       484 ~~~~~~l~~~Gv~~~~~~~v-g-----~~~~~~~l~~~~~yDaViIATGa~~pr-~l~IpG~~l~gV~~a~~fL~~~~~~  556 (1006)
T PRK12775        484 DREVQRLVDIGVKIETNKVI-G-----KTFTVPQLMNDKGFDAVFLGVGAGAPT-FLGIPGEFAGQVYSANEFLTRVNLM  556 (1006)
T ss_pred             HHHHHHHHHCCCEEEeCCcc-C-----CccCHHHHhhccCCCEEEEecCCCCCC-CCCCCCcCCCCcEEHHHHHHHHHhc
Confidence            45567889999999998543 2     223322211 24699999999995 55 4557888888988765554433321


Q ss_pred             H---------hhcCCCeEEEECCChHHHHHHHHHHhCCCc-EEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCce
Q 014997          128 S---------SLEKAKKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGAS  197 (414)
Q Consensus       128 ~---------~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~-Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~  197 (414)
                      .         ....+++|+|||||++|+++|..+.++|.+ |+++.+....-   ++... .. .+.+++.||++++++.
T Consensus       557 ~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~e---m~a~~-~e-~~~a~eeGI~~~~~~~  631 (1006)
T PRK12775        557 GGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAE---APARI-EE-IRHAKEEGIDFFFLHS  631 (1006)
T ss_pred             CccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCccc---CCCCH-HH-HHHHHhCCCEEEecCC
Confidence            1         123689999999999999999999999975 78887654321   11111 11 2456788999999999


Q ss_pred             EEEEEecCCCcEEEEEeC-----------------CC--cEEecCEEEEccCCcCCChhhhh-cCCccc-CCCEEEcC--
Q 014997          198 IKNLEAGSDGRVAAVKLE-----------------DG--STIDADTIVIGIGAKPTVSPFER-VGLNSS-VGGIQVDG--  254 (414)
Q Consensus       198 v~~i~~~~~~~~~~v~~~-----------------~g--~~i~~D~vi~a~G~~p~~~~l~~-~gl~~~-~g~i~vd~--  254 (414)
                      +.++..+++|++..+.+.                 +|  .+++||.||+++|..|+..++.. .++..+ +|.|.+|+  
T Consensus       632 p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~l~~~G~I~vd~~~  711 (1006)
T PRK12775        632 PVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQSTPGLALNKWGNIAADDGK  711 (1006)
T ss_pred             cEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChhhhhccCCcccCCCCcEEeCCCc
Confidence            999976566776655431                 12  26999999999999999877654 366654 57799996  


Q ss_pred             ---CCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997          255 ---QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       255 ---~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                         +++||.|+|||+|||+..+.          .+..|+.+|+.||.+|..
T Consensus       712 v~~~~~Ts~pgVFAaGDv~~G~~----------~vv~Ai~~Gr~AA~~I~~  752 (1006)
T PRK12775        712 LESTQSTNLPGVFAGGDIVTGGA----------TVILAMGAGRRAARSIAT  752 (1006)
T ss_pred             cccCcCCCCCCEEEecCcCCCcc----------HHHHHHHHHHHHHHHHHH
Confidence               78999999999999986432          455688888888888753

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.90  E-value=2e-22  Score=210.78  Aligned_cols=229  Identities=21%  Similarity=0.286  Sum_probs=164.3

Q ss_pred             CCHhHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHH--HHHHHHH
Q 014997           51 QTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVA--DADALIS  128 (414)
Q Consensus        51 ~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~--~~~~~~~  128 (414)
                      +..+++++.|+++++++.|.      ..+.+++. ...||+|++|||+.....+.+++.+.+|++....+.  .......
T Consensus       382 ~~~~~~~~~Gv~~~~~~~v~------~~i~~~~~-~~~~DavilAtGa~~~~~l~i~g~~~~Gv~~a~~~l~~~~~~~~~  454 (654)
T PRK12769        382 RRREIFSAMGIEFELNCEVG------KDISLESL-LEDYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANTKQVMG  454 (654)
T ss_pred             HHHHHHHHCCeEEECCCEeC------CcCCHHHH-HhcCCEEEEeCCCCCCCCCCCCCCCCCCeEEhHHHHHHHHhhhcc
Confidence            34677888999999987652      11222111 247999999999975433455777788887542211  1111110


Q ss_pred             h---------hcCCCeEEEECCChHHHHHHHHHHhCCC-cEEEEeeCCcc-cccccCHHHHHHHHHHHHhCCcEEEcCce
Q 014997          129 S---------LEKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGAS  197 (414)
Q Consensus       129 ~---------~~~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~-l~~~~~~~~~~~~~~~l~~~gv~i~~~~~  197 (414)
                      .         ...+++|+|||||++|+++|..+.++|. +|+++.+.+.. ++ ..+     ...+.+++.||+++++..
T Consensus       455 ~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~-~~~-----~e~~~~~~~Gv~~~~~~~  528 (654)
T PRK12769        455 LEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMP-GSK-----KEVKNAREEGANFEFNVQ  528 (654)
T ss_pred             CccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCC-CCH-----HHHHHHHHcCCeEEeccC
Confidence            0         1257899999999999999999999986 69999987653 32 111     223457889999999999


Q ss_pred             EEEEEecCCCcEEEEEe---------CCC-----------cEEecCEEEEccCCcCCC-hhhhhcCCccc-CCCEEEcC-
Q 014997          198 IKNLEAGSDGRVAAVKL---------EDG-----------STIDADTIVIGIGAKPTV-SPFERVGLNSS-VGGIQVDG-  254 (414)
Q Consensus       198 v~~i~~~~~~~~~~v~~---------~~g-----------~~i~~D~vi~a~G~~p~~-~~l~~~gl~~~-~g~i~vd~-  254 (414)
                      ++++..++++++..|++         .+|           .++++|.||+++|+.|+. .++++.++..+ +|.|.||+ 
T Consensus       529 ~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~  608 (654)
T PRK12769        529 PVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVE  608 (654)
T ss_pred             cEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCccccccccCCcCCCCCCEEeCCC
Confidence            99997555676655554         122           269999999999999985 56778888775 57799985 


Q ss_pred             ---CCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997          255 ---QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       255 ---~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                         +++|+.|+|||+||++..+.          .+..|+.+|+.||.+|..
T Consensus       609 ~~~~~~Ts~~gVfAaGD~~~g~~----------~vv~Ai~~Gr~AA~~I~~  649 (654)
T PRK12769        609 SQYRYQTSNPKIFAGGDAVRGAD----------LVVTAMAEGRHAAQGIID  649 (654)
T ss_pred             cccCcccCCCCEEEcCCcCCCCc----------HHHHHHHHHHHHHHHHHH
Confidence               48999999999999987543          456799999999999874

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=99.90  E-value=2.2e-22  Score=213.75  Aligned_cols=223  Identities=24%  Similarity=0.296  Sum_probs=156.3

Q ss_pred             CCHhHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHH--
Q 014997           51 QTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS--  128 (414)
Q Consensus        51 ~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~--  128 (414)
                      +..+++.+.||+++++...        .+.+++.+...||+||||||+++...+.++|.. +++..  .++....+..  
T Consensus       592 ~~ie~l~~~GVe~~~g~~~--------d~~ve~l~~~gYDaVIIATGA~~~~~l~I~G~~-~~v~~--avefL~~~~~~~  660 (1012)
T TIGR03315       592 KDIELVKFHGVEFKYGCSP--------DLTVAELKNQGYKYVILAIGAWKHGPLRLEGGG-ERVLK--SLEFLRAFKEGP  660 (1012)
T ss_pred             HHHHHHHhcCcEEEEeccc--------ceEhhhhhcccccEEEECCCCCCCCCCCcCCCC-cceee--HHHHHHHhhccc
Confidence            4456778889999987321        122333345679999999999854433444432 33332  2333333221  


Q ss_pred             -hhcCCCeEEEECCChHHHHHHHHHHhC-CC-cEEEEeeCCc-ccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEec
Q 014997          129 -SLEKAKKVVVVGGGYIGMEVAAAAVGW-KL-DTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG  204 (414)
Q Consensus       129 -~~~~~~~vvVvGgG~~g~e~A~~l~~~-g~-~Vtlv~~~~~-~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~  204 (414)
                       ....+++|+|||||++|+|+|..+.+. |. +|+++.+..+ .++. ..+    .+.+. .+.||+++++..+.++. +
T Consensus       661 ~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa-~~e----El~~a-leeGVe~~~~~~p~~I~-~  733 (1012)
T TIGR03315       661 TINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPA-SRE----ELEEA-LEDGVDFKELLSPESFE-D  733 (1012)
T ss_pred             cccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCcccccc-CHH----HHHHH-HHcCCEEEeCCceEEEE-C
Confidence             234689999999999999999998876 74 7999998763 3331 222    33333 35799999988888876 1


Q ss_pred             CCCcEEEE--------------EeCCC--cEEecCEEEEccCCcCCChhhhhcCCccc-CCCEEEcCC-CCCCCCcEEEE
Q 014997          205 SDGRVAAV--------------KLEDG--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQ-FRTRMPGIFAI  266 (414)
Q Consensus       205 ~~~~~~~v--------------~~~~g--~~i~~D~vi~a~G~~p~~~~l~~~gl~~~-~g~i~vd~~-~~t~~~~IyA~  266 (414)
                        +.+...              ...+|  .+++||.||+|+|.+|+.+++++.++..+ +|+|.||++ ++|+.|+|||+
T Consensus       734 --g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~lle~~GL~ld~~G~I~VD~~~~~Ts~pgVFAa  811 (1012)
T TIGR03315       734 --GTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDLLQKNGIPLDEYGWPVVNQATGETNITNVFVI  811 (1012)
T ss_pred             --CeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChHHHHhcCcccCCCCCEEeCCCCCccCCCCEEEE
Confidence              222111              11123  36999999999999999999988888764 578999986 89999999999


Q ss_pred             ccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 014997          267 GDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA  303 (414)
Q Consensus       267 GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~  303 (414)
                      |||+..+.          .+..|+.+|+.||.+|++.
T Consensus       812 GD~a~GP~----------tVv~AIaqGr~AA~nIl~~  838 (1012)
T TIGR03315       812 GDANRGPA----------TIVEAIADGRKAANAILSR  838 (1012)
T ss_pred             eCcCCCcc----------HHHHHHHHHHHHHHHHhcc
Confidence            99986543          4667999999999999864

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK13984 putative oxidoreductase; Provisional

Probab=99.90  E-value=4.1e-22  Score=207.15  Aligned_cols=227  Identities=20%  Similarity=0.269  Sum_probs=157.1

Q ss_pred             CCHhHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhh
Q 014997           51 QTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL  130 (414)
Q Consensus        51 ~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~  130 (414)
                      +..+++++.|++++.++.|.. +     +.+++ ....||+||||||+.+.+.+.++|.+.++++..  .+....+...+
T Consensus       338 ~~~~~~~~~gv~~~~~~~v~~-~-----~~~~~-~~~~yD~vilAtGa~~~r~l~i~G~~~~gv~~a--~~~l~~~~~~~  408 (604)
T PRK13984        338 KDIAFIEALGVKIHLNTRVGK-D-----IPLEE-LREKHDAVFLSTGFTLGRSTRIPGTDHPDVIQA--LPLLREIRDYL  408 (604)
T ss_pred             HHHHHHHHCCcEEECCCEeCC-c-----CCHHH-HHhcCCEEEEEcCcCCCccCCCCCcCCcCeEeH--HHHHHHHHhhh
Confidence            345788899999999876631 1     11211 135899999999997433455677777777653  23233332221


Q ss_pred             -------cCCCeEEEECCChHHHHHHHHHHhCCC------cEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCce
Q 014997          131 -------EKAKKVVVVGGGYIGMEVAAAAVGWKL------DTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGAS  197 (414)
Q Consensus       131 -------~~~~~vvVvGgG~~g~e~A~~l~~~g~------~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~  197 (414)
                             ..+++|+|||||++|+|+|..|.+++.      +|+++.... ... .++.... .+.+ +.+.||+++++..
T Consensus       409 ~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r-~~~-~~~~~~~-e~~~-~~~~GV~i~~~~~  484 (604)
T PRK13984        409 RGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLER-TFE-EMPADME-EIEE-GLEEGVVIYPGWG  484 (604)
T ss_pred             ccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEecccc-Ccc-cCCCCHH-HHHH-HHHcCCEEEeCCC
Confidence                   236899999999999999999998753      688764321 111 1222222 2333 3467999999998


Q ss_pred             EEEEEecCCCcEEEEEeC-------------------CCcEEecCEEEEccCCcCCChhhhh---cCCcccCCCEEEcCC
Q 014997          198 IKNLEAGSDGRVAAVKLE-------------------DGSTIDADTIVIGIGAKPTVSPFER---VGLNSSVGGIQVDGQ  255 (414)
Q Consensus       198 v~~i~~~~~~~~~~v~~~-------------------~g~~i~~D~vi~a~G~~p~~~~l~~---~gl~~~~g~i~vd~~  255 (414)
                      +.++.. +++.+..+++.                   +++++++|.||+++|++|+++++..   .++..++|+|.||++
T Consensus       485 ~~~i~~-~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~~~G~i~vd~~  563 (604)
T PRK13984        485 PMEVVI-ENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEFVRGRILTNEY  563 (604)
T ss_pred             CEEEEc-cCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCccccCCeEEeCCC
Confidence            888864 35555555431                   1246999999999999999887753   245555678999999


Q ss_pred             CCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997          256 FRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       256 ~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                      ++|++|+|||+|||+..+.           ...|..+|+.||.+|..
T Consensus       564 ~~Ts~~gVfAaGD~~~~~~-----------~v~Ai~~G~~AA~~I~~  599 (604)
T PRK13984        564 GQTSIPWLFAGGDIVHGPD-----------IIHGVADGYWAAEGIDM  599 (604)
T ss_pred             CccCCCCEEEecCcCCchH-----------HHHHHHHHHHHHHHHHH
Confidence            9999999999999987542           34588999999998864

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.89  E-value=7.6e-22  Score=205.67  Aligned_cols=228  Identities=20%  Similarity=0.288  Sum_probs=162.6

Q ss_pred             CHhHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHH--HHHHH-
Q 014997           52 TPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA--DALIS-  128 (414)
Q Consensus        52 ~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~--~~~~~-  128 (414)
                      ..+++++.||++++++++.      +.+.+++ ....||+|++|||+.....+.+++.+.+|+++...+...  ..+.. 
T Consensus       366 ~~~~~~~~Gv~~~~~~~v~------~~~~~~~-l~~~~DaV~latGa~~~~~~~i~g~~~~gv~~a~~~l~~~~~~~~~~  438 (639)
T PRK12809        366 RREIFTAMGIDFHLNCEIG------RDITFSD-LTSEYDAVFIGVGTYGMMRADLPHEDAPGVIQALPFLTAHTRQLMGL  438 (639)
T ss_pred             HHHHHHHCCeEEEcCCccC------CcCCHHH-HHhcCCEEEEeCCCCCCCCCCCCCCccCCcEeHHHHHHHHHHhhccC
Confidence            4577889999999987662      1222222 235799999999997544445677777888763222111  11110 


Q ss_pred             --------hhcCCCeEEEECCChHHHHHHHHHHhCCC-cEEEEeeCCcc-cccccCHHHHHHHHHHHHhCCcEEEcCceE
Q 014997          129 --------SLEKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGASI  198 (414)
Q Consensus       129 --------~~~~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~-l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v  198 (414)
                              ....+++|+|+|+|.+++++|..+.++|. +||++.++++. ++. ...    .+. .+++.||++++++.+
T Consensus       439 ~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~-~~~----e~~-~a~~eGv~~~~~~~~  512 (639)
T PRK12809        439 PESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPG-SRK----EVV-NAREEGVEFQFNVQP  512 (639)
T ss_pred             ccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCC-CHH----HHH-HHHHcCCeEEeccCC
Confidence                    01257899999999999999999888885 79999987654 331 112    222 356789999999999


Q ss_pred             EEEEecCCCcEEEEEe---C------CC-----------cEEecCEEEEccCCcCCC-hhhhhcCCccc-CCCEEEcC--
Q 014997          199 KNLEAGSDGRVAAVKL---E------DG-----------STIDADTIVIGIGAKPTV-SPFERVGLNSS-VGGIQVDG--  254 (414)
Q Consensus       199 ~~i~~~~~~~~~~v~~---~------~g-----------~~i~~D~vi~a~G~~p~~-~~l~~~gl~~~-~g~i~vd~--  254 (414)
                      ++|..++++++..+.+   .      +|           ..+++|.||+++|++|+. .++++.++..+ +|.|.||+  
T Consensus       513 ~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~  592 (639)
T PRK12809        513 QYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVG  592 (639)
T ss_pred             EEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCccccccccCcccCCCCCEEeCCCc
Confidence            9997655666655432   1      12           369999999999999974 56777788765 57788985  


Q ss_pred             --CCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997          255 --QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       255 --~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                        +++|+.|+|||+|||+..+.          .+..|+.+|+.||++|..
T Consensus       593 ~~~~~Ts~~gVfA~GD~~~g~~----------~vv~Ai~~Gr~AA~~i~~  632 (639)
T PRK12809        593 YLPTQTHLKKVFAGGDAVHGAD----------LVVTAMAAGRQAARDMLT  632 (639)
T ss_pred             ccCcccCCCCEEEcCCCCCCch----------HHHHHHHHHHHHHHHHHH
Confidence              48999999999999986532          456799999999998874

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=9.5e-22  Score=179.14  Aligned_cols=208  Identities=27%  Similarity=0.432  Sum_probs=160.7

Q ss_pred             EEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997           86 LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus        86 ~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      .++++++|||||.+|+ .|.+||..    .+.-+   ++++......+.+.+|||+|++++|||..|+..|.+||+..|+
T Consensus       159 ~~ta~~fvIatG~RPr-Yp~IpG~~----Ey~IT---SDDlFsl~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRS  230 (503)
T KOG4716|consen  159 FLTAENFVIATGLRPR-YPDIPGAK----EYGIT---SDDLFSLPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRS  230 (503)
T ss_pred             EeecceEEEEecCCCC-CCCCCCce----eeeec---ccccccccCCCCceEEEccceeeeehhhhHhhcCCCcEEEEEE
Confidence            5899999999999997 56655422    22212   3344444455677789999999999999999999999999885


Q ss_pred             CcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeC---CC--cEEecCEEEEccCCcCCChh--h
Q 014997          166 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DG--STIDADTIVIGIGAKPTVSP--F  238 (414)
Q Consensus       166 ~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~---~g--~~i~~D~vi~a~G~~p~~~~--l  238 (414)
                      -  +-+.||.++++.+.+.++++||+|...+.+..+++.+++++ .|...   .+  -+-++|.|+||+|..+.++-  |
T Consensus       231 I--~LrGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l-~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L  307 (503)
T KOG4716|consen  231 I--LLRGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKL-RVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNL  307 (503)
T ss_pred             e--ecccccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcE-EEEeecccccccccchhhhhhhhhccccchhhcCC
Confidence            3  33569999999999999999999999988888887777763 22221   22  24679999999999998763  5


Q ss_pred             hhcCCcc--cCCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC--CCCCCCCc
Q 014997          239 ERVGLNS--SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPY  313 (414)
Q Consensus       239 ~~~gl~~--~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~~~--~~~~~~p~  313 (414)
                      .++|++.  ..+.|.||+.-+|++|+|||+||+....         .|.-..|.+.|+..|+.+.++..  ..|..+|.
T Consensus       308 ~~~GVk~n~ks~KI~v~~~e~t~vp~vyAvGDIl~~k---------pELTPvAIqsGrlLa~Rlf~gs~q~~dy~~V~T  377 (503)
T KOG4716|consen  308 DNAGVKTNEKSGKIPVDDEEATNVPYVYAVGDILEDK---------PELTPVAIQSGRLLARRLFAGSTQLMDYDDVAT  377 (503)
T ss_pred             CccceeecccCCccccChHHhcCCCceEEecceecCC---------cccchhhhhhchHHHHHHhcCcceeeeccCCce
Confidence            6778776  3678999999999999999999998743         23455699999999999987654  34666664

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=1.5e-22  Score=174.43  Aligned_cols=228  Identities=21%  Similarity=0.315  Sum_probs=172.2

Q ss_pred             CCCCCCCCCcc-ccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCCC--EEEeCCCcEEecCeEEEccCCCCCCCCCCCC
Q 014997           32 KKPARLPGFHT-CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIG  108 (414)
Q Consensus        32 ~~~~~l~~~~~-~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~--~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g  108 (414)
                      ...+++||||. ++|.+++.+.+++..+.|.+++. ..|.++|...+  .|.++ .+.+.+|.+|+|||+..+++.. ||
T Consensus        55 T~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i~t-EtVskv~~sskpF~l~td-~~~v~~~avI~atGAsAkRl~~-pg  131 (322)
T KOG0404|consen   55 TDVENFPGFPDGITGPELMDKMRKQSERFGTEIIT-ETVSKVDLSSKPFKLWTD-ARPVTADAVILATGASAKRLHL-PG  131 (322)
T ss_pred             eccccCCCCCcccccHHHHHHHHHHHHhhcceeee-eehhhccccCCCeEEEec-CCceeeeeEEEecccceeeeec-CC
Confidence            45689999996 89999999999999999999998 58999998775  55554 4468999999999998887643 34


Q ss_pred             CCCCCEEEecCHHHHHHHHHh--hcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHH-HHH
Q 014997          109 GYLPGVHYIRDVADADALISS--LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE-QLY  185 (414)
Q Consensus       109 ~~~~gv~~~~~~~~~~~~~~~--~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~-~~l  185 (414)
                      . .++.+.-+.+..|.-+...  +..+|..+|||||.++||=|.+|.+.+.+|.+++|++.+-.       +..++ +..
T Consensus       132 ~-ge~~fWqrGiSaCAVCDGaapifrnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRA-------s~~Mq~ra~  203 (322)
T KOG0404|consen  132 E-GEGEFWQRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRA-------SKIMQQRAE  203 (322)
T ss_pred             C-CcchHHhcccchhhcccCcchhhcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhH-------HHHHHHHHh
Confidence            2 1222333444444433332  24689999999999999999999999999999999986543       22333 445


Q ss_pred             HhCCcEEEcCceEEEEEecCCCc-----EEEEEeCCCcEEecCEEEEccCCcCCChhhhhcCCccc-CCCEEEc-CCCCC
Q 014997          186 QQNGVKFVKGASIKNLEAGSDGR-----VAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVD-GQFRT  258 (414)
Q Consensus       186 ~~~gv~i~~~~~v~~i~~~~~~~-----~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~-~g~i~vd-~~~~t  258 (414)
                      +.-+|+++.++.+.+...+ .+.     +..+.+.+.+.++.+-+++++|..|++.+++. .++.+ +|.|++- ..-.|
T Consensus       204 ~npnI~v~~nt~~~ea~gd-~~~l~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l~g-qve~d~~GYi~t~pgts~T  281 (322)
T KOG0404|consen  204 KNPNIEVLYNTVAVEALGD-GKLLNGLRIKNVKTGEETDLPVSGLFFAIGHSPATKFLKG-QVELDEDGYIVTRPGTSLT  281 (322)
T ss_pred             cCCCeEEEechhhhhhccC-cccccceEEEecccCcccccccceeEEEecCCchhhHhcC-ceeeccCceEEeccCcccc
Confidence            5668999999887776533 222     23344444467999999999999999999987 55554 6788887 46779


Q ss_pred             CCCcEEEEcccccc
Q 014997          259 RMPGIFAIGDVAAF  272 (414)
Q Consensus       259 ~~~~IyA~GD~a~~  272 (414)
                      |+|++||+||+...
T Consensus       282 svpG~FAAGDVqD~  295 (322)
T KOG0404|consen  282 SVPGVFAAGDVQDK  295 (322)
T ss_pred             cccceeeccccchH
Confidence            99999999999764

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=3.6e-22  Score=182.54  Aligned_cols=227  Identities=21%  Similarity=0.310  Sum_probs=179.0

Q ss_pred             CCCCCCCCccccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCC-----CCEEEeCCCcEEecCeEEEccCCCCCCCCCCC
Q 014997           33 KPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE-----KQTLITNSGKLLKYGSLIVATGCTASRFPEKI  107 (414)
Q Consensus        33 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~-----~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~  107 (414)
                      .++++.+.|...|..+.....+..+++.|+++-..+++++.+.     -.+|++++|-.+..+.+|||||++.+.+ .+|
T Consensus       253 ~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~-nvP  331 (520)
T COG3634         253 GIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNM-NVP  331 (520)
T ss_pred             chhheeccccccchHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcchhcC-CCC
Confidence            3556666677777777777788889999999887888888874     2489999999999999999999997654 456


Q ss_pred             CCC---CCCEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHH
Q 014997          108 GGY---LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQL  184 (414)
Q Consensus       108 g~~---~~gv~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~  184 (414)
                      |.+   ..|+.++.      .+..-+.++|+|+|||||++|+|.|..|+..-..||+++-.+.+-       ..+.+++.
T Consensus       332 GE~e~rnKGVayCP------HCDGPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLk-------AD~VLq~k  398 (520)
T COG3634         332 GEDEYRNKGVAYCP------HCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELK-------ADAVLQDK  398 (520)
T ss_pred             chHHHhhCCeeeCC------CCCCcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhh-------hHHHHHHH
Confidence            643   46777754      333446689999999999999999999998888899998766432       23345566


Q ss_pred             HHh-CCcEEEcCceEEEEEecCCCcEEEEEeCC---C--cEEecCEEEEccCCcCCChhhhhcCCcc-cCCCEEEcCCCC
Q 014997          185 YQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLED---G--STIDADTIVIGIGAKPTVSPFERVGLNS-SVGGIQVDGQFR  257 (414)
Q Consensus       185 l~~-~gv~i~~~~~v~~i~~~~~~~~~~v~~~~---g--~~i~~D~vi~a~G~~p~~~~l~~~gl~~-~~g~i~vd~~~~  257 (414)
                      ++. .+++++++..-+++..+ ..++..+...+   |  +.++-+-|++-+|..||++||+.. ++. .+|-|.||.+..
T Consensus       399 l~sl~Nv~ii~na~Ttei~Gd-g~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~WLkg~-vel~~rGEIivD~~g~  476 (520)
T COG3634         399 LRSLPNVTIITNAQTTEVKGD-GDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGA-VELNRRGEIIVDARGE  476 (520)
T ss_pred             HhcCCCcEEEecceeeEEecC-CceecceEEEeccCCceeEEEeeeeEEEEecccChhHhhch-hhcCcCccEEEecCCC
Confidence            665 48999999999999854 34455555433   3  368889999999999999999987 554 367899999999


Q ss_pred             CCCCcEEEEccccccCCc
Q 014997          258 TRMPGIFAIGDVAAFPLK  275 (414)
Q Consensus       258 t~~~~IyA~GD~a~~~~~  275 (414)
                      ||.|+|||+|||...+..
T Consensus       477 TsvpGvFAAGD~T~~~yK  494 (520)
T COG3634         477 TNVPGVFAAGDCTTVPYK  494 (520)
T ss_pred             cCCCceeecCcccCCccc
Confidence            999999999999987664

>PLN02852 ferredoxin-NADP+ reductase

Probab=99.86  E-value=1.4e-20  Score=187.77  Aligned_cols=233  Identities=17%  Similarity=0.238  Sum_probs=152.7

Q ss_pred             hHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHH-------HHHH
Q 014997           54 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVAD-------ADAL  126 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~-------~~~~  126 (414)
                      ..+...+++++.+.++      ++.+.+++-. ..||+||||||+.+.+.+.++|.+.+|++...++..       +..+
T Consensus        87 ~~~~~~~v~~~~nv~v------g~dvtl~~L~-~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a~~fl~~~ng~~d~~~~  159 (491)
T PLN02852         87 RVATDDRVSFFGNVTL------GRDVSLSELR-DLYHVVVLAYGAESDRRLGIPGEDLPGVLSAREFVWWYNGHPDCVHL  159 (491)
T ss_pred             HHHHHCCeEEEcCEEE------CccccHHHHh-hhCCEEEEecCCCCCCCCCCCCCCCCCeEEHHHHHHHhhcchhhhhh
Confidence            3456678998876443      3345554443 479999999999864345568888899988765421       1112


Q ss_pred             HHhhcCCCeEEEECCChHHHHHHHHHHhC--------------------CC-cEEEEeeCCcccccccCHHH--------
Q 014997          127 ISSLEKAKKVVVVGGGYIGMEVAAAAVGW--------------------KL-DTTIIFPENHLLQRLFTPSL--------  177 (414)
Q Consensus       127 ~~~~~~~~~vvVvGgG~~g~e~A~~l~~~--------------------g~-~Vtlv~~~~~~l~~~~~~~~--------  177 (414)
                      ...+..+++|+|||+|++|+++|..|.+.                    +. +|+++.|+...-..+..+++        
T Consensus       160 ~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l~~  239 (491)
T PLN02852        160 PPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKN  239 (491)
T ss_pred             hhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhccCC
Confidence            22234689999999999999999998765                    54 59999987532111111111        


Q ss_pred             -----------------------------HHHHHHHHHh---------CCcEEEcCceEEEEEec--CCCcEEEEEeC--
Q 014997          178 -----------------------------AQRYEQLYQQ---------NGVKFVKGASIKNLEAG--SDGRVAAVKLE--  215 (414)
Q Consensus       178 -----------------------------~~~~~~~l~~---------~gv~i~~~~~v~~i~~~--~~~~~~~v~~~--  215 (414)
                                                   .+.+.+...+         ++|.|++.....+|..+  +++++..+++.  
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~  319 (491)
T PLN02852        240 VRVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERT  319 (491)
T ss_pred             CceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEe
Confidence                                         1112222222         57999999999999743  23566666552  


Q ss_pred             ---------------CC--cEEecCEEEEccCCc--CCChh-hh-hcCCcc-cCCCEEEcCCCCCCCCcEEEEccccccC
Q 014997          216 ---------------DG--STIDADTIVIGIGAK--PTVSP-FE-RVGLNS-SVGGIQVDGQFRTRMPGIFAIGDVAAFP  273 (414)
Q Consensus       216 ---------------~g--~~i~~D~vi~a~G~~--p~~~~-l~-~~gl~~-~~g~i~vd~~~~t~~~~IyA~GD~a~~~  273 (414)
                                     +|  +.++||.||.++|++  |...+ +. ..++.. .+|+|.+|+.++|+.|+|||+|||...+
T Consensus       320 ~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~~n~~G~V~~d~~~~T~ipGvyAaGDi~~Gp  399 (491)
T PLN02852        320 VLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDHKRGVVPNVHGRVLSSASGADTEPGLYVVGWLKRGP  399 (491)
T ss_pred             ecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCccccCcCeeECCCceEEeCCCCccCCCCEEEeeeEecCC
Confidence                           23  259999999999998  55443 32 234443 4688999988899999999999999865


Q ss_pred             CccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997          274 LKMYDRTARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       274 ~~~~~~~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                      ...         +..++..|..++.+|+.
T Consensus       400 ~gv---------I~t~~~dA~~ta~~i~~  419 (491)
T PLN02852        400 TGI---------IGTNLTCAEETVASIAE  419 (491)
T ss_pred             CCe---------eeecHhhHHHHHHHHHH
Confidence            532         22355566666666653

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=99.85  E-value=7.9e-20  Score=198.60  Aligned_cols=222  Identities=14%  Similarity=0.127  Sum_probs=159.9

Q ss_pred             CHhHHHHc-CCeEEcCCcEEEEeCCCCEEEeC----------C----C--cEEecCeEEEccCCCCCCCCCCCCCCCCCE
Q 014997           52 TPEWYKEK-GIEMIYQDPVTSIDIEKQTLITN----------S----G--KLLKYGSLIVATGCTASRFPEKIGGYLPGV  114 (414)
Q Consensus        52 ~~~~~~~~-~i~~~~~~~V~~id~~~~~V~~~----------~----g--~~~~yd~LviAtG~~~~~~~~~~g~~~~gv  114 (414)
                      ..+.+++. +++++.+++|..++.......++          +    +  .++.||+||||||+.++. ++++|.+.+++
T Consensus       221 ~~~~l~~~~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~-~pipG~~~pgV  299 (985)
T TIGR01372       221 TVAELTAMPEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERP-LVFANNDRPGV  299 (985)
T ss_pred             HHHHHhcCCCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcC-CCCCCCCCCCc
Confidence            33445555 59999999999887643221110          1    1  158999999999999874 55688888999


Q ss_pred             EEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCC-cEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEE
Q 014997          115 HYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV  193 (414)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~  193 (414)
                      ++.......... .....+++|+|||+|++|+|+|..|++.|. .|+++++.+.+.         ..+.+.+++.||+++
T Consensus       300 ~~~~~~~~~l~~-~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~~---------~~l~~~L~~~GV~i~  369 (985)
T TIGR01372       300 MLAGAARTYLNR-YGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADVS---------PEARAEARELGIEVL  369 (985)
T ss_pred             EEchHHHHHHHh-hCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcchh---------HHHHHHHHHcCCEEE
Confidence            886544332211 112368999999999999999999999995 477887665332         235567889999999


Q ss_pred             cCceEEEEEecCCCcEEEEEeC----CCcEEecCEEEEccCCcCCChhhhhcCCccc--C--CCEEEcCCCCCCCCcEEE
Q 014997          194 KGASIKNLEAGSDGRVAAVKLE----DGSTIDADTIVIGIGAKPTVSPFERVGLNSS--V--GGIQVDGQFRTRMPGIFA  265 (414)
Q Consensus       194 ~~~~v~~i~~~~~~~~~~v~~~----~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~--~--g~i~vd~~~~t~~~~IyA  265 (414)
                      +++.++++..  ++.+..|++.    ++++++||.|+++.|.+||++++..++....  .  +...    -.|+.|+||+
T Consensus       370 ~~~~v~~i~g--~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~~~~~~~~~~~----~~t~v~gVya  443 (985)
T TIGR01372       370 TGHVVAATEG--GKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQRGGKLAWDAAIAAFL----PGDAVQGCIL  443 (985)
T ss_pred             cCCeEEEEec--CCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHhcCCCeeeccccCcee----cCCCCCCeEE
Confidence            9999999974  3444455543    4568999999999999999999888775532  1  1111    1378999999


Q ss_pred             EccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 014997          266 IGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  301 (414)
Q Consensus       266 ~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~  301 (414)
                      ||||+...           ....|..+|..||..++
T Consensus       444 aGD~~g~~-----------~~~~A~~eG~~Aa~~i~  468 (985)
T TIGR01372       444 AGAANGLF-----------GLAAALADGAAAGAAAA  468 (985)
T ss_pred             eeccCCcc-----------CHHHHHHHHHHHHHHHH
Confidence            99998643           34568888888887775

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=99.84  E-value=1.4e-19  Score=186.49  Aligned_cols=226  Identities=25%  Similarity=0.301  Sum_probs=155.2

Q ss_pred             CHhHHHHcCCeEEcCCcE-EEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhh
Q 014997           52 TPEWYKEKGIEMIYQDPV-TSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL  130 (414)
Q Consensus        52 ~~~~~~~~~i~~~~~~~V-~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~  130 (414)
                      ..+++++.|++++.++.+ ..+..+.    +    ...||++|+|||+.......+++....++...-.+..........
T Consensus       193 ~l~~~~~~Gv~~~~~~~~~~~~~~~~----~----~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~~l~~~~~~~~~  264 (564)
T PRK12771        193 EIQRILDLGVEVRLGVRVGEDITLEQ----L----EGEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAVGEGEPP  264 (564)
T ss_pred             HHHHHHHCCCEEEeCCEECCcCCHHH----H----HhhCCEEEEeeCCCCCCcCCCCCCccCCcEEHHHHHHHhhccCCc
Confidence            346678899999987655 2221111    1    135999999999975433344555556655432221111101112


Q ss_pred             cCCCeEEEECCChHHHHHHHHHHhCC-CcEEEEeeCCcc-cccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCc
Q 014997          131 EKAKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR  208 (414)
Q Consensus       131 ~~~~~vvVvGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~~-l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~  208 (414)
                      ..+++++|+|+|.+++++|..+.+++ .+|+++.+.+.. ++ ...    ..+. ...+.||+++++..+.++..++++.
T Consensus       265 ~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~-~~~----~~~~-~a~~~GVki~~~~~~~~i~~~~~~~  338 (564)
T PRK12771        265 FLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMP-AHD----EEIE-EALREGVEINWLRTPVEIEGDENGA  338 (564)
T ss_pred             CCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCC-CCH----HHHH-HHHHcCCEEEecCCcEEEEcCCCCE
Confidence            35789999999999999999999888 679999887642 22 111    1222 3456899999999999997554443


Q ss_pred             E----EEEEe----CC-------C--cEEecCEEEEccCCcCCChhhhh-cCCcccCCCEEEcC-CCCCCCCcEEEEccc
Q 014997          209 V----AAVKL----ED-------G--STIDADTIVIGIGAKPTVSPFER-VGLNSSVGGIQVDG-QFRTRMPGIFAIGDV  269 (414)
Q Consensus       209 ~----~~v~~----~~-------g--~~i~~D~vi~a~G~~p~~~~l~~-~gl~~~~g~i~vd~-~~~t~~~~IyA~GD~  269 (414)
                      +    ..+.+    .+       |  .++++|.||+++|..|+.+++++ .++..++|+|.||+ +++|+.|+|||+|||
T Consensus       339 ~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~~~~gl~~~~G~i~vd~~~~~ts~~~Vfa~GD~  418 (564)
T PRK12771        339 TGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGLESVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDM  418 (564)
T ss_pred             EEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhhhhhccCcccCCCCEEeCCCCccCCCCCEEeccCc
Confidence            2    12222    12       2  37999999999999999888875 56765578899998 788999999999999


Q ss_pred             cccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 014997          270 AAFPLKMYDRTARVEHVDHARQSAQHCIKALL  301 (414)
Q Consensus       270 a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~  301 (414)
                      +..+.          .+..|..+|+.||.+|.
T Consensus       419 ~~g~~----------~v~~Av~~G~~aA~~i~  440 (564)
T PRK12771        419 VPGPR----------TVTTAIGHGKKAARNID  440 (564)
T ss_pred             CCCch----------HHHHHHHHHHHHHHHHH
Confidence            86432          46678999999998875

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=99.82  E-value=4.4e-20  Score=167.17  Aligned_cols=272  Identities=19%  Similarity=0.256  Sum_probs=189.0

Q ss_pred             CCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCCCEEEe
Q 014997            2 ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLIT   81 (414)
Q Consensus         2 ~~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~   81 (414)
                      +.|+|.||..+.++.|+ |.++  +..+..+..+.-            .+....+...+..++. ++|.+.+|++++|.+
T Consensus        63 ~~g~vgIvep~e~HyYQ-PgfT--LvGgGl~~l~~s------------rr~~a~liP~~a~wi~-ekv~~f~P~~N~v~t  126 (446)
T KOG3851|consen   63 GSGSVGIVEPAEDHYYQ-PGFT--LVGGGLKSLDSS------------RRKQASLIPKGATWIK-EKVKEFNPDKNTVVT  126 (446)
T ss_pred             CCCceEEecchhhcccC-cceE--Eeccchhhhhhc------------cCcccccccCCcHHHH-HHHHhcCCCcCeEEc
Confidence            56899999999888887 8766  444432222211            3444455566777776 699999999999999


Q ss_pred             CCCcEEecCeEEEccCCCCCCCCCCCC----CCCCCEEEecCHHHHHHHHHhh---cCCCeEEEECCChHHH--------
Q 014997           82 NSGKLLKYGSLIVATGCTASRFPEKIG----GYLPGVHYIRDVADADALISSL---EKAKKVVVVGGGYIGM--------  146 (414)
Q Consensus        82 ~~g~~~~yd~LviAtG~~~~~~~~~~g----~~~~gv~~~~~~~~~~~~~~~~---~~~~~vvVvGgG~~g~--------  146 (414)
                      ++|++|.||+||||+|...+ ...+.|    .+.|+|.+..+....+.....+   ++|.-+.-.-++++-|        
T Consensus       127 ~gg~eIsYdylviA~Giql~-y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~fk~GNAIfTfPntpiKCAGAPQKi~  205 (446)
T KOG3851|consen  127 RGGEEISYDYLVIAMGIQLD-YGKIKGLVEALDTPGVCSNYSPKYVDKVYKELMNFKKGNAIFTFPNTPIKCAGAPQKIM  205 (446)
T ss_pred             cCCcEEeeeeEeeeeeceec-cchhcChHhhccCCCcccccChHHHHHHHHHHHhccCCceEEecCCCccccCCCchhhh
Confidence            99999999999999998754 344444    4568888888776666654443   4555555555555433        


Q ss_pred             HHHH-HHHhCCCc--EEEEeeCCcccccccC-HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCC-C--cE
Q 014997          147 EVAA-AAVGWKLD--TTIIFPENHLLQRLFT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED-G--ST  219 (414)
Q Consensus       147 e~A~-~l~~~g~~--Vtlv~~~~~~l~~~~~-~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~-g--~~  219 (414)
                      -++. .++++|.+  +.++..-  -|+..|+ +..++.+++..++++|++.......++..++...+.. .+++ |  ++
T Consensus       206 yise~y~Rk~gvRd~a~iiy~T--sl~~iFgVk~Y~~AL~k~~~~rni~vn~krnLiEV~~~~~~AvFe-~L~kPG~t~e  282 (446)
T KOG3851|consen  206 YISESYFRKRGVRDNANIIYNT--SLPTIFGVKHYADALEKVIQERNITVNYKRNLIEVRTNDRKAVFE-NLDKPGVTEE  282 (446)
T ss_pred             hhhHHHHHHhCccccccEEEec--CccceecHHHHHHHHHHHHHhcceEeeeccceEEEeccchhhHHH-hcCCCCceeE
Confidence            3333 35666643  4444332  2333444 5778889999999999999988888887543221111 1222 4  47


Q ss_pred             EecCEEEEccCCcCCChhhhhcCCcccCCCEEEcC-CCCC-CCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHH
Q 014997          220 IDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDG-QFRT-RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCI  297 (414)
Q Consensus       220 i~~D~vi~a~G~~p~~~~l~~~gl~~~~g~i~vd~-~~~t-~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa  297 (414)
                      ++++++-+.+..++. +.++++.+.+..|++.||+ .+|. ..||||++|||.+.|+..        +...+..|...+-
T Consensus       283 i~yslLHv~Ppms~p-e~l~~s~~adktGfvdVD~~TlQs~kypNVFgiGDc~n~PnsK--------TaAAvaaq~~vv~  353 (446)
T KOG3851|consen  283 IEYSLLHVTPPMSTP-EVLANSDLADKTGFVDVDQSTLQSKKYPNVFGIGDCMNLPNSK--------TAAAVAAQSPVVD  353 (446)
T ss_pred             EeeeeeeccCCCCCh-hhhhcCcccCcccceecChhhhccccCCCceeeccccCCCchh--------hHHHHHhcCchhh
Confidence            999999999999886 7888888887779999996 6775 899999999999988754        3333445666666


Q ss_pred             HHHhc
Q 014997          298 KALLS  302 (414)
Q Consensus       298 ~~i~~  302 (414)
                      +|+..
T Consensus       354 ~nl~~  358 (446)
T KOG3851|consen  354 KNLTQ  358 (446)
T ss_pred             hhHHH
Confidence            77653

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=99.73  E-value=3.3e-17  Score=144.82  Aligned_cols=200  Identities=27%  Similarity=0.357  Sum_probs=146.3

Q ss_pred             cEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHH
Q 014997           68 PVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGME  147 (414)
Q Consensus        68 ~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e  147 (414)
                      .|..++...+.+++++|.++.|++|++|||++|...-  .+ --+.+..+|+.+.++.++..+.+.|.|.|+|.|-+++|
T Consensus        72 ~v~~~~s~ehci~t~~g~~~ky~kKOG~tg~kPklq~--E~-~n~~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~E  148 (334)
T KOG2755|consen   72 DVVTWDSSEHCIHTQNGEKLKYFKLCLCTGYKPKLQV--EG-INPKIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAME  148 (334)
T ss_pred             hhhhhccccceEEecCCceeeEEEEEEecCCCcceee--cC-CCceEEEEecCcHHHHHHHHHhhcceEEEEecCchhHH
Confidence            3777888889999999999999999999999987432  22 24667778888888888888999999999999999999


Q ss_pred             HHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCC----cEE--------EcCce-----------------E
Q 014997          148 VAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNG----VKF--------VKGAS-----------------I  198 (414)
Q Consensus       148 ~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~g----v~i--------~~~~~-----------------v  198 (414)
                      ++..+..  .+|++....+.+...+++|.+.+.+...++..+    |.+        +++++                 .
T Consensus       149 l~yElk~--~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n~vg~algpDw~s~~dl  226 (334)
T KOG2755|consen  149 LTYELKI--LNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYIEAFPKCEENNVGPALGPDWHSQIDL  226 (334)
T ss_pred             HHHHhhc--ceeEEEecchhhhhcccCccHHHHhHhhhhcccccchhhhhhhhhhhhcCcccccCcccccCcchhhhccc
Confidence            9998864  679999999888888888888877766662111    111        11000                 0


Q ss_pred             EEEE-------------------ecCCCcEEEEEeCCC--cEEecCEEEEccCCcCCChhhhhcCCcc-cCCCEEEcCCC
Q 014997          199 KNLE-------------------AGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERVGLNS-SVGGIQVDGQF  256 (414)
Q Consensus       199 ~~i~-------------------~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~~l~~~gl~~-~~g~i~vd~~~  256 (414)
                      ..+.                   ..+.+.+......+|  ..+.||.+++++|..||.+++-...+.. +++++.||+.|
T Consensus       227 ~g~~eseer~l~~l~~~~~~~~d~~d~~sv~~~~~ek~~~~qlt~d~ivSatgvtpn~e~~~~~~lq~~edggikvdd~m  306 (334)
T KOG2755|consen  227 QGISESENRSLTYLRNCVITSTDTSDNLSVHYMDKEKMADNQLTCDFIVSATGVTPNSEWAMNKMLQITEDGGIKVDDAM  306 (334)
T ss_pred             ccchhhhhhhhHHhhhheeeeccchhhcccccccccccccceeeeeEEEeccccCcCceEEecChhhhccccCeeehhhc
Confidence            0000                   000000000000111  3688999999999999999765555543 57899999999


Q ss_pred             CCCCCcEEEEcccccc
Q 014997          257 RTRMPGIFAIGDVAAF  272 (414)
Q Consensus       257 ~t~~~~IyA~GD~a~~  272 (414)
                      +|+.|++||+||++..
T Consensus       307 ~tslpdvFa~gDvctt  322 (334)
T KOG2755|consen  307 ETSLPDVFAAGDVCTT  322 (334)
T ss_pred             cccccceeeecceecc
Confidence            9999999999999884

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.69  E-value=3.2e-16  Score=156.82  Aligned_cols=224  Identities=17%  Similarity=0.159  Sum_probs=145.4

Q ss_pred             CCCCCHhHHHHcCCe--EEcCCcEEEEeCCCC--EEEeCCC--c--EEecCeEEEccC--CCCCCCCCCCCC-CCCCE-E
Q 014997           48 GERQTPEWYKEKGIE--MIYQDPVTSIDIEKQ--TLITNSG--K--LLKYGSLIVATG--CTASRFPEKIGG-YLPGV-H  115 (414)
Q Consensus        48 ~~~~~~~~~~~~~i~--~~~~~~V~~id~~~~--~V~~~~g--~--~~~yd~LviAtG--~~~~~~~~~~g~-~~~gv-~  115 (414)
                      +.....+++++.++.  ++++++|+.|++.+.  .|++.++  .  +..||+||+|||  +.|+ .|.++|. ..+|. .
T Consensus       113 v~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VIvAtG~~~~P~-~P~ipG~~~f~G~~i  191 (461)
T PLN02172        113 VLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVVCNGHYTEPN-VAHIPGIKSWPGKQI  191 (461)
T ss_pred             HHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEEEeccCCCCCc-CCCCCCcccCCceEE
Confidence            333455666678888  889999999998654  5665432  2  467999999999  5565 4666664 24442 1


Q ss_pred             EecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcC
Q 014997          116 YIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG  195 (414)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~  195 (414)
                      +..++.+..     ..++|+|+|||+|.+|+|+|..|+..+.+|+++.|...+..  .         ..+......+..+
T Consensus       192 Hs~~yr~~~-----~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~~~~--~---------~~~~~~~~~v~~~  255 (461)
T PLN02172        192 HSHNYRVPD-----PFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASESDT--Y---------EKLPVPQNNLWMH  255 (461)
T ss_pred             EecccCCcc-----ccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeeccccc--c---------ccCcCCCCceEEC
Confidence            111121111     23789999999999999999999999999999998763311  0         0111122344555


Q ss_pred             ceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhcC-CcccCCCEE-EcCC-CCCC-CCcEEEEccccc
Q 014997          196 ASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG-LNSSVGGIQ-VDGQ-FRTR-MPGIFAIGDVAA  271 (414)
Q Consensus       196 ~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~g-l~~~~g~i~-vd~~-~~t~-~~~IyA~GD~a~  271 (414)
                      ..|..+..  ++   .|.+.||+.+++|.||+|||++++.++|...+ +..+++.+. .-++ +-.. .|+++.+|=+..
T Consensus       256 ~~I~~~~~--~g---~V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~~~~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~~  330 (461)
T PLN02172        256 SEIDTAHE--DG---SIVFKNGKVVYADTIVHCTGYKYHFPFLETNGYMRIDENRVEPLYKHVFPPALAPGLSFIGLPAM  330 (461)
T ss_pred             Ccccceec--CC---eEEECCCCCccCCEEEECCcCCccccccCcccceeeCCCcchhhHHhhcCCCCCCcEEEEecccc
Confidence            66666642  33   48899999999999999999999999886533 222222221 1111 1123 489999995422


Q ss_pred             cCCccCCcccccccHHHHHHHHHHHHHHHhcCC
Q 014997          272 FPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ  304 (414)
Q Consensus       272 ~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~~  304 (414)
                      .           ..+..+..||+.+|+-+.|..
T Consensus       331 ~-----------~~f~~~E~Qa~~~a~v~sG~~  352 (461)
T PLN02172        331 G-----------IQFVMFEIQSKWVAAVLSGRV  352 (461)
T ss_pred             c-----------cCchhHHHHHHHHHHHHcCCC
Confidence            1           134457789999998887643

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=99.59  E-value=5.3e-15  Score=146.42  Aligned_cols=236  Identities=26%  Similarity=0.288  Sum_probs=158.5

Q ss_pred             CCCCHhHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHH
Q 014997           49 ERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS  128 (414)
Q Consensus        49 ~~~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~  128 (414)
                      ..+..+.+++.|++|++++++=      +.++++.= .-.||++++|||+.-.+.-.++|.+.++++...++........
T Consensus       176 ~d~~i~~l~~~Gv~~~~~~~vG------~~it~~~L-~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~  248 (457)
T COG0493         176 LDRRLELLERSGVEFKLNVRVG------RDITLEEL-LKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEV  248 (457)
T ss_pred             HHHHHHHHHHcCeEEEEcceEC------CcCCHHHH-HHhhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHHHHH
Confidence            4566788899999999987652      22332221 2467999999998543344567877888876543332222111


Q ss_pred             hh---------cCCCeEEEECCChHHHHHHHHHHhCCC-cEEEEeeCCccccc-ccCHHHHHHHHHHHHhCCcEEEcCce
Q 014997          129 SL---------EKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHLLQR-LFTPSLAQRYEQLYQQNGVKFVKGAS  197 (414)
Q Consensus       129 ~~---------~~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~l~~-~~~~~~~~~~~~~l~~~gv~i~~~~~  197 (414)
                      ..         ..+++|+|||+|.++++|+....+.|+ +|+.+.+...--.. ..+........+...+.|+.+.+...
T Consensus       249 ~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~  328 (457)
T COG0493         249 LGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQ  328 (457)
T ss_pred             hcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEeccccccccCCcccccchhhhhhhhhhcCCcccccCC
Confidence            11         134999999999999999999999997 67776532211000 01122334455667788999998888


Q ss_pred             EEEEEecCCCcEEEEEeC-------------------CC--cEEecCEEEEccCCcCCChhh--hhcCCccc-CCCEEEc
Q 014997          198 IKNLEAGSDGRVAAVKLE-------------------DG--STIDADTIVIGIGAKPTVSPF--ERVGLNSS-VGGIQVD  253 (414)
Q Consensus       198 v~~i~~~~~~~~~~v~~~-------------------~g--~~i~~D~vi~a~G~~p~~~~l--~~~gl~~~-~g~i~vd  253 (414)
                      ..++..+++|++..+.+.                   .|  ..+++|+|+.++|+.++....  ...++..+ +|.+.+|
T Consensus       329 ~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~  408 (457)
T COG0493         329 PKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVD  408 (457)
T ss_pred             ceeEeecCCCcEeeeecccccccCcccccccccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecc
Confidence            888887778877655431                   12  368899999999998874432  22244443 6889999


Q ss_pred             CCC-CCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 014997          254 GQF-RTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  301 (414)
Q Consensus       254 ~~~-~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~  301 (414)
                      +.+ +|+.|++||.||+.....          .+..|..+|+.+|+.|.
T Consensus       409 ~~~~~ts~~~vfa~gD~~~g~~----------~vv~ai~eGr~aak~i~  447 (457)
T COG0493         409 ENLQQTSIPGVFAGGDAVRGAA----------LVVWAIAEGREAAKAID  447 (457)
T ss_pred             cccccccCCCeeeCceeccchh----------hhhhHHhhchHHHHhhh
Confidence            988 899999999999988533          23347778888777664

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.55  E-value=6.6e-14  Score=105.84  Aligned_cols=80  Identities=39%  Similarity=0.653  Sum_probs=74.8

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEe
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL  214 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~  214 (414)
                      +++|||||++|+|+|..|+++|.+||++++.+.++ +.+++++...+.+.+++.||++++++.+++++.++++ +. |++
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~-~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~-V~~   77 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL-PGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VE-VTL   77 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS-TTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EE-EEE
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh-hhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EE-EEE
Confidence            68999999999999999999999999999999999 5799999999999999999999999999999988777 65 888


Q ss_pred             CCC
Q 014997          215 EDG  217 (414)
Q Consensus       215 ~~g  217 (414)
                      +||
T Consensus        78 ~~g   80 (80)
T PF00070_consen   78 EDG   80 (80)
T ss_dssp             ETS
T ss_pred             ecC
Confidence            876

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.52  E-value=4.6e-14  Score=126.10  Aligned_cols=139  Identities=26%  Similarity=0.418  Sum_probs=98.5

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc--cccCH-----------HHH--H--HHHHHHHhCCcEEEcCce
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--RLFTP-----------SLA--Q--RYEQLYQQNGVKFVKGAS  197 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~--~~~~~-----------~~~--~--~~~~~l~~~gv~i~~~~~  197 (414)
                      +|+|||||+.|+.+|..|++.+.+|+++++.+....  ..+..           ...  .  .+.+.+...+++++.+.+
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   80 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK   80 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence            589999999999999999999999999977653210  00100           000  0  233344678999999999


Q ss_pred             EEEEEecCCC------cEEEEEeCCCcEEecCEEEEccCCcCCChh----------------------------------
Q 014997          198 IKNLEAGSDG------RVAAVKLEDGSTIDADTIVIGIGAKPTVSP----------------------------------  237 (414)
Q Consensus       198 v~~i~~~~~~------~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~----------------------------------  237 (414)
                      +.++......      .+......++.++.+|.+|+|+|..|+...                                  
T Consensus        81 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~  160 (201)
T PF07992_consen   81 VVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFLELLESPKRVAVVGT  160 (201)
T ss_dssp             EEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHHTHSSTTSEEEEEST
T ss_pred             cccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecCCCcccccccccccccccccccccccccccccc
Confidence            9999765331      112224456678999999999998854210                                  


Q ss_pred             --h-hhcCCcc-cCCCEEEcCCCCCCCCcEEEEccccccC
Q 014997          238 --F-ERVGLNS-SVGGIQVDGQFRTRMPGIFAIGDVAAFP  273 (414)
Q Consensus       238 --l-~~~gl~~-~~g~i~vd~~~~t~~~~IyA~GD~a~~~  273 (414)
                        | +..+++. ++|++.||+++||+.|||||+|||+..+
T Consensus       161 ~~l~~~~~~~~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~  200 (201)
T PF07992_consen  161 EFLAEKLGVELDENGFIKVDENLQTSVPGIYAAGDCAGIY  200 (201)
T ss_dssp             TTSTHHTTSTBTTTSSBEEBTTSBBSSTTEEE-GGGBEES
T ss_pred             cccccccccccccccccccccccccccccccccccccccC
Confidence              1 3445665 3678999999999999999999999864

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=99.50  E-value=1.5e-13  Score=139.47  Aligned_cols=246  Identities=22%  Similarity=0.290  Sum_probs=127.8

Q ss_pred             CCCCCCCccccCCCCCCCCHhHHHHcCC--eEEcCCcEEEEeCCC-------CEEEeCC-Cc--EEecCeEEEccCCCCC
Q 014997           34 PARLPGFHTCVGSGGERQTPEWYKEKGI--EMIYQDPVTSIDIEK-------QTLITNS-GK--LLKYGSLIVATGCTAS  101 (414)
Q Consensus        34 ~~~l~~~~~~~g~~~~~~~~~~~~~~~i--~~~~~~~V~~id~~~-------~~V~~~~-g~--~~~yd~LviAtG~~~~  101 (414)
                      ++++|.|++.  .++.....+++++.++  .++++++|+++....       ..|++++ |+  +-.||+||+|||....
T Consensus        74 p~~~p~f~~~--~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~  151 (531)
T PF00743_consen   74 PEDYPDFPSH--SEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSK  151 (531)
T ss_dssp             CCCCSSSEBH--HHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSC
T ss_pred             CCCCCCCCCH--HHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCC
Confidence            3444544432  2233344555666776  488999999997532       3676654 42  4579999999997532


Q ss_pred             -CCCC--CCCCC-CCCE-EEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc-cccccc--
Q 014997          102 -RFPE--KIGGY-LPGV-HYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH-LLQRLF--  173 (414)
Q Consensus       102 -~~~~--~~g~~-~~gv-~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~-~l~~~~--  173 (414)
                       .+|.  ++|.+ ++|- .+.+++.+.     ..-++|+|+|||+|.+|+++|..|++...+|++..|... ++++..  
T Consensus       152 P~~P~~~~~G~e~F~G~i~HS~~yr~~-----~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~  226 (531)
T PF00743_consen  152 PNIPEPSFPGLEKFKGEIIHSKDYRDP-----EPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDN  226 (531)
T ss_dssp             ESB-----CTGGGHCSEEEEGGG--TG-----GGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC------------
T ss_pred             CCCChhhhhhhhcCCeeEEccccCcCh-----hhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecccccccccccc
Confidence             1232  34422 3342 232222221     224789999999999999999999999999998887632 222211  


Q ss_pred             --------------------CHHHHHHHH-HH--------------------------------HHhCCcEEEcCceEEE
Q 014997          174 --------------------TPSLAQRYE-QL--------------------------------YQQNGVKFVKGASIKN  200 (414)
Q Consensus       174 --------------------~~~~~~~~~-~~--------------------------------l~~~gv~i~~~~~v~~  200 (414)
                                          +..+.+.+. +.                                +....|++.  ..|.+
T Consensus       227 G~P~D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk--~~I~~  304 (531)
T PF00743_consen  227 GYPFDMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVK--PDIKR  304 (531)
T ss_dssp             ------------------------------------------------------------------------E--E-EEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccc
Confidence                                111111110 00                                111112222  12334


Q ss_pred             EEecCCCcEEEEEeCCCcEE-ecCEEEEccCCcCCChhhhhcCCcccCCCEEEcCCC---CCCCCcEEEEccccccCCcc
Q 014997          201 LEAGSDGRVAAVKLEDGSTI-DADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQF---RTRMPGIFAIGDVAAFPLKM  276 (414)
Q Consensus       201 i~~~~~~~~~~v~~~~g~~i-~~D~vi~a~G~~p~~~~l~~~gl~~~~g~i~vd~~~---~t~~~~IyA~GD~a~~~~~~  276 (414)
                      +..+      .|.+.||+++ ++|.||+|||++...++|.+.-+...++.+..-.++   ....|++..+|=+...    
T Consensus       305 ~~~~------~v~F~DGs~~e~vD~II~~TGY~~~fpFL~~~~~~~~~~~~~LYk~vfp~~~~~ptLafIG~~~~~----  374 (531)
T PF00743_consen  305 FTEN------SVIFEDGSTEEDVDVIIFCTGYKFSFPFLDESLIKVDDNRVRLYKHVFPPNLDHPTLAFIGLVQPF----  374 (531)
T ss_dssp             E-SS------EEEETTSEEEEE-SEEEE---EE---TTB-TTTT-S-SSSSSEETTTEETETTSTTEEESS-SBSS----
T ss_pred             cccc------cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----
Confidence            4321      6789999875 699999999999998888776554433333332322   1245889999965321    


Q ss_pred             CCcccccccHHHHHHHHHHHHHHHhcCC
Q 014997          277 YDRTARVEHVDHARQSAQHCIKALLSAQ  304 (414)
Q Consensus       277 ~~~~~~~~~~~~A~~~a~~aa~~i~~~~  304 (414)
                       |.     .+..+..||+.+|+-+.|..
T Consensus       375 -g~-----~fp~~ElQArw~a~v~sG~~  396 (531)
T PF00743_consen  375 -GS-----IFPIFELQARWAARVFSGRV  396 (531)
T ss_dssp             -S------HHHHHHHHHHHHHHHHTTSS
T ss_pred             -cc-----cccccccccccccccccccc
Confidence             11     34457889999998887643

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=99.43  E-value=6.9e-12  Score=132.12  Aligned_cols=182  Identities=15%  Similarity=0.129  Sum_probs=115.8

Q ss_pred             EEecCeEEEccCC-CCCCCCCCCCCCCCCEEEecCHHHHHHHHHh--------hcCCCeEEEECCChHHHHHHHHHHh--
Q 014997           86 LLKYGSLIVATGC-TASRFPEKIGGYLPGVHYIRDVADADALISS--------LEKAKKVVVVGGGYIGMEVAAAAVG--  154 (414)
Q Consensus        86 ~~~yd~LviAtG~-~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~--------~~~~~~vvVvGgG~~g~e~A~~l~~--  154 (414)
                      ...||+|+||||+ .++. +.++|.+.+++++..++.........        +..+++|+|||||++|+|+|.....  
T Consensus       495 ~~gyDAV~IATGA~kpr~-L~IPGeda~GV~sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~  573 (1028)
T PRK06567        495 DLGFDHIAFCIGAGQPKV-LDIENFEAKGVKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYY  573 (1028)
T ss_pred             hcCCCEEEEeCCCCCCCC-CCCCCccCCCeEEHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhc
Confidence            4679999999999 5764 55688777888875443222111110        1236899999999999999984332  


Q ss_pred             -------------------------------------------------CCCcEEEEeeCCcccccccCHHHHHHHHHHH
Q 014997          155 -------------------------------------------------WKLDTTIIFPENHLLQRLFTPSLAQRYEQLY  185 (414)
Q Consensus       155 -------------------------------------------------~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l  185 (414)
                                                                       .|. |+++.|...--.... +.-.+.+.. .
T Consensus       574 ~l~ve~~l~~~~~~~~~~~d~eia~~f~~h~r~~g~~~~~~~v~~l~~~~G~-VtIvYRr~~~empA~-~~~~eEv~~-A  650 (1028)
T PRK06567        574 KKQVEEFAKDYIEKDLTEEDKEIAEEFIAHAKLFKEAKNNEELRKVFNKLGG-ATVYYRGRLQDSPAY-KLNHEELIY-A  650 (1028)
T ss_pred             cchhhHHHHhhhhhhcccccHHHHHHHHHHHHhhcchhccchhhhhhccCCc-eEEEecCChhhCCCC-CCCHHHHHH-H
Confidence                                                             222 888887653211111 001223333 4


Q ss_pred             HhCCcEEEcCceEEEEEecCCCcEEEEEeC--------------C----------------CcEEecCEEEEccCCcCCC
Q 014997          186 QQNGVKFVKGASIKNLEAGSDGRVAAVKLE--------------D----------------GSTIDADTIVIGIGAKPTV  235 (414)
Q Consensus       186 ~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~--------------~----------------g~~i~~D~vi~a~G~~p~~  235 (414)
                      .+.||+|+.+....++..+++|++..+++.              +                ..+++||.||+|+|..||+
T Consensus       651 ~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~  730 (1028)
T PRK06567        651 LALGVDFKENMQPLRINVDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNT  730 (1028)
T ss_pred             HHcCcEEEecCCcEEEEecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecccCCcc
Confidence            567999999999999986666777655442              1                1469999999999999997


Q ss_pred             hhhhhcCCcccCCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 014997          236 SPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  301 (414)
Q Consensus       236 ~~l~~~gl~~~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~  301 (414)
                      .+..            .+..+-++.+++|+-                  ++-.|+.+|+.++.+|.
T Consensus       731 ~~~~------------~~~s~~~d~~~~f~G------------------tvv~A~as~k~~~~~i~  766 (1028)
T PRK06567        731 QFDE------------DKYSYFGDCNPKYSG------------------SVVKALASSKEGYDAIN  766 (1028)
T ss_pred             cccc------------cccccccCCCCcccc------------------HHHHHHHHHHhHHHHHH
Confidence            6630            011222344555543                  33457778888777773

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=99.38  E-value=1.7e-12  Score=134.03  Aligned_cols=233  Identities=21%  Similarity=0.328  Sum_probs=136.3

Q ss_pred             CCCHhHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCC-CCCCCCCCCCCCCCEEEecCHHHHH--HH
Q 014997           50 RQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADAD--AL  126 (414)
Q Consensus        50 ~~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~-~~~~~~~~g~~~~gv~~~~~~~~~~--~~  126 (414)
                      .|..+.+.+.||+|+.++++      ++.|.+ |+-.-.+|.+|+|||+. |+.+| ++|.+..|++....+.+..  .+
T Consensus      1839 ~rrv~ll~~egi~f~tn~ei------gk~vs~-d~l~~~~daiv~a~gst~prdlp-v~grd~kgv~fame~l~~ntk~l 1910 (2142)
T KOG0399|consen 1839 QRRVDLLEQEGIRFVTNTEI------GKHVSL-DELKKENDAIVLATGSTTPRDLP-VPGRDLKGVHFAMEFLEKNTKSL 1910 (2142)
T ss_pred             HHHHHHHHhhCceEEeeccc------cccccH-HHHhhccCeEEEEeCCCCCcCCC-CCCccccccHHHHHHHHHhHHhh
Confidence            34556778889999988765      333433 33345889999999985 55554 6888899997654333221  11


Q ss_pred             HHh-------hcCCCeEEEECCChHHHHHHHHHHhCCCcEEE-EeeCC---------cccc---cccCHHHHHHHHHHHH
Q 014997          127 ISS-------LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTI-IFPEN---------HLLQ---RLFTPSLAQRYEQLYQ  186 (414)
Q Consensus       127 ~~~-------~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtl-v~~~~---------~~l~---~~~~~~~~~~~~~~l~  186 (414)
                      ...       -.++|+|+|||||.+|-+|...-.++|++... ++--+         .+.|   +.|--+....-.+.+ 
T Consensus      1911 ld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~npwpqwprvfrvdygh~e~~~~- 1989 (2142)
T KOG0399|consen 1911 LDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFELLPQPPPERAPDNPWPQWPRVFRVDYGHAEAKEH- 1989 (2142)
T ss_pred             hccccccceeccCCCeEEEECCCCccccccccchhhccceecceeecCCCCcccCCCCCCccCceEEEeecchHHHHHH-
Confidence            110       12689999999999999999888888865332 22111         1111   111112222211111 


Q ss_pred             hCCcEEEcCc-eEEEEEecCCCcEEEE------------------EeCC-CcEEecCEEEEccCCc-CCChhhhhcCCcc
Q 014997          187 QNGVKFVKGA-SIKNLEAGSDGRVAAV------------------KLED-GSTIDADTIVIGIGAK-PTVSPFERVGLNS  245 (414)
Q Consensus       187 ~~gv~i~~~~-~v~~i~~~~~~~~~~v------------------~~~~-g~~i~~D~vi~a~G~~-p~~~~l~~~gl~~  245 (414)
                       .|-+.++.+ --+++..+++|.++.+                  +..+ .+.++||++|++.|+. |.....++.+++.
T Consensus      1990 -~g~dpr~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~g~w~~~ei~~see~~eadlv~lamgf~gpe~~~~~~~~~~~ 2068 (2142)
T KOG0399|consen 1990 -YGSDPRTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFVGPEKSVIEQLNLKT 2068 (2142)
T ss_pred             -hCCCcceeeeeeeeeeccCCCceeeEEEEEEEEEecCCCceEEEEcCCcceeeecceeeeeccccCcchhhhhhcCccc
Confidence             222222111 1123333334433322                  2222 2469999999999987 5545677888887


Q ss_pred             c-CCCEEE-cCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHH
Q 014997          246 S-VGGIQV-DGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIK  298 (414)
Q Consensus       246 ~-~g~i~v-d~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~  298 (414)
                      + ++.|.+ ++.+.|++++|||+|||-....      ..++.++.+++.|+.+-.
T Consensus      2069 d~rsni~t~~~~y~t~v~~vfaagdcrrgqs------lvvwai~egrq~a~~vd~ 2117 (2142)
T KOG0399|consen 2069 DPRSNILTPKDSYSTDVAKVFAAGDCRRGQS------LVVWAIQEGRQAARQVDE 2117 (2142)
T ss_pred             CccccccCCCccccccccceeecccccCCce------EEEEEehhhhHHHHHHHH
Confidence            6 445655 3568899999999999987543      334444444444444433

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.37  E-value=8.8e-11  Score=111.17  Aligned_cols=215  Identities=17%  Similarity=0.252  Sum_probs=138.2

Q ss_pred             hHHHHcCCeEEcCCcEE---EEeCCCC---EEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHH
Q 014997           54 EWYKEKGIEMIYQDPVT---SIDIEKQ---TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALI  127 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~---~id~~~~---~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~  127 (414)
                      +|+...--.++++++|+   .++-+..   .+.+.+++.+.+..|||++|.+|..++.......+.+++...   ....+
T Consensus       105 ~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~IP~~f~~l~~~~vfHss~---~~~~~  181 (436)
T COG3486         105 QWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPYIPPCFRSLIGERVFHSSE---YLERH  181 (436)
T ss_pred             HHHHhhCCccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCCcCCChHHhCcCccceeehHH---HHHhh
Confidence            55556667788999999   4444443   366778889999999999999997444332222234554321   11112


Q ss_pred             HhhcCCCeEEEECCChHHHHHHHHHHhC----CCcEEEEeeCCcccccc--------cCHHHHHH---------------
Q 014997          128 SSLEKAKKVVVVGGGYIGMEVAAAAVGW----KLDTTIIFPENHLLQRL--------FTPSLAQR---------------  180 (414)
Q Consensus       128 ~~~~~~~~vvVvGgG~~g~e~A~~l~~~----g~~Vtlv~~~~~~l~~~--------~~~~~~~~---------------  180 (414)
                      ..+...++|.|||+|.+|.|+-..|...    ..++.++.|+..+++.-        +.|+..++               
T Consensus       182 ~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~  261 (436)
T COG3486         182 PELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRK  261 (436)
T ss_pred             HHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccchhhhhhcCchhHHHHhcCCHHHHHHHHhh
Confidence            2233445599999999999999988653    35688899986654311        11221111               


Q ss_pred             ---------------HHH-----HH--HhCCcEEEcCceEEEEEecCCCcEEEEEe-----CCCcEEecCEEEEccCCcC
Q 014997          181 ---------------YEQ-----LY--QQNGVKFVKGASIKNLEAGSDGRVAAVKL-----EDGSTIDADTIVIGIGAKP  233 (414)
Q Consensus       181 ---------------~~~-----~l--~~~gv~i~~~~~v~~i~~~~~~~~~~v~~-----~~g~~i~~D~vi~a~G~~p  233 (414)
                                     +-+     .+  .+.+|+++.++.|..++..++|++ .+.+     .+.++++.|.||+|||++.
T Consensus       262 ~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~-~l~~~~~~~~~~~t~~~D~vIlATGY~~  340 (436)
T COG3486         262 QRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRY-RLTLRHHETGELETVETDAVILATGYRR  340 (436)
T ss_pred             cCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCceE-EEEEeeccCCCceEEEeeEEEEeccccc
Confidence                           111     11  235688999999999998777752 3333     2335799999999999985


Q ss_pred             CCh-hhhhcC--Cc-ccCCCEEEcCCCCCCC-----CcEEEEcccccc
Q 014997          234 TVS-PFERVG--LN-SSVGGIQVDGQFRTRM-----PGIFAIGDVAAF  272 (414)
Q Consensus       234 ~~~-~l~~~g--l~-~~~g~i~vd~~~~t~~-----~~IyA~GD~a~~  272 (414)
                      ..+ +++...  |. +++|...|+..++...     -.||+.|-+...
T Consensus       341 ~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~ht  388 (436)
T COG3486         341 AVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELHT  388 (436)
T ss_pred             CCchhhhhHHHhhcccccCCeEecCceeeecCCCCcceEEEecccccc
Confidence            443 665432  22 3467899998766421     359999877654

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=99.32  E-value=9.1e-12  Score=120.05  Aligned_cols=169  Identities=21%  Similarity=0.314  Sum_probs=98.6

Q ss_pred             cCCeEEcCCcEEEEeCCC------CEEEeC----CCcEEecCeEEEccCCCCCCCCCCCC-CC-CCCEEEecCHHHHHHH
Q 014997           59 KGIEMIYQDPVTSIDIEK------QTLITN----SGKLLKYGSLIVATGCTASRFPEKIG-GY-LPGVHYIRDVADADAL  126 (414)
Q Consensus        59 ~~i~~~~~~~V~~id~~~------~~V~~~----~g~~~~yd~LviAtG~~~~~~~~~~g-~~-~~gv~~~~~~~~~~~~  126 (414)
                      .+-+++++.+|++|++..      ..|.+.    +++.+.++.||||||..|. +|.... .. .+.+++..++....  
T Consensus       108 ~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~-iP~~~~~~~~~~~v~Hss~~~~~~--  184 (341)
T PF13434_consen  108 LDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPR-IPEWFQDLPGSPRVFHSSEYLSRI--  184 (341)
T ss_dssp             GTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE----GGGGGGTT-TTEEEGGGHHHHH--
T ss_pred             CCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCC-CCcchhhcCCCCCEEEehHhhhcc--
Confidence            354488899999998765      367763    4568999999999998886 454322 11 25677655443322  


Q ss_pred             HHhhcCCCeEEEECCChHHHHHHHHHHhCCC--cEEEEeeCCcccc--------cccCHHH-------------------
Q 014997          127 ISSLEKAKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLLQ--------RLFTPSL-------------------  177 (414)
Q Consensus       127 ~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~--~Vtlv~~~~~~l~--------~~~~~~~-------------------  177 (414)
                       ......++|+|||||.+|.|++..|.+.+.  +|+++.|++.+.+        ..++|+.                   
T Consensus       185 -~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~  263 (341)
T PF13434_consen  185 -DQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLPDEERRELLREQ  263 (341)
T ss_dssp             -T-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS-HHHHHHHHHHT
T ss_pred             -ccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcCCHHHHHHHHHHh
Confidence             114578999999999999999999998764  7999999865432        1223321                   


Q ss_pred             ------------HHHHHH-----HH-HhCCcEEEcCceEEEEEecCCCcEEEEEeCC---C--cEEecCEEEEccCCc
Q 014997          178 ------------AQRYEQ-----LY-QQNGVKFVKGASIKNLEAGSDGRVAAVKLED---G--STIDADTIVIGIGAK  232 (414)
Q Consensus       178 ------------~~~~~~-----~l-~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~---g--~~i~~D~vi~a~G~~  232 (414)
                                  .+.+.+     .+ .+..++++.+++|+.++..+++.+ .+.+.+   +  .++++|.||+|||++
T Consensus       264 ~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~-~l~~~~~~~~~~~~~~~D~VilATGy~  340 (341)
T PF13434_consen  264 RHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGV-RLTLRHRQTGEEETLEVDAVILATGYR  340 (341)
T ss_dssp             GGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSE-EEEEEETTT--EEEEEESEEEE---EE
T ss_pred             HhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEE-EEEEEECCCCCeEEEecCEEEEcCCcc
Confidence                        111111     11 223588999999999987765443 344433   2  479999999999985

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.19  E-value=5e-11  Score=106.67  Aligned_cols=111  Identities=24%  Similarity=0.339  Sum_probs=73.2

Q ss_pred             CCCHhHHHHcCCeEEcCCcEEEEeCCC--CEEEeCCCcEEecCeEEEccCC--CCCCCCCCCC-CCCCCEEEecCHHHHH
Q 014997           50 RQTPEWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGC--TASRFPEKIG-GYLPGVHYIRDVADAD  124 (414)
Q Consensus        50 ~~~~~~~~~~~i~~~~~~~V~~id~~~--~~V~~~~g~~~~yd~LviAtG~--~~~~~~~~~g-~~~~gv~~~~~~~~~~  124 (414)
                      .....++++++++++++++|+++..++  ..|++++++++.+|+||+|||.  .|+ .|.+++ ... ...+...+.+. 
T Consensus        86 ~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~-~p~~~g~~~~-~~~h~~~~~~~-  162 (203)
T PF13738_consen   86 DYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPR-IPDIPGSAFR-PIIHSADWRDP-  162 (203)
T ss_dssp             HHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB----S-TTGGCS-EEEEGGG-STT-
T ss_pred             HHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCC-cccccccccc-ceEehhhcCCh-
Confidence            344556677899999999999998765  4899999988999999999996  554 454555 222 33333222111 


Q ss_pred             HHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc
Q 014997          125 ALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  167 (414)
Q Consensus       125 ~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  167 (414)
                          ...++++|+|||+|.+|+++|..|.+.|.+|+++.|.+.
T Consensus       163 ----~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~  201 (203)
T PF13738_consen  163 ----EDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI  201 (203)
T ss_dssp             ----GGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred             ----hhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence                123679999999999999999999999999999999863

...

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=99.17  E-value=7.1e-10  Score=109.50  Aligned_cols=158  Identities=16%  Similarity=0.181  Sum_probs=111.2

Q ss_pred             EEECCChHHHHHH-HHHH----hCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEE
Q 014997          137 VVVGGGYIGMEVA-AAAV----GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  211 (414)
Q Consensus       137 vVvGgG~~g~e~A-~~l~----~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~  211 (414)
                      .|++.+.+|+|.+ ..+.    ++|.+|+++...+..++.   .++.+.+.+.+++.|++++++++|.+++.. ++.+..
T Consensus       219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG---~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~-~~~V~~  294 (422)
T PRK05329        219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPG---LRLQNALRRAFERLGGRIMPGDEVLGAEFE-GGRVTA  294 (422)
T ss_pred             EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCch---HHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEE
Confidence            6788999999999 5554    479999999988887764   378888999999999999999999999865 445555


Q ss_pred             EEeCCCc--EEecCEEEEccCCcCCChhhhh--------cCCcc--------------------cCCCEEEcCCCC----
Q 014997          212 VKLEDGS--TIDADTIVIGIGAKPTVSPFER--------VGLNS--------------------SVGGIQVDGQFR----  257 (414)
Q Consensus       212 v~~~~g~--~i~~D~vi~a~G~~p~~~~l~~--------~gl~~--------------------~~g~i~vd~~~~----  257 (414)
                      +...+|+  .+++|.+|+|+|..+...+..+        .+|+.                    ..-||.||++++    
T Consensus       295 v~~~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~~~p~~~  374 (422)
T PRK05329        295 VWTRNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDATLRPLDS  374 (422)
T ss_pred             EEeeCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCCcCcccC
Confidence            5555553  5899999999998765433100        01111                    112455555554    


Q ss_pred             ---CCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997          258 ---TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       258 ---t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                         +..+|+||+|++...+++..-..    .-..|...|..|+++++.
T Consensus       375 ~g~~~~~nl~a~G~vl~g~d~~~~~~----g~Gva~~ta~~a~~~~~~  418 (422)
T PRK05329        375 QGGPVIENLYAAGAVLGGYDPIREGC----GSGVALATALHAAEQIAE  418 (422)
T ss_pred             CCCeeccceEEeeehhcCCchHHhCC----CchhHHHHHHHHHHHHHH
Confidence               46899999999998776532110    112467777778877764

>PF14759 Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LXD_A 2YVG_A 2GR1_A 2GQW_A 2GR3_A 2YVF_A 1F3P_A 2GR0_A 2GR2_A

Probab=99.09  E-value=8.8e-10  Score=83.89  Aligned_cols=81  Identities=23%  Similarity=0.382  Sum_probs=65.8

Q ss_pred             ceeeeccCCCCCCcceeeeEeecCCC--cEEEEcCCC-CcEEEEEEeCCEEEEEEeecCChHHhhHHHHHHhCCCCCChh
Q 014997          313 YFYSRVFEYEGSPRKVWWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKA  389 (414)
Q Consensus       313 ~~~~~~~~~~g~~~~~~~~~~G~~~~--~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~  389 (414)
                      ||||+||+.+       +|++|....  +.+.+|+.+ .+|..+|+++|+++|++. +|.++++..++++|+.+..++++
T Consensus         1 ~FWSdQ~~~~-------iq~~G~~~~~~~~v~rg~~~~~~~~~~y~~~g~lva~~~-vn~~~~~~~~rrli~~~~~~~~~   72 (85)
T PF14759_consen    1 WFWSDQYGVR-------IQIAGLPGGADEVVVRGDPESGKFVAFYLRDGRLVAAVS-VNRPRDLRAARRLIAAGARVDPA   72 (85)
T ss_dssp             EEEEEETTEE-------EEEEE-STTSSEEEEEEETTTTEEEEEEEETTEEEEEEE-ES-HHHHHHHHHHHHTT-B--HH
T ss_pred             CeecccCCCe-------EEEEECCCCCCEEEEEccCCCCcEEEEEEcCCEEEEEEe-cCCHHHHHHHHHHHHCCCCcCHH
Confidence            8999999864       999997653  677888876 789999999999999996 89999999999999999999999


Q ss_pred             hhcCCCcHHHHH
Q 014997          390 KLQQASSVEEAL  401 (414)
Q Consensus       390 ~~~~~~~~~~~~  401 (414)
                      .+.++..-...+
T Consensus        73 ~l~d~~~~L~~l   84 (85)
T PF14759_consen   73 RLADPSVDLRSL   84 (85)
T ss_dssp             HHHSTTSHHHHH
T ss_pred             HhcCCCCChHHh
Confidence            998887765543

...

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.89  E-value=2.2e-08  Score=94.98  Aligned_cols=99  Identities=22%  Similarity=0.317  Sum_probs=78.9

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc---cc--------cc----ccCHHHHHHHHHHHHhCCcEEEcCceEE
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH---LL--------QR----LFTPSLAQRYEQLYQQNGVKFVKGASIK  199 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~---~l--------~~----~~~~~~~~~~~~~l~~~gv~i~~~~~v~  199 (414)
                      +|+|||||+.|+++|..|+++|.+|+++++.+.   +.        +.    ..+.++...+.+.+++.|+++++ .+|.
T Consensus         2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~   80 (300)
T TIGR01292         2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEVI   80 (300)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEEE
Confidence            589999999999999999999999999997641   11        11    12357778888888999999998 8898


Q ss_pred             EEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCCh
Q 014997          200 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       200 ~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  236 (414)
                      +++..++  ...+.+.+++++.+|.+|+|+|..|+..
T Consensus        81 ~v~~~~~--~~~v~~~~~~~~~~d~liiAtG~~~~~~  115 (300)
T TIGR01292        81 KVDLSDR--PFKVKTGDGKEYTAKAVIIATGASARKL  115 (300)
T ss_pred             EEEecCC--eeEEEeCCCCEEEeCEEEECCCCCcccC
Confidence            9876432  2356777888999999999999988643

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=98.85  E-value=4.4e-08  Score=93.31  Aligned_cols=110  Identities=19%  Similarity=0.324  Sum_probs=86.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc---------------------------------------------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL---------------------------------------------  168 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~---------------------------------------------  168 (414)
                      ..|+|||||+.|+-+|..+++.|.+|+++++++.+                                             
T Consensus         4 ~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~d   83 (408)
T COG2081           4 FDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPED   83 (408)
T ss_pred             ceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHHH
Confidence            57999999999999999999999999999987332                                             


Q ss_pred             ----------------cccccC-----HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEE
Q 014997          169 ----------------LQRLFT-----PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI  227 (414)
Q Consensus       169 ----------------l~~~~~-----~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~  227 (414)
                                      ..++|+     ..+.+.+.+.+++.||+++++++|.+++.++  ....+.+.+|+++.||.+|+
T Consensus        84 ~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~--~~f~l~t~~g~~i~~d~lil  161 (408)
T COG2081          84 FIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD--SGFRLDTSSGETVKCDSLIL  161 (408)
T ss_pred             HHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC--ceEEEEcCCCCEEEccEEEE
Confidence                            011121     2455677788899999999999999998653  34578889998999999999


Q ss_pred             ccC--CcCCC-------hhhhhcCCcc
Q 014997          228 GIG--AKPTV-------SPFERVGLNS  245 (414)
Q Consensus       228 a~G--~~p~~-------~~l~~~gl~~  245 (414)
                      |+|  ..|.+       .++++.|++.
T Consensus       162 AtGG~S~P~lGstg~gy~iA~~~G~~I  188 (408)
T COG2081         162 ATGGKSWPKLGSTGFGYPIARQFGHTI  188 (408)
T ss_pred             ecCCcCCCCCCCCchhhHHHHHcCCcc
Confidence            999  44532       3567777654

>PTZ00188 adrenodoxin reductase; Provisional

Probab=98.78  E-value=2e-07  Score=92.58  Aligned_cols=101  Identities=17%  Similarity=0.181  Sum_probs=61.6

Q ss_pred             CCcEEEcCceEEEEEecCCCcEEEEEeC-----------CC--cEEecCEEEEccCCcCCChhhhhcCCcccCCCEEEcC
Q 014997          188 NGVKFVKGASIKNLEAGSDGRVAAVKLE-----------DG--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDG  254 (414)
Q Consensus       188 ~gv~i~~~~~v~~i~~~~~~~~~~v~~~-----------~g--~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~g~i~vd~  254 (414)
                      +-+.+++..+..+|.. .++++..+++.           .|  +.++||+|+-++|++...  +.  |++.+ ..+... 
T Consensus       324 r~i~l~F~~sP~ei~~-~~~~v~~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~p--~~--g~pFd-~~~~n~-  396 (506)
T PTZ00188        324 KIIEFIFYFEIRQIRP-IDGAMKNVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKSN--FA--ENLYN-QSVQMF-  396 (506)
T ss_pred             eEEEEEccCCceEEEC-CCCcEeEEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCCC--CC--CCCcc-ccCCCC-
Confidence            3466777778888874 24667666665           23  369999999999998641  22  23333 222221 


Q ss_pred             CCCC--CCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHH
Q 014997          255 QFRT--RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL  300 (414)
Q Consensus       255 ~~~t--~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i  300 (414)
                      ..+.  ..|++|++|-+...|....|.     +..+|...+..+...+
T Consensus       397 ~grv~~~~~g~Y~~GWiKrGP~GvIgt-----n~~da~~t~~~v~~d~  439 (506)
T PTZ00188        397 KEDIGQHKFAIFKAGWFDKGPKGNIAS-----QILNSKNSTHLVLNFL  439 (506)
T ss_pred             CCcccCCCCCcEEeeecCcCCCceecc-----CcccHHHHHHHHHHHH
Confidence            1222  369999999999887665444     2334555555444443

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=98.72  E-value=9e-08  Score=95.79  Aligned_cols=111  Identities=18%  Similarity=0.235  Sum_probs=74.6

Q ss_pred             CHhHHHHcCCe--EEcCCcEEEEeCCC----CEEEeCCCcE--EecCeEEEccCC--CCCCCCCCCCCCCCCEEEecCHH
Q 014997           52 TPEWYKEKGIE--MIYQDPVTSIDIEK----QTLITNSGKL--LKYGSLIVATGC--TASRFPEKIGGYLPGVHYIRDVA  121 (414)
Q Consensus        52 ~~~~~~~~~i~--~~~~~~V~~id~~~----~~V~~~~g~~--~~yd~LviAtG~--~~~~~~~~~g~~~~gv~~~~~~~  121 (414)
                      ..++++++++.  +..+..|..++.+.    .+|++++|..  +.+|+||+|||.  .|. .|.++|.+......++   
T Consensus        88 ~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~-iP~~~G~~~f~g~~~H---  163 (443)
T COG2072          88 IKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPY-IPDFAGLDEFKGRILH---  163 (443)
T ss_pred             HHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCC-CCCCCCccCCCceEEc---
Confidence            34566666654  44455666565544    3788888865  459999999996  343 4555554321111222   


Q ss_pred             HHHHHHH-hhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc
Q 014997          122 DADALIS-SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  167 (414)
Q Consensus       122 ~~~~~~~-~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  167 (414)
                       +.+..+ ....+|+|+|||+|.+|+++|..|.+.|.+||++.|.+.
T Consensus       164 -S~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~  209 (443)
T COG2072         164 -SADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPP  209 (443)
T ss_pred             -hhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCC
Confidence             222111 124799999999999999999999999999999999864

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=98.67  E-value=2.6e-07  Score=86.92  Aligned_cols=66  Identities=29%  Similarity=0.462  Sum_probs=47.6

Q ss_pred             EecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHH-------HHHHHHhhcCCCeEEEECCChHHHHHHHHHH
Q 014997           87 LKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVAD-------ADALISSLEKAKKVVVVGGGYIGMEVAAAAV  153 (414)
Q Consensus        87 ~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~-------~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~  153 (414)
                      -.||.+|||+|+.-.+-..+||.++.||++.+.+-.       .+.+...+ .+.+|+|||.|+.++++|..|.
T Consensus       107 ~~ydavvLaYGa~~dR~L~IPGe~l~~V~Sarefv~Wyng~P~~~~le~dl-s~~~vvIvG~GNVAlDvARiLl  179 (468)
T KOG1800|consen  107 DNYDAVVLAYGADGDRRLDIPGEELSGVISAREFVGWYNGLPENQNLEPDL-SGRKVVIVGNGNVALDVARILL  179 (468)
T ss_pred             hcccEEEEEecCCCCcccCCCCcccccceehhhhhhhccCCCcccccCccc-ccceEEEEccCchhhhhhhhhh
Confidence            479999999999644445678988899987653321       11111112 3789999999999999999874

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.62  E-value=3.1e-07  Score=91.00  Aligned_cols=98  Identities=27%  Similarity=0.399  Sum_probs=72.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCC--cEEEEeeCCccc-cc-ccCHHHH---------HHHHHHHHhCCcEEEcCceEE
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLL-QR-LFTPSLA---------QRYEQLYQQNGVKFVKGASIK  199 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~--~Vtlv~~~~~~l-~~-~~~~~~~---------~~~~~~l~~~gv~i~~~~~v~  199 (414)
                      .++|+|||||+.|+.+|..|++.+.  +|+++++.+.+. .+ .+...+.         ..-.+.+.+.||+++.++.|.
T Consensus         3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~   82 (396)
T PRK09754          3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK   82 (396)
T ss_pred             cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence            4689999999999999999999875  799998775421 11 1111110         001244677899999999999


Q ss_pred             EEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997          200 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       200 ~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (414)
                      .+...  .+  .+.+++|+++.+|.+|+|||.+|.
T Consensus        83 ~id~~--~~--~v~~~~g~~~~yd~LViATGs~~~  113 (396)
T PRK09754         83 TLGRD--TR--ELVLTNGESWHWDQLFIATGAAAR  113 (396)
T ss_pred             EEECC--CC--EEEECCCCEEEcCEEEEccCCCCC
Confidence            99753  22  567788889999999999999985

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=98.61  E-value=3.1e-07  Score=90.65  Aligned_cols=109  Identities=19%  Similarity=0.340  Sum_probs=70.3

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc----------------------------------------------
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL----------------------------------------------  168 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~----------------------------------------------  168 (414)
                      +|+|||||++|+-+|..+++.|.+|+|+++++++                                              
T Consensus         2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~d   81 (409)
T PF03486_consen    2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPED   81 (409)
T ss_dssp             SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HHH
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHHH
Confidence            5899999999999999999999999999998332                                              


Q ss_pred             --------------------ccccc-CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEE
Q 014997          169 --------------------LQRLF-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI  227 (414)
Q Consensus       169 --------------------l~~~~-~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~  227 (414)
                                          .|... ..++.+.+.+.+++.||+++++++|.++... ++.+..|.++++..+.||.||+
T Consensus        82 ~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~-~~~~f~v~~~~~~~~~a~~vIL  160 (409)
T PF03486_consen   82 LIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKK-EDGVFGVKTKNGGEYEADAVIL  160 (409)
T ss_dssp             HHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEE-TTEEEEEEETTTEEEEESEEEE
T ss_pred             HHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeec-CCceeEeeccCcccccCCEEEE
Confidence                                11110 1235566777788999999999999999865 3445678887778999999999


Q ss_pred             ccCCcCC--C-------hhhhhcCCc
Q 014997          228 GIGAKPT--V-------SPFERVGLN  244 (414)
Q Consensus       228 a~G~~p~--~-------~~l~~~gl~  244 (414)
                      |+|-...  +       .++++.|..
T Consensus       161 AtGG~S~p~~GS~G~gy~~a~~lGh~  186 (409)
T PF03486_consen  161 ATGGKSYPKTGSDGSGYRIAKKLGHT  186 (409)
T ss_dssp             ----SSSGGGT-SSHHHHHHHHTT--
T ss_pred             ecCCCCccccCCCcHHHHHHHHCCCc
Confidence            9997542  1       246666654

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.58  E-value=4.3e-06  Score=77.39  Aligned_cols=166  Identities=18%  Similarity=0.234  Sum_probs=102.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc----------cc---------------------------cCH
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------RL---------------------------FTP  175 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~----------~~---------------------------~~~  175 (414)
                      .-+|+|||+|+.|+-+|..|++.|.+|.++++...+..          ..                           ...
T Consensus        21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~  100 (254)
T TIGR00292        21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSA  100 (254)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHH
Confidence            45799999999999999999999999999998754310          00                           011


Q ss_pred             HHHHHHHHHHHhCCcEEEcCceEEEEEecCCC-cEEEEEeC-----------CCcEEecCEEEEccCCcCCC-hhh-hhc
Q 014997          176 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG-RVAAVKLE-----------DGSTIDADTIVIGIGAKPTV-SPF-ERV  241 (414)
Q Consensus       176 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~-~~~~v~~~-----------~g~~i~~D~vi~a~G~~p~~-~~l-~~~  241 (414)
                      ++...+.+...+.|++++.++.+.++...+++ ++..+...           +...+.++.||.|+|..... .++ +..
T Consensus       101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l~~~~  180 (254)
T TIGR00292       101 EFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVCAKKI  180 (254)
T ss_pred             HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHHHHHc
Confidence            23445556667889999999999998764442 56666553           22479999999999976533 333 333


Q ss_pred             CCcccC------CCE--------EEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997          242 GLNSSV------GGI--------QVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       242 gl~~~~------g~i--------~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                      ++....      +..        .|+.+-+ -+|++|++|=.+.-... ..++.+  ....-...|+.||..++.
T Consensus       181 ~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~-~~~g~~~~gm~~~~~~~-~~rmgp--~fg~m~~sg~~~a~~~~~  251 (254)
T TIGR00292       181 VLEDQVPKLGGEKSMWAEVAEVAIHENTRE-VVPNLYVAGMAVAAVHG-LPRMGP--IFGGMLLSGKHVAEQILE  251 (254)
T ss_pred             CcccCCcccCCchhhhhhhhHHHHHhccCc-ccCCEEEechhhhhhcC-CCCcCc--hHHHHHHhhHHHHHHHHH
Confidence            322110      111        1111111 47999999987653211 011111  122223467777776653

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.57  E-value=8.1e-07  Score=91.00  Aligned_cols=101  Identities=24%  Similarity=0.353  Sum_probs=79.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC--Cccc-----------ccccCHHHHHHHHHHHHhCCcEEEcCceE
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE--NHLL-----------QRLFTPSLAQRYEQLYQQNGVKFVKGASI  198 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~--~~~l-----------~~~~~~~~~~~~~~~l~~~gv~i~~~~~v  198 (414)
                      ...+|+|||||+.|+.+|..|++.|.+|++++..  ..+.           +....+++.+.+.+.+++.|++++.+++|
T Consensus       211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V  290 (515)
T TIGR03140       211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRA  290 (515)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEE
Confidence            3468999999999999999999999999998642  1111           11234567778888888999999999999


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997          199 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       199 ~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (414)
                      ..+...++  ...+.+++|+.+.+|.+|+|+|..|.
T Consensus       291 ~~I~~~~~--~~~v~~~~g~~i~~d~lIlAtGa~~~  324 (515)
T TIGR03140       291 KKIETEDG--LIVVTLESGEVLKAKSVIVATGARWR  324 (515)
T ss_pred             EEEEecCC--eEEEEECCCCEEEeCEEEECCCCCcC
Confidence            99975432  23567788888999999999999875

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.56  E-value=6e-07  Score=80.13  Aligned_cols=97  Identities=21%  Similarity=0.357  Sum_probs=67.3

Q ss_pred             EEECCChHHHHHHHHHHhCCCc-EEEEeeCCcccc--------------c----------------------------cc
Q 014997          137 VVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLLQ--------------R----------------------------LF  173 (414)
Q Consensus       137 vVvGgG~~g~e~A~~l~~~g~~-Vtlv~~~~~~l~--------------~----------------------------~~  173 (414)
                      +|||+|+.|+-+|..|.+.|.+ ++++++.+.+..              .                            ..
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS   80 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence            6999999999999999999999 999998743310              0                            00


Q ss_pred             CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCC--cCCC
Q 014997          174 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA--KPTV  235 (414)
Q Consensus       174 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~--~p~~  235 (414)
                      .+++.++++...++.+++++++++|+++..++++  ..|++.+++++.||.||+|+|.  .|..
T Consensus        81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~--w~v~~~~~~~~~a~~VVlAtG~~~~p~~  142 (203)
T PF13738_consen   81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG--WTVTTRDGRTIRADRVVLATGHYSHPRI  142 (203)
T ss_dssp             HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTT--EEEEETTS-EEEEEEEEE---SSCSB--
T ss_pred             HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccE--EEEEEEecceeeeeeEEEeeeccCCCCc
Confidence            1234567788888899999999999999987655  4788899888999999999997  4543

...

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=98.55  E-value=2.9e-06  Score=78.68  Aligned_cols=166  Identities=19%  Similarity=0.220  Sum_probs=102.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc----------c--------------------------c-CH
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------L--------------------------F-TP  175 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~----------~--------------------------~-~~  175 (414)
                      ...|+|||+|+.|+-+|..|++.|.+|.++++.+.+...          .                          . ..
T Consensus        25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~  104 (257)
T PRK04176         25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSV  104 (257)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHH
Confidence            357999999999999999999999999999987543110          0                          0 12


Q ss_pred             HHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeC-----------CCcEEecCEEEEccCCcCCCh-hh-hhcC
Q 014997          176 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-----------DGSTIDADTIVIGIGAKPTVS-PF-ERVG  242 (414)
Q Consensus       176 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~-----------~g~~i~~D~vi~a~G~~p~~~-~l-~~~g  242 (414)
                      .+...+.+..++.|++++.++.+..+...+++++..+...           +...+.|+.||.|+|...... .+ +...
T Consensus       105 ~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l~~~~~  184 (257)
T PRK04176        105 EAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVLARKGP  184 (257)
T ss_pred             HHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHHHHHcC
Confidence            3444566666788999999999999876545465555432           224799999999999765422 12 2111


Q ss_pred             ---Cccc-CC--------CEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997          243 ---LNSS-VG--------GIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       243 ---l~~~-~g--------~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                         .... ..        ...|+.+-+ -+|++|++|=.+..... ..++-+  ....-...|+.||..++.
T Consensus       185 ~~~~~~~g~~~~~~~~~e~~v~~~t~~-~~~g~~~~gm~~~~~~~-~~rmg~--~fg~m~~sg~~~a~~~~~  252 (257)
T PRK04176        185 ELGIEVPGEKSMWAERGEKLVVENTGE-VYPGLYVAGMAANAVHG-LPRMGP--IFGGMLLSGKKVAELILE  252 (257)
T ss_pred             CcccccCCccccccCchHHHHHhcCCe-EcCCEEEeehhhhhhcC-CCccCc--hhHhHHHhHHHHHHHHHH
Confidence               1110 01        112222222 37999999988763221 011111  122223467777776653

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.54  E-value=1.2e-06  Score=89.85  Aligned_cols=100  Identities=25%  Similarity=0.368  Sum_probs=80.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC--Ccc-----------cccccCHHHHHHHHHHHHhCCcEEEcCceEE
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE--NHL-----------LQRLFTPSLAQRYEQLYQQNGVKFVKGASIK  199 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~--~~~-----------l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~  199 (414)
                      ..+|+|||||+.|+.+|..++++|.+|+++...  ...           .+...++++.+.+.+.+++.|++++.++++.
T Consensus       211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~  290 (517)
T PRK15317        211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRAS  290 (517)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence            358999999999999999999999999999753  111           0112345777888888999999999999999


Q ss_pred             EEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997          200 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       200 ~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (414)
                      .+...++  ...+.+.+|+++.+|.+|+|+|.+|.
T Consensus       291 ~I~~~~~--~~~V~~~~g~~i~a~~vViAtG~~~r  323 (517)
T PRK15317        291 KLEPAAG--LIEVELANGAVLKAKTVILATGARWR  323 (517)
T ss_pred             EEEecCC--eEEEEECCCCEEEcCEEEECCCCCcC
Confidence            9976432  23567788889999999999999875

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.53  E-value=3.1e-07  Score=91.03  Aligned_cols=169  Identities=20%  Similarity=0.268  Sum_probs=104.3

Q ss_pred             CHhHHHHcCC--eEEcCCcEEEEeCCC---CEEEeCCC----cEEecCeEEEccCCCC-CCCCCCCCC---CCCCEEEec
Q 014997           52 TPEWYKEKGI--EMIYQDPVTSIDIEK---QTLITNSG----KLLKYGSLIVATGCTA-SRFPEKIGG---YLPGVHYIR  118 (414)
Q Consensus        52 ~~~~~~~~~i--~~~~~~~V~~id~~~---~~V~~~~g----~~~~yd~LviAtG~~~-~~~~~~~g~---~~~gv~~~~  118 (414)
                      +.++++..++  .+.++++|..+++..   ..|.+.++    +..-||.|++|||... ..+|.+++.   ..+|-.   
T Consensus        96 L~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g~~~~~f~G~~---  172 (448)
T KOG1399|consen   96 LRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPGPGIESFKGKI---  172 (448)
T ss_pred             HHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCCCchhhcCCcc---
Confidence            4455666675  477788888888765   36666544    4689999999999873 235554442   233311   


Q ss_pred             CHHHHHHHH-HhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCce
Q 014997          119 DVADADALI-SSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGAS  197 (414)
Q Consensus       119 ~~~~~~~~~-~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~  197 (414)
                        -++.+.+ ...-.+|+|+|||+|.+|++++..++....+|++..+ ...... ..+       .. .-.++..+..  
T Consensus       173 --iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~-~~~~~~-~~~-------~~-~~~~~~~~~~--  238 (448)
T KOG1399|consen  173 --IHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVV-SPKVHV-EPP-------EI-LGENLWQVPS--  238 (448)
T ss_pred             --eehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeee-cccccc-ccc-------ce-eecceEEccc--
Confidence              1122222 2234679999999999999999999888888887754 100000 000       00 1112333322  


Q ss_pred             EEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhcC
Q 014997          198 IKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG  242 (414)
Q Consensus       198 v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~g  242 (414)
                      |..+..  ++   .+.+.++....+|.+|+|+|+.-...+++..+
T Consensus       239 i~~~~e--~~---~~~~~~~~~~~~D~ii~ctgy~y~fPfl~~~~  278 (448)
T KOG1399|consen  239 IKSFTE--DG---SVFEKGGPVERVDRIIFCTGYKYKFPFLETLG  278 (448)
T ss_pred             cccccC--cc---eEEEcCceeEEeeeEEEeeeeEeecceeccCC
Confidence            555542  22   35667777889999999999987766665543

>PRK06847 hypothetical protein; Provisional

Probab=98.50  E-value=1.7e-06  Score=85.03  Aligned_cols=102  Identities=26%  Similarity=0.368  Sum_probs=78.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc-----------------------------------------
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-----------------------------------------  170 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-----------------------------------------  170 (414)
                      +.++|+|||||+.|+-+|..|++.|.+|+++++.+.+-.                                         
T Consensus         3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g   82 (375)
T PRK06847          3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDG   82 (375)
T ss_pred             CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCC
Confidence            357899999999999999999999999999997642100                                         


Q ss_pred             ----cc----------------cCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccC
Q 014997          171 ----RL----------------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG  230 (414)
Q Consensus       171 ----~~----------------~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G  230 (414)
                          ..                ..+++.+.+.+.+++.|++++.++++++++..+++  ..+.+.+|+++.+|.||.|.|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vI~AdG  160 (375)
T PRK06847         83 TLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDG--VTVTFSDGTTGRYDLVVGADG  160 (375)
T ss_pred             CEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCE--EEEEEcCCCEEEcCEEEECcC
Confidence                00                00234455666677789999999999999864333  357788899999999999999


Q ss_pred             CcCCC
Q 014997          231 AKPTV  235 (414)
Q Consensus       231 ~~p~~  235 (414)
                      ..+..
T Consensus       161 ~~s~~  165 (375)
T PRK06847        161 LYSKV  165 (375)
T ss_pred             CCcch
Confidence            87654

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.50  E-value=7.7e-07  Score=89.59  Aligned_cols=101  Identities=22%  Similarity=0.404  Sum_probs=71.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhCC--CcEEEEeeCCccc------cccc----C--HHHHHHHHHHHHhCCcEEEcCceEE
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLL------QRLF----T--PSLAQRYEQLYQQNGVKFVKGASIK  199 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l------~~~~----~--~~~~~~~~~~l~~~gv~i~~~~~v~  199 (414)
                      ++|+|||||+.|+.+|..|++++  .+|+++++.+.+.      +...    .  .+......+.+++.||+++.++.|.
T Consensus         1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~   80 (444)
T PRK09564          1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVV   80 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEE
Confidence            47999999999999999999875  4899999887531      1111    1  1122233456788899999999999


Q ss_pred             EEEecCCCcEEEEEe-CCCcEEe--cCEEEEccCCcCCCh
Q 014997          200 NLEAGSDGRVAAVKL-EDGSTID--ADTIVIGIGAKPTVS  236 (414)
Q Consensus       200 ~i~~~~~~~~~~v~~-~~g~~i~--~D~vi~a~G~~p~~~  236 (414)
                      +++.++  +...+.. .+|+.+.  +|.+|+|+|.+|+..
T Consensus        81 ~id~~~--~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~  118 (444)
T PRK09564         81 KVDAKN--KTITVKNLKTGSIFNDTYDKLMIATGARPIIP  118 (444)
T ss_pred             EEECCC--CEEEEEECCCCCEEEecCCEEEECCCCCCCCC
Confidence            997542  2222322 2355666  999999999998754

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.47  E-value=8.9e-06  Score=81.89  Aligned_cols=103  Identities=15%  Similarity=0.183  Sum_probs=75.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccc---------------------------------------
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL---------------------------------------  172 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~---------------------------------------  172 (414)
                      ..++|+|||+|++|+-+|..|++.|.+|+++++++.+...+                                       
T Consensus         9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f   88 (461)
T PLN02172          9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY   88 (461)
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence            45899999999999999999999999999999864321100                                       


Q ss_pred             ------------------c--CHHHHHHHHHHHHhCCcE--EEcCceEEEEEecCCCcEEEEEeCC--Cc--EEecCEEE
Q 014997          173 ------------------F--TPSLAQRYEQLYQQNGVK--FVKGASIKNLEAGSDGRVAAVKLED--GS--TIDADTIV  226 (414)
Q Consensus       173 ------------------~--~~~~~~~~~~~l~~~gv~--i~~~~~v~~i~~~~~~~~~~v~~~~--g~--~i~~D~vi  226 (414)
                                        +  ..++.+++++..+..|+.  +.++++|.+++..++.  ..|.+.+  +.  +..+|.||
T Consensus        89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~--w~V~~~~~~~~~~~~~~d~VI  166 (461)
T PLN02172         89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGK--WRVQSKNSGGFSKDEIFDAVV  166 (461)
T ss_pred             CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCe--EEEEEEcCCCceEEEEcCEEE
Confidence                              0  034666777777788988  8899999999865332  2344432  22  46799999


Q ss_pred             EccC--CcCCCh
Q 014997          227 IGIG--AKPTVS  236 (414)
Q Consensus       227 ~a~G--~~p~~~  236 (414)
                      +|+|  ..|+..
T Consensus       167 vAtG~~~~P~~P  178 (461)
T PLN02172        167 VCNGHYTEPNVA  178 (461)
T ss_pred             EeccCCCCCcCC
Confidence            9999  456543

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=98.42  E-value=1.2e-06  Score=85.68  Aligned_cols=97  Identities=20%  Similarity=0.327  Sum_probs=72.1

Q ss_pred             eEEEECCChHHHHHHHHHHhC---CCcEEEEeeCCcccc-cccC---------HHHHHHHHHHHHhCCcEEEcCceEEEE
Q 014997          135 KVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPENHLLQ-RLFT---------PSLAQRYEQLYQQNGVKFVKGASIKNL  201 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~---g~~Vtlv~~~~~~l~-~~~~---------~~~~~~~~~~l~~~gv~i~~~~~v~~i  201 (414)
                      +|+|||||+.|+.+|..|+++   +.+|+++++.+.... +.++         .++...+.+.+++.||+++.+ .|+++
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~i   79 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA-EATGI   79 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEE-EEEEE
Confidence            589999999999999999643   588999998765321 1111         123233456677889999885 78888


Q ss_pred             EecCCCcEEEEEeCCCcEEecCEEEEccCCcCCCh
Q 014997          202 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       202 ~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  236 (414)
                      +...  +  .|.+.+|+++.+|.+|+|+|.+|+..
T Consensus        80 d~~~--~--~V~~~~g~~~~yD~LviAtG~~~~~~  110 (364)
T TIGR03169        80 DPDR--R--KVLLANRPPLSYDVLSLDVGSTTPLS  110 (364)
T ss_pred             eccc--C--EEEECCCCcccccEEEEccCCCCCCC
Confidence            7542  2  57788898899999999999998744

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.41  E-value=1.9e-06  Score=86.14  Aligned_cols=99  Identities=23%  Similarity=0.373  Sum_probs=71.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccccc---------C-HHHHHHHHHHHHhCCcEEEcCceEEEE
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLF---------T-PSLAQRYEQLYQQNGVKFVKGASIKNL  201 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~---------~-~~~~~~~~~~l~~~gv~i~~~~~v~~i  201 (414)
                      ..++|||||||+.|+.+|..|.+.+.+||+|++.+......+         + ..+...+.+.++..+++++. .+|++|
T Consensus         9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~-~~V~~I   87 (424)
T PTZ00318          9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLR-AVVYDV   87 (424)
T ss_pred             CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEE-EEEEEE
Confidence            457999999999999999999766789999998876432111         1 12222345556677898876 478888


Q ss_pred             EecCCCcEEEEEe----------CCCcEEecCEEEEccCCcCCC
Q 014997          202 EAGSDGRVAAVKL----------EDGSTIDADTIVIGIGAKPTV  235 (414)
Q Consensus       202 ~~~~~~~~~~v~~----------~~g~~i~~D~vi~a~G~~p~~  235 (414)
                      +.+.  +  .+.+          ++|.++++|.+|+|+|.+|+.
T Consensus        88 d~~~--~--~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~  127 (424)
T PTZ00318         88 DFEE--K--RVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNT  127 (424)
T ss_pred             EcCC--C--EEEEecccccccccCCceEecCCEEEECCCcccCC
Confidence            7542  2  2333          466789999999999999764

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=98.40  E-value=1.4e-06  Score=93.47  Aligned_cols=97  Identities=19%  Similarity=0.419  Sum_probs=73.8

Q ss_pred             EEEECCChHHHHHHHHHHhCC---CcEEEEeeCCccc------ccccC-----HHHHHHHHHHHHhCCcEEEcCceEEEE
Q 014997          136 VVVVGGGYIGMEVAAAAVGWK---LDTTIIFPENHLL------QRLFT-----PSLAQRYEQLYQQNGVKFVKGASIKNL  201 (414)
Q Consensus       136 vvVvGgG~~g~e~A~~l~~~g---~~Vtlv~~~~~~l------~~~~~-----~~~~~~~~~~l~~~gv~i~~~~~v~~i  201 (414)
                      |||||+|+.|+.+|..|++++   .+||++++.+++.      +..+.     +++.....+.+++.||++++++.|+.+
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I   80 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI   80 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence            589999999999999988754   6899999887642      11111     112122346678899999999999999


Q ss_pred             EecCCCcEEEEEeCCCcEEecCEEEEccCCcCCCh
Q 014997          202 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       202 ~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  236 (414)
                      +..  .+  .|.+.+|+++++|.+|+|||..|...
T Consensus        81 d~~--~k--~V~~~~g~~~~yD~LVlATGs~p~~p  111 (785)
T TIGR02374        81 DTD--QK--QVITDAGRTLSYDKLILATGSYPFIL  111 (785)
T ss_pred             ECC--CC--EEEECCCcEeeCCEEEECCCCCcCCC
Confidence            754  22  57788898999999999999998744

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.39  E-value=2.1e-05  Score=77.06  Aligned_cols=230  Identities=20%  Similarity=0.302  Sum_probs=130.6

Q ss_pred             CeEEcCCcEEEEeCC----CCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCE-EEecCHHHHHHHHHhhcCCCe
Q 014997           61 IEMIYQDPVTSIDIE----KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGV-HYIRDVADADALISSLEKAKK  135 (414)
Q Consensus        61 i~~~~~~~V~~id~~----~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv-~~~~~~~~~~~~~~~~~~~~~  135 (414)
                      +.++. ++++.+.+.    ...+.+.+|+...+|-+|+|||..+...+. ...++++- -++.+...... +..+....+
T Consensus       122 v~~~~-~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlatgh~~~~~~~-~~~~~~~~~~~ia~~~~~~~-ld~v~~~dr  198 (474)
T COG4529         122 VRTIR-EEATSVRQDTNAGGYLVTTADGPSEIADIIVLATGHSAPPADP-AARDLKGSPRLIADPYPANA-LDGVDADDR  198 (474)
T ss_pred             eeEEe-eeeecceeccCCceEEEecCCCCeeeeeEEEEeccCCCCCcch-hhhccCCCcceeccccCCcc-cccccCCCc
Confidence            45544 567766655    237788899999999999999976532222 11222221 12222222222 223445667


Q ss_pred             EEEECCChHHHHHHHHHHhCCC--cEEEEeeCCccccc------------c-----------------------------
Q 014997          136 VVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLLQR------------L-----------------------------  172 (414)
Q Consensus       136 vvVvGgG~~g~e~A~~l~~~g~--~Vtlv~~~~~~l~~------------~-----------------------------  172 (414)
                      |+|+|+|.+.++....|+++|.  +||++.|.. ++++            .                             
T Consensus       199 Vli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG-l~~~~h~~~~~~p~~d~~~~p~~s~~~L~~~vR~~l~e~e~~g~~w  277 (474)
T COG4529         199 VLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG-LVPRPHIPVPYEPLGDFLSDPANSALSLLSIVRLLLREAEEAGQDW  277 (474)
T ss_pred             eEEecCCchhHHHHHHHhccCCccceEEEeccc-cccCCCCCCCccccccccchhhhhhhhHHHHHHHHHHHHHHhCCCH
Confidence            9999999999999999999874  588888772 1100            0                             


Q ss_pred             ----------------------------------------cCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEE
Q 014997          173 ----------------------------------------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV  212 (414)
Q Consensus       173 ----------------------------------------~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v  212 (414)
                                                              +.+.+...+.+.+.+.-++++-+ ++..|.....+.....
T Consensus       278 ~~v~D~lR~~~~~~wq~l~~~er~rf~rH~~~~~dvHr~R~a~~v~~~~~~~~a~G~~~l~ag-~~~~i~~~~eg~~v~~  356 (474)
T COG4529         278 RDVVDGLRPQGQWIWQNLPAVERRRFERHLRPIWDVHRFRLAPAVQAAVPQLLAEGLLELVAG-RVVSIDREGEGRAVTY  356 (474)
T ss_pred             HHHHHhhhhhhhHHHHhCCHHHHHHHHHhcccHHHHHHhhhhHHHHhhhhHHhhcchhheecC-ceeecccccCCceEEe
Confidence                                                    01111111222222222344433 3455554444432222


Q ss_pred             EeC--C-CcEEecCEEEEccCCcCCCh-----hhh---hcCCcc---cCCCEEEcCCCCC------CCCcEEEEcccccc
Q 014997          213 KLE--D-GSTIDADTIVIGIGAKPTVS-----PFE---RVGLNS---SVGGIQVDGQFRT------RMPGIFAIGDVAAF  272 (414)
Q Consensus       213 ~~~--~-g~~i~~D~vi~a~G~~p~~~-----~l~---~~gl~~---~~g~i~vd~~~~t------~~~~IyA~GD~a~~  272 (414)
                      ...  + -+++++|.||-|+|..+...     +|.   +.|+..   ...||.|+++.+.      ..++.||+|-.+..
T Consensus       357 r~rg~~~~~~l~~~~VIn~~g~~~~~~~~s~~~L~sl~~~Gl~rpd~~~lGl~v~~~~~v~~~~g~~~~~~fa~Gplt~G  436 (474)
T COG4529         357 RERGKQHEEELDVDAVINTTGPAHDNSLSSDPFLRSLGENGLARPDPPGLGLDVSDDSEVLGEDGERVTGLFAAGPLTRG  436 (474)
T ss_pred             eccccCccceeeeeEEEEcCCcCcCCCccchHHHHHHHhCCccccCCCCCceeeCCCCcccCCCCccccCceeeccccCC
Confidence            221  1 14789999999999876432     333   345543   2468999887764      46889999988765


Q ss_pred             CCccCCcccccccHHHHHHHHHHHHHHHh
Q 014997          273 PLKMYDRTARVEHVDHARQSAQHCIKALL  301 (414)
Q Consensus       273 ~~~~~~~~~~~~~~~~A~~~a~~aa~~i~  301 (414)
                      ....      +.....-..|+..+|..++
T Consensus       437 ~f~e------i~~vP~v~~qa~~~A~~l~  459 (474)
T COG4529         437 TFWE------IDGVPDVRVQAARLAAQLA  459 (474)
T ss_pred             chhh------hccChHHHHHHHHHHHHHh
Confidence            4211      1122334556666666665

>PRK07236 hypothetical protein; Provisional

Probab=98.38  E-value=2.9e-06  Score=83.81  Aligned_cols=101  Identities=20%  Similarity=0.299  Sum_probs=72.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc-----ccCHHHHHHHH------------------------
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----LFTPSLAQRYE------------------------  182 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----~~~~~~~~~~~------------------------  182 (414)
                      ...+|+|||||+.|+.+|..|++.|.+|+|+++.+.....     .+.+...+.+.                        
T Consensus         5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g   84 (386)
T PRK07236          5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDG   84 (386)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCC
Confidence            3578999999999999999999999999999988643211     02222222221                        


Q ss_pred             -------------------HHHHh--CCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997          183 -------------------QLYQQ--NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       183 -------------------~~l~~--~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (414)
                                         +.|.+  .+++++.++++++++.++++  ..+.+.+|+++.+|.||.|-|....
T Consensus        85 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vIgADG~~S~  155 (386)
T PRK07236         85 RVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDR--VTARFADGRRETADLLVGADGGRST  155 (386)
T ss_pred             CEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCe--EEEEECCCCEEEeCEEEECCCCCch
Confidence                               11111  13568999999999865433  3578899999999999999997654

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=98.36  E-value=2.6e-06  Score=91.62  Aligned_cols=100  Identities=18%  Similarity=0.412  Sum_probs=75.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhC----CCcEEEEeeCCccc------ccccC----HHHHHHHHHHHHhCCcEEEcCceE
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGW----KLDTTIIFPENHLL------QRLFT----PSLAQRYEQLYQQNGVKFVKGASI  198 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~----g~~Vtlv~~~~~~l------~~~~~----~~~~~~~~~~l~~~gv~i~~~~~v  198 (414)
                      .++|+|||+|..|+.+|..|+++    +.+||++.+.+++.      +..+.    +++.....+.+++.||+++.++.|
T Consensus         3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V   82 (847)
T PRK14989          3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERA   82 (847)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEE
Confidence            35899999999999999999765    46899999887642      11111    122222345678899999999999


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCCh
Q 014997          199 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       199 ~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  236 (414)
                      ..+...  .+  .|.+.+|+++.+|.+|+|||.+|...
T Consensus        83 ~~Id~~--~~--~V~~~~G~~i~yD~LVIATGs~p~~p  116 (847)
T PRK14989         83 ITINRQ--EK--VIHSSAGRTVFYDKLIMATGSYPWIP  116 (847)
T ss_pred             EEEeCC--Cc--EEEECCCcEEECCEEEECCCCCcCCC
Confidence            998743  22  56778888999999999999998744

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.35  E-value=4.7e-06  Score=80.86  Aligned_cols=95  Identities=25%  Similarity=0.452  Sum_probs=70.5

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeC-Ccc-----------------------------------------c---
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHL-----------------------------------------L---  169 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~-~~~-----------------------------------------l---  169 (414)
                      .|+|||||..|||+|..+++.|.+|.++... +.+                                         +   
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s   80 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS   80 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence            4899999999999999999999999999433 111                                         0   


Q ss_pred             --c------cccC-HHHHHHHHHHHHh-CCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCC
Q 014997          170 --Q------RLFT-PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  231 (414)
Q Consensus       170 --~------~~~~-~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~  231 (414)
                        +      .+.| ....+.+.+.+++ .+++++. .+|+++.. +++++..|.+.+|+.+.+|.||+|+|.
T Consensus        81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~-~~V~~l~~-e~~~v~GV~~~~g~~~~a~~vVlaTGt  150 (392)
T PF01134_consen   81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQ-GEVTDLIV-ENGKVKGVVTKDGEEIEADAVVLATGT  150 (392)
T ss_dssp             S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEE-S-EEEEEE-CTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred             CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEE-cccceEEe-cCCeEEEEEeCCCCEEecCEEEEeccc
Confidence              0      0122 2356667777777 6899975 67999975 468899999999999999999999999

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.34  E-value=3e-06  Score=91.21  Aligned_cols=91  Identities=27%  Similarity=0.294  Sum_probs=68.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc--------ccCHHHHHHHHHHHHhCCcEEEcCceEEEEEe
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  203 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~--------~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~  203 (414)
                      .+++|+|||||+.|+.+|..|+++|.+|+++++.+.+...        .++.+....-.+.+++.||++++++.+ .+. 
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V-di~-  615 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP-DLT-  615 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee-EEE-
Confidence            4689999999999999999999999999999987654211        123344444456778899999999876 222 


Q ss_pred             cCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997          204 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       204 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (414)
                                +.+.....+|.||+|+|..+.
T Consensus       616 ----------le~L~~~gYDaVILATGA~~~  636 (1019)
T PRK09853        616 ----------VEQLKNEGYDYVVVAIGADKN  636 (1019)
T ss_pred             ----------hhhheeccCCEEEECcCCCCC
Confidence                      222334568999999999854

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=98.33  E-value=1.8e-06  Score=84.15  Aligned_cols=101  Identities=17%  Similarity=0.159  Sum_probs=69.0

Q ss_pred             cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccc--------cCHHHHHHHHHHHHhCCcEEEcCceEEEEE
Q 014997          131 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL--------FTPSLAQRYEQLYQQNGVKFVKGASIKNLE  202 (414)
Q Consensus       131 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~--------~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~  202 (414)
                      ..+++|+|||+|+.|+++|..|++.|.+|+++++.+.+....        ++.+......+.+.+.|++++.++.+..+.
T Consensus        16 ~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~~~   95 (352)
T PRK12770         16 PTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCCGE   95 (352)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcEEeecc
Confidence            357899999999999999999999999999999987654211        122333334455677799999998876553


Q ss_pred             e---cCCCcE-E-EEEeCCCcEEecCEEEEccCCc
Q 014997          203 A---GSDGRV-A-AVKLEDGSTIDADTIVIGIGAK  232 (414)
Q Consensus       203 ~---~~~~~~-~-~v~~~~g~~i~~D~vi~a~G~~  232 (414)
                      .   ..+... . .+..+ +..+.+|.||+|+|..
T Consensus        96 ~~~~~~~~~~~~~~~~~~-~~~~~~d~lviAtGs~  129 (352)
T PRK12770         96 PLHEEEGDEFVERIVSLE-ELVKKYDAVLIATGTW  129 (352)
T ss_pred             ccccccccccccccCCHH-HHHhhCCEEEEEeCCC
Confidence            2   111111 0 11111 2247899999999984

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=98.33  E-value=2.3e-05  Score=76.19  Aligned_cols=178  Identities=24%  Similarity=0.386  Sum_probs=105.0

Q ss_pred             EEecCeEEEccCCCCCCCCCC--CC-CCCCCEEEecCHHHHHHHHHh-------------hcCCCeEEEE---CCCh---
Q 014997           86 LLKYGSLIVATGCTASRFPEK--IG-GYLPGVHYIRDVADADALISS-------------LEKAKKVVVV---GGGY---  143 (414)
Q Consensus        86 ~~~yd~LviAtG~~~~~~~~~--~g-~~~~gv~~~~~~~~~~~~~~~-------------~~~~~~vvVv---GgG~---  143 (414)
                      ++..-.+|+|||-.+......  .| ...++|.+.   ...+++...             -.++|+|+.|   |+-.   
T Consensus       298 e~~vGaIIvAtGy~~~Da~~k~EyGYG~~~nVIT~---lElErml~~~GPT~GkvlrpSdg~~pKrVaFIqCVGSRD~~~  374 (622)
T COG1148         298 ELEVGAIIVATGYKPFDATRKEEYGYGKYPNVITN---LELERMLNPNGPTGGKVLRPSDGKPPKRVAFIQCVGSRDFQV  374 (622)
T ss_pred             EEEeceEEEEccccccCcchhhhcCCCCCcchhhH---HHHHHHhccCCCCCceEEecCCCCCCceEEEEEEecCcCccc
Confidence            467788999999876432211  11 113444432   223333321             1135677665   5433   


Q ss_pred             -----HHHHHHHHH------HhC--CCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEE
Q 014997          144 -----IGMEVAAAA------VGW--KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  210 (414)
Q Consensus       144 -----~g~e~A~~l------~~~--g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~  210 (414)
                           +-.-++..|      +++  ..+|+++...-|    .++...-++..+.-++.||+++.+. +.+|...+++.+ 
T Consensus       375 ~n~YCSrvCCm~slKqA~~Ike~~Pd~~v~I~YmDiR----afG~~yEefY~~~Q~~~gV~fIRGr-vaei~e~p~~~l-  448 (622)
T COG1148         375 GNPYCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIR----AFGKDYEEFYVRSQEDYGVRFIRGR-VAEIAEFPKKKL-  448 (622)
T ss_pred             CChhhHHHHHHHHHhhhhhhhhcCCCcceeEEEEEee----ccCccHHHHHHhhhhhhchhhhcCC-hHHheeCCCCee-
Confidence                 122222233      232  356777766553    3454555566665558899999874 667766666652 


Q ss_pred             EEEeCC---C--cEEecCEEEEccCCcCCCh---hhhhcCCccc-CCCEEEc-CCCC---CCCCcEEEEcccccc
Q 014997          211 AVKLED---G--STIDADTIVIGIGAKPTVS---PFERVGLNSS-VGGIQVD-GQFR---TRMPGIFAIGDVAAF  272 (414)
Q Consensus       211 ~v~~~~---g--~~i~~D~vi~a~G~~p~~~---~l~~~gl~~~-~g~i~vd-~~~~---t~~~~IyA~GD~a~~  272 (414)
                      .|...|   |  .++++|+|++++|+.|...   +.+.+||..+ +|++... +.++   |+.++||.+|-|...
T Consensus       449 ~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqgP  523 (622)
T COG1148         449 IVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQGP  523 (622)
T ss_pred             EEEEEeccCccceecccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCcccccccCCcEEEeecccCC
Confidence            333333   3  4799999999999998543   3456788764 5666654 4444   688999999977654

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=98.33  E-value=3.7e-06  Score=81.50  Aligned_cols=64  Identities=31%  Similarity=0.517  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhcCC
Q 014997          177 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL  243 (414)
Q Consensus       177 ~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl  243 (414)
                      +.+.+.+.+++.|++++.+++|+++..+ ++.+..|.+.+|+ +.+|.||+|+|.... .++...+.
T Consensus       149 l~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v~gv~~~~g~-i~ad~vV~a~G~~s~-~l~~~~~~  212 (358)
T PF01266_consen  149 LIQALAAEAQRAGVEIRTGTEVTSIDVD-GGRVTGVRTSDGE-IRADRVVLAAGAWSP-QLLPLLGL  212 (358)
T ss_dssp             HHHHHHHHHHHTT-EEEESEEEEEEEEE-TTEEEEEEETTEE-EEECEEEE--GGGHH-HHHHTTTT
T ss_pred             hhhhhHHHHHHhhhhccccccccchhhc-ccccccccccccc-cccceeEecccccce-eeeecccc
Confidence            4556666678899999999999999865 5556669999997 999999999998654 45555554

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.33  E-value=2.1e-06  Score=93.30  Aligned_cols=93  Identities=24%  Similarity=0.201  Sum_probs=72.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc--------ccCHHHHHHHHHHHHhCCcEEEcCceEEEEEe
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  203 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~--------~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~  203 (414)
                      .+++|+|||+|+.|+.+|..|+++|++||++++.+++...        .++.++.+...+.+++.||+|++|+.+..   
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~---  381 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGK---  381 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEecc---
Confidence            4799999999999999999999999999999988654221        13456666666778899999999865411   


Q ss_pred             cCCCcEEEEEeCCCcEEecCEEEEccCCc-CC
Q 014997          204 GSDGRVAAVKLEDGSTIDADTIVIGIGAK-PT  234 (414)
Q Consensus       204 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~-p~  234 (414)
                             .+.+++.....+|.|++|+|.. |.
T Consensus       382 -------dit~~~l~~~~yDAV~LAtGA~~pr  406 (944)
T PRK12779        382 -------TATLEDLKAAGFWKIFVGTGAGLPT  406 (944)
T ss_pred             -------EEeHHHhccccCCEEEEeCCCCCCC
Confidence                   3455555556799999999984 54

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.32  E-value=3.1e-05  Score=73.43  Aligned_cols=98  Identities=22%  Similarity=0.376  Sum_probs=74.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCc-EEEEeeCC-c--------------ccccccCHHHHHHHHHHHHhCCcEEEcCce
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPEN-H--------------LLQRLFTPSLAQRYEQLYQQNGVKFVKGAS  197 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~-Vtlv~~~~-~--------------~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~  197 (414)
                      ..|+|||+|+.|+-+|.++.+.+.+ +.+++... .              +-.....+++.+.+.+..+..|+++.. ..
T Consensus         4 ~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~   82 (305)
T COG0492           4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-DE   82 (305)
T ss_pred             eeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-EE
Confidence            4799999999999999999999988 44554421 1              011134567777888888888999988 66


Q ss_pred             EEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCC
Q 014997          198 IKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  235 (414)
Q Consensus       198 v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~  235 (414)
                      |.+++..++  ...|.+++|+ +.|+.||+|+|..+..
T Consensus        83 v~~v~~~~~--~F~v~t~~~~-~~ak~vIiAtG~~~~~  117 (305)
T COG0492          83 VEKVELEGG--PFKVKTDKGT-YEAKAVIIATGAGARK  117 (305)
T ss_pred             EEEEeecCc--eEEEEECCCe-EEEeEEEECcCCcccC
Confidence            777765432  5678888887 9999999999998753

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.30  E-value=3.4e-06  Score=82.20  Aligned_cols=99  Identities=23%  Similarity=0.448  Sum_probs=75.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCC--CcEEEEeeCCccccccc----------CHHHHHHHHHHHHhCC-cEEEcCceEE
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQRLF----------TPSLAQRYEQLYQQNG-VKFVKGASIK  199 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l~~~~----------~~~~~~~~~~~l~~~g-v~i~~~~~v~  199 (414)
                      .+++||+|||+.|+.+|..|.+.-  .+||+|++.+..+-..+          ..++..-+.+.+++.+ |+++.+ +|+
T Consensus         3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~-~V~   81 (405)
T COG1252           3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQG-EVT   81 (405)
T ss_pred             CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEE-EEE
Confidence            578999999999999999999874  88999999875432111          1233445667777555 999875 588


Q ss_pred             EEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCCh
Q 014997          200 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       200 ~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  236 (414)
                      +|+.+  ++  .|.+.++..+++|.+|+++|..++..
T Consensus        82 ~ID~~--~k--~V~~~~~~~i~YD~LVvalGs~~~~f  114 (405)
T COG1252          82 DIDRD--AK--KVTLADLGEISYDYLVVALGSETNYF  114 (405)
T ss_pred             EEccc--CC--EEEeCCCccccccEEEEecCCcCCcC
Confidence            88754  22  67888877899999999999998753

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.30  E-value=9.7e-06  Score=76.48  Aligned_cols=97  Identities=20%  Similarity=0.283  Sum_probs=73.3

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc---------------------------------------c----
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ---------------------------------------R----  171 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~---------------------------------------~----  171 (414)
                      .|+|||+|+.|+-+|..|++.|.+|+++++.+.+-.                                       .    
T Consensus         2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (295)
T TIGR02032         2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPIE   81 (295)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEeccC
Confidence            589999999999999999999999999998753210                                       0    


Q ss_pred             -----cc-CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeC-CCcEEecCEEEEccCCcC
Q 014997          172 -----LF-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGSTIDADTIVIGIGAKP  233 (414)
Q Consensus       172 -----~~-~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~-~g~~i~~D~vi~a~G~~p  233 (414)
                           .+ ...+.+.+.+.+++.|++++.+++++++...+++ + .+.+. ++.++.+|.||.|.|...
T Consensus        82 ~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~-~-~~~~~~~~~~~~a~~vv~a~G~~s  148 (295)
T TIGR02032        82 TELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDR-V-VVIVRGGEGTVTAKIVIGADGSRS  148 (295)
T ss_pred             CCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCE-E-EEEEcCccEEEEeCEEEECCCcch
Confidence                 01 1245566777778899999999999998755333 2 33333 345799999999999864

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.29  E-value=2.5e-06  Score=86.14  Aligned_cols=90  Identities=22%  Similarity=0.302  Sum_probs=69.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc-------c-ccCHHHHHHHHHHHHhCCcEEEcCceEEEEEe
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------R-LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  203 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-------~-~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~  203 (414)
                      .+++|+|||+|+.|+++|..|+++|.+|+++++.+.+..       . .++.++.....+.+++.||++++++.+..   
T Consensus       139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~---  215 (457)
T PRK11749        139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGR---  215 (457)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECC---
Confidence            468999999999999999999999999999998876521       1 13556677777888999999999886521   


Q ss_pred             cCCCcEEEEEeCCCcEEecCEEEEccCCc
Q 014997          204 GSDGRVAAVKLEDGSTIDADTIVIGIGAK  232 (414)
Q Consensus       204 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~  232 (414)
                             .+.+++.. +.+|.||+|+|..
T Consensus       216 -------~v~~~~~~-~~~d~vvlAtGa~  236 (457)
T PRK11749        216 -------DITLDELR-AGYDAVFIGTGAG  236 (457)
T ss_pred             -------ccCHHHHH-hhCCEEEEccCCC
Confidence                   12233333 7899999999985

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.28  E-value=6.3e-06  Score=82.79  Aligned_cols=100  Identities=14%  Similarity=0.157  Sum_probs=68.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhC--CCcEEEEeeCCccccc--ccCHH-------HHHHH----HHHHHhCCcEEEcCceE
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQR--LFTPS-------LAQRY----EQLYQQNGVKFVKGASI  198 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~l~~--~~~~~-------~~~~~----~~~l~~~gv~i~~~~~v  198 (414)
                      ++|+|||||+.|+.+|..|+++  +.+|+++++.+.+.-.  .++.-       ....+    ....++.||+++.+++|
T Consensus         2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~V   81 (438)
T PRK13512          2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHEV   81 (438)
T ss_pred             CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCEE
Confidence            4799999999999999999877  5789999998643211  01110       11111    23335679999999999


Q ss_pred             EEEEecCCCcEEEEEeCC-Cc--EEecCEEEEccCCcCCC
Q 014997          199 KNLEAGSDGRVAAVKLED-GS--TIDADTIVIGIGAKPTV  235 (414)
Q Consensus       199 ~~i~~~~~~~~~~v~~~~-g~--~i~~D~vi~a~G~~p~~  235 (414)
                      .+|+.+  .+...+...+ ++  ++.+|.+|+|+|.+|+.
T Consensus        82 ~~Id~~--~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~  119 (438)
T PRK13512         82 IAINDE--RQTVTVLNRKTNEQFEESYDKLILSPGASANS  119 (438)
T ss_pred             EEEECC--CCEEEEEECCCCcEEeeecCEEEECCCCCCCC
Confidence            999754  2322233222 22  47899999999999864

>PRK06834 hypothetical protein; Provisional

Probab=98.26  E-value=1.3e-05  Score=81.63  Aligned_cols=107  Identities=23%  Similarity=0.366  Sum_probs=78.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc---ccc--------------------------------------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---QRL--------------------------------------  172 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l---~~~--------------------------------------  172 (414)
                      ..|+|||+|+.|+-+|..|++.|.+|+++++.+...   ++.                                      
T Consensus         4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~   83 (488)
T PRK06834          4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRLD   83 (488)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEecc
Confidence            579999999999999999999999999999763210   000                                      


Q ss_pred             ---c-----------CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhh
Q 014997          173 ---F-----------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF  238 (414)
Q Consensus       173 ---~-----------~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l  238 (414)
                         +           ...+.+.+.+.+++.|++++.++++++++.++++  ..+.+.+|+++.+|.||.|.|..+..  -
T Consensus        84 ~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~--v~v~~~~g~~i~a~~vVgADG~~S~v--R  159 (488)
T PRK06834         84 ISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTG--VDVELSDGRTLRAQYLVGCDGGRSLV--R  159 (488)
T ss_pred             cccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCe--EEEEECCCCEEEeCEEEEecCCCCCc--H
Confidence               0           0122334555667789999999999999865443  24667788889999999999998753  2


Q ss_pred             hhcCCc
Q 014997          239 ERVGLN  244 (414)
Q Consensus       239 ~~~gl~  244 (414)
                      +..|+.
T Consensus       160 ~~lgi~  165 (488)
T PRK06834        160 KAAGID  165 (488)
T ss_pred             hhcCCC
Confidence            344444

>PRK07045 putative monooxygenase; Reviewed

Probab=98.25  E-value=1.6e-05  Score=78.54  Aligned_cols=101  Identities=22%  Similarity=0.280  Sum_probs=76.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc-------------------------------------------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------------------------------------------  170 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------------------  170 (414)
                      -+|+|||||+.|+-+|..|++.|.+|+++++.+.+-.                                           
T Consensus         6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~   85 (388)
T PRK07045          6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDKEL   85 (388)
T ss_pred             eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCCcE
Confidence            4799999999999999999999999999997642200                                           


Q ss_pred             --cc-------cC-------HHHHHHHHHHHH-hCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcC
Q 014997          171 --RL-------FT-------PSLAQRYEQLYQ-QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  233 (414)
Q Consensus       171 --~~-------~~-------~~~~~~~~~~l~-~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p  233 (414)
                        ..       .+       ..+.+.+.+.+. ..|++++++++++.++.++++.+..|.+++|+++.+|.||-|.|...
T Consensus        86 ~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S  165 (388)
T PRK07045         86 IASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARS  165 (388)
T ss_pred             EEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCCh
Confidence              00       00       012233333443 35799999999999987766665678889999999999999999875


Q ss_pred             C
Q 014997          234 T  234 (414)
Q Consensus       234 ~  234 (414)
                      .
T Consensus       166 ~  166 (388)
T PRK07045        166 M  166 (388)
T ss_pred             H
Confidence            4

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.25  E-value=1.2e-05  Score=79.47  Aligned_cols=108  Identities=27%  Similarity=0.358  Sum_probs=78.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc-------------c-c-----------------c----------
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL-------------L-Q-----------------R----------  171 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~-------------l-~-----------------~----------  171 (414)
                      ..+|+|||||+.|+-+|..|++.|.+|+++++.+..             + +                 .          
T Consensus         6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~   85 (392)
T PRK08773          6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMRV   85 (392)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEEE
Confidence            457999999999999999999999999999985311             0 0                 0          


Q ss_pred             ---------cc-----C----------HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEE
Q 014997          172 ---------LF-----T----------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI  227 (414)
Q Consensus       172 ---------~~-----~----------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~  227 (414)
                               .+     +          ..+.+.+.+.+++.|++++.++++++++.++++ + .+++++|+++.+|.||.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~-v-~v~~~~g~~~~a~~vV~  163 (392)
T PRK08773         86 WDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADR-V-RLRLDDGRRLEAALAIA  163 (392)
T ss_pred             EeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCe-E-EEEECCCCEEEeCEEEE
Confidence                     00     0          122344555567789999999999999865433 3 47788888999999999


Q ss_pred             ccCCcCCChhhhhcCCc
Q 014997          228 GIGAKPTVSPFERVGLN  244 (414)
Q Consensus       228 a~G~~p~~~~l~~~gl~  244 (414)
                      |.|..+.  +.+..++.
T Consensus       164 AdG~~S~--vr~~~g~~  178 (392)
T PRK08773        164 ADGAAST--LRELAGLP  178 (392)
T ss_pred             ecCCCch--HHHhhcCC
Confidence            9999874  33334443

>PLN02463 lycopene beta cyclase

Probab=98.24  E-value=1.2e-05  Score=80.58  Aligned_cols=98  Identities=26%  Similarity=0.327  Sum_probs=73.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc-cccc---------------------------------------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-QRLF---------------------------------------  173 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-~~~~---------------------------------------  173 (414)
                      -+|+|||||+.|+.+|..|++.|.+|.++++.+... ++..                                       
T Consensus        29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~y  108 (447)
T PLN02463         29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRPY  108 (447)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCcc
Confidence            479999999999999999999999999999864211 1000                                       


Q ss_pred             ----CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997          174 ----TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       174 ----~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (414)
                          ...+.+.+.+.+.+.|++++ ..+|++++..+++  ..|.+++|+++.||.||.|+|..+.
T Consensus       109 ~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~--~~V~~~dG~~i~A~lVI~AdG~~s~  170 (447)
T PLN02463        109 GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESK--SLVVCDDGVKIQASLVLDATGFSRC  170 (447)
T ss_pred             eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCe--EEEEECCCCEEEcCEEEECcCCCcC
Confidence                01223445555677899997 4688898865333  3678889989999999999998764

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.23  E-value=1.2e-05  Score=79.09  Aligned_cols=98  Identities=16%  Similarity=0.308  Sum_probs=69.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhCC--CcEEEEeeCCccc-cc-ccC---------HHHHH-HHHHHHHhCCcEEEcCceEE
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLL-QR-LFT---------PSLAQ-RYEQLYQQNGVKFVKGASIK  199 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l-~~-~~~---------~~~~~-~~~~~l~~~gv~i~~~~~v~  199 (414)
                      ++++|||+|+.|+.+|..|++++  .+||++.+.+... .+ .+.         .++.. ...+.+++.||+++.++.|+
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~   82 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWVT   82 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEEE
Confidence            58999999999999999998764  6799998776421 11 111         11111 13345677899999999999


Q ss_pred             EEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCCh
Q 014997          200 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       200 ~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  236 (414)
                      +++..  .+  .+.+ ++..+.+|.+|+|+|.+|...
T Consensus        83 ~id~~--~~--~v~~-~~~~~~yd~LVlATG~~~~~p  114 (377)
T PRK04965         83 DIDAE--AQ--VVKS-QGNQWQYDKLVLATGASAFVP  114 (377)
T ss_pred             EEECC--CC--EEEE-CCeEEeCCEEEECCCCCCCCC
Confidence            99753  22  3444 566899999999999998643

>PRK10262 thioredoxin reductase; Provisional

Probab=98.22  E-value=2.1e-05  Score=75.58  Aligned_cols=100  Identities=19%  Similarity=0.275  Sum_probs=69.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC---cc--------ccc----ccCHHHHHHHHHHHHhCCcEEEcCc
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN---HL--------LQR----LFTPSLAQRYEQLYQQNGVKFVKGA  196 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~---~~--------l~~----~~~~~~~~~~~~~l~~~gv~i~~~~  196 (414)
                      +.++|+|||||+.|+.+|..|+++|.++++++...   .+        ++.    ...+.+.+.+.+.....++++..+ 
T Consensus         5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   83 (321)
T PRK10262          5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD-   83 (321)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEee-
Confidence            56889999999999999999999999999887431   11        010    112345666777777788888775 


Q ss_pred             eEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCC
Q 014997          197 SIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  235 (414)
Q Consensus       197 ~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~  235 (414)
                      .+..++.. ++. ..+..++ ..+.+|.||+|+|..|..
T Consensus        84 ~v~~v~~~-~~~-~~v~~~~-~~~~~d~vilAtG~~~~~  119 (321)
T PRK10262         84 HINKVDLQ-NRP-FRLTGDS-GEYTCDALIIATGASARY  119 (321)
T ss_pred             EEEEEEec-CCe-EEEEecC-CEEEECEEEECCCCCCCC
Confidence            46667643 222 2333333 368999999999999863

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.21  E-value=1.2e-05  Score=81.05  Aligned_cols=95  Identities=25%  Similarity=0.420  Sum_probs=67.2

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccccc-----------------------------------C-----
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLF-----------------------------------T-----  174 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~-----------------------------------~-----  174 (414)
                      .++|||+|+.|+.+|..++++|.+|+++++. .+-..+.                                   +     
T Consensus         4 DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~   82 (446)
T TIGR01424         4 DLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKKLL   82 (446)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHHHH
Confidence            6899999999999999999999999999974 2211100                                   0     


Q ss_pred             -------HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCCh
Q 014997          175 -------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       175 -------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  236 (414)
                             ..+.+.+++.+++.||+++.+ ++..+..   ..+ .+ ..+|+++.+|.+|+|||.+|...
T Consensus        83 ~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v~~---~~v-~v-~~~g~~~~~d~lIiATGs~p~~p  145 (446)
T TIGR01424        83 QKKDDEIARLSGLYKRLLANAGVELLEG-RARLVGP---NTV-EV-LQDGTTYTAKKILIAVGGRPQKP  145 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecC---CEE-EE-ecCCeEEEcCEEEEecCCcCCCC
Confidence                   012334556677889999876 4555532   121 22 24677899999999999998643

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=98.20  E-value=4.3e-06  Score=84.17  Aligned_cols=92  Identities=22%  Similarity=0.235  Sum_probs=69.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc-------c-cccCHHHHHHHHHHHHhCCcEEEcCceEEEEEe
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------Q-RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  203 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------~-~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~  203 (414)
                      .+++|+|||+|+.|+++|..|+++|.+|+++++.+.+.       + ..+++++.....+.+++.||++++++.+..   
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~---  208 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVGK---  208 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccCC---
Confidence            45789999999999999999999999999999876541       1 014556666666778899999999875410   


Q ss_pred             cCCCcEEEEEeCCCcEEecCEEEEccCC-cCC
Q 014997          204 GSDGRVAAVKLEDGSTIDADTIVIGIGA-KPT  234 (414)
Q Consensus       204 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~-~p~  234 (414)
                             .+.+.+. ...+|.||+|+|. .|.
T Consensus       209 -------~v~~~~~-~~~yd~viiAtGa~~p~  232 (449)
T TIGR01316       209 -------TATLEEL-FSQYDAVFIGTGAGLPK  232 (449)
T ss_pred             -------cCCHHHH-HhhCCEEEEeCCCCCCC
Confidence                   2333333 3469999999997 564

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK08163 salicylate hydroxylase; Provisional

Probab=98.19  E-value=2.2e-05  Score=77.71  Aligned_cols=100  Identities=19%  Similarity=0.272  Sum_probs=73.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc----------------------c------------c------
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------R------------L------  172 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~----------------------~------------~------  172 (414)
                      ..+|+|||||+.|+-+|..|++.|.+|+++++.+.+..                      .            .      
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~   83 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVDA   83 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCCC
Confidence            46899999999999999999999999999998743210                      0            0      


Q ss_pred             -------cC----------------HHHHHHHHHHHHhC-CcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEc
Q 014997          173 -------FT----------------PSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG  228 (414)
Q Consensus       173 -------~~----------------~~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a  228 (414)
                             ++                .++.+.+.+.+.+. +++++.+++++++..++++ + .+.+.+|+++.+|.||.|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~-v-~v~~~~g~~~~ad~vV~A  161 (396)
T PRK08163         84 EEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDG-V-TVFDQQGNRWTGDALIGC  161 (396)
T ss_pred             CEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCc-e-EEEEcCCCEEecCEEEEC
Confidence                   00                01122334444444 5999999999999854333 3 577888889999999999


Q ss_pred             cCCcCC
Q 014997          229 IGAKPT  234 (414)
Q Consensus       229 ~G~~p~  234 (414)
                      .|....
T Consensus       162 dG~~S~  167 (396)
T PRK08163        162 DGVKSV  167 (396)
T ss_pred             CCcChH
Confidence            998754

>PRK12831 putative oxidoreductase; Provisional

Probab=98.18  E-value=5.4e-06  Score=83.73  Aligned_cols=93  Identities=24%  Similarity=0.315  Sum_probs=67.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc-------cc-ccCH-HHHHHHHHHHHhCCcEEEcCceEEEEE
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------QR-LFTP-SLAQRYEQLYQQNGVKFVKGASIKNLE  202 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------~~-~~~~-~~~~~~~~~l~~~gv~i~~~~~v~~i~  202 (414)
                      .+++|+|||+|+.|+.+|..|+++|.+|+++++.+.+.       +. .++. ++.....+.+++.||++++++.+..  
T Consensus       139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~~--  216 (464)
T PRK12831        139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVGK--  216 (464)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEECC--
Confidence            46899999999999999999999999999999865431       11 0222 2555556778889999999985521  


Q ss_pred             ecCCCcEEEEEeCCC-cEEecCEEEEccCC-cCC
Q 014997          203 AGSDGRVAAVKLEDG-STIDADTIVIGIGA-KPT  234 (414)
Q Consensus       203 ~~~~~~~~~v~~~~g-~~i~~D~vi~a~G~-~p~  234 (414)
                              .+.+++. +.+.+|.||+|+|. .|.
T Consensus       217 --------~v~~~~~~~~~~~d~viiAtGa~~~~  242 (464)
T PRK12831        217 --------TVTIDELLEEEGFDAVFIGSGAGLPK  242 (464)
T ss_pred             --------cCCHHHHHhccCCCEEEEeCCCCCCC
Confidence                    1223332 24679999999998 464

>PRK08244 hypothetical protein; Provisional

Probab=98.17  E-value=2.3e-05  Score=79.98  Aligned_cols=101  Identities=22%  Similarity=0.333  Sum_probs=73.7

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc-------------------------------------------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------------------------------------------  170 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------------------  170 (414)
                      ..|+|||+|+.|+-+|..|++.|.+|+|+++.+.+..                                           
T Consensus         3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~   82 (493)
T PRK08244          3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTRL   82 (493)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccccC
Confidence            4699999999999999999999999999998632100                                           


Q ss_pred             c------------ccC-HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCC-cEEecCEEEEccCCcCC
Q 014997          171 R------------LFT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-STIDADTIVIGIGAKPT  234 (414)
Q Consensus       171 ~------------~~~-~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g-~~i~~D~vi~a~G~~p~  234 (414)
                      .            .++ ..+.+.+.+.+++.|++++.++++++++.++++....+...+| +++.+|.||.|.|....
T Consensus        83 ~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~  160 (493)
T PRK08244         83 DFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSI  160 (493)
T ss_pred             CcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChH
Confidence            0            000 1234555666677899999999999998654443222333356 47999999999998764

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.15  E-value=2.5e-05  Score=77.43  Aligned_cols=106  Identities=26%  Similarity=0.429  Sum_probs=77.7

Q ss_pred             eEEEECCChHHHHHHHHHHhCC--CcEEEEeeCCccc----------------------------c--------------
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLL----------------------------Q--------------  170 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l----------------------------~--------------  170 (414)
                      +|+|||||+.|+-+|..|++.|  .+|+++++.+...                            .              
T Consensus         3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~   82 (403)
T PRK07333          3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDSR   82 (403)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeCC
Confidence            5899999999999999999985  8999999763210                            0              


Q ss_pred             ------c---cc---------------CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEE
Q 014997          171 ------R---LF---------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV  226 (414)
Q Consensus       171 ------~---~~---------------~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi  226 (414)
                            .   .+               ...+.+.+.+.+++.|++++.+++|++++.++++  ..+.+++|+++.||.||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vI  160 (403)
T PRK07333         83 TSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEG--VTVTLSDGSVLEARLLV  160 (403)
T ss_pred             CCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCE--EEEEECCCCEEEeCEEE
Confidence                  0   00               0123445566667789999999999999765333  35778888899999999


Q ss_pred             EccCCcCCChhhhhcCCc
Q 014997          227 IGIGAKPTVSPFERVGLN  244 (414)
Q Consensus       227 ~a~G~~p~~~~l~~~gl~  244 (414)
                      .|.|....  +.+..++.
T Consensus       161 ~AdG~~S~--vr~~~g~~  176 (403)
T PRK07333        161 AADGARSK--LRELAGIK  176 (403)
T ss_pred             EcCCCChH--HHHHcCCC
Confidence            99998764  34444554

>PRK07588 hypothetical protein; Provisional

Probab=98.15  E-value=2.5e-05  Score=77.21  Aligned_cols=98  Identities=24%  Similarity=0.272  Sum_probs=71.0

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc---------c----------------------------------
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ---------R----------------------------------  171 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~---------~----------------------------------  171 (414)
                      +|+|||||+.|+-+|..|++.|.+|+++++.+.+-.         .                                  
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~~   81 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRRK   81 (391)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCEE
Confidence            689999999999999999999999999997643210         0                                  


Q ss_pred             -ccC-----------------HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcC
Q 014997          172 -LFT-----------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  233 (414)
Q Consensus       172 -~~~-----------------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p  233 (414)
                       .++                 ..+.+.+.+.+ ..|++++++++|++++..+++ + .+.+++|+++.+|+||-|-|...
T Consensus        82 ~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~-~~~v~i~~~~~v~~i~~~~~~-v-~v~~~~g~~~~~d~vIgADG~~S  158 (391)
T PRK07588         82 ADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAI-DGQVETIFDDSIATIDEHRDG-V-RVTFERGTPRDFDLVIGADGLHS  158 (391)
T ss_pred             EEecHHHccccCCCceEEEEHHHHHHHHHHhh-hcCeEEEeCCEEeEEEECCCe-E-EEEECCCCEEEeCEEEECCCCCc
Confidence             000                 00111222222 347999999999999865443 3 57888999999999999999865


Q ss_pred             CC
Q 014997          234 TV  235 (414)
Q Consensus       234 ~~  235 (414)
                      ..
T Consensus       159 ~v  160 (391)
T PRK07588        159 HV  160 (391)
T ss_pred             cc
Confidence            43

>PLN02852 ferredoxin-NADP+ reductase

Probab=98.14  E-value=7.6e-06  Score=82.46  Aligned_cols=92  Identities=18%  Similarity=0.210  Sum_probs=67.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHh--CCCcEEEEeeCCcccccc---------cCHHHHHHHHHHHHhCCcEEEcCceEEE
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVG--WKLDTTIIFPENHLLQRL---------FTPSLAQRYEQLYQQNGVKFVKGASIKN  200 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~~l~~~---------~~~~~~~~~~~~l~~~gv~i~~~~~v~~  200 (414)
                      .+++|+|||+|+.|+.+|..|++  .|.+|+|+++.+.+....         ....+...+.+.+++.+|+++.+..+..
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg~  104 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLGR  104 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEECc
Confidence            46899999999999999999986  799999999988653210         1123444566777888999998765521


Q ss_pred             EEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997          201 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       201 i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (414)
                                .+.+++-. ..+|.||+|+|..+.
T Consensus       105 ----------dvtl~~L~-~~yDaVIlAtGa~~~  127 (491)
T PLN02852        105 ----------DVSLSELR-DLYHVVVLAYGAESD  127 (491)
T ss_pred             ----------cccHHHHh-hhCCEEEEecCCCCC
Confidence                      23333332 469999999999763

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=98.14  E-value=4e-05  Score=76.75  Aligned_cols=107  Identities=21%  Similarity=0.371  Sum_probs=76.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc--------------cc--------------------------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------------LF--------------------------  173 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~--------------~~--------------------------  173 (414)
                      -.|+|||+|+.|+-+|..|++.|.+|.++++.+.+..+              .+                          
T Consensus         6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (428)
T PRK10157          6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSA   85 (428)
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCCCc
Confidence            47999999999999999999999999999986422100              00                          


Q ss_pred             ---------------------CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCc
Q 014997          174 ---------------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  232 (414)
Q Consensus       174 ---------------------~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~  232 (414)
                                           -..+.+++.+..++.|++++.++.|+++... ++.+..+. .+|.++.||.||.|.|..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~-~g~v~~v~-~~g~~i~A~~VI~A~G~~  163 (428)
T PRK10157         86 MTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQR-DGKVVGVE-ADGDVIEAKTVILADGVN  163 (428)
T ss_pred             eeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEe-CCEEEEEE-cCCcEEECCEEEEEeCCC
Confidence                                 0012234556667789999999999998754 44443343 566789999999999984


Q ss_pred             CCChhhhhcCCc
Q 014997          233 PTVSPFERVGLN  244 (414)
Q Consensus       233 p~~~~l~~~gl~  244 (414)
                      .  .+.+..++.
T Consensus       164 s--~l~~~lgl~  173 (428)
T PRK10157        164 S--ILAEKLGMA  173 (428)
T ss_pred             H--HHHHHcCCC
Confidence            3  445555554

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=98.13  E-value=3.3e-05  Score=75.94  Aligned_cols=67  Identities=21%  Similarity=0.350  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcE-EecCEEEEccCCcCCChhhhhcCCcc
Q 014997          177 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST-IDADTIVIGIGAKPTVSPFERVGLNS  245 (414)
Q Consensus       177 ~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~-i~~D~vi~a~G~~p~~~~l~~~gl~~  245 (414)
                      +...+.+.+.++|++++++++|+.++..++| +..+.+.+|++ ++|+.||.|.|.... .+++..|++.
T Consensus       155 ~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~~g~~~~~ak~Vin~AGl~Ad-~la~~~g~~~  222 (429)
T COG0579         155 LTRALAEEAQANGVELRLNTEVTGIEKQSDG-VFVLNTSNGEETLEAKFVINAAGLYAD-PLAQMAGIPE  222 (429)
T ss_pred             HHHHHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEEEecCCcEEEEeeEEEECCchhHH-HHHHHhCCCc
Confidence            4555666778889999999999999987665 55778888876 999999999998875 6777777665

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.13  E-value=3e-05  Score=80.16  Aligned_cols=97  Identities=29%  Similarity=0.430  Sum_probs=73.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc------------cc---ccCHHHHHHHHHHHHhCCcEEEcCceE
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL------------QR---LFTPSLAQRYEQLYQQNGVKFVKGASI  198 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l------------~~---~~~~~~~~~~~~~l~~~gv~i~~~~~v  198 (414)
                      ..|+|||||+.|+.+|..|++.|.+|+++++.. +.            +.   ...+++.+.+.+.+++.|++++ +..|
T Consensus         5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~-~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V   82 (555)
T TIGR03143         5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-FGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL-QAEV   82 (555)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-ccEE
Confidence            579999999999999999999999999999753 21            00   0123566677777888899986 5678


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCC
Q 014997          199 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  235 (414)
Q Consensus       199 ~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~  235 (414)
                      ..+...  +....+.+.++ .+.+|.+|+|+|..|..
T Consensus        83 ~~i~~~--~~~~~V~~~~g-~~~a~~lVlATGa~p~~  116 (555)
T TIGR03143        83 LDVDFD--GDIKTIKTARG-DYKTLAVLIATGASPRK  116 (555)
T ss_pred             EEEEec--CCEEEEEecCC-EEEEeEEEECCCCccCC
Confidence            888743  23335666665 58999999999998864

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=98.12  E-value=1.4e-05  Score=81.29  Aligned_cols=88  Identities=19%  Similarity=0.262  Sum_probs=67.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEE
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  211 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~  211 (414)
                      .+++|+|+|+|.+|+++|..|+++|.+|+++++.+.        .....+.+.+++.||+++++..+.            
T Consensus        15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~--------~~~~~~~~~l~~~gv~~~~~~~~~------------   74 (480)
T PRK01438         15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD--------ERHRALAAILEALGATVRLGPGPT------------   74 (480)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch--------hhhHHHHHHHHHcCCEEEECCCcc------------
Confidence            578999999999999999999999999999986642        223345566888999998875432            


Q ss_pred             EEeCCCcEEecCEEEEccCCcCCChhh---hhcCCcc
Q 014997          212 VKLEDGSTIDADTIVIGIGAKPTVSPF---ERVGLNS  245 (414)
Q Consensus       212 v~~~~g~~i~~D~vi~a~G~~p~~~~l---~~~gl~~  245 (414)
                            ....+|+||+++|..|+.+++   ++.|++.
T Consensus        75 ------~~~~~D~Vv~s~Gi~~~~~~~~~a~~~gi~v  105 (480)
T PRK01438         75 ------LPEDTDLVVTSPGWRPDAPLLAAAADAGIPV  105 (480)
T ss_pred             ------ccCCCCEEEECCCcCCCCHHHHHHHHCCCee
Confidence                  124589999999999998864   3445443

>PRK07190 hypothetical protein; Provisional

Probab=98.11  E-value=6.9e-05  Score=76.17  Aligned_cols=98  Identities=19%  Similarity=0.341  Sum_probs=73.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc----------------------------------------ccc-
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL----------------------------------------QRL-  172 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l----------------------------------------~~~-  172 (414)
                      ..|+|||+|++|+-+|..|++.|.+|.++++.+.+.                                        ... 
T Consensus         6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~i   85 (487)
T PRK07190          6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKFI   85 (487)
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCceE
Confidence            479999999999999999999999999999773210                                        000 


Q ss_pred             ---------cC------------HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCC
Q 014997          173 ---------FT------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  231 (414)
Q Consensus       173 ---------~~------------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~  231 (414)
                               +.            ..+...+.+.+++.|++++.++++++++.++++.  .+.+.+|+++.|+.||.|.|.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v--~v~~~~g~~v~a~~vVgADG~  163 (487)
T PRK07190         86 SRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGC--LTTLSNGERIQSRYVIGADGS  163 (487)
T ss_pred             eeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCee--EEEECCCcEEEeCEEEECCCC
Confidence                     00            0122334455677899999999999998765543  345677888999999999998


Q ss_pred             cC
Q 014997          232 KP  233 (414)
Q Consensus       232 ~p  233 (414)
                      +.
T Consensus       164 ~S  165 (487)
T PRK07190        164 RS  165 (487)
T ss_pred             CH
Confidence            54

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=98.11  E-value=9.4e-06  Score=82.11  Aligned_cols=92  Identities=17%  Similarity=0.324  Sum_probs=69.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc-------c-cccCHHHHHHHHHHHHhCCcEEEcCceEEEEEe
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------Q-RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  203 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------~-~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~  203 (414)
                      .+++|+|||+|+.|+.+|..|+++|.+|+++++.+.+.       + ..++.++.....+.+++.|++++.++.+...  
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~--  217 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD--  217 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc--
Confidence            46899999999999999999999999999999887542       1 1135566666667889999999999866211  


Q ss_pred             cCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997          204 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       204 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (414)
                              +.+++ ....+|.||+|+|..+.
T Consensus       218 --------~~~~~-~~~~~D~vilAtGa~~~  239 (467)
T TIGR01318       218 --------ISLDD-LLEDYDAVFLGVGTYRS  239 (467)
T ss_pred             --------cCHHH-HHhcCCEEEEEeCCCCC
Confidence                    11111 12469999999999874

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK06116 glutathione reductase; Validated

Probab=98.11  E-value=1.9e-05  Score=79.62  Aligned_cols=94  Identities=26%  Similarity=0.458  Sum_probs=65.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc-----cc-------------------------------C-H-
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----LF-------------------------------T-P-  175 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----~~-------------------------------~-~-  175 (414)
                      -.++|||+|+.|+.+|..|+++|.+|+++++. .+...     +.                               + . 
T Consensus         5 ~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   83 (450)
T PRK06116          5 YDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDWAK   83 (450)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCHHH
Confidence            46999999999999999999999999999975 22000     00                               0 0 


Q ss_pred             ----------HHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCCh
Q 014997          176 ----------SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       176 ----------~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  236 (414)
                                .+.+.+.+.+++.||+++.+. +..+..   .   .|.+ +|+++.+|.+|+|||.+|...
T Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~-~~~v~~---~---~v~~-~g~~~~~d~lViATGs~p~~p  146 (450)
T PRK06116         84 LIANRDAYIDRLHGSYRNGLENNGVDLIEGF-ARFVDA---H---TVEV-NGERYTADHILIATGGRPSIP  146 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEccC---C---EEEE-CCEEEEeCEEEEecCCCCCCC
Confidence                      011223344667899999874 444431   2   4455 677899999999999998644

>PRK05868 hypothetical protein; Validated

Probab=98.10  E-value=3.7e-05  Score=75.55  Aligned_cols=100  Identities=23%  Similarity=0.235  Sum_probs=71.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc-------------------------------------------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------------------------------------------  170 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------------------  170 (414)
                      ++|+|||||+.|+.+|..|++.|.+|+++++.+.+..                                           
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~   81 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE   81 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence            4799999999999999999999999999997732200                                           


Q ss_pred             --cccC-H----H--------HHHHHHHHHH---hCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCc
Q 014997          171 --RLFT-P----S--------LAQRYEQLYQ---QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  232 (414)
Q Consensus       171 --~~~~-~----~--------~~~~~~~~l~---~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~  232 (414)
                        .... .    .        ....+.+.+.   ..|+++++++++++++.+++ . ..+.+.+|+++.+|+||-|-|..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~-~-v~v~~~dg~~~~adlvIgADG~~  159 (372)
T PRK05868         82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGD-S-VRVTFERAAAREFDLVIGADGLH  159 (372)
T ss_pred             EeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCC-e-EEEEECCCCeEEeCEEEECCCCC
Confidence              0000 0    0        0112223222   35899999999999975433 2 35788999999999999999986


Q ss_pred             CCC
Q 014997          233 PTV  235 (414)
Q Consensus       233 p~~  235 (414)
                      ...
T Consensus       160 S~v  162 (372)
T PRK05868        160 SNV  162 (372)
T ss_pred             chH
Confidence            543

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.10  E-value=3.8e-05  Score=76.35  Aligned_cols=99  Identities=19%  Similarity=0.339  Sum_probs=73.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc----------c--------------c------cc-----c------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH----------L--------------L------QR-----L------  172 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~----------~--------------l------~~-----~------  172 (414)
                      .+|+|||||+.|+-+|..|++.|.+|+++++.+.          .              +      +.     .      
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~   82 (405)
T PRK05714          3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSEM   82 (405)
T ss_pred             ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccceeE
Confidence            4699999999999999999999999999997641          0              0      00     0      


Q ss_pred             ------------cC---------------HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEE
Q 014997          173 ------------FT---------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTI  225 (414)
Q Consensus       173 ------------~~---------------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~v  225 (414)
                                  ++               ..+.+.+.+.+++.|++++.++++.+++.++++  ..|.+.+|+++.+|.|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~v~~~~g~~~~a~~v  160 (405)
T PRK05714         83 QVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDD--WLLTLADGRQLRAPLV  160 (405)
T ss_pred             EEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe--EEEEECCCCEEEeCEE
Confidence                        00               011223344456678999999999999865444  2577888989999999


Q ss_pred             EEccCCcCC
Q 014997          226 VIGIGAKPT  234 (414)
Q Consensus       226 i~a~G~~p~  234 (414)
                      |.|.|....
T Consensus       161 VgAdG~~S~  169 (405)
T PRK05714        161 VAADGANSA  169 (405)
T ss_pred             EEecCCCch
Confidence            999998654

>PTZ00188 adrenodoxin reductase; Provisional

Probab=98.09  E-value=1.9e-05  Score=78.73  Aligned_cols=92  Identities=12%  Similarity=0.189  Sum_probs=62.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHH-hCCCcEEEEeeCCcccccc---cC------HHHHHHHHHHHHhCCcEEEcCceEEEE
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAV-GWKLDTTIIFPENHLLQRL---FT------PSLAQRYEQLYQQNGVKFVKGASIKNL  201 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~-~~g~~Vtlv~~~~~~l~~~---~~------~~~~~~~~~~l~~~gv~i~~~~~v~~i  201 (414)
                      .+++|+|||+|+.|+.+|..|. +.|++|+++++.+.+..-.   ..      +.+...+.+.+...+++++.+..+-. 
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG~-  116 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVGV-  116 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEecC-
Confidence            5689999999999999999764 6799999999998763210   11      23444555556667888885543311 


Q ss_pred             EecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997          202 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       202 ~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (414)
                               .+..++= .-.+|.||+|+|..+.
T Consensus       117 ---------Dvt~eeL-~~~YDAVIlAtGA~~l  139 (506)
T PTZ00188        117 ---------DLKMEEL-RNHYNCVIFCCGASEV  139 (506)
T ss_pred             ---------ccCHHHH-HhcCCEEEEEcCCCCC
Confidence                     1111111 2368999999998853

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=98.09  E-value=3.9e-05  Score=77.18  Aligned_cols=57  Identities=32%  Similarity=0.588  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997          177 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       177 ~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (414)
                      +.+.+.+..+++||+++.++ |..+..+++|.+..|.+++|+++.+|.+|-|+|++..
T Consensus       156 fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~  212 (454)
T PF04820_consen  156 FDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL  212 (454)
T ss_dssp             HHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred             HHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence            55677777888999999885 7777767788899999999999999999999998754

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=98.09  E-value=4.3e-05  Score=75.20  Aligned_cols=97  Identities=21%  Similarity=0.338  Sum_probs=71.8

Q ss_pred             eEEEECCChHHHHHHHHHHhCC-CcEEEEeeCCccccc--------ccC-------------------------------
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHLLQR--------LFT-------------------------------  174 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~~l~~--------~~~-------------------------------  174 (414)
                      .|+|||+|+.|+-+|..|++.| .+|+++++.+.+-..        .+.                               
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~   80 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ   80 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence            4899999999999999999999 999999976321000        000                               


Q ss_pred             ------------------------HHHHHHHHHHHHh-CCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEcc
Q 014997          175 ------------------------PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI  229 (414)
Q Consensus       175 ------------------------~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~  229 (414)
                                              ..+.+.+.+.+.+ .|++++.+++++++..++++  ..+.+++|+++.||.||.|.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vV~Ad  158 (382)
T TIGR01984        81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY--VRVTLDNGQQLRAKLLIAAD  158 (382)
T ss_pred             CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe--EEEEECCCCEEEeeEEEEec
Confidence                                    1123334444555 49999999999999765443  25677888889999999999


Q ss_pred             CCcC
Q 014997          230 GAKP  233 (414)
Q Consensus       230 G~~p  233 (414)
                      |...
T Consensus       159 G~~S  162 (382)
T TIGR01984       159 GANS  162 (382)
T ss_pred             CCCh
Confidence            9764

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.08  E-value=9.4e-05  Score=65.10  Aligned_cols=138  Identities=22%  Similarity=0.340  Sum_probs=87.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc----------cccc---------------------------CH
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL----------QRLF---------------------------TP  175 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l----------~~~~---------------------------~~  175 (414)
                      ...|+|||+|++|+.+|.+|++.|.+|.+++++-.+-          +...                           +.
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~  109 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSA  109 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHH
Confidence            4679999999999999999999999999999874331          1000                           01


Q ss_pred             HHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeC-----------CCcEEecCEEEEccCCcCCCh-hh-hhc-
Q 014997          176 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-----------DGSTIDADTIVIGIGAKPTVS-PF-ERV-  241 (414)
Q Consensus       176 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~-----------~g~~i~~D~vi~a~G~~p~~~-~l-~~~-  241 (414)
                      ++...+....-+.|.+++.+..|..+--.++.++..+...           |--.++++.||-+||.....- ++ +.. 
T Consensus       110 e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~kr~~  189 (262)
T COG1635         110 EFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLAKRIP  189 (262)
T ss_pred             HHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHHHHhcc
Confidence            1222333334567899999999988764434356555542           234689999999999976532 22 221 


Q ss_pred             --CCccc-CC--------CEEEcCCCCCCCCcEEEEccccc
Q 014997          242 --GLNSS-VG--------GIQVDGQFRTRMPGIFAIGDVAA  271 (414)
Q Consensus       242 --gl~~~-~g--------~i~vd~~~~t~~~~IyA~GD~a~  271 (414)
                        ++... .+        ...|+.+.+ -+||+|++|=.+.
T Consensus       190 ~l~~~~~Ge~~mw~e~~E~lvV~~T~e-V~pgL~vaGMa~~  229 (262)
T COG1635         190 ELGIEVPGEKSMWAERGEDLVVENTGE-VYPGLYVAGMAVN  229 (262)
T ss_pred             ccccccCCCcchhhhHHHHHHHhcccc-ccCCeEeehhhHH
Confidence              22211 01        122222222 4799999997765

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=98.08  E-value=1.1e-05  Score=86.44  Aligned_cols=93  Identities=22%  Similarity=0.284  Sum_probs=69.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc-------cc-ccCHHHHHHHHHHHHhCCcEEEcCceEEEEEe
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------QR-LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  203 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------~~-~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~  203 (414)
                      .+++|+|||+|+.|+.+|..|+++|.+|+++++.+.+.       +. .++.++.....+.+++.||+|++++.+..   
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~~---  506 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVGK---  506 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECC---
Confidence            46799999999999999999999999999999865431       10 12445555556678889999999875410   


Q ss_pred             cCCCcEEEEEeCCCcEEecCEEEEccCC-cCC
Q 014997          204 GSDGRVAAVKLEDGSTIDADTIVIGIGA-KPT  234 (414)
Q Consensus       204 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~-~p~  234 (414)
                             .+.+++.....+|.||+|+|. .|.
T Consensus       507 -------~v~~~~l~~~~ydavvlAtGa~~~~  531 (752)
T PRK12778        507 -------TITIEELEEEGFKGIFIASGAGLPN  531 (752)
T ss_pred             -------cCCHHHHhhcCCCEEEEeCCCCCCC
Confidence                   233444445679999999998 464

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=98.08  E-value=1.1e-05  Score=81.86  Aligned_cols=90  Identities=24%  Similarity=0.295  Sum_probs=67.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc-------cc-ccCHHHHHHHHHHHHhCCcEEEcCceEEEEEe
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------QR-LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  203 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------~~-~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~  203 (414)
                      .+++|+|||+|+.|+++|..|++.|.+|+++++.+++.       +. .+++++.....+.+++.||++++++.+..-  
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~--  219 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGVD--  219 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCCc--
Confidence            35799999999999999999999999999999887642       11 134556656667788899999999876311  


Q ss_pred             cCCCcEEEEEeCCCcEEecCEEEEccCCc
Q 014997          204 GSDGRVAAVKLEDGSTIDADTIVIGIGAK  232 (414)
Q Consensus       204 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~  232 (414)
                              +. .++....+|.|++|+|..
T Consensus       220 --------~~-~~~~~~~~d~VilAtGa~  239 (485)
T TIGR01317       220 --------IS-ADELKEQFDAVVLAGGAT  239 (485)
T ss_pred             --------cC-HHHHHhhCCEEEEccCCC
Confidence                    00 011235799999999997

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK06184 hypothetical protein; Provisional

Probab=98.07  E-value=5.1e-05  Score=77.64  Aligned_cols=98  Identities=16%  Similarity=0.240  Sum_probs=73.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc----------------------------------------c--
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------------------------R--  171 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~----------------------------------------~--  171 (414)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+.+..                                        .  
T Consensus         4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~   83 (502)
T PRK06184          4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGSV   83 (502)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCceE
Confidence            4799999999999999999999999999998622100                                        0  


Q ss_pred             ---------------------ccC-HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEe---CCCcEEecCEEE
Q 014997          172 ---------------------LFT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGSTIDADTIV  226 (414)
Q Consensus       172 ---------------------~~~-~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~---~~g~~i~~D~vi  226 (414)
                                           .++ ..+.+.+.+.+++.|++++.++++++++.++++.  .+.+   ++++++.+|.||
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v--~v~~~~~~~~~~i~a~~vV  161 (502)
T PRK06184         84 AESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGV--TARVAGPAGEETVRARYLV  161 (502)
T ss_pred             EEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcE--EEEEEeCCCeEEEEeCEEE
Confidence                                 000 1123455666777899999999999998665543  3344   556789999999


Q ss_pred             EccCCcC
Q 014997          227 IGIGAKP  233 (414)
Q Consensus       227 ~a~G~~p  233 (414)
                      .|.|...
T Consensus       162 gADG~~S  168 (502)
T PRK06184        162 GADGGRS  168 (502)
T ss_pred             ECCCCch
Confidence            9999865

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=98.07  E-value=1.5e-05  Score=86.21  Aligned_cols=90  Identities=20%  Similarity=0.209  Sum_probs=65.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc--------ccCHHHHHHHHHHHHhCCcEEEcCceEEEEEec
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG  204 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~--------~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~  204 (414)
                      +++|+|||||+.|+.+|..|+++|.+|+|+++.+.+...        .++.+......+.+.+.||+++++...      
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~------  610 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSP------  610 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEeccc------
Confidence            578999999999999999999999999999987654211        123344444456678889999987421      


Q ss_pred             CCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997          205 SDGRVAAVKLEDGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       205 ~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (414)
                            .+.+.+.+...+|.||+|+|..+.
T Consensus       611 ------d~~ve~l~~~gYDaVIIATGA~~~  634 (1012)
T TIGR03315       611 ------DLTVAELKNQGYKYVILAIGAWKH  634 (1012)
T ss_pred             ------ceEhhhhhcccccEEEECCCCCCC
Confidence                  112223334668999999998754

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.06  E-value=5.6e-05  Score=76.56  Aligned_cols=99  Identities=27%  Similarity=0.427  Sum_probs=66.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc-----ccc---------------------------------CH
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-----RLF---------------------------------TP  175 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-----~~~---------------------------------~~  175 (414)
                      ++++|||+|+.|+++|..++++|.+|+++++.. +-.     .+.                                 +.
T Consensus         2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~   80 (466)
T PRK07845          2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVDL   80 (466)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccCH
Confidence            579999999999999999999999999999763 100     000                                 00


Q ss_pred             -H-----------HHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCc--EEecCEEEEccCCcCC
Q 014997          176 -S-----------LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPT  234 (414)
Q Consensus       176 -~-----------~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~  234 (414)
                       .           ....+.+.+++.||+++.+. +..++.+.+.....|.+.+|+  ++.+|.||+|||.+|.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~-~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~  152 (466)
T PRK07845         81 PAVNARVKALAAAQSADIRARLEREGVRVIAGR-GRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPR  152 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE-EEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCC
Confidence             0           01234455677899998875 333221112222355666775  7999999999999986

>PRK09126 hypothetical protein; Provisional

Probab=98.06  E-value=4.8e-05  Score=75.17  Aligned_cols=100  Identities=24%  Similarity=0.373  Sum_probs=72.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc-------c------------------------c-----------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------Q------------------------R-----------  171 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------~------------------------~-----------  171 (414)
                      -+|+|||||+.|+-+|..|++.|.+|+++++.+.+-       .                        .           
T Consensus         4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~   83 (392)
T PRK09126          4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKVL   83 (392)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEEE
Confidence            469999999999999999999999999999864310       0                        0           


Q ss_pred             --------ccCH---------------HHHHHHHHHH-HhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEE
Q 014997          172 --------LFTP---------------SLAQRYEQLY-QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI  227 (414)
Q Consensus       172 --------~~~~---------------~~~~~~~~~l-~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~  227 (414)
                              .++.               .+.+.+.+.+ +..|++++.++++++++.++++  ..|.+++|+++.+|.||.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~--~~v~~~~g~~~~a~~vI~  161 (392)
T PRK09126         84 NGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDG--AQVTLANGRRLTARLLVA  161 (392)
T ss_pred             cCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCe--EEEEEcCCCEEEeCEEEE
Confidence                    0000               0111222222 3468999999999999765333  357788899999999999


Q ss_pred             ccCCcCCC
Q 014997          228 GIGAKPTV  235 (414)
Q Consensus       228 a~G~~p~~  235 (414)
                      |.|.....
T Consensus       162 AdG~~S~v  169 (392)
T PRK09126        162 ADSRFSAT  169 (392)
T ss_pred             eCCCCchh
Confidence            99987653

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=98.06  E-value=5.9e-05  Score=74.53  Aligned_cols=99  Identities=31%  Similarity=0.395  Sum_probs=75.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC-Cccccc----------------------------------------
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHLLQR----------------------------------------  171 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~-~~~l~~----------------------------------------  171 (414)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+++. ..+.+.                                        
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~   81 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG   81 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence            357999999999999999999999999999986 111000                                        


Q ss_pred             -------------------ccCHHHHHHHHHHHHhCC-cEEEcCceEEEEEecCCCcEEEEEeC-CCcEEecCEEEEccC
Q 014997          172 -------------------LFTPSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVKLE-DGSTIDADTIVIGIG  230 (414)
Q Consensus       172 -------------------~~~~~~~~~~~~~l~~~g-v~i~~~~~v~~i~~~~~~~~~~v~~~-~g~~i~~D~vi~a~G  230 (414)
                                         .--..+.+.+.+.+.+.+ |+++.+++|+.++.+++ .+. ++++ +|+++.||++|-|-|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~-~v~-v~l~~dG~~~~a~llVgADG  159 (387)
T COG0654          82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGD-GVT-VTLSFDGETLDADLLVGADG  159 (387)
T ss_pred             ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCC-ceE-EEEcCCCcEEecCEEEECCC
Confidence                               000124455666666665 99999999999987643 333 7777 999999999999999


Q ss_pred             CcC
Q 014997          231 AKP  233 (414)
Q Consensus       231 ~~p  233 (414)
                      ...
T Consensus       160 ~~S  162 (387)
T COG0654         160 ANS  162 (387)
T ss_pred             Cch
Confidence            754

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.05  E-value=3.6e-05  Score=74.43  Aligned_cols=100  Identities=29%  Similarity=0.378  Sum_probs=70.9

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc-----------------------------------------c---
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-----------------------------------------Q---  170 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-----------------------------------------~---  170 (414)
                      +|+|||||+.|+-+|..|++.|.+|+++++.+.+.                                         .   
T Consensus         3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~~   82 (356)
T PF01494_consen    3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGISD   82 (356)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETTT
T ss_pred             eEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccCC
Confidence            68999999999999999999999999999872210                                         0   


Q ss_pred             -----------cc------------c-CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeC-CC--cEEecC
Q 014997          171 -----------RL------------F-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DG--STIDAD  223 (414)
Q Consensus       171 -----------~~------------~-~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~-~g--~~i~~D  223 (414)
                                 ..            + -..+.+.+.+.+++.|++++.++++..+..+.++....+... +|  +++.||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~ad  162 (356)
T PF01494_consen   83 SRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEAD  162 (356)
T ss_dssp             SEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEES
T ss_pred             ccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEe
Confidence                       00            0 023556677777888999999999999886655433233333 34  369999


Q ss_pred             EEEEccCCcCC
Q 014997          224 TIVIGIGAKPT  234 (414)
Q Consensus       224 ~vi~a~G~~p~  234 (414)
                      +||-|-|....
T Consensus       163 lvVgADG~~S~  173 (356)
T PF01494_consen  163 LVVGADGAHSK  173 (356)
T ss_dssp             EEEE-SGTT-H
T ss_pred             eeecccCcccc
Confidence            99999998764

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=98.04  E-value=6.2e-05  Score=74.07  Aligned_cols=98  Identities=28%  Similarity=0.361  Sum_probs=72.4

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc-------c--ccC-------------------------------
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------R--LFT-------------------------------  174 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-------~--~~~-------------------------------  174 (414)
                      .|+|||+|+.|+-+|..|++.|.+|+++++.+.+-.       +  .+.                               
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~   80 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD   80 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence            489999999999999999999999999998753100       0  000                               


Q ss_pred             -------------------------HHHHHHHHHHHHhCC-cEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEc
Q 014997          175 -------------------------PSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG  228 (414)
Q Consensus       175 -------------------------~~~~~~~~~~l~~~g-v~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a  228 (414)
                                               ..+.+.+.+.+.+.| ++++.+++|++++..++ .+ .+.+++|+++.+|.||.|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~-~~-~v~~~~g~~~~~~~vi~a  158 (385)
T TIGR01988        81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSD-HV-ELTLDDGQQLRARLLVGA  158 (385)
T ss_pred             CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCC-ee-EEEECCCCEEEeeEEEEe
Confidence                                     012233444456666 99999999999976533 33 577889989999999999


Q ss_pred             cCCcCC
Q 014997          229 IGAKPT  234 (414)
Q Consensus       229 ~G~~p~  234 (414)
                      .|....
T Consensus       159 dG~~S~  164 (385)
T TIGR01988       159 DGANSK  164 (385)
T ss_pred             CCCCCH
Confidence            998653

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK09897 hypothetical protein; Provisional

Probab=98.04  E-value=0.00067  Score=69.36  Aligned_cols=87  Identities=18%  Similarity=0.152  Sum_probs=57.4

Q ss_pred             CeEEcCCcEEEEeCCCC--EEEeCC-CcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCCeEE
Q 014997           61 IEMIYQDPVTSIDIEKQ--TLITNS-GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVV  137 (414)
Q Consensus        61 i~~~~~~~V~~id~~~~--~V~~~~-g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vv  137 (414)
                      +.++.+++|++++....  .|++.+ |..+.+|+||+|||..+...+  .+  .++  ++.+..+.. ..... .+.+|+
T Consensus       124 V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh~~p~~~--~~--~~~--yi~~pw~~~-~~~~i-~~~~V~  195 (534)
T PRK09897        124 VAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVWPDEE--EA--TRT--YFPSPWSGL-MEAKV-DACNVG  195 (534)
T ss_pred             EEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCCCCCCCC--hh--hcc--ccCCCCcch-hhcCC-CCCeEE
Confidence            67888889999987654  455544 467999999999997532111  11  111  222222221 11222 368999


Q ss_pred             EECCChHHHHHHHHHHhC
Q 014997          138 VVGGGYIGMEVAAAAVGW  155 (414)
Q Consensus       138 VvGgG~~g~e~A~~l~~~  155 (414)
                      |+|.|.++++++..|..+
T Consensus       196 I~GtGLt~iD~v~~Lt~~  213 (534)
T PRK09897        196 IMGTSLSGLDAAMAVAIQ  213 (534)
T ss_pred             EECCCHHHHHHHHHHHhc
Confidence            999999999999998765

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.02  E-value=6.7e-05  Score=74.01  Aligned_cols=98  Identities=26%  Similarity=0.337  Sum_probs=73.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc--------------------ccc--------------------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------------------RLF--------------------  173 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~--------------------~~~--------------------  173 (414)
                      -+|+|||||+.|+-+|..|++.|.+|+++++.+.+..                    +.+                    
T Consensus         6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~   85 (388)
T PRK07608          6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRVF   85 (388)
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEEE
Confidence            4799999999999999999999999999997744211                    000                    


Q ss_pred             ------------------------CHHHHHHHHHHHHhCC-cEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEc
Q 014997          174 ------------------------TPSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG  228 (414)
Q Consensus       174 ------------------------~~~~~~~~~~~l~~~g-v~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a  228 (414)
                                              ...+.+.+.+.+++.| ++++ +.+++++...+++  ..+.+.+|+++.+|.+|.|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI~a  162 (388)
T PRK07608         86 GDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDA--ATLTLADGQVLRADLVVGA  162 (388)
T ss_pred             ECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCe--EEEEECCCCEEEeeEEEEe
Confidence                                    0122334555566776 9999 8889998755343  3577888888999999999


Q ss_pred             cCCcCC
Q 014997          229 IGAKPT  234 (414)
Q Consensus       229 ~G~~p~  234 (414)
                      .|....
T Consensus       163 dG~~S~  168 (388)
T PRK07608        163 DGAHSW  168 (388)
T ss_pred             CCCCch
Confidence            998653

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.02  E-value=6.4e-05  Score=74.88  Aligned_cols=100  Identities=24%  Similarity=0.349  Sum_probs=69.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc----cc-------------------------------------
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL----QR-------------------------------------  171 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l----~~-------------------------------------  171 (414)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+++.+.+-    .+                                     
T Consensus        18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~   97 (415)
T PRK07364         18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDAD   97 (415)
T ss_pred             ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeCC
Confidence            3579999999999999999999999999999763210    00                                     


Q ss_pred             -----ccC---------------HHHHHHHHHHHHhC-CcEEEcCceEEEEEecCCCcEEEEEeCC--C-cEEecCEEEE
Q 014997          172 -----LFT---------------PSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLED--G-STIDADTIVI  227 (414)
Q Consensus       172 -----~~~---------------~~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~~~v~~~~--g-~~i~~D~vi~  227 (414)
                           .++               ..+.+.+.+.+.+. |++++.++++++++.++++.  .+.+.+  + .++.||+||.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~--~v~~~~~~~~~~i~adlvIg  175 (415)
T PRK07364         98 YPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAA--TVTLEIEGKQQTLQSKLVVA  175 (415)
T ss_pred             CCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCee--EEEEccCCcceEEeeeEEEE
Confidence                 000               11222333334443 79999999999997654432  455543  2 3699999999


Q ss_pred             ccCCcCC
Q 014997          228 GIGAKPT  234 (414)
Q Consensus       228 a~G~~p~  234 (414)
                      |.|....
T Consensus       176 ADG~~S~  182 (415)
T PRK07364        176 ADGARSP  182 (415)
T ss_pred             eCCCCch
Confidence            9998764

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=98.01  E-value=8.9e-05  Score=76.72  Aligned_cols=102  Identities=22%  Similarity=0.292  Sum_probs=72.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc----------------------------------c------
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------------L------  172 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------------~------  172 (414)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++++.+.+...                                  .      
T Consensus        23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~  102 (547)
T PRK08132         23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDEE  102 (547)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCCe
Confidence            357999999999999999999999999999977422000                                  0      


Q ss_pred             -------------------c-CHHHHHHHHHHHHhC-CcEEEcCceEEEEEecCCCcEEEEEeCCCc-EEecCEEEEccC
Q 014997          173 -------------------F-TPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIG  230 (414)
Q Consensus       173 -------------------~-~~~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~-~i~~D~vi~a~G  230 (414)
                                         + ...+.+.+.+.+++. ++++++++++++++.++++....+...+|+ ++.+|.||.|.|
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG  182 (547)
T PRK08132        103 VYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDG  182 (547)
T ss_pred             EEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCC
Confidence                               0 001223344445554 799999999999987655433334444554 699999999999


Q ss_pred             CcCC
Q 014997          231 AKPT  234 (414)
Q Consensus       231 ~~p~  234 (414)
                      ....
T Consensus       183 ~~S~  186 (547)
T PRK08132        183 ARSP  186 (547)
T ss_pred             CCcH
Confidence            8765

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=98.01  E-value=8.1e-05  Score=73.77  Aligned_cols=108  Identities=18%  Similarity=0.263  Sum_probs=80.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc------------------ccc-----------------------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL------------------QRL-----------------------  172 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l------------------~~~-----------------------  172 (414)
                      -.|+|||+|+.|+-+|..|++.|.+|.++++.+.+-                  +..                       
T Consensus         4 ~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~~   83 (396)
T COG0644           4 YDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAIE   83 (396)
T ss_pred             eeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEEe
Confidence            369999999999999999999999999999873320                  000                       


Q ss_pred             --------c-CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhcCC
Q 014997          173 --------F-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL  243 (414)
Q Consensus       173 --------~-~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl  243 (414)
                              + -..+.+++.+..++.|.+++.++.+..+..++++.+..+ ..++.++.++.||.|.|....  +.+.+++
T Consensus        84 ~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~a~~vI~AdG~~s~--l~~~lg~  160 (396)
T COG0644          84 VPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGV-RAGDDEVRAKVVIDADGVNSA--LARKLGL  160 (396)
T ss_pred             cCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEE-EcCCEEEEcCEEEECCCcchH--HHHHhCC
Confidence                    0 112445677778889999999999999987766655443 344478999999999997653  4444444


Q ss_pred             c
Q 014997          244 N  244 (414)
Q Consensus       244 ~  244 (414)
                      .
T Consensus       161 ~  161 (396)
T COG0644         161 K  161 (396)
T ss_pred             C
Confidence            4

>PRK08013 oxidoreductase; Provisional

Probab=98.01  E-value=7.1e-05  Score=74.30  Aligned_cols=99  Identities=25%  Similarity=0.328  Sum_probs=72.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc----------------------------c--------------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------------R--------------  171 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~----------------------------~--------------  171 (414)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+.+-.                            .              
T Consensus         4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~~   83 (400)
T PRK08013          4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGMEV   83 (400)
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEEE
Confidence            4799999999999999999999999999997643100                            0              


Q ss_pred             ---------ccC---------------HHHHHHHHHHHHhC-CcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEE
Q 014997          172 ---------LFT---------------PSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV  226 (414)
Q Consensus       172 ---------~~~---------------~~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi  226 (414)
                               .++               ..+.+.+.+.+++. ||+++.++++++++.++++  ..+.+.+|+++.+|+||
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~--v~v~~~~g~~i~a~lvV  161 (400)
T PRK08013         84 WDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENE--AFLTLKDGSMLTARLVV  161 (400)
T ss_pred             EeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe--EEEEEcCCCEEEeeEEE
Confidence                     000               01122233334443 7999999999999765443  35678899999999999


Q ss_pred             EccCCcCC
Q 014997          227 IGIGAKPT  234 (414)
Q Consensus       227 ~a~G~~p~  234 (414)
                      -|-|....
T Consensus       162 gADG~~S~  169 (400)
T PRK08013        162 GADGANSW  169 (400)
T ss_pred             EeCCCCcH
Confidence            99998654

>PRK06753 hypothetical protein; Provisional

Probab=98.00  E-value=5.2e-05  Score=74.40  Aligned_cols=98  Identities=13%  Similarity=0.214  Sum_probs=69.4

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc----ccCHH----------------------------------
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----LFTPS----------------------------------  176 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~----~~~~~----------------------------------  176 (414)
                      +|+|||||+.|+-+|..|++.|.+|+++++.+.+-..    .+.+.                                  
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~~   81 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTLL   81 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCEE
Confidence            6999999999999999999999999999987532100    00000                                  


Q ss_pred             --------------HHHHHHHHHHh--CCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997          177 --------------LAQRYEQLYQQ--NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       177 --------------~~~~~~~~l~~--~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (414)
                                    -...+.+.|.+  .+.++++++++++++.++ +. ..+.+++|+++.+|+||-|-|....
T Consensus        82 ~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~-~~-v~v~~~~g~~~~~~~vigadG~~S~  153 (373)
T PRK06753         82 NKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENET-DK-VTIHFADGESEAFDLCIGADGIHSK  153 (373)
T ss_pred             eecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecC-Cc-EEEEECCCCEEecCEEEECCCcchH
Confidence                          00112233322  246788999999998543 33 3577889999999999999997654

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.00  E-value=6.5e-05  Score=75.57  Aligned_cols=98  Identities=16%  Similarity=0.252  Sum_probs=64.7

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc-cc-----ccCH-----------HHH----------HHH----H
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-QR-----LFTP-----------SLA----------QRY----E  182 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-~~-----~~~~-----------~~~----------~~~----~  182 (414)
                      -.|+|||||+.|+.+|..|+++|.+|+++++.+..+ ..     +.+.           ++.          ..+    .
T Consensus         4 yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (441)
T PRK08010          4 YQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRNKNF   83 (441)
T ss_pred             CCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHH
Confidence            479999999999999999999999999999875321 10     1111           110          111    1


Q ss_pred             HHHHh-CCcEEEcCceEEEEEecCCCcEEEEEeCCCc-EEecCEEEEccCCcCCCh
Q 014997          183 QLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       183 ~~l~~-~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~-~i~~D~vi~a~G~~p~~~  236 (414)
                      +.+.+ .|++++.+. +..+.   .+. ..|.+.+|. ++.+|.+|+|+|.+|...
T Consensus        84 ~~~~~~~gv~~~~g~-~~~i~---~~~-~~v~~~~g~~~~~~d~lviATGs~p~~p  134 (441)
T PRK08010         84 HNLADMPNIDVIDGQ-AEFIN---NHS-LRVHRPEGNLEIHGEKIFINTGAQTVVP  134 (441)
T ss_pred             HHHhhcCCcEEEEEE-EEEec---CCE-EEEEeCCCeEEEEeCEEEEcCCCcCCCC
Confidence            12333 389988763 44443   222 355666775 699999999999998643

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=97.99  E-value=1.9e-05  Score=86.60  Aligned_cols=93  Identities=25%  Similarity=0.316  Sum_probs=68.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc-------c-ccCHHHHHHHHHHHHhCCcEEEcCceEEEEEe
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------R-LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  203 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-------~-~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~  203 (414)
                      .+++|+|||+|+.|+.+|..|+++|.+|+|+++.+.+..       . .++.++.....+.+++.||++++++.+..   
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg~---  505 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIGK---  505 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccCC---
Confidence            357999999999999999999999999999998765421       1 13456667777788999999999865410   


Q ss_pred             cCCCcEEEEEeCCC-cEEecCEEEEccCCc-CC
Q 014997          204 GSDGRVAAVKLEDG-STIDADTIVIGIGAK-PT  234 (414)
Q Consensus       204 ~~~~~~~~v~~~~g-~~i~~D~vi~a~G~~-p~  234 (414)
                             .+.+.+- ....+|.||+|+|.. |.
T Consensus       506 -------~~~~~~l~~~~~yDaViIATGa~~pr  531 (1006)
T PRK12775        506 -------TFTVPQLMNDKGFDAVFLGVGAGAPT  531 (1006)
T ss_pred             -------ccCHHHHhhccCCCEEEEecCCCCCC
Confidence                   1111111 124589999999984 54

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=97.99  E-value=0.00011  Score=75.19  Aligned_cols=138  Identities=21%  Similarity=0.286  Sum_probs=84.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccc------------------------------------c---
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------------------------------------F---  173 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~------------------------------------~---  173 (414)
                      .|+|+|||+|.+|+-.|..|.+.|.+++++++.+.+..-+                                    .   
T Consensus         1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f   80 (531)
T PF00743_consen    1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDF   80 (531)
T ss_dssp             --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCC
Confidence            3799999999999999999999999999999885431100                                    0   


Q ss_pred             --CHHHHHHHHHHHHhCCc--EEEcCceEEEEEecCCC---cEEEEEeC-CCc--EEecCEEEEccCCc--CCChhhhhc
Q 014997          174 --TPSLAQRYEQLYQQNGV--KFVKGASIKNLEAGSDG---RVAAVKLE-DGS--TIDADTIVIGIGAK--PTVSPFERV  241 (414)
Q Consensus       174 --~~~~~~~~~~~l~~~gv--~i~~~~~v~~i~~~~~~---~~~~v~~~-~g~--~i~~D~vi~a~G~~--p~~~~l~~~  241 (414)
                        ..++.++++...+..++  .+.++++|.+++..++.   ..-.|.+. +|+  +-.+|.||+|+|.-  |+.+.-.-.
T Consensus        81 ~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~~  160 (531)
T PF00743_consen   81 PSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSFP  160 (531)
T ss_dssp             EBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----C
T ss_pred             CCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhhh
Confidence              13577788888887777  58899999999875442   12245554 342  45689999999974  543320112


Q ss_pred             CCcccCCCEEEcCCCCC----CCCcEEEEcccc
Q 014997          242 GLNSSVGGIQVDGQFRT----RMPGIFAIGDVA  270 (414)
Q Consensus       242 gl~~~~g~i~vd~~~~t----~~~~IyA~GD~a  270 (414)
                      |++.=.|.+.=...++.    ...+|-.+|-..
T Consensus       161 G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~  193 (531)
T PF00743_consen  161 GLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGN  193 (531)
T ss_dssp             TGGGHCSEEEEGGG--TGGGGTTSEEEEESSSH
T ss_pred             hhhcCCeeEEccccCcChhhcCCCEEEEEeCCH
Confidence            33322344544444443    346788888543

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=97.99  E-value=7.1e-05  Score=75.72  Aligned_cols=97  Identities=24%  Similarity=0.335  Sum_probs=66.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccc-----cCHH--------------------------------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-----FTPS--------------------------------  176 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~-----~~~~--------------------------------  176 (414)
                      ..|+|||+|+.|+.+|..|+++|.+|+++++.+.+...+     .+..                                
T Consensus         6 yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   85 (461)
T PRK05249          6 YDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITFADL   85 (461)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCHHHH
Confidence            479999999999999999999999999999864431110     1100                                


Q ss_pred             ----------HHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCc--EEecCEEEEccCCcCCC
Q 014997          177 ----------LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTV  235 (414)
Q Consensus       177 ----------~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~~  235 (414)
                                ..+.+.+.+++.||+++.+. +..+.   .+. ..+...+|+  ++.+|.+|+|+|.+|..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~---~~~-~~v~~~~g~~~~~~~d~lviATGs~p~~  151 (461)
T PRK05249         86 LARADHVINKQVEVRRGQYERNRVDLIQGR-ARFVD---PHT-VEVECPDGEVETLTADKIVIATGSRPYR  151 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCEEEEEE-EEEec---CCE-EEEEeCCCceEEEEcCEEEEcCCCCCCC
Confidence                      01123344667899998874 33332   222 245556664  79999999999999864

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.98  E-value=4.9e-05  Score=76.36  Aligned_cols=98  Identities=19%  Similarity=0.252  Sum_probs=63.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc------ccC--------------HHH-----------HHHHH
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------LFT--------------PSL-----------AQRYE  182 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------~~~--------------~~~-----------~~~~~  182 (414)
                      -+|+|||+|+.|+.+|..|+++|.+|+++++.+.++..      +.+              +++           .....
T Consensus         4 ~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (438)
T PRK07251          4 YDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRGKNY   83 (438)
T ss_pred             cCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            46999999999999999999999999999987532110      011              011           11122


Q ss_pred             HHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCC-CcEEecCEEEEccCCcCCCh
Q 014997          183 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED-GSTIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       183 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~-g~~i~~D~vi~a~G~~p~~~  236 (414)
                      +.+++.||+++.+..  .+.  ++.. ..+...+ ..++.+|.||+|||.+|...
T Consensus        84 ~~~~~~gV~~~~g~~--~~~--~~~~-v~v~~~~~~~~~~~d~vViATGs~~~~p  133 (438)
T PRK07251         84 AMLAGSGVDLYDAEA--HFV--SNKV-IEVQAGDEKIELTAETIVINTGAVSNVL  133 (438)
T ss_pred             HHHHhCCCEEEEEEE--EEc--cCCE-EEEeeCCCcEEEEcCEEEEeCCCCCCCC
Confidence            446778899887653  222  1222 1233222 24799999999999998643

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=97.98  E-value=9e-05  Score=73.23  Aligned_cols=100  Identities=23%  Similarity=0.346  Sum_probs=73.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc--------------------------------cc-------c--
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL--------------------------------LQ-------R--  171 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~--------------------------------l~-------~--  171 (414)
                      .-+|+|||||+.|+-+|..|++.|.+|+++++.+..                                ..       +  
T Consensus         5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~   84 (391)
T PRK08020          5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLE   84 (391)
T ss_pred             cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEE
Confidence            357999999999999999999999999999976410                                00       0  


Q ss_pred             ---c------c---------------CHHHHHHHHHHHHhC-CcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEE
Q 014997          172 ---L------F---------------TPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV  226 (414)
Q Consensus       172 ---~------~---------------~~~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi  226 (414)
                         .      +               ...+.+.+.+.+++. |++++.+++++++...+++  ..+.+++|+++.+|.||
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI  162 (391)
T PRK08020         85 TWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDG--WELTLADGEEIQAKLVI  162 (391)
T ss_pred             EEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe--EEEEECCCCEEEeCEEE
Confidence               0      0               001223344444555 9999999999999755443  35677888899999999


Q ss_pred             EccCCcCC
Q 014997          227 IGIGAKPT  234 (414)
Q Consensus       227 ~a~G~~p~  234 (414)
                      .|.|....
T Consensus       163 ~AdG~~S~  170 (391)
T PRK08020        163 GADGANSQ  170 (391)
T ss_pred             EeCCCCch
Confidence            99998764

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.98  E-value=4.3e-06  Score=74.33  Aligned_cols=129  Identities=26%  Similarity=0.423  Sum_probs=83.6

Q ss_pred             CCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCCCEE--
Q 014997            2 ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTL--   79 (414)
Q Consensus         2 ~~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~V--   79 (414)
                      +..+|++|++++..+|.++.++...+...........      ... ..+..+.+...+++++++++|.+|+...+.+  
T Consensus        21 ~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~   93 (201)
T PF07992_consen   21 PGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFL------PAR-LFKLVDQLKNRGVEIRLNAKVVSIDPESKRVVC   93 (201)
T ss_dssp             TTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHH------HHH-HGHHHHHHHHHTHEEEHHHTEEEEEESTTEEEE
T ss_pred             CCCeEEEEecccccccccccccccccccccccccccc------ccc-ccccccccccceEEEeecccccccccccccccc
Confidence            4578999988888888777776644321000000000      000 0012233467899998889999999988842  


Q ss_pred             --------EeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCCeEEEEC
Q 014997           80 --------ITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVG  140 (414)
Q Consensus        80 --------~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG  140 (414)
                              ...++.++.||+||||||+.+.. |.++|.  +.....++..++..+.......++++|||
T Consensus        94 ~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~-~~i~g~--~~~~~~~~~~~~~~~~~~~~~~~~v~VvG  159 (201)
T PF07992_consen   94 PAVTIQVVETGDGREIKYDYLVIATGSRPRT-PNIPGE--EVAYFLRGVDDAQRFLELLESPKRVAVVG  159 (201)
T ss_dssp             TCEEEEEEETTTEEEEEEEEEEEESTEEEEE-ESSTTT--TTECBTTSEEHHHHHHTHSSTTSEEEEES
T ss_pred             CcccceeeccCCceEecCCeeeecCccccce-eecCCC--ccccccccccccccccccccccccccccc
Confidence                    23456689999999999998764 444553  22233456677888887777777999999

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=97.98  E-value=7e-05  Score=76.01  Aligned_cols=100  Identities=22%  Similarity=0.316  Sum_probs=67.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccc--------------------------c-------CHH---
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL--------------------------F-------TPS---  176 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~--------------------------~-------~~~---  176 (414)
                      ..+++|||+|+.|+.+|..|+++|.+|.++++. .+-..+                          +       ..+   
T Consensus         4 ~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   82 (472)
T PRK05976          4 EYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDFAK   82 (472)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCHHH
Confidence            457999999999999999999999999999975 210000                          0       001   


Q ss_pred             -----------HHHHHHHHHHhCCcEEEcCceEEEEEec---CCCcEEEEEeCCC--cEEecCEEEEccCCcCC
Q 014997          177 -----------LAQRYEQLYQQNGVKFVKGASIKNLEAG---SDGRVAAVKLEDG--STIDADTIVIGIGAKPT  234 (414)
Q Consensus       177 -----------~~~~~~~~l~~~gv~i~~~~~v~~i~~~---~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~  234 (414)
                                 +.....+.+++.||+++.+. ++.+...   ++.....|.+.+|  +++.+|.+|+|+|.+|.
T Consensus        83 ~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~-a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~  155 (472)
T PRK05976         83 VQERKDGIVDRLTKGVAALLKKGKIDVFHGI-GRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPV  155 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCC
Confidence                       11122344567799999874 4444321   0111335666776  47999999999999986

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.97  E-value=9.4e-05  Score=72.99  Aligned_cols=100  Identities=23%  Similarity=0.322  Sum_probs=71.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc--cc---c---c--ccCH----------------------------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH--LL---Q---R--LFTP----------------------------  175 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~--~l---~---~--~~~~----------------------------  175 (414)
                      .+|+|||||+.|+-+|..|++.|.+|+++++.+.  +.   .   +  .+.+                            
T Consensus         4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~~   83 (384)
T PRK08849          4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLET   83 (384)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEEE
Confidence            4799999999999999999999999999996531  00   0   0  0000                            


Q ss_pred             ---------------------------HHHHHHHHHHHh-CCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEE
Q 014997          176 ---------------------------SLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI  227 (414)
Q Consensus       176 ---------------------------~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~  227 (414)
                                                 .+...+.+.+++ .|++++.++++++++.++++  ..+.+.+|+++.+|+||.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~--~~v~~~~g~~~~~~lvIg  161 (384)
T PRK08849         84 WEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG--NRVTLESGAEIEAKWVIG  161 (384)
T ss_pred             EeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCe--EEEEECCCCEEEeeEEEE
Confidence                                       000111122223 47999999999999865444  357888999999999999


Q ss_pred             ccCCcCCC
Q 014997          228 GIGAKPTV  235 (414)
Q Consensus       228 a~G~~p~~  235 (414)
                      |.|.....
T Consensus       162 ADG~~S~v  169 (384)
T PRK08849        162 ADGANSQV  169 (384)
T ss_pred             ecCCCchh
Confidence            99997754

>PLN02697 lycopene epsilon cyclase

Probab=97.96  E-value=9.8e-05  Score=75.35  Aligned_cols=98  Identities=23%  Similarity=0.382  Sum_probs=70.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccc-----------------------------------------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-----------------------------------------  172 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~-----------------------------------------  172 (414)
                      -.|+|||+|+.|+.+|..|++.|.+|.++++...+....                                         
T Consensus       109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~  188 (529)
T PLN02697        109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGR  188 (529)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcccE
Confidence            479999999999999999999999999998642211000                                         


Q ss_pred             cC-HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcC
Q 014997          173 FT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  233 (414)
Q Consensus       173 ~~-~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p  233 (414)
                      ++ ..+.+.+.+.+.+.|+++ .++.|+++...+++ ...+.+.+|.++.++.||.|.|...
T Consensus       189 V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~-~~vv~~~dG~~i~A~lVI~AdG~~S  248 (529)
T PLN02697        189 VSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDG-LRLVACEDGRVIPCRLATVASGAAS  248 (529)
T ss_pred             EcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCc-EEEEEEcCCcEEECCEEEECCCcCh
Confidence            00 122344555567779998 56789998755343 3334567888999999999999876

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=97.94  E-value=0.0001  Score=73.22  Aligned_cols=100  Identities=25%  Similarity=0.387  Sum_probs=71.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC-Cc-------------c-------c------ccc-------------
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NH-------------L-------L------QRL-------------  172 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~-~~-------------~-------l------~~~-------------  172 (414)
                      ..+|+|||||+.|+-+|..|++.|.+|+++++. +.             +       +      +..             
T Consensus         4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~   83 (405)
T PRK08850          4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV   83 (405)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence            357999999999999999999999999999974 11             0       0      000             


Q ss_pred             ----------cC---------------HHHHHHHHHHHHh-CCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEE
Q 014997          173 ----------FT---------------PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV  226 (414)
Q Consensus       173 ----------~~---------------~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi  226 (414)
                                ++               ..+...+.+.+.+ .|++++.++++++++.++++  ..+.+++|+++.||+||
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~lvI  161 (405)
T PRK08850         84 WEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESE--AWLTLDNGQALTAKLVV  161 (405)
T ss_pred             EeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe--EEEEECCCCEEEeCEEE
Confidence                      00               0011223333334 47999999999999765433  36788899999999999


Q ss_pred             EccCCcCC
Q 014997          227 IGIGAKPT  234 (414)
Q Consensus       227 ~a~G~~p~  234 (414)
                      .|.|....
T Consensus       162 gADG~~S~  169 (405)
T PRK08850        162 GADGANSW  169 (405)
T ss_pred             EeCCCCCh
Confidence            99997553

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.94  E-value=2.9e-05  Score=78.74  Aligned_cols=91  Identities=20%  Similarity=0.314  Sum_probs=67.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc--------ccCHHHHHHHHHHHHhCCcEEEcCceEEEEEe
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  203 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~--------~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~  203 (414)
                      .+++|+|||+|+.|+.+|..|+++|.+|+++++.+.+...        .++.++.....+.+++.||++++++.+.. . 
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~-~-  219 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGK-D-  219 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECC-c-
Confidence            3579999999999999999999999999999988765211        13445555566778889999999886531 0 


Q ss_pred             cCCCcEEEEEeCCCcEEecCEEEEccCCcC
Q 014997          204 GSDGRVAAVKLEDGSTIDADTIVIGIGAKP  233 (414)
Q Consensus       204 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p  233 (414)
                              +.. +.....+|.||+|+|..+
T Consensus       220 --------~~~-~~~~~~~d~vvlAtGa~~  240 (471)
T PRK12810        220 --------ITA-EELLAEYDAVFLGTGAYK  240 (471)
T ss_pred             --------CCH-HHHHhhCCEEEEecCCCC
Confidence                    000 111257999999999973

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.93  E-value=9.4e-05  Score=75.01  Aligned_cols=96  Identities=26%  Similarity=0.362  Sum_probs=64.7

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccc-----cCH-------------------------------HH
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-----FTP-------------------------------SL  177 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~-----~~~-------------------------------~~  177 (414)
                      ..++|||+|+.|+.+|..++++|.+|+++++.+.+...+     .+.                               .+
T Consensus         5 ~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~   84 (471)
T PRK06467          5 TQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDIDKM   84 (471)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHHHH
Confidence            579999999999999999999999999999864331100     110                               11


Q ss_pred             H-----------HHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCC--cEEecCEEEEccCCcCC
Q 014997          178 A-----------QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPT  234 (414)
Q Consensus       178 ~-----------~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~  234 (414)
                      .           ..+...+++.||+++.+.. . +.   +.....|...+|  +++.+|.+|+|||.+|.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a-~-~~---~~~~v~v~~~~g~~~~~~~d~lViATGs~p~  149 (471)
T PRK06467         85 RARKEKVVKQLTGGLAGMAKGRKVTVVNGLG-K-FT---GGNTLEVTGEDGKTTVIEFDNAIIAAGSRPI  149 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE-E-Ec---cCCEEEEecCCCceEEEEcCEEEEeCCCCCC
Confidence            0           1112335667999987642 2 22   122224555566  47999999999999985

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.93  E-value=2.5e-05  Score=82.18  Aligned_cols=92  Identities=17%  Similarity=0.319  Sum_probs=69.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc--------ccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEe
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------QRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  203 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l--------~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~  203 (414)
                      .+++|+|||+|+.|+.+|..|+++|.+|+++++.+.+.        +..+++.+.....+.+++.||++++++.+..   
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~---  385 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGR---  385 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCC---
Confidence            47899999999999999999999999999999887642        1124556666666788999999999986521   


Q ss_pred             cCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997          204 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       204 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (414)
                             .+.+.+ ....+|.|++++|..+.
T Consensus       386 -------~~~~~~-l~~~~DaV~latGa~~~  408 (639)
T PRK12809        386 -------DITFSD-LTSEYDAVFIGVGTYGM  408 (639)
T ss_pred             -------cCCHHH-HHhcCCEEEEeCCCCCC
Confidence                   111222 13468999999998653

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=97.92  E-value=0.00039  Score=68.44  Aligned_cols=140  Identities=19%  Similarity=0.254  Sum_probs=95.2

Q ss_pred             hCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCC--cEEecCEEEEccCC
Q 014997          154 GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGA  231 (414)
Q Consensus       154 ~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~  231 (414)
                      ..|+.|.-+-.   +-|...+..+.+.+.+.+++.|++++.++.|.++... ++.+..+.+.++  ..+.+|.+|+|+|.
T Consensus       245 ~~g~~v~E~pt---lPPSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~-~~~v~~V~t~~g~~~~l~AD~vVLAaGa  320 (419)
T TIGR03378       245 ATGLTLCELPT---MPPSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFE-GNRVTRIHTRNHRDIPLRADHFVLASGS  320 (419)
T ss_pred             HHCCCEEeCCC---CCCCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEee-CCeEEEEEecCCccceEECCEEEEccCC
Confidence            34666665432   2233456788888999999999999999999998754 455666776665  47999999999998


Q ss_pred             cCCChhhhhc--------CCcc--------------------cCCCEEEcCCCCC-----CCCcEEEEccccccCCccCC
Q 014997          232 KPTVSPFERV--------GLNS--------------------SVGGIQVDGQFRT-----RMPGIFAIGDVAAFPLKMYD  278 (414)
Q Consensus       232 ~p~~~~l~~~--------gl~~--------------------~~g~i~vd~~~~t-----~~~~IyA~GD~a~~~~~~~~  278 (414)
                      --...++++.        +++.                    ..-||.+|+++|.     -.+|+||+|-+....++..-
T Consensus       321 w~S~gL~a~l~~i~Epif~L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d~~~~  400 (419)
T TIGR03378       321 FFSNGLVAEFDKIYEPIFGLDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGYDPIFE  400 (419)
T ss_pred             CcCHHHHhhcCceeeeccCCCcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhcCCChHhc
Confidence            7222443322        2221                    1127899999983     38999999999887765321


Q ss_pred             cccccccHHHHHHHHHHHHHHHh
Q 014997          279 RTARVEHVDHARQSAQHCIKALL  301 (414)
Q Consensus       279 ~~~~~~~~~~A~~~a~~aa~~i~  301 (414)
                      .-    -...|...|..||++|+
T Consensus       401 gc----G~GVai~Ta~~aa~~i~  419 (419)
T TIGR03378       401 GC----GSGVAVSTALHAAEQII  419 (419)
T ss_pred             CC----CchhHHHHHHHHHHhhC
Confidence            10    11247777777777663

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=97.92  E-value=0.00014  Score=71.82  Aligned_cols=97  Identities=22%  Similarity=0.309  Sum_probs=70.1

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc----------------------------c--------------
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------L--------------  172 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------~--------------  172 (414)
                      .|+|||+|+.|+.+|..|++.|.+|+++++.+.+...                            .              
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG   80 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence            4899999999999999999999999999976432100                            0              


Q ss_pred             -c-CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcC
Q 014997          173 -F-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  233 (414)
Q Consensus       173 -~-~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p  233 (414)
                       + ...+.+.+.+.+.+.|++++. ..+..+...+ +....+.+++|+++.|+.||.|+|..+
T Consensus        81 ~i~~~~l~~~l~~~~~~~gv~~~~-~~v~~i~~~~-~~~~~v~~~~g~~~~a~~VI~A~G~~s  141 (388)
T TIGR01790        81 SVDSTRLHEELLQKCPEGGVLWLE-RKAIHAEADG-VALSTVYCAGGQRIQARLVIDARGFGP  141 (388)
T ss_pred             EEcHHHHHHHHHHHHHhcCcEEEc-cEEEEEEecC-CceeEEEeCCCCEEEeCEEEECCCCch
Confidence             0 012334455556677898874 5677776542 333457778888899999999999876

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=97.91  E-value=0.0001  Score=75.63  Aligned_cols=96  Identities=24%  Similarity=0.360  Sum_probs=69.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC-cccc-------------------c----------------------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN-HLLQ-------------------R----------------------  171 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~-~~l~-------------------~----------------------  171 (414)
                      -.|+|||||+.|+++|..+++.|.+|.++++.. .+..                   .                      
T Consensus         5 yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~ln~   84 (618)
T PRK05192          5 YDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRMLNT   84 (618)
T ss_pred             ceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeeccc
Confidence            469999999999999999999999999998862 1100                   0                      


Q ss_pred             -----------ccCH-HHHHHHHHHHHhC-CcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCC
Q 014997          172 -----------LFTP-SLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  231 (414)
Q Consensus       172 -----------~~~~-~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~  231 (414)
                                 .++. .+...+.+.+++. |++++. ..+.++..+ ++.+..|.+.+|..+.|+.||+|+|.
T Consensus        85 skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q-~~V~~Li~e-~grV~GV~t~dG~~I~Ak~VIlATGT  155 (618)
T PRK05192         85 SKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQ-GEVEDLIVE-NGRVVGVVTQDGLEFRAKAVVLTTGT  155 (618)
T ss_pred             CCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEE-eEEEEEEec-CCEEEEEEECCCCEEECCEEEEeeCc
Confidence                       0000 0123344444544 788864 567777543 56777889999999999999999994

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=97.91  E-value=0.00014  Score=71.89  Aligned_cols=58  Identities=24%  Similarity=0.353  Sum_probs=41.9

Q ss_pred             HHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhcCC
Q 014997          182 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL  243 (414)
Q Consensus       182 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl  243 (414)
                      .+.+++.|++++.++.|.++...++ .+ .|.+.+| ++.||.||+|+|.... .+++..|+
T Consensus       156 ~~~~~~~Gv~i~~~~~V~~i~~~~~-~~-~V~~~~g-~i~ad~vV~A~G~~s~-~l~~~~g~  213 (393)
T PRK11728        156 AELIQARGGEIRLGAEVTALDEHAN-GV-VVRTTQG-EYEARTLINCAGLMSD-RLAKMAGL  213 (393)
T ss_pred             HHHHHhCCCEEEcCCEEEEEEecCC-eE-EEEECCC-EEEeCEEEECCCcchH-HHHHHhCC
Confidence            3444677999999999999875433 33 5667766 7999999999998764 45554444

>PRK06475 salicylate hydroxylase; Provisional

Probab=97.90  E-value=0.00015  Score=71.86  Aligned_cols=99  Identities=16%  Similarity=0.238  Sum_probs=69.7

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc--------------------------c-----------------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------------------------Q-----------------  170 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l--------------------------~-----------------  170 (414)
                      ++|+|||||+.|+-+|..|++.|.+|+++++.+.+.                          .                 
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~   82 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR   82 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence            789999999999999999999999999999773210                          0                 


Q ss_pred             ccc-------------------C-HHHHHHHHHHHHh-CCcEEEcCceEEEEEecCCCcEEEEEe---CCCcEEecCEEE
Q 014997          171 RLF-------------------T-PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKL---EDGSTIDADTIV  226 (414)
Q Consensus       171 ~~~-------------------~-~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~~~v~~---~~g~~i~~D~vi  226 (414)
                      ..+                   . ..+.+.+.+.+.+ .|+++++++++++++..+++ + .+.+   .+++.+.+|+||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~-v-~v~~~~~~~~~~~~adlvI  160 (400)
T PRK06475         83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNS-I-TATIIRTNSVETVSAAYLI  160 (400)
T ss_pred             eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCc-e-EEEEEeCCCCcEEecCEEE
Confidence            000                   0 1122334444444 47999999999999865433 2 3333   344679999999


Q ss_pred             EccCCcCC
Q 014997          227 IGIGAKPT  234 (414)
Q Consensus       227 ~a~G~~p~  234 (414)
                      -|-|....
T Consensus       161 gADG~~S~  168 (400)
T PRK06475        161 ACDGVWSM  168 (400)
T ss_pred             ECCCccHh
Confidence            99998653

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=97.90  E-value=0.00013  Score=75.23  Aligned_cols=100  Identities=24%  Similarity=0.302  Sum_probs=71.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc----------------------------------------c-
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------------------------R-  171 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~----------------------------------------~-  171 (414)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++++.+.+..                                        . 
T Consensus        10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g~   89 (538)
T PRK06183         10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKGR   89 (538)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCCC
Confidence            46799999999999999999999999999998732100                                        0 


Q ss_pred             ---ccC-----------------HHHHHHHHHHHHh-CCcEEEcCceEEEEEecCCCcEEEEEeC--CC--cEEecCEEE
Q 014997          172 ---LFT-----------------PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLE--DG--STIDADTIV  226 (414)
Q Consensus       172 ---~~~-----------------~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~~~v~~~--~g--~~i~~D~vi  226 (414)
                         .++                 +.+.+.+.+.+.+ .|++++.++++++++.++++.  .+.+.  +|  +++.+|.||
T Consensus        90 ~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v--~v~~~~~~G~~~~i~ad~vV  167 (538)
T PRK06183         90 CLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGV--TVTLTDADGQRETVRARYVV  167 (538)
T ss_pred             EEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeE--EEEEEcCCCCEEEEEEEEEE
Confidence               000                 1122334444444 489999999999998765553  34443  56  479999999


Q ss_pred             EccCCcCC
Q 014997          227 IGIGAKPT  234 (414)
Q Consensus       227 ~a~G~~p~  234 (414)
                      -|.|....
T Consensus       168 gADG~~S~  175 (538)
T PRK06183        168 GCDGANSF  175 (538)
T ss_pred             ecCCCchh
Confidence            99998654

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.89  E-value=0.00014  Score=71.42  Aligned_cols=98  Identities=19%  Similarity=0.280  Sum_probs=70.6

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCC----cc----------------ccc-----------------------
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN----HL----------------LQR-----------------------  171 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~----~~----------------l~~-----------------------  171 (414)
                      +|+|||||+.|+-+|..|++.|.+|+++++.+    .+                +..                       
T Consensus         3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~   82 (374)
T PRK06617          3 NTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDNK   82 (374)
T ss_pred             cEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEECC
Confidence            58999999999999999999999999999641    10                000                       


Q ss_pred             ------------------ccCHHHHHHHHHHHHhC-CcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCc
Q 014997          172 ------------------LFTPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  232 (414)
Q Consensus       172 ------------------~~~~~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~  232 (414)
                                        ..-.++.+.+.+.+++. +++++.+++++++..++++  ..+.++++ ++.+|+||-|-|..
T Consensus        83 g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~v~~~~~-~~~adlvIgADG~~  159 (374)
T PRK06617         83 ASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDY--SIIKFDDK-QIKCNLLIICDGAN  159 (374)
T ss_pred             CceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe--EEEEEcCC-EEeeCEEEEeCCCC
Confidence                              00012334444545555 4899999999999765443  25677776 89999999999987


Q ss_pred             CCC
Q 014997          233 PTV  235 (414)
Q Consensus       233 p~~  235 (414)
                      ...
T Consensus       160 S~v  162 (374)
T PRK06617        160 SKV  162 (374)
T ss_pred             chh
Confidence            643

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=97.85  E-value=0.00012  Score=73.85  Aligned_cols=94  Identities=27%  Similarity=0.443  Sum_probs=65.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccc------------------------------------cC-H-
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------------------------------------FT-P-  175 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~------------------------------------~~-~-  175 (414)
                      -.|+|||+|+.|+.+|..++++|.+|+++++.. +-..+                                    ++ + 
T Consensus         3 yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~   81 (450)
T TIGR01421         3 YDYLVIGGGSGGIASARRAAEHGAKALLVEAKK-LGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNWPE   81 (450)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEecccc-cccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCHHH
Confidence            469999999999999999999999999999752 11000                                    00 0 


Q ss_pred             ----------HHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCCh
Q 014997          176 ----------SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       176 ----------~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  236 (414)
                                .+.+.+...+++.||+++.++..  +.  ++.   .|.. +|+.+.+|.+|+|+|.+|...
T Consensus        82 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~--~~--~~~---~v~v-~~~~~~~d~vIiAtGs~p~~p  144 (450)
T TIGR01421        82 LKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHAR--FT--KDG---TVEV-NGRDYTAPHILIATGGKPSFP  144 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE--Ec--cCC---EEEE-CCEEEEeCEEEEecCCCCCCC
Confidence                      11223445567789999988643  22  122   2334 456799999999999998643

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.85  E-value=0.0002  Score=70.75  Aligned_cols=106  Identities=29%  Similarity=0.407  Sum_probs=73.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhC---CCcEEEEeeCC-c-------------c-------------cc-------------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPEN-H-------------L-------------LQ-------------  170 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~---g~~Vtlv~~~~-~-------------~-------------l~-------------  170 (414)
                      -+|+|||+|+.|+-+|..|++.   |.+|+++++.. .             +             ..             
T Consensus         4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~   83 (395)
T PRK05732          4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHIH   83 (395)
T ss_pred             CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEEE
Confidence            4699999999999999999998   99999999831 0             0             00             


Q ss_pred             ---c------ccC---------------HHHHHHHHHHHHh-CCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEE
Q 014997          171 ---R------LFT---------------PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTI  225 (414)
Q Consensus       171 ---~------~~~---------------~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~v  225 (414)
                         .      .+.               ..+.+.+.+.+.+ .|++++.+++++++...+++ + .+.+++|..+.+|.|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~-~-~v~~~~g~~~~a~~v  161 (395)
T PRK05732         84 VSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGS-V-RVTLDDGETLTGRLL  161 (395)
T ss_pred             EecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCe-E-EEEECCCCEEEeCEE
Confidence               0      000               0112233444444 47999999999999754333 2 477788888999999


Q ss_pred             EEccCCcCCChhhhhcCC
Q 014997          226 VIGIGAKPTVSPFERVGL  243 (414)
Q Consensus       226 i~a~G~~p~~~~l~~~gl  243 (414)
                      |.|.|....  +.+..++
T Consensus       162 I~AdG~~S~--vr~~~~~  177 (395)
T PRK05732        162 VAADGSHSA--LREALGI  177 (395)
T ss_pred             EEecCCChh--hHHhhCC
Confidence            999998764  3344444

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.85  E-value=0.00018  Score=71.03  Aligned_cols=99  Identities=23%  Similarity=0.316  Sum_probs=70.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc---------------------------------------c--
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ---------------------------------------R--  171 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~---------------------------------------~--  171 (414)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++++.+....                                       .  
T Consensus         7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~~   86 (388)
T PRK07494          7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGRL   86 (388)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCCC
Confidence            35799999999999999999999999999998632100                                       0  


Q ss_pred             ------cc---------------CHHHHHHHHHHHHhC-CcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEcc
Q 014997          172 ------LF---------------TPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI  229 (414)
Q Consensus       172 ------~~---------------~~~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~  229 (414)
                            .+               ...+.+.+.+.+.+. ++. +.+++|.+++.++++ + .+.+++|+++.+|.||.|.
T Consensus        87 ~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~-~-~v~~~~g~~~~a~~vI~Ad  163 (388)
T PRK07494         87 IRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPREDE-V-TVTLADGTTLSARLVVGAD  163 (388)
T ss_pred             CCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCe-E-EEEECCCCEEEEeEEEEec
Confidence                  00               011223344445554 466 778999999765443 2 4778888899999999999


Q ss_pred             CCcCC
Q 014997          230 GAKPT  234 (414)
Q Consensus       230 G~~p~  234 (414)
                      |....
T Consensus       164 G~~S~  168 (388)
T PRK07494        164 GRNSP  168 (388)
T ss_pred             CCCch
Confidence            98653

>PRK06185 hypothetical protein; Provisional

Probab=97.85  E-value=0.00024  Score=70.66  Aligned_cols=109  Identities=25%  Similarity=0.331  Sum_probs=73.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc--------------------------c--------------c-
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------------------------Q--------------R-  171 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l--------------------------~--------------~-  171 (414)
                      ..+|+|||||++|+-+|..|++.|.+|+++++.+.+.                          .              . 
T Consensus         6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~~   85 (407)
T PRK06185          6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGGR   85 (407)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECCe
Confidence            4579999999999999999999999999999763210                          0              0 


Q ss_pred             ---c--c--------------CHHHHHHHHHHHHh-CCcEEEcCceEEEEEecCCCcEEEE--EeCCCc-EEecCEEEEc
Q 014997          172 ---L--F--------------TPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAV--KLEDGS-TIDADTIVIG  228 (414)
Q Consensus       172 ---~--~--------------~~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~~~v--~~~~g~-~i~~D~vi~a  228 (414)
                         .  +              ...+.+.+.+.+++ .|++++.++++.++..+ ++.+..+  ..++|+ ++.+|.||.|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~-~~~v~~v~~~~~~g~~~i~a~~vI~A  164 (407)
T PRK06185         86 TVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEE-GGRVTGVRARTPDGPGEIRADLVVGA  164 (407)
T ss_pred             EEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEcCCCcEEEEeCEEEEC
Confidence               0  0              01122333444444 48999999999999765 3444333  345664 7999999999


Q ss_pred             cCCcCCChhhhhcCCc
Q 014997          229 IGAKPTVSPFERVGLN  244 (414)
Q Consensus       229 ~G~~p~~~~l~~~gl~  244 (414)
                      .|....  .-+.+++.
T Consensus       165 dG~~S~--vr~~~gi~  178 (407)
T PRK06185        165 DGRHSR--VRALAGLE  178 (407)
T ss_pred             CCCchH--HHHHcCCC
Confidence            998653  33444443

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=97.84  E-value=4.7e-05  Score=80.16  Aligned_cols=92  Identities=21%  Similarity=0.264  Sum_probs=67.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc-------cc-ccCHHHHHHHHHHHHhCCcEEEcCceEEEEEe
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------QR-LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  203 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------~~-~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~  203 (414)
                      .+++|+|||+|+.|+.+|..|+++|.+|+++++.+.+.       +. .++.++.+...+.+++.|+++++++.+. .  
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~-~--  268 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFG-R--  268 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCccc-C--
Confidence            45799999999999999999999999999999887641       11 1345555666677888999999887541 1  


Q ss_pred             cCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997          204 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       204 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (414)
                             .+.+.+. ...+|.||+|+|..+.
T Consensus       269 -------dv~~~~~-~~~~DaVilAtGa~~~  291 (652)
T PRK12814        269 -------DITLEEL-QKEFDAVLLAVGAQKA  291 (652)
T ss_pred             -------ccCHHHH-HhhcCEEEEEcCCCCC
Confidence                   1112221 2359999999998753

>PRK10015 oxidoreductase; Provisional

Probab=97.84  E-value=0.00023  Score=71.31  Aligned_cols=98  Identities=19%  Similarity=0.330  Sum_probs=71.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc------------------cccc-----------------------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL------------------LQRL-----------------------  172 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~------------------l~~~-----------------------  172 (414)
                      -.|+|||+|+.|+-+|..|++.|.+|.++++.+.+                  .+..                       
T Consensus         6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~   85 (429)
T PRK10015          6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEESA   85 (429)
T ss_pred             cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCCCc
Confidence            47999999999999999999999999999976321                  0000                       


Q ss_pred             --c------------------CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCc
Q 014997          173 --F------------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  232 (414)
Q Consensus       173 --~------------------~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~  232 (414)
                        +                  -..+.+++.+.+++.|++++.++.|+.+... ++.+..+.. ++.++.||.||.|.|..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~-~~~v~~v~~-~~~~i~A~~VI~AdG~~  163 (429)
T PRK10015         86 VTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVRE-GNKVTGVQA-GDDILEANVVILADGVN  163 (429)
T ss_pred             eEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEe-CCEEEEEEe-CCeEEECCEEEEccCcc
Confidence              0                  0012234556667889999999999998754 345544444 44579999999999975


Q ss_pred             C
Q 014997          233 P  233 (414)
Q Consensus       233 p  233 (414)
                      .
T Consensus       164 s  164 (429)
T PRK10015        164 S  164 (429)
T ss_pred             h
Confidence            4

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.84  E-value=0.00043  Score=68.95  Aligned_cols=136  Identities=16%  Similarity=0.255  Sum_probs=87.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc----------------------------------------cc
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL----------------------------------------QR  171 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l----------------------------------------~~  171 (414)
                      ..++++|||+|++|+-.|..|.+.|.++++++|.+.+.                                        ++
T Consensus         5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~   84 (448)
T KOG1399|consen    5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPR   84 (448)
T ss_pred             CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcc
Confidence            36899999999999999999999999999999884331                                        11


Q ss_pred             ccC-H-HHHHHHHHHHHhCCc--EEEcCceEEEEEecCCCcEEEEEeCCC----cEEecCEEEEccCCc--CCChhhhhc
Q 014997          172 LFT-P-SLAQRYEQLYQQNGV--KFVKGASIKNLEAGSDGRVAAVKLEDG----STIDADTIVIGIGAK--PTVSPFERV  241 (414)
Q Consensus       172 ~~~-~-~~~~~~~~~l~~~gv--~i~~~~~v~~i~~~~~~~~~~v~~~~g----~~i~~D~vi~a~G~~--p~~~~l~~~  241 (414)
                      .++ . ++.++++...+..++  .+.+++.+.++....+|.- .|.+.++    ++.-||.|++|+|..  |+.+.....
T Consensus        85 ~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW-~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g~  163 (448)
T KOG1399|consen   85 YFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKW-RVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPGP  163 (448)
T ss_pred             cCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCce-eEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCCC
Confidence            111 1 456677777777675  5777887888876543332 3444332    467799999999987  554433332


Q ss_pred             CCcccCCCEEEcCCCCC----CCCcEEEEcc
Q 014997          242 GLNSSVGGIQVDGQFRT----RMPGIFAIGD  268 (414)
Q Consensus       242 gl~~~~g~i~vd~~~~t----~~~~IyA~GD  268 (414)
                      +++.=.|.+.-...++.    ....|..+|-
T Consensus       164 ~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~  194 (448)
T KOG1399|consen  164 GIESFKGKIIHSHDYKSPEKFRDKVVLVVGC  194 (448)
T ss_pred             chhhcCCcceehhhccCcccccCceEEEECC
Confidence            22221233332222222    3466788883

>TIGR00136 gidA glucose-inhibited division protein A

Probab=97.83  E-value=0.00022  Score=73.07  Aligned_cols=98  Identities=19%  Similarity=0.329  Sum_probs=71.0

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc------------------cc-------------------------
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL------------------QR-------------------------  171 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l------------------~~-------------------------  171 (414)
                      .|+|||+|..|+++|..+++.|.+|.++++.....                  ..                         
T Consensus         2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~s   81 (617)
T TIGR00136         2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNSS   81 (617)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecccC
Confidence            58999999999999999999999999998752110                  00                         


Q ss_pred             ----------ccCH-HHHHHHHHHHHhC-CcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcC
Q 014997          172 ----------LFTP-SLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  233 (414)
Q Consensus       172 ----------~~~~-~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p  233 (414)
                                ++++ .+...+.+.+++. |+.++.+ .+..+...+++.+..|.+.+|..+.||.||+|+|.-.
T Consensus        82 kgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL  154 (617)
T TIGR00136        82 KGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL  154 (617)
T ss_pred             CCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence                      0010 1223455556666 7888865 5666654335677889999999999999999999874

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK06370 mercuric reductase; Validated

Probab=97.83  E-value=0.00011  Score=74.47  Aligned_cols=95  Identities=25%  Similarity=0.382  Sum_probs=64.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc-----c-------------------------------cC-H
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----L-------------------------------FT-P  175 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----~-------------------------------~~-~  175 (414)
                      ...|+|||+|+.|+.+|..++++|.+|+++++.. +...     +                               ++ +
T Consensus         5 ~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   83 (463)
T PRK06370          5 RYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL-LGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVDFK   83 (463)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc-cCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccCHH
Confidence            3579999999999999999999999999999752 1000     0                               00 0


Q ss_pred             HH-----------HHHHHHHHHhC-CcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCCh
Q 014997          176 SL-----------AQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       176 ~~-----------~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  236 (414)
                      .+           ...+...+++. ||+++.++.+  +. + ..   .+.. +++++.+|.+|+|||.+|...
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~--~~-~-~~---~v~v-~~~~~~~d~lViATGs~p~~p  148 (463)
T PRK06370         84 AVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHAR--FE-S-PN---TVRV-GGETLRAKRIFINTGARAAIP  148 (463)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEE--Ec-c-CC---EEEE-CcEEEEeCEEEEcCCCCCCCC
Confidence            01           12234455666 9999887643  21 1 22   3344 456799999999999998743

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=97.83  E-value=0.00011  Score=72.00  Aligned_cols=94  Identities=24%  Similarity=0.369  Sum_probs=64.1

Q ss_pred             eEEEECCChHHHHHHHHHHhC--CCcEEEEeeCCccccc----ccCHHHH----H-------------------------
Q 014997          135 KVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQR----LFTPSLA----Q-------------------------  179 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~l~~----~~~~~~~----~-------------------------  179 (414)
                      .|+|||+|..|+.+|..|++.  |.+|.++++.+.+.+.    ....+..    .                         
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~   80 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK   80 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence            479999999999999999987  9999999987633210    1111111    0                         


Q ss_pred             ---------HHHHH-HHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997          180 ---------RYEQL-YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       180 ---------~~~~~-l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (414)
                               .+.+. +++.+..++.+.+|.+++.  +    .+.+.+|+++.+|.||.|.|..+.
T Consensus        81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~--~----~v~l~dg~~~~A~~VI~A~G~~s~  139 (370)
T TIGR01789        81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDA--D----GVDLAPGTRINARSVIDCRGFKPS  139 (370)
T ss_pred             CCceEEEHHHHHHHHHHhhcccEEecCEEEEEeC--C----EEEECCCCEEEeeEEEECCCCCCC
Confidence                     11111 2222344677888888843  2    355688999999999999998764

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=97.82  E-value=1.5e-05  Score=79.87  Aligned_cols=107  Identities=25%  Similarity=0.341  Sum_probs=27.2

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc-----------------------------c--------------
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-----------------------------R--------------  171 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-----------------------------~--------------  171 (414)
                      .|+|||||+.|+-+|..+++.|.+|.|+++.+.+-.                             +              
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~   80 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG   80 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence            489999999999999999999999999998854300                             0              


Q ss_pred             -----ccCH-HHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCC---CcEEecCEEEEccCCcCCChhhhhcC
Q 014997          172 -----LFTP-SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---GSTIDADTIVIGIGAKPTVSPFERVG  242 (414)
Q Consensus       172 -----~~~~-~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~---g~~i~~D~vi~a~G~~p~~~~l~~~g  242 (414)
                           .+++ .....+.+++++.|+++++++.+.++..+ ++++..|.+.+   ..++.++.+|-|+|.   -+++..+|
T Consensus        81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~-~~~i~~V~~~~~~g~~~i~A~~~IDaTG~---g~l~~~aG  156 (428)
T PF12831_consen   81 WVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRD-GGRITGVIVETKSGRKEIRAKVFIDATGD---GDLAALAG  156 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccc---cccccccc
Confidence                 0111 12233556677889999999999999864 56777887765   467999999999993   24555555


Q ss_pred             Ccc
Q 014997          243 LNS  245 (414)
Q Consensus       243 l~~  245 (414)
                      .+.
T Consensus       157 ~~~  159 (428)
T PF12831_consen  157 APY  159 (428)
T ss_dssp             ---
T ss_pred             ccc
Confidence            554

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.82  E-value=5.1e-05  Score=80.12  Aligned_cols=91  Identities=21%  Similarity=0.346  Sum_probs=66.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc-------c-cccCHHHHHHHHHHHHhCCcEEEcCceEEEEEe
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------Q-RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  203 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------~-~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~  203 (414)
                      .+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.       + ..++.++.....+.+++.|++++.++.+..   
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~---  402 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGK---  402 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCC---
Confidence            46899999999999999999999999999999876532       1 113455555556678889999999886521   


Q ss_pred             cCCCcEEEEEeCCCcEEecCEEEEccCCcC
Q 014997          204 GSDGRVAAVKLEDGSTIDADTIVIGIGAKP  233 (414)
Q Consensus       204 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p  233 (414)
                        +     +.+.+. ...+|.|++++|..+
T Consensus       403 --~-----i~~~~~-~~~~DavilAtGa~~  424 (654)
T PRK12769        403 --D-----ISLESL-LEDYDAVFVGVGTYR  424 (654)
T ss_pred             --c-----CCHHHH-HhcCCEEEEeCCCCC
Confidence              0     111111 236999999999854

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=97.82  E-value=0.00013  Score=72.84  Aligned_cols=98  Identities=16%  Similarity=0.251  Sum_probs=68.0

Q ss_pred             eEEEECCChHHHHHHHHHHhCC-CcEEEEeeCCcccccc----cCHH---------------------------------
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHLLQRL----FTPS---------------------------------  176 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~~l~~~----~~~~---------------------------------  176 (414)
                      +|+|||||..|+-+|..|++.| .+|+|+++.+.+-...    +.+.                                 
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~   81 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR   81 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence            6899999999999999999998 5999999874431000    0000                                 


Q ss_pred             --------------------H-HHHHHHHHHh--CCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcC
Q 014997          177 --------------------L-AQRYEQLYQQ--NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  233 (414)
Q Consensus       177 --------------------~-~~~~~~~l~~--~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p  233 (414)
                                          + ...+.+.|.+  .+..++.+++|++++.++++  ..+.+.+|+++.+|.||.|.|...
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vVgADG~~S  159 (414)
T TIGR03219        82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEE--VQVLFTDGTEYRCDLLIGADGIKS  159 (414)
T ss_pred             ecCccceeeeeccccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCc--EEEEEcCCCEEEeeEEEECCCccH
Confidence                                0 0112222222  14567889999999865444  367888999999999999999765


Q ss_pred             C
Q 014997          234 T  234 (414)
Q Consensus       234 ~  234 (414)
                      .
T Consensus       160 ~  160 (414)
T TIGR03219       160 A  160 (414)
T ss_pred             H
Confidence            3

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.81  E-value=0.00015  Score=73.41  Aligned_cols=95  Identities=26%  Similarity=0.375  Sum_probs=64.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc-----cc------------------------------C-HHH
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----LF------------------------------T-PSL  177 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----~~------------------------------~-~~~  177 (414)
                      -+++|||+|+.|+.+|..++++|.+|.++++.. +-..     +.                              + .++
T Consensus         5 yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   83 (462)
T PRK06416          5 YDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGIDFKKV   83 (462)
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccCHHHH
Confidence            469999999999999999999999999999764 2100     00                              0 111


Q ss_pred             HHH-----------HHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCC-CcEEecCEEEEccCCcCC
Q 014997          178 AQR-----------YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED-GSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       178 ~~~-----------~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~-g~~i~~D~vi~a~G~~p~  234 (414)
                      .++           +...+++.||+++.+. ++.++   ... ..+...+ ++++.+|.+|+|+|.+|.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~~~---~~~-~~v~~~~~~~~~~~d~lViAtGs~p~  147 (462)
T PRK06416         84 QEWKNGVVNRLTGGVEGLLKKNKVDIIRGE-AKLVD---PNT-VRVMTEDGEQTYTAKNIILATGSRPR  147 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEcc---CCE-EEEecCCCcEEEEeCEEEEeCCCCCC
Confidence            111           3345677899999874 33332   122 2344323 467999999999999985

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=97.81  E-value=0.0011  Score=66.61  Aligned_cols=138  Identities=20%  Similarity=0.300  Sum_probs=89.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCc-EEEEeeCCccc-------------------------c----cccC--HHHHH
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLL-------------------------Q----RLFT--PSLAQ  179 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~-Vtlv~~~~~~l-------------------------~----~~~~--~~~~~  179 (414)
                      ...+|+|||+|++|+-+|..|++.|.. +.++++++.+-                         +    ..++  ..+..
T Consensus         7 ~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~   86 (443)
T COG2072           7 THTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKD   86 (443)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHH
Confidence            346899999999999999999999998 99999884321                         0    0111  12567


Q ss_pred             HHHHHHHhCCcE--EEcCceEEEEEecCCCcEEEEEeCCCcE--EecCEEEEccCCc--CCChhhhhcCCcccCCCEEEc
Q 014997          180 RYEQLYQQNGVK--FVKGASIKNLEAGSDGRVAAVKLEDGST--IDADTIVIGIGAK--PTVSPFERVGLNSSVGGIQVD  253 (414)
Q Consensus       180 ~~~~~l~~~gv~--i~~~~~v~~i~~~~~~~~~~v~~~~g~~--i~~D~vi~a~G~~--p~~~~l~~~gl~~~~g~i~vd  253 (414)
                      ++...+++.++.  +..++.|..+..++++..-.|.+++|..  +.||.||+|+|.-  |+..-+  .|++.-.|.+.=.
T Consensus        87 y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~--~G~~~f~g~~~HS  164 (443)
T COG2072          87 YIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDF--AGLDEFKGRILHS  164 (443)
T ss_pred             HHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCC--CCccCCCceEEch
Confidence            777888877654  3455566666656666666788888765  5599999999973  333222  2333222332222


Q ss_pred             CC----CCCCCCcEEEEccccc
Q 014997          254 GQ----FRTRMPGIFAIGDVAA  271 (414)
Q Consensus       254 ~~----~~t~~~~IyA~GD~a~  271 (414)
                      .+    ..-.-++|-.||--++
T Consensus       165 ~~~~~~~~~~GKrV~VIG~GaS  186 (443)
T COG2072         165 ADWPNPEDLRGKRVLVIGAGAS  186 (443)
T ss_pred             hcCCCccccCCCeEEEECCCcc
Confidence            11    1224477888885544

>PRK09897 hypothetical protein; Provisional

Probab=97.79  E-value=0.00036  Score=71.31  Aligned_cols=99  Identities=17%  Similarity=0.209  Sum_probs=66.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhCC--CcEEEEeeCCcccc-----------------------------------------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQ-----------------------------------------  170 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l~-----------------------------------------  170 (414)
                      ++|+|||+|+.|+-+|..|.+.+  .+|+|+++...+..                                         
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~   81 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL   81 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence            57999999999999999998764  47999998532210                                         


Q ss_pred             -----------------cc-cCHHHHHH---HHHHHHhCC--cEEEcCceEEEEEecCCCcEEEEEeCC-CcEEecCEEE
Q 014997          171 -----------------RL-FTPSLAQR---YEQLYQQNG--VKFVKGASIKNLEAGSDGRVAAVKLED-GSTIDADTIV  226 (414)
Q Consensus       171 -----------------~~-~~~~~~~~---~~~~l~~~g--v~i~~~~~v~~i~~~~~~~~~~v~~~~-g~~i~~D~vi  226 (414)
                                       +. ++.-+...   +.+.+.+.|  +.++.+++|+.++..+++  ..+.+.+ |..+.+|.||
T Consensus        82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g--~~V~t~~gg~~i~aD~VV  159 (534)
T PRK09897         82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAG--VMLATNQDLPSETFDLAV  159 (534)
T ss_pred             HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCE--EEEEECCCCeEEEcCEEE
Confidence                             00 00001111   222334555  788888899999865443  2466655 4679999999


Q ss_pred             EccCCcCC
Q 014997          227 IGIGAKPT  234 (414)
Q Consensus       227 ~a~G~~p~  234 (414)
                      +|+|..++
T Consensus       160 LAtGh~~p  167 (534)
T PRK09897        160 IATGHVWP  167 (534)
T ss_pred             ECCCCCCC
Confidence            99998543

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.78  E-value=0.00021  Score=72.35  Aligned_cols=96  Identities=35%  Similarity=0.507  Sum_probs=62.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccc-----cCHH-----------------------------HH-
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-----FTPS-----------------------------LA-  178 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~-----~~~~-----------------------------~~-  178 (414)
                      -.|+|||+|+.|+.+|..++++|.+|+++++...+-..+     .+..                             +. 
T Consensus         4 ~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~   83 (466)
T PRK06115          4 YDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNLAQ   83 (466)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCHHH
Confidence            369999999999999999999999999999743221111     0100                             00 


Q ss_pred             -------------HHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCc--EEecCEEEEccCCcCC
Q 014997          179 -------------QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPT  234 (414)
Q Consensus       179 -------------~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~  234 (414)
                                   ..+...+++.||+++.+.  .++..  +..+ .+...+|+  ++.+|.+|+|||.+|.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~--a~~~~--~~~v-~v~~~~g~~~~~~~d~lVIATGs~p~  149 (466)
T PRK06115         84 MMKQKDESVEALTKGVEFLFRKNKVDWIKGW--GRLDG--VGKV-VVKAEDGSETQLEAKDIVIATGSEPT  149 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE--EEEcc--CCEE-EEEcCCCceEEEEeCEEEEeCCCCCC
Confidence                         111223445567777654  24431  2222 34555664  6999999999999985

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=97.77  E-value=0.00034  Score=68.80  Aligned_cols=58  Identities=22%  Similarity=0.400  Sum_probs=40.3

Q ss_pred             HHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhcC
Q 014997          181 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG  242 (414)
Q Consensus       181 ~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~g  242 (414)
                      +.+.+++.|++++.+++|+++..+ ++.+ .|.++++ ++.+|.||+|+|.... .++...+
T Consensus       151 l~~~~~~~g~~~~~~~~V~~i~~~-~~~~-~v~~~~~-~i~a~~vV~aaG~~~~-~l~~~~g  208 (380)
T TIGR01377       151 LQELAEAHGATVRDGTKVVEIEPT-ELLV-TVKTTKG-SYQANKLVVTAGAWTS-KLLSPLG  208 (380)
T ss_pred             HHHHHHHcCCEEECCCeEEEEEec-CCeE-EEEeCCC-EEEeCEEEEecCcchH-HHhhhcc
Confidence            334456679999999999999764 3333 4666665 7999999999997543 3444444

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PLN02661 Putative thiazole synthesis

Probab=97.77  E-value=0.00067  Score=65.09  Aligned_cols=101  Identities=19%  Similarity=0.267  Sum_probs=69.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhC-CCcEEEEeeCCcccc----------cc----------------cC-----------
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPENHLLQ----------RL----------------FT-----------  174 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~l~----------~~----------------~~-----------  174 (414)
                      .-.|+|||+|..|+-+|..|++. |.+|+++++...+-.          ..                ++           
T Consensus        92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~ha  171 (357)
T PLN02661         92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKHA  171 (357)
T ss_pred             cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecch
Confidence            35899999999999999999975 899999998743211          00                00           


Q ss_pred             HHHHHHHH-HHHHhCCcEEEcCceEEEEEecCCCcEEEEEeC------C--C------cEEecCEEEEccCCcCC
Q 014997          175 PSLAQRYE-QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE------D--G------STIDADTIVIGIGAKPT  234 (414)
Q Consensus       175 ~~~~~~~~-~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~------~--g------~~i~~D~vi~a~G~~p~  234 (414)
                      ......+. +.+++.||+++.++.+.++..+ ++++..+.+.      +  +      ..+.++.||+|||..+.
T Consensus       172 ~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~-~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g~  245 (357)
T PLN02661        172 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDGP  245 (357)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeCeEeeeEEec-CCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCCc
Confidence            01111222 3344578999999999988754 5666666531      1  1      26899999999997653

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=97.76  E-value=0.00022  Score=66.36  Aligned_cols=103  Identities=18%  Similarity=0.291  Sum_probs=73.2

Q ss_pred             cCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCc--EEecCEEEEccCCcCCChhhhh----------
Q 014997          173 FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVSPFER----------  240 (414)
Q Consensus       173 ~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~~~~l~~----------  240 (414)
                      ++-.+.+.+...+++.|..+.++.+|...+- .+++++.|.+.+..  .+.+|..|+|+|.--...+..+          
T Consensus       256 lGiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~-~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae~d~I~EPIf~  334 (421)
T COG3075         256 LGIRLHNQLQRQFEQLGGLWMPGDEVKKATC-KGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAERDKIYEPIFD  334 (421)
T ss_pred             hhhhHHHHHHHHHHHcCceEecCCceeeeee-eCCeEEEEEecccccCCCChhHeeeeccccccccchhhhhhhhcchhh
Confidence            3445677888889999999999999998874 46788888888875  4669999999997543222111          


Q ss_pred             cCCcc------------------cCCCEEEcCCCCC-----CCCcEEEEccccccCCcc
Q 014997          241 VGLNS------------------SVGGIQVDGQFRT-----RMPGIFAIGDVAAFPLKM  276 (414)
Q Consensus       241 ~gl~~------------------~~g~i~vd~~~~t-----~~~~IyA~GD~a~~~~~~  276 (414)
                      +.+..                  ..=|+.+|+++|.     .+.|+||+|.+....++.
T Consensus       335 ldi~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGfdpi  393 (421)
T COG3075         335 LDILQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFDPI  393 (421)
T ss_pred             cccccCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCCcHH
Confidence            11100                  0126888988885     357899999998877653

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.75  E-value=0.00034  Score=77.15  Aligned_cols=101  Identities=19%  Similarity=0.176  Sum_probs=69.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccccc----------CHHHHHHHHHHHHhC-CcEEEcCceEEEE
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLF----------TPSLAQRYEQLYQQN-GVKFVKGASIKNL  201 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~----------~~~~~~~~~~~l~~~-gv~i~~~~~v~~i  201 (414)
                      ..+|+|||+|+.|+..|..+++.|.+|+++++.+.+.....          ..++...+.+.+++. ++++++++.|..+
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i  242 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAFGY  242 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEEEE
Confidence            35799999999999999999999999999998765432111          122323344555555 5999999999887


Q ss_pred             EecCCCcEEEEE-e--------CC---C--cEEecCEEEEccCCcCCC
Q 014997          202 EAGSDGRVAAVK-L--------ED---G--STIDADTIVIGIGAKPTV  235 (414)
Q Consensus       202 ~~~~~~~~~~v~-~--------~~---g--~~i~~D~vi~a~G~~p~~  235 (414)
                      ..  ++.+..+. .        ..   +  .++.+|.||+|+|..+..
T Consensus       243 ~~--~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~  288 (985)
T TIGR01372       243 YD--HNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERP  288 (985)
T ss_pred             ec--CCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcC
Confidence            53  22221111 0        00   1  268999999999998753

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=97.75  E-value=0.00013  Score=71.21  Aligned_cols=98  Identities=22%  Similarity=0.389  Sum_probs=75.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCC--CcEEEEeeCCccc------cc---ccCHHHHHHHHHHHHhCCcEEEcCceEEEE
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLL------QR---LFTPSLAQRYEQLYQQNGVKFVKGASIKNL  201 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l------~~---~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i  201 (414)
                      .++++|+|+|+.|.-++..++..|  -+++++.+...+.      +.   ...........+.+++.||++++++.|+.+
T Consensus        74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v~~~  153 (478)
T KOG1336|consen   74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLLTVGEGLAKRTPEFYKEKGIELILGTSVVKA  153 (478)
T ss_pred             cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchhcccceeeccccccccChhhHhhcCceEEEcceeEEe
Confidence            578999999999999999998887  3577776553221      11   122344455567789999999999999999


Q ss_pred             EecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997          202 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       202 ~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (414)
                      +-..    ..+.+++|+.+++|.+++|||..|.
T Consensus       154 D~~~----K~l~~~~Ge~~kys~LilATGs~~~  182 (478)
T KOG1336|consen  154 DLAS----KTLVLGNGETLKYSKLIIATGSSAK  182 (478)
T ss_pred             eccc----cEEEeCCCceeecceEEEeecCccc
Confidence            7432    2788999999999999999999664

>TIGR00275 flavoprotein, HI0933 family

Probab=97.74  E-value=0.00022  Score=70.72  Aligned_cols=94  Identities=17%  Similarity=0.364  Sum_probs=68.1

Q ss_pred             EEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc----------------------c----------------------
Q 014997          137 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------L----------------------  172 (414)
Q Consensus       137 vVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~----------------------~----------------------  172 (414)
                      +|||+|..|+-+|..+++.|.+|+++++.+.+...                      .                      
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~   80 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID   80 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence            58999999999999999999999999976432110                      0                      


Q ss_pred             -----------------c-----CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccC
Q 014997          173 -----------------F-----TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG  230 (414)
Q Consensus       173 -----------------~-----~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G  230 (414)
                                       +     ...+.+.+.+.+++.|+++++++.|.++...+ + ...+.+ +++++.+|.||+|+|
T Consensus        81 ~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~-~-~~~v~~-~~~~i~ad~VIlAtG  157 (400)
T TIGR00275        81 FFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDD-N-GFGVET-SGGEYEADKVILATG  157 (400)
T ss_pred             HHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecC-C-eEEEEE-CCcEEEcCEEEECCC
Confidence                             0     01223344556677899999999999997543 3 234555 456799999999999


Q ss_pred             CcC
Q 014997          231 AKP  233 (414)
Q Consensus       231 ~~p  233 (414)
                      ...
T Consensus       158 ~~s  160 (400)
T TIGR00275       158 GLS  160 (400)
T ss_pred             Ccc
Confidence            753

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK06126 hypothetical protein; Provisional

Probab=97.72  E-value=0.00042  Score=71.68  Aligned_cols=102  Identities=25%  Similarity=0.366  Sum_probs=69.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc------------------------------c------------
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL------------------------------Q------------  170 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l------------------------------~------------  170 (414)
                      ..+|+|||||+.|+-+|..|+++|.+|+|+++.+.+.                              +            
T Consensus         7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~~   86 (545)
T PRK06126          7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFTR   86 (545)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEec
Confidence            4679999999999999999999999999999772210                              0            


Q ss_pred             -------cc-c--------------------------C-HHHHHHHHHHHHh-CCcEEEcCceEEEEEecCCCcEEEEEe
Q 014997          171 -------RL-F--------------------------T-PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKL  214 (414)
Q Consensus       171 -------~~-~--------------------------~-~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~~~v~~  214 (414)
                             +. +                          + ..+...+.+.+++ .|+++++++++++++.++++....+..
T Consensus        87 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~  166 (545)
T PRK06126         87 LTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVED  166 (545)
T ss_pred             CCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEE
Confidence                   00 0                          0 0122233344444 489999999999998664443222221


Q ss_pred             -CCCc--EEecCEEEEccCCcCC
Q 014997          215 -EDGS--TIDADTIVIGIGAKPT  234 (414)
Q Consensus       215 -~~g~--~i~~D~vi~a~G~~p~  234 (414)
                       .+|+  ++.+|.||.|.|....
T Consensus       167 ~~~g~~~~i~ad~vVgADG~~S~  189 (545)
T PRK06126        167 LDGGESLTIRADYLVGCDGARSA  189 (545)
T ss_pred             CCCCcEEEEEEEEEEecCCcchH
Confidence             3453  6899999999998653

>PRK06996 hypothetical protein; Provisional

Probab=97.70  E-value=0.00037  Score=69.08  Aligned_cols=99  Identities=18%  Similarity=0.259  Sum_probs=72.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCC----CcEEEEeeCCcc------------------cc-------------------
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWK----LDTTIIFPENHL------------------LQ-------------------  170 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g----~~Vtlv~~~~~~------------------l~-------------------  170 (414)
                      ...+|+|||||+.|+-+|..|++.|    .+|+++++.+..                  +.                   
T Consensus        10 ~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~   89 (398)
T PRK06996         10 PDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQ   89 (398)
T ss_pred             CCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEec
Confidence            4468999999999999999999986    469999975210                  00                   


Q ss_pred             --c------------------cc-CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCC---cEEecCEEE
Q 014997          171 --R------------------LF-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDADTIV  226 (414)
Q Consensus       171 --~------------------~~-~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g---~~i~~D~vi  226 (414)
                        .                  .. -..+.+.+.+.+++.|++++.++++++++.+.++.  .+.+.++   +++.||+||
T Consensus        90 ~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v--~v~~~~~~g~~~i~a~lvI  167 (398)
T PRK06996         90 RGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGV--TLALGTPQGARTLRARIAV  167 (398)
T ss_pred             CCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeE--EEEECCCCcceEEeeeEEE
Confidence              0                  00 02345566777788899999999999997654443  4566654   589999999


Q ss_pred             EccCCc
Q 014997          227 IGIGAK  232 (414)
Q Consensus       227 ~a~G~~  232 (414)
                      -|-|..
T Consensus       168 gADG~~  173 (398)
T PRK06996        168 QAEGGL  173 (398)
T ss_pred             ECCCCC
Confidence            999964

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=97.70  E-value=0.00051  Score=69.00  Aligned_cols=100  Identities=21%  Similarity=0.332  Sum_probs=71.6

Q ss_pred             eEEEECCChHHHHHHHHHHh----CCCcEEEEeeCC--ccc--------------------------------cc-----
Q 014997          135 KVVVVGGGYIGMEVAAAAVG----WKLDTTIIFPEN--HLL--------------------------------QR-----  171 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~----~g~~Vtlv~~~~--~~l--------------------------------~~-----  171 (414)
                      .|+|||||+.|+-+|..|++    .|.+|+++++.+  ...                                ..     
T Consensus         2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~~   81 (437)
T TIGR01989         2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSDR   81 (437)
T ss_pred             cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhhc
Confidence            58999999999999999998    799999999832  100                                00     


Q ss_pred             ------------------ccC--------------HHHHHHHHHHHHhC---CcEEEcCceEEEEEec-----CCCcEEE
Q 014997          172 ------------------LFT--------------PSLAQRYEQLYQQN---GVKFVKGASIKNLEAG-----SDGRVAA  211 (414)
Q Consensus       172 ------------------~~~--------------~~~~~~~~~~l~~~---gv~i~~~~~v~~i~~~-----~~~~~~~  211 (414)
                                        .++              ..+.+.+.+.+++.   +++++.++++.+++..     +++....
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~  161 (437)
T TIGR01989        82 IQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVH  161 (437)
T ss_pred             CCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceE
Confidence                              000              11223344555555   4999999999999632     1223346


Q ss_pred             EEeCCCcEEecCEEEEccCCcCC
Q 014997          212 VKLEDGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       212 v~~~~g~~i~~D~vi~a~G~~p~  234 (414)
                      +.+.+|+++.+|+||-|-|....
T Consensus       162 v~~~~g~~i~a~llVgADG~~S~  184 (437)
T TIGR01989       162 ITLSDGQVLYTKLLIGADGSNSN  184 (437)
T ss_pred             EEEcCCCEEEeeEEEEecCCCCh
Confidence            78899999999999999998764

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>TIGR02053 MerA mercuric reductase

Probab=97.69  E-value=0.00033  Score=70.90  Aligned_cols=94  Identities=21%  Similarity=0.411  Sum_probs=63.6

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccccc----------------------------------C------
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLF----------------------------------T------  174 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~----------------------------------~------  174 (414)
                      .++|||+|+.|+.+|..++++|.+|.++++.+ +...++                                  +      
T Consensus         2 DvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~   80 (463)
T TIGR02053         2 DLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELLE   80 (463)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHHH
Confidence            58999999999999999999999999999752 111100                                  0      


Q ss_pred             --HHHHH-----HHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCc-EEecCEEEEccCCcCCCh
Q 014997          175 --PSLAQ-----RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       175 --~~~~~-----~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~-~i~~D~vi~a~G~~p~~~  236 (414)
                        .++..     .+.+.+++.||+++.+.. ..+    +..  .|.+.+|+ .+.+|.+|+|+|.+|...
T Consensus        81 ~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~-~~~----~~~--~v~v~~g~~~~~~~~lIiATGs~p~~p  143 (463)
T TIGR02053        81 GKREVVEELRHEKYEDVLSSYGVDYLRGRA-RFK----DPK--TVKVDLGREVRGAKRFLIATGARPAIP  143 (463)
T ss_pred             HHHHHHHHHhhhhHHHHHHhCCcEEEEEEE-EEc----cCC--EEEEcCCeEEEEeCEEEEcCCCCCCCC
Confidence              01111     123456778999987653 222    122  45556653 689999999999998643

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=97.68  E-value=0.00055  Score=67.16  Aligned_cols=47  Identities=26%  Similarity=0.428  Sum_probs=35.9

Q ss_pred             HHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997          185 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       185 l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (414)
                      +.+.|++++.+++|+++...++ . ..+.+++| .+.+|.||+|+|....
T Consensus       159 ~~~~gv~i~~~~~v~~i~~~~~-~-~~v~~~~g-~~~a~~vV~A~G~~~~  205 (376)
T PRK11259        159 AREAGAELLFNEPVTAIEADGD-G-VTVTTADG-TYEAKKLVVSAGAWVK  205 (376)
T ss_pred             HHHCCCEEECCCEEEEEEeeCC-e-EEEEeCCC-EEEeeEEEEecCcchh
Confidence            4567899999999999976433 3 35677777 6999999999997643

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=97.68  E-value=0.00066  Score=67.19  Aligned_cols=100  Identities=19%  Similarity=0.172  Sum_probs=71.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc--c-----------------------------------------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--Q-----------------------------------------  170 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l--~-----------------------------------------  170 (414)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+...  .                                         
T Consensus         3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g~   82 (392)
T PRK08243          3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDGR   82 (392)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECCE
Confidence            579999999999999999999999999999875310  0                                         


Q ss_pred             --c-cc-------------CHHHHHHHHHHHHhCCcEEEcCceEEEEEe-cCCCcEEEEEe-CCCc--EEecCEEEEccC
Q 014997          171 --R-LF-------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEA-GSDGRVAAVKL-EDGS--TIDADTIVIGIG  230 (414)
Q Consensus       171 --~-~~-------------~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~-~~~~~~~~v~~-~~g~--~i~~D~vi~a~G  230 (414)
                        . .+             ...+.+.+.+...+.|+++++++++++++. ++++  ..|.+ .+|+  ++.+|+||-|-|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~--~~V~~~~~G~~~~i~ad~vVgADG  160 (392)
T PRK08243         83 RHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDR--PYVTYEKDGEEHRLDCDFIAGCDG  160 (392)
T ss_pred             EEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCc--eEEEEEcCCeEEEEEeCEEEECCC
Confidence              0 00             011223344444667999999999999875 3222  24555 4664  689999999999


Q ss_pred             CcCCC
Q 014997          231 AKPTV  235 (414)
Q Consensus       231 ~~p~~  235 (414)
                      .....
T Consensus       161 ~~S~v  165 (392)
T PRK08243        161 FHGVS  165 (392)
T ss_pred             CCCch
Confidence            87643

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=97.68  E-value=0.0018  Score=63.88  Aligned_cols=55  Identities=31%  Similarity=0.451  Sum_probs=39.3

Q ss_pred             CCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 014997          248 GGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA  303 (414)
Q Consensus       248 g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~  303 (414)
                      |||.||.+.||+.|++||+|.|+....---++.+ ..+.-.+...|..+|++|.+.
T Consensus       342 GGI~vD~~GrTsi~gLYAiGEvA~TGlHGANRLA-SNSLLE~vV~g~~aA~~i~~~  396 (518)
T COG0029         342 GGIAVDANGRTSIPGLYAIGEVACTGLHGANRLA-SNSLLECLVFGKRAAEDIAGR  396 (518)
T ss_pred             ccEEECCCCcccCcccEEeeeecccccccchhhh-hhhHHHHHHHHHHHHHHhhcc
Confidence            6899999999999999999999875322111211 223345777788888888863

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=97.65  E-value=7.2e-05  Score=73.87  Aligned_cols=34  Identities=24%  Similarity=0.209  Sum_probs=31.5

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  168 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  168 (414)
                      +|+|||||..|+|+|..|+++|.+|+++++.+.+
T Consensus         2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~   35 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK   35 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence            6899999999999999999999999999987654

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=97.65  E-value=0.00082  Score=67.58  Aligned_cols=61  Identities=15%  Similarity=0.256  Sum_probs=43.5

Q ss_pred             HHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEe--CCCc--EEecCEEEEccCC-cCCChhhh
Q 014997          179 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL--EDGS--TIDADTIVIGIGA-KPTVSPFE  239 (414)
Q Consensus       179 ~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~--~~g~--~i~~D~vi~a~G~-~p~~~~l~  239 (414)
                      ..+.+.+++.|+++++++.++++..++++++..+..  .+++  .+.++.||+|+|. ..|.++++
T Consensus       134 ~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~n~~m~~  199 (439)
T TIGR01813       134 QKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGSNKEMIA  199 (439)
T ss_pred             HHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCCCHHHHH
Confidence            445555677899999999999998765666665554  3443  4789999999994 45544443

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=97.64  E-value=0.00046  Score=67.81  Aligned_cols=97  Identities=23%  Similarity=0.285  Sum_probs=69.8

Q ss_pred             eEEEECCChHHHHHHHHH--HhCCCcEEEEeeCCcc--ccc---------------------------------------
Q 014997          135 KVVVVGGGYIGMEVAAAA--VGWKLDTTIIFPENHL--LQR---------------------------------------  171 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l--~~~g~~Vtlv~~~~~~--l~~---------------------------------------  171 (414)
                      .|+|||+|+.|+-+|..|  .+.|.+|.++++.+..  -..                                       
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~   80 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP   80 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence            379999999999999999  7789999999876433  000                                       


Q ss_pred             --cc-CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997          172 --LF-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       172 --~~-~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (414)
                        .+ ...+.+.+.+.+.+.| .+..+..|.+|+..++  ...+.+++|+++.|+.||-|.|..+.
T Consensus        81 Y~~i~~~~f~~~l~~~~~~~~-~~~~~~~V~~i~~~~~--~~~v~~~~g~~i~a~~VvDa~g~~~~  143 (374)
T PF05834_consen   81 YCMIDRADFYEFLLERAAAGG-VIRLNARVTSIEETGD--GVLVVLADGRTIRARVVVDARGPSSP  143 (374)
T ss_pred             eEEEEHHHHHHHHHHHhhhCC-eEEEccEEEEEEecCc--eEEEEECCCCEEEeeEEEECCCcccc
Confidence              00 1123344555556445 4566788999986544  34678899999999999999996644

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PLN02546 glutathione reductase

Probab=97.63  E-value=0.00037  Score=71.85  Aligned_cols=94  Identities=19%  Similarity=0.388  Sum_probs=64.6

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeC---------Ccc---------------c------c---c----------
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE---------NHL---------------L------Q---R----------  171 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~---------~~~---------------l------~---~----------  171 (414)
                      .++|||+|+.|+.+|..++++|++|.++++.         ..+               +      .   .          
T Consensus        81 DvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~~~~  160 (558)
T PLN02546         81 DLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWKYET  160 (558)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCcccCC
Confidence            6999999999999999999999999999951         110               0      0   0          


Q ss_pred             --ccC------------HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCCh
Q 014997          172 --LFT------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       172 --~~~------------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  236 (414)
                        .++            ..+...+.+.+++.||+++.+. .+.+..   .   .+.. +|+++.+|.+|+|+|.+|...
T Consensus       161 ~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~-a~~vd~---~---~V~v-~G~~~~~D~LVIATGs~p~~P  231 (558)
T PLN02546        161 EPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGR-GKIVDP---H---TVDV-DGKLYTARNILIAVGGRPFIP  231 (558)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEccC---C---EEEE-CCEEEECCEEEEeCCCCCCCC
Confidence              000            0122334556777899998763 333432   1   3444 577899999999999998644

>PRK07538 hypothetical protein; Provisional

Probab=97.62  E-value=0.00065  Score=67.70  Aligned_cols=98  Identities=20%  Similarity=0.263  Sum_probs=67.1

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc----------------------------------cc-------
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------------LF-------  173 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------------~~-------  173 (414)
                      +|+|||||+.|+-+|..|++.|.+|+++++.+.+.+.                                  .+       
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~~   81 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQRI   81 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCEE
Confidence            6899999999999999999999999999987432100                                  00       


Q ss_pred             -------------------CHHHHHHHHHHHHh-CC-cEEEcCceEEEEEecCCCcEEEEEeCC-----CcEEecCEEEE
Q 014997          174 -------------------TPSLAQRYEQLYQQ-NG-VKFVKGASIKNLEAGSDGRVAAVKLED-----GSTIDADTIVI  227 (414)
Q Consensus       174 -------------------~~~~~~~~~~~l~~-~g-v~i~~~~~v~~i~~~~~~~~~~v~~~~-----g~~i~~D~vi~  227 (414)
                                         -..+.+.+.+.+.+ .| +.++.++++++++.++++.+  +.+.+     ++++.+|+||-
T Consensus        82 ~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~--~~~~~~~~g~~~~~~adlvIg  159 (413)
T PRK07538         82 WSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTV--VFLGDRAGGDLVSVRGDVLIG  159 (413)
T ss_pred             eeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceE--EEEeccCCCccceEEeeEEEE
Confidence                               00111223333333 35 57999999999986655533  33333     24899999999


Q ss_pred             ccCCcCC
Q 014997          228 GIGAKPT  234 (414)
Q Consensus       228 a~G~~p~  234 (414)
                      |-|....
T Consensus       160 ADG~~S~  166 (413)
T PRK07538        160 ADGIHSA  166 (413)
T ss_pred             CCCCCHH
Confidence            9998653

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=97.62  E-value=0.00082  Score=68.80  Aligned_cols=107  Identities=20%  Similarity=0.255  Sum_probs=76.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc-----------------------------------------
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----------------------------------------  171 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----------------------------------------  171 (414)
                      .-.|+|||+|..|+-+|..+++.|.+|.|+++.+.+-..                                         
T Consensus        61 ~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~d  140 (506)
T PRK06481         61 KYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGTND  140 (506)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCCCC
Confidence            347999999999999999999999999999976421000                                         


Q ss_pred             --------------------------------------c--------cCHHHHHHHHHHHHhCCcEEEcCceEEEEEecC
Q 014997          172 --------------------------------------L--------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS  205 (414)
Q Consensus       172 --------------------------------------~--------~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~  205 (414)
                                                            .        .+..+...+.+.+++.|+++++++.++++..+ 
T Consensus       141 ~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~-  219 (506)
T PRK06481        141 KALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITEK-  219 (506)
T ss_pred             HHHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEec-
Confidence                                                  0        00112334555567789999999999999754 


Q ss_pred             CCcEEEEEe--CCC--cEEecCEEEEccC-CcCCChhhhh
Q 014997          206 DGRVAAVKL--EDG--STIDADTIVIGIG-AKPTVSPFER  240 (414)
Q Consensus       206 ~~~~~~v~~--~~g--~~i~~D~vi~a~G-~~p~~~~l~~  240 (414)
                      ++++..+..  .++  ..+.++.||+|+| +.+|.+++++
T Consensus       220 ~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~m~~~  259 (506)
T PRK06481        220 DGKVTGVKVKINGKETKTISSKAVVVTTGGFGANKDMIAK  259 (506)
T ss_pred             CCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHHHHHH
Confidence            566655554  343  3689999999998 6666555443

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=97.61  E-value=0.001  Score=66.13  Aligned_cols=52  Identities=19%  Similarity=0.397  Sum_probs=39.7

Q ss_pred             HHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcC
Q 014997          181 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  233 (414)
Q Consensus       181 ~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p  233 (414)
                      +.+.+++.|++++.++.|+++...+++.+..+.+.+| .+.++.||+++|...
T Consensus       189 l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~  240 (407)
T TIGR01373       189 YARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHS  240 (407)
T ss_pred             HHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhh
Confidence            4456678899999999999997544455556777777 599999888877543

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK13984 putative oxidoreductase; Provisional

Probab=97.61  E-value=0.00018  Score=75.44  Aligned_cols=91  Identities=19%  Similarity=0.188  Sum_probs=66.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc--------cccCHHHHHHHHHHHHhCCcEEEcCceEEEEEe
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  203 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~--------~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~  203 (414)
                      .+++|+|||+|+.|+.+|..|+++|.+|+++++.+.+..        ..+++++.....+.+++.|++++.++.+..-  
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~--  359 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGKD--  359 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCCc--
Confidence            578899999999999999999999999999998765411        0123444455556788899999999876310  


Q ss_pred             cCCCcEEEEEeCCCcEEecCEEEEccCCcC
Q 014997          204 GSDGRVAAVKLEDGSTIDADTIVIGIGAKP  233 (414)
Q Consensus       204 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p  233 (414)
                              +.+++ ....+|.||+|+|..+
T Consensus       360 --------~~~~~-~~~~yD~vilAtGa~~  380 (604)
T PRK13984        360 --------IPLEE-LREKHDAVFLSTGFTL  380 (604)
T ss_pred             --------CCHHH-HHhcCCEEEEEcCcCC
Confidence                    11111 1357999999999764

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.61  E-value=0.00018  Score=74.72  Aligned_cols=92  Identities=22%  Similarity=0.255  Sum_probs=65.7

Q ss_pred             cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc--------cccCHHHHHHHHHHHHhCCcEEEcCceE-EEE
Q 014997          131 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------RLFTPSLAQRYEQLYQQNGVKFVKGASI-KNL  201 (414)
Q Consensus       131 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~--------~~~~~~~~~~~~~~l~~~gv~i~~~~~v-~~i  201 (414)
                      ..+++|+|||+|++|+.+|..|+++|.+|+++++.+.+..        ..++.+....-.+.+++.|++++.++.+ ..+
T Consensus       135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~  214 (564)
T PRK12771        135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDI  214 (564)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcC
Confidence            4678999999999999999999999999999998765421        1123444444445677899999988765 222


Q ss_pred             EecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997          202 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       202 ~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (414)
                      ...      .  +    ...+|.||+++|..+.
T Consensus       215 ~~~------~--~----~~~~D~Vi~AtG~~~~  235 (564)
T PRK12771        215 TLE------Q--L----EGEFDAVFVAIGAQLG  235 (564)
T ss_pred             CHH------H--H----HhhCCEEEEeeCCCCC
Confidence            110      0  1    1248999999998753

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=97.57  E-value=0.0006  Score=69.00  Aligned_cols=30  Identities=33%  Similarity=0.421  Sum_probs=29.0

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEee
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFP  164 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~  164 (414)
                      .|+|||+|+.|+.+|..|+++|.+|.++++
T Consensus         3 DvvVIG~G~aGl~aA~~la~~G~~v~lie~   32 (461)
T TIGR01350         3 DVVVIGGGPGGYVAAIRAAQLGLKVALVEK   32 (461)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence            689999999999999999999999999998

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=97.57  E-value=0.0013  Score=65.48  Aligned_cols=33  Identities=21%  Similarity=0.320  Sum_probs=30.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      ++|+|||+|.+|+-+|..|++.|.+|+++++++
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~   34 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR   34 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            479999999999999999999999999999864

>PRK13748 putative mercuric reductase; Provisional

Probab=97.54  E-value=0.0012  Score=68.58  Aligned_cols=97  Identities=27%  Similarity=0.398  Sum_probs=63.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc---------------------------c---cc------cC-HH
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---------------------------Q---RL------FT-PS  176 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l---------------------------~---~~------~~-~~  176 (414)
                      ..++|||+|+.|+.+|..+++.|.+|.++++. .+-                           +   ..      .+ ..
T Consensus        99 ~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  177 (561)
T PRK13748         99 LHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDRSR  177 (561)
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCHHH
Confidence            58999999999999999999999999999976 210                           0   00      00 01


Q ss_pred             HHHH------------HHHHHHhC-CcEEEcCceEEEEEecCCCcEEEEEeCCCc--EEecCEEEEccCCcCCCh
Q 014997          177 LAQR------------YEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       177 ~~~~------------~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~~~  236 (414)
                      +.++            ....+++. +|+++.+. +..+.   .. ...|.+.+|+  ++.+|.+|+|+|.+|...
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~---~~-~~~v~~~~g~~~~~~~d~lviAtGs~p~~p  247 (561)
T PRK13748        178 LLAQQQARVDELRHAKYEGILDGNPAITVLHGE-ARFKD---DQ-TLIVRLNDGGERVVAFDRCLIATGASPAVP  247 (561)
T ss_pred             HHHHHHHHHHHHhcccHHHHHhccCCeEEEEEE-EEEec---CC-EEEEEeCCCceEEEEcCEEEEcCCCCCCCC
Confidence            1111            11223443 78888763 33332   22 2345556663  699999999999998744

>TIGR02028 ChlP geranylgeranyl reductase

Probab=97.54  E-value=0.0014  Score=65.09  Aligned_cols=99  Identities=19%  Similarity=0.301  Sum_probs=64.7

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc---------------------------------c--------c-
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ---------------------------------R--------L-  172 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~---------------------------------~--------~-  172 (414)
                      +|+|||+|+.|+-+|..|++.|.+|.++++.+.+..                                 .        . 
T Consensus         2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~~   81 (398)
T TIGR02028         2 RVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRTL   81 (398)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccCC
Confidence            689999999999999999999999999997632100                                 0        0 


Q ss_pred             --------cC-HHHHHHHHHHHHhCCcEEEcCceEEEEEec-CCCcEEEEEe--CC-----C--cEEecCEEEEccCCcC
Q 014997          173 --------FT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAG-SDGRVAAVKL--ED-----G--STIDADTIVIGIGAKP  233 (414)
Q Consensus       173 --------~~-~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~-~~~~~~~v~~--~~-----g--~~i~~D~vi~a~G~~p  233 (414)
                              ++ ..+.+.+.+...+.|++++.++ +..+... ..+....+.+  .+     |  .++.++.||.|.|..+
T Consensus        82 ~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S  160 (398)
T TIGR02028        82 KEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS  160 (398)
T ss_pred             CCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcch
Confidence                    00 1122234455677899998775 6666421 1122223332  21     3  4799999999999876


Q ss_pred             C
Q 014997          234 T  234 (414)
Q Consensus       234 ~  234 (414)
                      .
T Consensus       161 ~  161 (398)
T TIGR02028       161 R  161 (398)
T ss_pred             H
Confidence            3

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=97.54  E-value=0.00019  Score=76.95  Aligned_cols=34  Identities=18%  Similarity=0.109  Sum_probs=32.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      .+++|+|||+|+.|+.+|..|+++|++||++++.
T Consensus       382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~  415 (1028)
T PRK06567        382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL  415 (1028)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence            5789999999999999999999999999999975

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=97.52  E-value=0.0012  Score=65.18  Aligned_cols=96  Identities=21%  Similarity=0.380  Sum_probs=66.5

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeC-Ccc--------------c------------------cc----------
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHL--------------L------------------QR----------  171 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~-~~~--------------l------------------~~----------  171 (414)
                      +|+|||+|+.|+-+|..|++.|.+|.++++. ++.              +                  +.          
T Consensus         2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (388)
T TIGR02023         2 DVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIPS   81 (388)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccCC
Confidence            5899999999999999999999999999986 211              0                  00          


Q ss_pred             ---c---cC-HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCC------C--cEEecCEEEEccCCcC
Q 014997          172 ---L---FT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED------G--STIDADTIVIGIGAKP  233 (414)
Q Consensus       172 ---~---~~-~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~------g--~~i~~D~vi~a~G~~p  233 (414)
                         .   ++ ..+.+.+.+...+.|++++.+ .++++..++++.  .+.+.+      |  .++.+|.||.|.|...
T Consensus        82 ~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~--~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S  155 (388)
T TIGR02023        82 EDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDGV--TLTYRTPKKGAGGEKGSVEADVVIGADGANS  155 (388)
T ss_pred             CCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCeE--EEEEEeccccCCCcceEEEeCEEEECCCCCc
Confidence               0   01 112234555567789999865 588887554432  344432      2  4799999999999765

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=97.51  E-value=0.0012  Score=65.21  Aligned_cols=100  Identities=19%  Similarity=0.237  Sum_probs=68.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc--c----cc-----------------------------------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--Q----RL-----------------------------------  172 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l--~----~~-----------------------------------  172 (414)
                      .+|+|||+|+.|+-+|..|++.|.+|+|+++.+...  .    ..                                   
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~   82 (390)
T TIGR02360         3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDGQ   82 (390)
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCCE
Confidence            579999999999999999999999999999875310  0    00                                   


Q ss_pred             -----------------cC-HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeC-CCc--EEecCEEEEccCC
Q 014997          173 -----------------FT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGS--TIDADTIVIGIGA  231 (414)
Q Consensus       173 -----------------~~-~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~-~g~--~i~~D~vi~a~G~  231 (414)
                                       ++ ..+...+.+.+.+.|+.++.+.++..+...++.. ..|.+. +|+  ++.+|+||-|-|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~-~~V~~~~~g~~~~i~adlvIGADG~  161 (390)
T TIGR02360        83 RFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDR-PYVTFERDGERHRLDCDFIAGCDGF  161 (390)
T ss_pred             EEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCc-cEEEEEECCeEEEEEeCEEEECCCC
Confidence                             00 1122334444556688888888777765322222 245664 675  6899999999998


Q ss_pred             cCC
Q 014997          232 KPT  234 (414)
Q Consensus       232 ~p~  234 (414)
                      ...
T Consensus       162 ~S~  164 (390)
T TIGR02360       162 HGV  164 (390)
T ss_pred             chh
Confidence            654

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=97.51  E-value=0.0011  Score=70.26  Aligned_cols=32  Identities=22%  Similarity=0.400  Sum_probs=30.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      .+|+|||||.+|+-+|..|+++|.+|+|+++.
T Consensus       261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~  292 (662)
T PRK01747        261 RDAAIIGGGIAGAALALALARRGWQVTLYEAD  292 (662)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCeEEEEecC
Confidence            47999999999999999999999999999976

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=97.51  E-value=0.0014  Score=58.07  Aligned_cols=103  Identities=22%  Similarity=0.259  Sum_probs=67.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccc------c------------------------------C-H
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------F------------------------------T-P  175 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~------~------------------------------~-~  175 (414)
                      ...|+|||+|++|+-+|..|++.|.+|.++++...+-...      |                              + .
T Consensus        17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~~   96 (230)
T PF01946_consen   17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADSV   96 (230)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-HH
T ss_pred             cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcHH
Confidence            4679999999999999999999999999999874331100      0                              0 1


Q ss_pred             HHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeC-----------CCcEEecCEEEEccCCcCCC
Q 014997          176 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-----------DGSTIDADTIVIGIGAKPTV  235 (414)
Q Consensus       176 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~-----------~g~~i~~D~vi~a~G~~p~~  235 (414)
                      +....+....-+.|++++....|..+--.+++++..+...           |--.+.+..||-+||...+.
T Consensus        97 ~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v  167 (230)
T PF01946_consen   97 EFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEV  167 (230)
T ss_dssp             HHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSS
T ss_pred             HHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHH
Confidence            1222333333558999999999988865444677766652           22379999999999998754

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=97.51  E-value=0.0012  Score=67.01  Aligned_cols=31  Identities=32%  Similarity=0.284  Sum_probs=29.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEee
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP  164 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~  164 (414)
                      ..++|||+|+.|+.+|..+++.|.+|.++++
T Consensus         5 ~DviIIG~G~aG~~aA~~~~~~g~~v~lie~   35 (475)
T PRK06327          5 FDVVVIGAGPGGYVAAIRAAQLGLKVACIEA   35 (475)
T ss_pred             eeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence            4699999999999999999999999999997

>PRK14694 putative mercuric reductase; Provisional

Probab=97.51  E-value=0.0011  Score=67.14  Aligned_cols=98  Identities=23%  Similarity=0.389  Sum_probs=64.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc---------------------------cc--ccc-----CH---
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL---------------------------LQ--RLF-----TP---  175 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~---------------------------l~--~~~-----~~---  175 (414)
                      .-.|+|||+|+.|+.+|..|++.|.+|.++++.. +                           .+  ..+     ..   
T Consensus         6 ~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~-~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~   84 (468)
T PRK14694          6 NLHIAVIGSGGSAMAAALKATERGARVTLIERGT-IGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVVDRS   84 (468)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc-cccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCccCHH
Confidence            3479999999999999999999999999999753 1                           00  000     00   


Q ss_pred             HHHHH------------HHHHHHhC-CcEEEcCceEEEEEecCCCcEEEEEeCCC--cEEecCEEEEccCCcCCCh
Q 014997          176 SLAQR------------YEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       176 ~~~~~------------~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~  236 (414)
                      .+.+.            ....+++. +|+++.+ .+..++.  +.  ..|.+.+|  +++.+|.+|+|||.+|...
T Consensus        85 ~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g-~v~~id~--~~--~~V~~~~g~~~~~~~d~lViATGs~p~~p  155 (468)
T PRK14694         85 ALLAQQQARVEELRESKYQSILRENAAITVLNG-EARFVDE--RT--LTVTLNDGGEQTVHFDRAFIGTGARPAEP  155 (468)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEE-EEEEecC--CE--EEEEecCCCeEEEECCEEEEeCCCCCCCC
Confidence            11111            11123333 7888876 3555542  22  35666776  3799999999999998644

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=97.50  E-value=0.0011  Score=67.02  Aligned_cols=48  Identities=27%  Similarity=0.479  Sum_probs=35.6

Q ss_pred             HHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCc
Q 014997          181 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  232 (414)
Q Consensus       181 ~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~  232 (414)
                      +.+.+++.|++|+.++.|++++.+ + . ..|.+.+| ++.||.||+|+|.-
T Consensus       189 L~~~a~~~Gv~i~~~t~V~~i~~~-~-~-~~v~t~~g-~v~A~~VV~Atga~  236 (460)
T TIGR03329       189 LRRVALELGVEIHENTPMTGLEEG-Q-P-AVVRTPDG-QVTADKVVLALNAW  236 (460)
T ss_pred             HHHHHHHcCCEEECCCeEEEEeeC-C-c-eEEEeCCc-EEECCEEEEccccc
Confidence            334446789999999999998742 2 2 35677776 69999999999854

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PLN02507 glutathione reductase

Probab=97.49  E-value=0.0012  Score=67.35  Aligned_cols=98  Identities=21%  Similarity=0.270  Sum_probs=64.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC---------Cccccc-----ccCH------------------------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE---------NHLLQR-----LFTP------------------------  175 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~---------~~~l~~-----~~~~------------------------  175 (414)
                      -.++|||+|+.|+.+|..++++|.+|.++++.         ..+-..     +.+.                        
T Consensus        26 yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~~~~  105 (499)
T PLN02507         26 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGWEIN  105 (499)
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCcccC
Confidence            36999999999999999999999999999951         111000     0000                        


Q ss_pred             -----H--------------HHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCc--EEecCEEEEccCCcCC
Q 014997          176 -----S--------------LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPT  234 (414)
Q Consensus       176 -----~--------------~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~  234 (414)
                           +              +...+.+.+++.||+++.+ .+..+..    ....|.+.+|+  ++.+|.+|+|+|.+|.
T Consensus       106 ~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g-~a~~vd~----~~v~V~~~~g~~~~~~~d~LIIATGs~p~  180 (499)
T PLN02507        106 EKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEG-EGKIVGP----NEVEVTQLDGTKLRYTAKHILIATGSRAQ  180 (499)
T ss_pred             CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecC----CEEEEEeCCCcEEEEEcCEEEEecCCCCC
Confidence                 0              0111223455678888876 3334431    22356667775  5899999999999986


Q ss_pred             Ch
Q 014997          235 VS  236 (414)
Q Consensus       235 ~~  236 (414)
                      ..
T Consensus       181 ~p  182 (499)
T PLN02507        181 RP  182 (499)
T ss_pred             CC
Confidence            43

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=97.49  E-value=0.0013  Score=64.35  Aligned_cols=31  Identities=32%  Similarity=0.496  Sum_probs=28.8

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      +|+|||+|.+|+-+|..|++.|.+|+++++.
T Consensus         2 dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~   32 (365)
T TIGR03364         2 DLIIVGAGILGLAHAYAAARRGLSVTVIERS   32 (365)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            5899999999999999999999999999875

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PTZ00058 glutathione reductase; Provisional

Probab=97.49  E-value=0.0012  Score=68.01  Aligned_cols=31  Identities=29%  Similarity=0.459  Sum_probs=29.5

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      .++|||+|+.|+.+|..+++.|.+|.++++.
T Consensus        50 DvvVIG~G~aG~~aA~~aa~~G~~ValIEk~   80 (561)
T PTZ00058         50 DLIVIGGGSGGMAAARRAARNKAKVALVEKD   80 (561)
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEecc
Confidence            6999999999999999999999999999975

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=97.48  E-value=0.00031  Score=69.76  Aligned_cols=98  Identities=23%  Similarity=0.370  Sum_probs=68.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC------------------------------------------ccccc
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN------------------------------------------HLLQR  171 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~------------------------------------------~~l~~  171 (414)
                      -.|+|||||..|+|.|.+.+++|.++.+++...                                          ++|..
T Consensus         5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN~   84 (621)
T COG0445           5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLNS   84 (621)
T ss_pred             CceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhccC
Confidence            479999999999999999999999988877551                                          11111


Q ss_pred             ccCH------------HHHHHHHHHHHh-CCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCc
Q 014997          172 LFTP------------SLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  232 (414)
Q Consensus       172 ~~~~------------~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~  232 (414)
                      .-+|            .....+++.+++ .++.++.+. |..+.-.++.++..|.+.+|..+.|+.||+++|.-
T Consensus        85 sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~-v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTF  157 (621)
T COG0445          85 SKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGE-VEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTF  157 (621)
T ss_pred             CCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhh-hHHHhhcCCCeEEEEEeCCCCeeecCEEEEeeccc
Confidence            1111            123444555544 467776654 45554332335889999999999999999999964

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.47  E-value=0.00085  Score=59.21  Aligned_cols=98  Identities=15%  Similarity=0.270  Sum_probs=71.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEee--------------------CCcccccccCHHHHHHHHHHHHhCCcEE
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP--------------------ENHLLQRLFTPSLAQRYEQLYQQNGVKF  192 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~--------------------~~~~l~~~~~~~~~~~~~~~l~~~gv~i  192 (414)
                      ..+|+|||+|+.+...|.++++...+-.+++-                    -+.+-....++++.+.+++.-++.|.++
T Consensus         8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i   87 (322)
T KOG0404|consen    8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEI   87 (322)
T ss_pred             eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhccee
Confidence            46899999999999999999887655555542                    2333334467889999999999999999


Q ss_pred             EcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997          193 VKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       193 ~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (414)
                      ++.+ |.++...  .....+.+ +.+.+.||.||+++|....
T Consensus        88 ~tEt-Vskv~~s--skpF~l~t-d~~~v~~~avI~atGAsAk  125 (322)
T KOG0404|consen   88 ITET-VSKVDLS--SKPFKLWT-DARPVTADAVILATGASAK  125 (322)
T ss_pred             eeee-hhhcccc--CCCeEEEe-cCCceeeeeEEEeccccee
Confidence            9854 6666532  23334444 5567999999999998764

>PRK11445 putative oxidoreductase; Provisional

Probab=97.46  E-value=0.0019  Score=62.89  Aligned_cols=96  Identities=21%  Similarity=0.241  Sum_probs=66.5

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc--------ccccCH-------------------------------
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------QRLFTP-------------------------------  175 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l--------~~~~~~-------------------------------  175 (414)
                      +|+|||+|+.|+-+|..|++. .+|+++++.+.+.        ...+.+                               
T Consensus         3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~~~   81 (351)
T PRK11445          3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTIDL   81 (351)
T ss_pred             eEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEecc
Confidence            689999999999999999998 9999999775210        000000                               


Q ss_pred             ------------------HHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEe-CCCc--EEecCEEEEccCCcCC
Q 014997          176 ------------------SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL-EDGS--TIDADTIVIGIGAKPT  234 (414)
Q Consensus       176 ------------------~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~-~~g~--~i~~D~vi~a~G~~p~  234 (414)
                                        ++.+.+.+ ..+.|++++.++.++.++..+++.  .+.+ .+|+  ++.||.||.|.|....
T Consensus        82 ~~~~~~~~~~~~~~i~R~~~~~~L~~-~~~~gv~v~~~~~v~~i~~~~~~~--~v~~~~~g~~~~i~a~~vV~AdG~~S~  158 (351)
T PRK11445         82 ANSLTRNYQRSYINIDRHKFDLWLKS-LIPASVEVYHNSLCRKIWREDDGY--HVIFRADGWEQHITARYLVGADGANSM  158 (351)
T ss_pred             cccchhhcCCCcccccHHHHHHHHHH-HHhcCCEEEcCCEEEEEEEcCCEE--EEEEecCCcEEEEEeCEEEECCCCCcH
Confidence                              01111122 234689999999999998654442  3443 5664  6899999999998653

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=97.46  E-value=0.0011  Score=56.50  Aligned_cols=41  Identities=29%  Similarity=0.512  Sum_probs=31.4

Q ss_pred             CcEEE-cCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCC
Q 014997          189 GVKFV-KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  231 (414)
Q Consensus       189 gv~i~-~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~  231 (414)
                      |+++. ...+|..+...+++  ..+.+.+|..+.+|.||+|+|.
T Consensus       114 ~i~v~~~~~~V~~i~~~~~~--~~v~~~~g~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen  114 GITVRHVRAEVVDIRRDDDG--YRVVTADGQSIRADAVVLATGH  155 (156)
T ss_pred             CcEEEEEeeEEEEEEEcCCc--EEEEECCCCEEEeCEEEECCCC
Confidence            54443 34578888876555  3678899999999999999996

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=97.46  E-value=0.0019  Score=65.41  Aligned_cols=105  Identities=21%  Similarity=0.260  Sum_probs=73.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc-c------c-------c--------------c-----------cC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL-L------Q-------R--------------L-----------FT  174 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~-l------~-------~--------------~-----------~~  174 (414)
                      -.|+|||+|..|+-+|..+++.|.+|+|+++.+.. .      .       .              .           .+
T Consensus         5 ~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (466)
T PRK08274          5 VDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGGRTD   84 (466)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhCCCCC
Confidence            47999999999999999999999999999975420 0      0       0              0           00


Q ss_pred             ----------------------------------------------HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCc
Q 014997          175 ----------------------------------------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR  208 (414)
Q Consensus       175 ----------------------------------------------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~  208 (414)
                                                                    ..+...+.+.+++.|++++.++.++++..+ +++
T Consensus        85 ~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~-~g~  163 (466)
T PRK08274         85 EALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVEIRYDAPVTALELD-DGR  163 (466)
T ss_pred             HHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCe
Confidence                                                          012233444556789999999999999754 566


Q ss_pred             EEEEEeC--CC--cEEecCEEEEccCCc-CCChhhh
Q 014997          209 VAAVKLE--DG--STIDADTIVIGIGAK-PTVSPFE  239 (414)
Q Consensus       209 ~~~v~~~--~g--~~i~~D~vi~a~G~~-p~~~~l~  239 (414)
                      +..+...  ++  ..+.++.||+|+|-. .|.++++
T Consensus       164 v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~n~~~~~  199 (466)
T PRK08274        164 FVGARAGSAAGGAERIRAKAVVLAAGGFESNREWLR  199 (466)
T ss_pred             EEEEEEEccCCceEEEECCEEEECCCCCCCCHHHHH
Confidence            6666652  33  368999999999843 4433443

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=97.45  E-value=0.0015  Score=67.46  Aligned_cols=32  Identities=22%  Similarity=0.393  Sum_probs=30.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      -.|+|||||.+|+-+|..|+++|.+|+|+++.
T Consensus         7 ~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~   38 (546)
T PRK11101          7 TDVIIIGGGATGAGIARDCALRGLRCILVERH   38 (546)
T ss_pred             ccEEEECcCHHHHHHHHHHHHcCCeEEEEECC
Confidence            46999999999999999999999999999976

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=97.45  E-value=0.00048  Score=62.57  Aligned_cols=100  Identities=17%  Similarity=0.275  Sum_probs=67.9

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc-------------------------------------------
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------------------------------------------  171 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-------------------------------------------  171 (414)
                      +|+|||+|..|+-+|..|+..|.+||+++++.-+..|                                           
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~   82 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTP   82 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeeccc
Confidence            5899999999999999999999999999987211000                                           


Q ss_pred             ------------------ccC-HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCC-cEEecCEEEEccCC
Q 014997          172 ------------------LFT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-STIDADTIVIGIGA  231 (414)
Q Consensus       172 ------------------~~~-~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g-~~i~~D~vi~a~G~  231 (414)
                                        ... +.++. +.+. -....+++++++|+++...++.  -.+..++| ....+|.|++++..
T Consensus        83 ~~~~~~~~~~~~~~d~~pyvg~pgmsa-lak~-LAtdL~V~~~~rVt~v~~~~~~--W~l~~~~g~~~~~~d~vvla~PA  158 (331)
T COG3380          83 AVWTFTGDGSPPRGDEDPYVGEPGMSA-LAKF-LATDLTVVLETRVTEVARTDND--WTLHTDDGTRHTQFDDVVLAIPA  158 (331)
T ss_pred             cccccccCCCCCCCCCCccccCcchHH-HHHH-HhccchhhhhhhhhhheecCCe--eEEEecCCCcccccceEEEecCC
Confidence                              011 11222 2222 3345778888999999766333  36777665 46889999999876


Q ss_pred             cCCChhh
Q 014997          232 KPTVSPF  238 (414)
Q Consensus       232 ~p~~~~l  238 (414)
                      --...+|
T Consensus       159 PQ~~~LL  165 (331)
T COG3380         159 PQTATLL  165 (331)
T ss_pred             Ccchhhc
Confidence            4333333

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.45  E-value=0.0014  Score=66.28  Aligned_cols=32  Identities=34%  Similarity=0.428  Sum_probs=30.0

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      +++|||+|+.|+.+|..+++.|.+|+++++.+
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~   33 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD   33 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence            68999999999999999999999999999863

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=97.45  E-value=0.00035  Score=74.20  Aligned_cols=91  Identities=24%  Similarity=0.361  Sum_probs=69.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc-------c-ccCHHHHHHHHHHHHhCCcEEEcCceEEEEEe
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------R-LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  203 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-------~-~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~  203 (414)
                      .+++|.|||+|+.|+-+|..|.+.|+.|++.+|.+++-.       . -+++.+.+.-.+.+.+.||+|++|+.|-.   
T Consensus      1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk--- 1860 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGK--- 1860 (2142)
T ss_pred             cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeeccccc---
Confidence            478999999999999999999999999999999988632       1 14556666666788999999999876521   


Q ss_pred             cCCCcEEEEEeCCCcEEecCEEEEccCCcC
Q 014997          204 GSDGRVAAVKLEDGSTIDADTIVIGIGAKP  233 (414)
Q Consensus       204 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p  233 (414)
                             .+.+ |+-.-+.|.||+|+|..-
T Consensus      1861 -------~vs~-d~l~~~~daiv~a~gst~ 1882 (2142)
T KOG0399|consen 1861 -------HVSL-DELKKENDAIVLATGSTT 1882 (2142)
T ss_pred             -------cccH-HHHhhccCeEEEEeCCCC
Confidence                   1111 222345799999999763

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=97.44  E-value=0.0021  Score=65.30  Aligned_cols=64  Identities=14%  Similarity=0.263  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHh----CC--cEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhcCC
Q 014997          177 LAQRYEQLYQQ----NG--VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL  243 (414)
Q Consensus       177 ~~~~~~~~l~~----~g--v~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl  243 (414)
                      +...+.+.+++    .|  +++++++.|+.++..+ +....|.+++| ++.+|.||+|+|.-.. .+++..|+
T Consensus       213 L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~-~~~~~V~T~~G-~i~A~~VVvaAG~~S~-~La~~~Gi  282 (497)
T PTZ00383        213 LSESFVKHARRDALVPGKKISINLNTEVLNIERSN-DSLYKIHTNRG-EIRARFVVVSACGYSL-LFAQKMGY  282 (497)
T ss_pred             HHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecC-CCeEEEEECCC-EEEeCEEEECcChhHH-HHHHHhCC
Confidence            34455556677    67  8899999999998642 33446777777 6999999999997653 45666665

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=97.40  E-value=0.0023  Score=63.77  Aligned_cols=56  Identities=30%  Similarity=0.517  Sum_probs=39.2

Q ss_pred             HHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhcC
Q 014997          184 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG  242 (414)
Q Consensus       184 ~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~g  242 (414)
                      .+++.|++++.++.|++++.. ++.+..+.+.++ ++.+|.||+|+|.... .++...+
T Consensus       210 ~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~t~~~-~~~a~~VV~a~G~~~~-~l~~~~g  265 (416)
T PRK00711        210 MAEQLGVKFRFNTPVDGLLVE-GGRITGVQTGGG-VITADAYVVALGSYST-ALLKPLG  265 (416)
T ss_pred             HHHHCCCEEEcCCEEEEEEec-CCEEEEEEeCCc-EEeCCEEEECCCcchH-HHHHHhC
Confidence            346678999999999998754 344445666655 7999999999997653 3444433

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=97.40  E-value=0.00099  Score=68.50  Aligned_cols=127  Identities=22%  Similarity=0.437  Sum_probs=88.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhC---CCcEEEEeeCCcc------cccccC-----HHHHHHHHHHHHhCCcEEEcCceE
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPENHL------LQRLFT-----PSLAQRYEQLYQQNGVKFVKGASI  198 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~---g~~Vtlv~~~~~~------l~~~~~-----~~~~~~~~~~l~~~gv~i~~~~~v  198 (414)
                      ..+++|||.|..|.-+...+.+.   -.+||++...+++      +++.+.     +++...-..+++++||+++++..+
T Consensus         3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v   82 (793)
T COG1251           3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKV   82 (793)
T ss_pred             ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCee
Confidence            46899999999999998888774   3678888766543      222222     233334457889999999999999


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhcCCcccCCCEEEcCCCCCCCCcEEEEccccc
Q 014997          199 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA  271 (414)
Q Consensus       199 ~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~g~i~vd~~~~t~~~~IyA~GD~a~  271 (414)
                      ..+....  +  .|..+.|.++.+|-+|+|||..|.........++    ++.+   +| +..+++|.+|++.
T Consensus        83 ~~idr~~--k--~V~t~~g~~~~YDkLilATGS~pfi~PiPG~~~~----~v~~---~R-~i~D~~am~~~ar  143 (793)
T COG1251          83 IQIDRAN--K--VVTTDAGRTVSYDKLIIATGSYPFILPIPGSDLP----GVFV---YR-TIDDVEAMLDCAR  143 (793)
T ss_pred             EEeccCc--c--eEEccCCcEeecceeEEecCccccccCCCCCCCC----CeeE---Ee-cHHHHHHHHHHHh
Confidence            9997542  2  6788899999999999999999975443332221    1211   12 2456667777744

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=97.37  E-value=0.0026  Score=66.70  Aligned_cols=33  Identities=36%  Similarity=0.437  Sum_probs=30.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      .-.|+|||||.+|+-+|..|+++|.+|+++++.
T Consensus        71 ~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~  103 (627)
T PLN02464         71 PLDVLVVGGGATGAGVALDAATRGLRVGLVERE  103 (627)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence            357999999999999999999999999999986

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=97.36  E-value=0.0017  Score=64.74  Aligned_cols=58  Identities=26%  Similarity=0.426  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeC---CCc--EEecCEEEEccCCcCC
Q 014997          176 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGAKPT  234 (414)
Q Consensus       176 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~---~g~--~i~~D~vi~a~G~~p~  234 (414)
                      .+...+.+.+++.|++|+.++.++++..+ ++++..+...   +|+  .+.++.||+|+|-...
T Consensus       142 ~~~~~l~~~~~~~gv~i~~~~~~~~Li~e-~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~  204 (417)
T PF00890_consen  142 ALIEALAKAAEEAGVDIRFNTRVTDLITE-DGRVTGVVAENPADGEFVRIKAKAVILATGGFGG  204 (417)
T ss_dssp             HHHHHHHHHHHHTTEEEEESEEEEEEEEE-TTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred             HHHHHHHHHHhhcCeeeeccceeeeEEEe-CCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence            35566777889999999999999999874 6688777765   454  5889999999997664

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.35  E-value=0.0014  Score=66.34  Aligned_cols=32  Identities=25%  Similarity=0.284  Sum_probs=29.7

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      -.++|||+|+.|+.+|..|++.|.+|.++++.
T Consensus         4 yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~   35 (460)
T PRK06292          4 YDVIVIGAGPAGYVAARRAAKLGKKVALIEKG   35 (460)
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            36999999999999999999999999999983

>PRK07804 L-aspartate oxidase; Provisional

Probab=97.35  E-value=0.0025  Score=65.79  Aligned_cols=99  Identities=23%  Similarity=0.319  Sum_probs=70.7

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc---------------------------------------------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL---------------------------------------------  168 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~---------------------------------------------  168 (414)
                      -.|+|||+|..|+-+|..+++.|.+|+++++....                                             
T Consensus        17 ~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~~~~   96 (541)
T PRK07804         17 ADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVRSLV   96 (541)
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            47999999999999999999999999999875211                                             


Q ss_pred             ----------------cc------------------cc-------cCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCC
Q 014997          169 ----------------LQ------------------RL-------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG  207 (414)
Q Consensus       169 ----------------l~------------------~~-------~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~  207 (414)
                                      +.                  +.       .+..+...+.+.+++.||+++.++.+.++..++++
T Consensus        97 ~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g  176 (541)
T PRK07804         97 AEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDIREHALALDLLTDGTG  176 (541)
T ss_pred             HHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCC
Confidence                            00                  00       01223344555666778999999999998765456


Q ss_pred             cEEEEEeC-------CC-cEEecCEEEEccCCc
Q 014997          208 RVAAVKLE-------DG-STIDADTIVIGIGAK  232 (414)
Q Consensus       208 ~~~~v~~~-------~g-~~i~~D~vi~a~G~~  232 (414)
                      ++..+...       ++ ..+.++.||+|+|-.
T Consensus       177 ~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~  209 (541)
T PRK07804        177 AVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGL  209 (541)
T ss_pred             eEEEEEEEeccCCCCCcEEEEEcCeEEECCCCC
Confidence            66665542       33 368999999999963

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.34  E-value=0.0016  Score=65.99  Aligned_cols=32  Identities=31%  Similarity=0.338  Sum_probs=30.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      ..++|||+|+.|+.+|..++++|.+|+++++.
T Consensus         5 ~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~   36 (466)
T PRK07818          5 YDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK   36 (466)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence            47999999999999999999999999999975

>PRK14727 putative mercuric reductase; Provisional

Probab=97.34  E-value=0.0019  Score=65.65  Aligned_cols=99  Identities=23%  Similarity=0.395  Sum_probs=63.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccc-----------------------------------cCHH-
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-----------------------------------FTPS-  176 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~-----------------------------------~~~~-  176 (414)
                      ..+++|||+|+.|+.+|..|+++|.+|+++++.+.+...+                                   ++.. 
T Consensus        16 ~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   95 (479)
T PRK14727         16 QLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSIDRGL   95 (479)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCccCHHH
Confidence            4579999999999999999999999999999863211000                                   0100 


Q ss_pred             HH-------H-----HHHHHHHhC-CcEEEcCceEEEEEecCCCcEEEEEeCCCc--EEecCEEEEccCCcCCCh
Q 014997          177 LA-------Q-----RYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       177 ~~-------~-----~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~~~  236 (414)
                      +.       .     ...+.++.. ||+++.+.  ..+..  . ....|.+.+|+  ++.+|.+|+|||.+|...
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~--a~f~~--~-~~v~v~~~~g~~~~~~~d~lViATGs~p~~p  165 (479)
T PRK14727         96 LLHQQQARVEELRHAKYQSILDGNPALTLLKGY--ARFKD--G-NTLVVRLHDGGERVLAADRCLIATGSTPTIP  165 (479)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEE--EEEec--C-CEEEEEeCCCceEEEEeCEEEEecCCCCCCC
Confidence            00       0     012223333 78887664  23331  2 22356666764  699999999999998644

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=97.33  E-value=0.0034  Score=63.18  Aligned_cols=99  Identities=19%  Similarity=0.270  Sum_probs=65.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc-----------------c----------------cc-------
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-----------------Q----------------RL-------  172 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-----------------~----------------~~-------  172 (414)
                      .-+|+|||||+.|+-+|..|++.|.+|.++++.+...                 +                ..       
T Consensus        39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~~  118 (450)
T PLN00093         39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGK  118 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEecc
Confidence            3579999999999999999999999999999763210                 0                00       


Q ss_pred             ----------cC-HHHHHHHHHHHHhCCcEEEcCceEEEEEecC--CCcEEEEEeC---------CCcEEecCEEEEccC
Q 014997          173 ----------FT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGS--DGRVAAVKLE---------DGSTIDADTIVIGIG  230 (414)
Q Consensus       173 ----------~~-~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~--~~~~~~v~~~---------~g~~i~~D~vi~a~G  230 (414)
                                ++ ..+.+.+.+..++.|++++.+ .+.++....  ++. ..+.+.         ++.++.+|+||-|.|
T Consensus       119 ~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~-~~v~~~~~~~~~~~g~~~~v~a~~VIgADG  196 (450)
T PLN00093        119 TLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGP-YVIHYTSYDSGSGAGTPKTLEVDAVIGADG  196 (450)
T ss_pred             cCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCc-EEEEEEeccccccCCCccEEEeCEEEEcCC
Confidence                      00 012234555567789999865 466665321  122 234332         234799999999999


Q ss_pred             CcC
Q 014997          231 AKP  233 (414)
Q Consensus       231 ~~p  233 (414)
                      ...
T Consensus       197 ~~S  199 (450)
T PLN00093        197 ANS  199 (450)
T ss_pred             cch
Confidence            755

>PRK07121 hypothetical protein; Validated

Probab=97.28  E-value=0.0039  Score=63.66  Aligned_cols=53  Identities=25%  Similarity=0.332  Sum_probs=38.5

Q ss_pred             HHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCC-Cc--EEec-CEEEEccCCc
Q 014997          180 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED-GS--TIDA-DTIVIGIGAK  232 (414)
Q Consensus       180 ~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~-g~--~i~~-D~vi~a~G~~  232 (414)
                      .+.+.+++.|+++++++.++++..++++++..|...+ ++  .+.+ +.||+|+|--
T Consensus       182 ~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~  238 (492)
T PRK07121        182 PLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGF  238 (492)
T ss_pred             HHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCc
Confidence            3444556778999999999998765556777666532 32  5788 9999999954

>PRK08401 L-aspartate oxidase; Provisional

Probab=97.27  E-value=0.0034  Score=63.59  Aligned_cols=97  Identities=29%  Similarity=0.423  Sum_probs=66.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc---------------------------------------------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL---------------------------------------------  168 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~---------------------------------------------  168 (414)
                      ..|+|||+|..|+-+|..+++.|.+|+|+++.+..                                             
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~~   81 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVIS   81 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            46999999999999999999999999998874210                                             


Q ss_pred             ---------------cc-----------cc------cCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCC
Q 014997          169 ---------------LQ-----------RL------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED  216 (414)
Q Consensus       169 ---------------l~-----------~~------~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~  216 (414)
                                     +.           +.      ....+.+.+.+.+++.||+++.+ .+..+.. +++.+..+.. +
T Consensus        82 ~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~-~~g~v~Gv~~-~  158 (466)
T PRK08401         82 KSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAI-KNGKAYGVFL-D  158 (466)
T ss_pred             HHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEe-eCCEEEEEEE-C
Confidence                           00           00      01123334445556677887765 5666654 3456655655 4


Q ss_pred             CcEEecCEEEEccCCcC
Q 014997          217 GSTIDADTIVIGIGAKP  233 (414)
Q Consensus       217 g~~i~~D~vi~a~G~~p  233 (414)
                      +..+.++.||+|+|...
T Consensus       159 g~~i~a~~VVLATGG~~  175 (466)
T PRK08401        159 GELLKFDATVIATGGFS  175 (466)
T ss_pred             CEEEEeCeEEECCCcCc
Confidence            56799999999999754

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=97.22  E-value=0.0042  Score=58.33  Aligned_cols=58  Identities=24%  Similarity=0.362  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHhCCcEEEcCceEEEEEe-cCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997          177 LAQRYEQLYQQNGVKFVKGASIKNLEA-GSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       177 ~~~~~~~~l~~~gv~i~~~~~v~~i~~-~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (414)
                      ....++..+++.|+.|+.+..++.++. ++.+..+.|.+.+|..+.++.+|+++|.--+
T Consensus       155 slk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~  213 (399)
T KOG2820|consen  155 SLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWIN  213 (399)
T ss_pred             HHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHH
Confidence            345567778999999999999988763 3355667899999999999999999997544

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=97.22  E-value=0.0039  Score=62.54  Aligned_cols=62  Identities=13%  Similarity=0.195  Sum_probs=43.9

Q ss_pred             HHHHHHHHhCCcEEEcCceEEEEEecC-CCcEEEEEeC-CCcEEecCEEEEccC-CcCCChhhhh
Q 014997          179 QRYEQLYQQNGVKFVKGASIKNLEAGS-DGRVAAVKLE-DGSTIDADTIVIGIG-AKPTVSPFER  240 (414)
Q Consensus       179 ~~~~~~l~~~gv~i~~~~~v~~i~~~~-~~~~~~v~~~-~g~~i~~D~vi~a~G-~~p~~~~l~~  240 (414)
                      +.+.+.+++.|+++++++.++++..++ ++.+..+... ++..+.++.||+|+| +..|.+++.+
T Consensus       127 ~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~~~~~  191 (432)
T TIGR02485       127 NALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRDWLRK  191 (432)
T ss_pred             HHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHHHHHh
Confidence            344455677889999999999987643 4666666554 335799999999999 4555555544

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=97.21  E-value=0.00093  Score=65.38  Aligned_cols=71  Identities=20%  Similarity=0.397  Sum_probs=54.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccc------cCHH------HHHHHHHHHHhCCcEEEcCceEEE
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------FTPS------LAQRYEQLYQQNGVKFVKGASIKN  200 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~------~~~~------~~~~~~~~l~~~gv~i~~~~~v~~  200 (414)
                      .++++|||||..|++.|..|++.|.+|+++++.+.+-.++      |+..      +...+.+.-..-+|++++.++|++
T Consensus       124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV~e  203 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAEVEE  203 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeeeeee
Confidence            5789999999999999999999999999999998764432      2221      222333444456899999999999


Q ss_pred             EEe
Q 014997          201 LEA  203 (414)
Q Consensus       201 i~~  203 (414)
                      +..
T Consensus       204 v~G  206 (622)
T COG1148         204 VSG  206 (622)
T ss_pred             ecc
Confidence            863

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=97.19  E-value=0.0011  Score=66.48  Aligned_cols=89  Identities=22%  Similarity=0.292  Sum_probs=68.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc--------ccCHHHHHHHHHHHHhCCcEEEcCceEE-EEE
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIK-NLE  202 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~--------~~~~~~~~~~~~~l~~~gv~i~~~~~v~-~i~  202 (414)
                      .+++|.|||+|+.|+.+|..|++.|++||++++.+.+-..        .++.++.+...+.|++.|++|+.++.+- .+ 
T Consensus       122 tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~i-  200 (457)
T COG0493         122 TGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRDI-  200 (457)
T ss_pred             CCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECCcC-
Confidence            4689999999999999999999999999999988765221        1455778888889999999999988663 11 


Q ss_pred             ecCCCcEEEEEeCCCcEEecCEEEEccCCc
Q 014997          203 AGSDGRVAAVKLEDGSTIDADTIVIGIGAK  232 (414)
Q Consensus       203 ~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~  232 (414)
                                .++. -.-++|.|++++|..
T Consensus       201 ----------t~~~-L~~e~Dav~l~~G~~  219 (457)
T COG0493         201 ----------TLEE-LLKEYDAVFLATGAG  219 (457)
T ss_pred             ----------CHHH-HHHhhCEEEEecccc
Confidence                      1111 123459999999964

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=97.18  E-value=0.005  Score=64.02  Aligned_cols=51  Identities=25%  Similarity=0.317  Sum_probs=37.1

Q ss_pred             HHHHHhCCcEEEcCceEEEEEecCCCcEEEEEe---CCCc--EEecCEEEEccCCcC
Q 014997          182 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKP  233 (414)
Q Consensus       182 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~---~~g~--~i~~D~vi~a~G~~p  233 (414)
                      .+.+++.||+++.++.++++..+ ++++..+..   .+|+  .+.++.||+|+|-..
T Consensus       136 ~~~~~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~  191 (566)
T TIGR01812       136 YEQCLKLGVSFFNEYFALDLIHD-DGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYG  191 (566)
T ss_pred             HHHHHHcCCEEEeccEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCeEEECCCccc
Confidence            33455668999999999998754 566665543   4564  589999999999643

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PF14721 AIF_C: Apoptosis-inducing factor, mitochondrion-associated, C-term; PDB: 3GD4_A 1GV4_A 3GD3_A 1M6I_A

Probab=97.17  E-value=0.0019  Score=51.44  Aligned_cols=32  Identities=13%  Similarity=0.298  Sum_probs=25.0

Q ss_pred             cEEEEEEeCCEEEEEEeecCChHHhhHHHHHHh
Q 014997          349 KIATFWIDSGKLKGVLVESGSPEEFQLLPTLAR  381 (414)
Q Consensus       349 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~  381 (414)
                      |-++||+++++|+|+++ .|-...+...|++|+
T Consensus       100 kGVVfYLrd~~VvGill-WNvf~~~~~AR~ii~  131 (133)
T PF14721_consen  100 KGVVFYLRDDRVVGILL-WNVFNRMPIARKIIA  131 (133)
T ss_dssp             EEEEEEEETTEEEEEEE-ES--S-HHHHHHHHH
T ss_pred             ceEEEEEcCCeEEEEEE-eeccCccHHHHHHhh
Confidence            45789999999999997 788888889999875

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.14  E-value=0.0051  Score=62.60  Aligned_cols=30  Identities=23%  Similarity=0.428  Sum_probs=28.7

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEee
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFP  164 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~  164 (414)
                      .++|||+|+.|+.+|..+++.|.+|.++++
T Consensus         4 DvvVIG~G~aG~~aA~~aa~~G~~v~lie~   33 (484)
T TIGR01438         4 DLIVIGGGSGGLAAAKEAADYGAKVMLLDF   33 (484)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            689999999999999999999999999995

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PLN02985 squalene monooxygenase

Probab=97.13  E-value=0.0062  Score=62.41  Aligned_cols=33  Identities=27%  Similarity=0.278  Sum_probs=30.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      ..+|+|||+|..|+-+|..|++.|.+|+++++.
T Consensus        43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~   75 (514)
T PLN02985         43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERD   75 (514)
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCeEEEEECc
Confidence            357999999999999999999999999999976

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=97.11  E-value=0.0078  Score=61.49  Aligned_cols=57  Identities=18%  Similarity=0.387  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHhCCcEEEcCceEEEEEec-CC--CcEEEEEeC-CCc-----EEecCEEEEccCCcC
Q 014997          177 LAQRYEQLYQQNGVKFVKGASIKNLEAG-SD--GRVAAVKLE-DGS-----TIDADTIVIGIGAKP  233 (414)
Q Consensus       177 ~~~~~~~~l~~~gv~i~~~~~v~~i~~~-~~--~~~~~v~~~-~g~-----~i~~D~vi~a~G~~p  233 (414)
                      +..-+.+.++++||+|++++.|+++..+ ++  ++++.|... +|.     ..+.|.||+++|.-.
T Consensus       228 LV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t  293 (576)
T PRK13977        228 LVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSIT  293 (576)
T ss_pred             HHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCc
Confidence            3345566779999999999999999764 22  567777764 232     367999999999754

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=97.09  E-value=0.0036  Score=60.55  Aligned_cols=101  Identities=23%  Similarity=0.373  Sum_probs=68.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccC----------HHHHHHHHHHHHhC--CcEEEcCceEE
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFT----------PSLAQRYEQLYQQN--GVKFVKGASIK  199 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~----------~~~~~~~~~~l~~~--gv~i~~~~~v~  199 (414)
                      +.++|||+|+|..|+-+...|-..-.+|++|.+++.++-..+-          +.+.+-+....++.  +++++.. .-.
T Consensus        54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~eA-ec~  132 (491)
T KOG2495|consen   54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLEA-ECT  132 (491)
T ss_pred             CCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEec-ccE
Confidence            5689999999999999998888878999999998876432221          34445555555544  5666643 334


Q ss_pred             EEEecCCCcEEE--EEeCCC----cEEecCEEEEccCCcCCC
Q 014997          200 NLEAGSDGRVAA--VKLEDG----STIDADTIVIGIGAKPTV  235 (414)
Q Consensus       200 ~i~~~~~~~~~~--v~~~~g----~~i~~D~vi~a~G~~p~~  235 (414)
                      .++.+  .+.+.  ..++++    ..+.+|.+|+|+|..+++
T Consensus       133 ~iDp~--~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~T  172 (491)
T KOG2495|consen  133 KIDPD--NKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNT  172 (491)
T ss_pred             eeccc--ccEEEEeeeccCCCcceeeecccEEEEeccCCCCC
Confidence            44432  22222  233444    479999999999999886

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=97.09  E-value=0.0091  Score=58.71  Aligned_cols=34  Identities=26%  Similarity=0.424  Sum_probs=31.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      ...+|+|||||.+|+-+|..|++.|.+|+++++.
T Consensus         3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~   36 (387)
T COG0665           3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAG   36 (387)
T ss_pred             CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecC
Confidence            3568999999999999999999999999999976

>PRK08275 putative oxidoreductase; Provisional

Probab=97.08  E-value=0.0085  Score=62.11  Aligned_cols=55  Identities=22%  Similarity=0.286  Sum_probs=40.3

Q ss_pred             HHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEE---eCCCc--EEecCEEEEccCCcC
Q 014997          179 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK---LEDGS--TIDADTIVIGIGAKP  233 (414)
Q Consensus       179 ~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~---~~~g~--~i~~D~vi~a~G~~p  233 (414)
                      ..+.+.+++.||+++.++.+.++..++++++..+.   ..+|+  .+.++.||+|+|-..
T Consensus       141 ~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~  200 (554)
T PRK08275        141 KVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG  200 (554)
T ss_pred             HHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence            44455566789999999999999764456666554   23564  588999999999754

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.07  E-value=0.0076  Score=63.00  Aligned_cols=54  Identities=19%  Similarity=0.216  Sum_probs=39.4

Q ss_pred             HHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEe---CCCc--EEecCEEEEccCCcC
Q 014997          180 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKP  233 (414)
Q Consensus       180 ~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~---~~g~--~i~~D~vi~a~G~~p  233 (414)
                      .+.+.+++.||+++.++.++++..++++++..+..   .+|+  .+.++.||+|+|--.
T Consensus       154 ~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  212 (598)
T PRK09078        154 TLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYG  212 (598)
T ss_pred             HHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence            34444566789999999999887554567777653   3554  688999999999653

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=97.05  E-value=0.0084  Score=62.87  Aligned_cols=32  Identities=31%  Similarity=0.305  Sum_probs=29.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      -.|+|||+|..|+-+|..+++.|.+|.|+++.
T Consensus        30 ~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~   61 (617)
T PTZ00139         30 YDAVVVGAGGAGLRAALGLVELGYKTACISKL   61 (617)
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCcEEEEecc
Confidence            47999999999999999999999999999876

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=97.05  E-value=0.0083  Score=62.81  Aligned_cols=36  Identities=31%  Similarity=0.381  Sum_probs=33.1

Q ss_pred             cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          131 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       131 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      .+..+|+|||||..|+-+|..|++.|.+|+|+++.+
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            456789999999999999999999999999999864

>PRK07846 mycothione reductase; Reviewed

Probab=97.03  E-value=0.0026  Score=64.14  Aligned_cols=92  Identities=17%  Similarity=0.283  Sum_probs=57.5

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc-----cc-----------------------c-------C-HHHH
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-----RL-----------------------F-------T-PSLA  178 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-----~~-----------------------~-------~-~~~~  178 (414)
                      .++|||+|+.|..+|..  ..|.+|.++++.. +-.     .+                       +       + +.+.
T Consensus         3 D~vVIG~G~~g~~aa~~--~~G~~V~lie~~~-~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~   79 (451)
T PRK07846          3 DLIIIGTGSGNSILDER--FADKRIAIVEKGT-FGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWPDIV   79 (451)
T ss_pred             CEEEECCCHHHHHHHHH--HCCCeEEEEeCCC-CCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHHHHH
Confidence            58999999999977654  5699999999751 100     00                       0       0 0011


Q ss_pred             HH-------H-----HHH-HHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCCh
Q 014997          179 QR-------Y-----EQL-YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       179 ~~-------~-----~~~-l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  236 (414)
                      ++       +     ... +++.||+++.+... -+.   ..   .|.+.+|+++.+|.+|+|||.+|...
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~-~~~---~~---~V~v~~g~~~~~d~lViATGs~p~~p  143 (451)
T PRK07846         80 SRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHAR-FIG---PK---TLRTGDGEEITADQVVIAAGSRPVIP  143 (451)
T ss_pred             HHHHHHHHHHhccchhhhhhhhCCcEEEEEEEE-Eec---CC---EEEECCCCEEEeCEEEEcCCCCCCCC
Confidence            11       1     111 44567777776422 121   11   56677788899999999999998644

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=97.02  E-value=0.0078  Score=62.94  Aligned_cols=44  Identities=18%  Similarity=0.265  Sum_probs=33.7

Q ss_pred             CcEEEcCceEEEEEecCCCcEEEEEeC---CCc--EEecCEEEEccCCc
Q 014997          189 GVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGAK  232 (414)
Q Consensus       189 gv~i~~~~~v~~i~~~~~~~~~~v~~~---~g~--~i~~D~vi~a~G~~  232 (414)
                      ||+++.++.+.++..++++++..+...   +|+  .+.++.||+|||--
T Consensus       147 gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~  195 (603)
T TIGR01811       147 LVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGGY  195 (603)
T ss_pred             CcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence            789999999998875555677776653   453  58899999999874

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.00  E-value=0.0023  Score=62.55  Aligned_cols=33  Identities=39%  Similarity=0.489  Sum_probs=29.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      --.|+|||||..|||.|.+.++.|.+.++++.+
T Consensus        28 ~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~   60 (679)
T KOG2311|consen   28 TYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN   60 (679)
T ss_pred             cccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence            347999999999999999999999999888765

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=97.00  E-value=0.0012  Score=47.83  Aligned_cols=33  Identities=18%  Similarity=0.225  Sum_probs=29.5

Q ss_pred             EECCChHHHHHHHHHHhCCCcEEEEeeCCcccc
Q 014997          138 VVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ  170 (414)
Q Consensus       138 VvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  170 (414)
                      |||+|.+|+.+|..|++.|.+|+++++.+++-.
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG   33 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGG   33 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSG
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCc
Confidence            799999999999999999999999999987643

...

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.00  E-value=0.0073  Score=61.82  Aligned_cols=32  Identities=28%  Similarity=0.442  Sum_probs=30.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      -.|+|||||.+|+-+|..|+++|.+|.++++.
T Consensus         7 ~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~   38 (502)
T PRK13369          7 YDLFVIGGGINGAGIARDAAGRGLKVLLCEKD   38 (502)
T ss_pred             cCEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            47999999999999999999999999999987

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=96.98  E-value=0.0066  Score=61.76  Aligned_cols=31  Identities=29%  Similarity=0.311  Sum_probs=28.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhC-CCcEEEEee
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFP  164 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~-g~~Vtlv~~  164 (414)
                      -.++|||+|+.|+.+|..++++ |.+|.+|++
T Consensus         4 ~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~   35 (486)
T TIGR01423         4 FDLVVIGAGSGGLEAGWNAATLYKKRVAVIDV   35 (486)
T ss_pred             cCEEEECCChHHHHHHHHHHHhcCCEEEEEec
Confidence            3689999999999999999996 899999996

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=96.97  E-value=0.01  Score=62.36  Aligned_cols=102  Identities=22%  Similarity=0.336  Sum_probs=69.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhC-CCcEEEEeeCCcccc-----------------------------------------
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPENHLLQ-----------------------------------------  170 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~l~-----------------------------------------  170 (414)
                      .-+|+|||+|+.|+-+|..|+++ |.+|+|+++.+....                                         
T Consensus        32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~~  111 (634)
T PRK08294         32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPDP  111 (634)
T ss_pred             CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCCC
Confidence            45899999999999999999995 999999997722100                                         


Q ss_pred             ----c------c--------------cC-HHHHHHHHHHHHhCC--cEEEcCceEEEEEecCCC-cEEEEEeC------C
Q 014997          171 ----R------L--------------FT-PSLAQRYEQLYQQNG--VKFVKGASIKNLEAGSDG-RVAAVKLE------D  216 (414)
Q Consensus       171 ----~------~--------------~~-~~~~~~~~~~l~~~g--v~i~~~~~v~~i~~~~~~-~~~~v~~~------~  216 (414)
                          .      .              +. ..+.+.+.+.+++.|  +++..++++++++.++++ ....+.+.      +
T Consensus       112 ~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~  191 (634)
T PRK08294        112 ADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHE  191 (634)
T ss_pred             ccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCC
Confidence                0      0              00 013344555566655  578889999999765322 21234443      3


Q ss_pred             C--cEEecCEEEEccCCcCC
Q 014997          217 G--STIDADTIVIGIGAKPT  234 (414)
Q Consensus       217 g--~~i~~D~vi~a~G~~p~  234 (414)
                      |  +++.||.||-|-|.+..
T Consensus       192 g~~~tv~A~~lVGaDGa~S~  211 (634)
T PRK08294        192 GEEETVRAKYVVGCDGARSR  211 (634)
T ss_pred             CceEEEEeCEEEECCCCchH
Confidence            5  57999999999998653

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.96  E-value=0.0026  Score=59.80  Aligned_cols=100  Identities=27%  Similarity=0.400  Sum_probs=77.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC--Ccc-----------cccccCHHHHHHHHHHHHhCCcEEEcCceEE
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE--NHL-----------LQRLFTPSLAQRYEQLYQQNGVKFVKGASIK  199 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~--~~~-----------l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~  199 (414)
                      .-.|+|||||+.|...|.+.+++|.+.-++..+  ..+           .+...++.+...+++..++..|++....+.+
T Consensus       211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra~  290 (520)
T COG3634         211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRAS  290 (520)
T ss_pred             CceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhhhhh
Confidence            357999999999999999999998775443211  111           1223467888899999999999999888888


Q ss_pred             EEEec-CCCcEEEEEeCCCcEEecCEEEEccCCc
Q 014997          200 NLEAG-SDGRVAAVKLEDGSTIDADTIVIGIGAK  232 (414)
Q Consensus       200 ~i~~~-~~~~~~~v~~~~g~~i~~D~vi~a~G~~  232 (414)
                      .+++. ..+....|++.+|-.+++..+|+++|.+
T Consensus       291 ~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr  324 (520)
T COG3634         291 KLEPAAVEGGLIEVELANGAVLKARTVILATGAR  324 (520)
T ss_pred             cceecCCCCccEEEEecCCceeccceEEEecCcc
Confidence            87653 2344568999999999999999999975

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.95  E-value=0.012  Score=61.29  Aligned_cols=53  Identities=21%  Similarity=0.208  Sum_probs=38.3

Q ss_pred             HHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEe---CCCc--EEecCEEEEccCCcC
Q 014997          181 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKP  233 (414)
Q Consensus       181 ~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~---~~g~--~i~~D~vi~a~G~~p  233 (414)
                      +.+..++.||+++.++.++++..++++++..+..   .+|+  .+.++.||+|||--.
T Consensus       149 L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~  206 (588)
T PRK08958        149 LYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAG  206 (588)
T ss_pred             HHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence            3344456788999999888887555677777654   3554  578999999999653

>TIGR00551 nadB L-aspartate oxidase

Probab=96.94  E-value=0.0087  Score=61.04  Aligned_cols=56  Identities=20%  Similarity=0.301  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHh-CCcEEEcCceEEEEEecCCCcEEEEEeCC-C--cEEecCEEEEccCCcC
Q 014997          177 LAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLED-G--STIDADTIVIGIGAKP  233 (414)
Q Consensus       177 ~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~~~v~~~~-g--~~i~~D~vi~a~G~~p  233 (414)
                      +...+.+.+++ .||+++.++.++++..+ ++.+..+...+ +  ..+.++.||+|+|-..
T Consensus       130 l~~~L~~~~~~~~gi~i~~~~~v~~l~~~-~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~  189 (488)
T TIGR00551       130 VITTLVKKALNHPNIRIIEGENALDLLIE-TGRVVGVWVWNRETVETCHADAVVLATGGAG  189 (488)
T ss_pred             HHHHHHHHHHhcCCcEEEECeEeeeeecc-CCEEEEEEEEECCcEEEEEcCEEEECCCccc
Confidence            33445555555 58999999999998754 55665554433 3  3689999999999754

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=96.91  E-value=0.01  Score=60.74  Aligned_cols=33  Identities=27%  Similarity=0.456  Sum_probs=30.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      .-.|+|||||.+|+-+|..|+++|.+|.++++.
T Consensus         6 ~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~   38 (508)
T PRK12266          6 TYDLLVIGGGINGAGIARDAAGRGLSVLLCEQD   38 (508)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence            357999999999999999999999999999986

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.91  E-value=0.011  Score=61.17  Aligned_cols=54  Identities=13%  Similarity=0.219  Sum_probs=38.2

Q ss_pred             HHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEe---CCCc--EEecCEEEEccCCcC
Q 014997          180 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKP  233 (414)
Q Consensus       180 ~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~---~~g~--~i~~D~vi~a~G~~p  233 (414)
                      .+.+.+++.||++++++.++++..++++++..+..   .+|+  .+.++.||+|+|-..
T Consensus       139 ~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~  197 (543)
T PRK06263        139 GLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAG  197 (543)
T ss_pred             HHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence            34445566789999999999987554444665543   4564  588999999999743

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=96.90  E-value=0.0079  Score=60.26  Aligned_cols=95  Identities=27%  Similarity=0.411  Sum_probs=63.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccc------------------------------------cC-H-
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------------------------------------FT-P-  175 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~------------------------------------~~-~-  175 (414)
                      -.++|||+|+.|.-.|..++++|.+|.++++...+-..+                                    ++ + 
T Consensus         5 yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id~~~   84 (454)
T COG1249           5 YDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKIDFEK   84 (454)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcCHHH
Confidence            468999999999999999999999999999884331000                                    00 0 


Q ss_pred             ----------HHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCC--CcEEecCEEEEccCCcCCC
Q 014997          176 ----------SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED--GSTIDADTIVIGIGAKPTV  235 (414)
Q Consensus       176 ----------~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~--g~~i~~D~vi~a~G~~p~~  235 (414)
                                .....+...+++.||+++.+.  -+|..  +.   .|...+  .+++.++.+|+|||.+|..
T Consensus        85 ~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~--a~f~~--~~---~v~V~~~~~~~~~a~~iiIATGS~p~~  149 (454)
T COG1249          85 LLARKDKVVRLLTGGVEGLLKKNGVDVIRGE--ARFVD--PH---TVEVTGEDKETITADNIIIATGSRPRI  149 (454)
T ss_pred             HHHHHHHHHHHHhhhHHHHHhhCCCEEEEEE--EEECC--CC---EEEEcCCCceEEEeCEEEEcCCCCCcC
Confidence                      011123344566688888764  33431  22   333333  4789999999999999974

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.90  E-value=0.012  Score=61.99  Aligned_cols=49  Identities=22%  Similarity=0.338  Sum_probs=37.0

Q ss_pred             HHHHhCCcEEEcCceEEEEEecCCCcEEEEEeC---CCc--EEecCEEEEccCCc
Q 014997          183 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGAK  232 (414)
Q Consensus       183 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~---~g~--~i~~D~vi~a~G~~  232 (414)
                      +.+++.||+++.++.+.++..+ ++++..|...   +|+  .+.++.||+|+|--
T Consensus       178 ~~~~~~gV~i~~~t~v~~Li~d-~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~  231 (640)
T PRK07573        178 RQIAAGTVKMYTRTEMLDLVVV-DGRARGIVARNLVTGEIERHTADAVVLATGGY  231 (640)
T ss_pred             HHHHhcCCEEEeceEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCEEEECCCCc
Confidence            3456778999999999988754 5677766653   453  58999999999974

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.89  E-value=0.011  Score=61.44  Aligned_cols=52  Identities=12%  Similarity=0.089  Sum_probs=37.5

Q ss_pred             HHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeC---CCc--EEecCEEEEccCCc
Q 014997          180 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGAK  232 (414)
Q Consensus       180 ~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~---~g~--~i~~D~vi~a~G~~  232 (414)
                      .+.+.+++.||+++.++.++++..+ +|++..+...   +|+  .+.++.||+|+|--
T Consensus       141 ~L~~~~~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~  197 (566)
T PRK06452        141 TLFERTSGLNVDFYNEWFSLDLVTD-NKKVVGIVAMQMKTLTPFFFKTKAVVLATGGM  197 (566)
T ss_pred             HHHHHHHhCCCEEEeCcEEEEEEEE-CCEEEEEEEEECCCCeEEEEEeCeEEECCCcc
Confidence            3444455678999999999988754 6777776543   332  57899999999953

>PTZ00052 thioredoxin reductase; Provisional

Probab=96.87  E-value=0.0032  Score=64.39  Aligned_cols=31  Identities=29%  Similarity=0.354  Sum_probs=29.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEee
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP  164 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~  164 (414)
                      -.++|||+|+.|+.+|..++++|.+|.++++
T Consensus         6 yDviVIG~GpaG~~AA~~aa~~G~~V~lie~   36 (499)
T PTZ00052          6 YDLVVIGGGSGGMAAAKEAAAHGKKVALFDY   36 (499)
T ss_pred             cCEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence            4799999999999999999999999999995

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=96.86  E-value=0.016  Score=60.70  Aligned_cols=32  Identities=28%  Similarity=0.584  Sum_probs=29.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhC--CCcEEEEeeC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPE  165 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~--g~~Vtlv~~~  165 (414)
                      -.|+|||+|..|+-+|..+++.  |.+|.++++.
T Consensus        12 ~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~   45 (608)
T PRK06854         12 TDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKA   45 (608)
T ss_pred             eCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECC
Confidence            3699999999999999999998  9999999875

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.84  E-value=0.0053  Score=61.92  Aligned_cols=82  Identities=22%  Similarity=0.278  Sum_probs=59.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEE
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  211 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~  211 (414)
                      .+++++|+|+|.+|+.+|..|++.|.+|+++++...       +.+.+. .+.+.+.|++++.+....+           
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~-------~~~~~~-~~~l~~~~~~~~~~~~~~~-----------   64 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEE-------DQLKEA-LEELGELGIELVLGEYPEE-----------   64 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch-------HHHHHH-HHHHHhcCCEEEeCCcchh-----------
Confidence            478999999999999999999999999999987541       122222 2345677888765443210           


Q ss_pred             EEeCCCcEEecCEEEEccCCcCCChhh
Q 014997          212 VKLEDGSTIDADTIVIGIGAKPTVSPF  238 (414)
Q Consensus       212 v~~~~g~~i~~D~vi~a~G~~p~~~~l  238 (414)
                            ..-.+|.||.++|..++.+.+
T Consensus        65 ------~~~~~d~vv~~~g~~~~~~~~   85 (450)
T PRK14106         65 ------FLEGVDLVVVSPGVPLDSPPV   85 (450)
T ss_pred             ------HhhcCCEEEECCCCCCCCHHH
Confidence                  012479999999998887754

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.83  E-value=0.016  Score=60.49  Aligned_cols=32  Identities=25%  Similarity=0.297  Sum_probs=29.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      -.|+|||+|..|+-+|..+++.|.+|+|+++.
T Consensus        13 ~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~   44 (591)
T PRK07057         13 FDVVIVGAGGSGMRASLQLARAGLSVAVLSKV   44 (591)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCcEEEEecc
Confidence            47999999999999999999999999999875

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.83  E-value=0.019  Score=56.77  Aligned_cols=34  Identities=29%  Similarity=0.415  Sum_probs=27.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhCC---CcEEEEeeCCc
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWK---LDTTIIFPENH  167 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g---~~Vtlv~~~~~  167 (414)
                      .+|+|||+|++|+.+|..|.+.-   ..|+++++.++
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~   38 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPN   38 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccc
Confidence            47999999999999999998752   22888887733

>PRK06175 L-aspartate oxidase; Provisional

Probab=96.82  E-value=0.014  Score=58.51  Aligned_cols=54  Identities=9%  Similarity=0.228  Sum_probs=37.7

Q ss_pred             HHHHHHHHHh-CCcEEEcCceEEEEEecCCCcEEEEE-eCCCc--EEecCEEEEccCCc
Q 014997          178 AQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVK-LEDGS--TIDADTIVIGIGAK  232 (414)
Q Consensus       178 ~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~~~v~-~~~g~--~i~~D~vi~a~G~~  232 (414)
                      ...+.+.+++ .||+++.++.+.++..+ ++++..+. ..++.  .+.++.||+|+|-.
T Consensus       131 ~~~L~~~~~~~~gV~i~~~t~v~~Li~~-~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~  188 (433)
T PRK06175        131 EKILLKKVKKRKNITIIENCYLVDIIEN-DNTCIGAICLKDNKQINIYSKVTILATGGI  188 (433)
T ss_pred             HHHHHHHHHhcCCCEEEECcEeeeeEec-CCEEEEEEEEECCcEEEEEcCeEEEccCcc
Confidence            3344445554 59999999999998654 45655543 33444  58999999999964

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.80  E-value=0.019  Score=59.86  Aligned_cols=54  Identities=17%  Similarity=0.262  Sum_probs=39.0

Q ss_pred             HHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEE---eCCCc--EEecCEEEEccCCcC
Q 014997          179 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK---LEDGS--TIDADTIVIGIGAKP  233 (414)
Q Consensus       179 ~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~---~~~g~--~i~~D~vi~a~G~~p  233 (414)
                      ..+.+.+++.||+++.++.+.++..+ ++++..+.   ..+|+  .+.++.||+|+|-..
T Consensus       139 ~~L~~~~~~~gi~i~~~t~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~  197 (575)
T PRK05945        139 HELVNNLRRYGVTIYDEWYVMRLILE-DNQAKGVVMYHIADGRLEVVRAKAVMFATGGYG  197 (575)
T ss_pred             HHHHHHHhhCCCEEEeCcEEEEEEEE-CCEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence            34555566778999999999998653 56655554   34554  589999999999753

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=96.80  E-value=0.018  Score=60.59  Aligned_cols=32  Identities=28%  Similarity=0.307  Sum_probs=29.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      -.|+|||+|..|+-+|..+++.|.+|.|+++.
T Consensus        51 ~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~   82 (635)
T PLN00128         51 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKL   82 (635)
T ss_pred             cCEEEECccHHHHHHHHHHHhcCCcEEEEEcC
Confidence            36999999999999999999999999999876

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=96.80  E-value=0.0037  Score=67.26  Aligned_cols=33  Identities=21%  Similarity=0.324  Sum_probs=30.4

Q ss_pred             eEEEECCChHHHHHHHHHHhC--CCcEEEEeeCCc
Q 014997          135 KVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENH  167 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~  167 (414)
                      +|+|||||+.|+-+|..|++.  |.+|+|+++.+.
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~   36 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP   36 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence            689999999999999999998  899999998864

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=96.78  E-value=0.013  Score=57.65  Aligned_cols=83  Identities=20%  Similarity=0.447  Sum_probs=56.5

Q ss_pred             HHHHHHHHHhC-CcEEEcCceEEEEEecCCCc-EEEEE-eC--CCcEEecCEEEEccCCcCCChhhhhcCCcc--cCCCE
Q 014997          178 AQRYEQLYQQN-GVKFVKGASIKNLEAGSDGR-VAAVK-LE--DGSTIDADTIVIGIGAKPTVSPFERVGLNS--SVGGI  250 (414)
Q Consensus       178 ~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~-~~~v~-~~--~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~--~~g~i  250 (414)
                      .+.+.+.+++. |++++++++|+.+++.+++. ...+. +.  +..++.++.|+++.|-..- .+|.++|++.  .-|+.
T Consensus       184 Tr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL-~LLqksgi~e~~gyggf  262 (488)
T PF06039_consen  184 TRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGAL-PLLQKSGIPEGKGYGGF  262 (488)
T ss_pred             HHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhH-HHHHHcCChhhcccCCC
Confidence            34444555666 99999999999999887873 22221 22  3357999999999998763 6888888863  23455


Q ss_pred             EEc-CCCCCCCC
Q 014997          251 QVD-GQFRTRMP  261 (414)
Q Consensus       251 ~vd-~~~~t~~~  261 (414)
                      .|. .++++..|
T Consensus       263 PVsG~fl~~~n~  274 (488)
T PF06039_consen  263 PVSGQFLRCKNP  274 (488)
T ss_pred             cccceEEecCCH
Confidence            554 46666544

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=96.78  E-value=0.014  Score=57.15  Aligned_cols=92  Identities=20%  Similarity=0.299  Sum_probs=66.0

Q ss_pred             HHhCCCcEEEEee-CCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccC
Q 014997          152 AVGWKLDTTIIFP-ENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG  230 (414)
Q Consensus       152 l~~~g~~Vtlv~~-~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G  230 (414)
                      .+..|+...++.- .+++-. -.-+.+.+.+.+.+++.|++++++++|..+... ++.+..+.+.+|.++++|.||+|+|
T Consensus       150 ~~aa~a~~eil~~~~rHiGT-D~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~-~~~~~~v~~~~g~~i~~~~vvlA~G  227 (486)
T COG2509         150 FRAAGAGEEILPIYQRHIGT-DILPKVVKNIREYLESLGGEIRFNTEVEDIEIE-DNEVLGVKLTKGEEIEADYVVLAPG  227 (486)
T ss_pred             HHHhCCCceeeeccccccCc-cchHHHHHHHHHHHHhcCcEEEeeeEEEEEEec-CCceEEEEccCCcEEecCEEEEccC
Confidence            3444555544432 233333 234577778889999999999999999999864 4556788999999999999999999


Q ss_pred             CcCCChhh----hhcCCccc
Q 014997          231 AKPTVSPF----ERVGLNSS  246 (414)
Q Consensus       231 ~~p~~~~l----~~~gl~~~  246 (414)
                      .... +|+    ++.|+...
T Consensus       228 rsg~-dw~~~l~~K~Gv~~~  246 (486)
T COG2509         228 RSGR-DWFEMLHKKLGVKMR  246 (486)
T ss_pred             cchH-HHHHHHHHhcCcccc
Confidence            9876 554    34455443

>TIGR03452 mycothione_red mycothione reductase

Probab=96.78  E-value=0.0051  Score=62.07  Aligned_cols=29  Identities=10%  Similarity=0.013  Sum_probs=24.6

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      .++|||+|+.|..+|.  +..|.+|.++++.
T Consensus         4 D~vvIG~G~~g~~aa~--~~~g~~V~lie~~   32 (452)
T TIGR03452         4 DLIIIGTGSGNSIPDP--RFADKRIAIVEKG   32 (452)
T ss_pred             CEEEECCCHHHHHHHH--HHCCCeEEEEeCC
Confidence            6899999999988754  4579999999975

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=96.70  E-value=0.017  Score=60.24  Aligned_cols=58  Identities=19%  Similarity=0.312  Sum_probs=40.5

Q ss_pred             HHHHhCCcEEEcCceEEEEEecCCCcEEEEEeC-CCc--EEecC-EEEEccC-CcCCChhhhh
Q 014997          183 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGS--TIDAD-TIVIGIG-AKPTVSPFER  240 (414)
Q Consensus       183 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~-~g~--~i~~D-~vi~a~G-~~p~~~~l~~  240 (414)
                      +..++.|++|++++.++++..+++|++..|... +|+  .+.+. .||+|+| +..|.+++++
T Consensus       221 ~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~N~em~~~  283 (584)
T PRK12835        221 LALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFDHDMDWRKE  283 (584)
T ss_pred             HHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCcccCCHHHHHH
Confidence            344567899999999999987667888776553 343  47787 5888877 4555555544

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.68  E-value=0.023  Score=59.77  Aligned_cols=32  Identities=28%  Similarity=0.400  Sum_probs=29.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      -.|+|||+|..|+-+|..+++.|.+|+++++.
T Consensus         9 ~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~   40 (626)
T PRK07803          9 YDVVVIGAGGAGLRAAIEARERGLRVAVVCKS   40 (626)
T ss_pred             ecEEEECcCHHHHHHHHHHHHCCCCEEEEecc
Confidence            36999999999999999999999999999875

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=96.66  E-value=0.0065  Score=58.70  Aligned_cols=34  Identities=32%  Similarity=0.525  Sum_probs=31.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      ..+|+|||||..|+-+|..|.++|.+|.|++.+.
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e   35 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESRE   35 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecc
Confidence            3579999999999999999999999999999763

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.65  E-value=0.032  Score=58.26  Aligned_cols=56  Identities=21%  Similarity=0.240  Sum_probs=40.7

Q ss_pred             HHHHHHHHHhCCcEEEcCceEEEEEecCC---CcEEEEEe---CCCc--EEecCEEEEccCCcC
Q 014997          178 AQRYEQLYQQNGVKFVKGASIKNLEAGSD---GRVAAVKL---EDGS--TIDADTIVIGIGAKP  233 (414)
Q Consensus       178 ~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~~~~~v~~---~~g~--~i~~D~vi~a~G~~p  233 (414)
                      ...+.+.+++.||+++.++.++++..+++   +++..+..   .+|+  .+.++.||+|+|-..
T Consensus       143 ~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  206 (583)
T PRK08205        143 LQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG  206 (583)
T ss_pred             HHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence            34455556778999999999999875432   67666653   4554  588999999999754

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=96.60  E-value=0.044  Score=55.68  Aligned_cols=62  Identities=21%  Similarity=0.302  Sum_probs=42.4

Q ss_pred             HHHHHH-hCCcEEEcCceEEEEEecCCCcEEEEE---eCCCc--EEecCEEEEccCCcCCChhhhhcCCc
Q 014997          181 YEQLYQ-QNGVKFVKGASIKNLEAGSDGRVAAVK---LEDGS--TIDADTIVIGIGAKPTVSPFERVGLN  244 (414)
Q Consensus       181 ~~~~l~-~~gv~i~~~~~v~~i~~~~~~~~~~v~---~~~g~--~i~~D~vi~a~G~~p~~~~l~~~gl~  244 (414)
                      +.+.+. ..|+++++++.|..++..+++.. .+.   ..+++  ++.+|.||+|.|.... .+++.+|+.
T Consensus       190 L~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w-~v~v~~t~~g~~~~i~Ad~VV~AAGawS~-~La~~~Gi~  257 (497)
T PRK13339        190 LAKHLESHPNAQVKYNHEVVDLERLSDGGW-EVTVKDRNTGEKREQVADYVFIGAGGGAI-PLLQKSGIP  257 (497)
T ss_pred             HHHHHHhCCCcEEEeCCEEEEEEECCCCCE-EEEEEecCCCceEEEEcCEEEECCCcchH-HHHHHcCCC
Confidence            333444 35899999999999976534332 232   34442  6899999999998774 667777664

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.54  E-value=0.032  Score=58.18  Aligned_cols=31  Identities=32%  Similarity=0.532  Sum_probs=28.5

Q ss_pred             eEEEECCChHHHHHHHHHHhCC---CcEEEEeeC
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWK---LDTTIIFPE  165 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g---~~Vtlv~~~  165 (414)
                      .|+|||+|..|+-+|..+++.|   .+|+|+++.
T Consensus         7 DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~   40 (577)
T PRK06069          7 DVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKT   40 (577)
T ss_pred             CEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcc
Confidence            6999999999999999999998   799999865

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=96.52  E-value=0.0035  Score=61.83  Aligned_cols=35  Identities=23%  Similarity=0.173  Sum_probs=32.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  168 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  168 (414)
                      ++|+|||||..|+++|..|+++|.+|+++++.+..
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~   37 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK   37 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence            57999999999999999999999999999976554

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.49  E-value=0.029  Score=58.55  Aligned_cols=32  Identities=28%  Similarity=0.390  Sum_probs=29.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      ..|+|||+|..|+-+|..+++.|.+|+|+++.
T Consensus         4 ~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~   35 (589)
T PRK08641          4 GKVIVVGGGLAGLMATIKAAEAGVHVDLFSLV   35 (589)
T ss_pred             ccEEEECchHHHHHHHHHHHHcCCcEEEEEcc
Confidence            36999999999999999999999999999854

>PRK07395 L-aspartate oxidase; Provisional

Probab=96.49  E-value=0.018  Score=59.64  Aligned_cols=31  Identities=29%  Similarity=0.344  Sum_probs=27.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      -.|+|||+|..|+-+|..+. .|.+|.|+++.
T Consensus        10 ~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~   40 (553)
T PRK07395         10 FDVLVVGSGAAGLYAALCLP-SHLRVGLITKD   40 (553)
T ss_pred             CCEEEECccHHHHHHHHHhh-cCCCEEEEEcc
Confidence            47999999999999999986 48999999876

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=96.43  E-value=0.0082  Score=55.21  Aligned_cols=34  Identities=41%  Similarity=0.564  Sum_probs=29.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCC------CcEEEEeeC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWK------LDTTIIFPE  165 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g------~~Vtlv~~~  165 (414)
                      ..++|+|+|||.+|+-+|.+|.+.+      ..||+++..
T Consensus         9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~   48 (380)
T KOG2852|consen    9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESK   48 (380)
T ss_pred             CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeec
Confidence            3489999999999999999999886      678998865

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.41  E-value=0.008  Score=53.70  Aligned_cols=79  Identities=16%  Similarity=0.212  Sum_probs=53.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEE
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  211 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~  211 (414)
                      .+++++|||||.+|..-+..|.+.|.+|+++.+..       .++    +.+..++.+|+++.+.    +          
T Consensus         8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~-------~~~----l~~l~~~~~i~~~~~~----~----------   62 (205)
T TIGR01470         8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL-------ESE----LTLLAEQGGITWLARC----F----------   62 (205)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC-------CHH----HHHHHHcCCEEEEeCC----C----------
Confidence            57899999999999999999999999999997542       222    2333333345554321    0          


Q ss_pred             EEeCCCcEEecCEEEEccCCc-CCChhh
Q 014997          212 VKLEDGSTIDADTIVIGIGAK-PTVSPF  238 (414)
Q Consensus       212 v~~~~g~~i~~D~vi~a~G~~-p~~~~l  238 (414)
                         ..+..-.+++||.|||.. .|..+.
T Consensus        63 ---~~~dl~~~~lVi~at~d~~ln~~i~   87 (205)
T TIGR01470        63 ---DADILEGAFLVIAATDDEELNRRVA   87 (205)
T ss_pred             ---CHHHhCCcEEEEECCCCHHHHHHHH
Confidence               011122489999999986 554443

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=96.41  E-value=0.041  Score=57.35  Aligned_cols=59  Identities=20%  Similarity=0.318  Sum_probs=40.9

Q ss_pred             HHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCC-Cc--EEec-CEEEEccCCcC-CChhhhh
Q 014997          181 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED-GS--TIDA-DTIVIGIGAKP-TVSPFER  240 (414)
Q Consensus       181 ~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~-g~--~i~~-D~vi~a~G~~p-~~~~l~~  240 (414)
                      +.+.+++.|++++.++.+.++..+ ++++..|...+ |+  .+.+ +.||+|+|--. |.+++++
T Consensus       227 L~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~em~~~  290 (578)
T PRK12843        227 LLYSLRARGVRILTQTDVESLETD-HGRVIGATVVQGGVRRRIRARGGVVLATGGFNRHPQLRRE  290 (578)
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEee-CCEEEEEEEecCCeEEEEEccceEEECCCCcccCHHHHHH
Confidence            445567789999999999998754 67777776543 33  4776 68999998654 4344443

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=96.40  E-value=0.037  Score=58.21  Aligned_cols=32  Identities=25%  Similarity=0.265  Sum_probs=29.7

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      -.++|||+|+.|..+|..++++|.+|.+|++.
T Consensus       117 yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~  148 (659)
T PTZ00153        117 YDVGIIGCGVGGHAAAINAMERGLKVIIFTGD  148 (659)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            37999999999999999999999999999853

>PRK08071 L-aspartate oxidase; Provisional

Probab=96.39  E-value=0.025  Score=58.02  Aligned_cols=31  Identities=23%  Similarity=0.432  Sum_probs=27.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      ..|+|||+|..|+-+|..+++ |.+|+++++.
T Consensus         4 ~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~   34 (510)
T PRK08071          4 ADVIIIGSGIAALTVAKELCH-EYNVIIITKK   34 (510)
T ss_pred             cCEEEECccHHHHHHHHHhhc-CCCEEEEecc
Confidence            479999999999999999876 8899998875

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=96.34  E-value=0.033  Score=56.42  Aligned_cols=34  Identities=29%  Similarity=0.508  Sum_probs=31.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      ..-.|+|||||.+|+-+|..++.+|.+|.+++++
T Consensus        11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~   44 (532)
T COG0578          11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKG   44 (532)
T ss_pred             cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecC
Confidence            3457999999999999999999999999999987

>PLN02815 L-aspartate oxidase

Probab=96.32  E-value=0.033  Score=58.11  Aligned_cols=31  Identities=23%  Similarity=0.415  Sum_probs=28.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      -.|+|||+|..|+-+|..+++.| +|.|+++.
T Consensus        30 ~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~   60 (594)
T PLN02815         30 FDFLVIGSGIAGLRYALEVAEYG-TVAIITKD   60 (594)
T ss_pred             cCEEEECccHHHHHHHHHHhhCC-CEEEEECC
Confidence            47999999999999999999999 89998875

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=96.28  E-value=0.057  Score=57.08  Aligned_cols=32  Identities=34%  Similarity=0.495  Sum_probs=29.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      -.|+|||+|..|+-+|..+++.|.+|.++++.
T Consensus         6 ~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~   37 (657)
T PRK08626          6 TDALVIGAGLAGLRVAIAAAQRGLDTIVLSLV   37 (657)
T ss_pred             ccEEEECccHHHHHHHHHHHHcCCCEEEEeCC
Confidence            36999999999999999999999999999854

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=96.22  E-value=0.0076  Score=54.65  Aligned_cols=91  Identities=19%  Similarity=0.294  Sum_probs=57.3

Q ss_pred             eEEEECCChHHHHHHHHHHhC--CCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEE------------cCceEEE
Q 014997          135 KVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV------------KGASIKN  200 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~------------~~~~v~~  200 (414)
                      +.+|||||..|+.||..|+.+  ..+|.++..++-+-+ .   .--..+.+++++..|+=.            .+. |..
T Consensus         1 kfivvgggiagvscaeqla~~~psa~illitass~vks-v---tn~~~i~~ylekfdv~eq~~~elg~~f~~~~~~-v~~   75 (334)
T KOG2755|consen    1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKS-V---TNYQKIGQYLEKFDVKEQNCHELGPDFRRFLND-VVT   75 (334)
T ss_pred             CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHH-H---hhHHHHHHHHHhcCccccchhhhcccHHHHHHh-hhh
Confidence            368999999999999999876  457777776542211 0   111123334444333211            011 233


Q ss_pred             EEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997          201 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       201 i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (414)
                      +..    ....+++.+|.++.++.+++|+|++|.
T Consensus        76 ~~s----~ehci~t~~g~~~ky~kKOG~tg~kPk  105 (334)
T KOG2755|consen   76 WDS----SEHCIHTQNGEKLKYFKLCLCTGYKPK  105 (334)
T ss_pred             hcc----ccceEEecCCceeeEEEEEEecCCCcc
Confidence            321    112688999999999999999999996

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=96.18  E-value=0.061  Score=56.14  Aligned_cols=54  Identities=30%  Similarity=0.426  Sum_probs=39.2

Q ss_pred             HHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEe--CCCc-EEec-CEEEEccCCcCC
Q 014997          180 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL--EDGS-TIDA-DTIVIGIGAKPT  234 (414)
Q Consensus       180 ~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~--~~g~-~i~~-D~vi~a~G~~p~  234 (414)
                      .+.+.+++.|++++.++.++++..+ ++++..|..  .++. .+.+ +.||+|+|.-.+
T Consensus       222 ~L~~~a~~~Gv~i~~~t~v~~l~~~-~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~  279 (581)
T PRK06134        222 RLLKSAEDLGVRIWESAPARELLRE-DGRVAGAVVETPGGLQEIRARKGVVLAAGGFPH  279 (581)
T ss_pred             HHHHHHHhCCCEEEcCCEEEEEEEe-CCEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence            3445567789999999999998754 566665544  3333 5788 999999987654

>PRK07512 L-aspartate oxidase; Provisional

Probab=96.17  E-value=0.035  Score=56.96  Aligned_cols=52  Identities=23%  Similarity=0.375  Sum_probs=34.9

Q ss_pred             HHHHHHHhC-CcEEEcCceEEEEEecCCCcEEEEEeC-CCc--EEecCEEEEccCCc
Q 014997          180 RYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLE-DGS--TIDADTIVIGIGAK  232 (414)
Q Consensus       180 ~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~~~v~~~-~g~--~i~~D~vi~a~G~~  232 (414)
                      .+.+.+++. ||+++.++.++++..+ ++++..+... ++.  .+.++.||+|+|--
T Consensus       141 ~L~~~~~~~~gV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~  196 (513)
T PRK07512        141 ALIAAVRATPSITVLEGAEARRLLVD-DGAVAGVLAATAGGPVVLPARAVVLATGGI  196 (513)
T ss_pred             HHHHHHHhCCCCEEEECcChhheeec-CCEEEEEEEEeCCeEEEEECCEEEEcCCCC
Confidence            344444443 7888888888887643 5666665543 232  58999999999974

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=96.17  E-value=0.056  Score=51.77  Aligned_cols=90  Identities=16%  Similarity=0.251  Sum_probs=63.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhC--CCcEEEEeeCCcccccc---------cCHHHHHHHHHHHHhCCcEEEcCceE-EE
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQRL---------FTPSLAQRYEQLYQQNGVKFVKGASI-KN  200 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~l~~~---------~~~~~~~~~~~~l~~~gv~i~~~~~v-~~  200 (414)
                      ..+|.|||+|+.|+-.|..|.++  +.+|+++++.+.++.-.         .-+.+-+.+.+.++.....+..|.+| +.
T Consensus        20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVAPDHpEvKnvintFt~~aE~~rfsf~gNv~vG~d   99 (468)
T KOG1800|consen   20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTAEHERFSFFGNVKVGRD   99 (468)
T ss_pred             CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccCCCCcchhhHHHHHHHHhhccceEEEecceeccc
Confidence            34999999999999999998874  58999999988664310         11234455777777778888877655 21


Q ss_pred             EEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997          201 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       201 i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (414)
                      +           .+.+ -+-.+|.|++|.|...+
T Consensus       100 v-----------sl~e-L~~~ydavvLaYGa~~d  121 (468)
T KOG1800|consen  100 V-----------SLKE-LTDNYDAVVLAYGADGD  121 (468)
T ss_pred             c-----------cHHH-HhhcccEEEEEecCCCC
Confidence            1           2211 12358999999998755

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=96.16  E-value=0.041  Score=51.50  Aligned_cols=50  Identities=24%  Similarity=0.407  Sum_probs=37.0

Q ss_pred             cEEEcCceEEEEEecCCCcEEEEEeCC--C--cEEecCEEEEccCCcCC--Chhhhh
Q 014997          190 VKFVKGASIKNLEAGSDGRVAAVKLED--G--STIDADTIVIGIGAKPT--VSPFER  240 (414)
Q Consensus       190 v~i~~~~~v~~i~~~~~~~~~~v~~~~--g--~~i~~D~vi~a~G~~p~--~~~l~~  240 (414)
                      +++.++++|..|.+ .+|++..|+.-|  |  ..+.+|.||+|+|--..  .++|++
T Consensus       160 ~ki~~nskvv~il~-n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~ysd~~lLKe  215 (477)
T KOG2404|consen  160 VKILLNSKVVDILR-NNGKVSGVEYMDASGEKSKIIGDAVVLATGGFGYSDKELLKE  215 (477)
T ss_pred             Hhhhhcceeeeeec-CCCeEEEEEEEcCCCCccceecCceEEecCCcCcChHHHHHH
Confidence            78899999999984 578887777633  3  35889999999986543  345554

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=96.13  E-value=0.1  Score=54.59  Aligned_cols=31  Identities=29%  Similarity=0.390  Sum_probs=27.5

Q ss_pred             eEEEECCChHHHHHHHHHH----hCCCcEEEEeeC
Q 014997          135 KVVVVGGGYIGMEVAAAAV----GWKLDTTIIFPE  165 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~----~~g~~Vtlv~~~  165 (414)
                      .|+|||+|..|+-+|..++    +.|.+|+|+++.
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~   35 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKA   35 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEcc
Confidence            3899999999999999998    678999999875

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=96.12  E-value=0.011  Score=61.49  Aligned_cols=103  Identities=20%  Similarity=0.297  Sum_probs=76.7

Q ss_pred             cCCCeEEEECCCh--HHHHHHHHHHhCCCcEEEEeeCCcccccc-------------cCHHHHHHHHHHHHhCCcEEEcC
Q 014997          131 EKAKKVVVVGGGY--IGMEVAAAAVGWKLDTTIIFPENHLLQRL-------------FTPSLAQRYEQLYQQNGVKFVKG  195 (414)
Q Consensus       131 ~~~~~vvVvGgG~--~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~-------------~~~~~~~~~~~~l~~~gv~i~~~  195 (414)
                      ...+++.|+|+|.  ++.+++..+...+.+++++.+..+++...             .+..+...+.+.+++.|++++.+
T Consensus       155 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~~Gv~i~~~  234 (574)
T PRK12842        155 PPLKTITFIGMMFNSSNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALDLGIPILTG  234 (574)
T ss_pred             CCcccccccceecccchHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHhCCCEEEeC
Confidence            3567888999998  89999999999998888776655554321             11345666777788999999999


Q ss_pred             ceEEEEEecCCCcEEEEEeCC--Cc-EEecC-EEEEccCCcCC
Q 014997          196 ASIKNLEAGSDGRVAAVKLED--GS-TIDAD-TIVIGIGAKPT  234 (414)
Q Consensus       196 ~~v~~i~~~~~~~~~~v~~~~--g~-~i~~D-~vi~a~G~~p~  234 (414)
                      +.++++..+ ++++..|...+  ++ .+.++ .||+|+|..++
T Consensus       235 ~~v~~l~~~-~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~  276 (574)
T PRK12842        235 TPARELLTE-GGRVVGARVIDAGGERRITARRGVVLACGGFSH  276 (574)
T ss_pred             CEEEEEEee-CCEEEEEEEEcCCceEEEEeCCEEEEcCCCccc
Confidence            999999754 56776665533  33 47786 79999997764

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=96.11  E-value=0.037  Score=53.53  Aligned_cols=104  Identities=19%  Similarity=0.302  Sum_probs=75.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhC------CCcEEEEeeCCcc------------------ccc----------------
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGW------KLDTTIIFPENHL------------------LQR----------------  171 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~------g~~Vtlv~~~~~~------------------l~~----------------  171 (414)
                      ..-.|+|||+|+.|+..|..|.++      ..+|.+++....+                  ++.                
T Consensus        75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~vT~d~  154 (621)
T KOG2415|consen   75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTPVTSDK  154 (621)
T ss_pred             ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCcccccccccc
Confidence            345799999999999999988754      3456777765211                  000                


Q ss_pred             ----------------ccC---------HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCC----------
Q 014997          172 ----------------LFT---------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED----------  216 (414)
Q Consensus       172 ----------------~~~---------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~----------  216 (414)
                                      .++         ..+..++-+..++.||+++++....++--+++|.+..|-++|          
T Consensus       155 ~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pK  234 (621)
T KOG2415|consen  155 FKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPK  234 (621)
T ss_pred             eeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCcc
Confidence                            000         124567777789999999999999999888899888887654          


Q ss_pred             -----CcEEecCEEEEccCCcCCC
Q 014997          217 -----GSTIDADTIVIGIGAKPTV  235 (414)
Q Consensus       217 -----g~~i~~D~vi~a~G~~p~~  235 (414)
                           |-++.+..-|+|-|.+...
T Consensus       235 d~FerGme~hak~TifAEGc~G~L  258 (621)
T KOG2415|consen  235 DTFERGMEFHAKVTIFAEGCHGSL  258 (621)
T ss_pred             ccccccceecceeEEEeccccchh
Confidence                 3368888999999988754

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=96.10  E-value=0.072  Score=55.56  Aligned_cols=31  Identities=26%  Similarity=0.392  Sum_probs=27.6

Q ss_pred             eEEEECCChHHHHHHHHHHhC--CCcEEEEeeC
Q 014997          135 KVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPE  165 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~--g~~Vtlv~~~  165 (414)
                      .|+|||+|..|+-+|..+++.  |.+|+|+++.
T Consensus         6 DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~   38 (582)
T PRK09231          6 DLAIIGAGGAGLRAAIAAAEANPNLKIALISKV   38 (582)
T ss_pred             eEEEECccHHHHHHHHHHHHhCCCCcEEEEEcc
Confidence            699999999999999999876  4789999876

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=96.09  E-value=0.0052  Score=59.24  Aligned_cols=48  Identities=29%  Similarity=0.356  Sum_probs=41.6

Q ss_pred             CHhHHHHcCCeEEcCCcEEEEeCCC--CEEEeCCCcEEecCeEEEccCCC
Q 014997           52 TPEWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCT   99 (414)
Q Consensus        52 ~~~~~~~~~i~~~~~~~V~~id~~~--~~V~~~~g~~~~yd~LviAtG~~   99 (414)
                      ....+++.||+++++++|.+++.++  ..|.+.+|+++.+|.||||||..
T Consensus       117 ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtGG~  166 (408)
T COG2081         117 LLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATGGK  166 (408)
T ss_pred             HHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecCCc
Confidence            3455678899999999999999885  68889999889999999999954

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=96.03  E-value=0.086  Score=54.93  Aligned_cols=31  Identities=32%  Similarity=0.458  Sum_probs=27.6

Q ss_pred             eEEEECCChHHHHHHHHHHhC--CCcEEEEeeC
Q 014997          135 KVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPE  165 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~--g~~Vtlv~~~  165 (414)
                      .|+|||+|..|+-+|..+++.  |.+|+|+++.
T Consensus         5 DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~   37 (580)
T TIGR01176         5 DIAVIGAGGAGLRAAIAAAEANPHLDVALISKV   37 (580)
T ss_pred             eEEEECccHHHHHHHHHHHHhCCCCcEEEEEcc
Confidence            699999999999999999876  5799999876

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=95.92  E-value=0.048  Score=51.66  Aligned_cols=33  Identities=24%  Similarity=0.367  Sum_probs=28.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      +..+|+|||+|.+|+.+|..|+++ .+||+++..
T Consensus         7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~   39 (447)
T COG2907           7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEAD   39 (447)
T ss_pred             CCcceEEEcccchhhhhHHhhhcc-cceEEEecc
Confidence            457899999999999999999876 688888765

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=95.88  E-value=0.029  Score=50.04  Aligned_cols=33  Identities=30%  Similarity=0.510  Sum_probs=30.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEee
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP  164 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~  164 (414)
                      .+++++|||||.+|...|..|.+.|.+|+++.+
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~   41 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISP   41 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence            679999999999999999999999999999964

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.88  E-value=0.012  Score=59.88  Aligned_cols=39  Identities=26%  Similarity=0.459  Sum_probs=35.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ  170 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  170 (414)
                      +.++|+|||+|.+|+-+|..|.+.|.+|+|++.++++-.
T Consensus        14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG   52 (501)
T KOG0029|consen   14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG   52 (501)
T ss_pred             CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCc
Confidence            457999999999999999999999999999999877643

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=95.87  E-value=0.004  Score=57.98  Aligned_cols=103  Identities=24%  Similarity=0.324  Sum_probs=62.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhC-C-CcEEEEeeCCc-ccccc---cCHHHHHHHHHH------HHhCCcEEEcCceEE
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGW-K-LDTTIIFPENH-LLQRL---FTPSLAQRYEQL------YQQNGVKFVKGASIK  199 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~-g-~~Vtlv~~~~~-~l~~~---~~~~~~~~~~~~------l~~~gv~i~~~~~v~  199 (414)
                      +.-+|+|||||.-|+-+|..+.++ + -+|-++++.+. .....   .+..+.. +.+.      +--.|...+. ..|+
T Consensus        38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~-l~~srr~~a~liP~~a~wi~-ekv~  115 (446)
T KOG3851|consen   38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKS-LDSSRRKQASLIPKGATWIK-EKVK  115 (446)
T ss_pred             cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhh-hhhccCcccccccCCcHHHH-HHHH
Confidence            456899999999999999988764 3 35777776542 11111   1111111 1110      0001111111 3456


Q ss_pred             EEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhh
Q 014997          200 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER  240 (414)
Q Consensus       200 ~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~  240 (414)
                      +++++.+    .|.+.+|++|.+|.+|+|.|..-+.+.++.
T Consensus       116 ~f~P~~N----~v~t~gg~eIsYdylviA~Giql~y~~IkG  152 (446)
T KOG3851|consen  116 EFNPDKN----TVVTRGGEEISYDYLVIAMGIQLDYGKIKG  152 (446)
T ss_pred             hcCCCcC----eEEccCCcEEeeeeEeeeeeceeccchhcC
Confidence            6665432    688999999999999999999877665443

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=95.84  E-value=0.089  Score=59.36  Aligned_cols=32  Identities=31%  Similarity=0.488  Sum_probs=29.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      -.|+|||+|..|+-+|..+++.|.+|.++++.
T Consensus       410 ~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~  441 (1167)
T PTZ00306        410 ARVIVVGGGLAGCSAAIEAASCGAQVILLEKE  441 (1167)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEEcc
Confidence            36999999999999999999999999999976

>PRK12839 hypothetical protein; Provisional

Probab=95.77  E-value=0.11  Score=54.07  Aligned_cols=59  Identities=24%  Similarity=0.339  Sum_probs=40.2

Q ss_pred             HHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEe--CCCc-E-EecCEEEEccCCc-CCChhhh
Q 014997          181 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL--EDGS-T-IDADTIVIGIGAK-PTVSPFE  239 (414)
Q Consensus       181 ~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~--~~g~-~-i~~D~vi~a~G~~-p~~~~l~  239 (414)
                      +.+..++.|++++.++.++++..++++++..|..  .+|+ . ..++.||+|+|-- -|.++++
T Consensus       220 L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~n~~~~~  283 (572)
T PRK12839        220 LLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPNDVDRRK  283 (572)
T ss_pred             HHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCcccCHHHHH
Confidence            4455577899999999999987555677777754  3443 2 3458999999754 3444433

>PRK09077 L-aspartate oxidase; Provisional

Probab=95.77  E-value=0.15  Score=52.78  Aligned_cols=31  Identities=16%  Similarity=0.311  Sum_probs=27.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      -.|+|||+|..|+-+|..+++. .+|+++++.
T Consensus         9 ~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~   39 (536)
T PRK09077          9 CDVLIIGSGAAGLSLALRLAEH-RRVAVLSKG   39 (536)
T ss_pred             CCEEEECchHHHHHHHHHHHHC-CCEEEEecc
Confidence            3699999999999999999876 789998876

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=95.66  E-value=0.023  Score=47.87  Aligned_cols=84  Identities=14%  Similarity=0.235  Sum_probs=55.2

Q ss_pred             EEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeC
Q 014997          136 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE  215 (414)
Q Consensus       136 vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~  215 (414)
                      |+|+|+|.+|+-+|..|.+.|.+|+++.|.+ ..             +.+++.|+.+.....-..+..       .....
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~-------------~~~~~~g~~~~~~~~~~~~~~-------~~~~~   59 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RL-------------EAIKEQGLTITGPDGDETVQP-------PIVIS   59 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HH-------------HHHHHHCEEEEETTEEEEEEE-------EEEES
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cH-------------HhhhheeEEEEecccceeccc-------ccccC
Confidence            6899999999999999999999999998754 11             236777888877652111211       11222


Q ss_pred             CC--cEEecCEEEEccCCcCCChhhhh
Q 014997          216 DG--STIDADTIVIGIGAKPTVSPFER  240 (414)
Q Consensus       216 ~g--~~i~~D~vi~a~G~~p~~~~l~~  240 (414)
                      ..  ..-++|.||+|+-.....+.++.
T Consensus        60 ~~~~~~~~~D~viv~vKa~~~~~~l~~   86 (151)
T PF02558_consen   60 APSADAGPYDLVIVAVKAYQLEQALQS   86 (151)
T ss_dssp             SHGHHHSTESEEEE-SSGGGHHHHHHH
T ss_pred             cchhccCCCcEEEEEecccchHHHHHH
Confidence            21  23468999999876555444443

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.65  E-value=0.052  Score=54.88  Aligned_cols=83  Identities=20%  Similarity=0.135  Sum_probs=58.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEE
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  211 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~  211 (414)
                      .+++|.|+|.|.+|+-+|..|.++|.+|++.++.+...   .+     ...+.+++.|+.+..+..-.       .   .
T Consensus        13 ~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~---~~-----~~~~~l~~~gi~~~~~~~~~-------~---~   74 (458)
T PRK01710         13 KNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEE---LG-----EVSNELKELGVKLVLGENYL-------D---K   74 (458)
T ss_pred             cCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCcc---ch-----HHHHHHHhCCCEEEeCCCCh-------H---H
Confidence            36899999999999999999999999999988765211   01     11133677788887542100       0   0


Q ss_pred             EEeCCCcEEecCEEEEccCCcCCChhhh
Q 014997          212 VKLEDGSTIDADTIVIGIGAKPTVSPFE  239 (414)
Q Consensus       212 v~~~~g~~i~~D~vi~a~G~~p~~~~l~  239 (414)
                             .-++|+||+++|..|..+.+.
T Consensus        75 -------~~~~dlVV~Spgi~~~~p~~~   95 (458)
T PRK01710         75 -------LDGFDVIFKTPSMRIDSPELV   95 (458)
T ss_pred             -------hccCCEEEECCCCCCCchHHH
Confidence                   124799999999998766553

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=95.64  E-value=0.02  Score=59.43  Aligned_cols=107  Identities=20%  Similarity=0.213  Sum_probs=75.9

Q ss_pred             CCCeEEEECCChHHHHHHHH-------HHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEec
Q 014997          132 KAKKVVVVGGGYIGMEVAAA-------AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG  204 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~-------l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~  204 (414)
                      .++.++++|++.++++.+..       +.+++.+|++.......+. .++..+...+.+.+++.|+++++++.++++..+
T Consensus       159 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~  237 (557)
T PRK07843        159 VPLNMVVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNLL-GMGQALAAGLRIGLQRAGVPVLLNTPLTDLYVE  237 (557)
T ss_pred             ccccccccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCcc-cCcHHHHHHHHHHHHcCCCEEEeCCEEEEEEEe
Confidence            35678899999999998864       5566777777655443332 356677778888889999999999999999864


Q ss_pred             CCCcEEEEEeC-CCc--EEecC-EEEEccC-CcCCChhhhh
Q 014997          205 SDGRVAAVKLE-DGS--TIDAD-TIVIGIG-AKPTVSPFER  240 (414)
Q Consensus       205 ~~~~~~~v~~~-~g~--~i~~D-~vi~a~G-~~p~~~~l~~  240 (414)
                       ++++..|... +++  .+.++ .||+|+| +.+|.++++.
T Consensus       238 -~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~~~  277 (557)
T PRK07843        238 -DGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMRAK  277 (557)
T ss_pred             -CCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHHHH
Confidence             5667666553 443  47785 5888655 6666555544

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.61  E-value=0.037  Score=56.00  Aligned_cols=85  Identities=18%  Similarity=0.185  Sum_probs=58.2

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEe
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL  214 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~  214 (414)
                      +|.|||.|.+|+.+|..|.++|.+|+++++....       .. ......+++.|++++.+.... ..        .+. 
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~-------~~-~~~~~~l~~~gi~~~~g~~~~-~~--------~~~-   63 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP-------EL-LERQQELEQEGITVKLGKPLE-LE--------SFQ-   63 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch-------hh-HHHHHHHHHcCCEEEECCccc-hh--------hhh-
Confidence            5899999999999999999999999999876532       11 122244677799998764221 00        000 


Q ss_pred             CCCcEEecCEEEEccCCcCCChhhh
Q 014997          215 EDGSTIDADTIVIGIGAKPTVSPFE  239 (414)
Q Consensus       215 ~~g~~i~~D~vi~a~G~~p~~~~l~  239 (414)
                       . ..-.+|.||.++|..++.+.+.
T Consensus        64 -~-~~~~~d~vv~s~gi~~~~~~~~   86 (459)
T PRK02705         64 -P-WLDQPDLVVVSPGIPWDHPTLV   86 (459)
T ss_pred             -H-HhhcCCEEEECCCCCCCCHHHH
Confidence             0 0124799999999998876543

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=95.60  E-value=0.016  Score=58.24  Aligned_cols=36  Identities=31%  Similarity=0.418  Sum_probs=32.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhCC--CcEEEEeeCCccc
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLL  169 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l  169 (414)
                      ++|+|||||.+|+-+|..|++.|  .+|+|++.++++-
T Consensus         1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~G   38 (451)
T PRK11883          1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLG   38 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCc
Confidence            47999999999999999999987  8999999887653

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=95.58  E-value=0.14  Score=52.60  Aligned_cols=31  Identities=26%  Similarity=0.278  Sum_probs=28.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      -.|+|||+| .|+-+|..+++.|.+|.|+++.
T Consensus         8 ~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~   38 (513)
T PRK12837          8 VDVLVAGSG-GGVAGAYTAAREGLSVALVEAT   38 (513)
T ss_pred             cCEEEECch-HHHHHHHHHHHCCCcEEEEecC
Confidence            479999999 9999999999999999999865

>PRK07233 hypothetical protein; Provisional

Probab=95.53  E-value=0.018  Score=57.57  Aligned_cols=35  Identities=26%  Similarity=0.429  Sum_probs=32.5

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  169 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l  169 (414)
                      +|+|||+|..|+-+|..|++.|.+|+|+++.+++-
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~G   35 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLG   35 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCC
Confidence            58999999999999999999999999999987663

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=95.51  E-value=0.19  Score=52.09  Aligned_cols=33  Identities=30%  Similarity=0.381  Sum_probs=30.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      -.|+|||+|..|+-+|..+++.|.+|.|+++.+
T Consensus         5 ~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~   37 (549)
T PRK12834          5 ADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN   37 (549)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            469999999999999999999999999998765

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=95.43  E-value=0.23  Score=51.58  Aligned_cols=32  Identities=41%  Similarity=0.383  Sum_probs=28.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      -.|+|||+|..|+-+|..+++.|.+|.|+++.
T Consensus         7 ~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~   38 (557)
T PRK12844          7 YDVVVVGSGGGGMCAALAAADSGLEPLIVEKQ   38 (557)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEecC
Confidence            36899999999999999999999999988865

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=95.41  E-value=0.1  Score=51.55  Aligned_cols=96  Identities=23%  Similarity=0.413  Sum_probs=65.2

Q ss_pred             EEEECCChHHHHHHHHHHhC--CCcEEEEeeCCcccc--cccCHHH---------HHHHHHHHHhCCcEEEcCceEEEEE
Q 014997          136 VVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQ--RLFTPSL---------AQRYEQLYQQNGVKFVKGASIKNLE  202 (414)
Q Consensus       136 vvVvGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~l~--~~~~~~~---------~~~~~~~l~~~gv~i~~~~~v~~i~  202 (414)
                      ++|+|+|..|+.+|..+++.  ..+++++...+....  ......+         ........++.+++++.++.+..+.
T Consensus         1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id   80 (415)
T COG0446           1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPRFNRATGIDVRTGTEVTSID   80 (415)
T ss_pred             CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccchhHHhhCCEEeeCCEEEEec
Confidence            47999999999999998875  467777666543211  0011100         0000111146789999999999997


Q ss_pred             ecCCCcEEEEEeCCCcEEecCEEEEccCCcCCCh
Q 014997          203 AGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       203 ~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  236 (414)
                      ...  +  .+.+.+| ++.+|.+++++|.+|...
T Consensus        81 ~~~--~--~v~~~~g-~~~yd~LvlatGa~~~~~  109 (415)
T COG0446          81 PEN--K--VVLLDDG-EIEYDYLVLATGARPRPP  109 (415)
T ss_pred             CCC--C--EEEECCC-cccccEEEEcCCCcccCC
Confidence            432  2  5777888 899999999999998754

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.40  E-value=0.05  Score=54.80  Aligned_cols=81  Identities=17%  Similarity=0.163  Sum_probs=56.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHh--CCcEEEcCceEEEEEecCCCcE
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ--NGVKFVKGASIKNLEAGSDGRV  209 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~--~gv~i~~~~~v~~i~~~~~~~~  209 (414)
                      .+++++|+|.|.+|+.+|..|+++|.+|++.+..+..      +. .    +.+++  .|++++.+.....         
T Consensus         4 ~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~------~~-~----~~l~~~~~gi~~~~g~~~~~---------   63 (445)
T PRK04308          4 QNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKP------ER-V----AQIGKMFDGLVFYTGRLKDA---------   63 (445)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc------hh-H----HHHhhccCCcEEEeCCCCHH---------
Confidence            3689999999999999999999999999998765431      11 1    12343  4777765431100         


Q ss_pred             EEEEeCCCcEEecCEEEEccCCcCCChhhhh
Q 014997          210 AAVKLEDGSTIDADTIVIGIGAKPTVSPFER  240 (414)
Q Consensus       210 ~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~  240 (414)
                              ..-.+|+||+++|..|..+.++.
T Consensus        64 --------~~~~~d~vv~spgi~~~~p~~~~   86 (445)
T PRK04308         64 --------LDNGFDILALSPGISERQPDIEA   86 (445)
T ss_pred             --------HHhCCCEEEECCCCCCCCHHHHH
Confidence                    01257999999999998776543

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=95.39  E-value=0.021  Score=56.95  Aligned_cols=37  Identities=22%  Similarity=0.293  Sum_probs=34.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ  170 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  170 (414)
                      +||+|+|+|..|+-+|..|++.|.+||++++++++-.
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GG   37 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG   37 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCc
Confidence            5899999999999999999999999999999987643

>PTZ00367 squalene epoxidase; Provisional

Probab=95.38  E-value=0.029  Score=58.04  Aligned_cols=33  Identities=21%  Similarity=0.225  Sum_probs=31.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      .+|+|||||..|+-+|..|++.|.+|+++++.+
T Consensus        34 ~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         34 YDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             ccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            479999999999999999999999999999875

>PLN02268 probable polyamine oxidase

Probab=95.38  E-value=0.022  Score=57.12  Aligned_cols=37  Identities=24%  Similarity=0.409  Sum_probs=33.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ  170 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  170 (414)
                      .+|+|||+|.+|+-+|..|.+.|.+|+|++.++++-.
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GG   37 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGG   37 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCc
Confidence            3799999999999999999999999999998877643

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.34  E-value=0.054  Score=54.56  Aligned_cols=82  Identities=23%  Similarity=0.188  Sum_probs=56.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEE
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  211 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~  211 (414)
                      .+++++|+|+|.+|+.+|..|++.|.+|++.++.....     .    ...+.+++.|+++..+.....+          
T Consensus         4 ~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~-----~----~~~~~l~~~g~~~~~~~~~~~~----------   64 (447)
T PRK02472          4 QNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSE-----N----PEAQELLEEGIKVICGSHPLEL----------   64 (447)
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccc-----h----hHHHHHHhcCCEEEeCCCCHHH----------
Confidence            46889999999999999999999999999987543211     1    1123456778887654311100          


Q ss_pred             EEeCCCcEEecCEEEEccCCcCCChhh
Q 014997          212 VKLEDGSTIDADTIVIGIGAKPTVSPF  238 (414)
Q Consensus       212 v~~~~g~~i~~D~vi~a~G~~p~~~~l  238 (414)
                        +..    .+|.||.++|..++..++
T Consensus        65 --~~~----~~d~vV~s~gi~~~~~~~   85 (447)
T PRK02472         65 --LDE----DFDLMVKNPGIPYTNPMV   85 (447)
T ss_pred             --hcC----cCCEEEECCCCCCCCHHH
Confidence              000    479999999998876654

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=95.30  E-value=0.17  Score=52.56  Aligned_cols=58  Identities=19%  Similarity=0.217  Sum_probs=38.7

Q ss_pred             HHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEe-CCCc--EEec-CEEEEccCCc-CCChhhh
Q 014997          181 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL-EDGS--TIDA-DTIVIGIGAK-PTVSPFE  239 (414)
Q Consensus       181 ~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~-~~g~--~i~~-D~vi~a~G~~-p~~~~l~  239 (414)
                      +.+.+++.||++++++.++++..+ ++++..|.. .+|.  .+.+ ..||+|+|-- -|.++++
T Consensus       223 L~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n~em~~  285 (564)
T PRK12845        223 LFAGVLRAGIPIWTETSLVRLTDD-GGRVTGAVVDHRGREVTVTARRGVVLAAGGFDHDMEMRW  285 (564)
T ss_pred             HHHHHHHCCCEEEecCEeeEEEec-CCEEEEEEEEECCcEEEEEcCCEEEEecCCccccHHHHH
Confidence            334466789999999999998753 677777644 2343  3555 5788888854 4434443

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=95.27  E-value=0.025  Score=57.69  Aligned_cols=36  Identities=28%  Similarity=0.391  Sum_probs=33.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  168 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  168 (414)
                      ..+|+|||+|..|+-+|..|++.|.+|+|+++.+.+
T Consensus         3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~   38 (487)
T COG1233           3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRV   38 (487)
T ss_pred             CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCC
Confidence            467999999999999999999999999999988655

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=95.21  E-value=0.065  Score=53.34  Aligned_cols=82  Identities=23%  Similarity=0.232  Sum_probs=59.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEE
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV  212 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v  212 (414)
                      +++|+|+|-|-+|+.+|..|.++|.+|++.+..+.. ..   ..     ...+...+|++..+..-.             
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~-~~---~~-----~~~~~~~~i~~~~g~~~~-------------   64 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP-EG---LA-----AQPLLLEGIEVELGSHDD-------------   64 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc-cc---hh-----hhhhhccCceeecCccch-------------
Confidence            899999999999999999999999999999866533 11   01     113345677776654221             


Q ss_pred             EeCCCcEEecCEEEEccCCcCCChhhhh
Q 014997          213 KLEDGSTIDADTIVIGIGAKPTVSPFER  240 (414)
Q Consensus       213 ~~~~g~~i~~D~vi~a~G~~p~~~~l~~  240 (414)
                        .  ..-.+|.||.++|..|+.++++.
T Consensus        65 --~--~~~~~d~vV~SPGi~~~~p~v~~   88 (448)
T COG0771          65 --E--DLAEFDLVVKSPGIPPTHPLVEA   88 (448)
T ss_pred             --h--ccccCCEEEECCCCCCCCHHHHH
Confidence              0  13468999999999999886543

>PRK07208 hypothetical protein; Provisional

Probab=95.13  E-value=0.03  Score=56.90  Aligned_cols=38  Identities=21%  Similarity=0.302  Sum_probs=34.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  169 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l  169 (414)
                      +.++|+|||+|.+|+-+|..|.+.|.+|+++++.+++.
T Consensus         3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~G   40 (479)
T PRK07208          3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVG   40 (479)
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            45689999999999999999999999999999887653

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=95.10  E-value=0.27  Score=54.05  Aligned_cols=32  Identities=25%  Similarity=0.345  Sum_probs=29.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      -.|+|||+|..|+-+|..+++.|.+|+++++.
T Consensus        14 ~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~   45 (897)
T PRK13800         14 CDVLVIGGGTAGTMAALTAAEHGANVLLLEKA   45 (897)
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCCeEEEEecc
Confidence            46999999999999999999999999999865

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=95.09  E-value=0.063  Score=48.38  Aligned_cols=34  Identities=18%  Similarity=0.202  Sum_probs=31.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      ++++|+|||||.+|..=+..|.+.|.+|||+.+.
T Consensus        24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~   57 (223)
T PRK05562         24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK   57 (223)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence            5789999999999999999999999999999653

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=95.02  E-value=0.15  Score=52.38  Aligned_cols=55  Identities=20%  Similarity=0.308  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcC
Q 014997          177 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  233 (414)
Q Consensus       177 ~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p  233 (414)
                      +.+.+....++.|..++.++.|+++....++. ..|++.-|. |++..+|-|+|+-.
T Consensus       189 lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~-~gVeT~~G~-iet~~~VNaaGvWA  243 (856)
T KOG2844|consen  189 LCQALARAASALGALVIENCPVTGLHVETDKF-GGVETPHGS-IETECVVNAAGVWA  243 (856)
T ss_pred             HHHHHHHHHHhcCcEEEecCCcceEEeecCCc-cceeccCcc-eecceEEechhHHH
Confidence            44556666788999999999999997654433 378888874 99999999999754

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=95.00  E-value=0.057  Score=52.31  Aligned_cols=102  Identities=19%  Similarity=0.308  Sum_probs=57.0

Q ss_pred             eEEEECCChHHHHHHHHHHhCC-CcEEEEeeCCcc--cccc---------------------------------------
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHL--LQRL---------------------------------------  172 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~~--l~~~---------------------------------------  172 (414)
                      .++.||.|+..+-+|..|...+ .++..+++.+.+  -+.+                                       
T Consensus         4 D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl~~   83 (341)
T PF13434_consen    4 DLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRLYE   83 (341)
T ss_dssp             SEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-HHH
T ss_pred             eEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCChhh
Confidence            5789999999999999998876 778888876432  0000                                       


Q ss_pred             ------c---CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCC--cEEEEEe----CCCcEEecCEEEEccCCcCCCh
Q 014997          173 ------F---TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG--RVAAVKL----EDGSTIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       173 ------~---~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~--~~~~v~~----~~g~~i~~D~vi~a~G~~p~~~  236 (414)
                            +   -.+..++++-..++.+-.+..+.+|++|+...++  ....|.+    .+++.+.|+.||+++|..|..+
T Consensus        84 f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~iP  162 (341)
T PF13434_consen   84 FYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPRIP  162 (341)
T ss_dssp             HHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE---
T ss_pred             hhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCCCC
Confidence                  0   0112223322223344447789999999865443  3445665    2346899999999999988754

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=94.98  E-value=0.049  Score=53.45  Aligned_cols=60  Identities=18%  Similarity=0.349  Sum_probs=48.3

Q ss_pred             CccccCCCCCC----CCHhHHHHcCCeEEcCCcEEEEeCCCC---EEEeCCCcEEecCeEEEccCCC
Q 014997           40 FHTCVGSGGER----QTPEWYKEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCT   99 (414)
Q Consensus        40 ~~~~~g~~~~~----~~~~~~~~~~i~~~~~~~V~~id~~~~---~V~~~~g~~~~yd~LviAtG~~   99 (414)
                      .....|++.+.    +..+++++.|++++++++|..|+.+..   .|.+.+|.++.+|+||+|+|-.
T Consensus       163 ~~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grs  229 (486)
T COG2509         163 YQRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRS  229 (486)
T ss_pred             cccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcc
Confidence            34455666433    345778889999999999999998774   7889999999999999999964

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=94.96  E-value=0.062  Score=53.79  Aligned_cols=49  Identities=27%  Similarity=0.351  Sum_probs=42.2

Q ss_pred             HhHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCC
Q 014997           53 PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS  101 (414)
Q Consensus        53 ~~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~  101 (414)
                      .+.+++.||+++.+++|.+++.++..+.+.+|+++.||.||+|+|.+|.
T Consensus       186 ~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (427)
T TIGR03385       186 EEELKKHEINLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPN  234 (427)
T ss_pred             HHHHHHcCCEEEeCCEEEEEecCCCEEEEcCCCEEEeCEEEECCCccCC
Confidence            4667888999999999999998776556778889999999999999865

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=94.93  E-value=0.053  Score=54.89  Aligned_cols=79  Identities=19%  Similarity=0.196  Sum_probs=57.1

Q ss_pred             cCCCeEEEECCChHHHH-HHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcE
Q 014997          131 EKAKKVVVVGGGYIGME-VAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV  209 (414)
Q Consensus       131 ~~~~~vvVvGgG~~g~e-~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~  209 (414)
                      .+++++.|+|-|-+|+- +|..|.++|.+|++.+....       +.    . +.|++.|+++..+....          
T Consensus         5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~-------~~----~-~~l~~~gi~~~~~~~~~----------   62 (461)
T PRK00421          5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES-------AV----T-QRLLELGAIIFIGHDAE----------   62 (461)
T ss_pred             CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC-------hH----H-HHHHHCCCEEeCCCCHH----------
Confidence            45689999999999999 79999999999999876542       11    1 23667788887532110          


Q ss_pred             EEEEeCCCcEEecCEEEEccCCcCCChhhh
Q 014997          210 AAVKLEDGSTIDADTIVIGIGAKPTVSPFE  239 (414)
Q Consensus       210 ~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~  239 (414)
                         .+     -.+|.||+++|..|+.+.++
T Consensus        63 ---~~-----~~~d~vv~spgi~~~~~~~~   84 (461)
T PRK00421         63 ---NI-----KDADVVVYSSAIPDDNPELV   84 (461)
T ss_pred             ---HC-----CCCCEEEECCCCCCCCHHHH
Confidence               01     13799999999998776543

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=94.91  E-value=0.036  Score=56.63  Aligned_cols=35  Identities=26%  Similarity=0.349  Sum_probs=32.7

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  168 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  168 (414)
                      ++|+|||+|..|+-+|..|++.|.+|+++++++++
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~   36 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQP   36 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            57999999999999999999999999999998765

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=94.89  E-value=0.047  Score=46.55  Aligned_cols=32  Identities=28%  Similarity=0.338  Sum_probs=30.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEe
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF  163 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~  163 (414)
                      .+++|+|||||..|...+..|.+.|.+|+++.
T Consensus        12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs   43 (157)
T PRK06719         12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS   43 (157)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence            68999999999999999999999999999994

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=94.89  E-value=0.024  Score=44.62  Aligned_cols=35  Identities=37%  Similarity=0.478  Sum_probs=31.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      ++++++|||||..|..-+..|.+.|.+|+++.+..
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence            68999999999999999999999999999997653

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=94.83  E-value=0.039  Score=60.55  Aligned_cols=26  Identities=42%  Similarity=0.796  Sum_probs=23.8

Q ss_pred             CCCEEEcCCCCCCCCcEEEEcccccc
Q 014997          247 VGGIQVDGQFRTRMPGIFAIGDVAAF  272 (414)
Q Consensus       247 ~g~i~vd~~~~t~~~~IyA~GD~a~~  272 (414)
                      .|||.||.+++|++||+||+|||+..
T Consensus       361 ~GGi~vd~~~~T~v~GLfAaGE~a~~  386 (897)
T PRK13800        361 ASGVWVDEHARTTVPGLYAAGDLACV  386 (897)
T ss_pred             cceEEecCCCcccCCCeEechhccCc
Confidence            47999999999999999999999764

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=94.76  E-value=0.04  Score=55.66  Aligned_cols=35  Identities=26%  Similarity=0.404  Sum_probs=32.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhC----CCcEEEEeeCCcc
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGW----KLDTTIIFPENHL  168 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~----g~~Vtlv~~~~~~  168 (414)
                      ++|+|||||.+|+-+|..|.+.    |.+|+|+++++++
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~   41 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRV   41 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcC
Confidence            5799999999999999999998    9999999998765

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=94.73  E-value=0.029  Score=55.48  Aligned_cols=66  Identities=20%  Similarity=0.249  Sum_probs=50.7

Q ss_pred             CCCCCCCcc-ccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCCCE---EEeCCC--cEEecCeEEEccCCC
Q 014997           34 PARLPGFHT-CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQT---LITNSG--KLLKYGSLIVATGCT   99 (414)
Q Consensus        34 ~~~l~~~~~-~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~---V~~~~g--~~~~yd~LviAtG~~   99 (414)
                      ..++|.+|+ +.|..+.....+.+++.|++++.+++|+++..++..   |.++++  ..+.+|++|||||+.
T Consensus       250 v~E~ptlPPSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw  321 (419)
T TIGR03378       250 LCELPTMPPSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSF  321 (419)
T ss_pred             EEeCCCCCCCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCC
Confidence            445566654 566666666778889999999999999998876653   445665  479999999999987

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ]

Probab=94.70  E-value=0.075  Score=42.25  Aligned_cols=56  Identities=14%  Similarity=0.189  Sum_probs=43.7

Q ss_pred             EEEEEEe--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCChhh--hcCCCcHHHHHHHHh
Q 014997          350 IATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDKAK--LQQASSVEEALEIAR  405 (414)
Q Consensus       350 ~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~  405 (414)
                      +.++.++  +++|+|+.+++.++.++... ..+|+.+.+++...  +..+|+++|++.+|+
T Consensus        50 ~~Kli~d~~t~~IlGa~~vg~~a~e~I~~~~~ai~~~~t~~~l~~~~~~~Pt~se~~~~a~  110 (110)
T PF02852_consen   50 FVKLIFDKKTGRILGAQIVGPNASELINELALAIQNGLTVEDLADDIFYHPTFSEAIQEAA  110 (110)
T ss_dssp             EEEEEEETTTTBEEEEEEEETTHHHHHHHHHHHHHTTSBHHHHHTSBSSSTSTGHHHHHHH
T ss_pred             eeEEEEEeeccceeeeeeecCchHHHHHHHHHHHHcCCCHHHHhCCeeeCCChhHHHHHhC
Confidence            5566665  59999999977777776554 45678999888622  789999999999885

; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....

>TIGR02734 crtI_fam phytoene desaturase

Probab=94.67  E-value=0.036  Score=56.77  Aligned_cols=33  Identities=21%  Similarity=0.393  Sum_probs=30.9

Q ss_pred             EEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc
Q 014997          136 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  168 (414)
Q Consensus       136 vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  168 (414)
                      |+|||+|..|+-+|..|++.|.+|+|+++++++
T Consensus         1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~   33 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKP   33 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence            589999999999999999999999999998765

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=94.66  E-value=0.035  Score=53.22  Aligned_cols=34  Identities=26%  Similarity=0.272  Sum_probs=31.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      ...|+|||+|..|..+|..|.+.|.+|++++|.-
T Consensus        45 ~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl   78 (509)
T KOG1298|consen   45 AADVIIVGAGVAGSALAYALAKDGRRVHVIERDL   78 (509)
T ss_pred             cccEEEECCcchHHHHHHHHhhCCcEEEEEeccc
Confidence            4569999999999999999999999999999873

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=94.64  E-value=0.051  Score=50.93  Aligned_cols=40  Identities=23%  Similarity=0.331  Sum_probs=35.2

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccC
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFT  174 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~  174 (414)
                      +.+|||+|++|.-+|..++++|++|.+|++++++.....+
T Consensus         3 d~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYd   42 (374)
T COG0562           3 DYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYD   42 (374)
T ss_pred             cEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCcccc
Confidence            5789999999999999999999999999999887655443

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=94.59  E-value=0.11  Score=49.65  Aligned_cols=33  Identities=18%  Similarity=0.233  Sum_probs=30.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      .+|+|+|+|.+|.-+|..|++.|.+|+++.|..
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~   35 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR   35 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence            469999999999999999999999999998853

>PRK08275 putative oxidoreductase; Provisional

Probab=94.49  E-value=0.048  Score=56.59  Aligned_cols=51  Identities=10%  Similarity=0.136  Sum_probs=36.1

Q ss_pred             CCHhHHHHcCCeEEcCCcEEEEeCC-CCEE------EeCCCc--EEecCeEEEccCCCCC
Q 014997           51 QTPEWYKEKGIEMIYQDPVTSIDIE-KQTL------ITNSGK--LLKYGSLIVATGCTAS  101 (414)
Q Consensus        51 ~~~~~~~~~~i~~~~~~~V~~id~~-~~~V------~~~~g~--~~~yd~LviAtG~~~~  101 (414)
                      ...+.+++.||+++.++.|+++-.+ +..+      .+.+|+  .+.++.||||||....
T Consensus       142 ~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~  201 (554)
T PRK08275        142 VLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGR  201 (554)
T ss_pred             HHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCccc
Confidence            3445566789999999999998654 3222      133564  4789999999998653

>PLN02576 protoporphyrinogen oxidase

Probab=94.49  E-value=0.054  Score=55.31  Aligned_cols=37  Identities=24%  Similarity=0.316  Sum_probs=33.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhC-CCcEEEEeeCCccc
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPENHLL  169 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~l  169 (414)
                      ..+|+|||||.+|+-+|..|.+. |.+|+|+++.+++-
T Consensus        12 ~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvG   49 (496)
T PLN02576         12 SKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVG   49 (496)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence            45799999999999999999999 99999999987764

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=94.45  E-value=0.1  Score=51.04  Aligned_cols=49  Identities=12%  Similarity=0.149  Sum_probs=38.5

Q ss_pred             CHhHHHHcCCeEEcCCcEEEEeCCCCEEEeCCC-cEEecCeEEEccCCCC
Q 014997           52 TPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG-KLLKYGSLIVATGCTA  100 (414)
Q Consensus        52 ~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g-~~~~yd~LviAtG~~~  100 (414)
                      ....+++.||+++++++|++|+.....|.+..+ ..+.+|+||||||+.+
T Consensus        92 L~~~l~~~gV~i~~~~~V~~i~~~~~~v~~~~~~~~~~a~~vIlAtGG~s  141 (376)
T TIGR03862        92 WLKRLAEQGVQFHTRHRWIGWQGGTLRFETPDGQSTIEADAVVLALGGAS  141 (376)
T ss_pred             HHHHHHHCCCEEEeCCEEEEEeCCcEEEEECCCceEEecCEEEEcCCCcc
Confidence            345567899999999999999554456776543 4699999999999865

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>TIGR02731 phytoene_desat phytoene desaturase

Probab=94.43  E-value=0.052  Score=54.75  Aligned_cols=35  Identities=17%  Similarity=0.250  Sum_probs=31.8

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  169 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l  169 (414)
                      +|+|||+|..|+-+|..|.+.|.+|+++++.+++-
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~G   35 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLG   35 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            58999999999999999999999999999887543

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=94.35  E-value=0.29  Score=46.81  Aligned_cols=32  Identities=19%  Similarity=0.283  Sum_probs=29.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      .+|.|||+|.+|.-+|..|++.|.+|+++.|.
T Consensus         6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~   37 (313)
T PRK06249          6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRS   37 (313)
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence            57999999999999999999999999999875

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.30  E-value=0.13  Score=52.54  Aligned_cols=79  Identities=22%  Similarity=0.237  Sum_probs=55.6

Q ss_pred             cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEE
Q 014997          131 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  210 (414)
Q Consensus       131 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~  210 (414)
                      ..+++++|+|.|.+|+.++..|..+|.+|++.+..+        ..    . +.+++.|+.+..+...       ..   
T Consensus        10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~--------~~----~-~~l~~~g~~~~~~~~~-------~~---   66 (488)
T PRK03369         10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDP--------DA----L-RPHAERGVATVSTSDA-------VQ---   66 (488)
T ss_pred             cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH--------HH----H-HHHHhCCCEEEcCcch-------Hh---
Confidence            467899999999999999999999999999876432        01    1 2255578877643210       00   


Q ss_pred             EEEeCCCcEEecCEEEEccCCcCCChhhh
Q 014997          211 AVKLEDGSTIDADTIVIGIGAKPTVSPFE  239 (414)
Q Consensus       211 ~v~~~~g~~i~~D~vi~a~G~~p~~~~l~  239 (414)
                             ..-.+|.||.++|..++.+.++
T Consensus        67 -------~l~~~D~VV~SpGi~~~~p~~~   88 (488)
T PRK03369         67 -------QIADYALVVTSPGFRPTAPVLA   88 (488)
T ss_pred             -------HhhcCCEEEECCCCCCCCHHHH
Confidence                   0123699999999998876543

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=94.29  E-value=0.057  Score=54.67  Aligned_cols=36  Identities=31%  Similarity=0.397  Sum_probs=31.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhC------CCcEEEEeeCCccc
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGW------KLDTTIIFPENHLL  169 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~------g~~Vtlv~~~~~~l  169 (414)
                      ++|+|||+|.+|+-+|..|.+.      +.+|+|++.++++-
T Consensus         2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~G   43 (463)
T PRK12416          2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLG   43 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCcc
Confidence            5799999999999999999985      37899999987763

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=94.24  E-value=0.075  Score=46.44  Aligned_cols=36  Identities=28%  Similarity=0.339  Sum_probs=30.3

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ  170 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  170 (414)
                      +|.|||+|..|..+|..++..|.+|+++++.+.-+.
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~   36 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALE   36 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHH
Confidence            589999999999999999999999999998765443

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PLN02612 phytoene desaturase

Probab=94.23  E-value=0.2  Score=52.16  Aligned_cols=57  Identities=25%  Similarity=0.327  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCC
Q 014997          175 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  231 (414)
Q Consensus       175 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~  231 (414)
                      ..+.+.+.+.+++.|.+|++++.|++|..++++.+..+.+.+|+++.+|.||++++.
T Consensus       308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~  364 (567)
T PLN02612        308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV  364 (567)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH
Confidence            345667777788899999999999999876677666788888989999999999764

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=94.22  E-value=0.079  Score=52.58  Aligned_cols=48  Identities=27%  Similarity=0.381  Sum_probs=31.7

Q ss_pred             HhHHHHcCCeEEcCCcEEEEeCCCC---EEEeCCCcEEecCeEEEccCCCC
Q 014997           53 PEWYKEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTA  100 (414)
Q Consensus        53 ~~~~~~~~i~~~~~~~V~~id~~~~---~V~~~~g~~~~yd~LviAtG~~~  100 (414)
                      ...+++.||+++++++|.+|..++.   .|.++++..+.+|+||||||+..
T Consensus       116 ~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG~S  166 (409)
T PF03486_consen  116 LEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGGKS  166 (409)
T ss_dssp             HHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----SS
T ss_pred             HHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCCCC
Confidence            3445678999999999999976443   57777778899999999999864

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=94.17  E-value=0.47  Score=46.50  Aligned_cols=96  Identities=19%  Similarity=0.320  Sum_probs=67.1

Q ss_pred             HHHHHHHHHhCCCcEEEEeeCCcccccc-cCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCC-cEEec
Q 014997          145 GMEVAAAAVGWKLDTTIIFPENHLLQRL-FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-STIDA  222 (414)
Q Consensus       145 g~e~A~~l~~~g~~Vtlv~~~~~~l~~~-~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g-~~i~~  222 (414)
                      .-++-..+.++|.... .++..++.|.. -..++.+.+...+++.||++++++.|++|+ + ++  ..+.+.++ ..+.|
T Consensus        56 ~~d~~~fF~~~Gi~~~-~e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~-~-~~--~~v~~~~~~~~~~a  130 (376)
T TIGR03862        56 AVALQDWARGLGIETF-VGSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQ-G-GT--LRFETPDGQSTIEA  130 (376)
T ss_pred             HHHHHHHHHHCCCceE-ECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEe-C-Cc--EEEEECCCceEEec
Confidence            4556667788886543 45566777633 235778889999999999999999999993 2 22  34565433 46999


Q ss_pred             CEEEEccCCcC--CC-------hhhhhcCCcc
Q 014997          223 DTIVIGIGAKP--TV-------SPFERVGLNS  245 (414)
Q Consensus       223 D~vi~a~G~~p--~~-------~~l~~~gl~~  245 (414)
                      |.||+|+|-.+  .+       .++++.|...
T Consensus       131 ~~vIlAtGG~s~p~~Gs~g~gy~la~~lGh~i  162 (376)
T TIGR03862       131 DAVVLALGGASWSQLGSDGAWQQVLDQRGVSV  162 (376)
T ss_pred             CEEEEcCCCccccccCCCcHHHHHHHHCCCcc
Confidence            99999999864  22       3566666543

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PLN03000 amine oxidase

Probab=94.02  E-value=0.062  Score=57.75  Aligned_cols=40  Identities=23%  Similarity=0.368  Sum_probs=35.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccc
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL  172 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~  172 (414)
                      .++|+|||+|..|+.+|..|.+.|.+|++++..+++..+.
T Consensus       184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi  223 (881)
T PLN03000        184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRV  223 (881)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCc
Confidence            4789999999999999999999999999999988775544

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=94.02  E-value=0.073  Score=53.07  Aligned_cols=35  Identities=20%  Similarity=0.428  Sum_probs=32.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhCC--CcEEEEeeCCcc
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHL  168 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~  168 (414)
                      ++++|||||.+|+-.|..|.+.+  ++++++++.+++
T Consensus         1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~   37 (444)
T COG1232           1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRV   37 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCC
Confidence            47999999999999999999999  899999998665

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=93.98  E-value=1.2  Score=42.35  Aligned_cols=34  Identities=24%  Similarity=0.272  Sum_probs=28.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhC----CCcEEEEeeC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGW----KLDTTIIFPE  165 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~----g~~Vtlv~~~  165 (414)
                      ..-.|+|||||.+|...|..|.++    |.+|.++++.
T Consensus        85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErd  122 (509)
T KOG2853|consen   85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERD  122 (509)
T ss_pred             cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEecc
Confidence            345799999999999999988654    6889999987

>PRK08071 L-aspartate oxidase; Provisional

Probab=93.93  E-value=0.084  Score=54.15  Aligned_cols=54  Identities=20%  Similarity=0.361  Sum_probs=37.5

Q ss_pred             CCCEEEcCCCCCCCCcEEEEccccccCCccCCc-ccccccHHHHHHHHHHHHHHHhc
Q 014997          247 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR-TARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       247 ~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~-~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                      -|||.||.+.+|++|++||+|+|+...  ..|. ...-.+...+...|+.|++++..
T Consensus       332 ~GGi~vd~~~~t~I~GLyAaGE~a~~g--~hGanrl~g~sl~~~~v~G~~Ag~~aa~  386 (510)
T PRK08071        332 MGGVKTNLDGETSIPGLYAIGEVACTG--VHGANRLASNSLLEGLVFGKRAAEHILT  386 (510)
T ss_pred             cCCEEECCCCcccCCCeEEcccccccc--cCCCcccchHHHHHHHHHHHHHHHHHHh
Confidence            489999999999999999999997421  1111 01112455677778888888764

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=93.93  E-value=0.078  Score=55.60  Aligned_cols=46  Identities=22%  Similarity=0.234  Sum_probs=32.2

Q ss_pred             HHHHcC-CeEEcCCcEEEEeCCCCEE------EeCCCc--EEecCeEEEccCCCC
Q 014997           55 WYKEKG-IEMIYQDPVTSIDIEKQTL------ITNSGK--LLKYGSLIVATGCTA  100 (414)
Q Consensus        55 ~~~~~~-i~~~~~~~V~~id~~~~~V------~~~~g~--~~~yd~LviAtG~~~  100 (414)
                      .+++.+ |+++.++.|+++..++..|      .+.+|+  .+.++.||+|||...
T Consensus       141 ~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~  195 (608)
T PRK06854        141 AAKKALGDNVLNRVFITDLLVDDNRIAGAVGFSVRENKFYVFKAKAVIVATGGAA  195 (608)
T ss_pred             HHHhcCCCEEEeCCEEEEEEEeCCEEEEEEEEEccCCcEEEEECCEEEECCCchh
Confidence            344554 9999999999986443322      234554  689999999999754

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=93.92  E-value=0.081  Score=51.84  Aligned_cols=35  Identities=20%  Similarity=0.342  Sum_probs=31.4

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  169 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l  169 (414)
                      +++|||+|.+|+-+|..|++.|.+|+++++++.+.
T Consensus         3 DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iG   37 (377)
T TIGR00031         3 DYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIG   37 (377)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence            58999999999999999999999999999876543

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PRK07804 L-aspartate oxidase; Provisional

Probab=93.89  E-value=0.075  Score=54.94  Aligned_cols=54  Identities=22%  Similarity=0.270  Sum_probs=36.0

Q ss_pred             CCCEEEcCCCCCCCCcEEEEccccccCCccCCc-ccccccHHHHHHHHHHHHHHHhc
Q 014997          247 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR-TARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       247 ~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~-~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                      .|+|.||.+++|++|++||+|+|+...  ..|. ...-.+...+...|+.+++++..
T Consensus       357 ~GGi~vd~~~~t~i~GLyAaGe~~~~g--~hGa~~l~~~sl~~~~v~G~~ag~~aa~  411 (541)
T PRK07804        357 CGGVVTDVYGRTSVPGLYAAGEVACTG--VHGANRLASNSLLEGLVVGERAGAAAAA  411 (541)
T ss_pred             CCCEEECCCCcccCCCeEEcccccccc--cCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence            489999999999999999999997421  1111 00011334566677777777753

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.87  E-value=0.15  Score=51.83  Aligned_cols=79  Identities=19%  Similarity=0.215  Sum_probs=55.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEE
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  211 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~  211 (414)
                      .+++|+|+|.|-+|+-+|..|.+.|.+|++.++...        ..    .+.+++.||+++.+....       .    
T Consensus        14 ~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~--------~~----~~~l~~~gi~~~~~~~~~-------~----   70 (473)
T PRK00141         14 LSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNET--------AR----HKLIEVTGVADISTAEAS-------D----   70 (473)
T ss_pred             cCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChH--------HH----HHHHHhcCcEEEeCCCch-------h----
Confidence            467899999999999999999999999988775321        11    123455688876542100       0    


Q ss_pred             EEeCCCcEEecCEEEEccCCcCCChhhh
Q 014997          212 VKLEDGSTIDADTIVIGIGAKPTVSPFE  239 (414)
Q Consensus       212 v~~~~g~~i~~D~vi~a~G~~p~~~~l~  239 (414)
                       .     .-++|+||.++|..|+.+.+.
T Consensus        71 -~-----~~~~d~vV~Spgi~~~~p~~~   92 (473)
T PRK00141         71 -Q-----LDSFSLVVTSPGWRPDSPLLV   92 (473)
T ss_pred             -H-----hcCCCEEEeCCCCCCCCHHHH
Confidence             0     124799999999998876653

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=93.86  E-value=0.088  Score=51.77  Aligned_cols=41  Identities=22%  Similarity=0.305  Sum_probs=36.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccc
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL  172 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~  172 (414)
                      +..+|+|+|+|++||-.|..|.+.|.+|++++.++++..|+
T Consensus         6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~   46 (450)
T COG1231           6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRS   46 (450)
T ss_pred             CCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCcee
Confidence            56789999999999999999999999999999888775443

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=93.86  E-value=0.25  Score=47.31  Aligned_cols=58  Identities=22%  Similarity=0.434  Sum_probs=47.2

Q ss_pred             CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcC
Q 014997          174 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  233 (414)
Q Consensus       174 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p  233 (414)
                      +..+...+.+.+++.|++++.++.|+.+... ++.+..|.+.+| .+.||.||+|+|...
T Consensus       136 p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~-~~~~~~v~~~~g-~~~a~~vV~a~G~~~  193 (337)
T TIGR02352       136 PRALLKALEKALEKLGVEIIEHTEVQHIEIR-GEKVTAIVTPSG-DVQADQVVLAAGAWA  193 (337)
T ss_pred             hHHHHHHHHHHHHHcCCEEEccceEEEEEee-CCEEEEEEcCCC-EEECCEEEEcCChhh
Confidence            3467777888889999999999999999864 455666777777 799999999999654

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>PLN02529 lysine-specific histone demethylase 1

Probab=93.80  E-value=0.091  Score=55.88  Aligned_cols=35  Identities=20%  Similarity=0.451  Sum_probs=32.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  167 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  167 (414)
                      .++|+|||+|..|+.+|..|+++|.+|++++..++
T Consensus       160 ~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~  194 (738)
T PLN02529        160 EGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNR  194 (738)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCcc
Confidence            46899999999999999999999999999998654

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=93.75  E-value=0.088  Score=48.92  Aligned_cols=34  Identities=26%  Similarity=0.160  Sum_probs=30.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCC-CcEEEEeeC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPE  165 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g-~~Vtlv~~~  165 (414)
                      ...+|+|+|.|-+|.++|..|++.| .++++++..
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D   63 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD   63 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            5689999999999999999999999 678888765

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=93.68  E-value=0.21  Score=47.65  Aligned_cols=81  Identities=19%  Similarity=0.295  Sum_probs=54.2

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEe
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL  214 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~  214 (414)
                      +|.|+|+|.+|+-+|..|.+.|.+|+++.|.++              .+.+++.|+.+.....  ...      ......
T Consensus         2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~--------------~~~l~~~GL~i~~~~~--~~~------~~~~~~   59 (307)
T COG1893           2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRR--------------LEALKKKGLRIEDEGG--NFT------TPVVAA   59 (307)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH--------------HHHHHhCCeEEecCCC--ccc------cccccc
Confidence            689999999999999999999988888877653              1346677888876544  100      001111


Q ss_pred             CC-CcEEecCEEEEccCCcCCChh
Q 014997          215 ED-GSTIDADTIVIGIGAKPTVSP  237 (414)
Q Consensus       215 ~~-g~~i~~D~vi~a~G~~p~~~~  237 (414)
                      .+ ...-++|.||+++-..-..+.
T Consensus        60 ~~~~~~~~~Dlviv~vKa~q~~~a   83 (307)
T COG1893          60 TDAEALGPADLVIVTVKAYQLEEA   83 (307)
T ss_pred             cChhhcCCCCEEEEEeccccHHHH
Confidence            11 123479999999776544333

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=93.61  E-value=0.31  Score=46.23  Aligned_cols=30  Identities=23%  Similarity=0.378  Sum_probs=28.2

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEee
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFP  164 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~  164 (414)
                      +|.|+|+|.+|.-+|..|++.|.+|+++.|
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            589999999999999999999999999876

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=93.61  E-value=0.096  Score=53.21  Aligned_cols=35  Identities=26%  Similarity=0.344  Sum_probs=32.0

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  169 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l  169 (414)
                      +|+|||+|..|+-+|..|.+.|.+|+++++.+++-
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~G   35 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIG   35 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCC
Confidence            48999999999999999999999999999987653

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=93.59  E-value=0.088  Score=53.57  Aligned_cols=31  Identities=19%  Similarity=0.276  Sum_probs=28.9

Q ss_pred             eEEEECCChHHHHHHHHHHhC--CCcEEEEeeC
Q 014997          135 KVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPE  165 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~--g~~Vtlv~~~  165 (414)
                      .|+|||||.+|+-+|..|+++  |.+|+|+++.
T Consensus         2 DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~   34 (483)
T TIGR01320         2 DVVLIGAGIMSATLGVLLRELEPNWSITLIERL   34 (483)
T ss_pred             cEEEECchHHHHHHHHHHHHhCCCCeEEEEEcC
Confidence            589999999999999999997  8999999985

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK09077 L-aspartate oxidase; Provisional

Probab=93.56  E-value=0.12  Score=53.46  Aligned_cols=54  Identities=24%  Similarity=0.344  Sum_probs=37.3

Q ss_pred             CCCEEEcCCCCCCCCcEEEEccccccCCccCCc-ccccccHHHHHHHHHHHHHHHhc
Q 014997          247 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR-TARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       247 ~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~-~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                      .|||.||.+.+|++|++||+|+|+...  ..|. +..-.....|...|+.|++++..
T Consensus       353 ~GGi~vd~~~~t~I~GLyAaGE~a~~g--~hGanrl~gnsl~~~~vfG~~Ag~~aa~  407 (536)
T PRK09077        353 CGGVMVDLHGRTDLDGLYAIGEVSYTG--LHGANRMASNSLLECLVYGRSAAEDILS  407 (536)
T ss_pred             cCCeeECCCCccccCCEEecccccccc--cCCCccchhhhHHHHHHHHHHHHHHHHH
Confidence            589999999999999999999997321  1111 01112445577778888887764

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=93.54  E-value=0.12  Score=53.90  Aligned_cols=55  Identities=18%  Similarity=0.326  Sum_probs=35.3

Q ss_pred             cCCCEEEcCCCCCCCCcEEEEccccccCCccCCc-ccccccHHHHHHHHHHHHHHHhc
Q 014997          246 SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR-TARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       246 ~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~-~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                      ..|+|.||.+++|++|++||+|+|+...  ..|. +..-.....|...|+.|++++..
T Consensus       357 t~GGi~vd~~~~t~i~GLyAaGe~~~~g--~hGanrlggnsl~~a~v~Gr~Ag~~aa~  412 (582)
T PRK09231        357 TMGGIETDQNCETRIKGLFAVGECSSVG--LHGANRLGSNSLAELVVFGRVAGEQAAE  412 (582)
T ss_pred             eCCCEEECCCCccccCCEEecccccccc--cCCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence            3589999999999999999999997421  1111 00011234456666666666653

>TIGR02730 carot_isom carotene isomerase

Probab=93.46  E-value=0.1  Score=53.30  Aligned_cols=34  Identities=15%  Similarity=0.089  Sum_probs=31.5

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  168 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  168 (414)
                      .|+|||+|..|+-+|..|++.|.+|+++++++.+
T Consensus         2 dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~   35 (493)
T TIGR02730         2 DAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIP   35 (493)
T ss_pred             cEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence            4899999999999999999999999999998654

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>TIGR00551 nadB L-aspartate oxidase

Probab=93.43  E-value=0.14  Score=52.33  Aligned_cols=53  Identities=28%  Similarity=0.389  Sum_probs=37.3

Q ss_pred             CCCEEEcCCCCCCCCcEEEEccccc--cCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997          247 VGGIQVDGQFRTRMPGIFAIGDVAA--FPLKMYDRTARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       247 ~g~i~vd~~~~t~~~~IyA~GD~a~--~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                      .|||.||.+.||++||+||+|+|+.  .....  . ..-.+...|...|+.|++++..
T Consensus       333 ~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGan--r-l~g~sl~~~~v~G~~Ag~~aa~  387 (488)
T TIGR00551       333 CGGISVDDHGRTTVPGLYAIGEVACTGLHGAN--R-LASNSLLECLVFGWSAAEDISR  387 (488)
T ss_pred             cCCEEECCCCcccCCCEEECccccccccCccc--c-cchhHHHHHHHHHHHHHHHHHh
Confidence            5899999999999999999999973  22111  0 1112345577778888888764

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=93.34  E-value=0.52  Score=48.78  Aligned_cols=32  Identities=31%  Similarity=0.431  Sum_probs=29.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      -.|+|||+|..|+-.|..++..|.+|.++++.
T Consensus         7 ~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~   38 (562)
T COG1053           7 FDVVVIGGGGAGLRAAIEAAEAGLKVALLSKA   38 (562)
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCcEEEEEcc
Confidence            47999999999999999999999999999876

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.21  E-value=0.24  Score=46.55  Aligned_cols=33  Identities=27%  Similarity=0.313  Sum_probs=30.6

Q ss_pred             CCCeEEEECCCh-HHHHHHHHHHhCCCcEEEEee
Q 014997          132 KAKKVVVVGGGY-IGMEVAAAAVGWKLDTTIIFP  164 (414)
Q Consensus       132 ~~~~vvVvGgG~-~g~e~A~~l~~~g~~Vtlv~~  164 (414)
                      ++++++|+|.|. .|.-+|..|.+.|..||++++
T Consensus       158 ~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~  191 (283)
T PRK14192        158 AGKHAVVVGRSAILGKPMAMMLLNANATVTICHS  191 (283)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeC
Confidence            789999999997 999999999999999999876

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.20  E-value=0.33  Score=49.23  Aligned_cols=81  Identities=15%  Similarity=0.092  Sum_probs=53.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEE
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  211 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~  211 (414)
                      .+++|+|+|.|.+|..+|..|.++|.+|++.+..+..-    .+.    ..+ +++ ++.+..+..       ..     
T Consensus         7 ~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~----~~~----~~~-l~~-~~~~~~~~~-------~~-----   64 (468)
T PRK04690          7 EGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVE----ARE----VGA-LAD-AALLVETEA-------SA-----   64 (468)
T ss_pred             CCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCccc----chH----HHH-Hhh-cCEEEeCCC-------Ch-----
Confidence            47899999999999999999999999999987544210    111    112 444 333332210       00     


Q ss_pred             EEeCCCcEEecCEEEEccCCcCCChhhh
Q 014997          212 VKLEDGSTIDADTIVIGIGAKPTVSPFE  239 (414)
Q Consensus       212 v~~~~g~~i~~D~vi~a~G~~p~~~~l~  239 (414)
                           ...-.+|+||.++|..|+.+.++
T Consensus        65 -----~~~~~~d~vV~SpgI~~~~p~~~   87 (468)
T PRK04690         65 -----QRLAAFDVVVKSPGISPYRPEAL   87 (468)
T ss_pred             -----HHccCCCEEEECCCCCCCCHHHH
Confidence                 00124799999999998876543

>PLN02487 zeta-carotene desaturase

Probab=93.19  E-value=0.13  Score=53.19  Aligned_cols=35  Identities=23%  Similarity=0.354  Sum_probs=32.7

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  168 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  168 (414)
                      ++|+|||+|..|+-+|..|.+.|.+|+++++.+++
T Consensus        76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~  110 (569)
T PLN02487         76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFI  110 (569)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCC
Confidence            48999999999999999999999999999988765

>TIGR02731 phytoene_desat phytoene desaturase

Probab=93.15  E-value=0.4  Score=48.32  Aligned_cols=57  Identities=23%  Similarity=0.311  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCc-----EEecCEEEEccCC
Q 014997          175 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTIVIGIGA  231 (414)
Q Consensus       175 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~-----~i~~D~vi~a~G~  231 (414)
                      ..+.+.+.+.+++.|.+|++++.|++|...+++.+..+.+.+|+     ++.||.||++++.
T Consensus       213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~  274 (453)
T TIGR02731       213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV  274 (453)
T ss_pred             HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence            34566777888889999999999999986556767677776665     7999999999865

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=93.14  E-value=0.1  Score=50.23  Aligned_cols=48  Identities=23%  Similarity=0.369  Sum_probs=37.4

Q ss_pred             CHhHHHHcCCeEEcCCcEEEEeCCCCE---EEeCCCcEEecCeEEEccCCCC
Q 014997           52 TPEWYKEKGIEMIYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGCTA  100 (414)
Q Consensus        52 ~~~~~~~~~i~~~~~~~V~~id~~~~~---V~~~~g~~~~yd~LviAtG~~~  100 (414)
                      ..+.+++.|++++.+++|++|+.+...   |.+++|+ +.+|++|+|+|...
T Consensus       153 l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s  203 (358)
T PF01266_consen  153 LAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWS  203 (358)
T ss_dssp             HHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGH
T ss_pred             hHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEecccccc
Confidence            345567789999999999999987654   7788887 99999999999864

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=93.01  E-value=0.15  Score=54.72  Aligned_cols=36  Identities=22%  Similarity=0.340  Sum_probs=32.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  168 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  168 (414)
                      .++|+|||+|..|+.+|..|.+.|.+|+++++.+++
T Consensus       238 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~  273 (808)
T PLN02328        238 PANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARP  273 (808)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccC
Confidence            367999999999999999999999999999987554

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=92.98  E-value=0.15  Score=49.49  Aligned_cols=54  Identities=30%  Similarity=0.513  Sum_probs=43.3

Q ss_pred             HhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCCh-hhhhcCC
Q 014997          186 QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS-PFERVGL  243 (414)
Q Consensus       186 ~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~-~l~~~gl  243 (414)
                      ...||.+..+.+|..+... +.   .|.+.||.+|.+|-.++|||.+|... .+++++-
T Consensus       268 ~nGGvAvl~G~kvvkid~~-d~---~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A~~  322 (659)
T KOG1346|consen  268 VNGGVAVLRGRKVVKIDEE-DK---KVILNDGTTIGYDKCLIATGVRPKKLQVFEEASE  322 (659)
T ss_pred             ccCceEEEeccceEEeecc-cC---eEEecCCcEeehhheeeecCcCcccchhhhhcCH
Confidence            5678999999999999743 22   67899999999999999999999643 4555543

>TIGR02730 carot_isom carotene isomerase

Probab=92.93  E-value=0.43  Score=48.76  Aligned_cols=57  Identities=23%  Similarity=0.284  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCc
Q 014997          175 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  232 (414)
Q Consensus       175 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~  232 (414)
                      ..+.+.+.+.+++.|++|+.++.|++|..+ ++++..|.+.+|+++.+|.||++.|..
T Consensus       229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~g~~~~ad~vV~a~~~~  285 (493)
T TIGR02730       229 GQIAESLVKGLEKHGGQIRYRARVTKIILE-NGKAVGVKLADGEKIYAKRIVSNATRW  285 (493)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeeeEEEec-CCcEEEEEeCCCCEEEcCEEEECCChH
Confidence            356777888899999999999999999754 566778889999899999999998753

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=92.91  E-value=0.53  Score=47.28  Aligned_cols=60  Identities=18%  Similarity=0.330  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997          175 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       175 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (414)
                      .++.+.+.+.++..|.++++++.|++|..++++.+..|.+.+|+++.|+.||....+.|.
T Consensus       232 g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~  291 (443)
T PTZ00363        232 GGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPD  291 (443)
T ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccccc
Confidence            367777778888899999999999999876567777899999999999999999888876

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=92.89  E-value=0.14  Score=43.66  Aligned_cols=32  Identities=25%  Similarity=0.323  Sum_probs=29.6

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      +|.|+|+|..|.-+|..|+..|.+|+++.|.+
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            58999999999999999999999999998754

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=92.86  E-value=0.17  Score=52.38  Aligned_cols=52  Identities=15%  Similarity=0.238  Sum_probs=36.5

Q ss_pred             CCCHhHHHHcCCeEEcCCcEEEEeCCC-CEEE------eCCCc--EEecCeEEEccCCCCC
Q 014997           50 RQTPEWYKEKGIEMIYQDPVTSIDIEK-QTLI------TNSGK--LLKYGSLIVATGCTAS  101 (414)
Q Consensus        50 ~~~~~~~~~~~i~~~~~~~V~~id~~~-~~V~------~~~g~--~~~yd~LviAtG~~~~  101 (414)
                      ....+.+++.||+++.++.++++..++ ..|.      +.+|+  .+.++.||+|||....
T Consensus       138 ~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~  198 (543)
T PRK06263        138 MGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAGQ  198 (543)
T ss_pred             HHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCCC
Confidence            334555667899999999999886543 3121      14564  5889999999998654

>PRK08401 L-aspartate oxidase; Provisional

Probab=92.83  E-value=0.18  Score=51.06  Aligned_cols=50  Identities=22%  Similarity=0.383  Sum_probs=35.8

Q ss_pred             CCCHhHHHHcCCeEEcCCcEEEEeCCCCE---EEeCCCcEEecCeEEEccCCCCC
Q 014997           50 RQTPEWYKEKGIEMIYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGCTAS  101 (414)
Q Consensus        50 ~~~~~~~~~~~i~~~~~~~V~~id~~~~~---V~~~~g~~~~yd~LviAtG~~~~  101 (414)
                      ....+.+++.|++++.+ .++.+..++..   |.+ +++.+.++.+|||||+...
T Consensus       124 ~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~-~g~~i~a~~VVLATGG~~~  176 (466)
T PRK08401        124 KILYKHARELGVNFIRG-FAEELAIKNGKAYGVFL-DGELLKFDATVIATGGFSG  176 (466)
T ss_pred             HHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEE-CCEEEEeCeEEECCCcCcC
Confidence            34455667789999875 78877654432   333 5667999999999998764

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=92.83  E-value=0.7  Score=43.45  Aligned_cols=65  Identities=9%  Similarity=0.132  Sum_probs=45.1

Q ss_pred             HHHHHHhCCcEEEcCceEEEEEecCCCc---EEEEEeCCCcEEecCEEEEccCCcCCChhhhhcCCccc
Q 014997          181 YEQLYQQNGVKFVKGASIKNLEAGSDGR---VAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS  246 (414)
Q Consensus       181 ~~~~l~~~gv~i~~~~~v~~i~~~~~~~---~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~  246 (414)
                      +-+.++..|-+++++.+++.+..+.++.   ...|.-..++++.+..++.|+|...+ ...+.+|++.+
T Consensus       202 ~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sd-r~aa~sgc~~d  269 (453)
T KOG2665|consen  202 FGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSD-RCAALSGCELD  269 (453)
T ss_pred             HHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHh-HHHHHhCCCCC
Confidence            4445788888999999999887654431   22344445689999999999999875 34555565543

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=92.73  E-value=1.1  Score=42.42  Aligned_cols=32  Identities=31%  Similarity=0.366  Sum_probs=29.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      ..|+|||+|..|+-.|..|+..|.+|.+++..
T Consensus         6 ~dvivvgaglaglvaa~elA~aG~~V~ildQE   37 (552)
T COG3573           6 ADVIVVGAGLAGLVAAAELADAGKRVLILDQE   37 (552)
T ss_pred             ccEEEECccHHHHHHHHHHHhcCceEEEEccc
Confidence            46899999999999999999999999998765

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=92.73  E-value=0.47  Score=39.24  Aligned_cols=34  Identities=35%  Similarity=0.407  Sum_probs=31.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCc-EEEEeeC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPE  165 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~-Vtlv~~~  165 (414)
                      ++++++|+|+|-+|-.++..|...|.+ |+++.|.
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt   45 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT   45 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence            689999999999999999999999977 8998875

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=92.71  E-value=0.35  Score=42.43  Aligned_cols=79  Identities=19%  Similarity=0.312  Sum_probs=45.7

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc-------cccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCC
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG  207 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-------~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~  207 (414)
                      +|.|+|.|++|+-+|..|++.|.+|+.++..+....       ....+.+.+.+.+..+..++.+..+..          
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~----------   71 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIE----------   71 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHH----------
T ss_pred             EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhh----------
Confidence            689999999999999999999999999987643211       123456666666666555444432110          


Q ss_pred             cEEEEEeCCCcEEecCEEEEccCCc
Q 014997          208 RVAAVKLEDGSTIDADTIVIGIGAK  232 (414)
Q Consensus       208 ~~~~v~~~~g~~i~~D~vi~a~G~~  232 (414)
                               ...-.+|.+++|.+.-
T Consensus        72 ---------~ai~~adv~~I~VpTP   87 (185)
T PF03721_consen   72 ---------EAIKDADVVFICVPTP   87 (185)
T ss_dssp             ---------HHHHH-SEEEE----E
T ss_pred             ---------hhhhccceEEEecCCC
Confidence                     0023589999987743

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PLN02568 polyamine oxidase

Probab=92.63  E-value=0.18  Score=52.01  Aligned_cols=37  Identities=19%  Similarity=0.417  Sum_probs=32.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCC-----CcEEEEeeCCcc
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWK-----LDTTIIFPENHL  168 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g-----~~Vtlv~~~~~~  168 (414)
                      +..+|+|||+|..|+-+|..|.+.|     .+|+|+++++++
T Consensus         4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~   45 (539)
T PLN02568          4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRI   45 (539)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCc
Confidence            3468999999999999999999887     889999987655

>PLN02612 phytoene desaturase

Probab=92.53  E-value=0.19  Score=52.31  Aligned_cols=37  Identities=24%  Similarity=0.325  Sum_probs=33.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  168 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  168 (414)
                      ++++|+|||+|..|+-+|..|.+.|.+|+++++.+++
T Consensus        92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~  128 (567)
T PLN02612         92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVL  128 (567)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence            4578999999999999999999999999999987654

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.45  E-value=0.2  Score=47.28  Aligned_cols=37  Identities=24%  Similarity=0.368  Sum_probs=33.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ  170 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  170 (414)
                      ++|.|||+|..|..+|..++..|.+|+++++.+..+.
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~   42 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELAT   42 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHH
Confidence            5899999999999999999999999999998876554

>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase

Probab=92.41  E-value=0.3  Score=49.26  Aligned_cols=74  Identities=23%  Similarity=0.254  Sum_probs=53.3

Q ss_pred             eEEEECCChHHHH-HHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEE
Q 014997          135 KVVVVGGGYIGME-VAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK  213 (414)
Q Consensus       135 ~vvVvGgG~~g~e-~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~  213 (414)
                      ++.++|-|-+|+. +|..|.++|.+|++.+....       +     ..+.|++.|+++..+....             .
T Consensus         1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~-------~-----~~~~l~~~gi~~~~g~~~~-------------~   55 (448)
T TIGR01082         1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAEN-------A-----TTKRLEALGIPIYIGHSAE-------------N   55 (448)
T ss_pred             CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcc-------h-----HHHHHHHCcCEEeCCCCHH-------------H
Confidence            3679999999998 99999999999998875441       1     1234677798887542110             0


Q ss_pred             eCCCcEEecCEEEEccCCcCCChhh
Q 014997          214 LEDGSTIDADTIVIGIGAKPTVSPF  238 (414)
Q Consensus       214 ~~~g~~i~~D~vi~a~G~~p~~~~l  238 (414)
                      +     -.+|+||+++|..|+.+.+
T Consensus        56 ~-----~~~d~vV~spgi~~~~p~~   75 (448)
T TIGR01082        56 L-----DDADVVVVSAAIKDDNPEI   75 (448)
T ss_pred             C-----CCCCEEEECCCCCCCCHHH
Confidence            1     1389999999999876654

UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=92.41  E-value=1.2  Score=43.04  Aligned_cols=37  Identities=32%  Similarity=0.357  Sum_probs=32.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  168 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  168 (414)
                      ....++|||+|+-|.-.|...+++|.+...++.+..+
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~L   74 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTL   74 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCcc
Confidence            4578999999999999999999999999988876433

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=92.39  E-value=0.17  Score=52.71  Aligned_cols=55  Identities=22%  Similarity=0.349  Sum_probs=35.8

Q ss_pred             cCCCEEEcCCCCCCCCcEEEEccccccCCccCCcc-cccccHHHHHHHHHHHHHHHhc
Q 014997          246 SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRT-ARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       246 ~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~-~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                      ..|+|.+|.+++|++|++||+|+|+...  ..|.. ..-.+...|...|+.|++++..
T Consensus       356 ~~GGi~~d~~~~t~i~GLyAaGe~a~~G--~hGanrl~g~sl~~~~v~G~~ag~~aa~  411 (580)
T TIGR01176       356 TMGGIETDINCETRIKGLFAVGECASVG--LHGANRLGSNSLAELVVFGRRAGEAAAE  411 (580)
T ss_pred             cCCCeeECcCcccccCCeEeeecccccC--cCCCccccchhHHHHHHHHHHHHHHHHH
Confidence            3589999999999999999999997421  11110 0011344466667777766653

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>TIGR02734 crtI_fam phytoene desaturase

Probab=92.23  E-value=0.59  Score=47.80  Aligned_cols=57  Identities=28%  Similarity=0.418  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCc
Q 014997          175 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  232 (414)
Q Consensus       175 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~  232 (414)
                      ..+.+.+.+.+++.|++|++++.|++|..+ ++.+..|.+.+|+++.+|.||++.+..
T Consensus       219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~V~~~~g~~~~ad~VI~a~~~~  275 (502)
T TIGR02734       219 GALVAAMAKLAEDLGGELRLNAEVIRIETE-GGRATAVHLADGERLDADAVVSNADLH  275 (502)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCeEEEEEee-CCEEEEEEECCCCEEECCEEEECCcHH
Confidence            366777888889999999999999999854 456667888999899999999998763

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=92.20  E-value=0.33  Score=41.31  Aligned_cols=38  Identities=29%  Similarity=0.348  Sum_probs=29.4

Q ss_pred             hhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          129 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       129 ~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      .+-.+|+++|+|-|..|--+|..|+.+|.+|++.+..|
T Consensus        19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP   56 (162)
T PF00670_consen   19 LMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP   56 (162)
T ss_dssp             S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred             eeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence            34579999999999999999999999999999998754

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=92.19  E-value=0.17  Score=51.58  Aligned_cols=34  Identities=18%  Similarity=0.316  Sum_probs=0.0

Q ss_pred             eEEEECCChHHHHHHHHHHhC--CCcEEEEeeCCcc
Q 014997          135 KVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHL  168 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~  168 (414)
                      .|+|||||.+|+-+|..|+++  +.+|+|+++.+.+
T Consensus         7 DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~   42 (494)
T PRK05257          7 DVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGV   42 (494)
T ss_pred             eEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCch

>PRK07512 L-aspartate oxidase; Provisional

Probab=92.09  E-value=0.23  Score=50.99  Aligned_cols=53  Identities=30%  Similarity=0.464  Sum_probs=35.6

Q ss_pred             CCCEEEcCCCCCCCCcEEEEccccc--cCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997          247 VGGIQVDGQFRTRMPGIFAIGDVAA--FPLKMYDRTARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       247 ~g~i~vd~~~~t~~~~IyA~GD~a~--~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                      .|||.||.+.+|++|++||+|+|+.  ....  +... -.+...+...|+.+++++..
T Consensus       341 ~GGi~vd~~~~t~I~GLyAaGE~a~~G~hGa--nrl~-gnsl~~~~v~G~~ag~~aa~  395 (513)
T PRK07512        341 MGGIAVDADGRSSLPGLWAAGEVASTGLHGA--NRLA-SNSLLEAVVFAARAAEDIAG  395 (513)
T ss_pred             cCCEEECCCCccccCCEEecccccccCCCcc--cchH-HHHHHHHHHHHHHHHHHHHH
Confidence            4899999999999999999999973  2111  1111 11334466677777777653

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=92.08  E-value=0.46  Score=47.60  Aligned_cols=78  Identities=18%  Similarity=0.171  Sum_probs=52.9

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHH-hCCcEEEcCceEEEEEecCCCcEEEEE
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ-QNGVKFVKGASIKNLEAGSDGRVAAVK  213 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~-~~gv~i~~~~~v~~i~~~~~~~~~~v~  213 (414)
                      ++.|+|-|-+|+-+|..|.++|.+|+..+..+....    +.    ....++ ..|+++..+....           .+ 
T Consensus         1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~----~~----~~~~~~~~~gi~~~~g~~~~-----------~~-   60 (433)
T TIGR01087         1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEEL----EP----SMGQLRLNEGSVLHTGLHLE-----------DL-   60 (433)
T ss_pred             CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccc----hh----HHHHHhhccCcEEEecCchH-----------Hh-
Confidence            478999999999999999999999999886543111    11    011223 3588887653210           01 


Q ss_pred             eCCCcEEecCEEEEccCCcCCChhh
Q 014997          214 LEDGSTIDADTIVIGIGAKPTVSPF  238 (414)
Q Consensus       214 ~~~g~~i~~D~vi~a~G~~p~~~~l  238 (414)
                            -.+|+||+++|..++.+.+
T Consensus        61 ------~~~d~vv~sp~i~~~~p~~   79 (433)
T TIGR01087        61 ------NNADLVVKSPGIPPDHPLV   79 (433)
T ss_pred             ------ccCCEEEECCCCCCCCHHH
Confidence                  1379999999998876654

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=92.05  E-value=0.27  Score=41.81  Aligned_cols=37  Identities=19%  Similarity=0.452  Sum_probs=29.7

Q ss_pred             CeEEcCCcEEEEeCCCC--EEEeCCCcEEecCeEEEccCC
Q 014997           61 IEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGC   98 (414)
Q Consensus        61 i~~~~~~~V~~id~~~~--~V~~~~g~~~~yd~LviAtG~   98 (414)
                      |+++ ..+|+.|++...  .|.+.+|..+.||+||||||.
T Consensus       117 v~~~-~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen  117 VRHV-RAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH  155 (156)
T ss_pred             EEEE-eeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence            3344 368999987653  688899999999999999995

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=92.03  E-value=0.22  Score=48.56  Aligned_cols=38  Identities=26%  Similarity=0.286  Sum_probs=31.8

Q ss_pred             cCCCeEEEECCChHHHHHHHHHHhCCCcE--EEEeeCCcc
Q 014997          131 EKAKKVVVVGGGYIGMEVAAAAVGWKLDT--TIIFPENHL  168 (414)
Q Consensus       131 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~V--tlv~~~~~~  168 (414)
                      ..+.+|+|+|||.+|+-+|.+|++++.++  ++++..+|+
T Consensus         9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~Rv   48 (491)
T KOG1276|consen    9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRV   48 (491)
T ss_pred             eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcc
Confidence            35789999999999999999999998665  557877665

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=91.93  E-value=0.81  Score=44.20  Aligned_cols=31  Identities=26%  Similarity=0.356  Sum_probs=28.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEee
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP  164 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~  164 (414)
                      .+|.|||.|.+|.-+|..|++.|.+|+++.|
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r   33 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGR   33 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEec
Confidence            3699999999999999999999999999876

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=91.81  E-value=0.29  Score=48.46  Aligned_cols=41  Identities=22%  Similarity=0.413  Sum_probs=34.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCC-CcEEEEeeCCcccccc
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHLLQRL  172 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~~l~~~  172 (414)
                      ...+|+|||+|.+|+-+|..|.+.| .++++++..+|+-.|.
T Consensus        20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI   61 (498)
T KOG0685|consen   20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRI   61 (498)
T ss_pred             CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceE
Confidence            4568999999999999999999665 6789999888875543

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=91.72  E-value=0.25  Score=51.45  Aligned_cols=50  Identities=10%  Similarity=0.123  Sum_probs=34.7

Q ss_pred             CCHhHHHHcCCeEEcCCcEEEEeCCCCEEE---e---CCCc--EEecCeEEEccCCCC
Q 014997           51 QTPEWYKEKGIEMIYQDPVTSIDIEKQTLI---T---NSGK--LLKYGSLIVATGCTA  100 (414)
Q Consensus        51 ~~~~~~~~~~i~~~~~~~V~~id~~~~~V~---~---~~g~--~~~yd~LviAtG~~~  100 (414)
                      ...+.+.+.+|+++.++.++++-.+...|.   .   .+|+  .+.++.||||||...
T Consensus       141 ~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  198 (566)
T PRK06452        141 TLFERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG  198 (566)
T ss_pred             HHHHHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence            344455667999999999998765443222   1   2343  578899999999865

>PLN02676 polyamine oxidase

Probab=91.71  E-value=0.27  Score=50.13  Aligned_cols=38  Identities=21%  Similarity=0.343  Sum_probs=33.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCC-cEEEEeeCCccc
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHLL  169 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~l  169 (414)
                      ...+|+|||+|..|+-+|..|++.|. +|+++++++++.
T Consensus        25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~G   63 (487)
T PLN02676         25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIG   63 (487)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCC
Confidence            35689999999999999999999997 699999987653

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=91.52  E-value=0.37  Score=46.14  Aligned_cols=48  Identities=25%  Similarity=0.418  Sum_probs=38.6

Q ss_pred             HhHHHHcCCeEEcCCcEEEEeCCCCE---EEeCCCcEEecCeEEEccCCCCC
Q 014997           53 PEWYKEKGIEMIYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGCTAS  101 (414)
Q Consensus        53 ~~~~~~~~i~~~~~~~V~~id~~~~~---V~~~~g~~~~yd~LviAtG~~~~  101 (414)
                      .+.+.+.|++++.+++|+.+..++..   |.+++| .+.+|.+|+|+|....
T Consensus       144 ~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~  194 (337)
T TIGR02352       144 EKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAG  194 (337)
T ss_pred             HHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhh
Confidence            45567789999999999999876653   566666 6999999999998644

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=91.46  E-value=1.5  Score=43.27  Aligned_cols=53  Identities=15%  Similarity=0.337  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccC
Q 014997          177 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG  230 (414)
Q Consensus       177 ~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G  230 (414)
                      ++..+.+-+++.|-+|.+...|++|.-+ +|+...|.+.||+++.+.+|+.-.+
T Consensus       266 vs~aia~~~~~~GaeI~tka~Vq~Illd-~gka~GV~L~dG~ev~sk~VvSNAt  318 (561)
T KOG4254|consen  266 VSFAIAEGAKRAGAEIFTKATVQSILLD-SGKAVGVRLADGTEVRSKIVVSNAT  318 (561)
T ss_pred             HHHHHHHHHHhccceeeehhhhhheecc-CCeEEEEEecCCcEEEeeeeecCCc
Confidence            3344455558899999999999999865 4888999999999999977776544

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=91.31  E-value=0.24  Score=49.76  Aligned_cols=38  Identities=11%  Similarity=-0.079  Sum_probs=34.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR  171 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~  171 (414)
                      -.|+|||+|..++-+|..|++.|++|.++++++....+
T Consensus         5 ~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~   42 (443)
T PTZ00363          5 YDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGE   42 (443)
T ss_pred             ceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcc
Confidence            46999999999999999999999999999999876543

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=91.26  E-value=0.33  Score=50.85  Aligned_cols=51  Identities=22%  Similarity=0.290  Sum_probs=33.7

Q ss_pred             CCCEEEcCCCCCCCCcEEEEccccccCCc--cCCcccccccHHHHHHHHHHHHHHHh
Q 014997          247 VGGIQVDGQFRTRMPGIFAIGDVAAFPLK--MYDRTARVEHVDHARQSAQHCIKALL  301 (414)
Q Consensus       247 ~g~i~vd~~~~t~~~~IyA~GD~a~~~~~--~~~~~~~~~~~~~A~~~a~~aa~~i~  301 (414)
                      .|+|.+|.+.+|++|++||+|+|+.....  ..+.    .+...+...|+.|+.++.
T Consensus       370 ~gG~~~d~~~~t~i~gL~a~Ge~~~~~hg~nrl~~----~sl~~~~v~g~~Ag~~aa  422 (603)
T TIGR01811       370 MGGLWVDYDQMTNIPGLFAAGECDFSQHGANRLGA----NSLLSAIADGYFALPFTI  422 (603)
T ss_pred             CCCeeECCCCcccCCCEEECcccccCcCCCccchh----HHHHHHHHHHHHHHHHHH
Confidence            48999999999999999999999752211  0111    133345555666665554

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=91.17  E-value=0.79  Score=39.49  Aligned_cols=34  Identities=35%  Similarity=0.431  Sum_probs=30.4

Q ss_pred             CCCeEEEECCChH-HHHHHHHHHhCCCcEEEEeeC
Q 014997          132 KAKKVVVVGGGYI-GMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       132 ~~~~vvVvGgG~~-g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      .+++++|||+|.+ |..+|..|.++|.+|+++.|.
T Consensus        43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~   77 (168)
T cd01080          43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK   77 (168)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence            6899999999985 888999999999999988864

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PLN02815 L-aspartate oxidase

Probab=91.13  E-value=0.35  Score=50.54  Aligned_cols=51  Identities=22%  Similarity=0.301  Sum_probs=35.5

Q ss_pred             CCCEEEcCCCCCCCCcEEEEccccc--cCCc-cCCcccccccHHHHHHHHHHHHHHHh
Q 014997          247 VGGIQVDGQFRTRMPGIFAIGDVAA--FPLK-MYDRTARVEHVDHARQSAQHCIKALL  301 (414)
Q Consensus       247 ~g~i~vd~~~~t~~~~IyA~GD~a~--~~~~-~~~~~~~~~~~~~A~~~a~~aa~~i~  301 (414)
                      -|||.+|.+.+|++||+||+|+|+.  .... ..+    -.+...+...|+.|++++.
T Consensus       377 ~GGi~vD~~~~t~IpGLyAaGE~a~~G~hGanrl~----gnsl~e~lvfGr~Ag~~aa  430 (594)
T PLN02815        377 CGGVRTGLQGETNVQGLYAAGEVACTGLHGANRLA----SNSLLEALVFARRAVQPSI  430 (594)
T ss_pred             CCCeeECCCCceecCCEEecccccccCCCCCCcch----hhHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999974  2211 111    1134456667777777665

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=91.12  E-value=0.34  Score=50.43  Aligned_cols=49  Identities=12%  Similarity=0.178  Sum_probs=36.0

Q ss_pred             HhHHHHcCCeEEcCCcEEEEeCCCCEEE------eCCCc--EEecCeEEEccCCCCC
Q 014997           53 PEWYKEKGIEMIYQDPVTSIDIEKQTLI------TNSGK--LLKYGSLIVATGCTAS  101 (414)
Q Consensus        53 ~~~~~~~~i~~~~~~~V~~id~~~~~V~------~~~g~--~~~yd~LviAtG~~~~  101 (414)
                      .+.+++.||+++.++.|+++..++..|.      ..+|+  .+.++.||+|||....
T Consensus       136 ~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~  192 (566)
T TIGR01812       136 YEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGR  192 (566)
T ss_pred             HHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCcccC
Confidence            4456677999999999999875544332      24564  5889999999998643

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.12  E-value=0.47  Score=45.46  Aligned_cols=37  Identities=27%  Similarity=0.288  Sum_probs=33.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  169 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l  169 (414)
                      -++|.|||+|.+|..+|..++..|.+|+++++.+..+
T Consensus         7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~   43 (321)
T PRK07066          7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAE   43 (321)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHH
Confidence            3789999999999999999999999999999876444

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=91.08  E-value=0.79  Score=36.43  Aligned_cols=47  Identities=28%  Similarity=0.417  Sum_probs=35.7

Q ss_pred             EEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcC
Q 014997          136 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG  195 (414)
Q Consensus       136 vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~  195 (414)
                      ++|+|.|..|.+++..|.+.+.+|+++++.+.         .    .+.+++.|+.++.+
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~---------~----~~~~~~~~~~~i~g   47 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE---------R----VEELREEGVEVIYG   47 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH---------H----HHHHHHTTSEEEES
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH---------H----HHHHHhcccccccc
Confidence            68999999999999999997778999987642         1    24456777776654

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.96  E-value=0.71  Score=46.55  Aligned_cols=80  Identities=16%  Similarity=0.171  Sum_probs=54.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHh--CCcEEEcCceEEEEEecCCCcE
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ--NGVKFVKGASIKNLEAGSDGRV  209 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~--~gv~i~~~~~v~~i~~~~~~~~  209 (414)
                      ....++|+|-|-+|+-+|..|.++|.+|+..+..+.      . ...    +.|++  .|++++.+..        +.  
T Consensus         5 ~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~------~-~~~----~~l~~~~~g~~~~~~~~--------~~--   63 (448)
T PRK03803          5 SDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQ------P-PGL----DTLAREFPDVELRCGGF--------DC--   63 (448)
T ss_pred             cCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCC------c-hhH----HHHHhhcCCcEEEeCCC--------Ch--
Confidence            456799999999999999999999999999886541      1 111    22444  3777765310        00  


Q ss_pred             EEEEeCCCcEEecCEEEEccCCcCCChhhh
Q 014997          210 AAVKLEDGSTIDADTIVIGIGAKPTVSPFE  239 (414)
Q Consensus       210 ~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~  239 (414)
                             ...-.+|.||+++|..++.+.+.
T Consensus        64 -------~~~~~~d~vV~sp~i~~~~p~~~   86 (448)
T PRK03803         64 -------ELLVQASEIIISPGLALDTPALR   86 (448)
T ss_pred             -------HHhcCCCEEEECCCCCCCCHHHH
Confidence                   00124799999999988766543

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=90.94  E-value=0.27  Score=46.35  Aligned_cols=36  Identities=17%  Similarity=0.128  Sum_probs=29.8

Q ss_pred             eEEEECCChHHHHHHHHHHhCC-CcEEEEeeCCcccc
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHLLQ  170 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~~l~  170 (414)
                      .++|||+|..|+-+|..|++.+ .+|.|+++++....
T Consensus         2 D~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~   38 (296)
T PF00732_consen    2 DYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPP   38 (296)
T ss_dssp             EEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTT
T ss_pred             CEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCcc
Confidence            4799999999999999999987 68999999986544

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PRK06847 hypothetical protein; Provisional

Probab=90.85  E-value=0.61  Score=45.56  Aligned_cols=47  Identities=19%  Similarity=0.304  Sum_probs=38.4

Q ss_pred             hHHHHcCCeEEcCCcEEEEeCCCC--EEEeCCCcEEecCeEEEccCCCC
Q 014997           54 EWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA  100 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~~id~~~~--~V~~~~g~~~~yd~LviAtG~~~  100 (414)
                      +.+.+.|++++.+++|++++.+..  .|.+.+|+++.+|.||.|+|.++
T Consensus       115 ~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s  163 (375)
T PRK06847        115 DAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYS  163 (375)
T ss_pred             HHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCc
Confidence            334567999999999999986554  56777898999999999999865

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=90.84  E-value=1.9  Score=41.23  Aligned_cols=98  Identities=26%  Similarity=0.414  Sum_probs=63.5

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc--------------c------------------cc----ccC----
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL--------------L------------------QR----LFT----  174 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~--------------l------------------~~----~~~----  174 (414)
                      ..+|||||.-|+..|...+++|.++-+++..-++              |                  +.    .|+    
T Consensus        22 DylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fdW~~i  101 (478)
T KOG0405|consen   22 DYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFDWKVI  101 (478)
T ss_pred             ceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCCcHHHH
Confidence            4679999999999999999999999888765111              0                  00    000    


Q ss_pred             -----H---HHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCc--EEecCEEEEccCCcCCChh
Q 014997          175 -----P---SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVSP  237 (414)
Q Consensus       175 -----~---~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~~~~  237 (414)
                           .   .+....++.|.+.+|+++.+.  .++.  +++.+ .|+..||+  .+.+..+++|+|-+|..+-
T Consensus       102 k~krdayi~RLngIY~~~L~k~~V~~i~G~--a~f~--~~~~v-~V~~~d~~~~~Ytak~iLIAtGg~p~~Pn  169 (478)
T KOG0405|consen  102 KQKRDAYILRLNGIYKRNLAKAAVKLIEGR--ARFV--SPGEV-EVEVNDGTKIVYTAKHILIATGGRPIIPN  169 (478)
T ss_pred             HhhhhHHHHHHHHHHHhhccccceeEEeee--EEEc--CCCce-EEEecCCeeEEEecceEEEEeCCccCCCC
Confidence                 0   012223445566677777664  2332  23333 56777774  3789999999999987653

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=90.83  E-value=0.52  Score=51.30  Aligned_cols=76  Identities=13%  Similarity=0.126  Sum_probs=55.5

Q ss_pred             CCeEEEECCChHHHHH-HHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEE
Q 014997          133 AKKVVVVGGGYIGMEV-AAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  211 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~-A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~  211 (414)
                      -+++.|+|-|-+|+.. |..|.++|.+|++.+..+.       +.    . +.|++.|++++.+...        .    
T Consensus         4 ~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~-------~~----~-~~L~~~gi~~~~g~~~--------~----   59 (809)
T PRK14573          4 SLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEG-------KT----V-EKLKAKGARFFLGHQE--------E----   59 (809)
T ss_pred             cceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCC-------hH----H-HHHHHCCCEEeCCCCH--------H----
Confidence            3579999999999998 9999999999998775431       11    2 2367789998765311        0    


Q ss_pred             EEeCCCcEEecCEEEEccCCcCCChhh
Q 014997          212 VKLEDGSTIDADTIVIGIGAKPTVSPF  238 (414)
Q Consensus       212 v~~~~g~~i~~D~vi~a~G~~p~~~~l  238 (414)
                       .+     -.+|+||+++|..++.+.+
T Consensus        60 -~~-----~~~d~vV~SpgI~~~~p~~   80 (809)
T PRK14573         60 -HV-----PEDAVVVYSSSISKDNVEY   80 (809)
T ss_pred             -Hc-----CCCCEEEECCCcCCCCHHH
Confidence             01     1379999999999887654

>PRK04148 hypothetical protein; Provisional

Probab=90.76  E-value=0.92  Score=37.36  Aligned_cols=35  Identities=29%  Similarity=0.283  Sum_probs=30.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  167 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  167 (414)
                      +++++++||.| .|.++|..|++.|.+|+.++..+.
T Consensus        16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~   50 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK   50 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence            45789999999 999999999999999999986653

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=90.71  E-value=0.62  Score=45.79  Aligned_cols=56  Identities=20%  Similarity=0.228  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcC
Q 014997          175 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  233 (414)
Q Consensus       175 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p  233 (414)
                      ..+...+.+.+++ |++++.++.|.+++.++ +. ..+.+.+|..+.||.||+|+|.-.
T Consensus       135 ~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~-~~-~~v~t~~g~~~~a~~vV~a~G~~~  190 (381)
T TIGR03197       135 PQLCRALLAHAGI-RLTLHFNTEITSLERDG-EG-WQLLDANGEVIAASVVVLANGAQA  190 (381)
T ss_pred             HHHHHHHHhccCC-CcEEEeCCEEEEEEEcC-Ce-EEEEeCCCCEEEcCEEEEcCCccc
Confidence            4666777777778 99999999999998643 33 457788888799999999999754

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=90.70  E-value=0.48  Score=44.70  Aligned_cols=36  Identities=31%  Similarity=0.379  Sum_probs=32.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  169 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l  169 (414)
                      ++|.|||+|..|..+|..+++.|.+|+++++.+.-+
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l   39 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEAL   39 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHH
Confidence            679999999999999999999999999998876433

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=90.69  E-value=0.32  Score=50.88  Aligned_cols=52  Identities=21%  Similarity=0.211  Sum_probs=33.8

Q ss_pred             CCCEEEcCCCCCCCCcEEEEccccccCCccCCc-ccccccHHHHHHHHHHHHHHHh
Q 014997          247 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR-TARVEHVDHARQSAQHCIKALL  301 (414)
Q Consensus       247 ~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~-~~~~~~~~~A~~~a~~aa~~i~  301 (414)
                      .|||.||.+.+|++|++||+|+|+...   .|. +..-.+...|...|+.|++++.
T Consensus       355 ~GGi~vd~~~~t~I~GLyAaGE~~~g~---hGanrlggnsl~~~lv~Gr~Ag~~aa  407 (589)
T PRK08641        355 MGGLWVDYDQMTNIPGLFAAGECDYSY---HGANRLGANSLLSAIYGGMVAGPNAV  407 (589)
T ss_pred             CCCeEECCCCCeECCCEEECcccccCC---CCCCccchhhHHHHHHHHHHHHHHHH
Confidence            489999999999999999999997422   111 0111133445556666655554

>PRK06175 L-aspartate oxidase; Provisional

Probab=90.61  E-value=0.32  Score=48.85  Aligned_cols=54  Identities=22%  Similarity=0.272  Sum_probs=37.5

Q ss_pred             cCCCEEEcCCCCCCCCcEEEEccccc--cCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997          246 SVGGIQVDGQFRTRMPGIFAIGDVAA--FPLKMYDRTARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       246 ~~g~i~vd~~~~t~~~~IyA~GD~a~--~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                      ..|||.||.+.||++|++||+|.|+.  .....  . ..-.+...+...|+.|++++..
T Consensus       330 t~GGi~vd~~~~t~i~gLYAaGE~a~~g~hG~n--r-l~gnsl~~~lvfGr~Ag~~a~~  385 (433)
T PRK06175        330 FMGGIKVDLNSKTSMKNLYAFGEVSCTGVHGAN--R-LASNSLLEGLVFSKRGAEKINS  385 (433)
T ss_pred             ecCCEEECCCccccCCCeEecccccccCCCccc--c-chhHHHHHHHHHHHHHHHHHHH
Confidence            35899999999999999999999974  22111  1 1111344577778888888753

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=90.61  E-value=0.27  Score=46.37  Aligned_cols=33  Identities=18%  Similarity=0.204  Sum_probs=30.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      +.|-|||+|..|.|.|+.++++|+.|.+.+.++
T Consensus         4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp   36 (439)
T COG1206           4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRP   36 (439)
T ss_pred             CceEEEcccccccHHHHHHHHcCCcEEEEEccc
Confidence            568899999999999999999999999998764

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=90.54  E-value=0.32  Score=40.13  Aligned_cols=33  Identities=27%  Similarity=0.454  Sum_probs=28.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCC-cEEEEeeC
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPE  165 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~  165 (414)
                      .++|+|+|.|-+|.++|..|++.|. ++++++..
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d   35 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD   35 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence            4789999999999999999999997 58888754

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=90.53  E-value=0.43  Score=46.89  Aligned_cols=45  Identities=16%  Similarity=0.386  Sum_probs=36.6

Q ss_pred             HHHcCCeEEcCCcEEEEeCCCC--EEEeCCCcEEecCeEEEccCCCCC
Q 014997           56 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  101 (414)
Q Consensus        56 ~~~~~i~~~~~~~V~~id~~~~--~V~~~~g~~~~yd~LviAtG~~~~  101 (414)
                      +++ |++++.+++|++|+.++.  .|++.+|..+.+|+||+|+|....
T Consensus       145 ~~~-G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~~  191 (381)
T TIGR03197       145 AGI-RLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQAG  191 (381)
T ss_pred             cCC-CcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCcccc
Confidence            345 899999999999986554  467778877999999999998644

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=90.51  E-value=0.29  Score=51.04  Aligned_cols=49  Identities=20%  Similarity=0.195  Sum_probs=34.1

Q ss_pred             HhHHHH-cCCeEEcCCcEEEEeCCCCEE------EeCCCc--EEecCeEEEccCCCCC
Q 014997           53 PEWYKE-KGIEMIYQDPVTSIDIEKQTL------ITNSGK--LLKYGSLIVATGCTAS  101 (414)
Q Consensus        53 ~~~~~~-~~i~~~~~~~V~~id~~~~~V------~~~~g~--~~~yd~LviAtG~~~~  101 (414)
                      .+.+.+ .+|+++.++.|+++-.++..+      ...+|+  .+.++.||+|||....
T Consensus       144 ~~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~  201 (577)
T PRK06069        144 YSRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAGR  201 (577)
T ss_pred             HHHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhcc
Confidence            344444 589999999998885443332      234564  5789999999998653

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=90.42  E-value=0.48  Score=42.00  Aligned_cols=91  Identities=18%  Similarity=0.158  Sum_probs=57.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEE
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK  213 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~  213 (414)
                      +++.|+|.|.+|.-+|..|++.|.+|++-.++.        ++......+   ..+..+.-      ..           
T Consensus         2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~--------~~~~~a~a~---~l~~~i~~------~~-----------   53 (211)
T COG2085           2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRG--------PKALAAAAA---ALGPLITG------GS-----------   53 (211)
T ss_pred             cEEEEeccChHHHHHHHHHHhCCCeEEEecCCC--------hhHHHHHHH---hhcccccc------CC-----------
Confidence            468899999999999999999999999875543        122222222   22322111      00           


Q ss_pred             eCCCcEEecCEEEEccCCcCCChhhhhcCCcccCCCEEEcC
Q 014997          214 LEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDG  254 (414)
Q Consensus       214 ~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~g~i~vd~  254 (414)
                      ..+ -.-.+|.|++++.+....+.+++..-.. +|.|++|.
T Consensus        54 ~~d-A~~~aDVVvLAVP~~a~~~v~~~l~~~~-~~KIvID~   92 (211)
T COG2085          54 NED-AAALADVVVLAVPFEAIPDVLAELRDAL-GGKIVIDA   92 (211)
T ss_pred             hHH-HHhcCCEEEEeccHHHHHhHHHHHHHHh-CCeEEEec
Confidence            001 1234899999999987766666543212 26888886

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=90.40  E-value=0.37  Score=50.85  Aligned_cols=46  Identities=11%  Similarity=0.187  Sum_probs=33.4

Q ss_pred             HHHHcCCeEEcCCcEEEEeCCCCE---EEe---CCCc--EEecCeEEEccCCCC
Q 014997           55 WYKEKGIEMIYQDPVTSIDIEKQT---LIT---NSGK--LLKYGSLIVATGCTA  100 (414)
Q Consensus        55 ~~~~~~i~~~~~~~V~~id~~~~~---V~~---~~g~--~~~yd~LviAtG~~~  100 (414)
                      .+++.||+++.++.|+++-.++..   |..   .+|+  .+.++.||||||...
T Consensus       179 ~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g  232 (640)
T PRK07573        179 QIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGYG  232 (640)
T ss_pred             HHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCcc
Confidence            456789999999999988654332   222   2453  589999999999854

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=90.14  E-value=0.61  Score=43.99  Aligned_cols=36  Identities=31%  Similarity=0.376  Sum_probs=32.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  169 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l  169 (414)
                      ++|.|||+|..|..+|..|++.|.+|+++++.+..+
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~   37 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQL   37 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHH
Confidence            579999999999999999999999999998876543

>PRK07395 L-aspartate oxidase; Provisional

Probab=90.11  E-value=0.44  Score=49.41  Aligned_cols=54  Identities=24%  Similarity=0.350  Sum_probs=34.7

Q ss_pred             CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 014997          247 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  301 (414)
Q Consensus       247 ~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~  301 (414)
                      -|||.||.+.+|++|++||+|+|+.....-.++.. -.+...+..-|+.++.++.
T Consensus       347 ~GGi~vd~~~~t~I~GLyAaGE~a~~G~hGanRL~-gnsl~e~lvfG~~a~~~~~  400 (553)
T PRK07395        347 MGGVVTDLNNQTSIPGLYAVGETASTGVHGANRLA-SNSLLECLVFAAQLAQLEL  400 (553)
T ss_pred             CCCeeECCCCcccCCCEEECccccccCCCcccchH-HHHHHHHHHHHHHHHHHHH
Confidence            48999999999999999999999742110001111 1123345566777777664

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=90.03  E-value=0.39  Score=50.34  Aligned_cols=46  Identities=15%  Similarity=0.177  Sum_probs=31.2

Q ss_pred             HHHcCCeEEcCCcEEEEeCCC----CE--E---EeCCCc--EEecCeEEEccCCCCC
Q 014997           56 YKEKGIEMIYQDPVTSIDIEK----QT--L---ITNSGK--LLKYGSLIVATGCTAS  101 (414)
Q Consensus        56 ~~~~~i~~~~~~~V~~id~~~----~~--V---~~~~g~--~~~yd~LviAtG~~~~  101 (414)
                      +.+.+++++.++.|+++-.+.    +.  |   ...+|+  .+.++.+|+|||....
T Consensus       136 l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~  192 (614)
T TIGR02061       136 AKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAVN  192 (614)
T ss_pred             HHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCcccc
Confidence            445568888888888876542    21  1   223554  5789999999998643

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=90.02  E-value=0.39  Score=50.82  Aligned_cols=50  Identities=10%  Similarity=0.088  Sum_probs=35.4

Q ss_pred             CHhHHHHcCCeEEcCCcEEEEeCCCCE---EE---eCCCc--EEecCeEEEccCCCCC
Q 014997           52 TPEWYKEKGIEMIYQDPVTSIDIEKQT---LI---TNSGK--LLKYGSLIVATGCTAS  101 (414)
Q Consensus        52 ~~~~~~~~~i~~~~~~~V~~id~~~~~---V~---~~~g~--~~~yd~LviAtG~~~~  101 (414)
                      ..+.+.+.||+++.++.|+++-.++..   +.   +.+|+  .+.++.+|||||....
T Consensus       164 L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~  221 (657)
T PRK08626        164 VDNEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGYGR  221 (657)
T ss_pred             HHHHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccC
Confidence            345567789999999999988654432   22   23564  4678999999997643

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=89.91  E-value=1.5  Score=44.59  Aligned_cols=34  Identities=24%  Similarity=0.267  Sum_probs=30.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      +.+++|+|+|.+|+..+..+..+|.+|+++++++
T Consensus       164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~  197 (511)
T TIGR00561       164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP  197 (511)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4799999999999999999999999988887654

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=89.74  E-value=0.63  Score=46.10  Aligned_cols=36  Identities=22%  Similarity=0.180  Sum_probs=32.2

Q ss_pred             cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          131 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       131 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      ..+++|+|+|.|.+|.-+|..++.+|.+|+++++.+
T Consensus       200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~  235 (413)
T cd00401         200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP  235 (413)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            368999999999999999999999999998877654

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK06834 hypothetical protein; Provisional

Probab=89.56  E-value=0.97  Score=46.12  Aligned_cols=48  Identities=21%  Similarity=0.344  Sum_probs=38.7

Q ss_pred             hHHHHcCCeEEcCCcEEEEeCCCC--EEEeCCCcEEecCeEEEccCCCCC
Q 014997           54 EWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  101 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~~id~~~~--~V~~~~g~~~~yd~LviAtG~~~~  101 (414)
                      +.+++.|++++.+++|+++..+..  .|++.+|+++.+|+||.|.|.+..
T Consensus       108 ~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~  157 (488)
T PRK06834        108 EWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSL  157 (488)
T ss_pred             HHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCC
Confidence            345667999999999999987654  556677888999999999998753

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=89.55  E-value=0.64  Score=41.32  Aligned_cols=34  Identities=18%  Similarity=0.204  Sum_probs=30.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCC-cEEEEeeC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPE  165 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~  165 (414)
                      ..++|+|+|.|-+|.++|..|++.|. ++++++..
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            46889999999999999999999998 58988876

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=89.53  E-value=0.82  Score=42.87  Aligned_cols=95  Identities=21%  Similarity=0.191  Sum_probs=57.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEE
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV  212 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v  212 (414)
                      ..+|+|+|.|.+|--+|..|++.|..+.++.+...--          .. +.-.+.|+....       ..  +.     
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~----------~~-~~a~~lgv~d~~-------~~--~~-----   57 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAA----------TL-KAALELGVIDEL-------TV--AG-----   57 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHH----------HH-HHHhhcCccccc-------cc--ch-----
Confidence            4689999999999999999999999998887654210          11 111223432211       00  00     


Q ss_pred             EeCCCcEEecCEEEEccCCcCCChhhhhcCCcccCCCEEEcC
Q 014997          213 KLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDG  254 (414)
Q Consensus       213 ~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~g~i~vd~  254 (414)
                      ..  ...-.+|+||+|++...-.+.+++..-....|.+++|-
T Consensus        58 ~~--~~~~~aD~VivavPi~~~~~~l~~l~~~l~~g~iv~Dv   97 (279)
T COG0287          58 LA--EAAAEADLVIVAVPIEATEEVLKELAPHLKKGAIVTDV   97 (279)
T ss_pred             hh--hhcccCCEEEEeccHHHHHHHHHHhcccCCCCCEEEec
Confidence            00  01234899999999887666676653233345566553

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=89.46  E-value=2.3  Score=38.33  Aligned_cols=85  Identities=15%  Similarity=0.063  Sum_probs=49.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEE-EeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEE
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTI-IFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  210 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtl-v~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~  210 (414)
                      .+++++|.|-|..|..+|..|.++|.+++. .+....+...  +-++.+.++...+..++..+..  ...+.   +.   
T Consensus        22 ~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~--Gld~~~l~~~~~~~~~~~~~~~--~~~~~---~~---   91 (217)
T cd05211          22 EGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDP--GITTEELINYAVALGGSARVKV--QDYFP---GE---   91 (217)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECC--CCCHHHHHHHHHhhCCccccCc--ccccC---cc---
Confidence            679999999999999999999999876554 4444434332  3233333433333344433211  01111   11   


Q ss_pred             EEEeCCCcEEecCEEEEccCC
Q 014997          211 AVKLEDGSTIDADTIVIGIGA  231 (414)
Q Consensus       211 ~v~~~~g~~i~~D~vi~a~G~  231 (414)
                      .+     ...+||.++.|...
T Consensus        92 ~l-----~~~~~DVlipaA~~  107 (217)
T cd05211          92 AI-----LGLDVDIFAPCALG  107 (217)
T ss_pred             cc-----eeccccEEeecccc
Confidence            11     13589999988654

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.43  E-value=1  Score=46.08  Aligned_cols=35  Identities=17%  Similarity=0.171  Sum_probs=31.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      .++++.|+|-|-+|+-+|..|.++|.+|+..+...
T Consensus         6 ~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   40 (498)
T PRK02006          6 QGPMVLVLGLGESGLAMARWCARHGARLRVADTRE   40 (498)
T ss_pred             CCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence            36789999999999999999999999999887543

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=89.29  E-value=0.5  Score=49.28  Aligned_cols=35  Identities=29%  Similarity=0.355  Sum_probs=31.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  167 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  167 (414)
                      .-.|+|||+|..|+.+|..+++.|.+|.++++...
T Consensus         9 ~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~   43 (574)
T PRK12842          9 TCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPV   43 (574)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence            34799999999999999999999999999998753

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=89.17  E-value=0.61  Score=49.15  Aligned_cols=40  Identities=20%  Similarity=0.342  Sum_probs=29.2

Q ss_pred             CeEEcCCcEEEEeCCCCEE------EeCCCc--EEecCeEEEccCCCC
Q 014997           61 IEMIYQDPVTSIDIEKQTL------ITNSGK--LLKYGSLIVATGCTA  100 (414)
Q Consensus        61 i~~~~~~~V~~id~~~~~V------~~~~g~--~~~yd~LviAtG~~~  100 (414)
                      |+++.++.|+++-.++..|      ...+|+  .+.++.+|+|||...
T Consensus       166 v~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~  213 (626)
T PRK07803        166 IKVFAECTITELLKDGGRIAGAFGYWRESGRFVLFEAPAVVLATGGIG  213 (626)
T ss_pred             eEEEeCCEEEEEEEECCEEEEEEEEECCCCeEEEEEcCeEEECCCccc
Confidence            9999999999886433322      223554  589999999999843

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=89.09  E-value=0.7  Score=41.36  Aligned_cols=34  Identities=38%  Similarity=0.580  Sum_probs=31.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      .+++|+|||||-.|..=|..|.+.|.+|+++.+.
T Consensus        11 ~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~   44 (210)
T COG1648          11 EGKKVLVVGGGSVALRKARLLLKAGADVTVVSPE   44 (210)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCC
Confidence            6789999999999999999999999999998654

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=88.97  E-value=0.56  Score=44.61  Aligned_cols=89  Identities=16%  Similarity=0.275  Sum_probs=54.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEE
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK  213 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~  213 (414)
                      .+|.|+|+|.-|.-+|..|++.|.+|++..|++...         +.+...  +.+.+++++...-      +..  ..+
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~---------~~i~~~--~~N~~yLp~i~lp------~~l--~at   62 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIV---------AEINET--RENPKYLPGILLP------PNL--KAT   62 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHH---------HHHHhc--CcCccccCCccCC------ccc--ccc
Confidence            579999999999999999999999999988765332         222222  2344444432211      000  111


Q ss_pred             eCCCcEEe-cCEEEEccCCcCCChhhhhc
Q 014997          214 LEDGSTID-ADTIVIGIGAKPTVSPFERV  241 (414)
Q Consensus       214 ~~~g~~i~-~D~vi~a~G~~p~~~~l~~~  241 (414)
                      .+-.+.++ +|.|+++++.+.-.+.+++.
T Consensus        63 ~Dl~~a~~~ad~iv~avPs~~~r~v~~~l   91 (329)
T COG0240          63 TDLAEALDGADIIVIAVPSQALREVLRQL   91 (329)
T ss_pred             cCHHHHHhcCCEEEEECChHHHHHHHHHH
Confidence            11112344 89999998877554555543

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=88.92  E-value=0.79  Score=39.88  Aligned_cols=35  Identities=23%  Similarity=0.234  Sum_probs=31.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      .+++|.|+|-|.+|.++|..|..+|.+|..+.+..
T Consensus        35 ~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~   69 (178)
T PF02826_consen   35 RGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSP   69 (178)
T ss_dssp             TTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSC
T ss_pred             CCCEEEEEEEcCCcCeEeeeeecCCceeEEecccC
Confidence            57899999999999999999999999999998765

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=88.79  E-value=0.63  Score=42.19  Aligned_cols=33  Identities=21%  Similarity=0.369  Sum_probs=30.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      ++++|+|+|..|..+|..|.+.|.+|+++++.+
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~   33 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDE   33 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence            468999999999999999999999999998765

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=88.76  E-value=1.2  Score=44.74  Aligned_cols=79  Identities=20%  Similarity=0.240  Sum_probs=53.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEE
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  211 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~  211 (414)
                      .++++.|+|-|-+|+-.+..|++.|.+|+..+....      .+.     .+.+++ |+.+..+....       .    
T Consensus         5 ~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~------~~~-----~~~l~~-g~~~~~~~~~~-------~----   61 (438)
T PRK03806          5 QGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRIT------PPG-----LDKLPE-NVERHTGSLND-------E----   61 (438)
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCC------chh-----HHHHhc-CCEEEeCCCCH-------H----
Confidence            367899999999999999999999999999876541      111     122433 88776532110       0    


Q ss_pred             EEeCCCcEEecCEEEEccCCcCCChhhh
Q 014997          212 VKLEDGSTIDADTIVIGIGAKPTVSPFE  239 (414)
Q Consensus       212 v~~~~g~~i~~D~vi~a~G~~p~~~~l~  239 (414)
                            ..-++|++|+++|..++.+.+.
T Consensus        62 ------~~~~~d~vv~spgi~~~~~~~~   83 (438)
T PRK03806         62 ------WLLAADLIVASPGIALAHPSLS   83 (438)
T ss_pred             ------HhcCCCEEEECCCCCCCCHHHH
Confidence                  0123689999999988766543

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=88.74  E-value=0.59  Score=46.64  Aligned_cols=32  Identities=28%  Similarity=0.400  Sum_probs=29.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      ..++|||+|..|+.+|..+++.|.+|+++++.
T Consensus         3 ~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~   34 (422)
T PRK05329          3 FDVLVIGGGLAGLTAALAAAEAGKRVALVAKG   34 (422)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCcEEEEECC
Confidence            36899999999999999999999999999875

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=88.64  E-value=0.58  Score=44.62  Aligned_cols=35  Identities=17%  Similarity=0.190  Sum_probs=31.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  168 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  168 (414)
                      ++|.|||+|.+|..+|..|++.|.+|+++++.+..
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~   37 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAA   37 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHH
Confidence            47999999999999999999999999999887643

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=88.59  E-value=1.1  Score=43.52  Aligned_cols=50  Identities=18%  Similarity=0.413  Sum_probs=37.5

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc--------ccccccCHHHHHHHHHHH
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH--------LLQRLFTPSLAQRYEQLY  185 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~--------~l~~~~~~~~~~~~~~~l  185 (414)
                      ++.|+|.|+.|+-.|..|++.|++|+.++..+.        ..| ++.|.+.+.+++..
T Consensus         2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~P-I~EpgLe~ll~~~~   59 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISP-IYEPGLEELLKENL   59 (414)
T ss_pred             ceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCC-CcCccHHHHHHhcc
Confidence            689999999999999999999999999876532        122 45566655555443

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=88.46  E-value=1  Score=43.79  Aligned_cols=44  Identities=25%  Similarity=0.483  Sum_probs=35.4

Q ss_pred             HHHHc-CCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCC
Q 014997           55 WYKEK-GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS  101 (414)
Q Consensus        55 ~~~~~-~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~  101 (414)
                      .+.+. |++++.+++|++|+..  .|.+++|+ +.+|+||+|||....
T Consensus       154 ~~~~~~Gv~i~~~t~V~~i~~~--~v~t~~g~-i~a~~VV~A~G~~s~  198 (365)
T TIGR03364       154 YLAEQHGVEFHWNTAVTSVETG--TVRTSRGD-VHADQVFVCPGADFE  198 (365)
T ss_pred             HHHhcCCCEEEeCCeEEEEecC--eEEeCCCc-EEeCEEEECCCCChh
Confidence            34444 9999999999999754  78888775 789999999998643

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=88.36  E-value=7.4  Score=39.24  Aligned_cols=57  Identities=16%  Similarity=0.335  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHhCCcEEEcCceEEEEEecCC--C-cEEEEEe-CCCc--EE---ecCEEEEccCCcC
Q 014997          177 LAQRYEQLYQQNGVKFVKGASIKNLEAGSD--G-RVAAVKL-EDGS--TI---DADTIVIGIGAKP  233 (414)
Q Consensus       177 ~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~-~~~~v~~-~~g~--~i---~~D~vi~a~G~~p  233 (414)
                      +-.-+.+.|+++||+|.++++|+.+.-+.+  . .+..+.+ .+|.  .+   +-|+|++..|..-
T Consensus       209 ii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~GS~t  274 (500)
T PF06100_consen  209 IILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTNGSMT  274 (500)
T ss_pred             HHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEECCccc
Confidence            334466778999999999999999864322  1 2333333 3442  22   4688888888643

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=88.33  E-value=2.2  Score=43.43  Aligned_cols=58  Identities=21%  Similarity=0.305  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHhCCcEEEcCceEEEEEecC--CC--cEEEEEeCCC---cEEecCEEEEccCCc
Q 014997          175 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGS--DG--RVAAVKLEDG---STIDADTIVIGIGAK  232 (414)
Q Consensus       175 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~--~~--~~~~v~~~~g---~~i~~D~vi~a~G~~  232 (414)
                      .-+.+.+.+.++++|.+|++++.|++|..++  ++  .++.+.+.+|   +++++|.||++++..
T Consensus       219 ~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~  283 (474)
T TIGR02732       219 KYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVP  283 (474)
T ss_pred             hhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChH
Confidence            3345667788888999999999999997643  23  2566666544   569999999998853

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=88.31  E-value=1.4  Score=44.25  Aligned_cols=75  Identities=23%  Similarity=0.349  Sum_probs=52.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhC--CCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCc-eEEEEEecCCCcEE
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGA-SIKNLEAGSDGRVA  210 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~-~v~~i~~~~~~~~~  210 (414)
                      +++.|+|-|-+|+-.+..|.+.  |.+|++.+..+.      . ...    +.|++ |+++..+. ...           
T Consensus         8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~------~-~~~----~~l~~-g~~~~~g~~~~~-----------   64 (438)
T PRK04663          8 KNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRET------P-PGQ----EQLPE-DVELHSGGWNLE-----------   64 (438)
T ss_pred             ceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCC------c-hhH----HHhhc-CCEEEeCCCChH-----------
Confidence            7899999999999999999887  578998876542      1 111    22444 88887542 110           


Q ss_pred             EEEeCCCcEEecCEEEEccCCcCCChhh
Q 014997          211 AVKLEDGSTIDADTIVIGIGAKPTVSPF  238 (414)
Q Consensus       211 ~v~~~~g~~i~~D~vi~a~G~~p~~~~l  238 (414)
                      .+       -.+|+||+++|..|+.+.+
T Consensus        65 ~~-------~~~d~vV~SpgI~~~~p~~   85 (438)
T PRK04663         65 WL-------LEADLVVTNPGIALATPEI   85 (438)
T ss_pred             Hh-------ccCCEEEECCCCCCCCHHH
Confidence            01       2379999999998876654

>PLN02487 zeta-carotene desaturase

Probab=88.27  E-value=2.1  Score=44.46  Aligned_cols=60  Identities=17%  Similarity=0.213  Sum_probs=46.7

Q ss_pred             cCHHHHHHHHHHHHhCCcEEEcCceEEEEEecC--CC--cEEEEEe---CCCcEEecCEEEEccCCc
Q 014997          173 FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS--DG--RVAAVKL---EDGSTIDADTIVIGIGAK  232 (414)
Q Consensus       173 ~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~--~~--~~~~v~~---~~g~~i~~D~vi~a~G~~  232 (414)
                      +...+.+.+.+.++++|.+|++++.|++|..+.  ++  ++..+.+   .+++.+++|.||++++..
T Consensus       293 ~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~  359 (569)
T PLN02487        293 PDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVP  359 (569)
T ss_pred             chHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHH
Confidence            444577778899999999999999999998652  33  3667777   344579999999999864

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=88.24  E-value=2.3  Score=43.39  Aligned_cols=68  Identities=24%  Similarity=0.417  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEE---eCCC--cEEecCEEEEccCCcCCChhhhhcCCc
Q 014997          175 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK---LEDG--STIDADTIVIGIGAKPTVSPFERVGLN  244 (414)
Q Consensus       175 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~---~~~g--~~i~~D~vi~a~G~~p~~~~l~~~gl~  244 (414)
                      ..+...+.+.+++.|++++.+++|++++..+++.+ .+.   +.+|  .++.+|.||+|.|.... .+++.+|+.
T Consensus       178 ~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v-~v~~~~~~~g~~~~i~A~~VV~AAG~~s~-~La~~~Gi~  250 (483)
T TIGR01320       178 GALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSW-TVTVKNTRTGGKRTLNTRFVFVGAGGGAL-PLLQKSGIP  250 (483)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeE-EEEEeeccCCceEEEECCEEEECCCcchH-HHHHHcCCC
Confidence            46677777888889999999999999986544432 222   2334  36899999999998654 566666664

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=88.20  E-value=0.73  Score=43.45  Aligned_cols=35  Identities=20%  Similarity=0.214  Sum_probs=32.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      .+++++|+|.|.+|..+|..|+.+|.+|+++.|.+
T Consensus       150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~  184 (287)
T TIGR02853       150 HGSNVMVLGFGRTGMTIARTFSALGARVFVGARSS  184 (287)
T ss_pred             CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            47899999999999999999999999999988754

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=88.07  E-value=1  Score=42.58  Aligned_cols=37  Identities=32%  Similarity=0.390  Sum_probs=32.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  169 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l  169 (414)
                      -++|.|||+|.+|..+|..|+..|.+|+++++.+..+
T Consensus         4 ~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~   40 (295)
T PLN02545          4 IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAAL   40 (295)
T ss_pred             cCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHH
Confidence            3689999999999999999999999999998876433

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=88.03  E-value=1.3  Score=43.62  Aligned_cols=45  Identities=18%  Similarity=0.350  Sum_probs=37.3

Q ss_pred             HHHcCCeEEcCCcEEEEeCCCC--EEEeCCCcEEecCeEEEccCCCC
Q 014997           56 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA  100 (414)
Q Consensus        56 ~~~~~i~~~~~~~V~~id~~~~--~V~~~~g~~~~yd~LviAtG~~~  100 (414)
                      +++.|++++.+++|+++..+..  +|++++|+++.+|.||.|+|.+.
T Consensus       123 ~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S  169 (392)
T PRK08773        123 LHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAAS  169 (392)
T ss_pred             HHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCc
Confidence            4567999999999999876544  56677888899999999999875

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=87.93  E-value=0.4  Score=35.48  Aligned_cols=33  Identities=18%  Similarity=0.425  Sum_probs=26.8

Q ss_pred             CHhHHHHcCCeEEcCCcEEEEeCCCC--EEEeCCC
Q 014997           52 TPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSG   84 (414)
Q Consensus        52 ~~~~~~~~~i~~~~~~~V~~id~~~~--~V~~~~g   84 (414)
                      ..+++++.||++++++.+.+++.+..  +|+++||
T Consensus        46 ~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~~g   80 (80)
T PF00070_consen   46 LEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLEDG   80 (80)
T ss_dssp             HHHHHHHTTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred             HHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence            46788999999999999999987764  3777665

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=87.80  E-value=0.7  Score=48.23  Aligned_cols=50  Identities=14%  Similarity=0.191  Sum_probs=36.1

Q ss_pred             CHhHHHHcCCeEEcCCcEEEEeCCCCEE------EeCCCc--EEecCeEEEccCCCCC
Q 014997           52 TPEWYKEKGIEMIYQDPVTSIDIEKQTL------ITNSGK--LLKYGSLIVATGCTAS  101 (414)
Q Consensus        52 ~~~~~~~~~i~~~~~~~V~~id~~~~~V------~~~~g~--~~~yd~LviAtG~~~~  101 (414)
                      ..+.+++.||+++.++.|+++-.+...|      .+.+|+  .+.++.||+|||....
T Consensus       141 L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~  198 (575)
T PRK05945        141 LVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGR  198 (575)
T ss_pred             HHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcC
Confidence            4455667899999999999875543322      234564  5899999999998653

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=87.65  E-value=0.73  Score=43.51  Aligned_cols=35  Identities=29%  Similarity=0.361  Sum_probs=31.7

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  168 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  168 (414)
                      ++|.|||+|..|..+|..|+..|.+|+++++.+..
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~   38 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEI   38 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence            68999999999999999999999999999877643

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=87.64  E-value=1.4  Score=43.54  Aligned_cols=48  Identities=21%  Similarity=0.347  Sum_probs=38.5

Q ss_pred             hHHHHcCCeEEcCCcEEEEeCCCC--EEEeCCCcEEecCeEEEccCCCCC
Q 014997           54 EWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  101 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~~id~~~~--~V~~~~g~~~~yd~LviAtG~~~~  101 (414)
                      +.+.+.|++++.+++|+.++.+..  .|++.+|+.+.+|.||.|+|.+..
T Consensus       119 ~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S~  168 (403)
T PRK07333        119 KRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARSK  168 (403)
T ss_pred             HHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCChH
Confidence            334567999999999999976654  466778888999999999998643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	414
3lxd_A	415	Crystal Structure Of Ferredoxin Reductase Arr From		1e-33
3fg2_P	404	Crystal Structure Of Ferredoxin Reductase For The C		2e-33
1q1r_A	431	Crystal Structure Of Putidaredoxin Reductase From P		7e-32
3lb8_A	436	Crystal Structure Of The Covalent Putidaredoxin Red		7e-32
3ef6_A	410	Crystal Structure Of Toluene 2,3-Dioxygenase Reduct		4e-24
2gr3_A	408	Crystal Structure Of Ferredoxin Reductase, Bpha4 (O		3e-22
1d7y_A	408	Crystal Structure Of Nadh-Dependent Ferredoxin Redu		4e-22
4fdc_B	514	Crystal Structure Of The E493v Mutant Of Human Apop		3e-18
3gd4_A	511	Crystal Structure Of The Reduced, Nad-Bound Form Of		4e-18
1gv4_A	528	Murine Apoptosis-Inducing Factor (Aif) Length = 528		4e-18
3gd3_A	535	Crystal Structure Of A Naturally Folded Murine Apop		5e-18
1m6i_A	493	Crystal Structure Of Apoptosis Inducing Factor (Aif		1e-17
3iwa_A	472	Crystal Structure Of A Fad-Dependent Pyridine Nucle		8e-17
1xhc_A	367	Nadh Oxidase /nitrite Reductase From Pyrococcus Fur		8e-12
2cdu_A	452	The Crystal Structure Of Water-Forming Nad(P)h Oxid		4e-11
3cgc_A	480	Pyridine Nucleotide Complexes With Bacillus Anthrac		2e-10
1ebd_A	455	Dihydrolipoamide Dehydrogenase Complexed With The B		3e-10
2eq7_A	455	Crystal Structure Of Lipoamide Dehydrogenase From T		1e-09
3cgb_A	480	Pyridine Nucleotide Complexes With Bacillus Anthrac		3e-09
4gcm_A	312	Crystal Structure Of A Thioredoxine Reductase (Trxb		2e-08
3ntd_A	565	Structure Of The Shewanella Loihica Pv-4 Nadh-Depen		4e-08
1nhr_A	447	An L40c Mutation Converts The Cysteine-Sulfenic Aci		5e-08
1nhq_A	447	Crystallographic Analyses Of Nadh Peroxidase Cys42a		6e-08
1joa_A	447	Nadh Peroxidase With Cysteine-Sulfenic Acid Length		6e-08
1nhs_A	447	An L40c Mutation Converts The Cysteine-Sulfenic Aci		6e-08
1nhp_A	447	Crystallographic Analyses Of Nadh Peroxidase Cys42a		6e-08
2woi_A	495	Trypanothione Reductase From Trypanosoma Brucei Len		8e-08
2wba_A	492	Properties Of Trypanothione Reductase From T. Bruce		9e-08
4dna_A	463	Crystal Structure Of Putative Glutathione Reductase		9e-08
1h6v_A	499	Mammalian Thioredoxin Reductase Length = 499		1e-07
3ean_A	499	Crystal Structure Of Recombinant Rat Selenoprotein		1e-07
2v3a_A	384	Crystal Structure Of Rubredoxin Reductase From Pseu		2e-07
2bc1_A	490	Structural Analysis Of Streptococcus Pyogenes Nadh		3e-07
2bc0_A	490	Structural Analysis Of Streptococcus Pyogenes Nadh		3e-07
2hqm_A	479	Crystal Structure Of Glutathione Reductase Glr1 Fro		4e-07
1f8w_A	447	Crystal Structure Of Nadh Peroxidase Mutant: R303m		4e-07
2zz0_A	513	Crystal Structure Of Human Thioredoxin Reductase I		4e-07
2j3n_A	519	X-Ray Structure Of Human Thioredoxin Reductase 1 Le		5e-07
3qfa_A	519	Crystal Structure Of The Human Thioredoxin Reductas		5e-07
2cfy_A	521	Crystal Structure Of Human Thioredoxin Reductase 1		6e-07
3rnm_A	495	The Crystal Structure Of The Subunit Binding Of Hum		8e-07
1zy8_A	474	The Crystal Structure Of Dihydrolipoamide Dehydroge		8e-07
1zmc_A	474	Crystal Structure Of Human Dihydrolipoamide Dehydro		8e-07
3nta_A	574	Structure Of The Shewanella Loihica Pv-4 Nadh-Depen		8e-07
3nt6_A	574	Structure Of The Shewanella Loihica Pv-4 Nadh-Depen		9e-07
1nda_A	491	The Structure Of Trypanosoma Cruzi Trypanothione Re		1e-06
1bzl_A	486	Crystal Structure Of Trypanosoma Cruzi Trypanothion		1e-06
1gxf_A	492	Crystal Structure Of Trypanosoma Cruzi Trypanothion		1e-06
1aog_A	485	Trypanosoma Cruzi Trypanothione Reductase (Oxidized		1e-06
1ger_A	450	The Structure Of Glutathione Reductase From Escheri		2e-06
4eqs_A	437	Crystal Structure Of The Y419f Mutant Of Staphyloco		1e-05
4eqr_A	437	Crystal Structure Of The Y361f Mutant Of Staphyloco		1e-05
4eqw_A	437	Crystal Structure Of The Y361f, Y419f Mutant Of Sta		1e-05
4emw_A	436	Crystal Structure Of Staphylococcus Aureus Bound Wi		1e-05
4em3_A	437	Crystal Structure Of Staphylococcus Aureus Bound Wi		1e-05
1yqz_A	438	Structure Of Coenzyme A-Disulfide Reductase From St		1e-05
4eqx_A	437	Crystal Structure Of The C43s Mutant Of Staphylococ		1e-05
3klj_A	385	Crystal Structure Of Nadh:rubredoxin Oxidoreductase		1e-05
1dxl_A	470	Dihydrolipoamide Dehydrogenase Of Glycine Decarboxy		1e-05
3icr_A	588	Crystal Structure Of Oxidized Bacillus Anthracis Co		2e-05
3dgz_A	488	Crystal Structure Of Mouse Mitochondrial Thioredoxi		2e-05
1zdl_A	517	Crystal Structure Of Mouse Thioredoxin Reductase Ty		2e-05
3ab1_A	360	Crystal Structure Of Ferredoxin Nadp+ Oxidoreductas		7e-05
1onf_A	500	Crystal Structure Of Plasmodium Falciparum Glutathi		9e-05
1ges_A	450	Anatomy Of An Engineered Nad-Binding Site Length =		1e-04
1lvl_A	458	The Refined Structure Of Pseudomonas Putida Lipoami		1e-04
3oc4_A	452	Crystal Structure Of A Pyridine Nucleotide-Disulfid		1e-04
3urh_A	491	Crystal Structure Of A Dihydrolipoamide Dehydrogena		1e-04
3l8k_A	466	Crystal Structure Of A Dihydrolipoyl Dehydrogenase		1e-04
2r9z_A	463	Glutathione Amide Reductase From Chromatium Gracile		7e-04
4b1b_A	542	Crystal Structure Of Plasmodium Falciparum Oxidised		8e-04

>pdb|3LXD|A Chain A, Crystal Structure Of Ferredoxin Reductase Arr From Novosphingobium Aromaticivorans Length = 415

Iteration: 1
 Score =  140 bits (353), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 105/356 (29%), Positives = 170/356 (47%), Gaps = 27/356 (7%)
Query: 3   DGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF-HTCVGSGGERQTPEWYKEKGI 61
           +GR+ ++ +E   PYERP L+K YL       AR   F   C+      +  +++++K +
Sbjct: 34  EGRVLVIGREPEIPYERPPLSKEYL-------AREKTFERICI------RPAQFWEDKAV 80
Query: 62  EMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVA 121
           EM     V S+D    T+    G  ++YG LI ATG    R    +G  L GVH +R   
Sbjct: 81  EMKLGAEVVSLDPAAHTVKLGDGSAIEYGKLIWATGGDPRRL-SCVGADLAGVHAVRTKE 139
Query: 122 DADALISSLEK-AKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR 180
           DAD L++ L+  AK        YIG+E AA    + ++ T++     +L R+   +L++ 
Sbjct: 140 DADRLMAELDAGAKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEF 199
Query: 181 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER 240
           Y+  ++ +GV    GA++  +E G   +V  V+++DGS I AD +++GIG  P V     
Sbjct: 200 YQAEHRAHGVDLRTGAAMDCIE-GDGTKVTGVRMQDGSVIPADIVIVGIGIVPCVGALIS 258
Query: 241 VGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA-RVEHVDHARQSAQHCIKA 299
            G +    G+ VD   RT +  ++AIGD AA      D    R+E V +A   A    K 
Sbjct: 259 AGASGG-NGVDVDEFCRTSLTDVYAIGDCAAHANDFADGAVIRLESVQNANDMATAAAKD 317
Query: 300 LLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWI 355
           +  A    Y   P+F+S  ++ +        Q  G + G    +   DP   +F +
Sbjct: 318 ICGAPV-PYKATPWFWSNQYDLK-------LQTVGLSTGHDNAVLRGDPATRSFSV 365

>pdb|3FG2|P Chain P, Crystal Structure Of Ferredoxin Reductase For The Cyp199a2 System From Rhodopseudomonas Palustris Length = 404

Iteration: 1
 Score =  140 bits (352), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/318 (30%), Positives = 155/318 (48%), Gaps = 27/318 (8%)
Query: 4   GRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQT----PE-WYKE 58
           GR+ +++ E + PY+RP L+K YL                  SGG+  +    PE ++++
Sbjct: 27  GRIALINDEKHLPYQRPPLSKAYL-----------------KSGGDPNSLMFRPEKFFQD 69
Query: 59  KGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIR 118
           + IE+I  D + SID E + L+  SG  ++YG L++ATG   +R  +     LP V Y+R
Sbjct: 70  QAIELI-SDRMVSIDREGRKLLLASGTAIEYGHLVLATGAR-NRMLDVPNASLPDVLYLR 127
Query: 119 DVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLA 178
            + +++ L   +   K        +IG+E AA A    L+  ++     ++ R+ TP ++
Sbjct: 128 TLDESEVLRQRMPDKKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARVVTPEIS 187
Query: 179 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF 238
             +   +   G++   G     + A  D RV  V L DG+T+  D +V+G+G  P V   
Sbjct: 188 SYFHDRHSGAGIRMHYGVRATEIAAEGD-RVTGVVLSDGNTLPCDLVVVGVGVIPNVE-I 245
Query: 239 ERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIK 298
                  +  GI VD Q  T  P I AIGD A F    +  T RVE V +A   A+ C+ 
Sbjct: 246 AAAAGLPTAAGIIVDQQLLTSDPHISAIGDCALFESVRFGETMRVESVQNATDQAR-CVA 304
Query: 299 ALLSAQTHTYDYLPYFYS 316
           A L+     YD  P+F+S
Sbjct: 305 ARLTGDAKPYDGYPWFWS 322

>pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From Pseudomonas Putida Length = 431

Iteration: 1
 Score =  134 bits (338), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 92/321 (28%), Positives = 154/321 (47%), Gaps = 17/321 (5%)
Query: 3   DGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIE 62
           +G + +V      P+  P L+K YL       A     +         +TP+ Y  + I+
Sbjct: 29  EGNIRLVGDATVIPHHLPPLSKAYL----AGKATAESLYL--------RTPDAYAAQNIQ 76
Query: 63  MIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIG--GYLPGVHYIRDV 120
           ++    VT+I+ ++Q +I + G+ L Y  L++ATG      P   G  G      Y+R +
Sbjct: 77  LLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPRPLPVASGAVGKANNFRYLRTL 136
Query: 121 ADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR 180
            DA+ +   L    +       YIG+EVAA A+   +  T++     +L+R+  P ++  
Sbjct: 137 EDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAF 196
Query: 181 YEQLYQQNGVKFVKGASIKNLEAGSD-GRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE 239
           YE L+++ GV    G  +   E  +D  +V AV  EDG+ + AD ++ GIG  P      
Sbjct: 197 YEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCELAS 256
Query: 240 RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKA 299
             GL     GI ++   +T  P I A+GD A F  ++YDR  R+E V +A + A+  I A
Sbjct: 257 AAGLQVD-NGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARK-IAA 314
Query: 300 LLSAQTHTYDYLPYFYSRVFE 320
           +L  +    +  P+F+S  +E
Sbjct: 315 ILCGKVPRDEAAPWFWSDQYE 335

>pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase- Putidaredoxin Complex Length = 436

Iteration: 1
 Score =  134 bits (338), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 92/321 (28%), Positives = 154/321 (47%), Gaps = 17/321 (5%)
Query: 3   DGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIE 62
           +G + +V      P+  P L+K YL       A     +         +TP+ Y  + I+
Sbjct: 28  EGNIRLVGDATVIPHHLPPLSKAYL----AGKATAESLYL--------RTPDAYAAQNIQ 75
Query: 63  MIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIG--GYLPGVHYIRDV 120
           ++    VT+I+ ++Q +I + G+ L Y  L++ATG      P   G  G      Y+R +
Sbjct: 76  LLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPRPLPVASGAVGKANNFRYLRTL 135
Query: 121 ADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR 180
            DA+ +   L    +       YIG+EVAA A+   +  T++     +L+R+  P ++  
Sbjct: 136 EDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAF 195
Query: 181 YEQLYQQNGVKFVKGASIKNLEAGSD-GRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE 239
           YE L+++ GV    G  +   E  +D  +V AV  EDG+ + AD ++ GIG  P      
Sbjct: 196 YEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCELAS 255
Query: 240 RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKA 299
             GL     GI ++   +T  P I A+GD A F  ++YDR  R+E V +A + A+  I A
Sbjct: 256 AAGLQVD-NGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARK-IAA 313
Query: 300 LLSAQTHTYDYLPYFYSRVFE 320
           +L  +    +  P+F+S  +E
Sbjct: 314 ILCGKVPRDEAAPWFWSDQYE 334

>pdb|3EF6|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase Reductase Length = 410

Iteration: 1
 Score =  109 bits (272), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 128/277 (46%), Gaps = 17/277 (6%)
Query: 3   DGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIE 62
           +GR+ ++  E + PY+RP+L+K  L    ++P  L                +WY E  I+
Sbjct: 27  EGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPILA-------------EADWYGEARID 73
Query: 63  MIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVAD 122
           M+    VT++D++ +T+  + G  L   ++++ATG  A R     G  LPGV  +R   D
Sbjct: 74  MLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRA-RTMALPGSQLPGVVTLRTYGD 132
Query: 123 ADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 182
              L  S   A +        IG EVA  A    L  TI+   + LL R+    +     
Sbjct: 133 VQVLRDSWTSATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRVLGRRIGAWLR 192
Query: 183 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG 242
            L  + GV+   G  +       +G++  V   DG +  AD+ +I +GA+P      + G
Sbjct: 193 GLLTELGVQVELGTGVVGFSG--EGQLEQVMASDGRSFVADSALICVGAEPADQLARQAG 250
Query: 243 LNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR 279
           L    G I VD    T   G+FA+GDVA++PL+   R
Sbjct: 251 LACDRGVI-VDHCGATLAKGVFAVGDVASWPLRAGGR 286

>pdb|2GR3|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized Form) Length = 408

Iteration: 1
 Score =  102 bits (255), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 137/314 (43%), Gaps = 26/314 (8%)
Query: 4   GRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEM 63
           G + +V  EA  PY+RP L+K ++   D +  RL     C      ++ PE      +E 
Sbjct: 33  GLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRL----DC------KRAPE------VEW 76
Query: 64  IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA 123
           +      S D +  T+  + G+ L YG+L++ATG      P   G  +P VH +R + DA
Sbjct: 77  LLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPTLQGATMP-VHTLRTLEDA 135
Query: 124 DALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQ 183
             + + L    +        IG+E+AA A    +  +++  +  L+ R    +LA    +
Sbjct: 136 RRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVAR 195
Query: 184 LYQQNGVKFVKGASIKNLEAGSDGRV-AAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG 242
            +   GV           E    G V   V L+DG+ I AD +V+GIG     +     G
Sbjct: 196 YHAAQGVDL-------RFERSVTGSVDGVVLLDDGTRIAADMVVVGIGVLANDALARAAG 248
Query: 243 LNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 302
           L     GI VD   RT  P ++A+GDV      +  R  R+E   +A+       + L+ 
Sbjct: 249 LACD-DGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVD 307
Query: 303 AQTHTYDYLPYFYS 316
                Y  LP+++S
Sbjct: 308 PTAPGYAELPWYFS 321

>pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Ferredoxin Reductase, Bpha4 Length = 408

Iteration: 1
 Score =  102 bits (254), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 137/314 (43%), Gaps = 26/314 (8%)
Query: 4   GRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEM 63
           G + +V  EA  PY+RP L+K ++   D +  RL     C      ++ PE      +E 
Sbjct: 33  GLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRL----DC------KRAPE------VEW 76
Query: 64  IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA 123
           +      S D +  T+  + G+ L YG+L++ATG      P   G  +P VH +R + DA
Sbjct: 77  LLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPTLQGATMP-VHTLRTLEDA 135
Query: 124 DALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQ 183
             + + L    +        IG+E+AA A    +  +++  +  L+ R    +LA    +
Sbjct: 136 RRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVAR 195
Query: 184 LYQQNGVKFVKGASIKNLEAGSDGRV-AAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG 242
            +   GV           E    G V   V L+DG+ I AD +V+GIG     +     G
Sbjct: 196 YHAAQGVDL-------RFERSVTGSVDGVVLLDDGTRIAADMVVVGIGVLANDALARAAG 248
Query: 243 LNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 302
           L     GI VD   RT  P ++A+GDV      +  R  R+E   +A+       + L+ 
Sbjct: 249 LACD-DGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVD 307
Query: 303 AQTHTYDYLPYFYS 316
                Y  LP+++S
Sbjct: 308 PTAPGYAELPWYWS 321

>pdb|4FDC|B Chain B, Crystal Structure Of The E493v Mutant Of Human Apoptosis Inducing Factor (Aif) Length = 514

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 163/372 (43%), Gaps = 49/372 (13%)
Query: 5   RLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER----QTPEWY---- 56
           R+ IVS++   PY RP L+K   F  D    +   F     +G ER    Q P +Y    
Sbjct: 56  RVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQW--NGKERSIYFQPPSFYVSAQ 113
Query: 57  -----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGG 109
                +  G+ ++    V  +D+    +  N G  + Y   ++ATG T       ++ G 
Sbjct: 114 DLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGA 173
Query: 110 YLPG-VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWK---LDTTII--F 163
            +       R + D  +L     + K        ++G E+A A +G K   L T +I  F
Sbjct: 174 EVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACA-LGRKARALGTEVIQLF 232
Query: 164 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 223
           PE   + ++    L+    +  ++ GVK +  A ++++   S G++  +KL+DG  ++ D
Sbjct: 233 PEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGV-SSGKLL-IKLKDGRKVETD 290
Query: 224 TIVIGIGAKPTVSPFERVGL--NSSVGGIQVDGQFRTRMPGIFAIGDVAAF-PLKMYDRT 280
            IV  +G +P V   +  GL  +S  GG +V+ + + R   I+  GD A F  +K+  R 
Sbjct: 291 HIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQAR-SNIWVAGDAACFYDIKLGRR- 348
Query: 281 ARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGET 340
            RVEH DHA       +   L+ +  T    PY++  +F          W   G +VG  
Sbjct: 349 -RVEHHDHA------VVSGRLAGENMTGAAKPYWHQSMF----------WSDLGPDVG-Y 390
Query: 341 IEIGNFDPKIAT 352
           + IG  D  + T
Sbjct: 391 VAIGLVDSSLPT 402

>pdb|3GD4|A Chain A, Crystal Structure Of The Reduced, Nad-Bound Form Of Murine Apoptosis Inducing Factor Length = 511

Iteration: 1
 Score = 89.0 bits (219), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 154/358 (43%), Gaps = 48/358 (13%)
Query: 5   RLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER----QTPEWY---- 56
           R+ IVS++   PY RP L+K   F  D    +   F     +G ER    Q P +Y    
Sbjct: 56  RVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLQFRQW--NGKERSIYFQPPSFYVSAQ 113
Query: 57  -----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGG 109
                +  G+ ++    V  +D+    +  N G  + +   ++ATG T       ++ G 
Sbjct: 114 DLPNIENGGVAVLTGKKVVHLDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRAGA 173
Query: 110 YLPG-VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWK-----LDTTIIF 163
            +       R + D  AL     + K        ++G E+A A +G K     ++   +F
Sbjct: 174 EVKSRTTLFRKIGDFRALEKISREVKSITVIGGGFLGSELACA-LGRKSQASGIEVIQLF 232
Query: 164 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 223
           PE   + ++    L+    +  ++ GVK +  A ++++  G  G    +KL+DG  ++ D
Sbjct: 233 PEKGNMGKILPQYLSNWTMEKVKREGVKVMPNAIVQSV--GVSGGRLLIKLKDGRKVETD 290
Query: 224 TIVIGIGAKPTVSPFERVGL--NSSVGGIQVDGQFRTRMPGIFAIGDVAAF-PLKMYDRT 280
            IV  +G +P V   +  GL  +S  GG +V+ + + R   I+  GD A F  +K+  R 
Sbjct: 291 HIVTAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQAR-SNIWVAGDAACFYDIKLGRR- 348
Query: 281 ARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG 338
            RVEH DHA       +   L+ +  T    PY++  +F          W   G +VG
Sbjct: 349 -RVEHHDHA------VVSGRLAGENMTGAAKPYWHQSMF----------WSDLGPDVG 389

>pdb|1GV4|A Chain A, Murine Apoptosis-Inducing Factor (Aif) Length = 528

Iteration: 1
 Score = 89.0 bits (219), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 154/358 (43%), Gaps = 48/358 (13%)
Query: 5   RLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER----QTPEWY---- 56
           R+ IVS++   PY RP L+K   F  D    +   F     +G ER    Q P +Y    
Sbjct: 75  RVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLQFRQW--NGKERSIYFQPPSFYVSAQ 132
Query: 57  -----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGG 109
                +  G+ ++    V  +D+    +  N G  + +   ++ATG T       ++ G 
Sbjct: 133 DLPNIENGGVAVLTGKKVVHLDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRAGA 192
Query: 110 YLPG-VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWK-----LDTTIIF 163
            +       R + D  AL     + K        ++G E+A A +G K     ++   +F
Sbjct: 193 EVKSRTTLFRKIGDFRALEKISREVKSITVIGGGFLGSELACA-LGRKSQASGIEVIQLF 251
Query: 164 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 223
           PE   + ++    L+    +  ++ GVK +  A ++++  G  G    +KL+DG  ++ D
Sbjct: 252 PEKGNMGKILPQYLSNWTMEKVKREGVKVMPNAIVQSV--GVSGGRLLIKLKDGRKVETD 309
Query: 224 TIVIGIGAKPTVSPFERVGL--NSSVGGIQVDGQFRTRMPGIFAIGDVAAF-PLKMYDRT 280
            IV  +G +P V   +  GL  +S  GG +V+ + + R   I+  GD A F  +K+  R 
Sbjct: 310 HIVTAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQAR-SNIWVAGDAACFYDIKLGRR- 367
Query: 281 ARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG 338
            RVEH DHA       +   L+ +  T    PY++  +F          W   G +VG
Sbjct: 368 -RVEHHDHA------VVSGRLAGENMTGAAKPYWHQSMF----------WSDLGPDVG 408

>pdb|3GD3|A Chain A, Crystal Structure Of A Naturally Folded Murine Apoptosis Inducing Factor Length = 535

Iteration: 1
 Score = 89.0 bits (219), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 154/358 (43%), Gaps = 48/358 (13%)
Query: 5   RLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER----QTPEWY---- 56
           R+ IVS++   PY RP L+K   F  D    +   F     +G ER    Q P +Y    
Sbjct: 80  RVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLQFRQW--NGKERSIYFQPPSFYVSAQ 137
Query: 57  -----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGG 109
                +  G+ ++    V  +D+    +  N G  + +   ++ATG T       ++ G 
Sbjct: 138 DLPNIENGGVAVLTGKKVVHLDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRAGA 197
Query: 110 YLPG-VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWK-----LDTTIIF 163
            +       R + D  AL     + K        ++G E+A A +G K     ++   +F
Sbjct: 198 EVKSRTTLFRKIGDFRALEKISREVKSITVIGGGFLGSELACA-LGRKSQASGIEVIQLF 256
Query: 164 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 223
           PE   + ++    L+    +  ++ GVK +  A ++++  G  G    +KL+DG  ++ D
Sbjct: 257 PEKGNMGKILPQYLSNWTMEKVKREGVKVMPNAIVQSV--GVSGGRLLIKLKDGRKVETD 314
Query: 224 TIVIGIGAKPTVSPFERVGL--NSSVGGIQVDGQFRTRMPGIFAIGDVAAF-PLKMYDRT 280
            IV  +G +P V   +  GL  +S  GG +V+ + + R   I+  GD A F  +K+  R 
Sbjct: 315 HIVTAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQAR-SNIWVAGDAACFYDIKLGRR- 372
Query: 281 ARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG 338
            RVEH DHA       +   L+ +  T    PY++  +F          W   G +VG
Sbjct: 373 -RVEHHDHA------VVSGRLAGENMTGAAKPYWHQSMF----------WSDLGPDVG 413

>pdb|1M6I|A Chain A, Crystal Structure Of Apoptosis Inducing Factor (Aif) Length = 493

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 93/358 (25%), Positives = 157/358 (43%), Gaps = 48/358 (13%)
Query: 5   RLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER----QTPEWY---- 56
           R+ IVS++   PY RP L+K   F  D    +   F     +G ER    Q P +Y    
Sbjct: 38  RVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQW--NGKERSIYFQPPSFYVSAQ 95
Query: 57  -----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGG 109
                +  G+ ++    V  +D+    +  N G  + Y   ++ATG T       ++ G 
Sbjct: 96  DLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGA 155
Query: 110 YLPG-VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWK---LDTTII--F 163
            +       R + D  +L     + K        ++G E+A A +G K   L T +I  F
Sbjct: 156 EVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACA-LGRKARALGTEVIQLF 214
Query: 164 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 223
           PE   + ++    L+    +  ++ GVK +  A ++++   S G++  +KL+DG  ++ D
Sbjct: 215 PEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGV-SSGKLL-IKLKDGRKVETD 272
Query: 224 TIVIGIGAKPTVSPFERVGL--NSSVGGIQVDGQFRTRMPGIFAIGDVAAF-PLKMYDRT 280
            IV  +G +P V   +  GL  +S  GG +V+ + + R   I+  GD A F  +K+  R 
Sbjct: 273 HIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQAR-SNIWVAGDAACFYDIKLGRR- 330
Query: 281 ARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG 338
            RVEH DHA       +   L+ +  T    PY++  +F          W   G +VG
Sbjct: 331 -RVEHHDHA------VVSGRLAGENMTGAAKPYWHQSMF----------WSDLGPDVG 371

>pdb|3IWA|A Chain A, Crystal Structure Of A Fad-Dependent Pyridine Nucleotide-Disulphide Oxidoreductase From Desulfovibrio Vulgaris Length = 472

Iteration: 1
 Score = 84.7 bits (208), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 115/233 (49%), Gaps = 13/233 (5%)
Query: 51  QTPEWYK-EKGIEMIYQDPVTSID-----IEKQTLITNSGKLLKYGSLIVATGCTASRFP 104
           + PE+++  K +E + +    +ID     +E + L T   + LKY  L++A G  A+R P
Sbjct: 70  RDPEFFRINKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPP 129
Query: 105 EKIGGYLPGVHYIRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAA-AVGWKLDTTI 161
            + G  L GV  + ++ +A+ +  ++   +  K       +IG+E+A + A  W +DTT+
Sbjct: 130 VE-GMDLAGVTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTV 188
Query: 162 IFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTID 221
           +   + ++    + SL+Q      ++N V    G  +  LE G +G+VA V + D  T+D
Sbjct: 189 VELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLE-GENGKVARV-ITDKRTLD 246
Query: 222 ADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFP 273
           AD +++  G  P        GL     G I VD + RT  P IFA GD    P
Sbjct: 247 ADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRTSDPDIFAGGDCVTIP 299

>pdb|1XHC|A Chain A, Nadh Oxidase /nitrite Reductase From Pyrococcus Furiosus Pfu-1140779- 001 Length = 367

Iteration: 1
 Score = 68.2 bits (165), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 137/315 (43%), Gaps = 37/315 (11%)
Query: 54  EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG 113
           +WY+++GIE+   +    ID  ++ +IT  G+ + Y +L++ATG  A R P+     + G
Sbjct: 68  DWYRKRGIEIRLAEEAKLIDRGRKVVITEKGE-VPYDTLVLATGARA-REPQ-----IKG 120
Query: 114 VHY---IRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQ 170
             Y   +R + DAD +  S+E + +       +IG+E+A           +I      L 
Sbjct: 121 KEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG 180
Query: 171 RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 230
                 L+   + + ++ GVKF   + +  LEA  +G      L +   I+    +  IG
Sbjct: 181 --LDEELSNMIKDMLEETGVKFFLNSEL--LEANEEG-----VLTNSGFIEGKVKICAIG 231
Query: 231 AKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHAR 290
             P V    R G+++   GI +D  FRT    ++AIGD A +       +  +     A 
Sbjct: 232 IVPNVDLARRSGIHTGR-GILIDDNFRTSAKDVYAIGDCAEY-------SGIIAGTAKAA 283
Query: 291 QSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKI 350
                 +  +L  +   Y++   F S VF++     K+     G+  GE    G +    
Sbjct: 284 MEQARVLADILKGEPRRYNF--KFRSTVFKFG----KLQIAIIGNTKGE----GKWIEDN 333
Query: 351 ATFWIDSGKLKGVLV 365
              + ++GK+ G +V
Sbjct: 334 TKVFYENGKIIGAVV 348

>pdb|2CDU|A Chain A, The Crystal Structure Of Water-Forming Nad(P)h Oxidase From Lactobacillus Sanfranciscensis Length = 452

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 95/231 (41%), Gaps = 20/231 (8%)
Query: 52  TPEWYKEKGIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFPEK 106
           +PE     G  +  +  VT++D E +T     LITN  K   Y  LI+ TG   +  P  
Sbjct: 64  SPEELSNLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPP-- 121
Query: 107 IGGYLPG-----VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTI 161
               +PG     V+  ++  DA  L     KAK        YIG E+A A      +  +
Sbjct: 122 ----IPGIDSSRVYLCKNYNDAKKLFEEAPKAKTITIIGSGYIGAELAEAYSNQNYNVNL 177
Query: 162 IFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTID 221
           I     +L + F         + Y+ +GV  V G+ +   E   D  +   K  DG  I 
Sbjct: 178 IDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEIIT--KTLDGKEIK 235
Query: 222 ADTIVIGIGAKPTVSPFE-RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 271
           +D  ++ IG +P     + +V +  + G I  D    +    IFA GD AA
Sbjct: 236 SDIAILCIGFRPNTELLKGKVAMLDN-GAIITDEYMHSSNRDIFAAGDSAA 285

>pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis Coenzyme A- Disulfide Reductase: A Structural Analysis Of Dual Nad(p)h Specificity Length = 480

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 105/229 (45%), Gaps = 13/229 (5%)
Query: 50  RQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKL-----LKYGSLIVATGCTASRFP 104
           R    +  + GI+   +  VT +D EK+ +     K        Y  L++ATG      P
Sbjct: 97  RNVKTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPV-MP 155
Query: 105 EKIGGYLPGVHYIRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 162
           E  G  L GVH ++ + DA+ ++ +LE  K +         IG+E+A   V       +I
Sbjct: 156 EWEGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMI 215
Query: 163 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 222
              +H +  ++   +A+   +   ++ ++ +   ++K  +     RV AV+ + G T  A
Sbjct: 216 ERNDH-IGTIYDGDMAEYIYKEADKHHIEILTNENVKAFKGNE--RVEAVETDKG-TYKA 271
Query: 223 DTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVA 270
           D +++ +G KP     E   + ++  G I+V+   +T +  ++A GD A
Sbjct: 272 DLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQTNVQDVYAAGDCA 320

>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding Domain Of The Dihydrolipoamide Acetylase Length = 455

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 91/196 (46%), Gaps = 13/196 (6%)
Query: 82  NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXX 141
           +S +   + + I+ATG   SR  E     LP   +   + D+   ++  E  K       
Sbjct: 127 DSAQTYTFKNAIIATG---SRPIE-----LPNFKFSNRILDSTGALNLGEVPKSLVVIGG 178
Query: 142 XYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNL 201
            YIG+E+  A   +    TI+     +L   F   +A   ++  ++ GV+ V  A  K  
Sbjct: 179 GYIGIELGTAYANFGTKVTILEGAGEILSG-FEKQMAAIIKKRLKKKGVEVVTNALAKGA 237
Query: 202 EAGSDGRVAAVKLE-DGSTIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFR 257
           E   DG     +   +  TIDAD +++ +G +P       E++G+  ++ G I+VD Q R
Sbjct: 238 EEREDGVTVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCR 297
Query: 258 TRMPGIFAIGDVAAFP 273
           T +P IFAIGD+   P
Sbjct: 298 TSVPNIFAIGDIVPGP 313

>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus Thermophilus Hb8 With Psbdo Length = 455

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 110/224 (49%), Gaps = 27/224 (12%)
Query: 75  EKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK 134
           E++ L+  +G+ L+   +++ATG +A   P         V Y R V   +AL S  E  K
Sbjct: 116 ERKVLVEETGEELEARYILIATG-SAPLIPP-----WAQVDYERVVTSTEAL-SFPEVPK 168
Query: 135 KXXXXXXXYIGMEVAAAAVGW-KLDTTIIFPENHLLQRLFTPSL----AQRYEQLYQQNG 189
           +        IG+E+    V W +L   +I  E   + R+  P++    ++  E+++++ G
Sbjct: 169 RLIVVGGGVIGLELG---VVWHRLGAEVIVLE--YMDRIL-PTMDLEVSRAAERVFKKQG 222
Query: 190 VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS--PFERVGLNS-S 246
           +    G  +  +   + G  A V+LE G  ++AD +++ +G +P       E  GL++  
Sbjct: 223 LTIRTGVRVTAVVPEAKG--ARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDE 280
Query: 247 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRT----ARVEHV 286
            G I VD   RTR+P I+AIGDV   P+  +  +    A VEH+
Sbjct: 281 RGRIPVDEHLRTRVPHIYAIGDVVRGPMLAHKASEEGIAAVEHM 324

>pdb|3CGB|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis Coenzyme A- Disulfide Reductase: A Structural Analysis Of Dual Nad(P)h Specificity Length = 480

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 102/230 (44%), Gaps = 13/230 (5%)
Query: 50  RQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKL-----LKYGSLIVATGCTASRFP 104
           R    +  + GI+   +  VT +D EK+ +     K        Y  L++ATG      P
Sbjct: 97  RNVKTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPV-XP 155
Query: 105 EKIGGYLPGVHYIRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 162
           E  G  L GVH ++ + DA+ ++ +LE  K +         IG+E A   V        I
Sbjct: 156 EWEGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEXAETFVELGKKVRXI 215
Query: 163 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 222
              +H +  ++    A+   +   ++ ++ +   ++K  +     RV AV+ + G T  A
Sbjct: 216 ERNDH-IGTIYDGDXAEYIYKEADKHHIEILTNENVKAFKGNE--RVEAVETDKG-TYKA 271
Query: 223 DTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAA 271
           D +++ +G KP     E   + ++  G I+V+   +T +  ++A GD A 
Sbjct: 272 DLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYXQTNVQDVYAAGDCAT 321

>pdb|4GCM|A Chain A, Crystal Structure Of A Thioredoxine Reductase (Trxb) From Staphylococcus Aureus Subsp. Aureus Mu50 At 1.80 A Resolution Length = 312

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 106/242 (43%), Gaps = 22/242 (9%)
Query: 36  RLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVA 95
             PGF    G     +  E  K+ G    Y D  +  D  +  +I    K L   ++I+A
Sbjct: 52  NFPGFEXITGPDLSTKXFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIA 111
Query: 96  TGCTASRFPEKIGGYLPGVHYI--RDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAV 153
           TG       +KIG  +PG   +  R V+       +  K K+          +E      
Sbjct: 112 TGAEY----KKIG--VPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLT 165
Query: 154 GWKLDTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV 212
            +    TI+   + L  QR+         ++ ++ + + F+   ++K++    DG+V +V
Sbjct: 166 KFADKVTIVHRRDELRAQRILQ-------DRAFKNDKIDFIWSHTLKSINE-KDGKVGSV 217
Query: 213 KL---EDGS--TIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIG 267
            L   +DGS  T +AD + I IG KP  +PF+ +G+ + VG I       T +PGIFA G
Sbjct: 218 TLTSTKDGSEETHEADGVFIYIGXKPLTAPFKDLGITNDVGYIVTKDDXTTSVPGIFAAG 277
Query: 268 DV 269
           DV
Sbjct: 278 DV 279

>pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase C531s Mutant Length = 565

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 107/247 (43%), Gaps = 34/247 (13%)
Query: 51  QTPEWYKEK-GIEMIYQDPVTSID-----IEKQTLITNSGKLLKYGSLIVATGCTASRFP 104
           QTPE +K +  +E+  +  V +ID     +  + L+  S     Y +L+++ G  A   P
Sbjct: 62  QTPESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGA-APIVP 120
Query: 105 EKIGGYLPGVHYIRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 162
              G   P  H +R++ D D ++ +++    +        +IG+E+  +     + TT++
Sbjct: 121 PIPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTLL 180
Query: 163 FPENHLLQRLFTP---SLAQRYEQLYQQNGVKFVKGASIKNLE-----------AGSDGR 208
                L  ++ TP    +A    Q  +  GV    G ++  +            AG D  
Sbjct: 181 ----ELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTA 236
Query: 209 VAAVK------LEDGSTIDADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMP 261
              +K      L +G  ++ D +++ IG +P        GL    +GGI+V+   +T  P
Sbjct: 237 HQHIKGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQTSDP 296
Query: 262 GIFAIGD 268
            I+A+GD
Sbjct: 297 AIYAVGD 303

>pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox Centre In Enterococcal Nadh Peroxidase To A Disulfide Length = 447

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 11/162 (6%)
Query: 143 YIGMEVAAAAVGWKLDTTII----FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 198
           YIG+E A A        T+I     P    L + FT  L +  E     N +    G ++
Sbjct: 159 YIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEA----NNITIATGETV 214
Query: 199 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRT 258
           +  E   DGRV  V + D +  DAD +V+ +G +P  +  +        G I+ D   RT
Sbjct: 215 ERYEG--DGRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRT 271
Query: 259 RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 300
             P +FA+GD         D    +    +AR+  +  +K L
Sbjct: 272 SEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNL 313

>pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And Cys42ser Mutants: Active Site Structure, Mechanistic Implications, And An Unusual Environment Of Arg303 Length = 447

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 11/162 (6%)
Query: 143 YIGMEVAAAAVGWKLDTTII----FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 198
           YIG+E A A        T+I     P    L + FT  L +  E     N +    G ++
Sbjct: 159 YIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEA----NNITIATGETV 214
Query: 199 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRT 258
           +  E   DGRV  V + D +  DAD +V+ +G +P  +  +        G I+ D   RT
Sbjct: 215 ERYEG--DGRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRT 271
Query: 259 RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 300
             P +FA+GD         D    +    +AR+  +  +K L
Sbjct: 272 SEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNL 313

>pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid Length = 447

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 69/162 (42%), Gaps = 11/162 (6%)
Query: 143 YIGMEVAAA--AVGWKLDTTIIF--PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 198
           YIG+E A A    G K+    I   P    L + FT  L +  E     N +    G ++
Sbjct: 159 YIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEA----NNITIATGETV 214
Query: 199 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRT 258
           +  E   DGRV  V + D +  DAD +V+ +G +P  +  +        G I+ D   RT
Sbjct: 215 ERYEG--DGRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRT 271
Query: 259 RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 300
             P +FA+GD         D    +    +AR+  +  +K L
Sbjct: 272 SEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNL 313

>pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox Centre In Enterococcal Nadh Peroxidase To A Disulfide Length = 447

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 11/162 (6%)
Query: 143 YIGMEVAAAAVGWKLDTTII----FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 198
           YIG+E A A        T+I     P    L + FT  L +  E     N +    G ++
Sbjct: 159 YIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEA----NNITIATGETV 214
Query: 199 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRT 258
           +  E   DGRV  V + D +  DAD +V+ +G +P  +  +        G I+ D   RT
Sbjct: 215 ERYEG--DGRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRT 271
Query: 259 RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 300
             P +FA+GD         D    +    +AR+  +  +K L
Sbjct: 272 SEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNL 313

>pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And Cys42ser Mutants: Active Site Structure, Mechanistic Implications, And An Unusual Environment Of Arg303 Length = 447

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 11/162 (6%)
Query: 143 YIGMEVAAAAVGWKLDTTII----FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 198
           YIG+E A A        T+I     P    L + FT  L +  E     N +    G ++
Sbjct: 159 YIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEA----NNITIATGETV 214
Query: 199 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRT 258
           +  E   DGRV  V + D +  DAD +V+ +G +P  +  +        G I+ D   RT
Sbjct: 215 ERYEG--DGRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRT 271
Query: 259 RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 300
             P +FA+GD         D    +    +AR+  +  +K L
Sbjct: 272 SEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNL 313

>pdb|2WOI|A Chain A, Trypanothione Reductase From Trypanosoma Brucei Length = 495

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 69/143 (48%), Gaps = 16/143 (11%)
Query: 166 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 225
           N+L+ R F  ++ +   +    NG++ +   +   +   +DG    V  E G T+D D +
Sbjct: 226 NNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVSLNTDGS-KHVTFESGKTLDVDVV 284
Query: 226 VIGIGAKPTVSPFE--RVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVA----AFPLKMYD 278
           ++ IG  P  +  +   VG+  +  GG+QVD   RT +P I+AIGD+       P+ + +
Sbjct: 285 MMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTNVPNIYAIGDITDRLMLTPVAINE 344
Query: 279 RTARVEHV--------DHARQSA 293
             A V+ V        DH R ++
Sbjct: 345 GAALVDTVFGNKPRKTDHTRVAS 367

>pdb|2WBA|A Chain A, Properties Of Trypanothione Reductase From T. Brucei Length = 492

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 69/143 (48%), Gaps = 16/143 (11%)
Query: 166 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 225
           N+L+ R F  ++ +   +    NG++ +   +   +   +DG    V  E G T+D D +
Sbjct: 223 NNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVSLNTDGS-KHVTFESGKTLDVDVV 281
Query: 226 VIGIGAKPTVSPFE--RVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVA----AFPLKMYD 278
           ++ IG  P  +  +   VG+  +  GG+QVD   RT +P I+AIGD+       P+ + +
Sbjct: 282 MMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTNVPNIYAIGDITDRLMLTPVAINE 341
Query: 279 RTARVEHV--------DHARQSA 293
             A V+ V        DH R ++
Sbjct: 342 GAALVDTVFGNKPRKTDHTRVAS 364

>pdb|4DNA|A Chain A, Crystal Structure Of Putative Glutathione Reductase From Sinorhizobium Meliloti 1021 Length = 463

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 89/200 (44%), Gaps = 25/200 (12%)
Query: 82  NSGKLLKYGSLIVATGCTASRFPEKIGGY------LPGVHYI---RDVADADALISSLEK 132
           N+ KLL  G  +     TA R    +GG+      LPG        +  D  AL  S+  
Sbjct: 121 NTVKLLASGKTV-----TAERIVIAVGGHPSPHDALPGHELCITSNEAFDLPALPESILI 175
Query: 133 AKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF 192
           A         YI +E A    G  + TT+I+    +L R F     +      ++ G++ 
Sbjct: 176 A------GGGYIAVEFANIFHGLGVKTTLIYRGKEILSR-FDQDXRRGLHAAXEEKGIRI 228
Query: 193 VKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSS-VGG 249
           +    I+++ A +DGR  A   + G  + AD + + +G  P  +    E  G+ ++ +G 
Sbjct: 229 LCEDIIQSVSADADGRRVATTXKHGEIV-ADQVXLALGRXPNTNGLGLEAAGVRTNELGA 287
Query: 250 IQVDGQFRTRMPGIFAIGDV 269
           I VD   RT  PGI+A+GDV
Sbjct: 288 IIVDAFSRTSTPGIYALGDV 307

>pdb|1H6V|A Chain A, Mammalian Thioredoxin Reductase Length = 499

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 72/145 (49%), Gaps = 13/145 (8%)
Query: 143 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG---ASIK 199
           Y+ +E A    G  LD T++     +L R F   +A +  +  +++G+KF++      I+
Sbjct: 200 YVALECAGFLAGIGLDVTVMV--RSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPTKIE 257
Query: 200 NLEAGSDGR--VAAVKLEDGSTIDA--DTIVIGIGAKPTVSP--FERVG--LNSSVGGIQ 251
            +EAG+ GR  V A       TI+   +T+++ +G          E VG  +N   G I 
Sbjct: 258 QIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVGRDSCTRTIGLETVGVKINEKTGKIP 317
Query: 252 VDGQFRTRMPGIFAIGDVAAFPLKM 276
           V  + +T +P I+AIGD+    L++
Sbjct: 318 VTDEEQTNVPYIYAIGDILEGKLEL 342

>pdb|3EAN|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein Thioredoxin Reductase 1 With Reduced C-Terminal Tail Length = 499

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 72/145 (49%), Gaps = 13/145 (8%)
Query: 143 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG---ASIK 199
           Y+ +E A    G  LD T++     +L R F   +A +  +  +++G+KF++      I+
Sbjct: 200 YVALECAGFLAGIGLDVTVMV--RSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPTKIE 257
Query: 200 NLEAGSDGR--VAAVKLEDGSTIDA--DTIVIGIGAKPTVSP--FERVG--LNSSVGGIQ 251
            +EAG+ GR  V A       TI+   +T+++ +G          E VG  +N   G I 
Sbjct: 258 QIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVGRDSCTRTIGLETVGVKINEKTGKIP 317
Query: 252 VDGQFRTRMPGIFAIGDVAAFPLKM 276
           V  + +T +P I+AIGD+    L++
Sbjct: 318 VTDEEQTNVPYIYAIGDILEGKLEL 342

>pdb|2V3A|A Chain A, Crystal Structure Of Rubredoxin Reductase From Pseudomonas Aeruginosa. Length = 384

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 90/204 (44%), Gaps = 9/204 (4%)
Query: 69  VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 128
           VT ID   Q +     ++ +Y  L++A G    R P + G     ++ I D+ D      
Sbjct: 83  VTGIDPGHQRIWIGEEEV-RYRDLVLAWGAEPIRVPVE-GDAQDALYPINDLEDYARFRQ 140
Query: 129 SLEKAKKXXXXXXXYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ 186
           +    ++        IG E A   ++ G++LD  ++ P   ++  L  P+ A+  +   +
Sbjct: 141 AAAGKRRVLLLGAGLIGCEFANDLSSGGYQLD--VVAPCEQVMPGLLHPAAAKAVQAGLE 198
Query: 187 QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS 246
             GV+F  G  + +L+   +G  A   L DG  I  D +V  +G +P        GL  +
Sbjct: 199 GLGVRFHLGPVLASLKKAGEGLEA--HLSDGEVIPCDLVVSAVGLRPRTELAFAAGLAVN 256
Query: 247 VGGIQVDGQFRTRMPGIFAIGDVA 270
            G I VD   RT    I+A+GD A
Sbjct: 257 RG-IVVDRSLRTSHANIYALGDCA 279

>pdb|2BC1|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase: C44s Nox Length = 490

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 107/245 (43%), Gaps = 24/245 (9%)
Query: 54  EWYKEKGIEMIYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGCTASRFPEK---- 106
           E  +  G ++  + PV SID + +T   L+     +  Y  LI ATG      P K    
Sbjct: 100 EELESLGAKVYMESPVQSIDYDAKTVTALVDGKNHVETYDKLIFATGSQPILPPIKGAEI 159
Query: 107 ------IGGYLPGVHYIRDVADADALISSLEKA--KKXXXXXXXYIGMEVAAAAVGWKLD 158
                     L  + +++   ++  +I+ LE    K+       YIG+E+A A      +
Sbjct: 160 KEGSLEFEATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRKGKE 219
Query: 159 TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS 218
             +I   +  L   +   L     +  +++G++   G ++K  E   +G+V  + + D +
Sbjct: 220 VVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVK--EVAGNGKVEKI-ITDKN 276
Query: 219 TIDADTIVIGIGAKPTVSPFE-RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMY 277
             D D +++ +G +P  +    ++ L  + G   V+ +  T +PG++AIGD A     +Y
Sbjct: 277 EYDVDMVILAVGFRPNTTLGNGKIDLFRN-GAFLVNKRQETSIPGVYAIGDCAT----IY 331
Query: 278 DRTAR 282
           D   R
Sbjct: 332 DNATR 336

>pdb|2BC0|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase: Wild-Type Nox Length = 490

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 107/245 (43%), Gaps = 24/245 (9%)
Query: 54  EWYKEKGIEMIYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGCTASRFPEK---- 106
           E  +  G ++  + PV SID + +T   L+     +  Y  LI ATG      P K    
Sbjct: 100 EELESLGAKVYMESPVQSIDYDAKTVTALVDGKNHVETYDKLIFATGSQPILPPIKGAEI 159
Query: 107 ------IGGYLPGVHYIRDVADADALISSLEKA--KKXXXXXXXYIGMEVAAAAVGWKLD 158
                     L  + +++   ++  +I+ LE    K+       YIG+E+A A      +
Sbjct: 160 KEGSLEFEATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRKGKE 219
Query: 159 TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS 218
             +I   +  L   +   L     +  +++G++   G ++K  E   +G+V  + + D +
Sbjct: 220 VVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVK--EVAGNGKVEKI-ITDKN 276
Query: 219 TIDADTIVIGIGAKPTVSPFE-RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMY 277
             D D +++ +G +P  +    ++ L  + G   V+ +  T +PG++AIGD A     +Y
Sbjct: 277 EYDVDMVILAVGFRPNTTLGNGKIDLFRN-GAFLVNKRQETSIPGVYAIGDCAT----IY 331
Query: 278 DRTAR 282
           D   R
Sbjct: 332 DNATR 336

>pdb|2HQM|A Chain A, Crystal Structure Of Glutathione Reductase Glr1 From The Yeast Saccharomyces Cerevisiae Length = 479

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 90/202 (44%), Gaps = 15/202 (7%)
Query: 71  SIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL 130
           +++++K+    N+ ++     ++VATG  A  FPE I G+  G        D+D      
Sbjct: 134 NVEVQKRD---NTTEVYSANHILVATGGKAI-FPENIPGFELG-------TDSDGFFRLE 182
Query: 131 EKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV 190
           E+ KK       YIG+E+A    G   +T ++     +L R F   +       Y + G+
Sbjct: 183 EQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVL-RKFDECIQNTITDHYVKEGI 241
Query: 191 KFVKGASIKNLEAGSDGRVAAVKLEDGSTI-DADTIVIGIGAKPTVSP-FERVGLN-SSV 247
              K + I  +E   +     + + D  +I D D ++  IG K  +    E VG+  +S 
Sbjct: 242 NVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHLGMGSENVGIKLNSH 301
Query: 248 GGIQVDGQFRTRMPGIFAIGDV 269
             I  D    T +P I+++GDV
Sbjct: 302 DQIIADEYQNTNVPNIYSLGDV 323

>pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m Length = 447

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 11/162 (6%)
Query: 143 YIGMEVAAA--AVGWKLDTTIIF--PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 198
           YIG+E A A    G K+    I   P    L + FT  L +  E     N +    G ++
Sbjct: 159 YIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEA----NNITIATGETV 214
Query: 199 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRT 258
           +  E   DGRV  V + D +  DAD +V+ +G +P  +  +        G I+ D   RT
Sbjct: 215 ERYEG--DGRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRT 271
Query: 259 RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 300
             P +FA+GD         D    +    +A +  +  +K L
Sbjct: 272 SEPDVFAVGDATLIKYNPADTEVNIALATNAMKQGRFAVKNL 313

>pdb|2ZZ0|A Chain A, Crystal Structure Of Human Thioredoxin Reductase I (Secys 498 Cys) Length = 513

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 13/138 (9%)
Query: 143 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG---ASIK 199
           Y+ +E A    G  LD T++     +L R F   +A +  +  +++G+KF++      ++
Sbjct: 214 YVALECAGFLAGIGLDVTVMV--RSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVE 271
Query: 200 NLEAGSDGRVAAVKLEDGSTI----DADTIVIGIGAKPTVSP--FERVG--LNSSVGGIQ 251
            +EAG+ GR+  V     S      + +T+++ IG          E VG  +N   G I 
Sbjct: 272 QIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIP 331
Query: 252 VDGQFRTRMPGIFAIGDV 269
           V  + +T +P I+AIGD+
Sbjct: 332 VTDEEQTNVPYIYAIGDI 349

>pdb|2J3N|A Chain A, X-Ray Structure Of Human Thioredoxin Reductase 1 Length = 519

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 13/138 (9%)
Query: 143 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG---ASIK 199
           Y+ +E A    G  LD T++     +L R F   +A +  +  +++G+KF++      ++
Sbjct: 220 YVALECAGFLAGIGLDVTVMV--RSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVE 277
Query: 200 NLEAGSDGRVAAVKLEDGSTI----DADTIVIGIGAKPTVSP--FERVG--LNSSVGGIQ 251
            +EAG+ GR+  V     S      + +T+++ IG          E VG  +N   G I 
Sbjct: 278 QIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIP 337
Query: 252 VDGQFRTRMPGIFAIGDV 269
           V  + +T +P I+AIGD+
Sbjct: 338 VTDEEQTNVPYIYAIGDI 355

>pdb|3QFA|A Chain A, Crystal Structure Of The Human Thioredoxin Reductase-Thioredoxin Complex Length = 519

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 13/138 (9%)
Query: 143 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG---ASIK 199
           Y+ +E A    G  LD T++     +L R F   +A +  +  +++G+KF++      ++
Sbjct: 220 YVALECAGFLAGIGLDVTVMV--RSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVE 277
Query: 200 NLEAGSDGRVAAVKLEDGSTI----DADTIVIGIGAKPTVSP--FERVG--LNSSVGGIQ 251
            +EAG+ GR+  V     S      + +T+++ IG          E VG  +N   G I 
Sbjct: 278 QIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIP 337
Query: 252 VDGQFRTRMPGIFAIGDV 269
           V  + +T +P I+AIGD+
Sbjct: 338 VTDEEQTNVPYIYAIGDI 355

>pdb|2CFY|A Chain A, Crystal Structure Of Human Thioredoxin Reductase 1 Length = 521

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 13/138 (9%)
Query: 143 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG---ASIK 199
           Y+ +E A    G  LD T++     +L R F   +A +  +  +++G+KF++      ++
Sbjct: 222 YVALECAGFLAGIGLDVTVMV--RSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVE 279
Query: 200 NLEAGSDGRVAAVKLEDGSTI----DADTIVIGIGAKPTVSP--FERVG--LNSSVGGIQ 251
            +EAG+ GR+  V     S      + +T+++ IG          E VG  +N   G I 
Sbjct: 280 QIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIP 339
Query: 252 VDGQFRTRMPGIFAIGDV 269
           V  + +T +P I+AIGD+
Sbjct: 340 VTDEEQTNVPYIYAIGDI 357

>pdb|3RNM|A Chain A, The Crystal Structure Of The Subunit Binding Of Human Dihydrolipoamide Transacylase (E2b) Bound To Human Dihydrolipoamide Dehydrogenase (E3) Length = 495

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 98/232 (42%), Gaps = 29/232 (12%)
Query: 91  SLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA-KKXXXXXXXYIGMEVA 149
           ++++ATG   + FP        G+    D   +     SL+K  +K        IG+E+ 
Sbjct: 164 NILIATGSEVTPFP--------GITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELG 215
Query: 150 AAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV 209
           +       D T +    H+        +++ ++++ Q+ G KF     +      SDG++
Sbjct: 216 SVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKI 275
Query: 210 AAVKLEDGS-----TIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFRTRMP 261
             V +E  S      I  D +++ IG +P       E +G+     G I V+ +F+T++P
Sbjct: 276 D-VSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIP 334
Query: 262 GIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT-YDYLP 312
            I+AIGDV A P+  +           A      C++ +     H  Y+ +P
Sbjct: 335 NIYAIGDVVAGPMLAHK----------AEDEGIICVEGMAGGAVHIDYNCVP 376

>pdb|1ZY8|A Chain A, The Crystal Structure Of Dihydrolipoamide Dehydrogenase And Dihydrolipoamide Dehydrogenase-Binding Protein (Didomain) Subcomplex Of Human Pyruvate Dehydrogenase Complex. Length = 474

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 98/232 (42%), Gaps = 29/232 (12%)
Query: 91  SLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA-KKXXXXXXXYIGMEVA 149
           ++++ATG   + FP        G+    D   +     SL+K  +K        IG+E+ 
Sbjct: 143 NILIATGSEVTPFP--------GITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELG 194
Query: 150 AAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV 209
           +       D T +    H+        +++ ++++ Q+ G KF     +      SDG++
Sbjct: 195 SVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKI 254
Query: 210 AAVKLEDGS-----TIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFRTRMP 261
             V +E  S      I  D +++ IG +P       E +G+     G I V+ +F+T++P
Sbjct: 255 D-VSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIP 313
Query: 262 GIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT-YDYLP 312
            I+AIGDV A P+  +           A      C++ +     H  Y+ +P
Sbjct: 314 NIYAIGDVVAGPMLAHK----------AEDEGIICVEGMAGGAVHIDYNCVP 355

>pdb|1ZMC|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase Complexed To Nad+ Length = 474

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 98/232 (42%), Gaps = 29/232 (12%)
Query: 91  SLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA-KKXXXXXXXYIGMEVA 149
           ++++ATG   + FP        G+    D   +     SL+K  +K        IG+E+ 
Sbjct: 143 NILIATGSEVTPFP--------GITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELG 194
Query: 150 AAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV 209
           +       D T +    H+        +++ ++++ Q+ G KF     +      SDG++
Sbjct: 195 SVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKI 254
Query: 210 AAVKLEDGS-----TIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFRTRMP 261
             V +E  S      I  D +++ IG +P       E +G+     G I V+ +F+T++P
Sbjct: 255 D-VSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIP 313
Query: 262 GIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT-YDYLP 312
            I+AIGDV A P+  +           A      C++ +     H  Y+ +P
Sbjct: 314 NIYAIGDVVAGPMLAHK----------AEDEGIICVEGMAGGAVHIDYNCVP 355

>pdb|3NTA|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase Length = 574

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 104/247 (42%), Gaps = 34/247 (13%)
Query: 51  QTPEWYKEK-GIEMIYQDPVTSID-----IEKQTLITNSGKLLKYGSLIVATGCTASRFP 104
           QTPE +K +  +E+  +  V +ID     +  + L+  S     Y +L+++ G  A   P
Sbjct: 62  QTPESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGA-APIVP 120
Query: 105 EKIGGYLPGVHYIRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 162
              G   P  H +R++ D D ++ +++    +        +IG+E   +     + TT++
Sbjct: 121 PIPGVDNPLTHSLRNIPDXDRILQTIQXNNVEHATVVGGGFIGLEXXESLHHLGIKTTLL 180
Query: 163 FPENHLLQRLFTP---SLAQRYEQLYQQNGVKFVKGASIKNLE-----------AGSDGR 208
                L  ++ TP     A    Q  +  GV    G ++  +            AG D  
Sbjct: 181 ----ELADQVXTPVDREXAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTA 236
Query: 209 VAAVK------LEDGSTIDADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMP 261
              +K      L +G  ++ D ++  IG +P        GL    +GGI+V+   +T  P
Sbjct: 237 HQHIKGHLSLTLSNGELLETDLLIXAIGVRPETQLARDAGLAIGELGGIKVNAXXQTSDP 296
Query: 262 GIFAIGD 268
            I+A+GD
Sbjct: 297 AIYAVGD 303

>pdb|3NT6|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase C43sC531S DOUBLE MUTANT Length = 574

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 104/247 (42%), Gaps = 34/247 (13%)
Query: 51  QTPEWYKEK-GIEMIYQDPVTSID-----IEKQTLITNSGKLLKYGSLIVATGCTASRFP 104
           QTPE +K +  +E+  +  V +ID     +  + L+  S     Y +L+++ G  A   P
Sbjct: 62  QTPESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGA-APIVP 120
Query: 105 EKIGGYLPGVHYIRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 162
              G   P  H +R++ D D ++ +++    +        +IG+E   +     + TT++
Sbjct: 121 PIPGVDNPLTHSLRNIPDXDRILQTIQXNNVEHATVVGGGFIGLEXXESLHHLGIKTTLL 180
Query: 163 FPENHLLQRLFTP---SLAQRYEQLYQQNGVKFVKGASIKNLE-----------AGSDGR 208
                L  ++ TP     A    Q  +  GV    G ++  +            AG D  
Sbjct: 181 ----ELADQVXTPVDREXAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTA 236
Query: 209 VAAVK------LEDGSTIDADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMP 261
              +K      L +G  ++ D ++  IG +P        GL    +GGI+V+   +T  P
Sbjct: 237 HQHIKGHLSLTLSNGELLETDLLIXAIGVRPETQLARDAGLAIGELGGIKVNAXXQTSDP 296
Query: 262 GIFAIGD 268
            I+A+GD
Sbjct: 297 AIYAVGD 303

>pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase In The Oxidized And Nadph Reduced State Length = 491

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 15/137 (10%)
Query: 168 LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 227
           ++ R F  +L +   +    NG++ +   +   +E  +DG   +V  E G  +D D +++
Sbjct: 225 MILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGS-KSVTFESGKKMDFDLVMM 283
Query: 228 GIGAKPTVSPFE--RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA----FPLKMYDRTA 281
            IG  P     +    G+    GG+QVD   RT +  I+AIGDV       P+ + +  A
Sbjct: 284 AIGRSPRTKDLQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAINEAAA 343
Query: 282 RVEHV--------DHAR 290
            V+ V        DH R
Sbjct: 344 LVDTVFGTNPRKTDHTR 360

>pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With Trypanothione, And The Structure- Based Discovery Of New Natural Product Inhibitors Length = 486

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 15/137 (10%)
Query: 168 LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 227
           ++ R F  +L +   +    NG++ +   +   +E  +DG   +V  E G  +D D +++
Sbjct: 225 MILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGS-KSVTFESGKKMDFDLVMM 283
Query: 228 GIGAKPTVSPFE--RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA----FPLKMYDRTA 281
            IG  P     +    G+    GG+QVD   RT +  I+AIGDV       P+ + +  A
Sbjct: 284 AIGRSPRTKDLQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAINEAAA 343
Query: 282 RVEHV--------DHAR 290
            V+ V        DH R
Sbjct: 344 LVDTVFGTTPRKTDHTR 360

>pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With The Inhibitor Quinacrine Mustard Length = 492

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 15/137 (10%)
Query: 168 LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 227
           ++ R F  +L +   +    NG++ +   +   +E  +DG   +V  E G  +D D +++
Sbjct: 226 MILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGS-KSVTFESGKKMDFDLVMM 284
Query: 228 GIGAKPTVSPFE--RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA----FPLKMYDRTA 281
            IG  P     +    G+    GG+QVD   RT +  I+AIGDV       P+ + +  A
Sbjct: 285 AIGRSPRTKDLQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAINEAAA 344
Query: 282 RVEHV--------DHAR 290
            V+ V        DH R
Sbjct: 345 LVDTVFGTTPRKTDHTR 361

>pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form) Length = 485

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 15/137 (10%)
Query: 168 LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 227
           ++ R F  +L +   +    NG++ +   +   +E  +DG   +V  E G  +D D +++
Sbjct: 224 MILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGS-KSVTFESGKKMDFDLVMM 282
Query: 228 GIGAKPTVSPFE--RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA----FPLKMYDRTA 281
            IG  P     +    G+    GG+QVD   RT +  I+AIGDV       P+ + +  A
Sbjct: 283 AIGRSPRTKDLQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAINEAAA 342
Query: 282 RVEHV--------DHAR 290
            V+ V        DH R
Sbjct: 343 LVDTVFGTTPRKTDHTR 359

>pdb|1GER|A Chain A, The Structure Of Glutathione Reductase From Escherichia Coli At 1.86 Angstroms Resolution: Comparison With The Enzyme From Human Erythrocytes Length = 450

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 89/198 (44%), Gaps = 15/198 (7%)
Query: 74  IEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA 133
           ++ +TL  N G+ +    +++ATG   S  P+     +PGV Y     D+D   +     
Sbjct: 118 VDAKTLEVN-GETITADHILIATGGRPSH-PD-----IPGVEY---GIDSDGFFALPALP 167
Query: 134 KKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 193
           ++       YI +E+A    G    T + F   H   R F P +++   ++    G +  
Sbjct: 168 ERVAVVGAGYIAVELAGVINGLGAKTHL-FVRKHAPLRSFDPMISETLVEVMNAEGPQLH 226
Query: 194 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSSVGG-I 250
             A  K +   +DG +  ++LEDG +   D ++  IG +P       E  G+ ++  G I
Sbjct: 227 TNAIPKAVVKNTDGSLT-LELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYI 285
Query: 251 QVDGQFRTRMPGIFAIGD 268
            VD    T + GI+A+GD
Sbjct: 286 VVDKYQNTNIEGIYAVGD 303

>pdb|4EQS|A Chain A, Crystal Structure Of The Y419f Mutant Of Staphylococcus Aureus Coadr Length = 437

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 97/242 (40%), Gaps = 22/242 (9%)
Query: 52  TPE-WYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPE 105
           TPE +Y  K I +     V +I+ E+QT+      TN      Y  LI++ G +A+    
Sbjct: 62  TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 119
Query: 106 KIGGYLPGVHY-IRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 162
              G+   + + +R++ D DA+   ++  +  K       Y+ +EV        L  T+I
Sbjct: 120 ---GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 176
Query: 163 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 222
              + +  +L    + Q       +  + +     I  +          +  + G     
Sbjct: 177 HRSDKI-NKLMDADMNQPILDELDKREIPYRLNEEINAINGNE------ITFKSGKVEHY 229
Query: 223 DTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA 281
           D I+ G+G  P     E   +     G I V+ +F T +P I+AIGD+A    +  D  A
Sbjct: 230 DMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPA 289
Query: 282 RV 283
            V
Sbjct: 290 SV 291

>pdb|4EQR|A Chain A, Crystal Structure Of The Y361f Mutant Of Staphylococcus Aureus Coadr Length = 437

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 97/242 (40%), Gaps = 22/242 (9%)
Query: 52  TPE-WYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPE 105
           TPE +Y  K I +     V +I+ E+QT+      TN      Y  LI++ G +A+    
Sbjct: 62  TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 119
Query: 106 KIGGYLPGVHY-IRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 162
              G+   + + +R++ D DA+   ++  +  K       Y+ +EV        L  T+I
Sbjct: 120 ---GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 176
Query: 163 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 222
              + +  +L    + Q       +  + +     I  +          +  + G     
Sbjct: 177 HRSDKI-NKLMDADMNQPILDELDKREIPYRLNEEINAINGNE------ITFKSGKVEHY 229
Query: 223 DTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA 281
           D I+ G+G  P     E   +     G I V+ +F T +P I+AIGD+A    +  D  A
Sbjct: 230 DMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPA 289
Query: 282 RV 283
            V
Sbjct: 290 SV 291

>pdb|4EQW|A Chain A, Crystal Structure Of The Y361f, Y419f Mutant Of Staphylococcus Aureus Coadr Length = 437

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 97/242 (40%), Gaps = 22/242 (9%)
Query: 52  TPE-WYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPE 105
           TPE +Y  K I +     V +I+ E+QT+      TN      Y  LI++ G +A+    
Sbjct: 62  TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 119
Query: 106 KIGGYLPGVHY-IRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 162
              G+   + + +R++ D DA+   ++  +  K       Y+ +EV        L  T+I
Sbjct: 120 ---GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 176
Query: 163 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 222
              + +  +L    + Q       +  + +     I  +          +  + G     
Sbjct: 177 HRSDKI-NKLMDADMNQPILDELDKREIPYRLNEEINAINGNE------ITFKSGKVEHY 229
Query: 223 DTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA 281
           D I+ G+G  P     E   +     G I V+ +F T +P I+AIGD+A    +  D  A
Sbjct: 230 DMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPA 289
Query: 282 RV 283
            V
Sbjct: 290 SV 291

>pdb|4EMW|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The Covalent Inhibitor Etvc-Coa Length = 436

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 97/242 (40%), Gaps = 22/242 (9%)
Query: 52  TPE-WYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPE 105
           TPE +Y  K I +     V +I+ E+QT+      TN      Y  LI++ G +A+    
Sbjct: 62  TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 119
Query: 106 KIGGYLPGVHY-IRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 162
              G+   + + +R++ D DA+   ++  +  K       Y+ +EV        L  T+I
Sbjct: 120 ---GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 176
Query: 163 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 222
              + +  +L    + Q       +  + +     I  +          +  + G     
Sbjct: 177 HRSDKI-NKLMDADMNQPILDELDKREIPYRLNEEINAINGNE------ITFKSGKVEHY 229
Query: 223 DTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA 281
           D I+ G+G  P     E   +     G I V+ +F T +P I+AIGD+A    +  D  A
Sbjct: 230 DMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPA 289
Query: 282 RV 283
            V
Sbjct: 290 SV 291

>pdb|4EM3|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The Covalent Inhibitor Mevs-Coa Length = 437

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 97/242 (40%), Gaps = 22/242 (9%)
Query: 52  TPE-WYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPE 105
           TPE +Y  K I +     V +I+ E+QT+      TN      Y  LI++ G +A+    
Sbjct: 62  TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 119
Query: 106 KIGGYLPGVHY-IRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 162
              G+   + + +R++ D DA+   ++  +  K       Y+ +EV        L  T+I
Sbjct: 120 ---GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 176
Query: 163 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 222
              + +  +L    + Q       +  + +     I  +          +  + G     
Sbjct: 177 HRSDKI-NKLMDADMNQPILDELDKREIPYRLNEEINAINGNE------ITFKSGKVEHY 229
Query: 223 DTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA 281
           D I+ G+G  P     E   +     G I V+ +F T +P I+AIGD+A    +  D  A
Sbjct: 230 DMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPA 289
Query: 282 RV 283
            V
Sbjct: 290 SV 291

>pdb|1YQZ|A Chain A, Structure Of Coenzyme A-Disulfide Reductase From Staphylococcus Aureus Refined At 1.54 Angstrom Resolution Length = 438

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 97/242 (40%), Gaps = 22/242 (9%)
Query: 52  TPE-WYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPE 105
           TPE +Y  K I +     V +I+ E+QT+      TN      Y  LI++ G +A+    
Sbjct: 63  TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 120
Query: 106 KIGGYLPGVHY-IRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 162
              G+   + + +R++ D DA+   ++  +  K       Y+ +EV        L  T+I
Sbjct: 121 ---GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 177
Query: 163 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 222
              + +  +L    + Q       +  + +     I  +          +  + G     
Sbjct: 178 HRSDKI-NKLMDADMNQPILDELDKREIPYRLNEEINAINGNE------ITFKSGKVEHY 230
Query: 223 DTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA 281
           D I+ G+G  P     E   +     G I V+ +F T +P I+AIGD+A    +  D  A
Sbjct: 231 DMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPA 290
Query: 282 RV 283
            V
Sbjct: 291 SV 292

>pdb|4EQX|A Chain A, Crystal Structure Of The C43s Mutant Of Staphylococcus Aureus Coadr Length = 437

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 97/242 (40%), Gaps = 22/242 (9%)
Query: 52  TPE-WYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPE 105
           TPE +Y  K I +     V +I+ E+QT+      TN      Y  LI++ G +A+    
Sbjct: 62  TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 119
Query: 106 KIGGYLPGVHY-IRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 162
              G+   + + +R++ D DA+   ++  +  K       Y+ +EV        L  T+I
Sbjct: 120 ---GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 176
Query: 163 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 222
              + +  +L    + Q       +  + +     I  +          +  + G     
Sbjct: 177 HRSDKI-NKLMDADMNQPILDELDKREIPYRLNEEINAINGNE------ITFKSGKVEHY 229
Query: 223 DTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA 281
           D I+ G+G  P     E   +     G I V+ +F T +P I+AIGD+A    +  D  A
Sbjct: 230 DMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPA 289
Query: 282 RV 283
            V
Sbjct: 290 SV 291

>pdb|3KLJ|A Chain A, Crystal Structure Of Nadh:rubredoxin Oxidoreductase From Clostridium Acetobutylicum Length = 385

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/274 (22%), Positives = 112/274 (40%), Gaps = 46/274 (16%)
Query: 6   LCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIY 65
           + +++ E Y PY RP L +     +  K   +             +  +WY++  I++I 
Sbjct: 35  ITMINSEKYLPYYRPRLNE-----IIAKNKSIDDILI--------KKNDWYEKNNIKVIT 81
Query: 66  QDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADA 125
            +  TSID   + +   SG+ +KY  LI+A+G  A++        +P    I  +   D 
Sbjct: 82  SEFATSIDPNNKLVTLKSGEKIKYEKLIIASGSIANKIK------VPHADEIFSLYSYDD 135
Query: 126 LISSLEKAK---KXXXXXXXYIGMEVAAAAV--GWKLDTTII--FPENHLLQRLFTPSLA 178
            +   ++ K   K        +G+E+A A +  G      II  +P    L R     L 
Sbjct: 136 ALKIKDECKNKGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLERQLDRDGGLFLK 195
Query: 179 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF 238
            + ++L    G+K    ++ + +               G  I +  ++  +G KP +   
Sbjct: 196 DKLDRL----GIKIYTNSNFEEM---------------GDLIRSSCVITAVGVKPNLDFI 236
Query: 239 ERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAF 272
           +   + +S  GI V+    T +  I+A GDVA F
Sbjct: 237 KDTEI-ASKRGILVNDHMETSIKDIYACGDVAEF 269

>pdb|1DXL|A Chain A, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase From Pisum Sativum Length = 470

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 105/241 (43%), Gaps = 27/241 (11%)
Query: 80  ITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYI-RDVADADALISSLEKAKKXXX 138
           I     ++K   +I+ATG             LPGV    + +  +   ++  E  KK   
Sbjct: 131 IEGENTVVKGKHIIIATGSDVKS--------LPGVTIDEKKIVSSTGALALSEIPKKLVV 182
Query: 139 XXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 198
               YIG+E+ +       + T++   + ++  +    + +++++  ++ G+KF     +
Sbjct: 183 IGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTM-DAEIRKQFQRSLEKQGMKFKLKTKV 241
Query: 199 KNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVS--PFERVGLNSS-VGGIQV 252
             ++   DG    V+   G   + I+AD +++  G  P  S    +++G+ +  +G I V
Sbjct: 242 VGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILV 301
Query: 253 DGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT-YDYL 311
           + +F T + G++AIGDV   P+  +           A +    C++ L     H  YD +
Sbjct: 302 NERFSTNVSGVYAIGDVIPGPMLAHK----------AEEDGVACVEYLAGKVGHVDYDKV 351
Query: 312 P 312
           P
Sbjct: 352 P 352

>pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd Length = 588

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 8/155 (5%)
Query: 117 IRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFT 174
           +R+V D D + + ++  K +        +IG+E         ++ T++   N +   +  
Sbjct: 169 LRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEXVENLRERGIEVTLVEXANQVXPPIDY 228
Query: 175 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 234
              A  +E   + + V+ V    +  LE       A V+L+ GS I  D +++ IG +P 
Sbjct: 229 EXAAYVHEHX-KNHDVELVFEDGVDALEENG----AVVRLKSGSVIQTDXLILAIGVQPE 283
Query: 235 VSPFERVGLNSSV-GGIQVDGQFRTRMPGIFAIGD 268
            S  +  GL   V G I+V+ +F+T  P I+AIGD
Sbjct: 284 SSLAKGAGLALGVRGTIKVNEKFQTSDPHIYAIGD 318

>pdb|3DGZ|A Chain A, Crystal Structure Of Mouse Mitochondrial Thioredoxin Reductase, C- Terminal 3-Residue Truncation Length = 488

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 87/195 (44%), Gaps = 21/195 (10%)
Query: 86  LLKYGSLIVATGCTASRFPEKIGGYLP-GVHYIRDVADADALISSLEKAKKXXXXXXXYI 144
           LL    +++ATG    R+P ++ G L  G+        +D +    E   K       Y+
Sbjct: 145 LLSAEHIVIATG-GRPRYPTQVKGALEYGI-------TSDDIFWLKESPGKTLVVGASYV 196
Query: 145 GMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG 204
            +E A    G  LDTT++     L  R F   ++    +  + +G +F+KG    +++  
Sbjct: 197 ALECAGFLTGIGLDTTVMMRSIPL--RGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKL 254
Query: 205 SDGRVAAVKLEDGS-----TIDADTIVIGIGAKPTVSPF--ERVGLNSSVGG--IQVDGQ 255
              ++  V  ED +     T   DT++  IG  P       E+ G++++     I VD Q
Sbjct: 255 PTNQLQ-VTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQ 313
Query: 256 FRTRMPGIFAIGDVA 270
             T +P I+AIGDVA
Sbjct: 314 EATSVPHIYAIGDVA 328

>pdb|1ZDL|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2 Length = 517

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 87/195 (44%), Gaps = 21/195 (10%)
Query: 86  LLKYGSLIVATGCTASRFPEKIGGYLP-GVHYIRDVADADALISSLEKAKKXXXXXXXYI 144
           LL    +++ATG    R+P ++ G L  G+        +D +    E   K       Y+
Sbjct: 171 LLSAEHIVIATG-GRPRYPTQVKGALEYGI-------TSDDIFWLKESPGKTLVVGASYV 222
Query: 145 GMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG 204
            +E A    G  LDTT++     L  R F   ++    +  + +G +F+KG    +++  
Sbjct: 223 ALECAGFLTGIGLDTTVMMRSIPL--RGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKL 280
Query: 205 SDGRVAAVKLEDGS-----TIDADTIVIGIGAKPTVSPF--ERVGLNSSVGG--IQVDGQ 255
              ++  V  ED +     T   DT++  IG  P       E+ G++++     I VD Q
Sbjct: 281 PTNQLQ-VTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQ 339
Query: 256 FRTRMPGIFAIGDVA 270
             T +P I+AIGDVA
Sbjct: 340 EATSVPHIYAIGDVA 354

>pdb|3AB1|A Chain A, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase Length = 360

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 205 SDGRVAAVKLE--DGS--TIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRM 260
           S+G +  V L   DGS  T++AD ++I IG K  + P  R  L      + VD   +T +
Sbjct: 231 SNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLARWDLELYENALVVDSHMKTSV 290
Query: 261 PGIFAIGDVAAFPLKM 276
            G++A GD+A +P K+
Sbjct: 291 DGLYAAGDIAYYPGKL 306

>pdb|1ONF|A Chain A, Crystal Structure Of Plasmodium Falciparum Glutathione Reductase Length = 500

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 73/163 (44%), Gaps = 6/163 (3%)
Query: 111 LPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQ 170
            P V  I +   +D   + ++++KK       YI +E+        +D+ I    N +L+
Sbjct: 155 FPPVKGIENTISSDEFFN-IKESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR 213
Query: 171 RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA-DTIVIGI 229
           + F  S+    E   ++N +  V  A +  ++  SD  ++ + L DG   +  D ++  +
Sbjct: 214 K-FDESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLS-IHLSDGRIYEHFDHVIYCV 271
Query: 230 GAKPTVS--PFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVA 270
           G  P       E++ + ++   I VD   RT +  I+A+GD  
Sbjct: 272 GRSPDTENLKLEKLNVETNNNYIVVDENQRTSVNNIYAVGDCC 314

>pdb|1GES|A Chain A, Anatomy Of An Engineered Nad-Binding Site Length = 450

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 88/204 (43%), Gaps = 27/204 (13%)
Query: 74  IEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA 133
           ++ +TL  N G+ +    +++ATG   S  P+     +PGV Y     D+D   +     
Sbjct: 118 VDAKTLEVN-GETITADHILIATGGRPSH-PD-----IPGVEY---GIDSDGFFALPALP 167
Query: 134 KKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------FTPSLAQRYEQLYQQ 187
           ++       YIG+E+     G    T       HL +        F P +++   ++   
Sbjct: 168 ERVAVVGAGYIGVELGGVINGLGAKT-------HLFEMFDAPLPSFDPMISETLVEVMNA 220
Query: 188 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNS 245
            G +    A  K +   +DG +  ++LEDG +   D ++  IG +P       E  G+ +
Sbjct: 221 EGPQLHTNAIPKAVVKNTDGSLT-LELEDGRSETVDCLIWAIGREPANDNINLEAAGVKT 279
Query: 246 SVGG-IQVDGQFRTRMPGIFAIGD 268
           +  G I VD    T + GI+A+GD
Sbjct: 280 NEKGYIVVDKYQNTNIEGIYAVGD 303

>pdb|1LVL|A Chain A, The Refined Structure Of Pseudomonas Putida Lipoamide Dehydrogenase Complexed With Nad+ At 2.45 Angstroms Resolution Length = 458

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 69/150 (46%), Gaps = 13/150 (8%)
Query: 143 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE 202
           YIG+E+  A        +++     +L   +   L     +  ++ G+    G S++  E
Sbjct: 181 YIGLELGIAYRKLGAQVSVVEARERILPT-YDSELTAPVAESLKKLGIALHLGHSVEGYE 239
Query: 203 AG----SDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGG--IQVDGQF 256
            G    +DG+   ++LE      AD +++ +G +P    F    L+  + G  I +D + 
Sbjct: 240 NGCLLANDGKGGQLRLE------ADRVLVAVGRRPRTKGFNLECLDLKMNGAAIAIDERC 293
Query: 257 RTRMPGIFAIGDVAAFPLKMYDRTARVEHV 286
           +T M  ++AIGDVA  P+  +   A+ E V
Sbjct: 294 QTSMHNVWAIGDVAGEPMLAHRAMAQGEMV 323

>pdb|3OC4|A Chain A, Crystal Structure Of A Pyridine Nucleotide-Disulfide Family Oxidoreductase From The Enterococcus Faecalis V583 Length = 452

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/221 (21%), Positives = 92/221 (41%), Gaps = 9/221 (4%)
Query: 52  TPEWYKEKGIEMIYQDPVTSIDIEKQTLI---TNSGKLLKYGSLIVATGCTASRFPEKI- 107
           T E  + + I+++    V + D+E Q +        +   Y  LI+ATG  AS+F  +I 
Sbjct: 64  TEEELRRQKIQLLLNREVVAXDVENQLIAWTRKEEQQWYSYDKLILATG--ASQFSTQIR 121
Query: 108 GGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENH 167
           G     +   + ++ A A +  LE ++         IG E     V  K    +     +
Sbjct: 122 GSQTEKLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGXEAIDFLVKXKKTVHVFESLEN 181
Query: 168 LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 227
           LL + F        ++  ++  V F    ++  +E  ++G V     ++   I  D+ + 
Sbjct: 182 LLPKYFDKEXVAEVQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQE---ISCDSGIF 238
Query: 228 GIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGD 268
            +   P ++  ++    +    I VD   +T +P +FAIGD
Sbjct: 239 ALNLHPQLAYLDKKIQRNLDQTIAVDAYLQTSVPNVFAIGD 279

>pdb|3URH|A Chain A, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 491

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 6/103 (5%)
Query: 177 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA---VKLEDGSTIDADTIVIGIGAKP 233
           +A++ ++   + G+ F  GA +       DG       VK  + +T+DA+ ++I  G KP
Sbjct: 241 VAKQLQRXLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKP 300
Query: 234 TVSPF--ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFP 273
           +       + G+   S G +++D  F+T + G++AIGDV   P
Sbjct: 301 STDGLGLAKAGVVLDSRGRVEIDRHFQTSIAGVYAIGDVVRGP 343

>pdb|3L8K|A Chain A, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From Sulfolobus Solfataricus Length = 466

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 14/182 (7%)
Query: 92  LIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA-KKXXXXXXXYIGMEVAA 150
           +I+A+G   ++        LPGV Y     D     +S  K  +        YIG+E+A+
Sbjct: 136 MIIASGAETAKLR------LPGVEYCLTSDDIFGYKTSFRKLPQDMVIIGAGYIGLEIAS 189
Query: 151 AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA 210
                 + T II   +  L  L    +      + + N +KF   + +  ++   D    
Sbjct: 190 IFRLMGVQTHIIEMLDRALITLEDQDIVNTLLSILKLN-IKF--NSPVTEVKKIKDDEYE 246
Query: 211 AV-KLEDGS--TIDADTIVIGIGAKPTVSPFER-VGLNSSVGGIQVDGQFRTRMPGIFAI 266
            +   +DGS  +I  +++V+  G +P +    R +GL+ S  GI VD   +T +P +FA 
Sbjct: 247 VIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGAREIGLSISKTGIVVDETMKTNIPNVFAT 306
Query: 267 GD 268
           GD
Sbjct: 307 GD 308

>pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile Length = 463

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/151 (22%), Positives = 70/151 (46%), Gaps = 7/151 (4%)
Query: 123 ADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 182
           +D   +  ++ K+       YIG+E+A     +  + T++  E+ LL + F P L+    
Sbjct: 156 SDGFFALQQQPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQ-FDPLLSATLA 214
Query: 183 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA-DTIVIGIGAKPTVSPF--E 239
           +     G++     ++  LE   D +   +  +DG+ ++  D+++  +G  P       E
Sbjct: 215 ENMHAQGIETHLEFAVAALE--RDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLE 272
Query: 240 RVGLN-SSVGGIQVDGQFRTRMPGIFAIGDV 269
             G+   S G +  D    T +PG++A+GD+
Sbjct: 273 AAGIEVQSNGMVPTDAYQNTNVPGVYALGDI 303

>pdb|4B1B|A Chain A, Crystal Structure Of Plasmodium Falciparum Oxidised Thioredoxin Reductase At 2.9 Angstrom Length = 542

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 84/203 (41%), Gaps = 24/203 (11%)
Query: 73  DIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK 132
           D+ K+  +T      KY  +++ATGC     P+ + G        ++++     I SL+K
Sbjct: 177 DLSKEETVTG-----KY--ILIATGCRP-HIPDDVEG-------AKELSITSDDIFSLKK 221
Query: 133 A-KKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK 191
              K       Y+ +E +        D T+      ++ R F    A + +   ++ GV 
Sbjct: 222 DPGKTLVVGASYVALECSGFLNSLGYDVTVAVRS--IVLRGFDQQCAVKVKLYMEEQGVM 279
Query: 192 FVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE----RVGLNSSV 247
           F  G   K L    D  +  V+  D ++   DT++  IG K  +         + +N S 
Sbjct: 280 FKNGILPKKLTKMDDKIL--VEFSDKTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKSN 337
Query: 248 GGIQVDGQFRTRMPGIFAIGDVA 270
             I  D    T +P IFA+GDVA
Sbjct: 338 NKIIADHLSCTNIPSIFAVGDVA 360

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	414
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	1e-99
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	2e-98
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	2e-04
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	3e-96
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	3e-95
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	1e-04
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	4e-95
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	4e-04
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	8e-95
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	2e-04
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	3e-61
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	8e-56
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	8e-05
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	4e-49
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	3e-48
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	1e-47
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	7e-46
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	2e-45
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	6e-45
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	4e-44
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	5e-44
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	8e-44
1yqz_A	438	Coenzyme A disulfide reductase; oxidoreductase; HE	2e-42
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	1e-40
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	7e-27
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	8e-27
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	1e-26
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	4e-26
4dna_A	463	Probable glutathione reductase; structural genomic	1e-25
1fec_A	490	Trypanothione reductase; redox-active center, oxid	1e-25
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	1e-24
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	7e-24
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	1e-22
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	1e-22
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	3e-22
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	9e-22
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	1e-21
4fk1_A	304	Putative thioredoxin reductase; structural genomic	3e-21
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	6e-21
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	1e-20
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	2e-07
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	2e-20
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	2e-20
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	5e-20
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	2e-19
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	3e-05
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	4e-19
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	7e-19
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	1e-18
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	6e-18
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	5e-07
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	8e-18
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	2e-17
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	2e-17
1ojt_A	482	Surface protein; redox-active center, glycolysis,	3e-17
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	4e-17
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	8e-17
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	2e-16
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	2e-16
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	3e-16
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	4e-16
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	8e-16
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	2e-15
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	2e-15
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	3e-15
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	8e-15
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	2e-14
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	4e-14
1fcd_A	401	Flavocytochrome C sulfide dehydrogenase (flavin- b	2e-13
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	7e-13
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	2e-11
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	3e-11
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	2e-10
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	5e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
3r9u_A	315	Thioredoxin reductase; structural genomics, center	1e-08
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	6e-08
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	7e-07
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	1e-06
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	1e-06
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	4e-06
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	5e-06
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	2e-04
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	3e-04
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	4e-04
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	7e-04

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* Length = 493

 Score =  304 bits (781), Expect = 1e-99
 Identities = 94/409 (22%), Positives = 163/409 (39%), Gaps = 40/409 (9%)

Query: 3   DGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER----QTPEWY-- 56
             R+ IVS++   PY RP L+K         P           +G ER    Q P +Y  
Sbjct: 36  GARVLIVSEDPELPYMRPPLSKELW--FSDDPNVTKTLRFKQWNGKERSIYFQPPSFYVS 93

Query: 57  -------KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKI 107
                  +  G+ ++    V  +D+    +  N G  + Y   ++ATG T       ++ 
Sbjct: 94  AQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRA 153

Query: 108 GGYLPG-VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAA----AVGWKLDTTII 162
           G  +       R + D  +L     + K + ++GGG++G E+A A    A     +   +
Sbjct: 154 GAEVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQL 213

Query: 163 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 222
           FPE   + ++    L+    +  ++ GVK +  A ++++          +KL+DG  ++ 
Sbjct: 214 FPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGV--SSGKLLIKLKDGRKVET 271

Query: 223 DTIVIGIGAKPTVSPFERVGL--NSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRT 280
           D IV  +G +P V   +  GL  +S  GG +V+ + + R   I+  GD A F      R 
Sbjct: 272 DHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQAR-SNIWVAGDAACFYDIKLGRR 330

Query: 281 ARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGET 340
            RVEH DHA  S +   + +  A    Y +   F+S +   +     V ++  G      
Sbjct: 331 -RVEHHDHAVVSGRLAGENMTGAAKP-YWHQSMFWSDLG-PD-----VGYEAIGLVDSSL 382

Query: 341 IEIGNFDPKIA-----TFWIDSGKLKGVLVESGSPEEFQLLPTLARSQP 384
             +G F    A     +    SG       E+ S      +P    + P
Sbjct: 383 PTVGVFAKATAQDNPKSATEQSGTGIRSESETESEASEITIPPSTPAVP 431

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* Length = 431

 Score =  299 bits (768), Expect = 2e-98
 Identities = 113/418 (27%), Positives = 189/418 (45%), Gaps = 29/418 (6%)

Query: 3   DGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIE 62
           +G + +V      P+  P L+K YL    K  A      T          P+ Y  + I+
Sbjct: 29  EGNIRLVGDATVIPHHLPPLSKAYL--AGKATAESLYLRT----------PDAYAAQNIQ 76

Query: 63  MIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIG--GYLPGVHYIRDV 120
           ++    VT+I+ ++Q +I + G+ L Y  L++ATG      P   G  G      Y+R +
Sbjct: 77  LLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPRPLPVASGAVGKANNFRYLRTL 136

Query: 121 ADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR 180
            DA+ +   L    ++VV+GGGYIG+EVAA A+   +  T++     +L+R+  P ++  
Sbjct: 137 EDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAF 196

Query: 181 YEQLYQQNGVKFVKGASIKNLE-AGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE 239
           YE L+++ GV    G  +   E +    +V AV  EDG+ + AD ++ GIG  P      
Sbjct: 197 YEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCELAS 256

Query: 240 RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKA 299
             GL     GI ++   +T  P I A+GD A F  ++YDR  R+E V +A + A+     
Sbjct: 257 AAGLQVD-NGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAI 315

Query: 300 LLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--ETIEIGNFD-PKIATFWID 356
           L        +  P+F+S  +E       +  +  G + G    I  G+   P  + F++ 
Sbjct: 316 LCGKVP-RDEAAPWFWSDQYE-----IGL--KMVGLSEGYDRIIVRGSLAQPDFSVFYLQ 367

Query: 357 SGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQAS-SVEEALEIARAALPVEAA 413
             ++  V      P EF     +   +  V+   L   S  ++E +  A+A L    A
Sbjct: 368 GDRVLAV-DTVNRPVEFNQSKQIITDRLPVEPNLLGDESVPLKEIIAAAKAELSSAPA 424

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* Length = 431

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 18/112 (16%)

Query: 136 VVVVGGGYIGMEVAAA--AVGWKLDTTIIFPENH------------LLQRLFTPSLAQRY 181
           VV+VG G  G+EVA    A GW+ +  ++                 L  +    SL  R 
Sbjct: 7   VVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRT 66

Query: 182 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 233
              Y    ++ + G  +  +          V L DG  +D D +V+  G +P
Sbjct: 67  PDAYAAQNIQLLGGTQVTAINRDR----QQVILSDGRALDYDRLVLATGGRP 114

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} Length = 404

 Score =  292 bits (751), Expect = 3e-96
 Identities = 106/392 (27%), Positives = 172/392 (43%), Gaps = 28/392 (7%)

Query: 3   DGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIE 62
            GR+ +++ E + PY+RP L+K YL            F             ++++++ IE
Sbjct: 26  PGRIALINDEKHLPYQRPPLSKAYL--KSGGDPNSLMFRP----------EKFFQDQAIE 73

Query: 63  MIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVAD 122
           +I  D + SID E + L+  SG  ++YG L++ATG             LP V Y+R + +
Sbjct: 74  LI-SDRMVSIDREGRKLLLASGTAIEYGHLVLATGARNRMLDVP-NASLPDVLYLRTLDE 131

Query: 123 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 182
           ++ L   +   K VVV+G G+IG+E AA A    L+  ++     ++ R+ TP ++  + 
Sbjct: 132 SEVLRQRMPDKKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARVVTPEISSYFH 191

Query: 183 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG 242
             +   G++   G     +      RV  V L DG+T+  D +V+G+G  P V      G
Sbjct: 192 DRHSGAGIRMHYGVRATEIA-AEGDRVTGVVLSDGNTLPCDLVVVGVGVIPNVEIAAAAG 250

Query: 243 LNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 302
           L ++  GI VD Q  T  P I AIGD A F    +  T RVE V +A   A+     L  
Sbjct: 251 LPTA-AGIIVDQQLLTSDPHISAIGDCALFESVRFGETMRVESVQNATDQARCVAARLT- 308

Query: 303 AQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGK 359
                YD  P+F+S   +      K+  Q  G   G  + +  G+      + F   +GK
Sbjct: 309 GDAKPYDGYPWFWSDQGD-----DKL--QIVGLTAGFDQVVIRGSVAERSFSAFCYKAGK 361

Query: 360 LKGVLVESGSPEEFQLLPTLARSQPFVDKAKL 391
           L G+        +      +      V   + 
Sbjct: 362 LIGI-ESVNRAADHVFGRKILPLDKSVTPEQA 392

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* Length = 408

 Score =  290 bits (745), Expect = 3e-95
 Identities = 97/409 (23%), Positives = 165/409 (40%), Gaps = 37/409 (9%)

Query: 3   DGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIE 62
            G + +V  EA  PY+RP L+K ++                     E+   +  +   +E
Sbjct: 32  QGLITVVGDEAERPYDRPPLSKDFM----------------AHGDAEKIRLDCKRAPEVE 75

Query: 63  MIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVAD 122
            +      S D +  T+  + G+ L YG+L++ATG      P  + G    VH +R + D
Sbjct: 76  WLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPT-LQGATMPVHTLRTLED 134

Query: 123 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 182
           A  + + L    ++++VGGG IG+E+AA A    +  +++  +  L+ R    +LA    
Sbjct: 135 ARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVA 194

Query: 183 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG 242
           + +   GV      S+      +      V L+DG+ I AD +V+GIG     +     G
Sbjct: 195 RYHAAQGVDLRFERSV------TGSVDGVVLLDDGTRIAADMVVVGIGVLANDALARAAG 248

Query: 243 LNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 302
           L     GI VD   RT  P ++A+GDV      +  R  R+E   +A+       + L+ 
Sbjct: 249 LACD-DGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVD 307

Query: 303 AQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-ETIEIGNFDP---KIATFWIDSG 358
                Y  LP+++S          ++  Q  G   G E I  G       K     +  G
Sbjct: 308 PTAPGYAELPWYWSDQGA-----LRI--QVAGLASGDEEIVRGEVSLDAPKFTLIELQKG 360

Query: 359 KLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQAS-SVEEALEIARA 406
           ++ G      +  +F  L  L       D+A L   +  + +      A
Sbjct: 361 RIVGA-TCVNNARDFAPLRRLLAVGAKPDRAALADPATDLRKLAAAVAA 408

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* Length = 408

 Score = 43.3 bits (103), Expect = 1e-04
 Identities = 22/108 (20%), Positives = 42/108 (38%), Gaps = 14/108 (12%)

Query: 136 VVVVGGGYIGMEVAAA--AVGWKLDTTIIFPENHL-LQR-------LFTPSLAQRYEQLY 185
           VVV+G G   +   A     G++   T++  E      R       +      +      
Sbjct: 10  VVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCK 69

Query: 186 QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 233
           +   V+++ G + ++ +  +      V L DG T+   T+V+  GA P
Sbjct: 70  RAPEVEWLLGVTAQSFDPQA----HTVALSDGRTLPYGTLVLATGAAP 113

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} Length = 410

 Score =  290 bits (744), Expect = 4e-95
 Identities = 104/392 (26%), Positives = 178/392 (45%), Gaps = 30/392 (7%)

Query: 3   DGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIE 62
           +GR+ ++  E + PY+RP+L+K  L    ++P  L                +WY E  I+
Sbjct: 27  EGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPIL-------------AEADWYGEARID 73

Query: 63  MIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVAD 122
           M+    VT++D++ +T+  + G  L   ++++ATG  A       G  LPGV  +R   D
Sbjct: 74  MLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRARTMALP-GSQLPGVVTLRTYGD 132

Query: 123 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 182
              L  S   A ++++VGGG IG EVA  A    L  TI+   + LL R+    +     
Sbjct: 133 VQVLRDSWTSATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRVLGRRIGAWLR 192

Query: 183 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG 242
            L  + GV+   G  +       +G++  V   DG +  AD+ +I +GA+P      + G
Sbjct: 193 GLLTELGVQVELGTGVVGFSG--EGQLEQVMASDGRSFVADSALICVGAEPADQLARQAG 250

Query: 243 LNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 302
           L     G+ VD    T   G+FA+GDVA++PL+   R   +E   +A++ A     A+L 
Sbjct: 251 LACD-RGVIVDHCGATLAKGVFAVGDVASWPLRAGGRR-SLETYMNAQRQAAAVAAAILG 308

Query: 303 AQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGK 359
                   LP  ++ +        ++  Q  GD  G  + +  G         F +   +
Sbjct: 309 KNVS-APQLPVSWTEIAG-----HRM--QMAGDIEGPGDFVSRGMPGSGAALLFRLQERR 360

Query: 360 LKGVLVESGSPEEFQLLPTLARSQPFVDKAKL 391
           ++ V V   +P +F L   L  ++  ++ A+L
Sbjct: 361 IQAV-VAVDAPRDFALATRLVEARAAIEPARL 391

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} Length = 410

 Score = 41.4 bits (98), Expect = 4e-04
 Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 17/111 (15%)

Query: 136 VVVVGGGYIGMEVAAA--AVGWKLDTTIIFPENHL-----------LQRLFTPSLAQRYE 182
           V ++G G  G   A A  A G++   ++I  E HL           L             
Sbjct: 5   VAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPILAEA 64

Query: 183 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 233
             Y +  +  + G  +  L+  +      + L+DG+T+ AD IVI  G++ 
Sbjct: 65  DWYGEARIDMLTGPEVTALDVQT----RTISLDDGTTLSADAIVIATGSRA 111

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} Length = 415

 Score =  289 bits (743), Expect = 8e-95
 Identities = 110/394 (27%), Positives = 186/394 (47%), Gaps = 29/394 (7%)

Query: 3   DGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIE 62
           +GR+ ++ +E   PYERP L+K YL    +K                    +++++K +E
Sbjct: 34  EGRVLVIGREPEIPYERPPLSKEYL--AREKTFERICIRP----------AQFWEDKAVE 81

Query: 63  MIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVAD 122
           M     V S+D    T+    G  ++YG LI ATG    R    +G  L GVH +R   D
Sbjct: 82  MKLGAEVVSLDPAAHTVKLGDGSAIEYGKLIWATGGDPRRLSC-VGADLAGVHAVRTKED 140

Query: 123 ADALISSLEK-AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRY 181
           AD L++ L+  AK  VV+GGGYIG+E AA    + ++ T++     +L R+   +L++ Y
Sbjct: 141 ADRLMAELDAGAKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEFY 200

Query: 182 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERV 241
           +  ++ +GV    GA++  +E G   +V  V+++DGS I AD +++GIG  P V      
Sbjct: 201 QAEHRAHGVDLRTGAAMDCIE-GDGTKVTGVRMQDGSVIPADIVIVGIGIVPCVGALISA 259

Query: 242 GLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYD-RTARVEHVDHARQSAQHCIKAL 300
           G +    G+ VD   RT +  ++AIGD AA      D    R+E V +A   A    K +
Sbjct: 260 GASGG-NGVDVDEFCRTSLTDVYAIGDCAAHANDFADGAVIRLESVQNANDMATAAAKDI 318

Query: 301 LSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--ETIEIGNFD-PKIATFWIDS 357
             A    Y   P+F+S  ++      K+  Q  G + G    +  G+      +  ++  
Sbjct: 319 CGAPV-PYKATPWFWSNQYD-----LKL--QTVGLSTGHDNAVLRGDPATRSFSVVYLKG 370

Query: 358 GKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKL 391
           GK+  +       +++     L  ++  +   +L
Sbjct: 371 GKVVAL-DCVNMVKDYVQGKKLVEARAQIAPEQL 403

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} Length = 415

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 18/112 (16%)

Query: 136 VVVVGGGYIGMEVAAA--AVGWKLDTTIIFPENH------------LLQRLFTPSLAQRY 181
           VV+VG G+ G + A A    G++    +I  E              L +      +  R 
Sbjct: 12  VVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAREKTFERICIRP 71

Query: 182 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 233
            Q ++   V+   GA + +L+  +      VKL DGS I+   ++   G  P
Sbjct: 72  AQFWEDKAVEMKLGAEVVSLDPAA----HTVKLGDGSAIEYGKLIWATGGDP 119

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* Length = 384

 Score =  202 bits (515), Expect = 3e-61
 Identities = 67/313 (21%), Positives = 118/313 (37%), Gaps = 28/313 (8%)

Query: 2   ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE-WYKEKG 60
            +  L +++ +    Y +P L+ G+    +K    L               P    ++  
Sbjct: 28  GETPLLMITADDGRSYSKPMLSTGFS--KNKDADGL-----------AMAEPGAMAEQLN 74

Query: 61  IEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDV 120
             ++    VT ID   Q +     ++ +Y  L++A G    R P + G     ++ I D+
Sbjct: 75  ARILTHTRVTGIDPGHQRIWIGEEEV-RYRDLVLAWGAEPIRVPVE-GDAQDALYPINDL 132

Query: 121 ADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR 180
            D      +    ++V+++G G IG E A           ++ P   ++  L  P+ A+ 
Sbjct: 133 EDYARFRQAAAGKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKA 192

Query: 181 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER 240
            +   +  GV+F  G  + +L+    G      L DG  I  D +V  +G +P       
Sbjct: 193 VQAGLEGLGVRFHLGPVLASLKK--AGEGLEAHLSDGEVIPCDLVVSAVGLRPRTELAFA 250

Query: 241 VGLNSSVG-GIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKA 299
            GL  +V  GI VD   RT    I+A+GD A              +V      A+   + 
Sbjct: 251 AGL--AVNRGIVVDRSLRTSHANIYALGDCAEVDGLNL------LYVMPLMACARALAQT 302

Query: 300 LLSAQTHTYDYLP 312
           L    +    Y P
Sbjct: 303 LAGNPS-QVAYGP 314

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} Length = 385

 Score =  187 bits (478), Expect = 8e-56
 Identities = 70/395 (17%), Positives = 133/395 (33%), Gaps = 55/395 (13%)

Query: 3   DGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIE 62
              + +++ E Y PY RP L    +   +K    +                +WY++  I+
Sbjct: 32  CDDITMINSEKYLPYYRPRLN--EIIAKNKSIDDIL-IKK----------NDWYEKNNIK 78

Query: 63  MIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVAD 122
           +I  +  TSID   + +   SG+ +KY  LI+A+G  A++    +      +  +    D
Sbjct: 79  VITSEFATSIDPNNKLVTLKSGEKIKYEKLIIASGSIANKIK--VPH-ADEIFSLYSYDD 135

Query: 123 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 182
           A  +    +   K  ++GGG +G+E+A A +      +I     + L+R          +
Sbjct: 136 ALKIKDECKNKGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLERQLDRDGGLFLK 195

Query: 183 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG 242
               + G+K    ++ +               E G  I +  ++  +G KP +   +   
Sbjct: 196 DKLDRLGIKIYTNSNFE---------------EMGDLIRSSCVITAVGVKPNLDFIKDTE 240

Query: 243 LNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 302
           + S   GI V+    T +  I+A GDVA F  K                +  +       
Sbjct: 241 IASK-RGILVNDHMETSIKDIYACGDVAEFYGKNPGLINIA--NKQGEVAGLN-----AC 292

Query: 303 AQTHTYD-YLPYFYSRVFEYE-GSPRKVWWQFFGDNVGETIEIGNFDPKIATF---WIDS 357
            +  +Y   +P    +V      S         GD             +   +    +  
Sbjct: 293 GEDASYSEIIPSPILKVSGISIIS--------CGDIENNKPSKVFRSTQEDKYIVCMLKE 344

Query: 358 GKLKG-VLVESGSPEEFQLLPTLARSQPFVDKAKL 391
            K+    ++  G       L     S    D    
Sbjct: 345 NKIDAAAVI--GDVSLGTKLKKAIDSSKSFDNISS 377

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} Length = 385

 Score = 43.4 bits (103), Expect = 8e-05
 Identities = 23/123 (18%), Positives = 49/123 (39%), Gaps = 15/123 (12%)

Query: 128 SSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH------LLQRLFT-----PS 176
               K+ K++++G G  G   A AA+G   D T+I  E +       L  +         
Sbjct: 4   HHHHKSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDD 63

Query: 177 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 236
           +  +    Y++N +K +      +++   + ++  V L+ G  I  + ++I  G+     
Sbjct: 64  ILIKKNDWYEKNNIKVITSEFATSIDP--NNKL--VTLKSGEKIKYEKLIIASGSIANKI 119

Query: 237 PFE 239
              
Sbjct: 120 KVP 122

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 367

 Score =  169 bits (431), Expect = 4e-49
 Identities = 68/276 (24%), Positives = 120/276 (43%), Gaps = 29/276 (10%)

Query: 3   DGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIE 62
              + ++ KE    Y +P L+  +         RL              + +WY+++GIE
Sbjct: 30  TYEVTVIDKEPVPYYSKPMLS--HYIAGFIPRNRL-----------FPYSLDWYRKRGIE 76

Query: 63  MIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVAD 122
           +   +    ID  ++ +IT  G++  Y +L++ATG  A      I G    +  +R + D
Sbjct: 77  IRLAEEAKLIDRGRKVVITEKGEV-PYDTLVLATGARAREPQ--IKG-KEYLLTLRTIFD 132

Query: 123 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 182
           AD +  S+E + + +++GGG+IG+E+A           +I      L       L+   +
Sbjct: 133 ADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG--LDEELSNMIK 190

Query: 183 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG 242
            + ++ GVKF   + +   EA  +G      L +   I+    +  IG  P V    R G
Sbjct: 191 DMLEETGVKFFLNSELL--EANEEGV-----LTNSGFIEGKVKICAIGIVPNVDLARRSG 243

Query: 243 LNSSVG-GIQVDGQFRTRMPGIFAIGDVAAFPLKMY 277
           +    G GI +D  FRT    ++AIGD A +   + 
Sbjct: 244 I--HTGRGILIDDNFRTSAKDVYAIGDCAEYSGIIA 277

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} Length = 452

 Score =  169 bits (431), Expect = 3e-48
 Identities = 63/229 (27%), Positives = 95/229 (41%), Gaps = 14/229 (6%)

Query: 51  QTPEWYKEKGIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFPE 105
            +PE     G  +  +  VT++D E +T     LITN  K   Y  LI+ TG   +  P 
Sbjct: 63  SSPEELSNLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTV-PP 121

Query: 106 KIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 165
             G     V+  ++  DA  L     KAK + ++G GYIG E+A A      +  +I   
Sbjct: 122 IPGIDSSRVYLCKNYNDAKKLFEEAPKAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGH 181

Query: 166 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 225
             +L + F         + Y+ +GV  V G+ +   E   D  +      DG  I +D  
Sbjct: 182 ERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFE-EVDDEIITK-TLDGKEIKSDIA 239

Query: 226 VIGIGAKPTVSPFE---RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 271
           ++ IG +P     +    +  N   G I  D    +    IFA GD AA
Sbjct: 240 ILCIGFRPNTELLKGKVAMLDN---GAIITDEYMHSSNRDIFAAGDSAA 285

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} Length = 452

 Score =  167 bits (426), Expect = 1e-47
 Identities = 48/227 (21%), Positives = 93/227 (40%), Gaps = 13/227 (5%)

Query: 51  QTPEWYKEKGIEMIYQDPVTSIDIEKQTLI---TNSGKLLKYGSLIVATGCTASRFPEKI 107
            T E  + + I+++    V ++D+E Q +        +   Y  LI+ATG +      + 
Sbjct: 63  ITEEELRRQKIQLLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQFSTQIR- 121

Query: 108 GGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH 167
           G     +   + ++ A A +  LE ++ V V+G G IGME     V  K    +     +
Sbjct: 122 GSQTEKLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLEN 181

Query: 168 LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 227
           LL + F   +    ++  ++  V F    ++  +E         +       I  D+ + 
Sbjct: 182 LLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIE--ETANGIVL-ETSEQEISCDSGIF 238

Query: 228 GIGAKPTVSPFE---RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 271
            +   P ++  +   +  L+     I VD   +T +P +FAIGD  +
Sbjct: 239 ALNLHPQLAYLDKKIQRNLD---QTIAVDAYLQTSVPNVFAIGDCIS 282

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* Length = 447

 Score =  163 bits (414), Expect = 7e-46
 Identities = 55/231 (23%), Positives = 95/231 (41%), Gaps = 17/231 (7%)

Query: 51  QTPEWYKEKGIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFPE 105
            T E  + +G+ +     +T+I  ++       L++   ++  Y  LI++ G        
Sbjct: 61  MTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDI 120

Query: 106 KIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF 163
             G  L  ++ +R    A  L       +   VVV+G GYIG+E A A        T+I 
Sbjct: 121 P-GKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVID 179

Query: 164 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 223
             +  L             +  + N +    G +++  E   DGRV  V + D +  DAD
Sbjct: 180 ILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYE--GDGRVQKV-VTDKNAYDAD 236

Query: 224 TIVIGIGAKPTVSPFE---RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 271
            +V+ +G +P  +  +    +  N   G I+ D   RT  P +FA+GD   
Sbjct: 237 LVVVAVGVRPNTAWLKGTLELHPN---GLIKTDEYMRTSEPDVFAVGDATL 284

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Length = 472

 Score =  162 bits (412), Expect = 2e-45
 Identities = 70/232 (30%), Positives = 116/232 (50%), Gaps = 15/232 (6%)

Query: 51  QTPEWYKEK-GIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFP 104
           + PE+++    +E + +    +ID    T     L T   + LKY  L++A G  A+R P
Sbjct: 70  RDPEFFRINKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPP 129

Query: 105 EKIGGY-LPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVG-WKLDTT 160
             + G  L GV  + ++ +A+ +  ++   +  K V+VGGG+IG+E+A +    W +DTT
Sbjct: 130 --VEGMDLAGVTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTT 187

Query: 161 IIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTI 220
           ++   + ++    + SL+Q      ++N V    G  +  LE G +G+VA V + D  T+
Sbjct: 188 VVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLE-GENGKVARV-ITDKRTL 245

Query: 221 DADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAA 271
           DAD +++  G  P        GL     G I VD + RT  P IFA GD   
Sbjct: 246 DADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRTSDPDIFAGGDCVT 297

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* Length = 490

 Score =  161 bits (410), Expect = 6e-45
 Identities = 56/239 (23%), Positives = 106/239 (44%), Gaps = 24/239 (10%)

Query: 51  QTPEWYKEKGIEMIYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGCTASRFP--- 104
              E  +  G ++  + PV SID + +T   L+     +  Y  LI ATG      P   
Sbjct: 97  SDKEELESLGAKVYMESPVQSIDYDAKTVTALVDGKNHVETYDKLIFATGSQPILPPIKG 156

Query: 105 -------EKIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGW 155
                   +    L  + +++   ++  +I+ LE    K+V VVG GYIG+E+A A    
Sbjct: 157 AEIKEGSLEFEATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRK 216

Query: 156 KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE 215
             +  +I   +  L   +   L     +  +++G++   G ++K +    +G+V  + + 
Sbjct: 217 GKEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVKEVA--GNGKVEKI-IT 273

Query: 216 DGSTIDADTIVIGIGAKPTVSPFE---RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 271
           D +  D D +++ +G +P  +       +  N   G   V+ +  T +PG++AIGD A 
Sbjct: 274 DKNEYDVDMVILAVGFRPNTTLGNGKIDLFRN---GAFLVNKRQETSIPGVYAIGDCAT 329

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588

 Score =  160 bits (408), Expect = 4e-44
 Identities = 57/229 (24%), Positives = 105/229 (45%), Gaps = 14/229 (6%)

Query: 51  QTPEWYKEK-GIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFP 104
           QT E   ++  +++     V  I+ E++T     + TN      Y  LI++ G       
Sbjct: 97  QTVERMSKRFNLDIRVLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAKPIVPS 156

Query: 105 EKIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTII 162
                    +  +R+V D D + + ++  K +   V+GGG+IG+E+        ++ T++
Sbjct: 157 IPGIEEAKALFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMVENLRERGIEVTLV 216

Query: 163 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 222
              N ++       +A    +  + + V+ V    +  LE   +G V  V+L+ GS I  
Sbjct: 217 EMANQVMPP-IDYEMAAYVHEHMKNHDVELVFEDGVDALE--ENGAV--VRLKSGSVIQT 271

Query: 223 DTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVA 270
           D +++ IG +P  S  +  GL     G I+V+ +F+T  P I+AIGD  
Sbjct: 272 DMLILAIGVQPESSLAKGAGLALGVRGTIKVNEKFQTSDPHIYAIGDAI 320

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} Length = 449

 Score =  158 bits (401), Expect = 5e-44
 Identities = 57/226 (25%), Positives = 98/226 (43%), Gaps = 10/226 (4%)

Query: 51  QTPEWYKEK-GIEMIYQDPVTSIDIEKQT-LITNSGKLLKYGSLIVATGCTASRFPEKIG 108
             PE + +K GI++     V  +D            K  ++  L+ A G +    P   G
Sbjct: 63  YPPEVFIKKRGIDLHLNAEVIEVDTGYVRVRENGGEKSYEWDYLVFANGASPQV-PAIEG 121

Query: 109 GYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 166
             L GV       DA A+   +E  K + VV++GGGYIG+E+A A      + T+I    
Sbjct: 122 VNLKGVFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGE 181

Query: 167 HLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 226
            +L+R F   +    E+   +  V          +E   + RV  V + D     A+ ++
Sbjct: 182 RVLRRSFDKEVTDILEEKL-KKHVNLRLQEITMKIE--GEERVEKV-VTDAGEYKAELVI 237

Query: 227 IGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAA 271
           +  G KP +   +++G+     G I  + + +T +  ++A GDVA 
Sbjct: 238 LATGIKPNIELAKQLGVRIGETGAIWTNEKMQTSVENVYAAGDVAE 283

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* Length = 480

 Score =  158 bits (401), Expect = 8e-44
 Identities = 57/230 (24%), Positives = 111/230 (48%), Gaps = 14/230 (6%)

Query: 51  QTPEWYKEK-GIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFP 104
           +  + +++K GI+   +  VT +D EK+        T       Y  L++ATG       
Sbjct: 97  RNVKTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMPE 156

Query: 105 EKIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTII 162
            + G  L GVH ++ + DA+ ++ +LE  K + V ++GGG IG+E+A   V       +I
Sbjct: 157 WE-GRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMI 215

Query: 163 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 222
              +H+   ++   +A+   +   ++ ++ +   ++K  +   + RV AV+  D  T  A
Sbjct: 216 ERNDHIG-TIYDGDMAEYIYKEADKHHIEILTNENVKAFK--GNERVEAVET-DKGTYKA 271

Query: 223 DTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAA 271
           D +++ +G KP     E   +  +  G I+V+   +T +  ++A GD A 
Sbjct: 272 DLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQTNVQDVYAAGDCAT 321

>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A {Staphylococcus aureus} Length = 438

 Score =  153 bits (389), Expect = 2e-42
 Identities = 55/230 (23%), Positives = 97/230 (42%), Gaps = 20/230 (8%)

Query: 51  QTPEWYKEK-GIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFP 104
            TPE + ++  I +     V +I+ E+QT       TN      Y  LI++ G +     
Sbjct: 62  YTPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGAS----A 117

Query: 105 EKIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTII 162
             +G        +R++ D DA+   ++  +  KV+VVG GY+ +EV        L  T+I
Sbjct: 118 NSLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 177

Query: 163 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 222
              + +  +L    + Q       +  + +     I  +  G++     +  + G     
Sbjct: 178 HRSDKIN-KLMDADMNQPILDELDKREIPYRLNEEINAIN-GNE-----ITFKSGKVEHY 230

Query: 223 DTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAA 271
           D I+ G+G  P     E   +     G I V+ +F T +P I+AIGD+A 
Sbjct: 231 DMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIAT 280

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565

 Score =  150 bits (382), Expect = 1e-40
 Identities = 56/249 (22%), Positives = 107/249 (42%), Gaps = 32/249 (12%)

Query: 51  QTPEWYKEK-GIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFP 104
           QTPE +K +  +E+  +  V +ID   +      L+  S     Y +L+++ G      P
Sbjct: 62  QTPESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPP 121

Query: 105 EKIGGY-LPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTI 161
             I G   P  H +R++ D D ++ +++    +   VVGGG+IG+E+  +     + TT+
Sbjct: 122 --IPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTL 179

Query: 162 IFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE------------------A 203
           +   + ++       +A    Q  +  GV    G ++  +                    
Sbjct: 180 LELADQVMTP-VDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQ 238

Query: 204 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPG 262
              G ++   L +G  ++ D +++ IG +P        GL    +GGI+V+   +T  P 
Sbjct: 239 HIKGHLSLT-LSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQTSDPA 297

Query: 263 IFAIGDVAA 271
           I+A+GD   
Sbjct: 298 IYAVGDAVE 306

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 500

 Score =  111 bits (279), Expect = 7e-27
 Identities = 44/211 (20%), Positives = 84/211 (39%), Gaps = 25/211 (11%)

Query: 93  IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKAKKVVVVGGGYIGME 147
           ++A G      P      + G+            ISS     ++++KK+ +VG GYI +E
Sbjct: 146 LIAVGNKPVFPP------VKGIENT---------ISSDEFFNIKESKKIGIVGSGYIAVE 190

Query: 148 VAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG 207
           +        +D+ I    N +L R F  S+    E   ++N +  V  A +  ++  SD 
Sbjct: 191 LINVIKRLGIDSYIFARGNRIL-RKFDESVINVLENDMKKNNINIVTFADVVEIKKVSDK 249

Query: 208 RVAAVKLEDGSTI-DADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQVDGQFRTRMPGIF 264
            ++ + L DG      D ++  +G  P       E++ + ++   I VD   RT +  I+
Sbjct: 250 NLS-IHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVETNNNYIVVDENQRTSVNNIY 308

Query: 265 AIGDVAAFPLKMYDRTARVEHVDHARQSAQH 295
           A+GD              +  + +  +    
Sbjct: 309 AVGDCCMVKKSKEIEDLNLLKLYNEERYLNK 339

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Length = 484

 Score =  110 bits (278), Expect = 8e-27
 Identities = 52/200 (26%), Positives = 90/200 (45%), Gaps = 28/200 (14%)

Query: 80  ITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA- 133
           ++ +G+ +    +++ATG             + G             ++S     LEK  
Sbjct: 146 LSVTGERISAEKILIATGAKIVSNSA-----IKGSDLC---------LTSNEIFDLEKLP 191

Query: 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 193
           K +V+VGGGYIG+E A    G  + TT++   + +L R F   L Q         G+  +
Sbjct: 192 KSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLIL-RNFDYDLRQLLNDAMVAKGISII 250

Query: 194 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVG--LNSSVGG 249
             A++  +++  +     V L +G TI AD +++  G  P  +    ER G  +N   G 
Sbjct: 251 YEATVSQVQSTENCYN--VVLTNGQTICADRVMLATGRVPNTTGLGLERAGVKVNEF-GA 307

Query: 250 IQVDGQFRTRMPGIFAIGDV 269
           + VD +  T +  I+A+GDV
Sbjct: 308 VVVDEKMTTNVSHIWAVGDV 327

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Length = 450

 Score =  109 bits (276), Expect = 1e-26
 Identities = 52/187 (27%), Positives = 80/187 (42%), Gaps = 28/187 (14%)

Query: 93  IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 146
           ++ATG   S  P+     +PGV Y          I S     L    ++V VVG GYIG+
Sbjct: 136 LIATGGRPSH-PD-----IPGVEYG---------IDSDGFFALPALPERVAVVGAGYIGV 180

Query: 147 EVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD 206
           E+     G    T +    +  L   F P +++   ++    G +    A  K +   +D
Sbjct: 181 ELGGVINGLGAKTHLFEMFDAPL-PSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTD 239

Query: 207 GRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVG--LNSSVGGIQVDGQFRTRMPG 262
           G +  ++LEDG +   D ++  IG +P       E  G   N   G I VD    T + G
Sbjct: 240 GSLT-LELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEK-GYIVVDKYQNTNIEG 297

Query: 263 IFAIGDV 269
           I+A+GD 
Sbjct: 298 IYAVGDN 304

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* Length = 495

 Score =  109 bits (274), Expect = 4e-26
 Identities = 53/190 (27%), Positives = 86/190 (45%), Gaps = 31/190 (16%)

Query: 93  IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 146
           ++ATG      P      +PG+ +          ISS     L +  ++V+ VGGG+I +
Sbjct: 160 LLATGSWPQM-PA-----IPGIEHC---------ISSNEAFYLPEPPRRVLTVGGGFISV 204

Query: 147 EVA---AAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 203
           E A    A        T+ +  N +L R F  ++ +   +    NG++ +   +   +  
Sbjct: 205 EFAGIFNAYKPPGGKVTLCYRNNLIL-RGFDETIREEVTKQLTANGIEIMTNENPAKVSL 263

Query: 204 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVG--LNSSVGGIQVDGQFRTR 259
            +DG    V  E G T+D D +++ IG  P  +      VG  L    GG+QVD   RT 
Sbjct: 264 NTDGSKH-VTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPK-GGVQVDEFSRTN 321

Query: 260 MPGIFAIGDV 269
           +P I+AIGD+
Sbjct: 322 VPNIYAIGDI 331

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} Length = 463

 Score =  107 bits (270), Expect = 1e-25
 Identities = 51/200 (25%), Positives = 86/200 (43%), Gaps = 27/200 (13%)

Query: 80  ITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA- 133
           +  SGK +    +++A G   S   + +    PG             I+S     L    
Sbjct: 125 LLASGKTVTAERIVIAVGGHPSP-HDAL----PGHELC---------ITSNEAFDLPALP 170

Query: 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 193
           + +++ GGGYI +E A    G  + TT+I+    +L   F   + +      ++ G++ +
Sbjct: 171 ESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEIL-SRFDQDMRRGLHAAMEEKGIRIL 229

Query: 194 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVG--LNSSVGG 249
               I+++ A +DGR           I AD +++ +G  P  +    E  G   N   G 
Sbjct: 230 CEDIIQSVSADADGRRV-ATTMKHGEIVADQVMLALGRMPNTNGLGLEAAGVRTNEL-GA 287

Query: 250 IQVDGQFRTRMPGIFAIGDV 269
           I VD   RT  PGI+A+GDV
Sbjct: 288 IIVDAFSRTSTPGIYALGDV 307

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* Length = 490

 Score =  107 bits (270), Expect = 1e-25
 Identities = 47/190 (24%), Positives = 79/190 (41%), Gaps = 31/190 (16%)

Query: 93  IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 146
           ++ATG             + G             I+S     L++A K+ + VGGGYI +
Sbjct: 156 LLATGSWPQH-LG-----IEGDDLC---------ITSNEAFYLDEAPKRALCVGGGYISI 200

Query: 147 EVA---AAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 203
           E A    A         + +  + +L R F   L ++  +  + NG+      +   +  
Sbjct: 201 EFAGIFNAYKARGGQVDLAYRGDMIL-RGFDSELRKQLTEQLRANGINVRTHENPAKVTK 259

Query: 204 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVG--LNSSVGGIQVDGQFRTR 259
            +DG    V  E G+  D D +++ IG  P       E+ G  +  + G I+VD   +T 
Sbjct: 260 NADGTRH-VVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKN-GAIKVDAYSKTN 317

Query: 260 MPGIFAIGDV 269
           +  I+AIGDV
Sbjct: 318 VDNIYAIGDV 327

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} Length = 479

 Score =  104 bits (263), Expect = 1e-24
 Identities = 57/187 (30%), Positives = 81/187 (43%), Gaps = 26/187 (13%)

Query: 93  IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 146
           +VATG  A   PE I    PG               S     LE+  KKVVVVG GYIG+
Sbjct: 153 LVATGGKAIF-PENI----PGFELG---------TDSDGFFRLEEQPKKVVVVGAGYIGI 198

Query: 147 EVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD 206
           E+A    G   +T ++     +L R F   +       Y + G+   K + I  +E   +
Sbjct: 199 ELAGVFHGLGSETHLVIRGETVL-RKFDECIQNTITDHYVKEGINVHKLSKIVKVEKNVE 257

Query: 207 GRVAAVKLEDGSTI-DADTIVIGIGAKPTVS-PFERVG--LNSSVGGIQVDGQFRTRMPG 262
                + + D  +I D D ++  IG K  +    E VG  LNS    I  D    T +P 
Sbjct: 258 TDKLKIHMNDSKSIDDVDELIWTIGRKSHLGMGSENVGIKLNSH-DQIIADEYQNTNVPN 316

Query: 263 IFAIGDV 269
           I+++GDV
Sbjct: 317 IYSLGDV 323

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* Length = 463

 Score =  102 bits (256), Expect = 7e-24
 Identities = 45/187 (24%), Positives = 80/187 (42%), Gaps = 28/187 (14%)

Query: 93  IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 146
           ++ATG      P      LPG             I+S     L++  K+V ++G GYIG+
Sbjct: 135 VIATGGRPIV-PR-----LPGAELG---------ITSDGFFALQQQPKRVAIIGAGYIGI 179

Query: 147 EVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD 206
           E+A     +  + T++  E+ LL   F P L+    +     G++     ++  LE  + 
Sbjct: 180 ELAGLLRSFGSEVTVVALEDRLL-FQFDPLLSATLAENMHAQGIETHLEFAVAALERDAQ 238

Query: 207 GRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVG--LNSSVGGIQVDGQFRTRMPG 262
           G    V  +       D+++  +G  P       E  G  + S+ G +  D    T +PG
Sbjct: 239 GTTL-VAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSN-GMVPTDAYQNTNVPG 296

Query: 263 IFAIGDV 269
           ++A+GD+
Sbjct: 297 VYALGDI 303

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* Length = 483

 Score = 98.4 bits (246), Expect = 1e-22
 Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 13/150 (8%)

Query: 129 SLEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY 185
           SL++   K +VVG GYIG+E A     +G   + T++   + +L R F   +A+      
Sbjct: 182 SLDREPGKTLVVGAGYIGLECAGFLKGLG--YEPTVMV-RSIVL-RGFDQQMAELVAASM 237

Query: 186 QQNGVKFVKGASIKNLEAGSDGRVAA----VKLEDGSTIDADTIVIGIGAKPTVSPF--E 239
           ++ G+ F++     ++E   DG++      V+  + S    DT++  IG K  V      
Sbjct: 238 EERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLP 297

Query: 240 RVGLNSSVGGIQVDGQFRTRMPGIFAIGDV 269
             G+      I VD Q  T +  I+A+GD+
Sbjct: 298 NAGVTVQKDKIPVDSQEATNVANIYAVGDI 327

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* Length = 488

 Score = 98.4 bits (246), Expect = 1e-22
 Identities = 50/192 (26%), Positives = 82/192 (42%), Gaps = 31/192 (16%)

Query: 93  IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 146
           ++ATG       +     + G          +  I+S     L+++  K +VVG  Y+ +
Sbjct: 152 VIATGGRPRYPTQ-----VKG--------ALEYGITSDDIFWLKESPGKTLVVGASYVAL 198

Query: 147 EVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD 206
           E A    G  LDTT++     L  R F   ++    +  + +G +F+KG    +++    
Sbjct: 199 ECAGFLTGIGLDTTVMMRSIPL--RGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKLPT 256

Query: 207 GRVAAVKLEDGS-----TIDADTIVIGIGAKPTVSPF--ERVG--LNSSVGGIQVDGQFR 257
            ++  V  ED +     T   DT++  IG  P       E+ G   N     I VD Q  
Sbjct: 257 NQLQ-VTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEA 315

Query: 258 TRMPGIFAIGDV 269
           T +P I+AIGDV
Sbjct: 316 TSVPHIYAIGDV 327

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... Length = 478

 Score = 97.2 bits (243), Expect = 3e-22
 Identities = 51/209 (24%), Positives = 89/209 (42%), Gaps = 35/209 (16%)

Query: 80  ITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA- 133
           I  SGK      +++ATG   S  P +    +PG             I+S     LE+  
Sbjct: 140 IEVSGKKYTAPHILIATGGMPST-PHESQ--IPGASLG---------ITSDGFFQLEELP 187

Query: 134 KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK 191
            + V+VG GYI +E+A   +A+G    T+++   + +L R F   ++    +  +  GV+
Sbjct: 188 GRSVIVGAGYIAVEMAGILSALG--SKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVE 244

Query: 192 FVKGASIKNLEAGSDGRVAAV-------KLEDGSTIDADTIVIGIGAKPTVSPF--ERVG 242
            +K + +K ++    G   ++               D D ++  IG  P        ++G
Sbjct: 245 VLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLG 304

Query: 243 --LNSSVGGIQVDGQFRTRMPGIFAIGDV 269
              +   G I VD    T + GI+A+GDV
Sbjct: 305 IQTDDK-GHIIVDEFQNTNVKGIYAVGDV 332

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* Length = 523

 Score = 96.2 bits (240), Expect = 9e-22
 Identities = 46/200 (23%), Positives = 87/200 (43%), Gaps = 19/200 (9%)

Query: 83  SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK--AKKVVVVG 140
           +GK+ K  +LI+A G             +PGV+       A  +   L+      VVVVG
Sbjct: 169 AGKVFKAKNLILAVGAGPGTLD------VPGVNAKGVFDHATLVEE-LDYEPGSTVVVVG 221

Query: 141 GGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 198
           G    +E      A G +  T ++     L   +             ++ G++ + G+++
Sbjct: 222 GSKTAVEYGCFFNATGRR--TVMLVRTEPLK-LIKDNETRAYVLDRMKEQGMEIISGSNV 278

Query: 199 KNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSPF-ERVGLN-SSVGGIQVD 253
             +E  ++GRV AV          I+ D + +G+G +P  +   + +GL+    G + V+
Sbjct: 279 TRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAKILGLDLGPKGEVLVN 338

Query: 254 GQFRTRMPGIFAIGDVAAFP 273
              +T +P ++A+GD+   P
Sbjct: 339 EYLQTSVPNVYAVGDLIGGP 358

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Length = 499

 Score = 95.7 bits (239), Expect = 1e-21
 Identities = 49/216 (22%), Positives = 83/216 (38%), Gaps = 37/216 (17%)

Query: 69  VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 128
            T+ D        +         ++VATG +           LP         D + +++
Sbjct: 133 ATAADGSTSEHEADV--------VLVATGASPRI--------LPSAQP-----DGERILT 171

Query: 129 S-----LEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQR 180
                 L+     ++VVG G  G E       +G  +  T++  ++H+L        A  
Sbjct: 172 WRQLYDLDALPDHLIVVGSGVTGAEFVDAYTELG--VPVTVVASQDHVLP-YEDADAALV 228

Query: 181 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF-- 238
            E+ + + GV+  K A   ++     G    V + DG T++    ++ IG+ P  S    
Sbjct: 229 LEESFAERGVRLFKNARAASVTRTGAG--VLVTMTDGRTVEGSHALMTIGSVPNTSGLGL 286

Query: 239 ERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDVAAFP 273
           ERVG+    G  + VD   RT   GI+A GD     
Sbjct: 287 ERVGIQLGRGNYLTVDRVSRTLATGIYAAGDCTGLL 322

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* Length = 304

 Score = 92.2 bits (230), Expect = 3e-21
 Identities = 36/228 (15%), Positives = 68/228 (29%), Gaps = 34/228 (14%)

Query: 60  GIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGV-- 114
                Y+  V  I  +      ++T          +++ATG     FP      +P V  
Sbjct: 74  PSVHYYEKTVVMITKQSTGLFEIVTKDHTKYLAERVLLATGMQE-EFPS-----IPNVRE 127

Query: 115 HYIRDVA-----DADALISSLEKAKKVVVVGGGYIG-MEVAAAAVGWKLDTTIIFPENHL 168
           +Y + +      D         K + ++++       + +      W  D  I       
Sbjct: 128 YYGKSLFSCPYCDGW-----ELKDQPLIIISENEDHTLHMTKLVYNWSTDLVIATN---- 178

Query: 169 LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG 228
                   L+Q          +  +  + I+ L+ G  G +  V+   G  I+     I 
Sbjct: 179 -----GNELSQTIMDELSNKNIPVITES-IRTLQ-GEGGYLKKVEFHSGLRIERAGGFIV 231

Query: 229 IGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 275
                     E++G    S G   +D   RT    I+  G+       
Sbjct: 232 PTFFRPNQFIEQLGCELQSNGTFVIDDFGRTSEKNIYLAGETTTQGPS 279

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* Length = 519

 Score = 93.8 bits (234), Expect = 6e-21
 Identities = 53/197 (26%), Positives = 92/197 (46%), Gaps = 39/197 (19%)

Query: 93  IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 146
           ++ATG             +PG        D +  ISS     L     K +VVG  Y+ +
Sbjct: 178 LIATGERPRY-LG-----IPG--------DKEYCISSDDLFSLPYCPGKTLVVGASYVAL 223

Query: 147 EVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGA---SIKNL 201
           E A   A +G  LD T++   + LL R F   +A +  +  +++G+KF++      ++ +
Sbjct: 224 ECAGFLAGIG--LDVTVMV-RSILL-RGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQI 279

Query: 202 EAGSDGRVAAVKLEDGST-----IDADTIVIGIGAKPTVSPF--ERVG--LNSSVGGIQV 252
           EAG+ GR+  V  +  ++      + +T+++ IG          E VG  +N   G I V
Sbjct: 280 EAGTPGRLR-VVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPV 338

Query: 253 DGQFRTRMPGIFAIGDV 269
             + +T +P I+AIGD+
Sbjct: 339 TDEEQTNVPYIYAIGDI 355

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Length = 335

 Score = 90.3 bits (225), Expect = 2e-20
 Identities = 50/235 (21%), Positives = 92/235 (39%), Gaps = 38/235 (16%)

Query: 60  GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG---- 113
                  +   +++ E     + T+ G      ++I+A G  A   P +IG   PG    
Sbjct: 79  NPVYSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFE-PRRIG--APGEREF 135

Query: 114 ----VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 169
               V+Y   V           + K+V++VGGG        +AV W L+         L+
Sbjct: 136 EGRGVYYA--VKSKAEF-----QGKRVLIVGGG-------DSAVDWALNLLDTARRITLI 181

Query: 170 QR--LF--TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST-----I 220
            R   F    +  +   + +++  ++ +    ++ +E   D RV    +    T     +
Sbjct: 182 HRRPQFRAHEASVKELMKAHEEGRLEVLTPYELRRVEG--DERVRWAVVFHNQTQEELAL 239

Query: 221 DADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 275
           + D ++I  G    + P    GL      I+VD    T +PG++A GD+  +P K
Sbjct: 240 EVDAVLILAGYITKLGPLANWGLALEKNKIKVDTTMATSIPGVYACGDIVTYPGK 294

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} Length = 466

 Score = 91.5 bits (228), Expect = 2e-20
 Identities = 45/212 (21%), Positives = 83/212 (39%), Gaps = 26/212 (12%)

Query: 69  VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 128
           V + + ++    T          +I+A+G   ++        LPGV Y     D     +
Sbjct: 121 VKTDEGKEIEAETRY--------MIIASGAETAKLR------LPGVEYCLTSDDIFGYKT 166

Query: 129 SLEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY 185
           S  K  + +V++G GYIG+E+A+    +G +    II   +  L  L    +      L 
Sbjct: 167 SFRKLPQDMVIIGAGYIGLEIASIFRLMGVQT--HIIEMLDRALITLEDQDIVN---TLL 221

Query: 186 QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKP-TVSPFERV 241
               +     + +  ++   D     +         +I  +++V+  G +P        +
Sbjct: 222 SILKLNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGAREI 281

Query: 242 GLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFP 273
           GL+ S  GI VD   +T +P +FA GD     
Sbjct: 282 GLSISKTGIVVDETMKTNIPNVFATGDANGLA 313

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} Length = 360

 Score = 89.7 bits (223), Expect = 5e-20
 Identities = 52/223 (23%), Positives = 88/223 (39%), Gaps = 34/223 (15%)

Query: 72  IDIEKQ-----TLITNSGKLLKYGSLIVATGCTA--SRFPEKIGGY----LPGVHYIRDV 120
               K         TN+G + +  ++++A G  A   R   ++G         V+Y   V
Sbjct: 98  TKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYA--V 155

Query: 121 ADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--LFT--PS 176
              +       K K+VV+VGGG        +A+ W +          L+ R   F     
Sbjct: 156 KSVEDF-----KGKRVVIVGGG-------DSALDWTVGLIKNAASVTLVHRGHEFQGHGK 203

Query: 177 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS----TIDADTIVIGIGAK 232
            A   E+      +       + ++E  S+G +  V L        T++AD ++I IG K
Sbjct: 204 TAHEVERARANGTIDVYLETEVASIE-ESNGVLTRVHLRSSDGSKWTVEADRLLILIGFK 262

Query: 233 PTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 275
             + P  R  L      + VD   +T + G++A GD+A +P K
Sbjct: 263 SNLGPLARWDLELYENALVVDSHMKTSVDGLYAAGDIAYYPGK 305

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409

 Score = 88.2 bits (219), Expect = 2e-19
 Identities = 50/310 (16%), Positives = 90/310 (29%), Gaps = 68/310 (21%)

Query: 50  RQTPEWYKEKGIEMIYQDPVTSIDIEKQTLIT----NSGKLLKYGSLIVATGCTASRFPE 105
               E   EKGI+   +  V  ID +   +       S    +Y  +IV  G       E
Sbjct: 60  VDLSEALPEKGIQFQ-EGTVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHL--ATE 116

Query: 106 KIGGYLPGVHYIRDVADADAL---ISSLEKAKKVV--------------VVGGGYIGMEV 148
            + G+    + + +   A  L   + S +     +              V        + 
Sbjct: 117 LVKGWDKYGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHNPKPKVPENFVPNADS 176

Query: 149 AAAAVGWKL---------------DTTIIF--PENHLLQRLFTPSLAQRYEQLYQQNGVK 191
           A     +++                  +    P  +L     +P+  +    +Y Q G+K
Sbjct: 177 ACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGEYLSD--LSPNSRKAVASIYNQLGIK 234

Query: 192 FVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI--GIGAKPTV--SPFERVGLNSSV 247
            V    IK +          +  E G+TI AD  ++       P +  S      L    
Sbjct: 235 LVHNFKIKEIREH------EIVDEKGNTIPADITILLPPYTGNPALKNSTP---DLVDDG 285

Query: 248 GGIQVDGQFR-TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHC---IKALLSA 303
           G I  D      +   ++A+GD  +       +         A  + +     +   L  
Sbjct: 286 GFIPTDLNMVSIKYDNVYAVGDANSMT---VPKLGY-----LAVMTGRIAAQHLANRLGV 337

Query: 304 QTHTYDYLPY 313
            T    Y P 
Sbjct: 338 PTKVDKYYPT 347

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 24/118 (20%)

Query: 134 KKVVVVGGGYIGMEVAAAA---VGWKLDTTIIFPENHLLQRLFTPSL------------- 177
            KV+V+GG +  +  A      VG K D  +I          F P+L             
Sbjct: 2   TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFS---YFRPALPHVAIGVRDVDEL 58

Query: 178 AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKP 233
                +   + G++F +G  ++ ++A     +      DGS    + D +++GIGA  
Sbjct: 59  KVDLSEALPEKGIQFQEGT-VEKIDA--KSSMVYYTKPDGSMAEEEYDYVIVGIGAHL 113

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* Length = 598

 Score = 88.5 bits (220), Expect = 4e-19
 Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 19/157 (12%)

Query: 129 SLEKA-KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ 187
           SL     K +V+G  Y+ +E A        D T++   + LL R F   +A++     + 
Sbjct: 281 SLPYFPGKTLVIGASYVALECAGFLASLGGDVTVMV-RSILL-RGFDQQMAEKVGDYMEN 338

Query: 188 NGVKFVKGASIKN--------LEAGSDGR-VAAVKLEDGST--IDADTIVIGIGAKPTVS 236
           +GVKF K               E    G  +      DG     + +T++  +G +P +S
Sbjct: 339 HGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLS 398

Query: 237 PF--ERVG--LNSSVGGIQVDGQFRTRMPGIFAIGDV 269
               E VG  L+ + G +      +T +  ++AIGD+
Sbjct: 399 KVLCETVGVKLDKN-GRVVCTDDEQTTVSNVYAIGDI 434

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* Length = 455

 Score = 87.2 bits (217), Expect = 7e-19
 Identities = 52/214 (24%), Positives = 101/214 (47%), Gaps = 29/214 (13%)

Query: 71  SIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS- 129
               E++ L+  +G+ L+   +++ATG              P         D + +++S 
Sbjct: 112 RFLSERKVLVEETGEELEARYILIATGSAPLI--------PPWAQV-----DYERVVTST 158

Query: 130 ----LEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 182
                 +  K+++VVGGG IG+E+      +G +    ++   + +L       +++  E
Sbjct: 159 EALSFPEVPKRLIVVGGGVIGLELGVVWHRLGAE--VIVLEYMDRILP-TMDLEVSRAAE 215

Query: 183 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FER 240
           +++++ G+    G  +  +   + G  A V+LE G  ++AD +++ +G +P       E 
Sbjct: 216 RVFKKQGLTIRTGVRVTAVVPEAKG--ARVELEGGEVLEADRVLVAVGRRPYTEGLSLEN 273

Query: 241 VGLNSSVGG-IQVDGQFRTRMPGIFAIGDVAAFP 273
            GL++   G I VD   RTR+P I+AIGDV   P
Sbjct: 274 AGLSTDERGRIPVDEHLRTRVPHIYAIGDVVRGP 307

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 458

 Score = 86.4 bits (215), Expect = 1e-18
 Identities = 47/197 (23%), Positives = 92/197 (46%), Gaps = 21/197 (10%)

Query: 83  SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA-DALISSLEKA-KKVVVVG 140
            G+ ++   L++ATG ++          LP +     V  + +AL  + +   + +VVVG
Sbjct: 129 DGQRIQCEHLLLATGSSSVE--------LPMLPLGGPVISSTEAL--APKALPQHLVVVG 178

Query: 141 GGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 198
           GGYIG+E+      +G ++  +++     +L   +   L     +  ++ G+    G S+
Sbjct: 179 GGYIGLELGIAYRKLGAQV--SVVEARERILP-TYDSELTAPVAESLKKLGIALHLGHSV 235

Query: 199 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQVDGQF 256
           +  E G    +A         ++AD +++ +G +P    F  E + L  +   I +D + 
Sbjct: 236 EGYENG--CLLANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGAAIAIDERC 293

Query: 257 RTRMPGIFAIGDVAAFP 273
           +T M  ++AIGDVA  P
Sbjct: 294 QTSMHNVWAIGDVAGEP 310

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437

 Score = 84.4 bits (209), Expect = 6e-18
 Identities = 47/272 (17%), Positives = 80/272 (29%), Gaps = 43/272 (15%)

Query: 38  PGFHTCVGSGG------ERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGS 91
           P     VG G             + + KGI  I       ID E Q +    G  + Y  
Sbjct: 46  PSNPW-VGVGWKERDDIAFPIRHYVERKGIHFI-AQSAEQIDAEAQNITLADGNTVHYDY 103

Query: 92  LIVATGCTASRFPEKIGG---YLPGVHYIRDVADADALISSLEKAKK----VVVVGGGYI 144
           L++ATG   +   E + G   +   V  I  V  A+   +  +   +    +V+      
Sbjct: 104 LMIATGPKLA--FENVPGSDPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGAMAGA 161

Query: 145 GMEVAAAAVGWKLDT--------------TIIFPENHLLQRL--FTPSLAQRYEQLYQQN 188
                A      + +              T I  E ++                +  ++ 
Sbjct: 162 SCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEE 221

Query: 189 GVKFVKGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTIVIGIGAKPTVSPFERVGL 243
           G++      +  +E   +        E G       +     ++    K  V     V  
Sbjct: 222 GIEAYTNCKVTKVED--NKMYVTQVDEKGETIKEMVLPVKFGMMIPAFKG-VPAVAGVEG 278

Query: 244 NSSVGG-IQVDGQFR-TRMPGIFAIGDVAAFP 273
             + GG + VD   R  +   IFA G   A P
Sbjct: 279 LCNPGGFVLVDEHQRSKKYANIFAAGIAIAIP 310

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437

 Score = 50.5 bits (121), Expect = 5e-07
 Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 24/120 (20%)

Query: 130 LEKAKKVVVVGGGYIGMEVAAA---AVGWKLDTTIIFPENHLLQRLFTPSL--------- 177
           +  +  VV++G G  GM  A     A+G   + T+I   ++     F PS          
Sbjct: 1   MRGSAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYF---QFVPSNPWVGVGWKE 57

Query: 178 ----AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 233
               A       ++ G+ F+   S + ++A  + +   + L DG+T+  D ++I  G K 
Sbjct: 58  RDDIAFPIRHYVERKGIHFIA-QSAEQIDA--EAQ--NITLADGNTVHYDYLMIATGPKL 112

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* Length = 464

 Score = 84.1 bits (209), Expect = 8e-18
 Identities = 46/211 (21%), Positives = 86/211 (40%), Gaps = 25/211 (11%)

Query: 69  VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 128
           V   D   +++  ++         I+ATG +           +PG     +V   +  I 
Sbjct: 123 VDLNDGGTESVTFDN--------AIIATGSSTRL--------VPGTSLSANVVTYEEQIL 166

Query: 129 SLEKAKKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ 186
           S E  K +++ G G IGME        G  +D TI+      L       +++  E+ ++
Sbjct: 167 SRELPKSIIIAGAGAIGMEFGYVLKNYG--VDVTIVEFLPRALP-NEDADVSKEIEKQFK 223

Query: 187 QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIGAKPTVSPF--ERVGL 243
           + GV  +    ++++  G       V  +  +  + A+ ++  IG  P V  +  ++ G+
Sbjct: 224 KLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGV 283

Query: 244 N-SSVGGIQVDGQFRTRMPGIFAIGDVAAFP 273
             +    I VD   RT +  I+AIGDV    
Sbjct: 284 ALTDRKAIGVDDYMRTNVGHIYAIGDVNGLL 314

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* Length = 467

 Score = 83.0 bits (206), Expect = 2e-17
 Identities = 41/203 (20%), Positives = 85/203 (41%), Gaps = 23/203 (11%)

Query: 78  TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA-KKV 136
            L     +++ +   +VATG + +  P      +PG+         +AL  + +   +++
Sbjct: 128 RLNEGGERVVMFDRCLVATGASPAVPP------IPGLKESPYWTSTEAL--ASDTIPERL 179

Query: 137 VVVGGGYIGMEVAA--AAVGWKLDTTIIFPE-NHLLQRLFTPSLAQRYEQLYQQNGVKFV 193
            V+G   + +E+A   A +G K+  T++    N L  R   P++ +     ++  G++ +
Sbjct: 180 AVIGSSVVALELAQAFARLGSKV--TVL--ARNTLFFR-EDPAIGEAVTAAFRAEGIEVL 234

Query: 194 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGI 250
           +      +       V  +    G  + AD +++  G  P       +  G+  ++ G I
Sbjct: 235 EHTQASQVAHMDGEFV--LTTTHG-ELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAI 291

Query: 251 QVDGQFRTRMPGIFAIGDVAAFP 273
            +D   RT  P I+A GD    P
Sbjct: 292 VIDQGMRTSNPNIYAAGDCTDQP 314

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 455

 Score = 82.6 bits (205), Expect = 2e-17
 Identities = 62/206 (30%), Positives = 97/206 (47%), Gaps = 33/206 (16%)

Query: 82  NSGKLLKYGSLIVATGCTASRFP-----EKIGGYLPGVHYIRDVADADALISSLEKA-KK 135
           +S +   + + I+ATG      P      +I            +    AL  +L +  K 
Sbjct: 127 DSAQTYTFKNAIIATGSRPIELPNFKFSNRI------------LDSTGAL--NLGEVPKS 172

Query: 136 VVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 193
           +VV+GGGYIG+E+    A  G K+  TI+     +L   F   +A   ++  ++ GV+ V
Sbjct: 173 LVVIGGGYIGIELGTAYANFGTKV--TILEGAGEILS-GFEKQMAAIIKKRLKKKGVEVV 229

Query: 194 KGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSP--FERVGLN-SSV 247
             A  K  E   DG    V  E      TIDAD +++ +G +P       E++G+  ++ 
Sbjct: 230 TNALAKGAEEREDG--VTVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNR 287

Query: 248 GGIQVDGQFRTRMPGIFAIGDVAAFP 273
           G I+VD Q RT +P IFAIGD+   P
Sbjct: 288 GLIEVDQQCRTSVPNIFAIGDIVPGP 313

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* Length = 482

 Score = 82.2 bits (204), Expect = 3e-17
 Identities = 44/220 (20%), Positives = 93/220 (42%), Gaps = 32/220 (14%)

Query: 69  VTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFP-----EKIGGYLPGVHYIRDVA 121
           V+    +       +G+  ++ + + I+A G   ++ P      +I            + 
Sbjct: 127 VSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVTKLPFIPEDPRI------------ID 174

Query: 122 DADALISSLEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLA 178
            + AL  +L++   K++++GGG IG+E+    + +G +L   ++   + L+Q      L 
Sbjct: 175 SSGAL--ALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRL--DVVEMMDGLMQ-GADRDLV 229

Query: 179 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVS 236
           + +++  +      +       +E   DG     +  +        D +++  G  P   
Sbjct: 230 KVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNGK 289

Query: 237 P--FERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFP 273
               E+ G+  +  G I+VD Q RT +P I+AIGD+   P
Sbjct: 290 LISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQP 329

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* Length = 464

 Score = 82.2 bits (204), Expect = 4e-17
 Identities = 47/206 (22%), Positives = 85/206 (41%), Gaps = 32/206 (15%)

Query: 83  SGKLLKYGSLIVATGCTASRFP-----EKIGGYLPGVHYIRDVADADALISSLEKA--KK 135
            G+     SLI+ATG            E +                 AL   +E+   K+
Sbjct: 126 GGERYGAKSLILATGSEPLELKGFPFGEDV------------WDSTRAL--KVEEGLPKR 171

Query: 136 VVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 193
           ++V+GGG +G+E+      +G ++  T+I     +L     P  A    +  ++ G++  
Sbjct: 172 LLVIGGGAVGLELGQVYRRLGAEV--TLIEYMPEILP-QGDPETAALLRRALEKEGIRVR 228

Query: 194 KGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSP--FERVGLNSSVG 248
                   E   DG    ++  +G     +  D +++ +G KP       E+ G+     
Sbjct: 229 TKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDER 288

Query: 249 G-IQVDGQFRTRMPGIFAIGDVAAFP 273
           G I+V+ +  T +PG++AIGD A  P
Sbjct: 289 GFIRVNARMETSVPGVYAIGDAARPP 314

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* Length = 474

 Score = 81.0 bits (201), Expect = 8e-17
 Identities = 57/221 (25%), Positives = 101/221 (45%), Gaps = 40/221 (18%)

Query: 69  VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 128
            T  D   Q + T +        +++ATG   +          PG+       D D ++S
Sbjct: 129 ATKADGGTQVIDTKN--------ILIATGSEVTP--------FPGITI-----DEDTIVS 167

Query: 129 S-----LEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQR 180
           S     L+K  +K+VV+G G IG+E+ +    +G  +  T +    H+        +++ 
Sbjct: 168 STGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADV--TAVEFLGHVGGVGIDMEISKN 225

Query: 181 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTIVIGIGAKPTV 235
           ++++ Q+ G KF     +      SDG++  V +E  S      I  D +++ IG +P  
Sbjct: 226 FQRILQKQGFKFKLNTKVTGATKKSDGKID-VSIEAASGGKAEVITCDVLLVCIGRRPFT 284

Query: 236 SP--FERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFP 273
                E +G+     G I V+ +F+T++P I+AIGDV A P
Sbjct: 285 KNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGP 325

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* Length = 332

 Score = 79.2 bits (196), Expect = 2e-16
 Identities = 42/220 (19%), Positives = 80/220 (36%), Gaps = 36/220 (16%)

Query: 73  DIEKQT----LITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG--------VHYIRDV 120
            +EKQ      +  + +     ++I+  G  A + P K+   L          +HY   V
Sbjct: 92  SVEKQADGVFKLVTNEETHYSKTVIITAGNGAFK-PRKLE--LENAEQYEGKNLHYF--V 146

Query: 121 ADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR 180
            D           ++V ++GGG        +AV W L    I  E  ++ R       + 
Sbjct: 147 DDLQKF-----AGRRVAILGGG-------DSAVDWALMLEPIAKEVSIIHRRDKFRAHEH 194

Query: 181 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-----STIDADTIVIGIGAKPTV 235
             +    + V  +       L    + ++  + LE+        ++ D +++  G   ++
Sbjct: 195 SVENLHASKVNVLTPFVPAELIG--EDKIEQLVLEEVKGDRKEILEIDDLIVNYGFVSSL 252

Query: 236 SPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 275
            P +  GL+     I V     T + G FA GD+  +  K
Sbjct: 253 GPIKNWGLDIEKNSIVVKSTMETNIEGFFAAGDICTYEGK 292

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} Length = 491

 Score = 79.9 bits (198), Expect = 2e-16
 Identities = 58/218 (26%), Positives = 103/218 (47%), Gaps = 34/218 (15%)

Query: 69  VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRD----VADAD 124
           VT+   E+Q L   +        +++ATG   +         +PGV    D    V+   
Sbjct: 147 VTNEKGEEQVLEAKN--------VVIATGSDVAG--------IPGVEVAFDEKTIVSSTG 190

Query: 125 ALISSLEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRY 181
           AL  +LEK    ++VVGGG IG+E+ +  A +G K+  T++   + +L       +A++ 
Sbjct: 191 AL--ALEKVPASMIVVGGGVIGLELGSVWARLGAKV--TVVEFLDTILG-GMDGEVAKQL 245

Query: 182 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS---TIDADTIVIGIGAKPTVSP- 237
           +++  + G+ F  GA +       DG     +   G    T+DA+ ++I  G KP+    
Sbjct: 246 QRMLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPSTDGL 305

Query: 238 -FERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDVAAFP 273
              + G+     G +++D  F+T + G++AIGDV   P
Sbjct: 306 GLAKAGVVLDSRGRVEIDRHFQTSIAGVYAIGDVVRGP 343

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 470

 Score = 79.1 bits (196), Expect = 3e-16
 Identities = 53/219 (24%), Positives = 101/219 (46%), Gaps = 38/219 (17%)

Query: 69  VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 128
           V +I+ E   +            +I+ATG             LPGV       D   ++S
Sbjct: 128 VDTIEGENTVVKGKH--------IIIATGSDVKS--------LPGVTI-----DEKKIVS 166

Query: 129 S-----LEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQR 180
           S     L +  KK+VV+G GYIG+E+ +    +G +   T++   + ++       + ++
Sbjct: 167 STGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSE--VTVVEFASEIVP-TMDAEIRKQ 223

Query: 181 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSP 237
           +++  ++ G+KF     +  ++   DG    V+   G   + I+AD +++  G  P  S 
Sbjct: 224 FQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSG 283

Query: 238 --FERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDVAAFP 273
              +++G+ +   G I V+ +F T + G++AIGDV   P
Sbjct: 284 LNLDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGP 322

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* Length = 478

 Score = 79.1 bits (196), Expect = 4e-16
 Identities = 52/218 (23%), Positives = 104/218 (47%), Gaps = 36/218 (16%)

Query: 69  VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP------EKIGGYLPGVHYIRDVAD 122
           VT +D  + T       +L   ++IVATG   + FP      EKI            V+ 
Sbjct: 128 VTPVDGLEGT--VKEDHILDVKNIIVATGSEVTPFPGIEIDEEKI------------VSS 173

Query: 123 ADALISSLEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQ 179
             AL  SL++  K++ ++GGG IG+E+ +  + +G K+  T++  +  +        +A+
Sbjct: 174 TGAL--SLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKV--TVVEFQPQIGA-SMDGEVAK 228

Query: 180 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTIVIGIGAKPT 234
             ++  ++ G+ F     + + +   D  V  + +ED        ++A+ +++ +G +P 
Sbjct: 229 ATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPY 288

Query: 235 VSPF--ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDV 269
           ++    E++GL     G + +D QF ++ P I  +GDV
Sbjct: 289 IAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDV 326

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* Length = 476

 Score = 77.9 bits (193), Expect = 8e-16
 Identities = 49/217 (22%), Positives = 90/217 (41%), Gaps = 36/217 (16%)

Query: 69  VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 128
           VT+ D   Q L T +        +I+A+G             +P         D D ++ 
Sbjct: 131 VTAADGSSQVLDTEN--------VILASGSKPVE--------IPPAPV-----DQDVIVD 169

Query: 129 S-----LEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQR 180
           S      +    K+ V+G G IG+E+ +  A +G ++  T++   +  L       +A+ 
Sbjct: 170 STGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEV--TVLEAMDKFLP-AVDEQVAKE 226

Query: 181 YEQLYQQNGVKFVKGASIKNLEAGSDG-RVAAVKLEDGSTIDADTIVIGIGAKPTVSP-- 237
            +++  + G+K + GA +   E  +    V  V  E   +   D +++ +G +P  +   
Sbjct: 227 AQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLL 286

Query: 238 FERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDVAAFP 273
               G+     G I VD    T +PG++AIGDV    
Sbjct: 287 AADSGVTLDERGFIYVDDYCATSVPGVYAIGDVVRGA 323

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} Length = 468

 Score = 76.8 bits (190), Expect = 2e-15
 Identities = 44/215 (20%), Positives = 91/215 (42%), Gaps = 38/215 (17%)

Query: 69  VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 128
           V  +D +++ L T           I+ATG   +         LP + +     D   ++S
Sbjct: 125 VNGLDGKQEMLETKK--------TIIATGSEPTE--------LPFLPF-----DEKVVLS 163

Query: 129 S-----LEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQR 180
           S     L +  K +VV+GGG IG+E+ +  A +G ++  T++              +   
Sbjct: 164 STGALALPRVPKTMVVIGGGVIGLELGSVWARLGAEV--TVVEFAPRCAP-TLDEDVTNA 220

Query: 181 YE-QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVSP 237
               L +   +KF+    +       D     V+ ++G   T+  + +++ +G +P    
Sbjct: 221 LVGALAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFTGG 280

Query: 238 F--ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDV 269
              +++ +  +  G +++   F T +P ++AIGDV
Sbjct: 281 LGLDKINVAKNERGFVKIGDHFETSIPDVYAIGDV 315

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} Length = 297

 Score = 75.3 bits (186), Expect = 2e-15
 Identities = 48/229 (20%), Positives = 70/229 (30%), Gaps = 50/229 (21%)

Query: 60  GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP----G 113
            I  +    VT          +  + G+    G LI+A G T    PE I G        
Sbjct: 71  TIHWVEGR-VTDAKGSFGEFIVEIDGGRRETAGRLILAMGVTD-ELPE-IAGLRERWGSA 127

Query: 114 VHY--------IRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 165
           V +        +                 K+ V+    + +  A     W   T      
Sbjct: 128 VFHCPYCHGYELDQ--------------GKIGVIAASPMAIHHALMLPDWGETTFFT--- 170

Query: 166 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 225
                 +  P   Q    L    GV  V+   I+ +   +D     V L DG +I    +
Sbjct: 171 ----NGIVEPDADQH-ALL-AARGV-RVETTRIREIAGHAD-----VVLADGRSIALAGL 218

Query: 226 VIGIGAKPTVSPFERVGL----NSSVGGIQVDGQFRTRMPGIFAIGDVA 270
                 + TV   E++G           I  D   +T   GIFA GDVA
Sbjct: 219 FTQPKLRITVDWIEKLGCAVEEGPMGSTIVTDPMKQTTARGIFACGDVA 267

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A Length = 521

 Score = 76.2 bits (188), Expect = 3e-15
 Identities = 51/234 (21%), Positives = 87/234 (37%), Gaps = 37/234 (15%)

Query: 60  GIEMIYQDPVTSIDIEKQ-----TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP-- 112
            +++I     + +           + T SG +LK  S+I+ATG         +   +P  
Sbjct: 281 DVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAK----WRNMN--VPGE 334

Query: 113 ------GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 166
                 GV Y       D     L K K+V V+GGG  G+E A    G     T++    
Sbjct: 335 DQYRTKGVTY---CPHCDG---PLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLL---- 384

Query: 167 HLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST-----ID 221
                +    + Q  +++     V  +  A    ++ G   +V  ++  D  +     + 
Sbjct: 385 EFAPEMKADQVLQ--DKVRSLKNVDIILNAQTTEVK-GDGSKVVGLEYRDRVSGDIHSVA 441

Query: 222 ADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 275
              I + IG  P     E     + +G I +D +  T + G+FA GD    P K
Sbjct: 442 LAGIFVQIGLLPNTHWLEGALERNRMGEIIIDAKCETSVKGVFAAGDCTTVPYK 495

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} Length = 492

 Score = 74.9 bits (185), Expect = 8e-15
 Identities = 37/218 (16%), Positives = 72/218 (33%), Gaps = 39/218 (17%)

Query: 74  IEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS---- 129
           +++ TL  +    +    +++ATG   +        Y   +           L+++    
Sbjct: 122 LDEHTLQVDDHSQVIAKRIVIATGSRPN--------YPEFLAA-----AGSRLLTNDNLF 168

Query: 130 -LEKA-KKVVVVGGGYIGMEVAAAAVGWK---LDTTIIFPENHLLQRLFTPSLAQRYEQL 184
            L    K V V G G IG+E+  A        +   +      +   L    + +  E+ 
Sbjct: 169 ELNDLPKSVAVFGPGVIGLELGQA---LSRLGVIVKVFGRSGSVAN-LQDEEMKRYAEKT 224

Query: 185 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVSPFERVG 242
           + +    F   A + +     D        + G   T     ++   G K  V   +++G
Sbjct: 225 FNEEF-YFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKANV---DKLG 280

Query: 243 L-NSSV-----GGIQVD-GQFRTRMPGIFAIGDVAAFP 273
           L N+S+          D    +T +  IF  GD     
Sbjct: 281 LENTSIELDKKNSPLFDELTLQTSVDHIFVAGDANNTL 318

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} Length = 319

 Score = 72.6 bits (179), Expect = 2e-14
 Identities = 55/241 (22%), Positives = 86/241 (35%), Gaps = 56/241 (23%)

Query: 60  GIEMIYQDPVTSIDIEKQT-LITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP------ 112
                  + V SI   +    I  +        +I+ TG T     + +G  +       
Sbjct: 86  AKIREGVE-VRSIKKTQGGFDIETNDDTYHAKYVIITTGTT----HKHLG--VKGESEYF 138

Query: 113 --GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVA------AAAVGWKLDTTIIFP 164
             G  Y    +  D     L K K+VV +GGG  G   A         V      TII  
Sbjct: 139 GKGTSY---CSTCDG---YLFKGKRVVTIGGGNSGAIAAISMSEYVKNV------TII-- 184

Query: 165 ENHLLQRLFTPSLAQRYEQLYQQ----NGVKFVKGASIKNLEAGSDGRVAAVKLEDGST- 219
               + +          E  Y Q      + ++  A +  +  G   +V  VK +D +T 
Sbjct: 185 --EYMPKY-------MCENAYVQEIKKRNIPYIMNAQVTEIV-GDGKKVTGVKYKDRTTG 234

Query: 220 ----IDADTIVIGIGAKPTVSPFERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDVAAFPL 274
               I+ D + I +G  P  S  +  G+     G I VD + RT +PG++A GDV +   
Sbjct: 235 EEKLIETDGVFIYVGLIPQTSFLKDSGVKLDERGYIVVDSRQRTSVPGVYAAGDVTSGNF 294

Query: 275 K 275
            
Sbjct: 295 A 295

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 Length = 310

 Score = 71.7 bits (177), Expect = 4e-14
 Identities = 58/237 (24%), Positives = 93/237 (39%), Gaps = 43/237 (18%)

Query: 60  GIEMIYQDP---VTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP-- 112
            +++I       +    +E     + T SG +LK  S+IVATG         +   +P  
Sbjct: 70  DVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAK----WRNMN--VPGE 123

Query: 113 ------GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 166
                 GV Y       D     L K K+V V+GGG  G+E A       +D   I    
Sbjct: 124 DQYRTKGVTY---CPHCDG---PLFKGKRVAVIGGGNSGVEAA-------IDLAGIVEHV 170

Query: 167 HLLQRLFTPSL-AQRY--EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST---- 219
            LL+    P + A +   ++L     V  +  A    ++ G   +V  ++  D  +    
Sbjct: 171 TLLEFA--PEMKADQVLQDKLRSLKNVDIILNAQTTEVK-GDGSKVVGLEYRDRVSGDIH 227

Query: 220 -IDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 275
            I+   I + IG  P  +  E     + +G I +D +  T + G+FA GD    P K
Sbjct: 228 NIELAGIFVQIGLLPNTNWLEGAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYK 284

>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit); electron transport(flavocytochrome); HET: FAD HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 401

 Score = 70.2 bits (172), Expect = 2e-13
 Identities = 54/264 (20%), Positives = 88/264 (33%), Gaps = 39/264 (14%)

Query: 40  FHTCVGS----GGERQTPEWYKE------KGIEMIYQDPVTSIDIEKQTLITNSGKLLKY 89
           ++TC  S    GG+R+              GI+++  D  T ID +K+ + T  G    Y
Sbjct: 39  YYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVV-HDSATGIDPDKKLVKTAGGAEFGY 97

Query: 90  GSLIVATGCTASRFPEKIGGYLP-----GVHYIRDVADADAL---ISSLEKAKKVVVV-- 139
              +VA G       +KI GY         H  +       L   +  +     VV+   
Sbjct: 98  DRCVVAPGIELI--YDKIEGYSEEAAAKLPHAWKAGEQTAILRKQLEDMADGGTVVIAPP 155

Query: 140 -------GGGYIGMEVAAAAV---GWKLDTTIIFPENHL-LQRLFTPSLAQRYEQLYQQN 188
                   G Y      A  +          I+        Q  F+    + Y    +  
Sbjct: 156 AAPFRCPPGPYERASQVAYYLKAHKPMSKVIILDSSQTFSKQSQFSKGWERLYGFGTENA 215

Query: 189 GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVG 248
            +++  G     ++   DG    V+   G    AD I + I  +      +  GL +  G
Sbjct: 216 MIEWHPGPDSAVVKV--DGGEMMVETAFGDEFKADVINL-IPPQRAGKIAQIAGLTNDAG 272

Query: 249 GIQVDGQ-FR-TRMPGIFAIGDVA 270
              VD + F  +   GI  IGD +
Sbjct: 273 WCPVDIKTFESSIHKGIHVIGDAS 296

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025

 Score = 69.5 bits (170), Expect = 7e-13
 Identities = 57/323 (17%), Positives = 112/323 (34%), Gaps = 60/323 (18%)

Query: 54  EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRF------PEKI 107
           E  K+ G+++I    ++  +I   TL         Y +  +  G    +         + 
Sbjct: 246 ELMKDLGVKIICGKSLSENEITLNTLKEEG-----YKAAFIGIGLPEPKTDDIFQGLTQD 300

Query: 108 GGYLPGVHYIRDVADADALISSLEKA------KKVVVVGGGYIGMEVAAAAV--GWKLDT 159
            G+     ++  VA +         +        V+V+G G    + A +A+  G +   
Sbjct: 301 QGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGAR-RV 359

Query: 160 TIIFPENHLLQRLFTPSLAQRYE-QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--- 215
            ++F      ++ F    A   E +L ++   +F+   S + +     GR+ AV+     
Sbjct: 360 FLVF------RKGFVNIRAVPEEVELAKEEKCEFLPFLSPRKVI-VKGGRIVAVQFVRTE 412

Query: 216 ----------DGS--TIDADTIVIGIGAKPTVSP--FERVGLN-SSVGGIQVDGQ-FRTR 259
                     +     + AD ++   G+             +  +     +VD +  +T 
Sbjct: 413 QDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTS 472

Query: 260 MPGIFAIGDVAAFPLKMYDRTAR--VEHVDHARQSAQ--HC-IKALLSAQTHTYDYLPYF 314
            P +FA GD+           A   VE V+  +Q++   H  I+A   A       LP F
Sbjct: 473 EPWVFAGGDIV--------GMANTTVESVNDGKQASWYIHKYIQAQYGASVSAKPELPLF 524

Query: 315 YSRVFEYEGSPRKVWWQFFGDNV 337
           Y+ V   + S      +F     
Sbjct: 525 YTPVDLVDISVEMAGLKFINPFG 547

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* Length = 323

 Score = 63.7 bits (156), Expect = 2e-11
 Identities = 53/233 (22%), Positives = 90/233 (38%), Gaps = 51/233 (21%)

Query: 60  GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR--FP--EKIGGYLPG 113
            + ++  D V  I+       + T      K  S+I+  G    +   P  ++  G   G
Sbjct: 84  EVPVLL-DIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRKLGVPGEQEFAGR--G 140

Query: 114 VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVA------AAAVGWKLDTTIIFPENH 167
           + Y    + ADA    L K + V V+GGG   +E A      +  V       +I   + 
Sbjct: 141 ISY---CSVADA---PLFKNRVVAVIGGGDSALEGAEILSSYSTKV------YLIHRRDT 188

Query: 168 LLQRLFTPSLAQRYEQLYQQ-----NGVKFVKGASIKNLEAGSDGRVAAVKLED-----G 217
                       + + +Y +       V+FV  + +K  E   D  V  V +E+      
Sbjct: 189 F-----------KAQPIYVETVKKKPNVEFVLNSVVK--EIKGDKVVKQVVVENLKTGEI 235

Query: 218 STIDADTIVIGIGAKPTVSPFERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDV 269
             ++ + + I IG  P     +  G+ +   G I+VD   RT +PG+FA GD 
Sbjct: 236 KELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMRTSVPGVFAAGDC 288

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690

 Score = 64.2 bits (157), Expect = 3e-11
 Identities = 43/233 (18%), Positives = 73/233 (31%), Gaps = 34/233 (14%)

Query: 50  RQTPEWY-----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT--ASR 102
            +  E+      +   +E+  + P+T  DI +            +  +I ATG T     
Sbjct: 443 GRVKEYREAVLAELPNVEIYRESPMTGDDIVE----------FGFEHVITATGATWRTDG 492

Query: 103 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGG--YIGMEVAAAAVGWKLDTT 160
                   LP    ++ +   D     L   KKVVV      Y+G  VA        + +
Sbjct: 493 VARFHTTALPIAEGMQVLGPDDLFAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVS 552

Query: 161 IIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--S 218
           I+ P   +           R ++   +NGV  V   +   + A   G V           
Sbjct: 553 IVTPGAQVSSWTNNTFEVNRIQRRLIENGVARVTDHA---VVAVGAGGVTVRDTYASIER 609

Query: 219 TIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 271
            ++ D +V+     P    +  +      G I            +  IGD  A
Sbjct: 610 ELECDAVVMVTARLPREELYLDLVARRDAGEI----------ASVRGIGDAWA 652

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* Length = 311

 Score = 60.6 bits (148), Expect = 2e-10
 Identities = 41/252 (16%), Positives = 82/252 (32%), Gaps = 82/252 (32%)

Query: 60  GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR--FP--EKIGGYLPG 113
           G++      V  +  +     ++   GK  +  S+I+ATG +  R       +  G   G
Sbjct: 73  GLKHEM-TAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPKRTGIKGESEYWGK--G 129

Query: 114 VHY--------IRDVADADALISSLEKAKKVVVVGGGYIGMEVA------AAAVGWKLDT 159
           V           ++              K+V V+GGG   +E A         V      
Sbjct: 130 VSTCATCDGFFYKN--------------KEVAVLGGGDTAVEEAIYLANICKKV------ 169

Query: 160 TIIFPENH----------LLQRLFTPSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGR 208
            +I    H           L+                 N  ++F+    ++ ++ G    
Sbjct: 170 YLI----HRRDGFRCAPITLEHAK-------------NNDKIEFLTPYVVEEIK-GDASG 211

Query: 209 VAAVKLED-----GSTIDADTIVIGIGAKPTVSPFERVGLNSSV-----GGIQVDGQFRT 258
           V+++ +++        +      I +G     +  ++   +        G I VD   +T
Sbjct: 212 VSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVDFSMKT 271

Query: 259 RMPGIFAIGDVA 270
            + G+FA GD+ 
Sbjct: 272 NVQGLFAAGDIR 283

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357

 Score = 59.7 bits (145), Expect = 5e-10
 Identities = 38/228 (16%), Positives = 77/228 (33%), Gaps = 34/228 (14%)

Query: 69  VTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS-RFPEKIGGYLPGVHYI--RDVADA 123
           V  +    +   ++   G+     ++I ATG       PE  G        +     +  
Sbjct: 99  VQRVSHFGERLRVVARDGRQWLARAVISATGTWGEAYTPEYQGLESFAGIQLHSAHYSTP 158

Query: 124 DALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF-PENHLLQRLFTPSLAQRYE 182
                      +V ++GGG  G ++ A        T I       L   +    L +R  
Sbjct: 159 APF-----AGMRVAIIGGGNSGAQILAEVSTVAETTWITQHEPAFLADDVDGRVLFERAT 213

Query: 183 QLYQQN--------GVKFVKGASIKN--LEAGSDGRVAA-----------VKLEDGSTID 221
           + ++                   +    L+A + G +AA           ++  DG+   
Sbjct: 214 ERWKAQQEGREPDLPPGGFGDIVMVPPVLDARARGVLAAVPPPARFSPTGMQWADGTERA 273

Query: 222 ADTIVIGIGAKPTVSPFERVGLNSSVGGIQVD--GQFRTRMPGIFAIG 267
            D ++   G +P +S  + + L +  G ++VD  G     +P ++ +G
Sbjct: 274 FDAVIWCTGFRPALSHLKGLDLVTPQGQVEVDGSGLRALAVPSVWLLG 321

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.6 bits (138), Expect = 4e-09
 Identities = 64/393 (16%), Positives = 111/393 (28%), Gaps = 113/393 (28%)

Query: 17  YERPALTKG----------------YLF-PLDKKPARLPGFHTCVGSGGERQTPEWYKEK 59
             +  L+K                  LF  L  K          V     R   ++    
Sbjct: 41  MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE--MVQKFVE-EVLRINYKFLMSP 97

Query: 60  GIEMIYQDP--VTSIDIEKQTLITNSGKLL-KYGSLIVATGCTASRFPEKIGGYLPGVHY 116
            I+   + P  +T + IE++  + N  ++  KY           SR  +           
Sbjct: 98  -IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY---------NVSR-LQP-------YLK 139

Query: 117 IRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTI-------IF------ 163
           +R      AL   L  AK V++ G    G    A  V   L   +       IF      
Sbjct: 140 LRQ-----AL-LELRPAKNVLIDGVLGSGKTWVALDV--CLSYKVQCKMDFKIFWLNLKN 191

Query: 164 ---PENHL--LQRL---FTPSLAQRYEQL----YQQNGVK-----FVKGASIKN----LE 202
              PE  L  LQ+L     P+   R +       + + ++      +K    +N    L 
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251

Query: 203 AGSDGRVA-AVKLE--------DGSTIDA-----DTIVIGIGAKPTVSPFERVGLNSSVG 248
              + +   A  L              D       T +       T++P E   L     
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311

Query: 249 GIQVDG---QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT 305
             +      +  T  P    +  +A             +HV+  + +    I++ L+   
Sbjct: 312 DCRPQDLPREVLTTNP--RRLSIIAESIRDGLATWDNWKHVNCDKLT--TIIESSLNVLE 367

Query: 306 HTYDYLPYFYS-RVFEYEGS--PRKV----WWQ 331
              +Y   F    VF    +  P  +    W+ 
Sbjct: 368 -PAEYRKMFDRLSVFP-PSAHIPTILLSLIWFD 398

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} Length = 315

 Score = 54.8 bits (133), Expect = 1e-08
 Identities = 46/252 (18%), Positives = 85/252 (33%), Gaps = 82/252 (32%)

Query: 60  GIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTASR--FP--EKIGGYLP 112
           G++      V  I        T+    GK     ++IV TG    +  F   ++  G   
Sbjct: 76  GLKHEM-VGVEQILKNSDGSFTIKLEGGKTELAKAVIVCTGSAPKKAGFKGEDEFFGK-- 132

Query: 113 GVHY--------IRDVADADALISSLEKAKKVVVVGGGYIGMEVA------AAAVGWKLD 158
           GV           ++              K+V V+GGG   +E A       + +     
Sbjct: 133 GVSTCATCDGFFYKN--------------KEVAVLGGGDTALEEALYLANICSKI----- 173

Query: 159 TTIIFPENH----------LLQRLFTPSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDG 207
             +I    H           ++++              +N  ++ +  AS+  +  G   
Sbjct: 174 -YLI----HRRDEFRAAPSTVEKVK-------------KNEKIELITSASVDEVY-GDKM 214

Query: 208 RVAAVKL--EDGST--IDADTIVIGIGAKPTVSPFERVGLNSSV-----GGIQVDGQFRT 258
            VA VK+  +DGS   ++   I   +G        ++            G + VD + +T
Sbjct: 215 GVAGVKVKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLKMQT 274

Query: 259 RMPGIFAIGDVA 270
            + G+FA GD+ 
Sbjct: 275 SVAGLFAAGDLR 286

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} Length = 325

 Score = 52.9 bits (128), Expect = 6e-08
 Identities = 50/250 (20%), Positives = 82/250 (32%), Gaps = 81/250 (32%)

Query: 60  GIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASR--FP--EKIGGY 110
           G ++   D V  +  +  +      +       +  ++I+ATG    +   P  +   G 
Sbjct: 79  GAKVEM-DEVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPRKLGIPGEDNFWGK 137

Query: 111 LPGVHY--------IRDVADADALISSLEKAKKVVVVGGGYIGMEVA------AAAVGWK 156
             GV           +               KKVVV+GGG   +E        A  V   
Sbjct: 138 --GVSTCATCDGFFYKG--------------KKVVVIGGGDAAVEEGMFLTKFADEV--- 178

Query: 157 LDTTIIFPENH----------LLQRLFTPSLAQRYEQLYQQNG-VKFVKGASIKNLEAGS 205
              T+I    H             R F              N  +KF+   +++  E   
Sbjct: 179 ---TVI----HRRDTLRANKVAQARAF-------------ANPKMKFIWDTAVE--EIQG 216

Query: 206 DGRVAAVKLED-----GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRM 260
              V+ VKL +      S +  D + I IG  P  +  +        G + V  +  T +
Sbjct: 217 ADSVSGVKLRNLKTGEVSELATDGVFIFIGHVPNTAFVKDTVSLRDDGYVDVRDEIYTNI 276

Query: 261 PGIFAIGDVA 270
           P +FA GDV+
Sbjct: 277 PMLFAAGDVS 286

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671

 Score = 50.4 bits (121), Expect = 7e-07
 Identities = 36/225 (16%), Positives = 74/225 (32%), Gaps = 62/225 (27%)

Query: 50  RQTPEWY----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE 105
            +T  +Y    +  G+ +     VT+  ++             +   I+A+G      P 
Sbjct: 425 YETLRYYRRMIEVTGVTLKLNHTVTADQLQA------------FDETILASGIVPRTPP- 471

Query: 106 KIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVA---------------A 150
                + G+ + + ++  D L        KV ++G G IG + A                
Sbjct: 472 -----IDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAG 526

Query: 151 AAVGWKLDTTIIFP---------------ENHLLQRLFT-------PSLAQRYEQLYQQN 188
               W +D+++                  +  +LQR  +        +    +       
Sbjct: 527 FCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSR 586

Query: 189 GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 233
           GVK + G S + ++   D  +  V   +   +  D +VI  G +P
Sbjct: 587 GVKMIPGVSYQKID---DDGLHVVINGETQVLAVDNVVICAGQEP 628

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Length = 456

 Score = 49.4 bits (119), Expect = 1e-06
 Identities = 48/213 (22%), Positives = 79/213 (37%), Gaps = 32/213 (15%)

Query: 88  KYGSLIVATGCTASRFPEKIGGYLPGVHY--------IRDVADADALISSLE----KAKK 135
           K+ +++VATG   +R  +  G  L  +           +                   K 
Sbjct: 207 KHVAVLVATGVYKARDIKAPGSGLGNIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKH 266

Query: 136 VVVVGGGYIGMEVAAAAV--GWKLDTTI-IFPENHLLQRLFTPSLAQR--YEQLYQQNGV 190
           VVV+GGG   M+    A+  G      +      ++       + A+    E ++Q    
Sbjct: 267 VVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRKNMPGSQREVAHAEEEGVEFIWQAAPE 326

Query: 191 KF--------VKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVSP--F 238
            F        V+   I    A + GR     +E GS  T+ AD ++  +G +P   P  F
Sbjct: 327 GFTGDTVVTGVRAVRIHLGVADATGRQTPQVIE-GSEFTVQADLVIKALGFEPEDLPNAF 385

Query: 239 ERVGLNSSV-GGIQVD-GQFRTRMPGIFAIGDV 269
           +   L  +  G + VD     T M G+FA GD+
Sbjct: 386 DEPELKVTRWGTLLVDHRTKMTNMDGVFAAGDI 418

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 24/164 (14%), Positives = 50/164 (30%), Gaps = 24/164 (14%)

Query: 93  IVATGCTASRFPEKIGGY--LPGV-HYIRDVADA-DALISSLEKAKKVVVVGGG--YIGM 146
           I+ATG   +        +  +PG    + D       +    +  K+VV++     ++  
Sbjct: 484 IIATGARWNTDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAP 543

Query: 147 EVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS- 205
            +A        + TI+   +      FT        +L+ +  V+ +       +E G  
Sbjct: 544 SLAEKLATAGHEVTIVSGVHLANYMHFTLEYPNMMRRLH-ELHVEELGDHFCSRIEPGRM 602

Query: 206 ----------------DGRVAAVKLEDGSTIDADTIVIGIGAKP 233
                            G            I+ D++V+  G   
Sbjct: 603 EIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHS 646

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369

 Score = 47.5 bits (113), Expect = 4e-06
 Identities = 38/213 (17%), Positives = 71/213 (33%), Gaps = 22/213 (10%)

Query: 69  VTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADAL 126
           VT+I  +    T+ T +        + VATG               G+HY  ++ D D  
Sbjct: 111 VTNISADDAYYTIATTTETY-HADYIFVATGDYNFPKKPFK----YGIHY-SEIEDFDNF 164

Query: 127 ISSLEKAKKVVVVGGGYIGMEVA------AAAVGWKLDTTIIFPENHLLQRLFTPSLAQR 180
                   + VV+GG   G + A       + +     TT +   +       +P   QR
Sbjct: 165 -----NKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQR 219

Query: 181 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTID-ADTIVIGIGAKPTVSPFE 239
              +  + G +          +   +     +  + G ++      ++  G   T +P  
Sbjct: 220 LGNVI-KQGARIEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDATKNPIV 278

Query: 240 RVGLNSSVGGIQVDGQFR-TRMPGIFAIGDVAA 271
           +    ++   I++      TR P IF IG    
Sbjct: 279 QQLFVTTNQDIKLTTHDESTRYPNIFMIGATVE 311

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} Length = 335

 Score = 47.1 bits (113), Expect = 5e-06
 Identities = 47/237 (19%), Positives = 92/237 (38%), Gaps = 57/237 (24%)

Query: 60  GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR--FP--EKIGGYLPG 113
           G ++  +D V S+ +     +++T  G+  +  ++I+A G  A     P  +++ G   G
Sbjct: 85  GADLRMED-VESVSLHGPLKSVVTADGQTHRARAVILAMGAAARYLQVPGEQELLGR--G 141

Query: 114 VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVA------AAAVGWKLDTTIIFPENH 167
           V      A  D       + + + V+GGG   ME A      A +V      T++    H
Sbjct: 142 VSS---CATCDGFFF---RDQDIAVIGGGDSAMEEATFLTRFARSV------TLV----H 185

Query: 168 ----------LLQRLF-TPSLAQRYE-QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE 215
                     +L R      +       +   +G   V G  +++   G++         
Sbjct: 186 RRDEFRASKIMLDRARNNDKIRFLTNHTVVAVDGDTTVTGLRVRDTNTGAE--------- 236

Query: 216 DGSTIDADTIVIGIGAKPTVSPFE-RVGLNSSVGGIQVDGQF-RTRMPGIFAIGDVA 270
             +T+    + + IG +P        + ++   G + V G+   T +PG+FA GD+ 
Sbjct: 237 --TTLPVTGVFVAIGHEPRSGLVREAIDVDPD-GYVLVQGRTTSTSLPGVFAAGDLV 290

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* Length = 456

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 2/70 (2%)

Query: 201 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRM 260
           L +   GRVAA    +   + A  +V  +G +    P   +  +   G I   G      
Sbjct: 294 LVSDGSGRVAAKDTGEREELPAQLVVRSVGYRG--VPTPGLPFDDQSGTIPNVGGRINGS 351

Query: 261 PGIFAIGDVA 270
           P  + +G + 
Sbjct: 352 PNEYVVGWIK 361

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* Length = 333

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 54/242 (22%), Positives = 86/242 (35%), Gaps = 59/242 (24%)

Query: 60  GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR--FP-EKIGGYLPGV 114
           G  +  +  VT +D   +   L T+S  +L   ++I+A G  A R  F        + G 
Sbjct: 84  GTTIFTET-VTKVDFSSKPFKLFTDSKAILAD-AVILAIGAVAKRLSFVGSG---EVLGG 138

Query: 115 HYIRDV---ADADALISSLEKAKKVVVVGGGYIGMEVA------AAAVGWKLDTTIIFPE 165
            + R +   A  D   + + + K + V+GGG   ME A       + V       II   
Sbjct: 139 FWNRGISACAVCDGA-APIFRNKPLAVIGGGDSAMEEANFLTKYGSKV------YII--- 188

Query: 166 NH----------LLQRLF-----TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA 210
            H          + QR                + Y       + G  +KN+  G      
Sbjct: 189 -HRRDAFRASKIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDV---- 243

Query: 211 AVKLEDGSTIDADTIVIGIGAKPTVSPFE-RVGLNSSVGGIQVD-GQFRTRMPGIFAIGD 268
                  S +    +   IG +P     +  V L+S  G +    G  +T +PG+FA GD
Sbjct: 244 -------SDLKVSGLFFAIGHEPATKFLDGGVELDSD-GYVVTKPGTTQTSVPGVFAAGD 295

Query: 269 VA 270
           V 
Sbjct: 296 VQ 297

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* Length = 320

 Score = 40.9 bits (97), Expect = 4e-04
 Identities = 53/251 (21%), Positives = 91/251 (36%), Gaps = 78/251 (31%)

Query: 60  GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR--FP--EKIGGYLPG 113
             E+I+ D +  +D++ +   L  ++G+     +LI+ATG +A     P  E   G   G
Sbjct: 76  ETEIIF-DHINKVDLQNRPFRLNGDNGEYTC-DALIIATGASARYLGLPSEEAFKGR--G 131

Query: 114 VHYIRDVADADALISS-------LEKAKKVVVVGGGYIGMEVA------AAAVGWKLDTT 160
           V             S+         + +KV V+GGG   +E A      A+ V       
Sbjct: 132 V-------------SACATSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEV------H 172

Query: 161 IIFPENH----------LLQRLFTPSLAQRYEQLYQQNGV------KFVKGASIKNLEAG 204
           +I    H          L++RL              +           V G  +++ +  
Sbjct: 173 LI----HRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNS 228

Query: 205 SDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQF-----RTR 259
                     ++  ++D   + + IG  P  + FE   L    G I+V         +T 
Sbjct: 229 ----------DNIESLDVAGLFVAIGHSPNTAIFEGQ-LELENGYIKVQSGIHGNATQTS 277

Query: 260 MPGIFAIGDVA 270
           +PG+FA GDV 
Sbjct: 278 IPGVFAAGDVM 288

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* Length = 463

 Score = 40.4 bits (94), Expect = 7e-04
 Identities = 31/234 (13%), Positives = 65/234 (27%), Gaps = 59/234 (25%)

Query: 92  LIVATGCTASRFPEKIGGYLPG---VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEV 148
           L+V+ G    R P+            H+ + +        S  K  K+ ++GGG    E 
Sbjct: 184 LVVSPG-GTPRIPQVFRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEA 242

Query: 149 AAAAVGWKLDTTI--------IFP--ENHLLQRLFTPS---------------------- 176
                                + P  ++  +  +F P                       
Sbjct: 243 FIDLNDSYPSVQADMILRASALKPADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHN 302

Query: 177 ----------LAQRYEQLYQQN-----GVKFVKGASIKNLEAGSDG---RVAAVKLEDGS 218
                     + + Y   Y+Q         F    +++   A + G    +      + S
Sbjct: 303 TNYSVVDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATATAQGIELALRDAGSGELS 362

Query: 219 TIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRM-----PGIFAIG 267
               D +++  G +  +       L   +G  ++   +R +        I+A G
Sbjct: 363 VETYDAVILATGYERQLHRQLLEPLAEYLGDHEIGRDYRLQTDERCKVAIYAQG 416

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	414
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	100.0
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	100.0
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	100.0
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	100.0
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	100.0
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	100.0
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	100.0
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	100.0
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	100.0
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	100.0
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	100.0
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	100.0
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	100.0
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	100.0
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	100.0
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	100.0
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	100.0
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	100.0
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	100.0
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	100.0
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	100.0
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	100.0
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	100.0
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	100.0
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	100.0
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	100.0
1ojt_A	482	Surface protein; redox-active center, glycolysis,	100.0
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	100.0
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	100.0
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	100.0
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	100.0
1fec_A	490	Trypanothione reductase; redox-active center, oxid	100.0
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	100.0
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	100.0
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	100.0
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	100.0
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	100.0
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	100.0
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	100.0
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	100.0
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	100.0
4dna_A	463	Probable glutathione reductase; structural genomic	100.0
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	100.0
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	100.0
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	100.0
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	100.0
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	100.0
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	100.0
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	99.98
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	99.97
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	99.97
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	99.97
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	99.97
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.97
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.97
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.97
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	99.97
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	99.97
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	99.97
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	99.96
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	99.96
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	99.96
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	99.96
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	99.96
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	99.96
3r9u_A	315	Thioredoxin reductase; structural genomics, center	99.96
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	99.96
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	99.96
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	99.95
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.95
4fk1_A	304	Putative thioredoxin reductase; structural genomic	99.95
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	99.95
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	99.94
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	99.94
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.94
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	99.93
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	99.92
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	99.92
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	99.92
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	99.91
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	99.91
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	99.9
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.9
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	99.88
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	99.88
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.87
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.85
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	99.77
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.77
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.73
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.67
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	99.52
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.29
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	99.19
2bry_A	497	NEDD9 interacting protein with calponin homology a	99.08
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.86
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.83
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.73
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	98.71
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	98.71
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.69
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.69
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	98.68
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.68
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.67
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.67
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.66
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.66
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.64
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.63
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	98.62
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.61
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.6
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.6
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.59
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.56
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.54
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.54
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.54
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.53
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.53
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	98.53
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.53
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.51
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.51
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.51
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.51
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.51
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.51
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.5
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.49
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	98.49
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.48
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.45
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.45
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.45
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.44
3dme_A	369	Conserved exported protein; structural genomics, P	98.43
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.43
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.42
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.42
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.41
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	98.4
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.38
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.37
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.36
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	98.36
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.35
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	98.35
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.35
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.34
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.34
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.33
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.32
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	98.32
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.31
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	98.31
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	98.3
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	98.3
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.3
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.28
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	98.27
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	98.26
3atr_A	453	Conserved archaeal protein; saturating double bond	98.26
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.25
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.23
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.23
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	98.22
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.21
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.21
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.2
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.2
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	98.2
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.19
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.17
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.17
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.16
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.15
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.13
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	98.13
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.12
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.1
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.1
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.09
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	98.09
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	98.08
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.08
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.08
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.08
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.07
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.07
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	98.06
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.05
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.05
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.05
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.04
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.03
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.03
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.01
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	98.01
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.01
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.0
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.0
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.0
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.0
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	97.99
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	97.98
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	97.98
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	97.98
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	97.98
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	97.96
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	97.96
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	97.95
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	97.95
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.94
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.94
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.93
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	97.93
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.93
4dna_A	463	Probable glutathione reductase; structural genomic	97.93
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	97.92
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.92
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	97.91
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.91
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	97.91
1ojt_A	482	Surface protein; redox-active center, glycolysis,	97.9
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	97.89
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	97.88
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.88
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	97.87
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.87
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.87
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.85
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	97.83
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.79
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	97.77
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.76
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	97.73
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	97.7
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.7
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.67
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	97.66
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	97.66
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	97.62
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	97.59
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	97.54
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	97.52
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	97.47
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	97.45
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	97.4
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	97.36
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.34
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	97.33
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	97.31
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	97.29
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	97.28
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	97.26
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	97.21
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	97.18
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	97.11
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	97.09
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	97.08
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	97.07
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	96.84
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	96.76
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	96.75
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	96.62
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	96.51
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	96.49
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	96.48
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	96.46
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.07
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	95.6
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	95.52
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	95.5
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	95.42
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	95.37
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	95.36
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	95.34
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	95.24
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	95.21
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	95.19
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	95.16
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	95.15
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	95.11
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	95.08
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	95.02
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	94.87
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	94.85
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	94.8
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	94.78
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	94.74
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	94.72
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	94.59
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	94.54
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	94.52
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	94.4
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	94.34
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	94.14
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	94.11
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	94.0
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	93.97
1id1_A	153	Putative potassium channel protein; RCK domain, E.	93.89
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	93.79
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	93.79
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	93.72
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	93.7
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	93.66
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	93.61
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	93.56
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	93.42
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	93.34
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	93.27
2cul_A	232	Glucose-inhibited division protein A-related PROT	93.23
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	93.21
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	93.17
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	93.15
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	92.98
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	92.96
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	92.95
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	92.88
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	92.73
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	92.52
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	92.47
3dme_A	369	Conserved exported protein; structural genomics, P	92.44
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	92.43
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	92.29
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	92.09
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	91.88
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	91.75
3c85_A	183	Putative glutathione-regulated potassium-efflux S	91.64
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	91.62
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	91.36
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	91.34
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	91.25
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	90.85
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	90.83
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	90.78
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	90.75
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	90.68
4ezb_A	317	Uncharacterized conserved protein; structural geno	90.55
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	90.31
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	90.12
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	89.91
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	89.59
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	89.37
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	89.3
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	89.16
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	89.06
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	88.95
2bry_A	497	NEDD9 interacting protein with calponin homology a	88.91
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	88.89
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	88.89
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	88.88
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	88.66
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	88.47
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	88.31
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	88.27
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	88.26
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	88.25
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	88.15
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	88.0
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	87.93
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	87.81
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	87.71
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	87.68
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	87.66
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	87.62
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	87.61
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	87.46
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	87.44
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	87.39
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	87.38
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	87.16
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	87.16
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	86.9
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	86.9
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	86.67
3atr_A	453	Conserved archaeal protein; saturating double bond	86.63
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	86.62
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	86.55
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	86.54
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	86.44
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	86.42
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	86.4
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	86.33
2f00_A	491	UDP-N-acetylmuramate--L-alanine ligase; amide bond	86.31
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	86.31
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	86.28
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	86.25
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	86.21
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	86.17
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	86.14
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	86.09
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	86.02
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	85.99
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	85.81
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	85.79
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	85.61
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	85.61
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	85.58
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	85.57
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	85.51
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	85.49
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	85.3
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	85.27
1p3d_A	475	UDP-N-acetylmuramate--alanine ligase; alpha/beta p	85.18
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	85.15
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	85.05
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	84.9
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	84.85
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	84.71
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	84.64
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	84.54
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	84.43
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	84.42
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	84.38
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	84.36
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	84.25
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	84.15
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	84.15
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	84.14
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	84.06
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	84.05
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	83.99
2gk4_A	232	Conserved hypothetical protein; alpha-beta-alpha s	83.99
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	83.94
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	83.93
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	83.87
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	83.84
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	83.81
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	83.73
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	83.73
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	83.66
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	83.62
4g65_A	461	TRK system potassium uptake protein TRKA; structur	83.61
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	83.52
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	83.5
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	83.49
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	83.48
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	83.46
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	83.4
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	83.39
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	83.23
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	83.17
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	83.12
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	83.06
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	82.96
1u7z_A	226	Coenzyme A biosynthesis bifunctional protein coabc	82.75
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	82.7
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	82.66
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	82.58
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	82.55
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	82.54
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	82.49
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	82.46
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	82.44
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	82.36
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	82.3
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	82.28
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	82.25
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	82.24
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	82.23
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	82.19
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	82.05
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	82.02
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	81.99
3l07_A	285	Bifunctional protein fold; structural genomics, ID	81.89
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	81.75
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	81.74
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	81.73
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	81.71
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	81.69
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	81.63
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	81.62
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	81.6
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	81.58
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	81.54
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	81.48
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	81.38
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	81.36
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	81.32
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	81.32
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	81.29
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	81.29
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	81.27
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	81.25
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	81.2
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	81.2
1j6u_A	469	UDP-N-acetylmuramate-alanine ligase MURC; structur	81.19
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	81.17
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	81.02
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	81.01
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	80.99
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	80.97
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	80.96
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	80.93

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=100.00  E-value=7.8e-56  Score=437.89  Aligned_cols=372  Identities=29%  Similarity=0.477  Sum_probs=332.3

Q ss_pred             CCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCCCEEEeC
Q 014997            3 DGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITN   82 (414)
Q Consensus         3 ~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~   82 (414)
                      +++||||++++++||+||+|++.++.+.. ...++           ..+..+++.+.+++++. ++|+.++++.+.|.++
T Consensus        26 ~~~V~lie~~~~~~y~~~~l~~~~l~~~~-~~~~~-----------~~~~~~~~~~~~i~~~~-~~v~~id~~~~~v~~~   92 (404)
T 3fg2_P           26 PGRIALINDEKHLPYQRPPLSKAYLKSGG-DPNSL-----------MFRPEKFFQDQAIELIS-DRMVSIDREGRKLLLA   92 (404)
T ss_dssp             CSCEEEECCSSSSSBCSGGGGTGGGGSCC-CTTSS-----------BSSCHHHHHHTTEEEEC-CCEEEEETTTTEEEES
T ss_pred             CCCEEEEeCCCCCCCCCccCCHHHHCCCC-CHHHc-----------cCCCHHHHHhCCCEEEE-EEEEEEECCCCEEEEC
Confidence            56899999999999999999998887632 23333           35788999999999999 8999999999999999


Q ss_pred             CCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEE
Q 014997           83 SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTII  162 (414)
Q Consensus        83 ~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv  162 (414)
                      +|+++.||+||+|||++|+. |.++|.+.++++++++..++..+...+..+++++|||+|++|+|+|..|+++|.+|+++
T Consensus        93 ~g~~~~~d~lvlAtG~~p~~-~~i~g~~~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv  171 (404)
T 3fg2_P           93 SGTAIEYGHLVLATGARNRM-LDVPNASLPDVLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAATARAKGLEVDVV  171 (404)
T ss_dssp             SSCEEECSEEEECCCEEECC-CCSTTTTSTTEECCSSHHHHHHHHHHGGGCSEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCEEECCEEEEeeCCCccC-CCCCCCCCCcEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence            99999999999999998864 55678778899999999999999888888999999999999999999999999999999


Q ss_pred             eeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhcC
Q 014997          163 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG  242 (414)
Q Consensus       163 ~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~g  242 (414)
                      ++.++++++.+++++.+.+.+.+++.||++++++.|+++..+ ++.+..|.+++|++++||.||+|+|++|+.++++++|
T Consensus       172 ~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~v~~V~~~dG~~i~aD~Vv~a~G~~p~~~l~~~~g  250 (404)
T 3fg2_P          172 ELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAE-GDRVTGVVLSDGNTLPCDLVVVGVGVIPNVEIAAAAG  250 (404)
T ss_dssp             CSSSSTTTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTSCEEECSEEEECCCEEECCHHHHHTT
T ss_pred             eCCCcchhhccCHHHHHHHHHHHHhCCcEEEECCEEEEEEec-CCcEEEEEeCCCCEEEcCEEEECcCCccCHHHHHhCC
Confidence            999999988899999999999999999999999999999854 4667789999999999999999999999999999999


Q ss_pred             CcccCCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCCCceeeeccCCC
Q 014997          243 LNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYE  322 (414)
Q Consensus       243 l~~~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~~~~~~~~~p~~~~~~~~~~  322 (414)
                      +..++ +|.||++++|+.|+|||+|||+..+.+..|...++++|.+|..||+.+|+||++. ..+|..+||||+++|+..
T Consensus       251 l~~~~-Gi~vd~~~~t~~~~iya~GD~a~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~-~~~~~~~p~~~~~~~~~~  328 (404)
T 3fg2_P          251 LPTAA-GIIVDQQLLTSDPHISAIGDCALFESVRFGETMRVESVQNATDQARCVAARLTGD-AKPYDGYPWFWSDQGDDK  328 (404)
T ss_dssp             CCBSS-SEEECTTSBCSSTTEEECGGGEEEEETTTTEEECCCSHHHHHHHHHHHHHHTTTC-CCCCCCCCEEEEEETTEE
T ss_pred             CCCCC-CEEECCCcccCCCCEEEeecceeecCccCCceeeehHHHHHHHHHHHHHHHhCCC-CCCCCCCCceEeEECCcE
Confidence            99874 5999999999999999999999988777788888999999999999999999974 467999999999999864


Q ss_pred             CCCcceeeeEeecCCC--cEEEEcCCC-CcEEEEEEeCCEEEEEEeecCChHHhhHHHHHHhCCCCCChhhhcCCCcHHH
Q 014997          323 GSPRKVWWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEE  399 (414)
Q Consensus       323 g~~~~~~~~~~G~~~~--~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  399 (414)
                             ++++|....  +.+.+++.+ .+|.++|+++|+|+|+++ +|+++++..+++||+.+..+++..|.++..-..
T Consensus       329 -------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  400 (404)
T 3fg2_P          329 -------LQIVGLTAGFDQVVIRGSVAERSFSAFCYKAGKLIGIES-VNRAADHVFGRKILPLDKSVTPEQAADLSFDLK  400 (404)
T ss_dssp             -------EEEEECCTTCCEEEEEEETTTTEEEEEEEETTEEEEEEE-ESCHHHHHHHHHHTTTTCCCCHHHHHCTTSCHH
T ss_pred             -------EEEEeCCCCCCEEEEEecCCCCcEEEEEEECCEEEEEEE-eCCHHHHHHHHHHHHcCCCCCHHHhcCCCCChH
Confidence                   899997643  566677764 689999999999999996 899999999999999999999988888776443

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=5.3e-56  Score=440.62  Aligned_cols=370  Identities=29%  Similarity=0.509  Sum_probs=330.8

Q ss_pred             CCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCCCEEEeC
Q 014997            3 DGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITN   82 (414)
Q Consensus         3 ~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~   82 (414)
                      +++||||++++++||+||+|++.++.+. ....++           ..+..+++.+.+++++++++|+.+|++.+.|.++
T Consensus        34 ~~~V~lie~~~~~~y~~~~l~~~~~~~~-~~~~~~-----------~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~  101 (415)
T 3lxd_A           34 EGRVLVIGREPEIPYERPPLSKEYLARE-KTFERI-----------CIRPAQFWEDKAVEMKLGAEVVSLDPAAHTVKLG  101 (415)
T ss_dssp             CSCEEEEESSSSCCBCSGGGGTTTTTTS-SCSGGG-----------BSSCHHHHHHTTEEEEETCCEEEEETTTTEEEET
T ss_pred             CCCEEEEecCCCCCcCcccCCHHHHcCC-CCHHHh-----------ccCCHHHHHHCCcEEEeCCEEEEEECCCCEEEEC
Confidence            4679999999999999999999787653 222222           3577899999999999999999999999999999


Q ss_pred             CCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcC-CCeEEEECCChHHHHHHHHHHhCCCcEEE
Q 014997           83 SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK-AKKVVVVGGGYIGMEVAAAAVGWKLDTTI  161 (414)
Q Consensus        83 ~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~-~~~vvVvGgG~~g~e~A~~l~~~g~~Vtl  161 (414)
                      +|+.+.||+||||||++|+. |.++|.+.++++++++.+++..+...+.. +++++|||+|++|+|+|..|+++|.+|++
T Consensus       102 ~g~~~~~d~lvlAtG~~~~~-~~i~g~~~~~v~~~~~~~d~~~l~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtv  180 (415)
T 3lxd_A          102 DGSAIEYGKLIWATGGDPRR-LSCVGADLAGVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEAAAVLTKFGVNVTL  180 (415)
T ss_dssp             TSCEEEEEEEEECCCEECCC-CBTTSSCCBTEECCCSHHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEeeEEEEccCCccCC-CCCCCccccCEEEEcCHHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEE
Confidence            99999999999999999874 55678777899999999999998887777 99999999999999999999999999999


Q ss_pred             EeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhc
Q 014997          162 IFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERV  241 (414)
Q Consensus       162 v~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~  241 (414)
                      +++.++++++.+++.+.+.+.+.+++.||++++++.|+++..+ ++.+..|.+++|++++||.||+|+|.+|++++++.+
T Consensus       181 v~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~v~~v~l~dG~~i~aD~Vv~a~G~~p~~~l~~~~  259 (415)
T 3lxd_A          181 LEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGD-GTKVTGVRMQDGSVIPADIVIVGIGIVPCVGALISA  259 (415)
T ss_dssp             EESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEES-SSBEEEEEESSSCEEECSEEEECSCCEESCHHHHHT
T ss_pred             EecCCchhhhhcCHHHHHHHHHHHHhCCCEEEECCEEEEEEec-CCcEEEEEeCCCCEEEcCEEEECCCCccChHHHHhC
Confidence            9999999988899999999999999999999999999999854 567778999999999999999999999999999999


Q ss_pred             CCcccCCCEEEcCCCCCCCCcEEEEccccccCCccC-CcccccccHHHHHHHHHHHHHHHhcCCCCCCCCCCceeeeccC
Q 014997          242 GLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMY-DRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFE  320 (414)
Q Consensus       242 gl~~~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~-~~~~~~~~~~~A~~~a~~aa~~i~~~~~~~~~~~p~~~~~~~~  320 (414)
                      |+..+ ++|.||++++|+.|+|||+|||+..+.... |...++++|.+|..||+.+|+||++. ..+|..+||||+++|+
T Consensus       260 gl~~~-~gi~vd~~~~t~~~~iyA~GD~a~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~-~~~~~~~p~~~~~~~~  337 (415)
T 3lxd_A          260 GASGG-NGVDVDEFCRTSLTDVYAIGDCAAHANDFADGAVIRLESVQNANDMATAAAKDICGA-PVPYKATPWFWSNQYD  337 (415)
T ss_dssp             TCCCS-SSEECCTTCBCSSTTEEECGGGEEEECGGGTTCEECCCSHHHHHHHHHHHHHHHTTC-CCCCCCCCEEEEEETT
T ss_pred             CCCcC-CCEEECCCCCcCCCCEEEEEeeeeecCcccCCcceeechHHHHHHHHHHHHHHhcCC-CCCCCCCCeeEeeeCC
Confidence            99887 569999999999999999999999887666 77888999999999999999999974 4679999999999998


Q ss_pred             CCCCCcceeeeEeecCCC--cEEEEcCCC-CcEEEEEEeCCEEEEEEeecCChHHhhHHHHHHhCCCCCChhhhcCCCc
Q 014997          321 YEGSPRKVWWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASS  396 (414)
Q Consensus       321 ~~g~~~~~~~~~~G~~~~--~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  396 (414)
                      ..       ++++|...+  +.+.+++.+ .+|.++|+++|+|+|+++ +|+++++..+++||+.+..+++..|.++..
T Consensus       338 ~~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  408 (415)
T 3lxd_A          338 LK-------LQTVGLSTGHDNAVLRGDPATRSFSVVYLKGGKVVALDC-VNMVKDYVQGKKLVEARAQIAPEQLADAGV  408 (415)
T ss_dssp             EE-------EEEEECCTTCSEEEEEEEGGGTEEEEEEEETTEEEEEEE-ESCHHHHHHHHHHHHHTCCCCHHHHTCTTS
T ss_pred             cE-------EEEEeCCCCCCEEEEEecCCCCeEEEEEEECCEEEEEEE-ECChHHHHHHHHHHHCCCCCCHHHhcCCCC
Confidence            64       899997643  566677764 689999999999999996 899999999999999999999988887765

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=100.00  E-value=7.8e-56  Score=438.60  Aligned_cols=368  Identities=27%  Similarity=0.453  Sum_probs=327.0

Q ss_pred             CCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCCCEEEeC
Q 014997            3 DGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITN   82 (414)
Q Consensus         3 ~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~   82 (414)
                      +++||||++++++||+||+|++.++.+... ...+            .+..+++++.+++++++++|+.+|++.+.|.+.
T Consensus        27 ~~~V~li~~~~~~~y~~~~l~~~~~~g~~~-~~~~------------~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~   93 (410)
T 3ef6_A           27 EGRISLIGDEPHLPYDRPSLSKAVLDGSLE-RPPI------------LAEADWYGEARIDMLTGPEVTALDVQTRTISLD   93 (410)
T ss_dssp             CSEEEEEECSSSSSBCSGGGGTHHHHTSSS-SCCB------------SSCTTHHHHTTCEEEESCCEEEEETTTTEEEET
T ss_pred             CCeEEEEECCCCCCcCCccccHHHhCCCCC-HHHh------------cCCHHHHHHCCCEEEeCCEEEEEECCCCEEEEC
Confidence            568999999999999999999987765322 2211            356789999999999999999999999999999


Q ss_pred             CCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEE
Q 014997           83 SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTII  162 (414)
Q Consensus        83 ~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv  162 (414)
                      +|+++.||+||||||++|+. |.++|.+.++++++++..++..+...+..+++++|||+|++|+|+|..|+++|.+|+++
T Consensus        94 ~g~~~~~d~lvlAtG~~p~~-~~ipG~~~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv  172 (410)
T 3ef6_A           94 DGTTLSADAIVIATGSRART-MALPGSQLPGVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATTARKLGLSVTIL  172 (410)
T ss_dssp             TSCEEECSEEEECCCEEECC-CCCTTTTSTTEECCCSHHHHHHHHHHCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCEEECCEEEEccCCcccC-CCCCCccccceEEeccHHHHHHHHHHhccCCeEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence            99999999999999999874 55678778899999999999999888888999999999999999999999999999999


Q ss_pred             eeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhcC
Q 014997          163 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG  242 (414)
Q Consensus       163 ~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~g  242 (414)
                      ++.++++++.+++++.+.+.+.+++.||++++++.|++++.+  +.+..+.+++|++++||.||+|+|.+|++++++++|
T Consensus       173 ~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~~~~v~~~dg~~i~aD~Vv~a~G~~p~~~l~~~~g  250 (410)
T 3ef6_A          173 EAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGE--GQLEQVMASDGRSFVADSALICVGAEPADQLARQAG  250 (410)
T ss_dssp             CSSSSSSHHHHCHHHHHHHHHHHHHHTCEEECSCCEEEEECS--SSCCEEEETTSCEEECSEEEECSCEEECCHHHHHTT
T ss_pred             ecCCccchhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEecc--CcEEEEEECCCCEEEcCEEEEeeCCeecHHHHHhCC
Confidence            999999987889999999999999999999999999999853  345578999999999999999999999999999999


Q ss_pred             CcccCCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCCCceeeeccCCC
Q 014997          243 LNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYE  322 (414)
Q Consensus       243 l~~~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~~~~~~~~~p~~~~~~~~~~  322 (414)
                      +..+ ++|.||++++|+.|+|||+|||+.++... |...++++|..|..||+.+|+||++. ..+|..+||||+++|++.
T Consensus       251 l~~~-~gi~vd~~~~t~~~~IyA~GD~a~~~~~~-g~~~~~~~~~~A~~qg~~aa~~i~g~-~~~~~~~p~~~~~~~~~~  327 (410)
T 3ef6_A          251 LACD-RGVIVDHCGATLAKGVFAVGDVASWPLRA-GGRRSLETYMNAQRQAAAVAAAILGK-NVSAPQLPVSWTEIAGHR  327 (410)
T ss_dssp             CCBS-SSEECCTTSBCSSTTEEECGGGEEEEBTT-SSEECCCCHHHHHHHHHHHHHHHTTC-CCCCCBCCEEEEEETTEE
T ss_pred             CccC-CeEEEccCeeECCCCEEEEEcceeccCCC-CCeeeechHHHHHHHHHHHHHHHcCC-CCCCCCCCeeEEEECCce
Confidence            9987 57999999999999999999999987655 77777889999999999999999974 467899999999999864


Q ss_pred             CCCcceeeeEeecCCC--cEEEEcCCC-CcEEEEEEeCCEEEEEEeecCChHHhhHHHHHHhCCCCCChhhhcCCCcH
Q 014997          323 GSPRKVWWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSV  397 (414)
Q Consensus       323 g~~~~~~~~~~G~~~~--~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  397 (414)
                             ++++|...+  +.+.+++.+ ..|.+||+++|+|+|+++ +|+++++..+++||+.+..+++..|.++..-
T Consensus       328 -------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~  397 (410)
T 3ef6_A          328 -------MQMAGDIEGPGDFVSRGMPGSGAALLFRLQERRIQAVVA-VDAPRDFALATRLVEARAAIEPARLADLSNS  397 (410)
T ss_dssp             -------EEEESCSSSSSEEEEESCTTSSSEEEEEEETTEEEEEEE-ESCHHHHHHHHHHHHHTCBCCHHHHHCTTSC
T ss_pred             -------EEEEcCCCCCCEEEEEeeCCCCeEEEEEEECCEEEEEEE-ECChHHHHHHHHHHhCCCCCCHHHhcCCCCC
Confidence                   888997653  566777765 679999999999999997 8999999999999999999999888877653

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=100.00  E-value=2.3e-53  Score=416.82  Aligned_cols=349  Identities=21%  Similarity=0.300  Sum_probs=301.2

Q ss_pred             CCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCCCEEEe
Q 014997            2 ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLIT   81 (414)
Q Consensus         2 ~~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~   81 (414)
                      ++++||||++|+++||+||+||+ ++.+. ...+++           ..+..+++++++|+++++++|+.||+++++|++
T Consensus        31 ~~~~itlie~~~~~~y~~~~l~~-~l~g~-~~~~~l-----------~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~   97 (385)
T 3klj_A           31 KCDDITMINSEKYLPYYRPRLNE-IIAKN-KSIDDI-----------LIKKNDWYEKNNIKVITSEFATSIDPNNKLVTL   97 (385)
T ss_dssp             TCSCEEEECSSSSCCBCGGGHHH-HHHSC-CCGGGT-----------BSSCHHHHHHTTCEEECSCCEEEEETTTTEEEE
T ss_pred             CCCEEEEEECCCCCCcccChhhH-HHcCC-CCHHHc-----------cCCCHHHHHHCCCEEEeCCEEEEEECCCCEEEE
Confidence            57899999999999999999998 56552 222333           467889999999999999999999999999999


Q ss_pred             CCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEE
Q 014997           82 NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTI  161 (414)
Q Consensus        82 ~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtl  161 (414)
                      ++|+++.||+||||||++|+. |.++|.+  +++++++.+++..+...+..+++++|||+|++|+|+|..|+++|.+||+
T Consensus        98 ~~g~~~~yd~lvlAtG~~p~~-p~i~G~~--~v~~~~~~~d~~~l~~~l~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtv  174 (385)
T 3klj_A           98 KSGEKIKYEKLIIASGSIANK-IKVPHAD--EIFSLYSYDDALKIKDECKNKGKAFIIGGGILGIELAQAIIDSGTPASI  174 (385)
T ss_dssp             TTSCEEECSEEEECCCEEECC-CCCTTCS--CEECCSSHHHHHHHHHHHHHHSCEEEECCSHHHHHHHHHHHHHTCCEEE
T ss_pred             CCCCEEECCEEEEecCCCcCC-CCCCCCC--CeEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence            999999999999999999874 5567755  8999999999999888777789999999999999999999999999999


Q ss_pred             EeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhc
Q 014997          162 IFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERV  241 (414)
Q Consensus       162 v~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~  241 (414)
                      +++.++++++.+++++.+.+.+.+++.||++++++.++++               |++++||.||+++|++|++++++++
T Consensus       175 v~~~~~~l~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i---------------g~~~~~D~vv~a~G~~p~~~~~~~~  239 (385)
T 3klj_A          175 GIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNFEEM---------------GDLIRSSCVITAVGVKPNLDFIKDT  239 (385)
T ss_dssp             ECSSSSSCTTTSCHHHHHHHHHHHHTTTCEEECSCCGGGC---------------HHHHHHSEEEECCCEEECCGGGTTS
T ss_pred             EEcCCccchhhcCHHHHHHHHHHHHhCCCEEEeCCEEEEc---------------CeEEecCeEEECcCcccChhhhhhc
Confidence            9999999998899999999999999999999999877655               4578999999999999999999999


Q ss_pred             CCcccCCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCC-CCceeeeccC
Q 014997          242 GLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDY-LPYFYSRVFE  320 (414)
Q Consensus       242 gl~~~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~~~~~~~~-~p~~~~~~~~  320 (414)
                      |+..+ ++|.||++++|+.|+|||+|||+.++...      ..+|..|..||+.||+||++. ..+|.. +|++|+++|+
T Consensus       240 gl~~~-~gi~vd~~~~t~~~~IyA~GD~a~~~~~~------~~~~~~A~~qg~~aa~~i~g~-~~~~~~~~~~~~~~~~~  311 (385)
T 3klj_A          240 EIASK-RGILVNDHMETSIKDIYACGDVAEFYGKN------PGLINIANKQGEVAGLNACGE-DASYSEIIPSPILKVSG  311 (385)
T ss_dssp             CCCBS-SSEEECTTCBCSSTTEEECGGGEEETTBC------CCCHHHHHHHHHHHHHHHTTC-CCCCCCCCCCCEEEETT
T ss_pred             CCCcC-CCEEECCCcccCCCCEEEEEeeEecCCCc------ccHHHHHHHHHHHHHHHhcCC-CcCCCCCCCcEEEEeCC
Confidence            99887 46999999999999999999999876532      237889999999999999974 456765 6999999998


Q ss_pred             CCCCCcceeeeEeecCCC---cEEEEcCCCCcEEEEEEeCCEEEEEEeecCChHHhhHHHHHHhCCCCCChhhhcCCCcH
Q 014997          321 YEGSPRKVWWQFFGDNVG---ETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSV  397 (414)
Q Consensus       321 ~~g~~~~~~~~~~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  397 (414)
                      ..       ++++|....   +.+.+...+..|.++|+++|+|+|+++ +|+......++++|+++.++++-     +++
T Consensus       312 ~~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~-~g~~~~~~~~~~~i~~~~~~~~~-----~~~  378 (385)
T 3klj_A          312 IS-------IISCGDIENNKPSKVFRSTQEDKYIVCMLKENKIDAAAV-IGDVSLGTKLKKAIDSSKSFDNI-----SSL  378 (385)
T ss_dssp             EE-------EEEESCCTTCCCSEEEEEECSSCEEEEEEETTEEEEEEE-ESCHHHHHHHHHHHHTTCBCSCC-----SCH
T ss_pred             Cc-------EEEEcCCCCCCCeEEEEECCCCeEEEEEEECCEEEEEEE-ECCcHHHHHHHHHHHcCCCcccc-----cCH
Confidence            64       788887653   334442224679999999999999997 79998888999999999877655     888


Q ss_pred             HHHHH
Q 014997          398 EEALE  402 (414)
Q Consensus       398 ~~~~~  402 (414)
                      +|.+.
T Consensus       379 ~E~~~  383 (385)
T 3klj_A          379 DAILN  383 (385)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            88775

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=100.00  E-value=2.3e-51  Score=408.90  Aligned_cols=376  Identities=28%  Similarity=0.480  Sum_probs=322.5

Q ss_pred             CCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCCCEEEeC
Q 014997            3 DGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITN   82 (414)
Q Consensus         3 ~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~   82 (414)
                      +++|+||++++..||+||++++.++.+. .....+           ..+..+++++.+|+++++++|+.++++.+.|.++
T Consensus        29 ~~~V~lie~~~~~~~~~~~l~~~~~~~~-~~~~~~-----------~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~   96 (431)
T 1q1r_A           29 EGNIRLVGDATVIPHHLPPLSKAYLAGK-ATAESL-----------YLRTPDAYAAQNIQLLGGTQVTAINRDRQQVILS   96 (431)
T ss_dssp             CSEEEEECSCCSCCBCSGGGGTTTTTTC-SCSGGG-----------BSSCHHHHHHTTEEEECSCCEEEEETTTTEEEET
T ss_pred             CCCEEEEECCCCCCCcCCCCcHHHhCCC-CChHHh-----------cccCHHHHHhCCCEEEeCCEEEEEECCCCEEEEC
Confidence            4589999999999999999999777652 222222           2456788999999999999999999999999999


Q ss_pred             CCcEEecCeEEEccCCCCCCCCCCCCCCCCC---EEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcE
Q 014997           83 SGKLLKYGSLIVATGCTASRFPEKIGGYLPG---VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDT  159 (414)
Q Consensus        83 ~g~~~~yd~LviAtG~~~~~~~~~~g~~~~g---v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~V  159 (414)
                      +|+++.||+||+|||++|+. |.++|.+.++   ++++++.+++..+...+..+++++|||+|++|+|+|..|+++|.+|
T Consensus        97 ~g~~~~~d~lviAtG~~p~~-~~i~G~~~~~~~~v~~~~~~~d~~~l~~~l~~~~~vvViGgG~~g~E~A~~l~~~G~~V  175 (431)
T 1q1r_A           97 DGRALDYDRLVLATGGRPRP-LPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHV  175 (431)
T ss_dssp             TSCEEECSEEEECCCEEECC-CGGGTTHHHHSTTEEESSSHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEE
T ss_pred             CCCEEECCEEEEcCCCCccC-CCCCCcccCCCceEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEE
Confidence            99899999999999999864 5556755556   9999999999888887778999999999999999999999999999


Q ss_pred             EEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEec-CCCcEEEEEeCCCcEEecCEEEEccCCcCCChhh
Q 014997          160 TIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG-SDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF  238 (414)
Q Consensus       160 tlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~-~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l  238 (414)
                      +++++.++++++.+++++.+.+.+.+++.||++++++.|+++... +++.+..+.+.+|++++||.||+|+|.+|+++++
T Consensus       176 tlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~~p~~~l~  255 (431)
T 1q1r_A          176 TLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCELA  255 (431)
T ss_dssp             EEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCCEEECCHHH
T ss_pred             EEEEeCCccccchhhHHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCEEEECCCCCcCcchh
Confidence            999999999987789999999999999999999999999999852 3466667889999999999999999999999999


Q ss_pred             hhcCCcccCCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCCCceeeec
Q 014997          239 ERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRV  318 (414)
Q Consensus       239 ~~~gl~~~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~~~~~~~~~p~~~~~~  318 (414)
                      +++|+..+ ++|.||++++|+.|+|||+|||+..+.+..|...++++|..|..||+.+|+||++. ..+|+.+||+|+++
T Consensus       256 ~~~gl~~~-~gi~Vd~~~~ts~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~-~~~~~~~p~~~~~~  333 (431)
T 1q1r_A          256 SAAGLQVD-NGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAILCGK-VPRDEAAPWFWSDQ  333 (431)
T ss_dssp             HHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEEEETTTTEEEECCSHHHHHHHHHHHHHHHTTC-CCCCCCCCEEEEEE
T ss_pred             hccCCCCC-CCEEECCCcccCCCCEEEEEeEEEEccccCCceEeeCHHHHHHHHHHHHHHHhcCC-CCCCCCCCeEEEEE
Confidence            99999887 46999999999999999999999987666677777889999999999999999974 45788899999999


Q ss_pred             cCCCCCCcceeeeEeecCCC--cEEEEcCCC-CcEEEEEEeCCEEEEEEeecCChHHhhHHHHHHhCCCCCChhhhcCCC
Q 014997          319 FEYEGSPRKVWWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQAS  395 (414)
Q Consensus       319 ~~~~g~~~~~~~~~~G~~~~--~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  395 (414)
                      |+..       ++++|....  +.+..++.+ ..|.+++.++++|+|+++ +|.......++.++..+..++..+|.++.
T Consensus       334 ~~~~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~-~g~~~~~~~~~~~i~~~~~~~~~~l~~~~  405 (431)
T 1q1r_A          334 YEIG-------LKMVGLSEGYDRIIVRGSLAQPDFSVFYLQGDRVLAVDT-VNRPVEFNQSKQIITDRLPVEPNLLGDES  405 (431)
T ss_dssp             TTEE-------EEEEECCTTCSEEEEEEETTTTEEEEEEEETTEEEEEEE-ESCHHHHHHHHHHHHTTCCCCHHHHTCTT
T ss_pred             CCce-------EEEEeCCCCCCEEEEEccCCCCeEEEEEEeCCEEEEEEE-ECChHHHHHHHHHHHCCCCCCHHHhhCCC
Confidence            8753       778886543  345566654 468888889999999997 78888999999999999999998887776


Q ss_pred             cHHHHH
Q 014997          396 SVEEAL  401 (414)
Q Consensus       396 ~~~~~~  401 (414)
                      .....+
T Consensus       406 ~~~~~~  411 (431)
T 1q1r_A          406 VPLKEI  411 (431)
T ss_dssp             SCHHHH
T ss_pred             CCHHHH
Confidence            554444

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=100.00  E-value=4.4e-51  Score=404.16  Aligned_cols=367  Identities=26%  Similarity=0.409  Sum_probs=313.0

Q ss_pred             CCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCCCEEEeC
Q 014997            3 DGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITN   82 (414)
Q Consensus         3 ~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~   82 (414)
                      +++|+||+++++.||.+|++++.++.+..  ..++           .++   ++++.+++++++++|+.++++.++|+++
T Consensus        32 ~~~V~lie~~~~~~~~~~~~~~~~~~~~~--~~~~-----------~~~---~~~~~~v~~~~~~~v~~i~~~~~~v~~~   95 (408)
T 2gqw_A           32 QGLITVVGDEAERPYDRPPLSKDFMAHGD--AEKI-----------RLD---CKRAPEVEWLLGVTAQSFDPQAHTVALS   95 (408)
T ss_dssp             CSCEEEEESSCSCCBCSGGGGTHHHHHCC--GGGS-----------BCC---CTTSCSCEEEETCCEEEEETTTTEEEET
T ss_pred             CCeEEEEECCCCCcccCCCCCHHHhCCCc--hhhh-----------hHH---HHHHCCCEEEcCCEEEEEECCCCEEEEC
Confidence            46799999999999999999987765422  2221           122   5677899999998899999999999999


Q ss_pred             CCcEEecCeEEEccCCCCCCCCCC-CCCCCCCEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEE
Q 014997           83 SGKLLKYGSLIVATGCTASRFPEK-IGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTI  161 (414)
Q Consensus        83 ~g~~~~yd~LviAtG~~~~~~~~~-~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtl  161 (414)
                      +|+++.||+||||||++|+. |++ +|.+ ++++++++.+++..+...+..+++++|||+|++|+|+|..|+++|.+|++
T Consensus        96 ~g~~~~~d~lviAtG~~~~~-~~i~~G~~-~~v~~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtl  173 (408)
T 2gqw_A           96 DGRTLPYGTLVLATGAAPRA-LPTLQGAT-MPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSL  173 (408)
T ss_dssp             TSCEEECSEEEECCCEEECC-CGGGTTCS-SCEEECCSHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEECCEEEECCCCCCCC-CCccCCCC-CcEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEE
Confidence            99899999999999999864 555 6766 78999999999988887777789999999999999999999999999999


Q ss_pred             EeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhc
Q 014997          162 IFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERV  241 (414)
Q Consensus       162 v~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~  241 (414)
                      +++.++++++.+++++.+.+.+.+++.||++++++.|++++ +  +   .+.+.+|++++||.||+|+|.+|++++++++
T Consensus       174 v~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~-~--~---~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~  247 (408)
T 2gqw_A          174 VETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSV-D--G---VVLLDDGTRIAADMVVVGIGVLANDALARAA  247 (408)
T ss_dssp             EESSSSSSTTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEE-T--T---EEEETTSCEEECSEEEECSCEEECCHHHHHH
T ss_pred             EEeCCcccccccCHHHHHHHHHHHHHcCcEEEeCCEEEEEE-C--C---EEEECCCCEEEcCEEEECcCCCccHHHHHhC
Confidence            99999999877899999999999999999999999999997 2  3   5778899999999999999999999999999


Q ss_pred             CCcccCCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCCCceeeeccCC
Q 014997          242 GLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEY  321 (414)
Q Consensus       242 gl~~~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~~~~~~~~~p~~~~~~~~~  321 (414)
                      |++.++ +|.||+++||+.|+|||+|||+..+.+..|...+.++|..|..||+.+|+||++....+|..+||+|+++|+.
T Consensus       248 gl~~~~-gi~Vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~p~~~~~~~~~  326 (408)
T 2gqw_A          248 GLACDD-GIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVDPTAPGYAELPWYWSDQGAL  326 (408)
T ss_dssp             TCCBSS-SEECCTTCBCSSTTEEECGGGEEEEETTTTEEECCCCHHHHHHHHHHHHHHHHCTTSCCCCCCCEEEEEETTE
T ss_pred             CCCCCC-CEEECCCCccCCCCEEEEEEEEEecCccCCceeeccHHHHHHHHHHHHHHHhcCCCCCcCCCCCeEEEEECCc
Confidence            998874 5999999999999999999999987655566666779999999999999999974432788899999999976


Q ss_pred             CCCCcceeeeEeec-CCCcEEEEcCCC---CcEEEEEEeCCEEEEEEeecCChHHhhHHHHHHhCCCCCChhhhcCCCcH
Q 014997          322 EGSPRKVWWQFFGD-NVGETIEIGNFD---PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSV  397 (414)
Q Consensus       322 ~g~~~~~~~~~~G~-~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  397 (414)
                      .       ++++|. ...+.+..++..   ..|.++|.++++|+|+++ ++...++..++.+|+.+..+++..+.++...
T Consensus       327 ~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~-~g~~~~~~~~~~~i~~~~~~~~~~l~~~~~~  398 (408)
T 2gqw_A          327 R-------IQVAGLASGDEEIVRGEVSLDAPKFTLIELQKGRIVGATC-VNNARDFAPLRRLLAVGAKPDRAALADPATD  398 (408)
T ss_dssp             E-------EEEEECSCCSEEEEESCCCSSSCCEEEEEEETTEEEEEEE-ESCHHHHHHHHHHHHTTCCCCHHHHHCTTCC
T ss_pred             e-------EEEECCCCCCEEEEEccCCCCCCeEEEEEEeCCEEEEEEE-ECChHHHHHHHHHHHCCCCCChHHhcCCCCC
Confidence            4       778886 222455566643   468889999999999997 7888888999999999999999888887765


Q ss_pred             HHHHH
Q 014997          398 EEALE  402 (414)
Q Consensus       398 ~~~~~  402 (414)
                      ...+.
T Consensus       399 ~~~~~  403 (408)
T 2gqw_A          399 LRKLA  403 (408)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            54443

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=100.00  E-value=4.3e-49  Score=398.84  Aligned_cols=379  Identities=22%  Similarity=0.354  Sum_probs=290.9

Q ss_pred             CCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCC---CCCCCccccCCCCCCCCHhHH---------HHcCCeEEcCCcE
Q 014997            2 ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPA---RLPGFHTCVGSGGERQTPEWY---------KEKGIEMIYQDPV   69 (414)
Q Consensus         2 ~~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~---~l~~~~~~~g~~~~~~~~~~~---------~~~~i~~~~~~~V   69 (414)
                      +..+|+||++++++||.||+|||.++.+......   .+++++... ..+.+++.+++         .+.+|+++++++|
T Consensus        35 ~g~~V~lie~~~~~~y~r~~lsk~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~gv~~~~g~~v  113 (493)
T 1m6i_A           35 PGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKE-RSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKV  113 (493)
T ss_dssp             TTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCE-EESBSSCGGGSBCTTTTTTSTTCEEEEEETCCE
T ss_pred             CCCeEEEEeCCCCCCCCCCCCCHHhhcCCccchhhccccccccccc-ccccccchHhhcchhhhhhhhcCCeEEEcCCEE
Confidence            4689999999999999999999987765221000   000000000 00011222222         2578999999999


Q ss_pred             EEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCC----CCCEEEecCHHHHHHHHHhhcCCCeEEEECCChHH
Q 014997           70 TSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY----LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIG  145 (414)
Q Consensus        70 ~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~----~~gv~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g  145 (414)
                      +.||++.++|++++|+++.||+||||||++|+.+| .++..    .++++++++..++..+...+..+++++|||+|++|
T Consensus       114 ~~id~~~~~V~~~~g~~i~yd~lviATGs~p~~~~-~~~~~~~~~~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~iG  192 (493)
T 1m6i_A          114 VQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLS-AIDRAGAEVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLG  192 (493)
T ss_dssp             EEEEGGGTEEEETTSCEEEEEEEEECCCEEECCCH-HHHTSCHHHHHTEEECCSHHHHHHHHHHHHHCSEEEEECCSHHH
T ss_pred             EEEECCCCEEEECCCCEEECCEEEECCCCCCCCCC-CcccccccccCceEEEcCHHHHHHHHHHhhcCCeEEEECCCHHH
Confidence            99999999999999999999999999999987544 23321    35788999999998888777789999999999999


Q ss_pred             HHHHHHHHh----CCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEe
Q 014997          146 MEVAAAAVG----WKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTID  221 (414)
Q Consensus       146 ~e~A~~l~~----~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~  221 (414)
                      +|+|..|++    .|.+|+++++.+.++.+.+++.+.+.+.+.++++||++++++.|++++.+ ++.+ .+.+.+|++++
T Consensus       193 ~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~~l~~~~~~~~~~~l~~~GV~v~~~~~V~~i~~~-~~~~-~v~l~dG~~i~  270 (493)
T 1m6i_A          193 SELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVS-SGKL-LIKLKDGRKVE  270 (493)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEECSCCEEEEEEE-TTEE-EEEETTSCEEE
T ss_pred             HHHHHHHHhhhhhcCCEEEEEecCcccccccCCHHHHHHHHHHHHhcCCEEEeCCEEEEEEec-CCeE-EEEECCCCEEE
Confidence            999999876    47899999998888887889999999999999999999999999999753 3333 68889999999


Q ss_pred             cCEEEEccCCcCCChhhhhcCCccc--CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHH
Q 014997          222 ADTIVIGIGAKPTVSPFERVGLNSS--VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKA  299 (414)
Q Consensus       222 ~D~vi~a~G~~p~~~~l~~~gl~~~--~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~  299 (414)
                      ||.||+|+|.+||+++++++|++.+  +|+|.||++||| .|+|||+|||+..+....|.. ++++|.+|..||+.||+|
T Consensus       271 aD~Vv~a~G~~pn~~l~~~~gl~~~~~~ggi~Vd~~l~t-~~~IyA~GD~a~~~~~~~g~~-~~~~~~~A~~qg~~aa~n  348 (493)
T 1m6i_A          271 TDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQA-RSNIWVAGDAACFYDIKLGRR-RVEHHDHAVVSGRLAGEN  348 (493)
T ss_dssp             ESEEEECCCEEECCTTHHHHTCCBCTTTCSEECCTTCEE-ETTEEECGGGEEEEETTTEEE-CCCCHHHHHHHHHHHHHH
T ss_pred             CCEEEECCCCCccHHHHHHcCCccccCCCcEEECCCccc-CCCeeEeeeeEeccCcccCcc-ccchHHHHHHHHHHHHHH
Confidence            9999999999999999999999876  379999999998 699999999999776555543 577999999999999999


Q ss_pred             HhcCCCCCCCCCCceeeeccCCCCCCc----ceeeeEeecCCC-----c------------------------EEEE---
Q 014997          300 LLSAQTHTYDYLPYFYSRVFEYEGSPR----KVWWQFFGDNVG-----E------------------------TIEI---  343 (414)
Q Consensus       300 i~~~~~~~~~~~p~~~~~~~~~~g~~~----~~~~~~~G~~~~-----~------------------------~~~~---  343 (414)
                      |++ ...+|.+.||||++++...+...    ...++++|....     .                        ....   
T Consensus       349 i~g-~~~~~~~~~~~~s~~~~~~~~~~~g~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (493)
T 1m6i_A          349 MTG-AAKPYWHQSMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEASEITIPPST  427 (493)
T ss_dssp             HTS-CCCCCCCCCEEEEESSTTCEEEEEECCCTTSCEEEEEECCCTTCSHHHHHHHHSCSCHHHHSCSCCCC--------
T ss_pred             hcC-CCCCcCCcCceeeeeccCcceEEEeccCCCcceEEeeccccccccccccccccccccccccccccccccccccccc
Confidence            996 45689999999999983211000    001333432100     0                        0000   


Q ss_pred             -c-------C-CCCcEEEEEEeCCEEEEEEeecCChHHhhHHHHHHhCCCCCCh
Q 014997          344 -G-------N-FDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDK  388 (414)
Q Consensus       344 -~-------~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~  388 (414)
                       |       + ...+|.+||+++|+|+|+++ +|+++++..+++||+.+..+++
T Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~li~~~~~~~~  480 (493)
T 1m6i_A          428 PAVPQAPVQGEDYGKGVIFYLRDKVVVGIVL-WNIFNRMPIARKIIKDGEQHED  480 (493)
T ss_dssp             ------------CCEEEEEEEETTEEEEEEE-ESCCSCHHHHHHHHHHCCBCSC
T ss_pred             ccccccccccccCCcEEEEEEeCCEEEEEEE-ecCcchHHHHHHHHhCCCCCCC
Confidence             1       1 12567889999999999996 8999999999999988887655

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=2e-45  Score=358.52  Aligned_cols=332  Identities=23%  Similarity=0.396  Sum_probs=266.1

Q ss_pred             CcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCCCEEEeCC
Q 014997            4 GRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS   83 (414)
Q Consensus         4 g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~~   83 (414)
                      |+|+||+++++.+|.||+|++ ++.+. ....++           ..+..+++++.+|+++++++|+.+|++.++|+ .+
T Consensus        31 g~V~lie~~~~~~~~~~~l~~-~~~g~-~~~~~~-----------~~~~~~~~~~~~v~~~~g~~v~~id~~~~~V~-~~   96 (367)
T 1xhc_A           31 YEVTVIDKEPVPYYSKPMLSH-YIAGF-IPRNRL-----------FPYSLDWYRKRGIEIRLAEEAKLIDRGRKVVI-TE   96 (367)
T ss_dssp             SEEEEECSSSSCCCCSTTHHH-HHTTS-SCGGGG-----------CSSCHHHHHHHTEEEECSCCEEEEETTTTEEE-ES
T ss_pred             CCEEEEECCCCCccccchhHH-HHhCC-CCHHHh-----------ccCCHHHHHhCCcEEEECCEEEEEECCCCEEE-EC
Confidence            389999999999999999987 55442 222222           34567889999999999989999999999988 67


Q ss_pred             CcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEe
Q 014997           84 GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF  163 (414)
Q Consensus        84 g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~  163 (414)
                      |+++.||+||||||++|+. |.++|  .++++++++..++..+.+.+.++++++|||+|++|+|+|..|+++|.+||+++
T Consensus        97 g~~~~~d~lViATGs~p~~-p~i~G--~~~v~~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~  173 (367)
T 1xhc_A           97 KGEVPYDTLVLATGARARE-PQIKG--KEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIH  173 (367)
T ss_dssp             SCEEECSEEEECCCEEECC-CCSBT--GGGEECCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CcEEECCEEEECCCCCCCC-CCCCC--cCCEEEEcCHHHHHHHHHHhhcCCcEEEECCCHHHHHHHHHHHhCCCEEEEEe
Confidence            8889999999999999874 55566  56788888999888887766667999999999999999999999999999999


Q ss_pred             eCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhcCC
Q 014997          164 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL  243 (414)
Q Consensus       164 ~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl  243 (414)
                      +.+++++  +++++.+.+.+.+++.||+++++++|++++.+      .+.+++|+ +++|.|++|+|++|++++++++++
T Consensus       174 ~~~~~l~--~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~------~v~~~~g~-i~~D~vi~a~G~~p~~~ll~~~gl  244 (367)
T 1xhc_A          174 RGAMFLG--LDEELSNMIKDMLEETGVKFFLNSELLEANEE------GVLTNSGF-IEGKVKICAIGIVPNVDLARRSGI  244 (367)
T ss_dssp             SSSCCTT--CCHHHHHHHHHHHHHTTEEEECSCCEEEECSS------EEEETTEE-EECSCEEEECCEEECCHHHHHTTC
T ss_pred             CCCeecc--CCHHHHHHHHHHHHHCCCEEEcCCEEEEEEee------EEEECCCE-EEcCEEEECcCCCcCHHHHHhCCC
Confidence            9999987  89999999999999999999999999999621      57788887 999999999999999999999999


Q ss_pred             cccCCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCCCceee-eccCCC
Q 014997          244 NSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYS-RVFEYE  322 (414)
Q Consensus       244 ~~~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~~~~~~~~~p~~~~-~~~~~~  322 (414)
                      +.+ ++|.||+++||+.|+|||+|||+......      ...|..|..||+.+|+||++. ..+|+..+++|+ .+++. 
T Consensus       245 ~~~-~gi~Vd~~~~t~~~~IyA~GD~a~~~~~~------~~~~~~A~~qg~~aa~~i~g~-~~~~~~~~~~~~~~~~~~-  315 (367)
T 1xhc_A          245 HTG-RGILIDDNFRTSAKDVYAIGDCAEYSGII------AGTAKAAMEQARVLADILKGE-PRRYNFKFRSTVFKFGKL-  315 (367)
T ss_dssp             CBS-SSEECCTTSBCSSTTEEECGGGEEBTTBC------CCSHHHHHHHHHHHHHHHTTC-CCCCCSSCCEEEEEETTE-
T ss_pred             CCC-CCEEECCCcccCCCCEEEeEeeeecCCCC------ccHHHHHHHHHHHHHHHhcCC-CccCCCCCCceEEEECCc-
Confidence            887 56999999999999999999999764321      126888999999999999964 356666555544 44443 


Q ss_pred             CCCcceeeeEeecCCCcEEEEcCCCCcEEEEEEeCCEEEEEEeecCChHHhhHHHHHHh
Q 014997          323 GSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLAR  381 (414)
Q Consensus       323 g~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~  381 (414)
                            .++.+|....+....    ..|.++++++++|+|+++ ++.......++++|.
T Consensus       316 ------~~~~vG~~~~~~~~~----~~~~k~~~~~~~ilG~~~-~g~~~~~~~~~~~i~  363 (367)
T 1xhc_A          316 ------QIAIIGNTKGEGKWI----EDNTKVFYENGKIIGAVV-FNDIRKATKLEKEIL  363 (367)
T ss_dssp             ------EEEEEECCSSCEEEE----ETTEEEEC-----CEEEE-ESCHHHHHHHC----
T ss_pred             ------eEEEECCCCCCCccc----ceEEEEEEECCEEEEEEE-ECChHHHHHHHHHHh
Confidence                  267788765532211    236788888899999997 788888888888873

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=100.00  E-value=2.9e-45  Score=365.34  Aligned_cols=370  Identities=20%  Similarity=0.288  Sum_probs=285.3

Q ss_pred             CCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCCCEEEe
Q 014997            2 ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLIT   81 (414)
Q Consensus         2 ~~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~   81 (414)
                      ++.+|+||+++++++|.||+|++ ++.+........          +..+..+++++++|+++.+++|+.||++.+.+.+
T Consensus        24 ~~~~V~lie~~~~~~~~~~~l~~-~~~~~~~~~~~~----------~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~~~~   92 (437)
T 4eqs_A           24 KESDIIIFEKDRDMSFANCALPY-VIGEVVEDRRYA----------LAYTPEKFYDRKQITVKTYHEVIAINDERQTVSV   92 (437)
T ss_dssp             SSSCEEEEESSSCSSBCGGGHHH-HHTTSSCCGGGT----------BCCCHHHHHHHHCCEEEETEEEEEEETTTTEEEE
T ss_pred             CCCcEEEEeCCCCCCCCcchhHH-HHcCCccchhhh----------hhcCHHHHHHhcCCEEEeCCeEEEEEccCcEEEE
Confidence            35789999999999999999986 443311111111          1245567889999999999999999999998776


Q ss_pred             CC-----CcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhh--cCCCeEEEECCChHHHHHHHHHHh
Q 014997           82 NS-----GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL--EKAKKVVVVGGGYIGMEVAAAAVG  154 (414)
Q Consensus        82 ~~-----g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~--~~~~~vvVvGgG~~g~e~A~~l~~  154 (414)
                      .+     +.++.||+||||||++|+. |.++   .++++++++++++..+...+  .++++++|||||++|+|+|..+++
T Consensus        93 ~~~~~~~~~~~~yd~lVIATGs~p~~-p~i~---g~~~~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~ig~E~A~~l~~  168 (437)
T 4eqs_A           93 LNRKTNEQFEESYDKLILSPGASANS-LGFE---SDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYE  168 (437)
T ss_dssp             EETTTTEEEEEECSEEEECCCEEECC-CCCC---CTTEECCSSHHHHHHHHHHHHHHTCCEEEEECCSHHHHHHHHHHHH
T ss_pred             EeccCCceEEEEcCEEEECCCCcccc-cccc---CceEEeeccHHHHHHHHHhhhccCCcEEEEECCccchhhhHHHHHh
Confidence            43     2368999999999999864 4333   36788899999988876654  357899999999999999999999


Q ss_pred             CCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997          155 WKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       155 ~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (414)
                      +|.+||++++.+++++ .+++++++.+.+.++++||++++++.|++++..      .+.+++|++++||.|++++|.+||
T Consensus       169 ~g~~Vtlv~~~~~ll~-~~d~~~~~~~~~~l~~~gV~i~~~~~v~~~~~~------~v~~~~g~~~~~D~vl~a~G~~Pn  241 (437)
T 4eqs_A          169 RGLHPTLIHRSDKINK-LMDADMNQPILDELDKREIPYRLNEEINAINGN------EITFKSGKVEHYDMIIEGVGTHPN  241 (437)
T ss_dssp             HTCEEEEEESSSCCST-TSCGGGGHHHHHHHHHTTCCEEESCCEEEEETT------EEEETTSCEEECSEEEECCCEEES
T ss_pred             cCCcceeeeeeccccc-cccchhHHHHHHHhhccceEEEeccEEEEecCC------eeeecCCeEEeeeeEEEEeceecC
Confidence            9999999999999987 589999999999999999999999999999743      678999999999999999999999


Q ss_pred             ChhhhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCC-CCC
Q 014997          235 VSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYD-YLP  312 (414)
Q Consensus       235 ~~~l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~~~~~~~-~~p  312 (414)
                      +++++.+|+..+ +|+|.||+++||++|||||+|||+..+....+.....+.+..|.+||+.+|+||++.....+. ..+
T Consensus       242 ~~~~~~~gl~~~~~G~I~vd~~~~Ts~p~IyA~GDva~~~~~~~~~~~~~~~a~~A~~~g~~~a~ni~g~~~~~~~~~~~  321 (437)
T 4eqs_A          242 SKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDTIEFKGFLG  321 (437)
T ss_dssp             CGGGTTSSCCCCTTSCEECCTTCBCSSTTEEECGGGEEEEBSSSSSEECCCSHHHHHHHHHHHHHHHHSCTTCCCCCBCC
T ss_pred             cHHHHhhhhhhccCCcEecCCCccCCCCCEEEEEEccCcccccCCccccchhHHHHHHHHHHHHHHHcCCCCccccccee
Confidence            999999999875 578999999999999999999999988877777777788999999999999999986544443 333


Q ss_pred             ceeeeccCCCCCCcceeeeEeecCCCc-------EEE--EcC---C----CCcEEEEEEe--CCEEEEEEeecCC-hHHh
Q 014997          313 YFYSRVFEYEGSPRKVWWQFFGDNVGE-------TIE--IGN---F----DPKIATFWID--SGKLKGVLVESGS-PEEF  373 (414)
Q Consensus       313 ~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~~~--~~~---~----~~~~~~~~~~--~~~~~g~~~~~~~-~~~~  373 (414)
                      ..+...++.       .+..+|..+.+       ...  ...   .    ..-+.++.++  +++|+|+++++.+ ++++
T Consensus       322 ~~~~~~~~p-------~ia~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilGa~~~g~~~a~e~  394 (437)
T 4eqs_A          322 NNIVKFFDY-------TFASVGVKPNELKQFDYKMVEVTQGAHANYYPGNSPLHLRVYYDTSNRQILRAAAVGKEGADKR  394 (437)
T ss_dssp             CEEEEETTE-------EEEEEESCGGGGGGSCEEEEEEEEESSCTTSSSCCEEEEEEEEETTTCBEEEEEEEESSSHHHH
T ss_pred             EEeeeeccc-------eEEEeeCCHHHHHhCCceEEEEecCCchhhcCCCCcEEEEEEEECCCCEEEEEEEECcCCHHHH
Confidence            333333322       14455554321       111  111   0    1125677765  5899999986544 6666


Q ss_pred             hH-HHHHHhCCCCCCh-hh--hcCCCcHHHH
Q 014997          374 QL-LPTLARSQPFVDK-AK--LQQASSVEEA  400 (414)
Q Consensus       374 ~~-~~~l~~~~~~~~~-~~--~~~~~~~~~~  400 (414)
                      .. +..+|+.+.++++ ..  +.-||+++++
T Consensus       395 i~~~~~ai~~~~t~~~l~~~~~~yhP~~s~~  425 (437)
T 4eqs_A          395 IDVLSMAMMNQLTVDELTEFEVAFAPPYSHP  425 (437)
T ss_dssp             HHHHHHHHHTTCBGGGGGGCCCCCCTTTCCS
T ss_pred             HHHHHHHHHcCCcHHHHhcCccccCCCCCch
Confidence            54 4456799988887 33  2335666554

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=100.00  E-value=3e-44  Score=360.03  Aligned_cols=380  Identities=21%  Similarity=0.272  Sum_probs=295.2

Q ss_pred             CCCcEEEEcCCCCCCCCCCCCCccccCCCCC--CCCCCCCCccccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCCCEE
Q 014997            2 ADGRLCIVSKEAYAPYERPALTKGYLFPLDK--KPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTL   79 (414)
Q Consensus         2 ~~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~--~~~~l~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~V   79 (414)
                      +..+|+||+++++.+|.+..++. ++.+...  ...++           .....+++++.+++++.+++|+.++++.+.|
T Consensus        24 ~g~~V~lie~~~~~~~~~~~~~~-~~~g~~~~~~~~~~-----------~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v   91 (452)
T 2cdu_A           24 PDADVTAYEMNDNISFLSCGIAL-YLGKEIKNNDPRGL-----------FYSSPEELSNLGANVQMRHQVTNVDPETKTI   91 (452)
T ss_dssp             TTCEEEEEESSSCCCBCGGGHHH-HHTTCBGGGCGGGG-----------BSCCHHHHHHTTCEEEESEEEEEEEGGGTEE
T ss_pred             cCCcEEEEECCCCCCcccccchh-hhcCCcccCCHHHh-----------hhcCHHHHHHcCCEEEeCCEEEEEEcCCCEE
Confidence            46789999999988887554432 3333111  11111           2456788899999999998999999888888


Q ss_pred             EeCC-----CcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHh
Q 014997           80 ITNS-----GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVG  154 (414)
Q Consensus        80 ~~~~-----g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~  154 (414)
                      .+.+     ++++.||+||||||++|+ .|.++|.+.+++++++++.++..+......+++++|||+|++|+|+|..|++
T Consensus        92 ~v~~~~~g~~~~~~~d~lviAtGs~p~-~p~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~  170 (452)
T 2cdu_A           92 KVKDLITNEEKTEAYDKLIMTTGSKPT-VPPIPGIDSSRVYLCKNYNDAKKLFEEAPKAKTITIIGSGYIGAELAEAYSN  170 (452)
T ss_dssp             EEEETTTCCEEEEECSEEEECCCEEEC-CCCCTTTTSTTEEECSSHHHHHHHHHHGGGCSEEEEECCSHHHHHHHHHHHT
T ss_pred             EEEecCCCceEEEECCEEEEccCCCcC-CCCCCCCCCCCEEEeCcHHHHHHHHHHhccCCeEEEECcCHHHHHHHHHHHh
Confidence            8754     467999999999999987 4556777667899999999999888877889999999999999999999999


Q ss_pred             CCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997          155 WKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       155 ~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (414)
                      +|.+|+++++.++++++.+++++.+.+.+.+++.||++++++.|++++.. ++.+..+.+ +|++++||.||+|+|++|+
T Consensus       171 ~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~~v~~v~~-~g~~i~~D~vv~a~G~~p~  248 (452)
T 2cdu_A          171 QNYNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEV-DDEIITKTL-DGKEIKSDIAILCIGFRPN  248 (452)
T ss_dssp             TTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEESSCEEEEEEE-TTEEEEEET-TSCEEEESEEEECCCEEEC
T ss_pred             cCCEEEEEEcCCchhhhhhhhhHHHHHHHHHHHCCCEEEcCCeeEEEEcC-CCeEEEEEe-CCCEEECCEEEECcCCCCC
Confidence            99999999999999987799999999999999999999999999999853 455544555 7789999999999999999


Q ss_pred             ChhhhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCCCc
Q 014997          235 VSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPY  313 (414)
Q Consensus       235 ~~~l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~~~~~~~~~p~  313 (414)
                      ++++++. +..+ +|+|.||+++||+.|+|||+|||+..+....+...+.+++..|..||+.+|+||++.........|+
T Consensus       249 ~~ll~~~-l~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~  327 (452)
T 2cdu_A          249 TELLKGK-VAMLDNGAIITDEYMHSSNRDIFAAGDSAAVHYNPTNSNAYIPLATNAVRQGRLVGLNLTEDKVKDMGTQSS  327 (452)
T ss_dssp             CGGGTTT-SCBCTTSCBCCCTTSBCSSTTEEECSTTBCEEETTTTEEECCCCHHHHHHHHHHHHHTSSSCCCCCCCBCCC
T ss_pred             HHHHHHh-hhcCCCCCEEECCCcCcCCCCEEEcceEEEeccccCCCeeecchHHHHHHHHHHHHHHhCCCCCcCCCccce
Confidence            9988777 7764 5779999999999999999999999766555555556689999999999999999743222344688


Q ss_pred             eeeeccCCCCCCcceeeeEeecCCCc-------EEE-----EcC--C----CCcEEEEEEe--CCEEEEEEeecC-ChHH
Q 014997          314 FYSRVFEYEGSPRKVWWQFFGDNVGE-------TIE-----IGN--F----DPKIATFWID--SGKLKGVLVESG-SPEE  372 (414)
Q Consensus       314 ~~~~~~~~~g~~~~~~~~~~G~~~~~-------~~~-----~~~--~----~~~~~~~~~~--~~~~~g~~~~~~-~~~~  372 (414)
                      +|+.+|+..       ++.+|....+       ...     .+.  .    ..-+.+++++  +++|+|++++.. ++.+
T Consensus       328 ~~~~~~~~~-------~~~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~~~~~  400 (452)
T 2cdu_A          328 SGLKLYGRT-------YVSTGINTALAKANNLKVSEVIIADNYRPEFMLSTDEVLMSLVYDPKTRVILGGALSSMHDVSQ  400 (452)
T ss_dssp             EEEEETTEE-------EEEEECCHHHHHHTTCCCEEEEEEEESSCTTBSCCCEEEEEEEECTTTCBEEEEEEEESSCCHH
T ss_pred             EEEEECCee-------eEeecCCHHHHHHcCCceEEEEEecCCccccCCCCceEEEEEEEECCCCEEEEEEEEcCccHHH
Confidence            889888643       6667754321       110     111  1    1135666664  589999998665 4555


Q ss_pred             h-hHHHHHHhCCCCCChhh---hcCCCcHHHHHHHH
Q 014997          373 F-QLLPTLARSQPFVDKAK---LQQASSVEEALEIA  404 (414)
Q Consensus       373 ~-~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~  404 (414)
                      + ..+..+|+.+.++++-.   +..||++.|++..+
T Consensus       401 ~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~~e~~~~~  436 (452)
T 2cdu_A          401 SANVLSVCIQNKNTIDDLAMVDMLFQPQFDRPFNYL  436 (452)
T ss_dssp             HHHHHHHHHHTTCBHHHHHHSCCCCCTTTCCSSCHH
T ss_pred             HHHHHHHHHHcCCCHHHHhhhhhccCCCCCchHHHH
Confidence            4 45667888888887733   46788888765443

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=100.00  E-value=3.8e-43  Score=353.91  Aligned_cols=386  Identities=22%  Similarity=0.328  Sum_probs=269.3

Q ss_pred             CCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHH-HcCCeEEcCCcEEEEeCCCCEEE
Q 014997            2 ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYK-EKGIEMIYQDPVTSIDIEKQTLI   80 (414)
Q Consensus         2 ~~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~-~~~i~~~~~~~V~~id~~~~~V~   80 (414)
                      +..+||||+++++++|.++.++. ++.+.......+...+     ....+..+++. +.+++++++++|+.++++.+.+.
T Consensus        27 ~g~~Vtvie~~~~~~~~~~gl~~-~~~g~~~~~~~~~~~~-----~~~~~~~~~~~~~~gi~~~~~~~V~~id~~~~~v~  100 (472)
T 3iwa_A           27 PEAHVTMIDQASRISYGGCGIPY-YVSGEVSNIESLQATP-----YNVVRDPEFFRINKDVEALVETRAHAIDRAAHTVE  100 (472)
T ss_dssp             TTSEEEEECCC-------------------------------------------------CEEECSEEEEEEETTTTEEE
T ss_pred             cCCCEEEEECCCcccccccccch-hhcCCCCchHHhcccc-----chhccCHHHHhhhcCcEEEECCEEEEEECCCCEEE
Confidence            46799999999999999888875 4444222111110000     00123445555 58999999999999999999888


Q ss_pred             eCC---Cc--EEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhc--CCCeEEEECCChHHHHHHHHHH
Q 014997           81 TNS---GK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAV  153 (414)
Q Consensus        81 ~~~---g~--~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~--~~~~vvVvGgG~~g~e~A~~l~  153 (414)
                      +.+   |+  .+.||+||||||++|. .|.++|.+.++++++++..++..+...+.  .+++++|||+|++|+|+|..|+
T Consensus       101 ~~~~~~g~~~~~~~d~lviAtG~~p~-~p~i~G~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~~g~e~A~~l~  179 (472)
T 3iwa_A          101 IENLRTGERRTLKYDKLVLALGSKAN-RPPVEGMDLAGVTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLA  179 (472)
T ss_dssp             EEETTTCCEEEEECSEEEECCCEEEC-CCSCTTTTSBTEEECCSHHHHHHHHHHCCTTSCSEEEEECCSHHHHHHHHHHH
T ss_pred             EeecCCCCEEEEECCEEEEeCCCCcC-CCCCCCCCCCCEEEeCCHHHHHHHHHHhhcCCCCEEEEECCCHHHHHHHHHHH
Confidence            765   65  7999999999999986 45567877789999999998888876663  4799999999999999999999


Q ss_pred             hC-CCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCc
Q 014997          154 GW-KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  232 (414)
Q Consensus       154 ~~-g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~  232 (414)
                      ++ |.+|+++++.++++++.+++++.+.+.+.+++.||++++++.|++++.. ++.+ .+.+.+|++++||.||+|+|++
T Consensus       180 ~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~v-~v~~~~g~~i~aD~Vv~a~G~~  257 (472)
T 3iwa_A          180 DMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLEGE-NGKV-ARVITDKRTLDADLVILAAGVS  257 (472)
T ss_dssp             HHHCCEEEEECSSSSSSTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEES-SSBE-EEEEESSCEEECSEEEECSCEE
T ss_pred             HhcCCcEEEEEccCcccccccCHHHHHHHHHHHHhcCCEEEeCCEEEEEEcc-CCeE-EEEEeCCCEEEcCEEEECCCCC
Confidence            99 9999999999999986789999999999999999999999999999863 4444 3778889999999999999999


Q ss_pred             CCChhhhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 014997          233 PTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYL  311 (414)
Q Consensus       233 p~~~~l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~~~~~~~~~  311 (414)
                      |++++++++|++.+ +|+|.||+++||+.|+|||+|||+..+....|.....+++..|..||+.+|+||++........+
T Consensus       258 p~~~l~~~~gl~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~  337 (472)
T 3iwa_A          258 PNTQLARDAGLELDPRGAIIVDTRMRTSDPDIFAGGDCVTIPNLVTGKPGFFPLGSMANRQGRVIGTNLADGDATFPGAV  337 (472)
T ss_dssp             ECCHHHHHHTCCBCTTCCEECCTTCBCSSTTEEECGGGEEEEBTTTSSEECCCCTTHHHHHHHHHHHHHTTCCCCCCCBC
T ss_pred             cCHHHHHhCCccCCCCCCEEECCCcccCCCCEEEeccceecccccCCceeecchHHHHHHHHHHHHHHhcCCCccCCCCC
Confidence            99998888899875 68899999999999999999999987766666655566788899999999999997544323456


Q ss_pred             CceeeeccCCCCCCcceeeeEeecCCCc-------E--EEEc---------CCCCcEEEEEEe--CCEEEEEEeecC---
Q 014997          312 PYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T--IEIG---------NFDPKIATFWID--SGKLKGVLVESG---  368 (414)
Q Consensus       312 p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~--~~~~---------~~~~~~~~~~~~--~~~~~g~~~~~~---  368 (414)
                      |++|+.+++..       ++.+|..+.+       .  ....         +...-+.++.++  +++|+|+++++.   
T Consensus       338 ~~~~~~~~~~~-------~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~~~  410 (472)
T 3iwa_A          338 GSWAVKLFEGS-------ASGAGLTVEGALREGYDAVNVHVEQFDRAHFYPEKTIMTLQLVVDRPTRRVLGIQGFSTLGD  410 (472)
T ss_dssp             CCEEEECSSCE-------EEEEECCHHHHHHTTCCEEEEEEEC-----------CEEEEEEEETTTCBEEEEEEEESCHH
T ss_pred             cceEEEECCce-------eEEEECCHHHHHHcCCceEEEEEecCCccCccCCCceEEEEEEEECCCCEEEEEEEECCCcc
Confidence            78888777643       5666754321       1  1000         001235677774  699999998555   


Q ss_pred             ChHH-hhHHHHHHhCCCCCChhh--hcCC-CcHHHHHHH
Q 014997          369 SPEE-FQLLPTLARSQPFVDKAK--LQQA-SSVEEALEI  403 (414)
Q Consensus       369 ~~~~-~~~~~~l~~~~~~~~~~~--~~~~-~~~~~~~~~  403 (414)
                      .+.+ +..+..+|+.+.+++.-.  ...+ |+++|+...
T Consensus       411 ~~~~~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~~~~~~  449 (472)
T 3iwa_A          411 ALTARINAVATMLASKPTVEDISNAEVVYSPPFASAMDI  449 (472)
T ss_dssp             HHHHHHHHHHHHHTTCCBHHHHHTCCCC--------CCH
T ss_pred             cHHHHHHHHHHHHHcCCCHHHHhcccccCCCCCCCcccH
Confidence            2234 445556778888877733  2343 778776543

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=100.00  E-value=6.8e-43  Score=350.11  Aligned_cols=373  Identities=18%  Similarity=0.235  Sum_probs=281.8

Q ss_pred             CCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCCCEEEe
Q 014997            2 ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLIT   81 (414)
Q Consensus         2 ~~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~   81 (414)
                      +..+|+||++++++.|.++.++. ++.+......++           .....+++++.+++++++++|+.+|++.+.+.+
T Consensus        26 ~g~~V~vie~~~~~g~~~~~~~~-~~~~~~~~~~~~-----------~~~~~~~~~~~gi~~~~~~~V~~id~~~~~v~v   93 (452)
T 3oc4_A           26 PQAEISLIDKQATVGYLSGGLSA-YFNHTINELHEA-----------RYITEEELRRQKIQLLLNREVVAMDVENQLIAW   93 (452)
T ss_dssp             SSSEEEEECSSSCCSSCCC----------------------------CCCCHHHHHHTTEEEECSCEEEEEETTTTEEEE
T ss_pred             cCCcEEEEECCCCCcccCccchh-hhcCCCCCHHHh-----------hcCCHHHHHHCCCEEEECCEEEEEECCCCEEEE
Confidence            46799999999999998777764 444422222222           245788999999999999999999999998876


Q ss_pred             C---CCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCc
Q 014997           82 N---SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLD  158 (414)
Q Consensus        82 ~---~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~  158 (414)
                      .   +++++.||+||||||++|.. |+++|.+.+++++.+++.++..+......+++++|||+|++|+|+|..|+++|.+
T Consensus        94 ~~~~~~~~~~~d~lviAtG~~p~~-p~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~  172 (452)
T 3oc4_A           94 TRKEEQQWYSYDKLILATGASQFS-TQIRGSQTEKLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGMEAIDFLVKMKKT  172 (452)
T ss_dssp             EETTEEEEEECSEEEECCCCCBCC-CCCBTTTCTTEEEGGGCC----CCHHHHTCSEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred             EecCceEEEEcCEEEECCCcccCC-CCCCCCCCCCEEEeCCHHHHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHhCCCe
Confidence            3   56689999999999999874 5567877788998887777777666666789999999999999999999999999


Q ss_pred             EEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhh
Q 014997          159 TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF  238 (414)
Q Consensus       159 Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l  238 (414)
                      |+++++.++++++.+++++.+.+.+.+++.||++++++.|++++.. ++.+ .+.+++| +++||.||+|+|++|+++++
T Consensus       173 Vtlv~~~~~~l~~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~v-~v~~~~g-~i~aD~Vv~A~G~~p~~~~l  249 (452)
T 3oc4_A          173 VHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEET-ANGI-VLETSEQ-EISCDSGIFALNLHPQLAYL  249 (452)
T ss_dssp             EEEEESSSSSSTTTCCHHHHHHHHHHHHTTTEEEEETCCEEEEEEC-SSCE-EEEESSC-EEEESEEEECSCCBCCCSSC
T ss_pred             EEEEEccCccccccCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEcc-CCeE-EEEECCC-EEEeCEEEECcCCCCChHHH
Confidence            9999999999987789999999999999999999999999999854 3444 6777777 89999999999999999887


Q ss_pred             hhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCC-CCCceee
Q 014997          239 ERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYD-YLPYFYS  316 (414)
Q Consensus       239 ~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~~~~~~~-~~p~~~~  316 (414)
                      +.. +..+ +|+|.||+++||+.|+|||+|||+..+....+...+...+..|..||+.+|+||++.. ..+. ..+..++
T Consensus       250 ~~~-~~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~~~~~  327 (452)
T 3oc4_A          250 DKK-IQRNLDQTIAVDAYLQTSVPNVFAIGDCISVMNEPVAETFYAPLVNNAVRTGLVVANNLEEKT-HRFIGSLRTMGT  327 (452)
T ss_dssp             CTT-SCBCTTSCBCCCTTCBCSSTTEEECGGGBCEEEGGGTEEECCCCHHHHHHHHHHHTTSSSSCC-CCCCCCCCCEEE
T ss_pred             Hhh-hccCCCCCEEECcCccCCCCCEEEEEeeEEeccccCCceeecchHHHHHHHHHHHHHHhcCCC-ccCCCccccEEE
Confidence            654 5553 6789999999999999999999998765555554455678899999999999999743 3343 3456667


Q ss_pred             eccCCCCCCcceeeeEeecCCCc-------EE--EE---c----CCCCcEEEEEEe--CCEEEEEEeecC-ChHHh-hHH
Q 014997          317 RVFEYEGSPRKVWWQFFGDNVGE-------TI--EI---G----NFDPKIATFWID--SGKLKGVLVESG-SPEEF-QLL  376 (414)
Q Consensus       317 ~~~~~~g~~~~~~~~~~G~~~~~-------~~--~~---~----~~~~~~~~~~~~--~~~~~g~~~~~~-~~~~~-~~~  376 (414)
                      .+|+..       +..+|..+.+       ..  ..   .    +...-|.++.++  +++|+|+++++. ++.++ ..+
T Consensus       328 ~~~~~~-------~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~~a~e~i~~~  400 (452)
T 3oc4_A          328 KVGDYY-------LASTGLTETEGLFFPQTLASIIVRQPAPPLQHGTEILGKLIYDKVTQRVLGAQLCSKNNCLEKINTL  400 (452)
T ss_dssp             EETTEE-------EEEEECCSGGGGGSSSCEEEEEEEEECTTTTCSCEEEEEEEEETTTCBEEEEEEEESSCCTHHHHHH
T ss_pred             EEcCee-------EEEecCCHHHHHHCCCceEEEEEecCCccCCCCCeEEEEEEEECCCCEEEEEEEEeCCCHHHHHHHH
Confidence            777642       5667765421       11  10   0    011236777776  489999998665 45554 455


Q ss_pred             HHHHhCCCCCChhh---hcCCCcHHH
Q 014997          377 PTLARSQPFVDKAK---LQQASSVEE  399 (414)
Q Consensus       377 ~~l~~~~~~~~~~~---~~~~~~~~~  399 (414)
                      ..+|+.+.+++.-.   +..+|+++|
T Consensus       401 ~~ai~~~~t~~~l~~~~~~~~P~~~~  426 (452)
T 3oc4_A          401 ALSIQTGQTLTDLLQKDYFYQPSLTN  426 (452)
T ss_dssp             HHHHHTTCBHHHHHTCCCCCCTTTSC
T ss_pred             HHHHHcCCCHHHHHhhHhccCCCCCC
Confidence            66788888887732   456777776

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=100.00  E-value=4.5e-43  Score=350.95  Aligned_cols=379  Identities=20%  Similarity=0.268  Sum_probs=290.5

Q ss_pred             CCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCCCEEEe
Q 014997            2 ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLIT   81 (414)
Q Consensus         2 ~~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~   81 (414)
                      +..+|+||+++++.+|.+..++. ++.+......++           ..+..+++++.|++++.+++|+.++++.+.|.+
T Consensus        24 ~g~~V~lie~~~~~~~~~~~~~~-~~~~~~~~~~~~-----------~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~   91 (447)
T 1nhp_A           24 PDAEIQWYEKGDFISFLSAGMQL-YLEGKVKDVNSV-----------RYMTGEKMESRGVNVFSNTEITAIQPKEHQVTV   91 (447)
T ss_dssp             TTSEEEEEESSSSSSBCGGGHHH-HHTTSSCCGGGS-----------BSCCHHHHHHTTCEEEETEEEEEEETTTTEEEE
T ss_pred             cCCeEEEEECCCccCcccccchh-hhcCccCCHHHh-----------hcCCHHHHHHCCCEEEECCEEEEEeCCCCEEEE
Confidence            46789999999988886544432 333321112222           345678888999999999999999999998887


Q ss_pred             CC---Cc--EEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhc--CCCeEEEECCChHHHHHHHHHHh
Q 014997           82 NS---GK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVG  154 (414)
Q Consensus        82 ~~---g~--~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~--~~~~vvVvGgG~~g~e~A~~l~~  154 (414)
                      .+   |+  ++.||+||||||++|. .|.++|.+.++++++++.+++..+.+.+.  .+++++|||+|++|+|+|..|++
T Consensus        92 ~~~~~g~~~~~~~d~lviAtG~~p~-~p~i~G~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvIiG~G~~g~e~A~~l~~  170 (447)
T 1nhp_A           92 KDLVSGEERVENYDKLIISPGAVPF-ELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAK  170 (447)
T ss_dssp             EETTTCCEEEEECSEEEECCCEEEC-CCCSTTTTSBSEECCCHHHHHHHHHHHHTCTTCCEEEEECCSHHHHHHHHHHHH
T ss_pred             EecCCCceEEEeCCEEEEcCCCCcC-CCCCCCCCCCCeEEECCHHHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHH
Confidence            54   65  4899999999999987 45567776678988888888888777666  78999999999999999999999


Q ss_pred             CCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997          155 WKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       155 ~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (414)
                      +|.+|+++++.++++++.+++++.+.+.+.+++.||++++++.|++++.+  +.+..+.+ +++++++|.||+|+|.+|+
T Consensus       171 ~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~--~~v~~v~~-~~~~i~~d~vi~a~G~~p~  247 (447)
T 1nhp_A          171 AGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGD--GRVQKVVT-DKNAYDADLVVVAVGVRPN  247 (447)
T ss_dssp             TTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEECS--SBCCEEEE-SSCEEECSEEEECSCEEES
T ss_pred             CCCeEEEEecCcccccccCCHHHHHHHHHHHHhCCCEEEcCCEEEEEEcc--CcEEEEEE-CCCEEECCEEEECcCCCCC
Confidence            99999999999999886789999999999999999999999999999853  33334555 4578999999999999999


Q ss_pred             ChhhhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCC-CCC
Q 014997          235 VSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYD-YLP  312 (414)
Q Consensus       235 ~~~l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~~~~~~~-~~p  312 (414)
                      .+++++. ++.+ +|+|.||+++||+.|+|||+|||+..+....+...+.+++..|..||+.+|+||++.. .++. ..+
T Consensus       248 ~~~~~~~-~~~~~~G~i~Vd~~~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~-~~~~~~~~  325 (447)
T 1nhp_A          248 TAWLKGT-LELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPV-KPFPGVQG  325 (447)
T ss_dssp             CGGGTTT-SCBCTTSCBCCCTTCBCSSTTEEECGGGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSSSCC-CCCCCBCC
T ss_pred             hHHHHhh-hhhcCCCcEEECccccCCCCCEEEeeeEEEeeccCCCCceechhHHHHHHHHHHHHHhhcCCC-CCCCCccc
Confidence            9988777 7664 5779999999999999999999998765544554456689999999999999999743 3343 467


Q ss_pred             ceeeeccCCCCCCcceeeeEeecCCCc-------EE---E--EcCC------CCcEEEEEEe--CCEEEEEEeecCC-hH
Q 014997          313 YFYSRVFEYEGSPRKVWWQFFGDNVGE-------TI---E--IGNF------DPKIATFWID--SGKLKGVLVESGS-PE  371 (414)
Q Consensus       313 ~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~~---~--~~~~------~~~~~~~~~~--~~~~~g~~~~~~~-~~  371 (414)
                      ++|+.+++..       ++.+|....+       ..   .  ....      ..-|.+++++  +++|+|++++... +.
T Consensus       326 ~~~~~~~~~~-------~~~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~~a~  398 (447)
T 1nhp_A          326 SSGLAVFDYK-------FASTGINEVMAQKLGKETKAVTVVEDYLMDFNPDKQKAWFKLVYDPETTQILGAQLMSKADLT  398 (447)
T ss_dssp             CEEEEETTEE-------EEEEECCHHHHHHHTCCCEEEEEEEESSCTTCTTCCEEEEEEEECTTTCBEEEEEEEESSCCT
T ss_pred             cEEEEECCee-------eEEecCCHHHHHHcCCceEEEEEEcCCccccCCCCceEEEEEEEECCCCEEEEEEEEcCccHH
Confidence            8888877643       5666654321       10   1  1110      1125666665  5899999986655 44


Q ss_pred             H-hhHHHHHHhCCCCCChhh---hcCCCcHHHHHHHHh
Q 014997          372 E-FQLLPTLARSQPFVDKAK---LQQASSVEEALEIAR  405 (414)
Q Consensus       372 ~-~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~  405 (414)
                      + +..+..+|+.+.++++-.   +..||+++|++..+.
T Consensus       399 e~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~~e~~~~~~  436 (447)
T 1nhp_A          399 ANINAISLAIQAKMTIEDLAYADFFFQPAFDKPWNIIN  436 (447)
T ss_dssp             THHHHHHHHHHTTCBHHHHHTCCCCCCTTTCCSSCHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHhhcceecCCCCCCcccHHH
Confidence            4 445667889999888833   467888888665543

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=100.00  E-value=1.5e-41  Score=333.45  Aligned_cols=341  Identities=20%  Similarity=0.266  Sum_probs=268.6

Q ss_pred             CCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCC-CHhHHHHcCCeEEcCCcEEEEeCCCCEEEe
Q 014997            3 DGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQ-TPEWYKEKGIEMIYQDPVTSIDIEKQTLIT   81 (414)
Q Consensus         3 ~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~-~~~~~~~~~i~~~~~~~V~~id~~~~~V~~   81 (414)
                      +.+|++|++++..+|.+|++++.+ .. .....++           ..+ ..+++++.+++++.+++|+.++++.++|.+
T Consensus        29 ~~~V~lie~~~g~~~~~~~l~~~~-~~-~~~~~~~-----------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~   95 (384)
T 2v3a_A           29 ETPLLMITADDGRSYSKPMLSTGF-SK-NKDADGL-----------AMAEPGAMAEQLNARILTHTRVTGIDPGHQRIWI   95 (384)
T ss_dssp             SSCEEEECSSCCCEECGGGGGGTT-TT-TCCHHHH-----------EEECHHHHHHHTTCEEECSCCCCEEEGGGTEEEE
T ss_pred             CCCEEEEECCCCCccCcccccHHH-hC-CCCHHHh-----------hccCHHHHHHhCCcEEEeCCEEEEEECCCCEEEE
Confidence            357999999999999999998733 22 1111111           112 245567899999998899999998899998


Q ss_pred             CCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEE
Q 014997           82 NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTI  161 (414)
Q Consensus        82 ~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtl  161 (414)
                      +++ ++.||+||||||++|. .|+++|.+.+++++.+++.++..+...+..+++++|||+|++|+|+|..|+++|.+|++
T Consensus        96 ~~~-~~~~d~lviAtG~~p~-~p~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtl  173 (384)
T 2v3a_A           96 GEE-EVRYRDLVLAWGAEPI-RVPVEGDAQDALYPINDLEDYARFRQAAAGKRRVLLLGAGLIGCEFANDLSSGGYQLDV  173 (384)
T ss_dssp             TTE-EEECSEEEECCCEEEC-CCCCBSTTTTCEEECSSHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCc-EEECCEEEEeCCCCcC-CCCCCCcCcCCEEEECCHHHHHHHHHhhccCCeEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence            754 6999999999999987 45567766678999999999888887777899999999999999999999999999999


Q ss_pred             EeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhc
Q 014997          162 IFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERV  241 (414)
Q Consensus       162 v~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~  241 (414)
                      +++.++++++.+++++.+.+.+.+++.||++++++.|++++.+++  ...+.+.+|++++||.||+|+|.+|+.++++++
T Consensus       174 v~~~~~~~~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~--~~~v~~~~g~~i~~d~vv~a~G~~p~~~l~~~~  251 (384)
T 2v3a_A          174 VAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGE--GLEAHLSDGEVIPCDLVVSAVGLRPRTELAFAA  251 (384)
T ss_dssp             EESSSSSSTTTSCHHHHHHHHHHHHTTTCEEEESCCEEEEEEETT--EEEEEETTSCEEEESEEEECSCEEECCHHHHHT
T ss_pred             EecCcchhhcccCHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCC--EEEEEECCCCEEECCEEEECcCCCcCHHHHHHC
Confidence            999999998767999999999999999999999999999986433  246788899999999999999999999899999


Q ss_pred             CCcccCCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCC--CCCceeeecc
Q 014997          242 GLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYD--YLPYFYSRVF  319 (414)
Q Consensus       242 gl~~~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~~~~~~~--~~p~~~~~~~  319 (414)
                      |++.++| |.||+++||+.|+|||+|||+......      ..+|..|..||+.+|+||++.. .+++  .+||++   |
T Consensus       252 g~~~~~g-i~vd~~~~t~~~~IyA~GD~~~~~~~~------~~~~~~a~~~g~~~a~~i~g~~-~~~~~~~~p~~~---~  320 (384)
T 2v3a_A          252 GLAVNRG-IVVDRSLRTSHANIYALGDCAEVDGLN------LLYVMPLMACARALAQTLAGNP-SQVAYGPMPVTV---K  320 (384)
T ss_dssp             TCCBSSS-EEECTTCBCSSTTEEECGGGEEETTBC------CCSHHHHHHHHHHHHHHHTTCC-CCCCCCCCCEEE---C
T ss_pred             CCCCCCC-EEECCCCCCCCCCEEEeeeeeeECCCC------cchHHHHHHHHHHHHHHhcCCC-ccCCCCCcceEE---E
Confidence            9988755 999999999999999999999754322      2368889999999999999743 4444  466532   2


Q ss_pred             CCCCCCcceeeeEeecCCC---cEEEEcCCCCcEEEEEEe-CCEEEEEEeecCChHHhhHHH
Q 014997          320 EYEGSPRKVWWQFFGDNVG---ETIEIGNFDPKIATFWID-SGKLKGVLVESGSPEEFQLLP  377 (414)
Q Consensus       320 ~~~g~~~~~~~~~~G~~~~---~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~  377 (414)
                      .. +    ..++..|....   .....++. ..|.+++++ +++|+|++++...+.++..+.
T Consensus       321 ~~-~----~~~~~~g~~~~~~~~~~~~~~~-~g~~~~~~~~~~~i~G~~~~g~~a~e~~~~~  376 (384)
T 2v3a_A          321 TP-A----CPLVVSPPPRGMDGQWLVEGSG-TDLKVLCRDTAGRVIGYALTGAAVNEKLALN  376 (384)
T ss_dssp             CT-T----SCEEEECCCTTCCCEEEEEEET-TEEEEEEECTTSCEEEEEEEGGGGGGHHHHH
T ss_pred             EC-C----eeEEEecCCCCCCceEEEEecC-CcEEEEEEccCCEEEEEEEECcchHHHHHHH
Confidence            11 1    12566775432   23333432 347777775 799999998666666654443

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=100.00  E-value=4.3e-42  Score=344.07  Aligned_cols=373  Identities=20%  Similarity=0.261  Sum_probs=279.4

Q ss_pred             CCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH-HHcCCeEEcCCcEEEEeCCCCEEE
Q 014997            2 ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY-KEKGIEMIYQDPVTSIDIEKQTLI   80 (414)
Q Consensus         2 ~~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~~~-~~~~i~~~~~~~V~~id~~~~~V~   80 (414)
                      ++.+|+||+++++.+|.+..++. ++.+. ....++           ..+..+++ ++.+++++++++|+.++++.+.|.
T Consensus        27 ~~~~V~vie~~~~~~~~~~~~p~-~~~~~-~~~~~~-----------~~~~~~~~~~~~gi~v~~~~~v~~i~~~~~~v~   93 (449)
T 3kd9_A           27 PEWDVKVFEATEWVSHAPCGIPY-VVEGL-STPDKL-----------MYYPPEVFIKKRGIDLHLNAEVIEVDTGYVRVR   93 (449)
T ss_dssp             TTSEEEEECSSSCCC-------------------------------------CTHHHHTTCEEETTCEEEEECSSEEEEE
T ss_pred             cCCCEEEEECCCccccCCcCCcc-ccCCC-CCHHHh-----------hhcCHHHHHHhcCcEEEecCEEEEEecCCCEEE
Confidence            35689999999988887656654 33332 222222           23344555 689999999999999999988998


Q ss_pred             eCCC-cEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhc--CCCeEEEECCChHHHHHHHHHHhCCC
Q 014997           81 TNSG-KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKL  157 (414)
Q Consensus        81 ~~~g-~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~--~~~~vvVvGgG~~g~e~A~~l~~~g~  157 (414)
                      ++++ .++.||+||||||++|+ .|.++|.+.+++++.++..++..+.+.+.  .+++++|||+|++|+|+|..|+++|.
T Consensus        94 ~~~g~~~~~~d~lviAtG~~p~-~p~i~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~  172 (449)
T 3kd9_A           94 ENGGEKSYEWDYLVFANGASPQ-VPAIEGVNLKGVFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGK  172 (449)
T ss_dssp             CSSSEEEEECSEEEECCCEEEC-CCSCBTTTSTTEECSCSTHHHHHHHHHHSSSCCCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             ECCceEEEEcCEEEECCCCCCC-CCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHhCCC
Confidence            8888 48999999999999986 45677877788998888888888777666  78999999999999999999999999


Q ss_pred             cEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChh
Q 014997          158 DTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP  237 (414)
Q Consensus       158 ~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~  237 (414)
                      +|+++++.++++++.+++++.+.+.+.+++. |++++++.+.+++.++  .+..+ +.+|++++||.||+|+|++|++++
T Consensus       173 ~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~-v~i~~~~~v~~i~~~~--~v~~v-~~~g~~i~~D~Vv~a~G~~p~~~l  248 (449)
T 3kd9_A          173 NVTMIVRGERVLRRSFDKEVTDILEEKLKKH-VNLRLQEITMKIEGEE--RVEKV-VTDAGEYKAELVILATGIKPNIEL  248 (449)
T ss_dssp             EEEEEESSSSTTTTTSCHHHHHHHHHHHTTT-SEEEESCCEEEEECSS--SCCEE-EETTEEEECSEEEECSCEEECCHH
T ss_pred             eEEEEEcCCccchhhcCHHHHHHHHHHHHhC-cEEEeCCeEEEEeccC--cEEEE-EeCCCEEECCEEEEeeCCccCHHH
Confidence            9999999999998768999999999999999 9999999999998542  33233 456778999999999999999999


Q ss_pred             hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCC-CCCcee
Q 014997          238 FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYD-YLPYFY  315 (414)
Q Consensus       238 l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~~~~~~~-~~p~~~  315 (414)
                      ++++|++.+ +|+|.||+++||+.|+|||+|||+..+....|...+...+..|..||+.+|+||++... .+. ..|++|
T Consensus       249 ~~~~gl~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~l~~~A~~~g~~aa~~i~g~~~-~~~~~~~~~~  327 (449)
T 3kd9_A          249 AKQLGVRIGETGAIWTNEKMQTSVENVYAAGDVAETRHVITGRRVWVPLAPAGNKMGYVAGSNIAGKEL-HFPGVLGTAV  327 (449)
T ss_dssp             HHHTTCCBCTTSSBCCCTTCBCSSTTEEECSTTBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHTTCCC-CCCCBCCCEE
T ss_pred             HHhCCccCCCCCCEEECCCCccCCCCEEEeeeeeeeccccCCceEEeccHHHHHHHHHHHHHHhcCCCc-cCCCcccceE
Confidence            999999875 57799999999999999999999987765556555566888999999999999997543 443 467788


Q ss_pred             eeccCCCCCCcceeeeEeecCCCc-------EEE-----EcCC------CCcEEEEEEeC--CEEEEEEeecCChHHhhH
Q 014997          316 SRVFEYEGSPRKVWWQFFGDNVGE-------TIE-----IGNF------DPKIATFWIDS--GKLKGVLVESGSPEEFQL  375 (414)
Q Consensus       316 ~~~~~~~g~~~~~~~~~~G~~~~~-------~~~-----~~~~------~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~  375 (414)
                      +.+++..       ++.+|..+.+       ...     .+..      ..-|.++.++.  ++|+|+++++..+.++..
T Consensus       328 ~~~~~~~-------~~~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~e~i~  400 (449)
T 3kd9_A          328 TKFMDVE-------IGKTGLTEMEALKEGYDVRTAFIKASTRPHYYPGGREIWLKGVVDNETNRLLGVQVVGSDILPRID  400 (449)
T ss_dssp             EEETTEE-------EEEEECCHHHHHHTTCCEEEEEEEEESSCTTSTTCCEEEEEEEEETTTCBEEEEEEEESSCHHHHH
T ss_pred             EEEcCcE-------EEEecCCHHHHHHCCCceEEEEEecCCccccCCCCceEEEEEEEECCCCEEEEEEEEChHHHHHHH
Confidence            8777653       6677755321       110     1110      12367777763  899999987777766654


Q ss_pred             -HHHHHhCCCCCChhh---hcCCCcHHHH
Q 014997          376 -LPTLARSQPFVDKAK---LQQASSVEEA  400 (414)
Q Consensus       376 -~~~l~~~~~~~~~~~---~~~~~~~~~~  400 (414)
                       +..+|+.+.+++.-.   +.-+|+++++
T Consensus       401 ~~~~ai~~~~t~~~l~~~~~~~~p~~~~~  429 (449)
T 3kd9_A          401 TAAAMLMAGFTTKDAFFTDLAYAPPFAPV  429 (449)
T ss_dssp             HHHHHHHTTCBHHHHHTCCCCCBTTTBCS
T ss_pred             HHHHHHHcCCcHHHHhhcccccCCCCCCc
Confidence             455678888777622   3445555543

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=100.00  E-value=9.4e-42  Score=351.26  Aligned_cols=364  Identities=19%  Similarity=0.338  Sum_probs=285.2

Q ss_pred             CCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHH-cCCeEEcCCcEEEEeCCCCEEE
Q 014997            2 ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE-KGIEMIYQDPVTSIDIEKQTLI   80 (414)
Q Consensus         2 ~~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~-~~i~~~~~~~V~~id~~~~~V~   80 (414)
                      +..+||||+++++++|.++.++. ++.+.......+           ..+..+++.+ .+++++++++|+.+|++.+.+.
T Consensus        25 ~~~~V~lie~~~~~~~~~~~l~~-~~~~~~~~~~~~-----------~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~   92 (565)
T 3ntd_A           25 ETAEIIMFERGEYVSFANCGLPY-HISGEIAQRSAL-----------VLQTPESFKARFNVEVRVKHEVVAIDRAAKLVT   92 (565)
T ss_dssp             SSSEEEEECSSSCSSBCGGGHHH-HHTSSSCCGGGG-----------BCCCHHHHHHHHCCEEETTEEEEEEETTTTEEE
T ss_pred             cCCCEEEEECCCCccccccCchH-HhcCCcCChHHh-----------hccCHHHHHHhcCcEEEECCEEEEEECCCCEEE
Confidence            36789999999999999888775 444422211111           2455666655 8999999999999999999887


Q ss_pred             eCC---Cc--EEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhh--cCCCeEEEECCChHHHHHHHHHH
Q 014997           81 TNS---GK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL--EKAKKVVVVGGGYIGMEVAAAAV  153 (414)
Q Consensus        81 ~~~---g~--~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~--~~~~~vvVvGgG~~g~e~A~~l~  153 (414)
                      +.+   |+  ++.||+||||||++|+. |.++|.+.+++++.+++.++..+...+  ..+++++|||+|++|+|+|..|+
T Consensus        93 ~~~~~~g~~~~~~~d~lviAtG~~p~~-p~ipG~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~  171 (565)
T 3ntd_A           93 VRRLLDGSEYQESYDTLLLSPGAAPIV-PPIPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLH  171 (565)
T ss_dssp             EEETTTCCEEEEECSEEEECCCEEECC-CCCTTCCSTTEECCSSHHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHHH
T ss_pred             EEecCCCCeEEEECCEEEECCCCCCCC-CCCCCCCCCCEEEeCCHHHHHHHHHHHhhCCCCEEEEECCCHHHHHHHHHHH
Confidence            753   54  79999999999999864 556887778899999988888776543  35789999999999999999999


Q ss_pred             hCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEec------------------CCCcEEEEEeC
Q 014997          154 GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG------------------SDGRVAAVKLE  215 (414)
Q Consensus       154 ~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~------------------~~~~~~~v~~~  215 (414)
                      ++|.+|+++++.+++++ .+++++.+.+.+.+++.||++++++.+++++.+                  .++.+ .+.+.
T Consensus       172 ~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~  249 (565)
T 3ntd_A          172 HLGIKTTLLELADQVMT-PVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHL-SLTLS  249 (565)
T ss_dssp             HTTCEEEEEESSSSSCT-TSCHHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEE-EEEET
T ss_pred             hcCCcEEEEEcCCccch-hcCHHHHHHHHHHHHHCCCEEEeCCeEEEEeccccccccccccccccccccCCCcE-EEEEc
Confidence            99999999999999998 689999999999999999999999999999862                  23433 56778


Q ss_pred             CCcEEecCEEEEccCCcCCChhhhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHH
Q 014997          216 DGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQ  294 (414)
Q Consensus       216 ~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~  294 (414)
                      +|++++||.||+|+|++|++++++++|+..+ +|+|.||+++||+.|+|||+|||+..+....|.....+++..|..||+
T Consensus       250 ~g~~i~~D~vi~a~G~~p~~~l~~~~g~~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~  329 (565)
T 3ntd_A          250 NGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQTSDPAIYAVGDAVEEQDFVTGQACLVPLAGPANRQGR  329 (565)
T ss_dssp             TSCEEEESEEEECSCEEECCHHHHHHTCCBCTTSSBCCCTTCBCSSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHH
T ss_pred             CCCEEEcCEEEECcCCccchHHHHhCCcccCCCCCEEECCCcccCCCCEEEeeeeEeeccccCCceeecccHHHHHHHHH
Confidence            8999999999999999999999888899875 688999999999999999999999877766666656678999999999


Q ss_pred             HHHHHHhcCCCCCCCCC-CceeeeccCCCCCCcceeeeEeecCCCc---------EEE---EcC--C----CCcEEEEEE
Q 014997          295 HCIKALLSAQTHTYDYL-PYFYSRVFEYEGSPRKVWWQFFGDNVGE---------TIE---IGN--F----DPKIATFWI  355 (414)
Q Consensus       295 ~aa~~i~~~~~~~~~~~-p~~~~~~~~~~g~~~~~~~~~~G~~~~~---------~~~---~~~--~----~~~~~~~~~  355 (414)
                      .+|+||++.. ..|... |+.|+.+|+..       ++.+|..+.+         ...   .+.  .    ..-+.++.+
T Consensus       330 ~aa~~i~g~~-~~~~~~~~~~~~~~~~~~-------~~~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~k~v~  401 (565)
T 3ntd_A          330 MAADNMFGRE-ERYQGTQGTAICKVFDLA-------VGATGKNEKQLKQAGIAFEKVYVHTASHASYYPGAEVVSFKLLF  401 (565)
T ss_dssp             HHHHHHTTCC-CCCCCBCCCEEEEETTEE-------EEEEECCHHHHHHTTCCCEEEEEEEESSCTTSTTCCEEEEEEEE
T ss_pred             HHHHHhcCCC-ccCCCcccceEEEEcCcE-------EEEecCCHHHHHHcCCCeEEEEEecCcccCcCCCCceEEEEEEE
Confidence            9999999754 446554 45556677542       5667755321         111   111  1    112667777


Q ss_pred             e--CCEEEEEEeecCCh-HHh-hHHHHHHhCCCCCCh
Q 014997          356 D--SGKLKGVLVESGSP-EEF-QLLPTLARSQPFVDK  388 (414)
Q Consensus       356 ~--~~~~~g~~~~~~~~-~~~-~~~~~l~~~~~~~~~  388 (414)
                      +  +++|+|+++++..+ .++ ..+..+|+.+.+++.
T Consensus       402 ~~~~~~ilG~~~~g~~a~~e~i~~~~~ai~~~~~~~~  438 (565)
T 3ntd_A          402 DPVKGTIFGAQAVGKDGIDKRIDVMAVAQRAGMTVEQ  438 (565)
T ss_dssp             CTTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBHHH
T ss_pred             ECCCCEEEEEEEECCccHHHHHHHHHHHHHcCCCHHH
Confidence            4  69999999877776 554 455556788887766

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=100.00  E-value=6.4e-42  Score=345.51  Aligned_cols=378  Identities=19%  Similarity=0.300  Sum_probs=290.9

Q ss_pred             CCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHH-cCCeEEcCCcEEEEeCCCCEEE
Q 014997            2 ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE-KGIEMIYQDPVTSIDIEKQTLI   80 (414)
Q Consensus         2 ~~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~-~~i~~~~~~~V~~id~~~~~V~   80 (414)
                      +..+|+||++++..+|.++.++. ++.+......++           ..+..+++.+ .+++++.+++|+.++++.+.|.
T Consensus        60 ~g~~V~lie~~~~~~~~~~~~~~-~~~~~~~~~~~l-----------~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~  127 (480)
T 3cgb_A           60 ENANVVTLEKGEIYSYAQCGLPY-VISGAIASTEKL-----------IARNVKTFRDKYGIDAKVRHEVTKVDTEKKIVY  127 (480)
T ss_dssp             TTCEEEEECSSSCCSBCGGGHHH-HHTTSSSCGGGG-----------BSSCHHHHHHTTCCEEESSEEEEEEETTTTEEE
T ss_pred             cCCcEEEEECCCCCCCCCCCcch-hhcCCcCCHHHh-----------hhcCHHHHHhhcCCEEEeCCEEEEEECCCCEEE
Confidence            35689999999998898776664 443321112222           2345677754 5999999999999999988887


Q ss_pred             eCC---Cc--EEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhc--CCCeEEEECCChHHHHHHHHHH
Q 014997           81 TNS---GK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAV  153 (414)
Q Consensus        81 ~~~---g~--~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~--~~~~vvVvGgG~~g~e~A~~l~  153 (414)
                      +.+   |+  ++.||+||||||++|+ .|.++|.+.++++++++.+++..+.+.+.  .+++++|||+|++|+|+|..|+
T Consensus       128 v~~~~~g~~~~~~~d~lviAtG~~p~-~p~i~G~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~  206 (480)
T 3cgb_A          128 AEHTKTKDVFEFSYDRLLIATGVRPV-MPEWEGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEMAETFV  206 (480)
T ss_dssp             EEETTTCCEEEEECSEEEECCCEEEC-CCCCBTTTSBTEECCSSHHHHHHHHHHHHSSCCCEEEEECCHHHHHHHHHHHH
T ss_pred             EEEcCCCceEEEEcCEEEECCCCccc-CCCCCCccCCCEEEeCCHHHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHH
Confidence            753   66  7999999999999986 45567766678998889998888776665  7899999999999999999999


Q ss_pred             hCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcC
Q 014997          154 GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  233 (414)
Q Consensus       154 ~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p  233 (414)
                      ++|.+|+++++.+++++ .+++++.+.+.+.+++.||++++++.|+++..+  +.+..+.+++ .+++||.||+|+|++|
T Consensus       207 ~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~v~~v~~~~-~~i~~D~vi~a~G~~p  282 (480)
T 3cgb_A          207 ELGKKVRMIERNDHIGT-IYDGDMAEYIYKEADKHHIEILTNENVKAFKGN--ERVEAVETDK-GTYKADLVLVSVGVKP  282 (480)
T ss_dssp             HTTCEEEEECCGGGTTS-SSCHHHHHHHHHHHHHTTCEEECSCCEEEEEES--SBEEEEEETT-EEEECSEEEECSCEEE
T ss_pred             hcCCeEEEEEeCCchhh-cCCHHHHHHHHHHHHHcCcEEEcCCEEEEEEcC--CcEEEEEECC-CEEEcCEEEECcCCCc
Confidence            99999999999998887 589999999999999999999999999999853  4454566654 5799999999999999


Q ss_pred             CChhhhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCC-CC
Q 014997          234 TVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYD-YL  311 (414)
Q Consensus       234 ~~~~l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~~~~~~~-~~  311 (414)
                      +.++++++|++.+ +|+|.||+++||+.|+|||+|||+..+....|...+..++..|..||+.+|+||++. ..++. ..
T Consensus       283 ~~~~l~~~g~~~~~~G~I~Vd~~~~ts~p~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~-~~~~~~~~  361 (480)
T 3cgb_A          283 NTDFLEGTNIRTNHKGAIEVNAYMQTNVQDVYAAGDCATHYHVIKEIHDHIPIGTTANKQGRLAGLNMLDK-RRAFKGTL  361 (480)
T ss_dssp             SCGGGTTSCCCBCTTSCBCCCTTSBCSSTTEEECGGGBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHTTC-CCCCCCBC
T ss_pred             ChHHHHhCCcccCCCCCEEECCCccCCCCCEEEeeeEEEecCCCCCcceecchHHHHHHHHHHHHHHhcCC-CccCCCcc
Confidence            9999999998865 578999999999999999999999876554455444568899999999999999974 33443 34


Q ss_pred             CceeeeccCCCCCCcceeeeEeecCCC-------cE---EEEcC--C----C--CcEEEEEEe--CCEEEEEEeecCC-h
Q 014997          312 PYFYSRVFEYEGSPRKVWWQFFGDNVG-------ET---IEIGN--F----D--PKIATFWID--SGKLKGVLVESGS-P  370 (414)
Q Consensus       312 p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~---~~~~~--~----~--~~~~~~~~~--~~~~~g~~~~~~~-~  370 (414)
                      +++|+.+++..       ++.+|....       +.   .....  .    .  .-|.+++++  +++|+|++++... +
T Consensus       362 ~~~~~~~~~~~-------~~~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~vg~~~a  434 (480)
T 3cgb_A          362 GTGIIKFMNLT-------LARTGLNEKEAKGLHIPYKTVKVDSTNMAGYYPNAKPLYLKLLYRSDTKQLLGGQVIGEEGV  434 (480)
T ss_dssp             CCEEEEETTEE-------EEEEECCHHHHHHTTCCEEEEEEEEESSCTTSTTCCEEEEEEEEETTTCBEEEEEEEESSSH
T ss_pred             ceeEEEECCcE-------EEEeCCCHHHHHHcCCceEEEEEecCCcccccCCCceEEEEEEEECCCCEEEEEEEECCccH
Confidence            56777777643       667775432       11   11111  0    1  125677664  6999999986655 5


Q ss_pred             HH-hhHHHHHHhCCCCCCh-hh--hcCCCcHHHHHHHH
Q 014997          371 EE-FQLLPTLARSQPFVDK-AK--LQQASSVEEALEIA  404 (414)
Q Consensus       371 ~~-~~~~~~l~~~~~~~~~-~~--~~~~~~~~~~~~~~  404 (414)
                      .+ +..+..+|+.+.+++. ..  +..+|+++|++..+
T Consensus       435 ~e~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~~e~~~~~  472 (480)
T 3cgb_A          435 DKRIDVIAMALFNKMSIHDLEDVDLSYAPPYNSVWDPI  472 (480)
T ss_dssp             HHHHHHHHHHHHTTCBGGGGGGCCCCCCTTTCCSSCHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHhhcccccCCCCCCchhHH
Confidence            44 4556778899998887 33  35788888865544

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=100.00  E-value=2.2e-38  Score=327.48  Aligned_cols=362  Identities=21%  Similarity=0.316  Sum_probs=279.9

Q ss_pred             CCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHh-HHHHcCCeEEcCCcEEEEeCCCCEEE
Q 014997            2 ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE-WYKEKGIEMIYQDPVTSIDIEKQTLI   80 (414)
Q Consensus         2 ~~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~-~~~~~~i~~~~~~~V~~id~~~~~V~   80 (414)
                      +..+||||+++++++|.++.++. ++.+.......+           +.+..+ +.++.+++++++++|+.++++.+.+.
T Consensus        60 ~g~~V~vie~~~~~~~~~~~lp~-~~~g~~~~~~~~-----------~~~~~~~~~~~~gi~v~~~~~V~~id~~~~~v~  127 (588)
T 3ics_A           60 EEDEIIMVERGEYISFANCGLPY-YIGGVITERQKL-----------LVQTVERMSKRFNLDIRVLSEVVKINKEEKTIT  127 (588)
T ss_dssp             SSSEEEEECSSSCSSBCGGGHHH-HHTTSSCCGGGG-----------BSSCHHHHHHHTTCEEECSEEEEEEETTTTEEE
T ss_pred             cCCCEEEEECCCCccccCCCCch-hhcCcCCChHHh-----------hccCHHHHHHhcCcEEEECCEEEEEECCCCEEE
Confidence            46789999999999999887775 444321111111           123344 45688999999999999999999887


Q ss_pred             eC---CCc--EEecCeEEEccCCCCCCCCCCCCC-CCCCEEEecCHHHHHHHHHhh--cCCCeEEEECCChHHHHHHHHH
Q 014997           81 TN---SGK--LLKYGSLIVATGCTASRFPEKIGG-YLPGVHYIRDVADADALISSL--EKAKKVVVVGGGYIGMEVAAAA  152 (414)
Q Consensus        81 ~~---~g~--~~~yd~LviAtG~~~~~~~~~~g~-~~~gv~~~~~~~~~~~~~~~~--~~~~~vvVvGgG~~g~e~A~~l  152 (414)
                      +.   +|+  .+.||+||||||++|. .|.++|. +.+++++.+++.++..+...+  ..+++++|||+|++|+|+|..|
T Consensus       128 v~~~~~g~~~~~~~d~lviAtG~~p~-~p~i~G~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l  206 (588)
T 3ics_A          128 IKNVTTNETYNEAYDVLILSPGAKPI-VPSIPGIEEAKALFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMVENL  206 (588)
T ss_dssp             EEETTTCCEEEEECSEEEECCCEEEC-CCCCTTTTTCTTEEECSSHHHHHHHHHHHHHHCCSEEEEECCSHHHHHHHHHH
T ss_pred             EeecCCCCEEEEeCCEEEECCCCCCC-CCCCCCcccCCCeEEeCCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHH
Confidence            74   465  7899999999999986 4556776 678899999998888776654  3689999999999999999999


Q ss_pred             HhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCc
Q 014997          153 VGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  232 (414)
Q Consensus       153 ~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~  232 (414)
                      +++|.+|+++++.+++++. +++++.+.+.+.+++.||++++++.|++++.+.+    .+.+.+|++++||.||+|+|++
T Consensus       207 ~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~----~v~~~~g~~i~~D~Vi~a~G~~  281 (588)
T 3ics_A          207 RERGIEVTLVEMANQVMPP-IDYEMAAYVHEHMKNHDVELVFEDGVDALEENGA----VVRLKSGSVIQTDMLILAIGVQ  281 (588)
T ss_dssp             HHTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHHTTCEEECSCCEEEEEGGGT----EEEETTSCEEECSEEEECSCEE
T ss_pred             HhCCCeEEEEecCCccccc-CCHHHHHHHHHHHHHcCCEEEECCeEEEEecCCC----EEEECCCCEEEcCEEEEccCCC
Confidence            9999999999999999985 8999999999999999999999999999985422    5778899999999999999999


Q ss_pred             CCChhhhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCC-CC
Q 014997          233 PTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTY-DY  310 (414)
Q Consensus       233 p~~~~l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~~~~~~-~~  310 (414)
                      |++++++++|+..+ +|+|.||++++|+.|+|||+|||+..+....|.......+..|..||+.+|+||++.....+ ..
T Consensus       282 p~~~~l~~~g~~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~  361 (588)
T 3ics_A          282 PESSLAKGAGLALGVRGTIKVNEKFQTSDPHIYAIGDAIEVKDFVTETETMIPLAWPANRQGRMLADIIHGHTDSLYKGT  361 (588)
T ss_dssp             ECCHHHHHTTCCBCGGGCBCCCTTSBCSSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHTTCCSSCCCCB
T ss_pred             CChHHHHhcCceEcCCCCEEECCccccCCCCEEEeeeeeecccccCCcccccccHHHHHHHHHHHHHHhcCCCccccCCc
Confidence            99999999999874 68899999999999999999999987765556555566888999999999999997222334 34


Q ss_pred             CCceeeeccCCCCCCcceeeeEeecCCCc---------EEE---EcCC------CCcEEEEEEe--CCEEEEEEeecCC-
Q 014997          311 LPYFYSRVFEYEGSPRKVWWQFFGDNVGE---------TIE---IGNF------DPKIATFWID--SGKLKGVLVESGS-  369 (414)
Q Consensus       311 ~p~~~~~~~~~~g~~~~~~~~~~G~~~~~---------~~~---~~~~------~~~~~~~~~~--~~~~~g~~~~~~~-  369 (414)
                      +|..+...++..       +..+|..+.+         ...   ....      ..-+.++.++  +++|+|+++++.. 
T Consensus       362 ~~~~~~~~~~~~-------~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~~~~ilG~~~~g~~~  434 (588)
T 3ics_A          362 LGTSVAKVFDLT-------VATTGLNEKILKRLNIPYEVVHVQANSHAGYYPNATPVLIKLIFNKDSGKIYGAQTLGRDG  434 (588)
T ss_dssp             CCCEEEEETTEE-------EEEEECCHHHHHHTTCCCEEEEEEEESSCTTSTTCCEEEEEEEECTTTCBEEEEEEEESSS
T ss_pred             ccceEEEECCeE-------EEEecCCHHHHHHcCCCeEEEEEecCCccccCCCCceEEEEEEEECCCCeEEEEEEEcCCc
Confidence            566554444432       4556654311         110   1110      1126677774  6999999986543 


Q ss_pred             hHHhh-HHHHHHhCCCCCCh
Q 014997          370 PEEFQ-LLPTLARSQPFVDK  388 (414)
Q Consensus       370 ~~~~~-~~~~l~~~~~~~~~  388 (414)
                      +.++. .+..+|+.+.+++.
T Consensus       435 ~~e~i~~~~~ai~~~~t~~~  454 (588)
T 3ics_A          435 VDKRMDVIATAIKANLTVLD  454 (588)
T ss_dssp             HHHHHHHHHHHHHTTCBTTT
T ss_pred             HHHHHHHHHHHHHcCCCHHH
Confidence            55544 45567788888887

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=100.00  E-value=5.2e-37  Score=309.23  Aligned_cols=328  Identities=19%  Similarity=0.269  Sum_probs=248.1

Q ss_pred             HhHHHHcCCeEEcCCcEEEEeCCCCEEEeCC-C-cEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhh
Q 014997           53 PEWYKEKGIEMIYQDPVTSIDIEKQTLITNS-G-KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL  130 (414)
Q Consensus        53 ~~~~~~~~i~~~~~~~V~~id~~~~~V~~~~-g-~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~  130 (414)
                      .+++++.+|+++.+ ++..+++....|.+.+ | +++.||+||+|||++|.. |+++|.+..+++   +..+..   ...
T Consensus       104 ~~~~~~~gv~~~~g-~~~~~~~~~~~v~~~~gg~~~~~~d~lViAtGs~p~~-p~i~g~~~~~v~---t~~~~~---~~~  175 (474)
T 1zmd_A          104 AHLFKQNKVVHVNG-YGKITGKNQVTATKADGGTQVIDTKNILIATGSEVTP-FPGITIDEDTIV---SSTGAL---SLK  175 (474)
T ss_dssp             HHHHHHTTCEEEES-EEEEEETTEEEEECTTSCEEEEEEEEEEECCCEEECC-CTTCCCCSSSEE---CHHHHT---TCS
T ss_pred             HHHHHhCCCEEEEE-EEEEecCCEEEEEecCCCcEEEEeCEEEECCCCCCCC-CCCCCCCcCcEE---cHHHHh---hcc
Confidence            35667789999997 4566777666777776 4 579999999999999864 445564433443   233332   222


Q ss_pred             cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEE
Q 014997          131 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  210 (414)
Q Consensus       131 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~  210 (414)
                      ..+++++|||+|++|+|+|..|+++|.+|+++++.++++++.+++++.+.+.+.+++.||++++++.|++++.++++.+ 
T Consensus       176 ~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~-  254 (474)
T 1zmd_A          176 KVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKI-  254 (474)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCSSCCHHHHHHHHHHHHHTTCEEECSEEEEEEEECTTSCE-
T ss_pred             ccCceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCcccCHHHHHHHHHHHHHCCCEEEeCceEEEEEEcCCceE-
Confidence            3579999999999999999999999999999999999998568999999999999999999999999999986544423 


Q ss_pred             EEE-----eCCCcEEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccc
Q 014997          211 AVK-----LEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTAR  282 (414)
Q Consensus       211 ~v~-----~~~g~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~  282 (414)
                      .+.     ..+++++++|.||+|+|++|++++  ++++|++.+ +|+|.||+++||+.|+|||+|||+..+.        
T Consensus       255 ~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~--------  326 (474)
T 1zmd_A          255 DVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGPM--------  326 (474)
T ss_dssp             EEEEEETTSCCCEEEEESEEEECSCEEECCTTSSHHHHTCCCCTTSCCCCCTTCBCSSTTEEECGGGSSSCC--------
T ss_pred             EEEEEecCCCCceEEEcCEEEECcCCCcCCCcCCchhcCCccCCCCCEEECcCCccCCCCEEEeeecCCCCc--------
Confidence            344     356678999999999999999987  788898875 5779999999999999999999997542        


Q ss_pred             cccHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeeccCCCCCCcceeeeEeecCCCc-------EEE-E----------
Q 014997          283 VEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TIE-I----------  343 (414)
Q Consensus       283 ~~~~~~A~~~a~~aa~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~~~-~----------  343 (414)
                        .+..|..||+.+|.||++... ..|..+|+++  .++.       .+..+|....+       ... .          
T Consensus       327 --~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~--~~~~-------~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~  395 (474)
T 1zmd_A          327 --LAHKAEDEGIICVEGMAGGAVHIDYNCVPSVI--YTHP-------EVAWVGKSEEQLKEEGIEYKVGKFPFAANSRAK  395 (474)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCCCCCCGGGCCEEE--CSSS-------EEEEEECCHHHHHHHTCCEEEEEEEGGGCHHHH
T ss_pred             --cHHHHHHHHHHHHHHhcCCCCcCCCCCCCEEE--ECCC-------CeEEEeCCHHHHHhcCCCEEEEEEecccchhhh
Confidence              456799999999999997432 2345577653  2221       14555644321       111 0          


Q ss_pred             -cCCCCcEEEEEEe--CCEEEEEEeecCChHH-hhHHHHHHhCCCCCCh-hh-hcCCCcHHHHHHHHhcCC
Q 014997          344 -GNFDPKIATFWID--SGKLKGVLVESGSPEE-FQLLPTLARSQPFVDK-AK-LQQASSVEEALEIARAAL  408 (414)
Q Consensus       344 -~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~-~~~~~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~  408 (414)
                       .+....|.+++++  +++|+|++++...+.+ +..+..+|+.+.+++. .. +..||++.|++.+|+..+
T Consensus       396 ~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~  466 (474)
T 1zmd_A          396 TNADTDGMVKILGQKSTDRVLGAHILGPGAGEMVNEAALALEYGASCEDIARVCHAHPTLSEAFREANLAA  466 (474)
T ss_dssp             HTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHHSCCCTTCTHHHHHHHHHHH
T ss_pred             hcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCCHHHHHHHHHHHH
Confidence             0112347788887  6999999986666655 4566778899998887 33 688999999999998653

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=100.00  E-value=7.2e-37  Score=307.75  Aligned_cols=325  Identities=17%  Similarity=0.238  Sum_probs=245.5

Q ss_pred             hHHHHcCCeEEcCCcEEEEeCCCCEEEeCCC--cEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhc
Q 014997           54 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE  131 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g--~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~  131 (414)
                      +++++.+|+++.++ +..+++....|.+.+|  +++.||+||+|||++|.. |+++|.+.++++   +..+...   ...
T Consensus       101 ~~~~~~~v~~~~g~-~~~i~~~~~~v~~~~G~~~~~~~d~lviAtG~~p~~-p~~~g~~~~~v~---t~~~~~~---~~~  172 (468)
T 2qae_A          101 YLFKKNKVTYYKGE-GSFETAHSIRVNGLDGKQEMLETKKTIIATGSEPTE-LPFLPFDEKVVL---SSTGALA---LPR  172 (468)
T ss_dssp             HHHHHHTCEEEEEE-EEEEETTEEEEEETTSCEEEEEEEEEEECCCEEECC-BTTBCCCSSSEE---CHHHHHT---CSS
T ss_pred             HHHHhCCCEEEEEE-EEEeeCCEEEEEecCCceEEEEcCEEEECCCCCcCC-CCCCCCCcCcee---chHHHhh---ccc
Confidence            45667899999975 4558877667777788  789999999999999864 444564444544   3333332   223


Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHH-HhCCcEEEcCceEEEEEecCCCcEE
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY-QQNGVKFVKGASIKNLEAGSDGRVA  210 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l-~~~gv~i~~~~~v~~i~~~~~~~~~  210 (414)
                      .+++++|||+|++|+|+|..|+++|.+|+++++.+++++ .+++++.+.+.+.+ ++.||+++++++|++++.++++ + 
T Consensus       173 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~~d~~~~~~l~~~l~~~~gv~i~~~~~v~~i~~~~~~-~-  249 (468)
T 2qae_A          173 VPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAP-TLDEDVTNALVGALAKNEKMKFMTSTKVVGGTNNGDS-V-  249 (468)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHHTCCEEECSCEEEEEEECSSS-E-
T ss_pred             CCceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcccc-cCCHHHHHHHHHHHhhcCCcEEEeCCEEEEEEEcCCe-E-
Confidence            579999999999999999999999999999999999998 58999999999999 9999999999999999865433 2 


Q ss_pred             EEEeC--CC--cEEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccc-cCCccCCcccc
Q 014997          211 AVKLE--DG--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAA-FPLKMYDRTAR  282 (414)
Q Consensus       211 ~v~~~--~g--~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~-~~~~~~~~~~~  282 (414)
                      .+.+.  +|  ++++||.||+|+|++|++++  ++++|++.+ +|+|.||+++||+.|+|||+|||+. .+.        
T Consensus       250 ~v~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~~--------  321 (468)
T 2qae_A          250 SLEVEGKNGKRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHFETSIPDVYAIGDVVDKGPM--------  321 (468)
T ss_dssp             EEEEECC---EEEEEESEEEECSCEEECCTTSCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECGGGBSSSCS--------
T ss_pred             EEEEEcCCCceEEEECCEEEECCCcccCCCCCCchhcCCccCCCCCEeECCCcccCCCCEEEeeccCCCCCc--------
Confidence            45554  66  67999999999999999987  788898875 5779999999999999999999998 322        


Q ss_pred             cccHHHHHHHHHHHHHHHhcCCCCC--CCCCCceeeeccCCCCCCcceeeeEeecCCC-------cEEEE----------
Q 014997          283 VEHVDHARQSAQHCIKALLSAQTHT--YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETIEI----------  343 (414)
Q Consensus       283 ~~~~~~A~~~a~~aa~~i~~~~~~~--~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~~~~----------  343 (414)
                        .+..|..||+.+|.||++. ..+  +..+|++  ..++.       .+..+|....       +....          
T Consensus       322 --~~~~A~~~g~~aa~~i~~~-~~~~~~~~~p~~--~~~~~-------~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~  389 (468)
T 2qae_A          322 --LAHKAEDEGVACAEILAGK-PGHVNYGVIPAV--IYTMP-------EVASVGKSEDELKKEGVAYKVGKFPFNANSRA  389 (468)
T ss_dssp             --CHHHHHHHHHHHHHHHTTC-CCCCCTTSCCEE--ECSSS-------EEEEEECCHHHHHHTTCCEEEEEEEGGGCHHH
T ss_pred             --cHhHHHHHHHHHHHHHcCC-CccCCCCCCCEE--EECCC-------ceEEEeCCHHHHHhcCCCEEEEEEecccchhh
Confidence              4667999999999999974 333  3445643  22222       1455564321       11110          


Q ss_pred             --cCCCCcEEEEEEe--CCEEEEEEeecCChHHh-hHHHHHHhCCCCCChh-h-hcCCCcHHHHHHHHhcCCC
Q 014997          344 --GNFDPKIATFWID--SGKLKGVLVESGSPEEF-QLLPTLARSQPFVDKA-K-LQQASSVEEALEIARAALP  409 (414)
Q Consensus       344 --~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~-~~~~~l~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~  409 (414)
                        .+....|.+++++  +++|+|++++...+.++ ..+..+|+.+.+++.- . +..||++.|++.+|+..+.
T Consensus       390 ~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~  462 (468)
T 2qae_A          390 KAVSTEDGFVKVLVDKATDRILGVHIVCTTAGELIGEACLAMEYGASSEDVGRTCHAHPTMSEALKEACMALF  462 (468)
T ss_dssp             HHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCTHHHHHHHHHHHH
T ss_pred             hhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHHHHHHHHHHh
Confidence              0112347788886  69999999876666554 4556678999888872 2 6889999999999987654

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=100.00  E-value=3.7e-37  Score=312.20  Aligned_cols=328  Identities=19%  Similarity=0.214  Sum_probs=252.0

Q ss_pred             HhHHHHcCCeEEcCCcEEEEeC------CCCEEEeCCCc--EEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHH
Q 014997           53 PEWYKEKGIEMIYQDPVTSIDI------EKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADAD  124 (414)
Q Consensus        53 ~~~~~~~~i~~~~~~~V~~id~------~~~~V~~~~g~--~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~  124 (414)
                      .+++++.||+++.+ +++.+++      ....|.+++|+  .+.||+||+|||++|.. |.++|.+..++++..+..   
T Consensus       102 ~~~~~~~gv~~~~g-~~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviATGs~p~~-p~i~g~~~~~v~~~~~~~---  176 (499)
T 1xdi_A          102 TAQLLSMGVQVIAG-RGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRI-LPSAQPDGERILTWRQLY---  176 (499)
T ss_dssp             HHHHHHTTCEEEES-EEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECC-CGGGCCCSSSEEEGGGGG---
T ss_pred             HHHHHhCCCEEEEe-EEEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCC-CCCCCCCcCcEEehhHhh---
Confidence            45667889999997 5888887      23356666776  79999999999999864 445665555666543222   


Q ss_pred             HHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEec
Q 014997          125 ALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG  204 (414)
Q Consensus       125 ~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~  204 (414)
                         .....+++++|||+|++|+|+|..|+++|.+|+++++.+++++. +++++.+.+.+.+++.||++++++.|++++.+
T Consensus       177 ---~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~  252 (499)
T 1xdi_A          177 ---DLDALPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPY-EDADAALVLEESFAERGVRLFKNARAASVTRT  252 (499)
T ss_dssp             ---GCSSCCSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCC-SSHHHHHHHHHHHHHTTCEEETTCCEEEEEEC
T ss_pred             ---hhhccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEe
Confidence               22235789999999999999999999999999999999999985 89999999999999999999999999999865


Q ss_pred             CCCcEEEEEeCCCcEEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCccc
Q 014997          205 SDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA  281 (414)
Q Consensus       205 ~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~  281 (414)
                      +++ + .+.+.+|+++++|.||+|+|++|++++  ++++|++.+ +|+|.||+++||+.|+|||+|||+..+.       
T Consensus       253 ~~~-v-~v~~~~g~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~-------  323 (499)
T 1xdi_A          253 GAG-V-LVTMTDGRTVEGSHALMTIGSVPNTSGLGLERVGIQLGRGNYLTVDRVSRTLATGIYAAGDCTGLLP-------  323 (499)
T ss_dssp             SSS-E-EEEETTSCEEEESEEEECCCEEECCSSSCTTTTTCCCBTTTBCCCCSSSBCSSTTEEECSGGGTSCS-------
T ss_pred             CCE-E-EEEECCCcEEEcCEEEECCCCCcCCCcCCchhcCceECCCCCEEECCCcccCCCCEEEEeccCCCcc-------
Confidence            333 3 567888889999999999999999988  788898876 4779999999999999999999997542       


Q ss_pred             ccccHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeeeccCCCCCCcceeeeEeecCCCc-------EEE-E--------
Q 014997          282 RVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TIE-I--------  343 (414)
Q Consensus       282 ~~~~~~~A~~~a~~aa~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~~~-~--------  343 (414)
                         .+..|..||+.+|.||++....  .+..+|+++  .++.       .+..+|....+       ... .        
T Consensus       324 ---l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~--~~~~-------~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~  391 (499)
T 1xdi_A          324 ---LASVAAMQGRIAMYHALGEGVSPIRLRTVAATV--FTRP-------EIAAVGVPQSVIDAGSVAARTIMLPLRTNAR  391 (499)
T ss_dssp             ---CHHHHHHHHHHHHHHHTTCCCCCCCGGGCEEEE--CSSS-------EEEEEESCHHHHHHTSSCEEEEEEESTTSHH
T ss_pred             ---cHHHHHHHHHHHHHHhcCCCCccCCCCCCcEEE--EecC-------CceEeCCCHHHHHhCCCCEEEEEEecCcccc
Confidence               4567999999999999975222  344566643  2221       25666754321       111 0        


Q ss_pred             ---cCCCCcEEEEEEe--CCEEEEEEeecCChHHh-hHHHHHHhCCCCCChh-h-hcCCCcHHHHHHHHhcCCCc
Q 014997          344 ---GNFDPKIATFWID--SGKLKGVLVESGSPEEF-QLLPTLARSQPFVDKA-K-LQQASSVEEALEIARAALPV  410 (414)
Q Consensus       344 ---~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~-~~~~~l~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~  410 (414)
                         .+....|.+++++  +++|+|++++...+.++ ..+..+|+.+.+++.- . +..+|++.|++.+++..+..
T Consensus       392 ~~~~~~~~g~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~~  466 (499)
T 1xdi_A          392 AKMSEMRHGFVKIFCRRSTGVVIGGVVVAPIASELILPIAVAVQNRITVNELAQTLAVYPSLSGSITEAARRLMA  466 (499)
T ss_dssp             HHHTTCSSCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSBCCSSSTHHHHHHHHHHHCC
T ss_pred             eeecCCCceEEEEEEECCCCEEEEEEEECCchHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHHHHhc
Confidence               0112347788887  59999999876666664 4556678889888872 2 78899999999999876543

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=100.00  E-value=2.6e-36  Score=307.50  Aligned_cols=325  Identities=22%  Similarity=0.279  Sum_probs=250.5

Q ss_pred             HHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCC-Ce
Q 014997           57 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA-KK  135 (414)
Q Consensus        57 ~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~-~~  135 (414)
                      ++.++++++..+++.+++  ++|.+. |+.+.||+||||||++|. .|.++|.+.+++++.   .+...  ...... ++
T Consensus       146 ~~~gv~~~~~~~v~~i~~--~~v~~~-g~~~~~d~lViATGs~p~-~p~i~G~~~~~v~~~---~~~~~--~l~~~~g~~  216 (523)
T 1mo9_A          146 EQLNLEYILNCPAKVIDN--HTVEAA-GKVFKAKNLILAVGAGPG-TLDVPGVNAKGVFDH---ATLVE--ELDYEPGST  216 (523)
T ss_dssp             HTSCCCEEESSCCEEEET--TEEEET-TEEEEBSCEEECCCEECC-CCCSTTTTSBTEEEH---HHHHH--HCCSCCCSE
T ss_pred             ccCCcEEEEeeEEEEeeC--CEEEEC-CEEEEeCEEEECCCCCCC-CCCCCCcccCcEeeH---HHHHH--HHHhcCCCe
Confidence            778999994568888886  577776 778999999999999987 455677655566643   22220  212234 99


Q ss_pred             EEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcE--EEEE
Q 014997          136 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV--AAVK  213 (414)
Q Consensus       136 vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~--~~v~  213 (414)
                      ++|||+|++|+|+|..|+++|.+|+++++.+++++. +++++.+.+.+.+++.||++++++.|+++...+++.+  ..+.
T Consensus       217 vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~  295 (523)
T 1mo9_A          217 VVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLI-KDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAM  295 (523)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTC-CSHHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEE
T ss_pred             EEEECCCHHHHHHHHHHHHcCCeEEEEEecCccccc-ccHHHHHHHHHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEE
Confidence            999999999999999999999999999999999884 8999999999999999999999999999986545543  3677


Q ss_pred             eCCCc-EEecCEEEEccCCcCCCh-hhhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHH
Q 014997          214 LEDGS-TIDADTIVIGIGAKPTVS-PFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHAR  290 (414)
Q Consensus       214 ~~~g~-~i~~D~vi~a~G~~p~~~-~l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~  290 (414)
                      +++|+ +++||.||+|+|++|+++ +++++|++.+ +|+|.||+++||+.|+|||+|||+..+.          .+..|.
T Consensus       296 ~~~G~~~i~aD~Vv~A~G~~p~~~~~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~----------~~~~A~  365 (523)
T 1mo9_A          296 TPNGEMRIETDFVFLGLGEQPRSAELAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGPM----------EMFKAR  365 (523)
T ss_dssp             ETTEEEEEECSCEEECCCCEECCHHHHHHHTCCBCTTSCBCCCTTSBCSSTTEEECGGGGCSSC----------SHHHHH
T ss_pred             ECCCcEEEEcCEEEECcCCccCCccCHHHcCCccCCCCCEEECCCCccCCCCEEEEeecCCCcc----------cHHHHH
Confidence            88887 899999999999999998 7999999875 6779999999999999999999997542          455699


Q ss_pred             HHHHHHHHHHhcCCCC-CCCCCCceeeeccCCCCCCcceeeeEeecCCC-------cEEE----EcC-------------
Q 014997          291 QSAQHCIKALLSAQTH-TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETIE----IGN-------------  345 (414)
Q Consensus       291 ~~a~~aa~~i~~~~~~-~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~~~----~~~-------------  345 (414)
                      .||+.+|.||++.... .+..+|+++....         .+..+|....       +...    ..+             
T Consensus       366 ~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~---------~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  436 (523)
T 1mo9_A          366 KSGCYAARNVMGEKISYTPKNYPDFLHTHY---------EVSFLGMGEEEARAAGHEIVTIKMPPDTENGLNVALPASDR  436 (523)
T ss_dssp             HHHHHHHHHHTTCCCCCCCCSCCEEEESSS---------EEEEEECCHHHHHHTTCCEEEEEESCCSTTTTCSSCSCCTT
T ss_pred             HHHHHHHHHHcCCCCCCCCCCCCeEEECCC---------ceEEEeCCHHHHHhCCCCEEEEEEecccccccccccccccc
Confidence            9999999999974322 2556787653221         1445554321       1111    000             


Q ss_pred             -----------CCCcEEEEEEe--CCEEEEEEeecCChHHh-hHHHHHHhCCCCCCh--hh--hcCCCcHHHHHHHHhcC
Q 014997          346 -----------FDPKIATFWID--SGKLKGVLVESGSPEEF-QLLPTLARSQPFVDK--AK--LQQASSVEEALEIARAA  407 (414)
Q Consensus       346 -----------~~~~~~~~~~~--~~~~~g~~~~~~~~~~~-~~~~~l~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~  407 (414)
                                 ...-|.+++++  +++|+|+++++..+.++ ..+..+|+.+.+++.  ..  +..||++.|++..+++.
T Consensus       437 ~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~~Pt~~e~~~~~~~~  516 (523)
T 1mo9_A          437 TMLYAFGKGTAHMSGFQKIVIDAKTRKVLGAHHVGYGAKDAFQYLNVLIKQGLTVDELGDMDELFLNPTHFIQLSRLRAG  516 (523)
T ss_dssp             THHHHHSTTTGGGGCEEEEEEETTTCBEEEEEEEESSCHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSCCHHHHHHHHTT
T ss_pred             cccceEEeecCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHhCCcceECCCHHHHHHHHHHh
Confidence                       01237777775  69999999876666654 556677899998887  22  68899999999999887


Q ss_pred             CCc
Q 014997          408 LPV  410 (414)
Q Consensus       408 ~~~  410 (414)
                      +.+
T Consensus       517 ~~~  519 (523)
T 1mo9_A          517 SKN  519 (523)
T ss_dssp             CSS
T ss_pred             hHh
Confidence            653

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=100.00  E-value=6.2e-37  Score=307.89  Aligned_cols=324  Identities=21%  Similarity=0.273  Sum_probs=243.0

Q ss_pred             hHHHHcCCeEEcCCcEEEEeCCCCEEEeCCC--cEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhc
Q 014997           54 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE  131 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g--~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~  131 (414)
                      +++++.+|+++.++.+. ++.+..+|.+.+|  +++.||+||+|||++|+. |..++.+.. +   .+..+...   ...
T Consensus        99 ~~~~~~gv~~~~g~~~~-id~~~v~V~~~~G~~~~~~~d~lViAtG~~~~~-~~~~g~~~~-~---~~~~~~~~---~~~  169 (464)
T 2a8x_A           99 FLMKKNKITEIHGYGTF-ADANTLLVDLNDGGTESVTFDNAIIATGSSTRL-VPGTSLSAN-V---VTYEEQIL---SRE  169 (464)
T ss_dssp             HHHHHTTCEEECEEEEE-SSSSEEEEEETTSCCEEEEEEEEEECCCEEECC-CTTCCCBTT-E---ECHHHHHT---CSS
T ss_pred             HHHHhCCCEEEEeEEEE-ecCCeEEEEeCCCceEEEEcCEEEECCCCCCCC-CCCCCCCce-E---EecHHHhh---ccc
Confidence            45667899999976543 5554456677777  689999999999999864 444453322 2   23343332   223


Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEE
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  211 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~  211 (414)
                      .+++++|||+|++|+|+|..|+++|.+||++++.+++++ .+++++.+.+.+.+++.||++++++.|++++.++++ + .
T Consensus       170 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~-~-~  246 (464)
T 2a8x_A          170 LPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALP-NEDADVSKEIEKQFKKLGVTILTATKVESIADGGSQ-V-T  246 (464)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHHTCEEECSCEEEEEEECSSC-E-E
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCcccc-ccCHHHHHHHHHHHHHcCCEEEeCcEEEEEEEcCCe-E-E
Confidence            579999999999999999999999999999999999998 589999999999999999999999999999865333 2 4


Q ss_pred             EEeC-CC--cEEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCccccccc
Q 014997          212 VKLE-DG--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEH  285 (414)
Q Consensus       212 v~~~-~g--~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~  285 (414)
                      +.+. +|  +++++|.|++|+|++||+++  ++++|+..+ +|+|.||+++||+.|+|||+|||+..+.          .
T Consensus       247 v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~----------~  316 (464)
T 2a8x_A          247 VTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYMRTNVGHIYAIGDVNGLLQ----------L  316 (464)
T ss_dssp             EEEESSSCEEEEEESEEEECSCEEECCSSSCHHHHTCCBCTTSSBCCCTTSBCSSTTEEECGGGGCSSC----------S
T ss_pred             EEEEcCCceEEEEcCEEEECCCCCccCCCCCchhcCCccCCCCCEeECcCCccCCCCEEEeECcCCCcc----------C
Confidence            5553 56  67999999999999999987  788898875 5779999999999999999999997532          4


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCC---CCCCCceeeeccCCCCCCcceeeeEeecCCC-------cEEE-------------
Q 014997          286 VDHARQSAQHCIKALLSAQTHT---YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETIE-------------  342 (414)
Q Consensus       286 ~~~A~~~a~~aa~~i~~~~~~~---~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~~~-------------  342 (414)
                      +..|..||+.+|+||++....+   |..+|++  ..++.       .+..+|....       +...             
T Consensus       317 ~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~--~~~~~-------~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~  387 (464)
T 2a8x_A          317 AHVAEAQGVVAAETIAGAETLTLGDHRMLPRA--TFCQP-------NVASFGLTEQQARNEGYDVVVAKFPFTANAKAHG  387 (464)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCCCCCCGGGSCEE--ECSSS-------EEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCcccCCCCCCCEE--EECCC-------CeEEEcCCHHHHHhcCCCEEEEEEEcchhhhhhh
Confidence            5679999999999999723333   4456653  22221       1445554321       1111             


Q ss_pred             EcCCCCcEEEEEEe--CCEEEEEEeecCChHHh-hHHHHHHhCCCCCChh-h-hcCCCcHHHHHHHHhcCCC
Q 014997          343 IGNFDPKIATFWID--SGKLKGVLVESGSPEEF-QLLPTLARSQPFVDKA-K-LQQASSVEEALEIARAALP  409 (414)
Q Consensus       343 ~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~-~~~~~l~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~  409 (414)
                      .++ ...|.+++++  +++|+|++++...+.++ ..+..+|+.+.+++.- . +..||++.|++.+|+..+.
T Consensus       388 ~~~-~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~  458 (464)
T 2a8x_A          388 VGD-PSGFVKLVADAKHGELLGGHLVGHDVAELLPELTLAQRWDLTASELARNVHTHPTMSEALQECFHGLV  458 (464)
T ss_dssp             HTC-CCCEEEEEEETTTTEEEEEEEEETTGGGGHHHHHHHHHTTCBHHHHTTSCCCTTCTTHHHHHHHHHHH
T ss_pred             cCC-CcEEEEEEEECCCCEEEEEEEECcCHHHHHHHHHHHHHCCCCHHHHhhCccCCCChHHHHHHHHHHHh
Confidence            111 2347788886  69999999876666554 4556678999888772 2 6889999999999986544

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=1.3e-36  Score=304.88  Aligned_cols=322  Identities=23%  Similarity=0.335  Sum_probs=241.6

Q ss_pred             hHHHHcCCeEEcCCcEEEEeCCCCEEEeCCC-cEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcC
Q 014997           54 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSG-KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK  132 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g-~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~  132 (414)
                      +++++.+++++.++. ..+++....|.+.+| +++.||+||||||++|.. |.+++.+.. +   .+..+..   .....
T Consensus        99 ~~~~~~gv~~~~g~~-~~id~~~v~V~~~~G~~~i~~d~lViATGs~p~~-~~~~g~~~~-v---~~~~~~~---~~~~~  169 (455)
T 1ebd_A           99 GLLKGNKVEIVKGEA-YFVDANTVRVVNGDSAQTYTFKNAIIATGSRPIE-LPNFKFSNR-I---LDSTGAL---NLGEV  169 (455)
T ss_dssp             HHHHTTTCEEEESEE-EEEETTEEEEEETTEEEEEECSEEEECCCEEECC-BTTBCCCSS-E---ECHHHHH---TCSSC
T ss_pred             HHHHhCCCEEEEEEE-EEccCCeEEEEeCCCcEEEEeCEEEEecCCCCCC-CCCCCccce-E---ecHHHHh---ccccC
Confidence            456678999999854 457776667777777 689999999999999864 444453322 2   2333332   22235


Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEE
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV  212 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v  212 (414)
                      +++++|||+|++|+|+|..|+++|.+|+++++.+++++ .+++++.+.+.+.+++.||++++++.|++++.++++ + .+
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~-~-~v  246 (455)
T 1ebd_A          170 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILS-GFEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDG-V-TV  246 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-TSCHHHHHHHHHHHHHTTCEEEESEEEEEEEEETTE-E-EE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc-ccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCe-E-EE
Confidence            79999999999999999999999999999999999987 489999999999999999999999999999864332 2 34


Q ss_pred             EeC---CCcEEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccH
Q 014997          213 KLE---DGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHV  286 (414)
Q Consensus       213 ~~~---~g~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~  286 (414)
                      .+.   +++++++|.||+|+|++|++++  ++++|++.+ +|+|.||+++||+.|+|||+|||+..+.          .+
T Consensus       247 ~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~~~----------~~  316 (455)
T 1ebd_A          247 TYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIVPGPA----------LA  316 (455)
T ss_dssp             EEEETTEEEEEEESEEEECSCEEESCSSSSTTTTTCCBCTTSCBCCCTTCBCSSTTEEECGGGSSSCC----------CH
T ss_pred             EEEeCCceeEEEcCEEEECcCCCcccCcCChhhcCCccCCCCCEeeCCCcccCCCCEEEEeccCCCcc----------cH
Confidence            443   4568999999999999999887  678888875 5779999999999999999999997532          45


Q ss_pred             HHHHHHHHHHHHHHhcCCCCC--CCCCCceeeeccCCCCCCcceeeeEeecCCC-------cEEE-------------Ec
Q 014997          287 DHARQSAQHCIKALLSAQTHT--YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETIE-------------IG  344 (414)
Q Consensus       287 ~~A~~~a~~aa~~i~~~~~~~--~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~~~-------------~~  344 (414)
                      ..|..||+.+|+||++. ..+  +..+|++  ..++..       +..+|....       +...             .+
T Consensus       317 ~~A~~~g~~aa~~i~~~-~~~~~~~~~p~~--~~~~~~-------~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~  386 (455)
T 1ebd_A          317 HKASYEGKVAAEAIAGH-PSAVDYVAIPAV--VFSDPE-------CASVGYFEQQAKDEGIDVIAAKFPFAANGRALALN  386 (455)
T ss_dssp             HHHHHHHHHHHHHHTSC-CCCCCCSCCCEE--ECSSSC-------EEEEECCHHHHHTTTCCEEEEEEEGGGCHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCC-CccCCCCCCCEE--EECCCc-------eEEEeCCHHHHHhcCCCEEEEEEEcCcchHHhhcC
Confidence            67999999999999974 334  3445643  222221       344554321       1111             11


Q ss_pred             CCCCcEEEEEEe--CCEEEEEEeecCChHHh-hHHHHHHhCCCCCCh-hh-hcCCCcHHHHHHHHhcCC
Q 014997          345 NFDPKIATFWID--SGKLKGVLVESGSPEEF-QLLPTLARSQPFVDK-AK-LQQASSVEEALEIARAAL  408 (414)
Q Consensus       345 ~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~-~~~~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~  408 (414)
                      + ...|.+++++  +++|+|++++...+.++ ..+..+|+.+.+++. .. +..||+++|++.+|+..+
T Consensus       387 ~-~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~  454 (455)
T 1ebd_A          387 D-TDGFLKLVVRKEDGVIIGAQIIGPNASDMIAELGLAIEAGMTAEDIALTIHAHPTLGEIAMEAAEVA  454 (455)
T ss_dssp             C-CCCEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHHTCBHHHHHHSCCCTTSSTHHHHHHHHHT
T ss_pred             C-CcEEEEEEEECCCCEEEEEEEeCCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHHHHHHHHHh
Confidence            1 2347788876  69999999866666554 455567888988887 23 789999999999998654

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=100.00  E-value=6.6e-37  Score=308.82  Aligned_cols=327  Identities=19%  Similarity=0.295  Sum_probs=243.4

Q ss_pred             hHHHHcCCeEEcCCcEEEEeCCCCEEEeCCC--cE------EecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHH
Q 014997           54 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KL------LKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADA  125 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g--~~------~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~  125 (414)
                      +++++.+|+++.++.+. ++....+|.+.+|  ++      +.||+||+|||++|+.+   ++....+ ..+.+..++..
T Consensus       104 ~~~~~~gv~~~~g~~~~-~~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtGs~p~~~---~g~~~~~-~~v~~~~~~~~  178 (478)
T 1v59_A          104 LLFKKNKVTYYKGNGSF-EDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPF---PGIEIDE-EKIVSSTGALS  178 (478)
T ss_dssp             HHHHHTTCEEEESEEEE-SSSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEEECCC---TTCCCCS-SSEECHHHHTT
T ss_pred             HHHHhCCCEEEEEEEEE-ccCCeEEEEecCCCcccccccceEEeCEEEECcCCCCCCC---CCCCCCC-ceEEcHHHHHh
Confidence            45677899999986554 3444445666676  56      99999999999987533   3433333 12233444332


Q ss_pred             HHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecC
Q 014997          126 LISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS  205 (414)
Q Consensus       126 ~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~  205 (414)
                      +   ...+++++|||+|++|+|+|..|+++|.+||++++.+++++ .+++++.+.+.+.+++.||++++++.|+++...+
T Consensus       179 ~---~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~  254 (478)
T 1v59_A          179 L---KEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA-SMDGEVAKATQKFLKKQGLDFKLSTKVISAKRND  254 (478)
T ss_dssp             C---SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSS-SSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEET
T ss_pred             h---hccCceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcccc-ccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEec
Confidence            2   23479999999999999999999999999999999999998 6899999999999999999999999999998521


Q ss_pred             CCcEEEEEeC-----CCcEEecCEEEEccCCcCCCh--hhhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccC
Q 014997          206 DGRVAAVKLE-----DGSTIDADTIVIGIGAKPTVS--PFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMY  277 (414)
Q Consensus       206 ~~~~~~v~~~-----~g~~i~~D~vi~a~G~~p~~~--~l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~  277 (414)
                      ++....+.+.     +++++++|.||+|+|.+|+++  +++++|++.+ +|+|.||+++||+.|+|||+|||+..+.   
T Consensus       255 ~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~---  331 (478)
T 1v59_A          255 DKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGPM---  331 (478)
T ss_dssp             TTTEEEEEEEETTTTEEEEEEESEEEECSCEEECCTTSCTTTTTCCBCTTSCBCCCTTSBCSSTTEEECGGGSSSCC---
T ss_pred             CCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCCCCCCchhcCceeCCCCCEeECcCCccCCCCEEEeeccCCCcc---
Confidence            2333355554     456899999999999999998  7888999876 6779999999999999999999998542   


Q ss_pred             CcccccccHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeeccCCCCCCcceeeeEeecCCC-------cEEE-------
Q 014997          278 DRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETIE-------  342 (414)
Q Consensus       278 ~~~~~~~~~~~A~~~a~~aa~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~~~-------  342 (414)
                             .+..|..||+.+|+||++... ..|..+|++|.....         +..+|....       +...       
T Consensus       332 -------~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~---------~a~vG~~e~~a~~~g~~~~~~~~~~~~  395 (478)
T 1v59_A          332 -------LAHKAEEEGIAAVEMLKTGHGHVNYNNIPSVMYSHPE---------VAWVGKTEEQLKEAGIDYKIGKFPFAA  395 (478)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHSCCCCCTTSCCEEECSSSE---------EEEEECCHHHHHHTTCCEEEEEEEGGG
T ss_pred             -------cHHHHHHHHHHHHHHHcCCCCCCCCCCCCEEEEcCCc---------EEEEECCHHHHHHcCCCEEEEEEeccc
Confidence                   456799999999999997432 346678877654322         344454321       1111       


Q ss_pred             ------EcCCCCcEEEEEEe--CCEEEEEEeecCChHH-hhHHHHHHhCCCCCCh-hh-hcCCCcHHHHHHHHhcCCC
Q 014997          343 ------IGNFDPKIATFWID--SGKLKGVLVESGSPEE-FQLLPTLARSQPFVDK-AK-LQQASSVEEALEIARAALP  409 (414)
Q Consensus       343 ------~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~-~~~~~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~  409 (414)
                            .++ ...+.+++++  +++|+|++++...+.+ +..+..+|+.+.+++. .. ...+|++.|++..++..+.
T Consensus       396 ~~~~~~~~~-~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~  472 (478)
T 1v59_A          396 NSRAKTNQD-TEGFVKILIDSKTERILGAHIIGPNAGEMIAEAGLALEYGASAEDVARVCHAHPTLSEAFKEANMAAY  472 (478)
T ss_dssp             CHHHHHTTC-CCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCTTHHHHHHHHHHH
T ss_pred             chhhhhcCC-CcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCCCCCCCHHHHHHHHHHHHh
Confidence                  111 2235666665  6999999986666545 5667778899998866 33 6789999999999886543

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=9.9e-37  Score=306.92  Aligned_cols=324  Identities=20%  Similarity=0.316  Sum_probs=243.9

Q ss_pred             hHHHHcCCeEEcCCcEEEEeCCCCEEEeCCC--cEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhc
Q 014997           54 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE  131 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g--~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~  131 (414)
                      +++++.+++++.++.+ .++.+...|.+++|  +++.||+||+|||++|.. |.++|.+.+++++   ..+..   ....
T Consensus       104 ~~~~~~gv~~~~g~~~-~~~~~~~~v~~~~G~~~~i~~d~lIiAtGs~p~~-p~~~g~~~~~v~~---~~~~~---~~~~  175 (470)
T 1dxl_A          104 GLFKKNKVTYVKGYGK-FVSPSEISVDTIEGENTVVKGKHIIIATGSDVKS-LPGVTIDEKKIVS---STGAL---ALSE  175 (470)
T ss_dssp             HHHHHHTCEEEESCEE-EEETTEEEECCSSSCCEEEECSEEEECCCEEECC-BTTBCCCSSSEEC---HHHHT---TCSS
T ss_pred             HHHHhCCCEEEEeEEE-EecCCEEEEEeCCCceEEEEcCEEEECCCCCCCC-CCCCCCCcccEEe---HHHhh---hhhh
Confidence            4566789999998654 47776556666677  689999999999999864 4445544344443   33322   2223


Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEE
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  211 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~  211 (414)
                      .+++++|||+|++|+|+|..|+++|.+|+++++.+++++ .+++++.+.+.+.+++.||++++++.|++++.++++ + .
T Consensus       176 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~-~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~-~-~  252 (470)
T 1dxl_A          176 IPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP-TMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDG-V-K  252 (470)
T ss_dssp             CCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHSSCCEECSEEEEEEECSSSS-E-E
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc-cccHHHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCe-E-E
Confidence            579999999999999999999999999999999999988 589999999999999999999999999999865333 2 3


Q ss_pred             EEeC---CC--cEEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCccccc
Q 014997          212 VKLE---DG--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARV  283 (414)
Q Consensus       212 v~~~---~g--~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~  283 (414)
                      +.+.   +|  +++++|.||+|+|++|++++  ++++|+..+ +|+|.||+++||+.|+|||+|||+..+.         
T Consensus       253 v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~~~---------  323 (470)
T 1dxl_A          253 LTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGPM---------  323 (470)
T ss_dssp             EEEEESSSCCCEEEEESEEECCCCEEECCTTSCCTTTTCCBCSSSCBCCCTTCBCSSTTEEECSTTSSSCC---------
T ss_pred             EEEEecCCCcceEEECCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECcCCccCCCCEEEEeccCCCCc---------
Confidence            4443   44  68999999999999999987  688888875 5779999999999999999999997532         


Q ss_pred             ccHHHHHHHHHHHHHHHhcCCCCCC--CCCCceeeeccCCCCCCcceeeeEeecCCC-------cEEE------------
Q 014997          284 EHVDHARQSAQHCIKALLSAQTHTY--DYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETIE------------  342 (414)
Q Consensus       284 ~~~~~A~~~a~~aa~~i~~~~~~~~--~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~~~------------  342 (414)
                       .+..|..||+.+|.||++. ..++  ..+|++  ..++.       .+..+|....       +...            
T Consensus       324 -~~~~A~~~g~~aa~~i~g~-~~~~~~~~~p~~--~~~~~-------~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~  392 (470)
T 1dxl_A          324 -LAHKAEEDGVACVEYLAGK-VGHVDYDKVPGV--VYTNP-------EVASVGKTEEQVKETGVEYRVGKFPFMANSRAK  392 (470)
T ss_dssp             -CHHHHHHHHHHHHHHHTTS-CCCCCTTSCCEE--ECSSS-------EEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHH
T ss_pred             -cHHHHHHHHHHHHHHHcCC-CcCCCCCCCCEE--EECCC-------ceEEEcCCHHHHHhcCCcEEEEEEecccchHHH
Confidence             4567999999999999974 3343  445543  22222       1445554321       1111            


Q ss_pred             -EcCCCCcEEEEEEe--CCEEEEEEeecCChHHh-hHHHHHHhCCCCCChh-h-hcCCCcHHHHHHHHhcCCC
Q 014997          343 -IGNFDPKIATFWID--SGKLKGVLVESGSPEEF-QLLPTLARSQPFVDKA-K-LQQASSVEEALEIARAALP  409 (414)
Q Consensus       343 -~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~-~~~~~l~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~  409 (414)
                       .++ ...|.+++++  +++|+|++++...+.++ ..+..+|+.+.+++.- . +..||++.|++.+|+..+.
T Consensus       393 ~~~~-~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~  464 (470)
T 1dxl_A          393 AIDN-AEGLVKIIAEKETDKILGVHIMAPNAGELIHEAAIALQYDASSEDIARVCHAHPTMSEAIKEAAMATY  464 (470)
T ss_dssp             HHSC-CCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCTTHHHHHHHHHHH
T ss_pred             hcCC-CcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHHHHHHHh
Confidence             111 2347788886  69999999876666554 4555678999888872 2 6889999999999986544

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=100.00  E-value=4.5e-36  Score=301.88  Aligned_cols=324  Identities=18%  Similarity=0.250  Sum_probs=247.3

Q ss_pred             hHHHHc-CCeEEcCCcEEEEeCCCCEEEeCCC--cEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhh
Q 014997           54 EWYKEK-GIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL  130 (414)
Q Consensus        54 ~~~~~~-~i~~~~~~~V~~id~~~~~V~~~~g--~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~  130 (414)
                      +++++. +|+++.+ ++..+++...+|.+.+|  +++.||+||||||++|+ .|.++|.+..+++   +..+   +....
T Consensus       102 ~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~-~p~i~G~~~~~~~---~~~~---~~~~~  173 (467)
T 1zk7_A          102 GILGGNPAITVVHG-EARFKDDQSLTVRLNEGGERVVMFDRCLVATGASPA-VPPIPGLKESPYW---TSTE---ALASD  173 (467)
T ss_dssp             HHHTTCTTEEEEEE-EEEEEETTEEEEEETTSSEEEEECSEEEECCCEEEC-CCCCTTTTTSCCB---CHHH---HHHCS
T ss_pred             HHHhccCCeEEEEE-EEEEccCCEEEEEeCCCceEEEEeCEEEEeCCCCCC-CCCCCCCCcCcee---cHHH---Hhccc
Confidence            455666 9999987 68889887777888888  68999999999999986 4555664333332   3333   33333


Q ss_pred             cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEE
Q 014997          131 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  210 (414)
Q Consensus       131 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~  210 (414)
                      ..+++++|||+|++|+|+|..|+++|.+|+++++.+++++  +++++.+.+.+.+++.||++++++.|++++.+ ++ ..
T Consensus       174 ~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~-~~  249 (467)
T 1zk7_A          174 TIPERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFR--EDPAIGEAVTAAFRAEGIEVLEHTQASQVAHM-DG-EF  249 (467)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT--SCHHHHHHHHHHHHHTTCEEETTCCEEEEEEE-TT-EE
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCC--CCHHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CC-EE
Confidence            4689999999999999999999999999999999999987  79999999999999999999999999999854 22 33


Q ss_pred             EEEeCCCcEEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHH
Q 014997          211 AVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVD  287 (414)
Q Consensus       211 ~v~~~~g~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~  287 (414)
                      .+.++ +.++++|.||+|+|.+|++++  +++.+++.+ +|+|.||++++|+.|+|||+|||+..+.          .+.
T Consensus       250 ~v~~~-~~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~----------~~~  318 (467)
T 1zk7_A          250 VLTTT-HGELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQGMRTSNPNIYAAGDCTDQPQ----------FVY  318 (467)
T ss_dssp             EEEET-TEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTCBCSSTTEEECSTTBSSCC----------CHH
T ss_pred             EEEEC-CcEEEcCEEEECCCCCcCCCcCCchhcCCcCCCCCCEEECCCcccCCCCEEEEeccCCCcc----------cHH
Confidence            56666 457999999999999999875  578888875 5679999999999999999999998643          466


Q ss_pred             HHHHHHHHHHHHHhcCCC-CCCCCCCceeeeccCCCCCCcceeeeEeecCCC-------cEEE-E-----------cCCC
Q 014997          288 HARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETIE-I-----------GNFD  347 (414)
Q Consensus       288 ~A~~~a~~aa~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~~~-~-----------~~~~  347 (414)
                      .|..||+.+|.||++... ..+..+|++  ..++.       .+..+|....       +... .           ....
T Consensus       319 ~A~~~g~~aa~~i~~~~~~~~~~~~p~~--~~~~~-------~~a~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~  389 (467)
T 1zk7_A          319 VAAAAGTRAAINMTGGDAALDLTAMPAV--VFTDP-------QVATVGYSEAEAHHDGIETDSRTLTLDNVPRALANFDT  389 (467)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCCCTTCEEE--ECSSS-------EEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHcCCCcccCCCCCCEE--EecCC-------ceEEEecCHHHHHhcCCCeEEEEEecccchhhhhcCCC
Confidence            799999999999997532 234445653  22221       2455664422       1111 0           0112


Q ss_pred             CcEEEEEEe--CCEEEEEEeecCChHHh-hHHHHHHhCCCCCCh-hh-hcCCCcHHHHHHHHhcCCC
Q 014997          348 PKIATFWID--SGKLKGVLVESGSPEEF-QLLPTLARSQPFVDK-AK-LQQASSVEEALEIARAALP  409 (414)
Q Consensus       348 ~~~~~~~~~--~~~~~g~~~~~~~~~~~-~~~~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~  409 (414)
                      ..+.+++++  +++|+|++++...+.++ ..+..+|+.+.+++. .. ...+|++.|++.+|+..+.
T Consensus       390 ~~~~kl~~~~~~~~ilG~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~~~~  456 (467)
T 1zk7_A          390 RGFIKLVIEEGSHRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVEGLKLAAQTFN  456 (467)
T ss_dssp             CCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTSTTHHHHHHHHTTT
T ss_pred             cEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHHHHHHHHHHHh
Confidence            347788886  69999999866666554 456778899998887 23 6899999999999987654

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.1e-37  Score=308.53  Aligned_cols=323  Identities=20%  Similarity=0.237  Sum_probs=242.0

Q ss_pred             HHHHcCCeEEcCCcEEEEeCCCCEEEeCCCc--EEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcC
Q 014997           55 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK  132 (414)
Q Consensus        55 ~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~--~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~  132 (414)
                      ++++.+++++.+ +++.+++....|.+.+|+  ++.||+||||||++|..++.++|.+  .   ..+..   .+......
T Consensus       114 ~~~~~gv~~~~g-~~~~i~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~~i~g~~--~---~~~~~---~~~~l~~~  184 (479)
T 2hqm_A          114 NLEKEKVDVVFG-WARFNKDGNVEVQKRDNTTEVYSANHILVATGGKAIFPENIPGFE--L---GTDSD---GFFRLEEQ  184 (479)
T ss_dssp             HHHHTTEEEEEE-EEEECTTSCEEEEESSSCCEEEEEEEEEECCCEEECCCTTSTTGG--G---SBCHH---HHHHCSSC
T ss_pred             HHHhCCCEEEEe-EEEEeeCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCCCCCCCCcc--c---ccchH---HHhccccc
Confidence            455789999987 577787766677777776  7999999999999986431444431  1   22223   33333346


Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEE
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV  212 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v  212 (414)
                      +++++|||+|++|+|+|..|+++|.+|+++++.+++++ .+++++.+.+.+.+++.||++++++.|++++.++++....+
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~-~~d~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v  263 (479)
T 2hqm_A          185 PKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLR-KFDECIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKI  263 (479)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCT-TSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECC-CCCEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCcccc-ccCHHHHHHHHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEE
Confidence            79999999999999999999999999999999999987 58999999999999999999999999999986544534567


Q ss_pred             EeCCC-cEEecCEEEEccCCcCCChh-hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHH
Q 014997          213 KLEDG-STIDADTIVIGIGAKPTVSP-FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHA  289 (414)
Q Consensus       213 ~~~~g-~~i~~D~vi~a~G~~p~~~~-l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A  289 (414)
                      .+++| +++++|.||+|+|++|++.+ ++++|++.+ +|+|.||++++|+.|+|||+|||+..+          ..+..|
T Consensus       264 ~~~~G~~~i~~D~vv~a~G~~p~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~----------~~~~~A  333 (479)
T 2hqm_A          264 HMNDSKSIDDVDELIWTIGRKSHLGMGSENVGIKLNSHDQIIADEYQNTNVPNIYSLGDVVGKV----------ELTPVA  333 (479)
T ss_dssp             EETTSCEEEEESEEEECSCEEECCCSSGGGGTCCBCTTSCBCCCTTCBCSSTTEEECGGGTTSS----------CCHHHH
T ss_pred             EECCCcEEEEcCEEEECCCCCCccccChhhcCceECCCCCEeECCCCccCCCCEEEEEecCCCc----------ccHHHH
Confidence            88899 78999999999999999876 788899875 678999999999999999999997642          256789


Q ss_pred             HHHHHHHHHHHhcCC---C--CCCCCCCceeeeccCCCCCCcceeeeEeecCCCc---------EEEE------------
Q 014997          290 RQSAQHCIKALLSAQ---T--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE---------TIEI------------  343 (414)
Q Consensus       290 ~~~a~~aa~~i~~~~---~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~---------~~~~------------  343 (414)
                      ..||+.+|.||++..   .  ..|..+|+.   .|..+      .+..+|....+         ....            
T Consensus       334 ~~~g~~aa~~i~~~~~~~~~~~~~~~~p~~---~~~~~------~~~~vGl~e~~a~~~~~~~~~~~~~~~~~~~~~~~~  404 (479)
T 2hqm_A          334 IAAGRKLSNRLFGPEKFRNDKLDYENVPSV---IFSHP------EAGSIGISEKEAIEKYGKENIKVYNSKFTAMYYAML  404 (479)
T ss_dssp             HHHHHHHHHHHHSCGGGTTCCCCCTTCCEE---ECCSS------CEEEEECCHHHHHHHHCGGGEEEEEEEECCGGGGGC
T ss_pred             HHHHHHHHHHhcCCCccCcccCCCCCCCeE---EECCC------CeEEEeCCHHHHHhcCCCCcEEEEEEeccHHHHHhh
Confidence            999999999999643   2  234456652   23211      13444533210         1110            


Q ss_pred             cCCCCcEEEEEEe--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCCh-hh-hcCCCcHHHHHHHHhc
Q 014997          344 GNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDK-AK-LQQASSVEEALEIARA  406 (414)
Q Consensus       344 ~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~  406 (414)
                      .+...-+.++.++  +++|+|+++++..+.++... ..+|+.+.+++. .. +..||++.|++.+++.
T Consensus       405 ~~~~~~~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~  472 (479)
T 2hqm_A          405 SEKSPTRYKIVCAGPNEKVVGLHIVGDSSAEILQGFGVAIKMGATKADFDNCVAIHPTSAEELVTMRG  472 (479)
T ss_dssp             SSCCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGSCC-
T ss_pred             cCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCChHHHHHHHHH
Confidence            0112336777775  59999999876667766544 446788888877 22 7899999999876543

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=100.00  E-value=8.3e-37  Score=308.32  Aligned_cols=324  Identities=19%  Similarity=0.259  Sum_probs=240.4

Q ss_pred             hHHHHcCCeEEcCCcEEEEeCCCCEEEeCCC------------cEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHH
Q 014997           54 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSG------------KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVA  121 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g------------~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~  121 (414)
                      .++++.+++++.++.+. ++.....|.+.+|            .++.||+||+|||++|..++.++ .+ ..++   +..
T Consensus       103 ~~~~~~gv~~~~g~~~~-~~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtGs~p~~~~~i~-~~-~~v~---~~~  176 (482)
T 1ojt_A          103 GMAKSRKVDVIQGDGQF-LDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVTKLPFIP-ED-PRII---DSS  176 (482)
T ss_dssp             HHHHHTTCEEEEEEEEE-EETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCEEECCCSSCC-CC-TTEE---CHH
T ss_pred             HHHHhCCcEEEeeEEEE-ccCCEEEEEecCCcccccccccCcceEEEcCEEEECCCCCCCCCCCCC-cc-CcEE---cHH
Confidence            45667899999986443 5554334444456            67999999999999987544233 22 2333   334


Q ss_pred             HHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEE
Q 014997          122 DADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNL  201 (414)
Q Consensus       122 ~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i  201 (414)
                      ++..   ....+++++|||||++|+|+|..|+++|.+||++++.+++++ .+++++.+.+.+.+++.||++++++.|+++
T Consensus       177 ~~~~---~~~~~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i  252 (482)
T 1ojt_A          177 GALA---LKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQ-GADRDLVKVWQKQNEYRFDNIMVNTKTVAV  252 (482)
T ss_dssp             HHTT---CCCCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSST-TSCHHHHHHHHHHHGGGEEEEECSCEEEEE
T ss_pred             HHhc---ccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccc-ccCHHHHHHHHHHHHhcCCEEEECCEEEEE
Confidence            3322   223579999999999999999999999999999999999998 589999999999999999999999999999


Q ss_pred             EecCCCcEEEEEeCC----CcEEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCC
Q 014997          202 EAGSDGRVAAVKLED----GSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPL  274 (414)
Q Consensus       202 ~~~~~~~~~~v~~~~----g~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~  274 (414)
                      +.++++  ..+.+.+    |+++++|.||+|+|++||+++  ++++|++.+ +|+|.||+++||+.|+|||+|||+..+.
T Consensus       253 ~~~~~~--~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~  330 (482)
T 1ojt_A          253 EPKEDG--VYVTFEGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPM  330 (482)
T ss_dssp             EEETTE--EEEEEESSSCCSSCEEESCEEECCCEEECGGGTTGGGTTCCCCTTSCCCCCTTSBCSSTTEEECGGGTCSSC
T ss_pred             EEcCCe--EEEEEeccCCCceEEEcCEEEECcCCCcCCCCCChhhcCceeCCCCCEeeCCCcccCCCCEEEEEcccCCCc
Confidence            864332  3566666    778999999999999999987  688898876 4779999999999999999999997532


Q ss_pred             ccCCcccccccHHHHHHHHHHHHHHHhcCCCCC--CCCCCceeeeccCCCCCCcceeeeEeecCCC-------cEEE--E
Q 014997          275 KMYDRTARVEHVDHARQSAQHCIKALLSAQTHT--YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETIE--I  343 (414)
Q Consensus       275 ~~~~~~~~~~~~~~A~~~a~~aa~~i~~~~~~~--~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~~~--~  343 (414)
                                .+..|..||+.+|.||++.. .+  +..+|++  ..++..       +..+|....       +...  .
T Consensus       331 ----------l~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~--~~~~~~-------~a~vG~te~~a~~~g~~~~~~~~  390 (482)
T 1ojt_A          331 ----------LAHKAVHEGHVAAENCAGHK-AYFDARVIPGV--AYTSPE-------VAWVGETELSAKASARKITKANF  390 (482)
T ss_dssp             ----------CHHHHHHHHHHHHHHHTTCC-CCCCCCCCCEE--ECSSSC-------EEEEECCHHHHHHHTCCEEEEEE
T ss_pred             ----------cHHHHHHHHHHHHHHHcCCC-ccCCCCCCCEE--EEcCCC-------eEEEeCCHHHHHhcCCCEEEEEE
Confidence                      46679999999999999743 33  3445643  222211       445554321       1111  0


Q ss_pred             ----------cCCCCcEEEEEEe--CCEEEEEEeecCChHHhh-HHHHHHhCCCCCChh-h-hcCCCcHHHHHHHHhcCC
Q 014997          344 ----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQ-LLPTLARSQPFVDKA-K-LQQASSVEEALEIARAAL  408 (414)
Q Consensus       344 ----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~-~~~~l~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~  408 (414)
                                .+....|.+++++  +++|+|++++...+.++. .+..+|+.+.+++.- . +..||+++|++.+|++.+
T Consensus       391 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~a~~~~  470 (482)
T 1ojt_A          391 PWAASGRAIANGCDKPFTKLIFDAETGRIIGGGIVGPNGGDMIGEVCLAIEMGCDAADIGKTIHPHPTLGESIGMAAEVA  470 (482)
T ss_dssp             EGGGCHHHHHTTCCSCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSSSTTHHHHHHHHH
T ss_pred             EcCcchHHhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHHHHHHHHHHH
Confidence                      0112347788884  699999998666666554 455678999888872 2 789999999999998654


Q ss_pred             C
Q 014997          409 P  409 (414)
Q Consensus       409 ~  409 (414)
                      .
T Consensus       471 ~  471 (482)
T 1ojt_A          471 L  471 (482)
T ss_dssp             H
T ss_pred             h
Confidence            3

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=100.00  E-value=4.5e-36  Score=303.64  Aligned_cols=318  Identities=20%  Similarity=0.297  Sum_probs=240.8

Q ss_pred             HHHc-CCeEEcCCcEEEEeCCCCEEEeC---C-----CcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHH
Q 014997           56 YKEK-GIEMIYQDPVTSIDIEKQTLITN---S-----GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADAL  126 (414)
Q Consensus        56 ~~~~-~i~~~~~~~V~~id~~~~~V~~~---~-----g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~  126 (414)
                      +++. +|+++.+ +++.++.  ++|.++   +     ++++.||+||||||++|+. |.++|.  +.+.+      +..+
T Consensus       117 l~~~~gv~~~~g-~~~~i~~--~~v~v~~~~~~~~~~~~~~~~d~lViATGs~p~~-p~i~G~--~~~~~------~~~~  184 (495)
T 2wpf_A          117 FNDTEGLDFFLG-WGSLESK--NVVVVRETADPKSAVKERLQADHILLATGSWPQM-PAIPGI--EHCIS------SNEA  184 (495)
T ss_dssp             HHHCTTEEEEES-EEEEEET--TEEEEESSSSTTSCEEEEEEEEEEEECCCEEECC-CCCTTG--GGCEE------HHHH
T ss_pred             HhcCCCeEEEEe-EEEEeeC--CEEEEeecCCccCCCCeEEEcCEEEEeCCCCcCC-CCCCCc--ccccc------HHHH
Confidence            4567 9999997 5777764  677775   4     6789999999999999874 445553  22322      2233


Q ss_pred             HHhhcCCCeEEEECCChHHHHHHHHHHhC---CCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEe
Q 014997          127 ISSLEKAKKVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  203 (414)
Q Consensus       127 ~~~~~~~~~vvVvGgG~~g~e~A~~l~~~---g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~  203 (414)
                      ......+++++|||+|++|+|+|..|+++   |.+||++++.+++++ .+++++.+.+.+.+++.||++++++.|+++..
T Consensus       185 ~~~~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~-~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~  263 (495)
T 2wpf_A          185 FYLPEPPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILR-GFDETIREEVTKQLTANGIEIMTNENPAKVSL  263 (495)
T ss_dssp             TTCSSCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCT-TSCHHHHHHHHHHHHHTTCEEEESCCEEEEEE
T ss_pred             HhhhhcCCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCcccc-ccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEE
Confidence            22234578999999999999999999999   999999999999987 58999999999999999999999999999986


Q ss_pred             cCCCcEEEEEeCCCcEEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcc
Q 014997          204 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRT  280 (414)
Q Consensus       204 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~  280 (414)
                      ++++. ..+.+.+|++++||.||+|+|++|++++  ++++|+..+ +|+|.||+++||+.|+|||+|||+..+       
T Consensus       264 ~~~~~-~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~-------  335 (495)
T 2wpf_A          264 NTDGS-KHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTNVPNIYAIGDITDRL-------  335 (495)
T ss_dssp             CTTSC-EEEEETTSCEEEESEEEECSCEEECCGGGTGGGTTCCBCTTSSBCCCTTCBCSSTTEEECGGGGCSC-------
T ss_pred             cCCce-EEEEECCCcEEEcCEEEECCCCcccccccchhhcCccCCCCCCEEECCCCccCCCCEEEEeccCCCc-------
Confidence            54333 4678889989999999999999999974  678898876 678999999999999999999999632       


Q ss_pred             cccccHHHHHHHHHHHHHHHhcCCC--CCCCCCCceeeeccCCCCCCcceeeeEeecCCCc-------EEE-E-------
Q 014997          281 ARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TIE-I-------  343 (414)
Q Consensus       281 ~~~~~~~~A~~~a~~aa~~i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~~~-~-------  343 (414)
                         ..+..|..||+.+|.||++...  ..|..+|+   ..|..+      .+..+|....+       ... .       
T Consensus       336 ---~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~---~~~~~~------~~a~vGl~e~~a~~~~~~~~v~~~~~~~~~  403 (495)
T 2wpf_A          336 ---MLTPVAINEGAALVDTVFGNKPRKTDHTRVAS---AVFSIP------PIGTCGLIEEVAAKEFEKVAVYMSSFTPLM  403 (495)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHSSCCCCCCCSSCEE---EECCSS------CEEEEECCHHHHHHHSSEEEEEEEEECCTH
T ss_pred             ---cCHHHHHHHHHHHHHHhcCCCCCcCCCCCCCE---EEECCC------CeEEEeCCHHHHHhcCCCEEEEEEecCchh
Confidence               2577799999999999997433  23444554   233221      14556654321       111 1       


Q ss_pred             ----cCCCCcE-EEEEEe--CCEEEEEEeecCChHHhhH-HHHHHhCCCCCCh-hh-hcCCCcHHHHHHHHhc
Q 014997          344 ----GNFDPKI-ATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK-AK-LQQASSVEEALEIARA  406 (414)
Q Consensus       344 ----~~~~~~~-~~~~~~--~~~~~g~~~~~~~~~~~~~-~~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~  406 (414)
                          +....-| .++.++  +++|+|++++...+.++.. +..+|+.+.+++. .. +..||++.|++.+++.
T Consensus       404 ~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~  476 (495)
T 2wpf_A          404 HNISGSKYKKFVAKIVTNHSDGTVLGVHLLGDGAPEIIQAVGVCLRLNAKISDFYNTIGVHPTSAEELCSMRT  476 (495)
T ss_dssp             HHHHSCTTCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCSGGGGGSCCS
T ss_pred             hhhhcCCCcEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHHHHH
Confidence                1112347 787776  6999999997777766554 4556788888877 23 7899999999887653

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=100.00  E-value=1.3e-35  Score=298.17  Aligned_cols=322  Identities=21%  Similarity=0.305  Sum_probs=241.3

Q ss_pred             hHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCC
Q 014997           54 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA  133 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~  133 (414)
                      +++++.+|+++.++ +..++.  ++|.+. |+++.||+||||||++|+.+|.+++.  ..++   +..+...+..  ..+
T Consensus       101 ~~~~~~gv~~~~g~-~~~~~~--~~v~v~-g~~~~~d~lViATGs~p~~p~gi~~~--~~v~---~~~~~~~l~~--~~~  169 (464)
T 2eq6_A          101 TLLKGNGVELLRGF-ARLVGP--KEVEVG-GERYGAKSLILATGSEPLELKGFPFG--EDVW---DSTRALKVEE--GLP  169 (464)
T ss_dssp             HHHHHTTCEEEESC-EEEEET--TEEEET-TEEEEEEEEEECCCEEECCBTTBCCS--SSEE---CHHHHTCGGG--CCC
T ss_pred             HHHHhCCCEEEeee-EEEccC--CEEEEc-cEEEEeCEEEEcCCCCCCCCCCCCCC--CcEE---cHHHHHhhhh--hcC
Confidence            45677899999975 444654  678777 77899999999999998754323331  2333   3444333221  157


Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEE
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK  213 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~  213 (414)
                      ++++|||+|++|+|+|..|+++|.+|+++++.+++++ .+++++.+.+.+.+++.||++++++.|++++.+++ . ..+.
T Consensus       170 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~-~-~~v~  246 (464)
T 2eq6_A          170 KRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILP-QGDPETAALLRRALEKEGIRVRTKTKAVGYEKKKD-G-LHVR  246 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETT-E-EEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCcccc-ccCHHHHHHHHHHHHhcCCEEEcCCEEEEEEEeCC-E-EEEE
Confidence            9999999999999999999999999999999999987 58999999999999999999999999999986432 2 2456


Q ss_pred             eC-C--Cc--EEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCccccccc
Q 014997          214 LE-D--GS--TIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEH  285 (414)
Q Consensus       214 ~~-~--g~--~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~  285 (414)
                      +. +  |+  ++++|.||+|+|.+|++++  ++++|+..+ +|+|.||+++||+.|+|||+|||+..+.          .
T Consensus       247 ~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~~~----------l  316 (464)
T 2eq6_A          247 LEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDERGFIRVNARMETSVPGVYAIGDAARPPL----------L  316 (464)
T ss_dssp             EEETTCCSCEEEEESEEEECSCEEESCTTSSHHHHTCCBCTTSCBCCCTTCBCSSTTEEECGGGTCSSC----------C
T ss_pred             EeecCCCceeEEEcCEEEECCCcccCCCCCChhhcCceecCCCCEEECCCcccCCCCEEEEeccCCCcc----------c
Confidence            65 5  76  8999999999999999886  578888874 5779999999999999999999997532          4


Q ss_pred             HHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeeccCCCCCCcceeeeEeecCCC-------cEEE-------------Ec
Q 014997          286 VDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETIE-------------IG  344 (414)
Q Consensus       286 ~~~A~~~a~~aa~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~~~-------------~~  344 (414)
                      +..|..||+.+|+||++... ..+. +|++   .|..+      .+..+|....       +...             .+
T Consensus       317 ~~~A~~~g~~aa~~i~g~~~~~~~~-~p~~---~~~~~------~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~  386 (464)
T 2eq6_A          317 AHKAMREGLIAAENAAGKDSAFDYQ-VPSV---VYTSP------EWAGVGLTEEEAKRAGYKVKVGKFPLAASGRALTLG  386 (464)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCCCC-CCEE---ECSSS------EEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTS
T ss_pred             HHHHHHHHHHHHHHhcCCCcccCCC-CCeE---EECCC------CEEEEeCCHHHHHhcCCCEEEEEEEcCcchhhhhcC
Confidence            56799999999999997432 1344 6653   22211      1455554322       1111             11


Q ss_pred             CCCCcEEEEEEe--CCEEEEEEeecCChHHh-hHHHHHHhCCCCCCh--hhhcCCCcHHHHHHHHhcCCCc
Q 014997          345 NFDPKIATFWID--SGKLKGVLVESGSPEEF-QLLPTLARSQPFVDK--AKLQQASSVEEALEIARAALPV  410 (414)
Q Consensus       345 ~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~-~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  410 (414)
                      + ...+.+++++  +++|+|++++...+.++ ..+..+|+.+.+++.  ..+..||++.|++.++++.+..
T Consensus       387 ~-~~g~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~~  456 (464)
T 2eq6_A          387 G-AEGMVKVVGDEETDLLLGVFIVGPQAGELIAEAALALEMGATLTDLALTVHPHPTLSESLMEAAEAFHK  456 (464)
T ss_dssp             C-CCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCTTHHHHHHHHHHTT
T ss_pred             C-CcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHHHHHhc
Confidence            1 2347788776  69999999877766665 556667899998887  2378899999999999876543

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=100.00  E-value=6.3e-36  Score=299.26  Aligned_cols=315  Identities=20%  Similarity=0.245  Sum_probs=236.9

Q ss_pred             HHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCC
Q 014997           55 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK  134 (414)
Q Consensus        55 ~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~  134 (414)
                      .+++.+++++.+ +++.+++  ++|.+ +|+++.||+||||||++|.. |.++|.+  .   ..+..+..   .....++
T Consensus       102 ~~~~~~v~~~~g-~~~~i~~--~~v~~-~g~~~~~d~lviAtGs~p~~-p~i~g~~--~---~~~~~~~~---~~~~~~~  168 (450)
T 1ges_A          102 VLGKNNVDVIKG-FARFVDA--KTLEV-NGETITADHILIATGGRPSH-PDIPGVE--Y---GIDSDGFF---ALPALPE  168 (450)
T ss_dssp             HHHHTTCEEEES-CCEEEET--TEEEE-TTEEEEEEEEEECCCEEECC-CCSTTGG--G---SBCHHHHH---HCSSCCS
T ss_pred             HHHhCCCEEEEe-EEEEecC--CEEEE-CCEEEEeCEEEECCCCCCCC-CCCCCcc--c---eecHHHhh---hhhhcCC
Confidence            346789999997 5666765  57777 67889999999999999864 4444431  1   23333333   3234579


Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEe
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL  214 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~  214 (414)
                      +++|||+|++|+|+|..|+++|.+|+++++.+++++ .+++++.+.+.+.+++.||++++++.|++++.++++. ..+.+
T Consensus       169 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~-~~v~~  246 (450)
T 1ges_A          169 RVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP-SFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGS-LTLEL  246 (450)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSC-EEEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhh-hhhHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCcE-EEEEE
Confidence            999999999999999999999999999999999887 5899999999999999999999999999998654443 36788


Q ss_pred             CCCcEEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHH
Q 014997          215 EDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ  291 (414)
Q Consensus       215 ~~g~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~  291 (414)
                      .+|+++++|.||+|+|++|++++  ++++|++.+ +|+|.||+++||+.|+|||+|||+..+          ..+..|..
T Consensus       247 ~~g~~i~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~----------~~~~~A~~  316 (450)
T 1ges_A          247 EDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAV----------ELTPVAVA  316 (450)
T ss_dssp             TTSCEEEESEEEECSCEEESCTTSCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECSGGGTSC----------CCHHHHHH
T ss_pred             CCCcEEEcCEEEECCCCCcCCCCCCchhcCceECCCCCEeECCCCccCCCCEEEEeccCCCC----------ccHHHHHH
Confidence            89989999999999999999873  678898875 677999999999999999999998642          25677999


Q ss_pred             HHHHHHHHHhcCCC---CCCCCCCceeeeccCCCCCCcceeeeEeecCCC---------cEEEE------------cCCC
Q 014997          292 SAQHCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG---------ETIEI------------GNFD  347 (414)
Q Consensus       292 ~a~~aa~~i~~~~~---~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~---------~~~~~------------~~~~  347 (414)
                      ||+.+|.||++...   ..|..+|+.   .|..+      .+..+|....         .....            ....
T Consensus       317 ~g~~aa~~i~~~~~~~~~~~~~~p~~---~~~~~------~~a~vG~~e~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~  387 (450)
T 1ges_A          317 AGRRLSERLFNNKPDEHLDYSNIPTV---VFSHP------PIGTVGLTEPQAREQYGDDQVKVYKSSFTAMYTAVTTHRQ  387 (450)
T ss_dssp             HHHHHHHHHHTTCTTCCCCCSSCCEE---ECCSS------CEEEEECCHHHHHHHHCGGGEEEEEEEEECHHHHTSSSCC
T ss_pred             HHHHHHHHHcCCCCcccCCCCCCCeE---EECCC------ceEEEeCCHHHHHhcCCCCcEEEEEEECchhhHHHhcCCC
Confidence            99999999997432   235556653   23221      1344553311         11110            1112


Q ss_pred             CcEEEEEEe--CCEEEEEEeecCChHHhhHHH-HHHhCCCCCCh-hh-hcCCCcHHHHHHH
Q 014997          348 PKIATFWID--SGKLKGVLVESGSPEEFQLLP-TLARSQPFVDK-AK-LQQASSVEEALEI  403 (414)
Q Consensus       348 ~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~-~l~~~~~~~~~-~~-~~~~~~~~~~~~~  403 (414)
                      ..|.++.++  +++|+|++++...+.++...- .+|+.+.+++. .. +..||+++|++.+
T Consensus       388 ~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~  448 (450)
T 1ges_A          388 PCRMKLVCVGSEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAEEFVT  448 (450)
T ss_dssp             EEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGS
T ss_pred             cEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCChHHHHHh
Confidence            236677765  699999999766677765544 45788888887 33 7899999998764

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=3.7e-36  Score=304.83  Aligned_cols=328  Identities=16%  Similarity=0.228  Sum_probs=230.8

Q ss_pred             hHHHHcCCeEEcCCcEEEEeCCCCEEEeCC-------------CcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCH
Q 014997           54 EWYKEKGIEMIYQDPVTSIDIEKQTLITNS-------------GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDV  120 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~~id~~~~~V~~~~-------------g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~  120 (414)
                      +++++.+|+++.++ +..+++  +.|.+.+             ++++.||+||||||++|.. |.++|.  +.+.+   .
T Consensus        97 ~~~~~~gv~~~~g~-~~~id~--~~v~v~~~~~~~~~~~~~~~~~~~~~d~lViAtGs~p~~-p~i~G~--~~~~~---~  167 (500)
T 1onf_A           97 QNLSKDKVDLYEGT-ASFLSE--NRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVF-PPVKGI--ENTIS---S  167 (500)
T ss_dssp             HHHHHTTCEEEESC-CCCC----------------------------CBSSEEECCCCCBCC-CSCTTG--GGCEE---H
T ss_pred             HHHHhCCCEEEEeE-EEEeeC--CEEEEEeccccccccccCCCceEEEeCEEEECCCCCCCC-CCCCCC--CcccC---H
Confidence            34567899999874 444554  4555543             6679999999999999864 545553  22222   2


Q ss_pred             HHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEE
Q 014997          121 ADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKN  200 (414)
Q Consensus       121 ~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~  200 (414)
                      .+   +.. +..+++++|||+|++|+|+|..|+++|.+||++++.+++++ .+++++.+.+.+.+++.||++++++.|++
T Consensus       168 ~~---~~~-~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~-~~d~~~~~~l~~~l~~~gv~i~~~~~v~~  242 (500)
T 1onf_A          168 DE---FFN-IKESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR-KFDESVINVLENDMKKNNINIVTFADVVE  242 (500)
T ss_dssp             HH---HTT-CCCCSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCT-TSCHHHHHHHHHHHHHTTCEEECSCCEEE
T ss_pred             HH---Hhc-cCCCCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCc-ccchhhHHHHHHHHHhCCCEEEECCEEEE
Confidence            22   222 22389999999999999999999999999999999999997 58999999999999999999999999999


Q ss_pred             EEecCCCcEEEEEeCCCcE-EecCEEEEccCCcCCCh-h-hhhcCCcccCCCEEEcCCCCCCCCcEEEEccccccCCcc-
Q 014997          201 LEAGSDGRVAAVKLEDGST-IDADTIVIGIGAKPTVS-P-FERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKM-  276 (414)
Q Consensus       201 i~~~~~~~~~~v~~~~g~~-i~~D~vi~a~G~~p~~~-~-l~~~gl~~~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~-  276 (414)
                      ++.++++. ..+.+++|++ ++||.||+|+|++|+++ + ++++|++.++|+|.||+++||+.|+|||+|||+..+... 
T Consensus       243 i~~~~~~~-~~v~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~  321 (500)
T 1onf_A          243 IKKVSDKN-LSIHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVETNNNYIVVDENQRTSVNNIYAVGDCCMVKKSKE  321 (500)
T ss_dssp             EEESSTTC-EEEEETTSCEEEEESEEEECCCBCCTTTTSSCTTTTCCBSSSCEEECTTCBCSSSSEEECSTTEEEC----
T ss_pred             EEEcCCce-EEEEECCCcEEEECCEEEECCCCCcCCCCCCchhcCccccCCEEEECCCcccCCCCEEEEecccccccccc
Confidence            98654443 3678889988 99999999999999986 4 688888876678999999999999999999999532110 


Q ss_pred             ----------------------CC-cccccccHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeeeccCCCCCCcceeee
Q 014997          277 ----------------------YD-RTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQ  331 (414)
Q Consensus       277 ----------------------~~-~~~~~~~~~~A~~~a~~aa~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~  331 (414)
                                            .+ ...+...+..|..||+.+|+||++....  .|..+|+.   .|...      .+.
T Consensus       322 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~---~~~~~------~~a  392 (500)
T 1onf_A          322 IEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAINAGRLLADRLFLKKTRKTNYKLIPTV---IFSHP------PIG  392 (500)
T ss_dssp             --------------------------CBCCCCHHHHHHHHHHHHHHHHSCTTCCCCCSSCCEE---ECCSS------CEE
T ss_pred             ccccccccccccccccccccccccccCCcccchhHHHHHHHHHHHHHhCCCCccCCCCCCCeE---EEcCc------ceE
Confidence                                  00 0023457889999999999999974332  35556653   23211      134


Q ss_pred             EeecCCC---------cEEE----------------EcCCCCcEEEEEEe--CCEEEEEEeecCChHHhhHH-HHHHhCC
Q 014997          332 FFGDNVG---------ETIE----------------IGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQ  383 (414)
Q Consensus       332 ~~G~~~~---------~~~~----------------~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~l~~~~  383 (414)
                      .+|....         ....                ......-+.++.++  +++|+|++++...+.++... ..+|+.+
T Consensus       393 ~vGl~e~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~  472 (500)
T 1onf_A          393 TIGLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYLKLVCVGKDELIKGLHIIGLNADEIVQGFAVALKMN  472 (500)
T ss_dssp             EEECCHHHHHHHTCGGGEEEEEEEECCGGGTTSCSCGGGSCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTT
T ss_pred             EEeCCHHHHHhcCCCccEEEEEEECchhhhhhccccccCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcC
Confidence            4443311         1110                01112336777774  69999999866667665544 4457888


Q ss_pred             CCCCh-hh-hcCCCcHHHHHHHHh
Q 014997          384 PFVDK-AK-LQQASSVEEALEIAR  405 (414)
Q Consensus       384 ~~~~~-~~-~~~~~~~~~~~~~~~  405 (414)
                      .+++. .. +..||++.|++..++
T Consensus       473 ~t~~~l~~~~~~~Pt~~e~~~~~~  496 (500)
T 1onf_A          473 ATKKDFDETIPIHPTAAEEFLTLQ  496 (500)
T ss_dssp             CBHHHHHTSCCCTTCSTTHHHHCC
T ss_pred             CCHHHHhccccCCCCHHHHHHHhc
Confidence            88877 22 789999999998765

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=100.00  E-value=5.1e-36  Score=302.97  Aligned_cols=318  Identities=19%  Similarity=0.262  Sum_probs=241.0

Q ss_pred             HHHc-CCeEEcCCcEEEEeCCCCEEEe-----CCC---cEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHH
Q 014997           56 YKEK-GIEMIYQDPVTSIDIEKQTLIT-----NSG---KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADAL  126 (414)
Q Consensus        56 ~~~~-~i~~~~~~~V~~id~~~~~V~~-----~~g---~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~  126 (414)
                      +++. +|+++.+ +++.+++  +++.+     .+|   +.+.||+||||||++|.. |.++|.  +.   +.+..+.   
T Consensus       113 l~~~~gv~~~~g-~~~~i~~--~~v~v~~~~~~~g~~~~~~~~d~lviAtGs~p~~-p~i~g~--~~---~~~~~~~---  180 (490)
T 1fec_A          113 FADTEGLTFHQG-FGALQDN--HTVLVRESADPNSAVLETLDTEYILLATGSWPQH-LGIEGD--DL---CITSNEA---  180 (490)
T ss_dssp             HHTSTTEEEEES-EEEEEET--TEEEEESSSSTTSCEEEEEEEEEEEECCCEEECC-CCSBTG--GG---CBCHHHH---
T ss_pred             HhcCCCcEEEEe-EEEEeeC--CEEEEEeeccCCCCceEEEEcCEEEEeCCCCCCC-CCCCCc--cc---eecHHHH---
Confidence            4567 9999997 5778876  45555     366   689999999999999874 444543  22   2233333   


Q ss_pred             HHhhcCCCeEEEECCChHHHHHHHHHHhC---CCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEe
Q 014997          127 ISSLEKAKKVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  203 (414)
Q Consensus       127 ~~~~~~~~~vvVvGgG~~g~e~A~~l~~~---g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~  203 (414)
                      ......+++++|||+|++|+|+|..|+++   |.+|+++++.+++++ .+++++.+.+.+.+++.||++++++.|++++.
T Consensus       181 ~~~~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~-~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~  259 (490)
T 1fec_A          181 FYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILR-GFDSELRKQLTEQLRANGINVRTHENPAKVTK  259 (490)
T ss_dssp             TTCSSCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSST-TSCHHHHHHHHHHHHHTTEEEEETCCEEEEEE
T ss_pred             hhhhhcCCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCccc-ccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEE
Confidence            22234578999999999999999999999   999999999999987 58999999999999999999999999999986


Q ss_pred             cCCCcEEEEEeCCCcEEecCEEEEccCCcCCCh-h-hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcc
Q 014997          204 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS-P-FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRT  280 (414)
Q Consensus       204 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~-~-l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~  280 (414)
                      ++++. ..+.+.+|+++++|.||+|+|.+|+++ + ++++|+..+ +|+|.||+++||+.|+|||+|||+..+       
T Consensus       260 ~~~~~-~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~I~Vd~~~~t~~~~IyA~GD~~~~~-------  331 (490)
T 1fec_A          260 NADGT-RHVVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRV-------  331 (490)
T ss_dssp             CTTSC-EEEEETTSCEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTCBCSSTTEEECGGGGCSC-------
T ss_pred             cCCCE-EEEEECCCcEEEcCEEEEccCCCcCccccCchhcCccCCCCCCEEECCCCccCCCCEEEEeccCCCc-------
Confidence            54333 367888998999999999999999987 4 688899876 678999999999999999999999632       


Q ss_pred             cccccHHHHHHHHHHHHHHHhcCCC--CCCCCCCceeeeccCCCCCCcceeeeEeecCCCc-------EEE-E-------
Q 014997          281 ARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TIE-I-------  343 (414)
Q Consensus       281 ~~~~~~~~A~~~a~~aa~~i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~~~-~-------  343 (414)
                         ..+..|..||+.+|.||++...  ..|..+|+.   .|..+      .+..+|....+       ... .       
T Consensus       332 ---~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~---~~~~~------~~a~vG~~e~~a~~~~~~~~~~~~~~~~~~  399 (490)
T 1fec_A          332 ---MLTPVAINEGAAFVDTVFANKPRATDHTKVACA---VFSIP------PMGVCGYVEEDAAKKYDQVAVYESSFTPLM  399 (490)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHSSCCCCCCCSSCCEE---ECCSS------CEEEEECCHHHHHHHCSEEEEEEEEECCHH
T ss_pred             ---cCHHHHHHHHHHHHHHhcCCCCCcCCCCCccEE---EECCC------CeEEEeCCHHHHHhcCCCEEEEEeecChhh
Confidence               2577899999999999997433  234455642   33221      15566654321       111 0       


Q ss_pred             ----cCCCCcEE-EEEEe--CCEEEEEEeecCChHHhh-HHHHHHhCCCCCCh-hh-hcCCCcHHHHHHHHhc
Q 014997          344 ----GNFDPKIA-TFWID--SGKLKGVLVESGSPEEFQ-LLPTLARSQPFVDK-AK-LQQASSVEEALEIARA  406 (414)
Q Consensus       344 ----~~~~~~~~-~~~~~--~~~~~g~~~~~~~~~~~~-~~~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~  406 (414)
                          +....-|. ++.++  +++|+|++++...+.++. .+..+|+.+.+++. .. +..||++.|++.+++.
T Consensus       400 ~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~  472 (490)
T 1fec_A          400 HNISGSTYKKFMVRIVTNHADGEVLGVHMLGDSSPEIIQSVAICLKMGAKISDFYNTIGVHPTSAEELCSMRT  472 (490)
T ss_dssp             HHHHSCTTCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGSCCS
T ss_pred             hhhhcCCCeEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhccccCCCCHHHHHHHHHH
Confidence                11123477 88776  699999999777776655 44556788888877 22 7899999999887663

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=100.00  E-value=1.6e-35  Score=297.74  Aligned_cols=323  Identities=18%  Similarity=0.225  Sum_probs=243.9

Q ss_pred             HHHcCCeEEcCCcEEEEeCCCCEEEeCCCcE--EecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHH-hhcC
Q 014997           56 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKL--LKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS-SLEK  132 (414)
Q Consensus        56 ~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~--~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~-~~~~  132 (414)
                      +++.+++++.+ ++..++++...|.+++|++  +.||+||||||++|+. |.++|.+  +   +.+..+...+.. ....
T Consensus        99 ~~~~~v~~~~g-~v~~id~~~~~V~~~~g~~~~~~~d~lviAtG~~p~~-p~i~G~~--~---~~t~~~~~~~~~~l~~~  171 (466)
T 3l8k_A           99 SQYETLTFYKG-YVKIKDPTHVIVKTDEGKEIEAETRYMIIASGAETAK-LRLPGVE--Y---CLTSDDIFGYKTSFRKL  171 (466)
T ss_dssp             TTCTTEEEESE-EEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEECC-CCCTTGG--G---SBCHHHHHSTTCSCCSC
T ss_pred             HHhCCCEEEEe-EEEEecCCeEEEEcCCCcEEEEecCEEEECCCCCccC-CCCCCcc--c---eEeHHHHHHHHHHHhhC
Confidence            34569999986 8999998888888888988  9999999999998864 5455533  2   334444442221 2235


Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEE
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV  212 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v  212 (414)
                      +++++|||+|++|+|+|..|+++|.+|+++++.+++++..+++++.+.+.+.++   |++++++.|++++..+++.+ .+
T Consensus       172 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~---v~i~~~~~v~~i~~~~~~~v-~v  247 (466)
T 3l8k_A          172 PQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDIVNTLLSILK---LNIKFNSPVTEVKKIKDDEY-EV  247 (466)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCCHHHHHHHHHHHC---CCEECSCCEEEEEEEETTEE-EE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCCCCCHHHHHHHHhcCE---EEEEECCEEEEEEEcCCCcE-EE
Confidence            789999999999999999999999999999999999986449999998888776   99999999999986532333 46


Q ss_pred             EeC--CCc--EEecCEEEEccCCcCCChh-hhhcCCcccCCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHH
Q 014997          213 KLE--DGS--TIDADTIVIGIGAKPTVSP-FERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVD  287 (414)
Q Consensus       213 ~~~--~g~--~i~~D~vi~a~G~~p~~~~-l~~~gl~~~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~  287 (414)
                      .+.  +|+  ++++|.|++|+|++|++.+ ++++|++.+.++|.||+++||+.|+|||+|||+..+.          .+.
T Consensus       248 ~~~~~~G~~~~i~~D~vi~a~G~~p~~~l~l~~~gl~~~~~Gi~vd~~~~t~~~~Iya~GD~~~~~~----------~~~  317 (466)
T 3l8k_A          248 IYSTKDGSKKSIFTNSVVLAAGRRPVIPEGAREIGLSISKTGIVVDETMKTNIPNVFATGDANGLAP----------YYH  317 (466)
T ss_dssp             EECCTTSCCEEEEESCEEECCCEEECCCTTTGGGTCCBCSSSBCCCTTCBCSSTTEEECGGGTCSCC----------SHH
T ss_pred             EEEecCCceEEEEcCEEEECcCCCcccccchhhcCceeCCCCEeECCCccCCCCCEEEEEecCCCCc----------cHh
Confidence            676  666  8999999999999999885 7888998763349999999999999999999998632          566


Q ss_pred             HHHHHHHHHHHHHhcC--CCC--CCCCCCceeeeccCCCCCCcceeeeEeecCCCc-------EEE-Ec-----------
Q 014997          288 HARQSAQHCIKALLSA--QTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TIE-IG-----------  344 (414)
Q Consensus       288 ~A~~~a~~aa~~i~~~--~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~~~-~~-----------  344 (414)
                      .|..||+.+|.||++.  ...  .+..+|+   ..|..+      .+..+|..+.+       ... .-           
T Consensus       318 ~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~---~~~~~~------~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~  388 (466)
T 3l8k_A          318 AAVRMSIAAANNIMANGMPVDYVDVKSIPV---TIYTIP------SLSYVGILPSKARKMGIEIVEAEYNMEEDVSAQIY  388 (466)
T ss_dssp             HHHHHHHHHHHHHHTTTSCCCCCCSTTSCE---EECSSS------CEEEEECCHHHHHHHTCCEEEEEEEGGGSHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCccccCCCCCcE---EEECCC------CeEEecCCHHHHHhCCCCEEEEEEEcccChhheec
Confidence            7999999999999975  322  3444554   233322      14556654321       111 00           


Q ss_pred             CCCCcEEEEEEe--CCEEEEEEeecCChHHhhH-HHHHHhCCCCCCh-hh-hcCCCcHHHHHHHHhcCC
Q 014997          345 NFDPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK-AK-LQQASSVEEALEIARAAL  408 (414)
Q Consensus       345 ~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~-~~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~  408 (414)
                      +...-+.++.++  +++|+|+++++.++.++.. +..+|+.+.+++. .. +..||++.|++.+++..+
T Consensus       389 ~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~~  457 (466)
T 3l8k_A          389 GQKEGVLKLIFERGSMRLIGAWMIGVHSQYLINELGLAVAYGLNAKQLASFAEQHPSTNEIISYTARKV  457 (466)
T ss_dssp             TCCCCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHCCCCTTSTTHHHHHHHHHH
T ss_pred             CCCeEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCcCCHHHHhccccCCCChHHHHHHHHHHH
Confidence            012336777775  4999999997777776654 4456799998888 23 789999999999998753

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=100.00  E-value=3.2e-35  Score=295.13  Aligned_cols=316  Identities=19%  Similarity=0.287  Sum_probs=237.7

Q ss_pred             HHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCC
Q 014997           55 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK  134 (414)
Q Consensus        55 ~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~  134 (414)
                      .+++.+|+++.+ ++..++.  +.|.+ +|+++.||+||||||++|.. |.++|.+  .   ..+..+.   ......++
T Consensus       101 ~~~~~gv~~~~g-~~~~i~~--~~v~~-~g~~~~~d~lviAtGs~p~~-p~i~G~~--~---~~~~~~~---~~~~~~~~  167 (463)
T 2r9z_A          101 YVERLGITRVDG-HARFVDA--HTIEV-EGQRLSADHIVIATGGRPIV-PRLPGAE--L---GITSDGF---FALQQQPK  167 (463)
T ss_dssp             HHHHTTCEEEES-CEEEEET--TEEEE-TTEEEEEEEEEECCCEEECC-CSCTTGG--G---SBCHHHH---HHCSSCCS
T ss_pred             HHHHCCCEEEEe-EEEEccC--CEEEE-CCEEEEcCEEEECCCCCCCC-CCCCCcc--c---eecHHHH---hhhhccCC
Confidence            346789999987 5666764  57777 67789999999999999864 4444431  1   2333333   33234578


Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEe
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL  214 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~  214 (414)
                      +++|||+|++|+|+|..|+++|.+|+++++.+++++ .+++++.+.+.+.+++.||++++++.|++++.++++  ..+.+
T Consensus       168 ~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~--~~v~~  244 (463)
T 2r9z_A          168 RVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLF-QFDPLLSATLAENMHAQGIETHLEFAVAALERDAQG--TTLVA  244 (463)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHTTCEEESSCCEEEEEEETTE--EEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCcccc-ccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCe--EEEEE
Confidence            999999999999999999999999999999999887 489999999999999999999999999999864333  46788


Q ss_pred             CCCc-EEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHH
Q 014997          215 EDGS-TIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHAR  290 (414)
Q Consensus       215 ~~g~-~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~  290 (414)
                      ++|+ ++++|.||+|+|++|++++  ++++|++.+ +|+|.||++++|+.|+|||+|||+..+          ..+..|.
T Consensus       245 ~~G~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~~----------~~~~~A~  314 (463)
T 2r9z_A          245 QDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAYQNTNVPGVYALGDITGRD----------QLTPVAI  314 (463)
T ss_dssp             TTCCEEEEESEEEECSCEEESCTTSCHHHHTCCCCTTSCCCCCTTSBCSSTTEEECGGGGTSC----------CCHHHHH
T ss_pred             eCCcEEEEcCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECCCCccCCCCEEEEeecCCCc----------ccHHHHH
Confidence            8998 8999999999999999874  577888875 677999999999999999999998642          2567799


Q ss_pred             HHHHHHHHHHhcCCC---CCCCCCCceeeeccCCCCCCcceeeeEeecCCC--------cEEE------------EcCCC
Q 014997          291 QSAQHCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--------ETIE------------IGNFD  347 (414)
Q Consensus       291 ~~a~~aa~~i~~~~~---~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~--------~~~~------------~~~~~  347 (414)
                      .||+.+|.||++...   ..|..+|+.   .|..+.      +..+|....        ....            .....
T Consensus       315 ~~g~~aa~~i~g~~~~~~~~~~~~p~~---~~~~~~------~a~vGl~e~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~  385 (463)
T 2r9z_A          315 AAGRRLAERLFDGQSERKLDYDNIPTV---VFAHPP------LSKVGLSEPEARERLGDVLTVYETSFTPMRYALNEHGP  385 (463)
T ss_dssp             HHHHHHHHHHHSCCTTCCCCCSSCCEE---ECCSSC------EEEEECCHHHHHHHHCSCEEEEEEEECCGGGTTSSSCC
T ss_pred             HHHHHHHHHHcCCCCcccCCCCCCCEE---EeCCCC------eEEEcCCHHHHHhcCCCCEEEEEEEcccchhhhhcCCC
Confidence            999999999997432   235556653   232211      334443211        1111            01112


Q ss_pred             CcEEEEEEe--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCCh-hh-hcCCCcHHHHHHHHh
Q 014997          348 PKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDK-AK-LQQASSVEEALEIAR  405 (414)
Q Consensus       348 ~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~  405 (414)
                      ..|.+++++  +++|+|++++...+.++... ..+|+.+.+++. .. +..||+++|++.+++
T Consensus       386 ~~~~klv~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~  448 (463)
T 2r9z_A          386 KTAMKLVCAGPEQRVVGVHVIGDGADEMLQGFAVAVKMGATKADFDNTVAIHPGSAEELVTLK  448 (463)
T ss_dssp             CEEEEEEEETTTTEEEEEEEESTTGGGTSHHHHHHHHTTCBHHHHHTSCCCSSSSGGGGGCCC
T ss_pred             cEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHHHHHHHH
Confidence            346777775  69999999866667665544 445788888777 22 688999999988755

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=100.00  E-value=1.1e-34  Score=292.55  Aligned_cols=327  Identities=19%  Similarity=0.276  Sum_probs=245.3

Q ss_pred             HHHHcCCeEEcCCcEEEEeCCCCEEEeCCC--cEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcC
Q 014997           55 WYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK  132 (414)
Q Consensus        55 ~~~~~~i~~~~~~~V~~id~~~~~V~~~~g--~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~  132 (414)
                      ++++.+++++.+ ++..+++....|.+.+|  +.+.||+||||||++|..+|. ++.+.+.+++      +..+......
T Consensus       108 ~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~~~-~~~~~~~v~~------~~~~~~~~~~  179 (476)
T 3lad_A          108 LIKANGVTLFEG-HGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEIPP-APVDQDVIVD------STGALDFQNV  179 (476)
T ss_dssp             HHHHHTCEEEES-EEEECSTTCEEEECTTSCEEEECCSCEEECCCEEECCCTT-SCCCSSSEEE------HHHHTSCSSC
T ss_pred             HHHhCCCEEEEe-EEEEecCCEEEEEcCCCceEEEEcCEEEEcCCCCCCCCCC-CCCCcccEEe------chhhhccccC
Confidence            455679999986 56667777778888777  579999999999999864443 3333345554      2333333346


Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEE
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV  212 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v  212 (414)
                      +++++|||+|++|+|+|..|+++|.+|+++++.+++++ .+++++.+.+.+.+++.||++++++.|++++.++++ + .+
T Consensus       180 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~Gv~v~~~~~v~~i~~~~~~-~-~v  256 (476)
T 3lad_A          180 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLP-AVDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQ-V-TV  256 (476)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-TSCHHHHHHHHHHHHHTTEEEEETCEEEEEEECSSC-E-EE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc-ccCHHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCE-E-EE
Confidence            79999999999999999999999999999999999997 589999999999999999999999999999865433 2 45


Q ss_pred             EeCCC---cEEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccH
Q 014997          213 KLEDG---STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHV  286 (414)
Q Consensus       213 ~~~~g---~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~  286 (414)
                      .+.++   +++++|.||+|+|++|++++  ++++++..+ +|+|.||+++||+.|+|||+|||+..+.          .+
T Consensus       257 ~~~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~~~----------~~  326 (476)
T 3lad_A          257 KFVDAEGEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDYCATSVPGVYAIGDVVRGAM----------LA  326 (476)
T ss_dssp             EEESSSEEEEEEESEEEECSCEEECCTTCCSSCCSCCBCTTSCBCCCTTSBCSSTTEEECGGGSSSCC----------CH
T ss_pred             EEEeCCCcEEEECCEEEEeeCCcccCCCCCccccCccccCCCCEeeCCCcccCCCCEEEEEccCCCcc----------cH
Confidence            55544   67999999999999999874  677888875 5789999999999999999999996432          46


Q ss_pred             HHHHHHHHHHHHHHhcCCC-CCCCCCCceeeeccCCCCCCcceeeeEeecCCCc------EEEEcC-------------C
Q 014997          287 DHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE------TIEIGN-------------F  346 (414)
Q Consensus       287 ~~A~~~a~~aa~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~------~~~~~~-------------~  346 (414)
                      ..|..||+.+|+||++... ..+..+|+.   .|..+      .+..+|..+.+      -+..+.             .
T Consensus       327 ~~A~~~g~~aa~~i~g~~~~~~~~~~p~~---~~~~~------~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~  397 (476)
T 3lad_A          327 HKASEEGVVVAERIAGHKAQMNYDLIPAV---IYTHP------EIAGVGKTEQALKAEGVAINVGVFPFAASGRAMAAND  397 (476)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCCCTTCCCEE---ECSSS------EEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhcCCCcccCCCCCCEE---EECcC------CEEEeeCCHHHHHhcCCCEEEEEEeccccchheecCC
Confidence            6799999999999997432 234456653   33321      14455544321      011110             1


Q ss_pred             CCcEEEEEEe--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCChh-h-hcCCCcHHHHHHHHhcCCCcc
Q 014997          347 DPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDKA-K-LQQASSVEEALEIARAALPVE  411 (414)
Q Consensus       347 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~  411 (414)
                      ..-+.++.++  +++|+|+++++.++.++... ..+|+.+.+++.- . +..||++.|++.+|+..+...
T Consensus       398 ~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~~  467 (476)
T 3lad_A          398 TAGFVKVIADAKTDRVLGVHVIGPSAAELVQQGAIAMEFGTSAEDLGMMVFAHPALSEALHEAALAVSGH  467 (476)
T ss_dssp             CCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSCCCSSCSHHHHHHHHHHHTTC
T ss_pred             CcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCccCCCChHHHHHHHHHHHhcc
Confidence            1236677665  58999999977777776544 4467888888873 2 689999999999998776543

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=100.00  E-value=4.3e-35  Score=293.77  Aligned_cols=323  Identities=20%  Similarity=0.280  Sum_probs=238.5

Q ss_pred             hHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCC
Q 014997           54 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA  133 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~  133 (414)
                      +++++.+++++.++ +..+++....|.+ +|+++.||+||||||++|.. |+.++.+.+++++   ..+.   ......+
T Consensus        97 ~~~~~~~v~~~~g~-~~~i~~~~~~v~~-~g~~~~~d~lviAtG~~p~~-~~~~g~~~~~v~~---~~~~---~~~~~~~  167 (455)
T 2yqu_A           97 FLFKKNGIARHQGT-ARFLSERKVLVEE-TGEELEARYILIATGSAPLI-PPWAQVDYERVVT---STEA---LSFPEVP  167 (455)
T ss_dssp             HHHHHHTCEEEESC-EEESSSSEEEETT-TCCEEEEEEEEECCCEEECC-CTTBCCCSSSEEC---HHHH---TCCSSCC
T ss_pred             HHHHhCCCEEEEeE-EEEecCCeEEEee-CCEEEEecEEEECCCCCCCC-CCCCCCCcCcEec---hHHh---hccccCC
Confidence            45667899999975 4445543333433 67789999999999999864 4445543334432   2322   2222357


Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEE
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK  213 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~  213 (414)
                      ++++|||+|++|+|+|..|+++|.+|+++++.+++++ .+++++.+.+.+.+++.||+++++++|++++.+++ . ..+.
T Consensus       168 ~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~-~~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~-~-v~v~  244 (455)
T 2yqu_A          168 KRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILP-TMDLEVSRAAERVFKKQGLTIRTGVRVTAVVPEAK-G-ARVE  244 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT-TSCHHHHHHHHHHHHHHTCEEECSCCEEEEEEETT-E-EEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCcccc-ccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCC-E-EEEE
Confidence            8999999999999999999999999999999999887 58899999999999999999999999999986433 2 3567


Q ss_pred             eCCCcEEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHH
Q 014997          214 LEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHAR  290 (414)
Q Consensus       214 ~~~g~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~  290 (414)
                      +++|+++++|.||+|+|.+|+.++  ++++|+..+ +|+|.||++++|+.|+|||+|||+..+.          .+..|.
T Consensus       245 ~~~g~~i~~D~vv~A~G~~p~~~~l~~~~~g~~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~----------~~~~A~  314 (455)
T 2yqu_A          245 LEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDEHLRTRVPHIYAIGDVVRGPM----------LAHKAS  314 (455)
T ss_dssp             ETTSCEEEESEEEECSCEEECCTTCCGGGGTCCCCTTSCCCCCTTSBCSSTTEEECGGGSSSCC----------CHHHHH
T ss_pred             ECCCeEEEcCEEEECcCCCcCCCCCChhhcCCccCCCCcEeECCCcccCCCCEEEEecCCCCcc----------CHHHHH
Confidence            778889999999999999999887  678888865 4779999999999999999999987532          456799


Q ss_pred             HHHHHHHHHHhcCCCCCC--CCCCceeeeccCCCCCCcceeeeEeecCCC-------cEEE-------------EcCCCC
Q 014997          291 QSAQHCIKALLSAQTHTY--DYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETIE-------------IGNFDP  348 (414)
Q Consensus       291 ~~a~~aa~~i~~~~~~~~--~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~~~-------------~~~~~~  348 (414)
                      .||+.+|+||++. ...+  ..+|++  ..++.       .+..+|....       +...             .++ ..
T Consensus       315 ~~g~~aa~~i~~~-~~~~~~~~~p~~--~~~~~-------~~a~~G~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~-~~  383 (455)
T 2yqu_A          315 EEGIAAVEHMVRG-FGHVDYQAIPSV--VYTHP-------EIAAVGYTEEELKAQGIPYKVGKFPYSASGRARAMGE-TE  383 (455)
T ss_dssp             HHHHHHHHHHHHS-CCCCCGGGCCEE--ECSSS-------EEEEEECCHHHHHHHTCCEEEEEEEGGGCHHHHHHTC-CC
T ss_pred             HhHHHHHHHHcCC-CccCCCCCCCEE--EEcCC-------ceEEEECCHHHHHHcCCCEEEEEEEcccchHHHhcCC-Cc
Confidence            9999999999974 3333  334542  22221       1334443221       1111             111 23


Q ss_pred             cEEEEEEe--CCEEEEEEeecCChHHh-hHHHHHHhCCCCCChh-h-hcCCCcHHHHHHHHhcCCC
Q 014997          349 KIATFWID--SGKLKGVLVESGSPEEF-QLLPTLARSQPFVDKA-K-LQQASSVEEALEIARAALP  409 (414)
Q Consensus       349 ~~~~~~~~--~~~~~g~~~~~~~~~~~-~~~~~l~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~  409 (414)
                      .+.+++++  +++|+|+.++...+.++ ..+..+|+.+.+++.- . ...||++.|++.+|+..+.
T Consensus       384 ~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~~~~~~~~~Pt~~e~~~~~~~~~~  449 (455)
T 2yqu_A          384 GFIKVLAHAKTDRILGVHGIGARVGDVLAEAALALFFKASAEDLGRAPHAHPSLSEILKEAALAAW  449 (455)
T ss_dssp             CEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCTHHHHHHHHHHHH
T ss_pred             EEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHHHHHHHHHHh
Confidence            47788775  79999999865555554 4455567899988872 2 7899999999999987544

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=7.9e-35  Score=291.98  Aligned_cols=320  Identities=17%  Similarity=0.234  Sum_probs=236.2

Q ss_pred             hHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCC
Q 014997           54 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA  133 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~  133 (414)
                      +++++.||+++.++.+ .++  .++|.+++ +++.||+||||||++|+.+|.++. + ..+.   +..+..   .....+
T Consensus       104 ~~~~~~gv~~~~g~~~-~~~--~~~v~v~~-~~~~~d~lviATGs~p~~~~~~~~-~-~~v~---~~~~~~---~~~~~~  171 (458)
T 1lvl_A          104 ALLKKHGVKVVHGWAK-VLD--GKQVEVDG-QRIQCEHLLLATGSSSVELPMLPL-G-GPVI---SSTEAL---APKALP  171 (458)
T ss_dssp             HHHHHTTCEEECSCEE-EEE--TTEEEETT-EEEECSEEEECCCEEECCBTTBCC-B-TTEE---CHHHHT---CCSSCC
T ss_pred             HHHHhCCcEEEEEEEE-Ecc--CCEEEEee-EEEEeCEEEEeCCCCCCCCCCCCc-c-CcEe---cHHHHh---hhhccC
Confidence            4567889999998544 455  46888876 779999999999999865442331 1 1232   333332   222357


Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEE
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK  213 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~  213 (414)
                      ++++|||+|++|+|+|..|+++|.+|+++++.+++++ .+++++.+.+.+.+++.||++++++.|++++.  + . ..+.
T Consensus       172 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~--~-~-v~v~  246 (458)
T 1lvl_A          172 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILP-TYDSELTAPVAESLKKLGIALHLGHSVEGYEN--G-C-LLAN  246 (458)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHHTCEEETTCEEEEEET--T-E-EEEE
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCcccc-ccCHHHHHHHHHHHHHCCCEEEECCEEEEEEe--C-C-EEEE
Confidence            9999999999999999999999999999999999997 68999999999999999999999999999984  2 2 2444


Q ss_pred             eCCC--cEEecCEEEEccCCcCCChh--hhhcCCcccCCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHH
Q 014997          214 LEDG--STIDADTIVIGIGAKPTVSP--FERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHA  289 (414)
Q Consensus       214 ~~~g--~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A  289 (414)
                      .++|  +++++|.||+|+|.+|+.++  ++++|+..++++|.||+++||+.|+|||+|||+..+.          .+..|
T Consensus       247 ~~~G~~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~~i~vd~~~~t~~~~Iya~GD~~~~~~----------~~~~A  316 (458)
T 1lvl_A          247 DGKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGAAIAIDERCQTSMHNVWAIGDVAGEPM----------LAHRA  316 (458)
T ss_dssp             CSSSCCCEECCSCEEECCCEEECCSSSSGGGSCCCEETTEECCCTTCBCSSTTEEECGGGGCSSC----------CHHHH
T ss_pred             ECCCceEEEECCEEEECcCCCcCCCCCCcHhcCCcccCCEEeECCCCcCCCCCEEEeeccCCCcc----------cHHHH
Confidence            4456  68999999999999999886  5788888753389999999999999999999998542          46679


Q ss_pred             HHHHHHHHHHHhcCCCCC--CCCCCceeeeccCCCCCCcceeeeEeecCCC-------cEEE--E----------cCCCC
Q 014997          290 RQSAQHCIKALLSAQTHT--YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETIE--I----------GNFDP  348 (414)
Q Consensus       290 ~~~a~~aa~~i~~~~~~~--~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~~~--~----------~~~~~  348 (414)
                      ..||+.+|+||++. ..+  +..+|++  ..++.       .+..+|....       +...  .          .....
T Consensus       317 ~~~g~~aa~~i~g~-~~~~~~~~~p~~--~~~~p-------~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~  386 (458)
T 1lvl_A          317 MAQGEMVAEIIAGK-ARRFEPAAIAAV--CFTDP-------EVVVVGKTPEQASQQGLDCIVAQFPFAANGRAMSLESKS  386 (458)
T ss_dssp             HHHHHHHHHHHTTC-CCCCCCSCCCEE--ECSSS-------EEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCC
T ss_pred             HHHHHHHHHHhcCC-CccCCCCCCCEE--EECCC-------CeEEEeCCHHHHHHcCCCEEEEEEECccchhhhhcCCCc
Confidence            99999999999973 333  3445543  22221       1333443211       1111  0          01123


Q ss_pred             cEEEEEEe--CCEEEEEEeecCChHHh-hHHHHHHhCCCCCChh-h-hcCCCcHHHHHHHHhcCCCc
Q 014997          349 KIATFWID--SGKLKGVLVESGSPEEF-QLLPTLARSQPFVDKA-K-LQQASSVEEALEIARAALPV  410 (414)
Q Consensus       349 ~~~~~~~~--~~~~~g~~~~~~~~~~~-~~~~~l~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~  410 (414)
                      .+.+++++  +++|+|++++...+.++ ..+..+|+.+.+++.- . +..||+++|++.+|++.+..
T Consensus       387 g~~kl~~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~a~~~~~~  453 (458)
T 1lvl_A          387 GFVRVVARRDNHLILGWQAVGVAVSELSTAFAQSLEMGACLEDVAGTIHAHPTLGEAVQEAALRALG  453 (458)
T ss_dssp             CEEEEEEETTTCBEEEEEEEETTGGGHHHHHHHHHHHTCBHHHHHTSCCCTTCTTHHHHHHHHHHTT
T ss_pred             EEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCCHHHHHHHHHHHHhc
Confidence            47778774  69999999866665554 4555678888888872 2 68899999999999876543

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=100.00  E-value=1.5e-34  Score=292.52  Aligned_cols=326  Identities=19%  Similarity=0.294  Sum_probs=242.3

Q ss_pred             hHHHHcCCeEEcCCcEEEEeCCCCEEEeCCC--cEEecCeEEEccCCCCCCCCCCCCCC--CCCEEEecCHHHHHHHHHh
Q 014997           54 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGGY--LPGVHYIRDVADADALISS  129 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g--~~~~yd~LviAtG~~~~~~~~~~g~~--~~gv~~~~~~~~~~~~~~~  129 (414)
                      .++++.+++++.+ ++..+++....|.+.+|  +++.||+||||||++|..+   +|..  ..+.... +   +..+...
T Consensus       123 ~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~i---pg~~~~~~~~~~~-~---~~~~~~~  194 (491)
T 3urh_A          123 FLFKKNKIDGFQG-TGKVLGQGKVSVTNEKGEEQVLEAKNVVIATGSDVAGI---PGVEVAFDEKTIV-S---STGALAL  194 (491)
T ss_dssp             HHHHHTTCEEEES-EEEECSSSEEEEECTTSCEEEEECSEEEECCCEECCCB---TTBCCCCCSSSEE-C---HHHHTSC
T ss_pred             HHHHhCCCEEEEE-EEEEecCCEEEEEeCCCceEEEEeCEEEEccCCCCCCC---CCcccccCCeeEE-e---hhHhhhh
Confidence            3456789999986 56667766667777777  5799999999999986433   3432  2332222 2   2333333


Q ss_pred             hcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcE
Q 014997          130 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV  209 (414)
Q Consensus       130 ~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~  209 (414)
                      ...+++++|||+|++|+|+|..|+++|.+|+++++.+++++ .+++++.+.+.+.+++.||++++++.+++++.++++. 
T Consensus       195 ~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~~d~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~~-  272 (491)
T 3urh_A          195 EKVPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILG-GMDGEVAKQLQRMLTKQGIDFKLGAKVTGAVKSGDGA-  272 (491)
T ss_dssp             SSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSS-SSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEE-
T ss_pred             hhcCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeccccccc-cCCHHHHHHHHHHHHhCCCEEEECCeEEEEEEeCCEE-
Confidence            34689999999999999999999999999999999999987 4899999999999999999999999999998653332 


Q ss_pred             EEEEeCC---C--cEEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCccc
Q 014997          210 AAVKLED---G--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA  281 (414)
Q Consensus       210 ~~v~~~~---g--~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~  281 (414)
                       .+.+.+   |  +++++|.||+|+|++|++++  +++.|+..+ +|+|.||+++||+.|+|||+|||+..+.       
T Consensus       273 -~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~-------  344 (491)
T 3urh_A          273 -KVTFEPVKGGEATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRHFQTSIAGVYAIGDVVRGPM-------  344 (491)
T ss_dssp             -EEEEEETTSCCCEEEEESEEEECCCCEECCTTSCHHHHTCCBCTTSCBCCCTTCBCSSTTEEECGGGSSSCC-------
T ss_pred             -EEEEEecCCCceEEEEcCEEEEeeCCccCCCccCchhcCceECCCCCEeECCCCCCCCCCEEEEEecCCCcc-------
Confidence             344432   4  58999999999999999986  678888875 5779999999999999999999996542       


Q ss_pred             ccccHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeeccCCCCCCcceeeeEeecCCCc-------EEE-E---------
Q 014997          282 RVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TIE-I---------  343 (414)
Q Consensus       282 ~~~~~~~A~~~a~~aa~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~~~-~---------  343 (414)
                         .+..|..||+.+|++|++... ..+..+|+.   .|..+      .+..+|..+.+       ... .         
T Consensus       345 ---~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~---~~~~p------~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~  412 (491)
T 3urh_A          345 ---LAHKAEDEGVAVAEIIAGQAGHVNYDVIPGV---VYTQP------EVASVGKTEEELKAAGVAYKIGKFPFTANGRA  412 (491)
T ss_dssp             ---CHHHHHHHHHHHHHHHTTSCCCCCTTCCCEE---ECSSS------CEEEEECCHHHHHHTTCCEEEEEEEGGGCHHH
T ss_pred             ---chhHHHHHHHHHHHHHcCCCcccCCCCCCEE---EEccC------CeEEEeCCHHHHHhCCCCEEEEEEecCcchhh
Confidence               566799999999999997432 224445653   23322      14455544321       110 0         


Q ss_pred             ---cCCCCcEEEEEEe--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCChhh--hcCCCcHHHHHHHHhcCCCc
Q 014997          344 ---GNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDKAK--LQQASSVEEALEIARAALPV  410 (414)
Q Consensus       344 ---~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  410 (414)
                         ++ ..-+.++.++  +++|+|+++++.++.++... ..+|+.+.+++.-.  ...||++.|++.+|+..+..
T Consensus       413 ~~~~~-~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~  486 (491)
T 3urh_A          413 RAMLQ-TDGFVKILADKETDRVLGGHIIGFGAGEMIHEIAVLMEFGGSSEDLGRTCHAHPTMSEAVKEAALSTFF  486 (491)
T ss_dssp             HHTTC-CCCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCTTHHHHHHHHHHHC
T ss_pred             hcCCC-CcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCccCCCChHHHHHHHHHHhhh
Confidence               11 1236677665  59999999977777776544 45678898888832  68999999999999876654

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=100.00  E-value=1.8e-34  Score=290.95  Aligned_cols=319  Identities=19%  Similarity=0.231  Sum_probs=237.4

Q ss_pred             HHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCC--CCCCCCCCCEEEecCHHHHHHHHHhhcC
Q 014997           55 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGGYLPGVHYIRDVADADALISSLEK  132 (414)
Q Consensus        55 ~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~--~~~g~~~~gv~~~~~~~~~~~~~~~~~~  132 (414)
                      .+++.+++++.+ ++..+++....|.. +++++.||+||||||++|..++  .++|.+     ...+   ++.+......
T Consensus       117 ~~~~~gv~~~~g-~~~~~~~~~~~v~~-~g~~~~~d~lviAtG~~p~~p~~~~i~G~~-----~~~~---~~~~~~~~~~  186 (478)
T 3dk9_A          117 NLTKSHIEIIRG-HAAFTSDPKPTIEV-SGKKYTAPHILIATGGMPSTPHESQIPGAS-----LGIT---SDGFFQLEEL  186 (478)
T ss_dssp             HHHHTTCEEEES-CEEECSCSSCEEEE-TTEEEECSCEEECCCEEECCCCTTTSTTGG-----GSBC---HHHHTTCCSC
T ss_pred             HHHhCCcEEEEe-EEEEeeCCeEEEEE-CCEEEEeeEEEEccCCCCCCCCcCCCCCCc-----eeEc---hHHhhchhhc
Confidence            345679999986 67777777777774 6778999999999999886431  444422     2222   2333333345


Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEE
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV  212 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v  212 (414)
                      +++++|||+|++|+|+|..|+++|.+|+++++.+++++ .+++++.+.+.+.+++.||++++++.+++++..+++....+
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~~d~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v  265 (478)
T 3dk9_A          187 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLR-SFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSM  265 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT-TSCHHHHHHHHHHHHHTTCEEETTEEEEEEEECSSSEEEEE
T ss_pred             CccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCcccc-ccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEE
Confidence            79999999999999999999999999999999999986 58999999999999999999999999999987655533356


Q ss_pred             EeCC---C----cEEecCEEEEccCCcCCCh-h-hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccc
Q 014997          213 KLED---G----STIDADTIVIGIGAKPTVS-P-FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTAR  282 (414)
Q Consensus       213 ~~~~---g----~~i~~D~vi~a~G~~p~~~-~-l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~  282 (414)
                      .+.+   |    +++++|.||+|+|++|+++ + ++++|++.+ +|+|.||++++|+.|+|||+|||+..+.        
T Consensus       266 ~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~--------  337 (478)
T 3dk9_A          266 VTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKAL--------  337 (478)
T ss_dssp             EECCTTSCCEEEEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTCCBCCCTTCBCSSTTEEECGGGGCSSC--------
T ss_pred             EEccCCCCcccceEEEcCEEEEeeccccCCCCCCchhcCCeeCCCCCEeeCCCcccCCCCEEEEEecCCCCc--------
Confidence            6665   2    5799999999999999987 3 678898874 6789999999999999999999995432        


Q ss_pred             cccHHHHHHHHHHHHHHHhcCC-C--CCCCCCCceeeeccCCCCCCcceeeeEeecCCCc---------EEEE-----c-
Q 014997          283 VEHVDHARQSAQHCIKALLSAQ-T--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE---------TIEI-----G-  344 (414)
Q Consensus       283 ~~~~~~A~~~a~~aa~~i~~~~-~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~---------~~~~-----~-  344 (414)
                        .+..|..||+.+|+||++.. .  ..|..+|+.   .|..+      .+..+|..+.+         ....     . 
T Consensus       338 --~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~---~~~~p------~~a~vGlte~~a~~~~~~~~~~~~~~~~~~~  406 (478)
T 3dk9_A          338 --LTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTV---VFSHP------PIGTVGLTEDEAIHKYGIENVKTYSTSFTPM  406 (478)
T ss_dssp             --CHHHHHHHHHHHHHHHHSCCTTCCCCCTTCCEE---ECCSS------CEEEEECCHHHHHHHHCGGGEEEEEEEECCG
T ss_pred             --cHhHHHHHHHHHHHHHcCCCCcccCCCCCCCeE---EECCC------ceEEeeCCHHHHHhhCCCccEEEEEeecCcc
Confidence              46679999999999999752 2  245556653   34322      13445543211         1100     0 


Q ss_pred             ------CCCCcEEEEEEe--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCChh-h-hcCCCcHHHHHHH
Q 014997          345 ------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDKA-K-LQQASSVEEALEI  403 (414)
Q Consensus       345 ------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~~-~-~~~~~~~~~~~~~  403 (414)
                            +...-+.++.++  +++|+|+++++.++.++... ..+|+.+.+++.- . +..||++.|++..
T Consensus       407 ~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~  476 (478)
T 3dk9_A          407 YHAVTKRKTKCVMKMVCANKEEKVVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNTVAIHPTSSEELVT  476 (478)
T ss_dssp             GGGGCSSCCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSSSGGGGGS
T ss_pred             hhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHh
Confidence                  011236677664  59999999977777776544 4467888888882 2 7899999998753

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=100.00  E-value=1.1e-34  Score=294.47  Aligned_cols=324  Identities=19%  Similarity=0.226  Sum_probs=217.4

Q ss_pred             HHHHcCCeEEcCCcEEEEeCCCCEEEeC----CCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhh
Q 014997           55 WYKEKGIEMIYQDPVTSIDIEKQTLITN----SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL  130 (414)
Q Consensus        55 ~~~~~~i~~~~~~~V~~id~~~~~V~~~----~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~  130 (414)
                      .+++.+|+++.+ ...-+++..-.|...    +++++.+|++|||||++|..+|.+++ ....+  + +   ++.+....
T Consensus       149 ~l~~~~V~~i~G-~a~f~~~~~v~V~~~~~~~~~~~i~a~~iiIATGs~P~~P~~~~~-~~~~~--~-t---s~~~l~l~  220 (542)
T 4b1b_A          149 GLRSSKVKYING-LAKLKDKNTVSYYLKGDLSKEETVTGKYILIATGCRPHIPDDVEG-AKELS--I-T---SDDIFSLK  220 (542)
T ss_dssp             HHHHTTCEEECE-EEEEEETTEEEEEEC--CCCEEEEEEEEEEECCCEEECCCSSSBT-HHHHC--B-C---HHHHTTCS
T ss_pred             HHHhCCCEEEee-eEEEcCCCcceEeecccCCceEEEeeeeEEeccCCCCCCCCcccC-CCccc--c-C---chhhhccc
Confidence            356789999886 555555544344333    34579999999999999975433221 11111  1 1   34444444


Q ss_pred             cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEE
Q 014997          131 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  210 (414)
Q Consensus       131 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~  210 (414)
                      ..+++++|||||++|+|+|..++++|.+||++++ +++++ .++++++..+.+.|++.||+++++..+++++..++ . .
T Consensus       221 ~lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~-~~~L~-~~D~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~~~-~-~  296 (542)
T 4b1b_A          221 KDPGKTLVVGASYVALECSGFLNSLGYDVTVAVR-SIVLR-GFDQQCAVKVKLYMEEQGVMFKNGILPKKLTKMDD-K-I  296 (542)
T ss_dssp             SCCCSEEEECCSHHHHHHHHHHHHHTCCEEEEES-SCSST-TSCHHHHHHHHHHHHHTTCEEEETCCEEEEEEETT-E-E
T ss_pred             cCCceEEEECCCHHHHHHHHHHHhcCCeEEEecc-ccccc-ccchhHHHHHHHHHHhhcceeecceEEEEEEecCC-e-E
Confidence            5689999999999999999999999999999987 46776 58999999999999999999999999999986533 3 3


Q ss_pred             EEEeCCCcEEecCEEEEccCCcCCChh--hhhcCCccc-CCC-EEEcCCCCCCCCcEEEEcccccc-CCccCCccccccc
Q 014997          211 AVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGG-IQVDGQFRTRMPGIFAIGDVAAF-PLKMYDRTARVEH  285 (414)
Q Consensus       211 ~v~~~~g~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~-i~vd~~~~t~~~~IyA~GD~a~~-~~~~~~~~~~~~~  285 (414)
                      .+.+.++.++.+|.|++|+|++||++.  ++.+++..+ +++ |.+|+++||+.|+|||+|||+.. +.          .
T Consensus       297 ~v~~~~~~~~~~D~vLvAvGR~Pnt~~L~le~~gv~~~~~~~~i~vd~~~~Ts~p~IyAiGDv~~~~p~----------L  366 (542)
T 4b1b_A          297 LVEFSDKTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKSNNKIIADHLSCTNIPSIFAVGDVAENVPE----------L  366 (542)
T ss_dssp             EEEETTSCEEEESEEEECSCEEESCGGGCGGGTTCCEETTTTEECCCTTSBCSSTTEEECTTSBTTCCC----------C
T ss_pred             EEEEcCCCeEEEEEEEEcccccCCccccCcccceeeecccCceEeccccccccCCCeEEeccccCCchh----------H
Confidence            678888889999999999999999986  456777764 344 57889999999999999999853 22          3


Q ss_pred             HHHHHHHHHHHHHHHhcCCCC--CCCCCCceeeeccCCCCCCcceeeeEeecCCCcE----------EE-----------
Q 014997          286 VDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGET----------IE-----------  342 (414)
Q Consensus       286 ~~~A~~~a~~aa~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~~----------~~-----------  342 (414)
                      ...|..+|+.++.|+++....  .|..+|+.   +|..+-      +..+|..+.+.          +.           
T Consensus       367 a~~A~~eg~~aa~~i~g~~~~~~d~~~iP~~---vft~Pe------iA~VGlTE~eA~~~g~~~~v~~~~~~~~~~~~~~  437 (542)
T 4b1b_A          367 APVAIKAGEILARRLFKDSDEIMDYSYIPTS---IYTPIE------YGACGYSEEKAYELYGKSNVEVFLQEFNNLEISA  437 (542)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCCCCCCSSCCEE---ECSSSC------EEEEECCHHHHHHHHCTTTEEEEEC---------
T ss_pred             HHHHHHHHHHHHHHHhcCCCcccCCCCCceE---EeCCCC------eEEEeCCHHHHHHhCCCCcEEEEEeeccchhhhh
Confidence            445889999999999975543  35557763   444331      33344332100          00           


Q ss_pred             -------Ec--------CCCCcEEEEEE-e--CCEEEEEEeecCChHHhhHHHH-HHhCCCCCCh-hh-hcCCCcHHHHH
Q 014997          343 -------IG--------NFDPKIATFWI-D--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVDK-AK-LQQASSVEEAL  401 (414)
Q Consensus       343 -------~~--------~~~~~~~~~~~-~--~~~~~g~~~~~~~~~~~~~~~~-l~~~~~~~~~-~~-~~~~~~~~~~~  401 (414)
                             ..        ....-|.++.. +  +++|+|++++..++.++...-. +|+.+.+++. .. +..||+++|++
T Consensus       438 ~~~~~~~~~~~~~~~~~~~~~g~vKli~~~~~t~~ILGa~ivG~~A~ElI~~~alAi~~~~t~~dl~~~i~~HPTlsE~l  517 (542)
T 4b1b_A          438 VHRQKHIRAQKDEYDLDVSSTCLAKLVCLKNEDNRVIGFHYVGPNAGEVTQGMALALRLKVKKKDFDNCIGIHPTDAESF  517 (542)
T ss_dssp             --------------------CCCEEEEEETTTTTBEEEEEEESTTHHHHHHHHHHHHHTCCBHHHHHHC-----------
T ss_pred             hhhhhhhhcccccccccCCCceEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhccCCcCCCHHHHH
Confidence                   00        00112455543 3  5899999998778888766554 5688888887 33 78999999999


Q ss_pred             HHHhcCCC
Q 014997          402 EIARAALP  409 (414)
Q Consensus       402 ~~~~~~~~  409 (414)
                      .++..++.
T Consensus       518 ~~~~~t~~  525 (542)
T 4b1b_A          518 MNLFVTIS  525 (542)
T ss_dssp             --------
T ss_pred             HHHHHHHH
Confidence            99887764

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=100.00  E-value=4.8e-35  Score=295.94  Aligned_cols=271  Identities=21%  Similarity=0.291  Sum_probs=207.7

Q ss_pred             CCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHh-HH--HHcCCeEEcCCcEEEEeCCCCEE
Q 014997            3 DGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE-WY--KEKGIEMIYQDPVTSIDIEKQTL   79 (414)
Q Consensus         3 ~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~-~~--~~~~i~~~~~~~V~~id~~~~~V   79 (414)
                      +-+||||++++++.| +|.|.. +..|. ....++            ..+.. .+  .+.+++++.+ +|++||+++++|
T Consensus        65 ~~~VtLId~~~~~~~-~PlL~~-va~G~-l~~~~i------------~~p~~~~~~~~~~~v~~~~~-~v~~ID~~~k~V  128 (502)
T 4g6h_A           65 KYNVSIISPRSYFLF-TPLLPS-APVGT-VDEKSI------------IEPIVNFALKKKGNVTYYEA-EATSINPDRNTV  128 (502)
T ss_dssp             TCEEEEEESSSEEEC-GGGGGG-TTTTS-SCGGGG------------EEEHHHHHTTCSSCEEEEEE-EEEEEEGGGTEE
T ss_pred             CCcEEEECCCCCccc-ccchhH-Hhhcc-ccHHHh------------hhhHHHHHHhhcCCeEEEEE-EEEEEEhhhCEE
Confidence            458999999998766 487764 55442 111111            11222 22  2457999885 899999999998


Q ss_pred             EeC--------------------CCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhc--------
Q 014997           80 ITN--------------------SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE--------  131 (414)
Q Consensus        80 ~~~--------------------~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~--------  131 (414)
                      +++                    ++.++.||+||||||+++.. +.+||.. +..+.+++++++..++..+.        
T Consensus       129 ~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~-~~ipG~~-e~a~~l~t~~dA~~ir~~l~~~~e~a~~  206 (502)
T 4g6h_A          129 TIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNT-FGIPGVT-DYGHFLKEIPNSLEIRRTFAANLEKANL  206 (502)
T ss_dssp             EEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECC-TTCTTHH-HHCEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeecccceeecccccccccccCCceEEeCCEEEEcCCccccc-CCccCcc-cccCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence            763                    46689999999999999874 4445532 33477899998877654331        


Q ss_pred             ---------CCCeEEEECCChHHHHHHHHHHhC--------------CCcEEEEeeCCcccccccCHHHHHHHHHHHHhC
Q 014997          132 ---------KAKKVVVVGGGYIGMEVAAAAVGW--------------KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN  188 (414)
Q Consensus       132 ---------~~~~vvVvGgG~~g~e~A~~l~~~--------------g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~  188 (414)
                               ...+++|||||++|+|+|..|+.+              ..+|+++++.+++++ .+++++++.+.+.|+++
T Consensus       207 ~~~~~~~~~~~~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il~-~~~~~~~~~~~~~L~~~  285 (502)
T 4g6h_A          207 LPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLN-MFEKKLSSYAQSHLENT  285 (502)
T ss_dssp             SCTTCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSST-TSCHHHHHHHHHHHHHT
T ss_pred             ccccchhhccccceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEecccccccc-CCCHHHHHHHHHHHHhc
Confidence                     124799999999999999998754              267999999999998 58999999999999999


Q ss_pred             CcEEEcCceEEEEEecCCCcEEEEEeCCCc----EEecCEEEEccCCcCCC---hhhhhcCCcc-cCCCEEEcCCCCC-C
Q 014997          189 GVKFVKGASIKNLEAGSDGRVAAVKLEDGS----TIDADTIVIGIGAKPTV---SPFERVGLNS-SVGGIQVDGQFRT-R  259 (414)
Q Consensus       189 gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~----~i~~D~vi~a~G~~p~~---~~l~~~gl~~-~~g~i~vd~~~~t-~  259 (414)
                      ||++++++.|++++.  ++......+.||+    +++||+||||+|.+|+.   ++....++.. ++|+|.||++||| +
T Consensus       286 GV~v~~~~~v~~v~~--~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~~~~~~l~~~~~~~~~~~g~I~Vd~~lq~~~  363 (502)
T 4g6h_A          286 SIKVHLRTAVAKVEE--KQLLAKTKHEDGKITEETIPYGTLIWATGNKARPVITDLFKKIPEQNSSKRGLAVNDFLQVKG  363 (502)
T ss_dssp             TCEEETTEEEEEECS--SEEEEEEECTTSCEEEEEEECSEEEECCCEECCHHHHHHHHHSGGGTTCCSSEEBCTTSBBTT
T ss_pred             ceeeecCceEEEEeC--CceEEEEEecCcccceeeeccCEEEEccCCcCCHHHHhHHHhccccccCCCceeECCccccCC
Confidence            999999999999963  4444455667764    69999999999999983   2334555554 3578999999998 8


Q ss_pred             CCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997          260 MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       260 ~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                      +|||||+|||+..+.++        ..+.|.+||+++|+||.+
T Consensus       364 ~~~IfAiGD~a~~~~p~--------~a~~A~qqg~~~A~ni~~  398 (502)
T 4g6h_A          364 SNNIFAIGDNAFAGLPP--------TAQVAHQEAEYLAKNFDK  398 (502)
T ss_dssp             CSSEEECGGGEESSSCC--------CHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcccCCCCCC--------chHHHHHHHHHHHHHHHH
Confidence            99999999999876543        567799999999999964

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=100.00  E-value=2.4e-34  Score=288.94  Aligned_cols=321  Identities=21%  Similarity=0.303  Sum_probs=243.1

Q ss_pred             hHHHHcCCeEEcCCcEEEEeCCCCEEEe-CCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcC
Q 014997           54 EWYKEKGIEMIYQDPVTSIDIEKQTLIT-NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK  132 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~~id~~~~~V~~-~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~  132 (414)
                      .++++.+++++.+ ++..++  .+.|.+ .+++.+.||+||||||++|...|.++|.+     ...+..   .+......
T Consensus       101 ~~~~~~gv~~~~g-~~~~i~--~~~v~~~~~~~~~~~d~lviAtG~~p~~~p~i~G~~-----~~~~~~---~~~~~~~~  169 (463)
T 4dna_A          101 KGLANAGAEILDT-RAELAG--PNTVKLLASGKTVTAERIVIAVGGHPSPHDALPGHE-----LCITSN---EAFDLPAL  169 (463)
T ss_dssp             HHHHHHTCEEEES-CEEESS--SSEEEETTTTEEEEEEEEEECCCEEECCCTTSTTGG-----GCBCHH---HHTTCSSC
T ss_pred             HHHHhCCCEEEEE-EEEEee--CCEEEEecCCeEEEeCEEEEecCCCcccCCCCCCcc-----ccccHH---HHhhhhcC
Confidence            3455679999987 676654  467877 57788999999999999886234444432     222333   33333345


Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEE
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV  212 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v  212 (414)
                      +++++|||+|++|+|+|..|+++|.+|+++++.+++++ .+++++.+.+.+.+++.||++++++.|++++.++++. ..+
T Consensus       170 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~-~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~-~~v  247 (463)
T 4dna_A          170 PESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILS-RFDQDMRRGLHAAMEEKGIRILCEDIIQSVSADADGR-RVA  247 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSC-EEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc-ccCHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCCE-EEE
Confidence            89999999999999999999999999999999999886 5899999999999999999999999999998754554 367


Q ss_pred             E-eCCCcEEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHH
Q 014997          213 K-LEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDH  288 (414)
Q Consensus       213 ~-~~~g~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~  288 (414)
                      . +++|+ +++|.||+|+|++|++.+  +++.|++.+ +|+|.||+++||+.|+|||+|||+..+.          .+..
T Consensus       248 ~~~~~g~-i~aD~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~----------~~~~  316 (463)
T 4dna_A          248 TTMKHGE-IVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRTSTPGIYALGDVTDRVQ----------LTPV  316 (463)
T ss_dssp             EESSSCE-EEESEEEECSCEEESCTTSSTGGGTCCBCTTSCBCCCTTCBCSSTTEEECSGGGSSCC----------CHHH
T ss_pred             EEcCCCe-EEeCEEEEeeCcccCCCCCCccccCceECCCCCEeECcCCCCCCCCEEEEEecCCCCC----------ChHH
Confidence            7 88887 999999999999999887  788898875 5789999999999999999999997432          5667


Q ss_pred             HHHHHHHHHHHHhcCCCC--CCCCCCceeeeccCCCCCCcceeeeEeecCCCc------EEEEc-----C--------CC
Q 014997          289 ARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE------TIEIG-----N--------FD  347 (414)
Q Consensus       289 A~~~a~~aa~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~------~~~~~-----~--------~~  347 (414)
                      |..||+.+|+||++....  .+..+|+.   .|..+      .+..+|..+.+      .+..+     .        ..
T Consensus       317 A~~~g~~aa~~i~g~~~~~~~~~~~p~~---~~~~p------~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (463)
T 4dna_A          317 AIHEAMCFIETEYKNNPTSPDHDLIATA---VFSQP------EIGTVGITEEEAARKFQEIEVYRAEFRPMKATLSGRKE  387 (463)
T ss_dssp             HHHHHHHHHHHHHSSCCCCCCCSCCCEE---ECSSS------CEEEEECCHHHHHHHSSEEEEEEEEECCTTHHHHCCCC
T ss_pred             HHHHHHHHHHHHcCCCCcccCCCCCCEE---EECCC------CeEEecCCHHHHHHcCCCeEEEEEeccccchhhcCCCc
Confidence            999999999999975433  34445553   34322      14455544321      01100     0        11


Q ss_pred             CcEEEEEEe--CCEEEEEEeecCChHHhhHHH-HHHhCCCCCChh-h-hcCCCcHHHHHHHHhcC
Q 014997          348 PKIATFWID--SGKLKGVLVESGSPEEFQLLP-TLARSQPFVDKA-K-LQQASSVEEALEIARAA  407 (414)
Q Consensus       348 ~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~-~l~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~  407 (414)
                      .-+.++.++  +++|+|+++++.++.++...- .+|+.+.+++.- . +..||++.|++.+++..
T Consensus       388 ~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~  452 (463)
T 4dna_A          388 KTIMKLVVNAADRKVVGAHILGHDAGEMAQLLGISLRAGCTKDDFDRTMAVHPTAAEELVTMYQP  452 (463)
T ss_dssp             CEEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCSGGGGTCCCSC
T ss_pred             eEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHHHHHHhhh
Confidence            236677765  589999999777777766544 467888888873 3 78999999999988754

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=100.00  E-value=2.1e-34  Score=290.79  Aligned_cols=321  Identities=20%  Similarity=0.217  Sum_probs=237.6

Q ss_pred             HHHcCCeEEcCCcEEEEeCCCCEEEeCCCc-EEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCC
Q 014997           56 YKEKGIEMIYQDPVTSIDIEKQTLITNSGK-LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK  134 (414)
Q Consensus        56 ~~~~~i~~~~~~~V~~id~~~~~V~~~~g~-~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~  134 (414)
                      +++.+|+++.+ .+..+++....|.+.+|+ ++.||+||||||++|+. |.++|.+..    ..+.   ..+......++
T Consensus       118 ~~~~~v~~~~g-~a~~~~~~~v~v~~~~g~~~~~~d~lviATGs~p~~-p~i~G~~~~----~~~~---~~~~~~~~~~~  188 (483)
T 3dgh_A          118 LRDKKVEYING-LGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRY-PDIPGAVEY----GITS---DDLFSLDREPG  188 (483)
T ss_dssp             HHHTTCEEECS-EEEEEETTEEEEECTTCCEEEEEEEEEECCCEEECC-CSSTTHHHH----CBCH---HHHTTCSSCCC
T ss_pred             HHhCCCEEEEe-EEEEccCCEEEEEeCCCeEEEEcCEEEEeCCCCcCC-CCCCCcccc----cCcH---HHHhhhhhcCC
Confidence            56679999986 677788777777777774 79999999999999864 444443211    1122   23333234578


Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEe
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL  214 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~  214 (414)
                      +++|||+|++|+|+|..|+++|.+|+++++. .+++ .+++++.+.+.+.+++.||++++++.+++++..+++.+ .+.+
T Consensus       189 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~l~-~~d~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~-~v~~  265 (483)
T 3dgh_A          189 KTLVVGAGYIGLECAGFLKGLGYEPTVMVRS-IVLR-GFDQQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKL-LVKY  265 (483)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESS-CSST-TSCHHHHHHHHHHHHHTTCCEEETEEEEEEEECTTSCE-EEEE
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCEEEEEeCC-CCCc-ccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCcE-EEEE
Confidence            9999999999999999999999999999884 5665 57999999999999999999999999999986545543 4566


Q ss_pred             CCCc-----EEecCEEEEccCCcCCChhh--hhcCCcccCCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHH
Q 014997          215 EDGS-----TIDADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVD  287 (414)
Q Consensus       215 ~~g~-----~i~~D~vi~a~G~~p~~~~l--~~~gl~~~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~  287 (414)
                      .++.     ++++|.|++|+|++|+++++  +++|++.++|+|.||++++|+.|+|||+|||+....         ..+.
T Consensus       266 ~~~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~---------~~~~  336 (483)
T 3dgh_A          266 KNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQKDKIPVDSQEATNVANIYAVGDIIYGKP---------ELTP  336 (483)
T ss_dssp             EETTTCCEEEEEESEEEECSCEEECCGGGTGGGTTCCCBTTBBCCCTTCBCSSTTEEECSTTBTTSC---------CCHH
T ss_pred             ecCCCCceeEEEcCEEEECcccccCcCcCCchhcCccccCCEEEECcCCccCCCCEEEEEcccCCCC---------ccHH
Confidence            5543     79999999999999999876  788988766889999999999999999999984211         1566


Q ss_pred             HHHHHHHHHHHHHhcCCCC--CCCCCCceeeeccCCCCCCcceeeeEeecCCCc---------EE-EE----c-------
Q 014997          288 HARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE---------TI-EI----G-------  344 (414)
Q Consensus       288 ~A~~~a~~aa~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~---------~~-~~----~-------  344 (414)
                      .|..||+.+|+||++....  .+..+|+.   .|..+      .+..+|..+.+         .. ..    .       
T Consensus       337 ~A~~~g~~aa~~i~g~~~~~~~~~~~p~~---~~~~p------~~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~~  407 (483)
T 3dgh_A          337 VAVLAGRLLARRLYGGSTQRMDYKDVATT---VFTPL------EYACVGLSEEDAVKQFGADEIEVFHGYYKPTEFFIPQ  407 (483)
T ss_dssp             HHHHHHHHHHHHHHSCCCCCCCCTTCCEE---ECSSS------EEEEEECCHHHHHHHHCGGGEEEEEEECCCGGGTTTT
T ss_pred             HHHHHHHHHHHHHcCCCCCcCCCCCCCEE---EECCC------ccEEEeCCHHHHHhhCCCCCEEEEEEeecchhhhhhc
Confidence            7999999999999975432  35556654   23221      13445543210         11 10    0       


Q ss_pred             -CCCCcEEEEEEe---CCEEEEEEeecCChHHhhHH-HHHHhCCCCCChh-h-hcCCCcHHHHHHHHhc
Q 014997          345 -NFDPKIATFWID---SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDKA-K-LQQASSVEEALEIARA  406 (414)
Q Consensus       345 -~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~~-~-~~~~~~~~~~~~~~~~  406 (414)
                       ....-|.++.++   +++|+|+++++.++.++... ..+|+.+.+++.- . +..||+++|++..+..
T Consensus       408 ~~~~~~~~k~i~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~  476 (483)
T 3dgh_A          408 KSVRYCYLKAVAERHGDQRVYGLHYIGPVAGEVIQGFAAALKSGLTINTLINTVGIHPTTAEEFTRLAI  476 (483)
T ss_dssp             CCCTTCEEEEEEESSTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGGCCC
T ss_pred             cCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHHHHh
Confidence             011236777664   48999999977777776544 4467888888873 3 6899999999887653

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=100.00  E-value=3e-34  Score=290.05  Aligned_cols=324  Identities=20%  Similarity=0.251  Sum_probs=236.8

Q ss_pred             HHHHcCCeEEcCCcEEEEeCCCCEEEeCCC--cEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcC
Q 014997           55 WYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK  132 (414)
Q Consensus        55 ~~~~~~i~~~~~~~V~~id~~~~~V~~~~g--~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~  132 (414)
                      .+++.+|+++.+ ++..+++....|.+.+|  .++.||+||||||++|..++.++|.+...    .+   +..+......
T Consensus       113 ~~~~~~V~~i~g-~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~~i~G~~~~~----~~---~~~~~~~~~~  184 (488)
T 3dgz_A          113 QLQDRKVKYFNI-KASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRYPTQVKGALEYG----IT---SDDIFWLKES  184 (488)
T ss_dssp             HHHHTTCEEECC-EEEESSSSEEEEECTTSCEEEEEEEEEEECCCEEECCCSSCBTHHHHC----BC---HHHHTTCSSC
T ss_pred             HHHhCCCEEEEE-EEEEccCCeEEEEeCCCceEEEECCEEEEcCCCCCCCCCCCCCccccc----Cc---HHHHHhhhhc
Confidence            355679999875 67777777667777777  47999999999999987433255532111    12   2333333345


Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEE
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV  212 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v  212 (414)
                      +++++|||+|++|+|+|..|+++|.+|+++++. .+++ .+++++.+.+.+.+++.||++++++.++++...+++.+ .+
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~-~~l~-~~d~~~~~~l~~~l~~~gv~~~~~~~v~~i~~~~~~~~-~v  261 (488)
T 3dgz_A          185 PGKTLVVGASYVALECAGFLTGIGLDTTVMMRS-IPLR-GFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQL-QV  261 (488)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSST-TSCHHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCE-EE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEcC-cccc-cCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcE-EE
Confidence            789999999999999999999999999999986 4555 57999999999999999999999999999986444433 34


Q ss_pred             EeCC---Cc--EEecCEEEEccCCcCCChh--hhhcCCccc--CCCEEEcCCCCCCCCcEEEEccccccCCccCCccccc
Q 014997          213 KLED---GS--TIDADTIVIGIGAKPTVSP--FERVGLNSS--VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARV  283 (414)
Q Consensus       213 ~~~~---g~--~i~~D~vi~a~G~~p~~~~--l~~~gl~~~--~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~  283 (414)
                      .+.+   |+  ++++|.|++|+|++|++++  ++++++..+  +|+|.||+++||+.|+|||+|||+....         
T Consensus       262 ~~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~---------  332 (488)
T 3dgz_A          262 TWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEATSVPHIYAIGDVAEGRP---------  332 (488)
T ss_dssp             EEEETTTTEEEEEEESEEEECSCEEESCGGGTGGGGTCCBCSSSCCBCCCTTSBCSSTTEEECGGGBTTCC---------
T ss_pred             EEEeCCCCeeEEEECCEEEEcccCCcccCcCCccccCcEecCCCCeEeECCCCccCCCCEEEeEEecCCCC---------
Confidence            4433   54  4899999999999999987  678888875  6789999999999999999999985211         


Q ss_pred             ccHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeeeccCCCCCCcceeeeEeecCCCc---------E-EEEc-------
Q 014997          284 EHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE---------T-IEIG-------  344 (414)
Q Consensus       284 ~~~~~A~~~a~~aa~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~---------~-~~~~-------  344 (414)
                      ..+..|..||+.+|.||++....  .+..+|+..   |..+      .+..+|....+         . +...       
T Consensus       333 ~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~---~~~p------~~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~  403 (488)
T 3dgz_A          333 ELTPTAIKAGKLLAQRLFGKSSTLMDYSNVPTTV---FTPL------EYGCVGLSEEEAVALHGQEHVEVYHAYYKPLEF  403 (488)
T ss_dssp             CCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEEE---CSSS------EEEEEECCHHHHHHHHCGGGEEEEEEECCCHHH
T ss_pred             cchhHHHHHHHHHHHHHcCCCCccCCCCCCCEEE---ECCC------CeEEEeCCHHHHHhhCCCCcEEEEEccccchhh
Confidence            15667999999999999975432  355567643   3221      14445543210         1 1110       


Q ss_pred             -----CCCCcEEEEEEe---CCEEEEEEeecCChHHhhHH-HHHHhCCCCCChh-h-hcCCCcHHHHHHHHhcC
Q 014997          345 -----NFDPKIATFWID---SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDKA-K-LQQASSVEEALEIARAA  407 (414)
Q Consensus       345 -----~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~  407 (414)
                           +...-+.++.++   +++|+|+++++.++.++... ..+|+.+.+++.- . +..||+++|++..+...
T Consensus       404 ~~~~~~~~~g~~k~i~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~  477 (488)
T 3dgz_A          404 TVADRDASQCYIKMVCMREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMQTVGIHPTCSEEVVKLHIS  477 (488)
T ss_dssp             HHTTCCCTTCEEEEEEESSTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSTHHHHTCCEE
T ss_pred             hhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccccCCCChHHHHHHHHHH
Confidence                 002236677665   49999999977777776544 4467889888883 2 78999999999887543

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=100.00  E-value=3.9e-34  Score=289.28  Aligned_cols=318  Identities=17%  Similarity=0.156  Sum_probs=234.4

Q ss_pred             CCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCCeEEEE
Q 014997           60 GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVV  139 (414)
Q Consensus        60 ~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVv  139 (414)
                      +++++.+ ++.-.  +.++|.+++++++.||+||||||++|.. |.+++...+++++      +..+......+++++||
T Consensus       111 ~~~~~~g-~a~~~--~~~~v~~~~~~~~~~d~lViATGs~p~~-p~~~~~~~~~v~t------~~~~~~~~~~~k~vvVi  180 (492)
T 3ic9_A          111 EQDKIRG-FAKFL--DEHTLQVDDHSQVIAKRIVIATGSRPNY-PEFLAAAGSRLLT------NDNLFELNDLPKSVAVF  180 (492)
T ss_dssp             GGGEEES-CEEEE--ETTEEEETTTEEEEEEEEEECCCEECCC-CHHHHTTGGGEEC------HHHHTTCSSCCSEEEEE
T ss_pred             CeeEEEE-EEEEe--cCCEEEEcCCcEEEeCEEEEccCCCCcC-CCCCCccCCcEEc------HHHHhhhhhcCCeEEEE
Confidence            4555554 34333  3568888888899999999999999874 4333333334443      23333333468999999


Q ss_pred             CCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeC--CC
Q 014997          140 GGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--DG  217 (414)
Q Consensus       140 GgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~--~g  217 (414)
                      |+|++|+|+|..|+++|.+|+++++.+++++ .+++++.+.+.+.+++. |++++++.+++++.++++ + .+.+.  +|
T Consensus       181 GgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~-~~d~~~~~~l~~~l~~~-V~i~~~~~v~~i~~~~~~-v-~v~~~~~~G  256 (492)
T 3ic9_A          181 GPGVIGLELGQALSRLGVIVKVFGRSGSVAN-LQDEEMKRYAEKTFNEE-FYFDAKARVISTIEKEDA-V-EVIYFDKSG  256 (492)
T ss_dssp             SSCHHHHHHHHHHHHTTCEEEEECCTTCCTT-CCCHHHHHHHHHHHHTT-SEEETTCEEEEEEECSSS-E-EEEEECTTC
T ss_pred             CCCHHHHHHHHHHHHcCCeEEEEEECCcccc-cCCHHHHHHHHHHHhhC-cEEEECCEEEEEEEcCCE-E-EEEEEeCCC
Confidence            9999999999999999999999999999986 58999999999999988 999999999999865443 3 35553  67


Q ss_pred             --cEEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEc-CCCCCCCCcEEEEccccccCCccCCcccccccHHHHHH
Q 014997          218 --STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVD-GQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ  291 (414)
Q Consensus       218 --~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd-~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~  291 (414)
                        ++++||.|++|+|++|++++  ++++|++.+ +|+|.|| +++||+.|+|||+|||+..+.          .+..|..
T Consensus       257 ~~~~i~~D~Vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~~t~~~~IyA~GD~~~~~~----------~~~~A~~  326 (492)
T 3ic9_A          257 QKTTESFQYVLAATGRKANVDKLGLENTSIELDKKNSPLFDELTLQTSVDHIFVAGDANNTLT----------LLHEAAD  326 (492)
T ss_dssp             CEEEEEESEEEECSCCEESCSSSCGGGSCCCBCTTCCBCCCTTTCBCSSTTEEECGGGGTSSC----------SHHHHHH
T ss_pred             ceEEEECCEEEEeeCCccCCCCCChhhcCCEECCCCCEeECcccccCCCCCEEEEEecCCCCc----------cHHHHHH
Confidence              68999999999999999988  788899875 6789999 899999999999999997542          4667999


Q ss_pred             HHHHHHHHHhcCC-CC--CCCCCCceeeeccCCCCCCcceeeeEeecCCCc-----------EEEEc-------------
Q 014997          292 SAQHCIKALLSAQ-TH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-----------TIEIG-------------  344 (414)
Q Consensus       292 ~a~~aa~~i~~~~-~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-----------~~~~~-------------  344 (414)
                      ||+.||.||++.. ..  .+..+|+   ..|..+      .+..+|..+.+           -+..+             
T Consensus       327 ~g~~aa~~i~~~~~~~~~~~~~~p~---~~~~~p------~~a~vGlte~~a~~~~g~~~g~~~~~~~~~~~~~~~a~~~  397 (492)
T 3ic9_A          327 DGKVAGTNAGAYPVIAQGQRRAPLS---VVFTEP------QVASVGLSLRQIEDLYADQDAANYVVGQVSFEGQGRSRVM  397 (492)
T ss_dssp             HHHHHHHHHHHTTSCCEECCCCCEE---EECSSS------EEEEEESCHHHHHHHCSCSSSCCEEEEEEEGGGCHHHHHT
T ss_pred             HHHHHHHHHcCCCCCcccCCCCCcE---EEECCC------CeEEecCCHHHHHhccCccCCccEEEEEEEeccchhhhhc
Confidence            9999999999732 22  2333443   233221      13444543211           01100             


Q ss_pred             CCCCcEEEEEEe--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCChh--hhcCCCcHHHHHHHHhcCCCc
Q 014997          345 NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDKA--KLQQASSVEEALEIARAALPV  410 (414)
Q Consensus       345 ~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  410 (414)
                      +...-+.++.++  +++|+|+++++.++.++... ..+|+.+.+++.-  .+..||++.|++.+|++.+.+
T Consensus       398 ~~~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~a~~~~~~  468 (492)
T 3ic9_A          398 GKNKGLLNVYADRTSGEFLGAEMFGPAAEHIGHLLAWARQQQMTVQAMLTMPFYHPVIEEGLRTALRDAQQ  468 (492)
T ss_dssp             TCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHTTSCCCTTCTHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCCCCCCChHHHHHHHHHHHHH
Confidence            011236677765  59999999977778777554 4567888888872  268999999999999876543

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=100.00  E-value=7.9e-34  Score=288.83  Aligned_cols=325  Identities=20%  Similarity=0.235  Sum_probs=235.8

Q ss_pred             HHHHcCCeEEcCCcEEEEeCCCCEEEeCCCc--EEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcC
Q 014997           55 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK  132 (414)
Q Consensus        55 ~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~--~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~  132 (414)
                      .+++.+|+++.+ ++..+++....|.+.+|+  ++.||+||||||++|+. |.++|...    ...+..   .+......
T Consensus       139 ~~~~~gV~~i~g-~a~~~d~~~v~v~~~~g~~~~i~~d~lViATGs~p~~-p~i~G~~~----~~~t~~---~~~~l~~~  209 (519)
T 3qfa_A          139 ALREKKVVYENA-YGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRY-LGIPGDKE----YCISSD---DLFSLPYC  209 (519)
T ss_dssp             HHHHTTCEEECS-EEEEEETTEEEEECTTCCCCEEEEEEEEECCCEEECC-CCCTTHHH----HCBCHH---HHTTCSSC
T ss_pred             HHHhCCCEEEEE-EEEEeeCCEEEEEcCCCCEEEEECCEEEEECCCCcCC-CCCCCccC----ceEcHH---HHhhhhhc
Confidence            345679999986 788888887788877775  79999999999999864 44444211    112222   33322345


Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCC---CcE
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD---GRV  209 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~~~  209 (414)
                      +++++|||+|++|+|+|..|+++|.+||++++. .+++ .+++++.+.+.+.+++.||++++++.++++...++   +.+
T Consensus       210 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~-~~l~-~~d~~~~~~~~~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~  287 (519)
T 3qfa_A          210 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLR-GFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRL  287 (519)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSST-TSCHHHHHHHHHHHHHTTCEEEESEEEEEEEEEECCTTCEE
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecc-cccc-cCCHHHHHHHHHHHHHCCCEEEeCCeEEEEEEccCCCCceE
Confidence            688999999999999999999999999999985 6665 58999999999999999999999988887765322   222


Q ss_pred             -EEEEeCCC-c--EEecCEEEEccCCcCCChh--hhhcCCccc--CCCEEEcCCCCCCCCcEEEEccccccCCccCCccc
Q 014997          210 -AAVKLEDG-S--TIDADTIVIGIGAKPTVSP--FERVGLNSS--VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA  281 (414)
Q Consensus       210 -~~v~~~~g-~--~i~~D~vi~a~G~~p~~~~--l~~~gl~~~--~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~  281 (414)
                       ..+...+| +  ++++|.|++++|++|++++  ++++|++.+  +|+|.||+++||+.|+|||+|||+....       
T Consensus       288 ~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~~G~I~Vd~~~~Ts~~~IyA~GD~~~g~~-------  360 (519)
T 3qfa_A          288 RVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKV-------  360 (519)
T ss_dssp             EEEEEESSSSCEEEEEESEEEECSCEEESCSSSCSTTTTCCCCTTTCCBCCCTTSBCSSTTEEECGGGBSSSC-------
T ss_pred             EEEEEECCCcEEEEEECCEEEEecCCcccCCCCChhhcCcEEcCCCCeEeeCCCCccCCCCEEEEEeccCCCC-------
Confidence             23334555 2  5789999999999999886  678888874  5789999999999999999999984211       


Q ss_pred             ccccHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeeeccCCCCCCcceeeeEeecCCCc---------EEE-E---c--
Q 014997          282 RVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE---------TIE-I---G--  344 (414)
Q Consensus       282 ~~~~~~~A~~~a~~aa~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~---------~~~-~---~--  344 (414)
                        ..+..|..||+.+|+||++....  .+..+|+.   .|..+      .+..+|..+.+         ... .   .  
T Consensus       361 --~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~---~~~~p------~~a~vGlte~~a~~~~~~~~~~~~~~~~~~~  429 (519)
T 3qfa_A          361 --ELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTT---VFTPL------EYGACGLSEEKAVEKFGEENIEVYHSYFWPL  429 (519)
T ss_dssp             --CCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEE---ECSSS------CEEEEECCHHHHHHHHCGGGEEEEEEEECCH
T ss_pred             --ccHHHHHHHHHHHHHHHcCCCCccCCCCcCcEE---EECCC------ceEEecCCHHHHHhhCCCCCEEEEEEeccch
Confidence              25677999999999999975432  34445552   33322      14455543211         110 0   0  


Q ss_pred             -------CCCCcEEEEEEe---CCEEEEEEeecCChHHhhH-HHHHHhCCCCCChh--hhcCCCcHHHHHHHHhcCC
Q 014997          345 -------NFDPKIATFWID---SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDKA--KLQQASSVEEALEIARAAL  408 (414)
Q Consensus       345 -------~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~-~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  408 (414)
                             ....-|.++.++   +++|+|+++++.++.++.. +..+|+.+.+++.-  .+..||++.|++..+....
T Consensus       430 ~~~~~~~~~~~g~~Kli~~~~~~~~ilGa~i~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~E~~~~~~~~~  506 (519)
T 3qfa_A          430 EWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVFTTLSVTK  506 (519)
T ss_dssp             HHHTTTCCTTTEEEEEEEETTTTCEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCTTCGGGGGGGCCCBT
T ss_pred             hhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccccCCCChHHHHHHHHhhh
Confidence                   011336777765   4899999997777766654 44567889888883  2789999999998876543

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=100.00  E-value=1.9e-33  Score=283.96  Aligned_cols=321  Identities=22%  Similarity=0.303  Sum_probs=240.8

Q ss_pred             hHHHHcCCeEEcCCcEEEEeCCCCEEEeC-CCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcC
Q 014997           54 EWYKEKGIEMIYQDPVTSIDIEKQTLITN-SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK  132 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~~id~~~~~V~~~-~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~  132 (414)
                      .++++.+++++.+ ++..++.  +.+.+. +++.+.||+||||||++|...|.++|.+  .+.   +..   .+......
T Consensus       122 ~~~~~~~v~~~~g-~~~~i~~--~~v~v~~~~~~~~~d~lviAtG~~p~~~p~i~G~~--~~~---~~~---~~~~~~~~  190 (484)
T 3o0h_A          122 EGLQNSNVHIYES-RAVFVDE--HTLELSVTGERISAEKILIATGAKIVSNSAIKGSD--LCL---TSN---EIFDLEKL  190 (484)
T ss_dssp             HHHHHTTCEEEES-CEEEEET--TEEEETTTCCEEEEEEEEECCCEEECCC--CBTGG--GSB---CTT---TGGGCSSC
T ss_pred             HHHHhCCCEEEEe-EEEEeeC--CEEEEecCCeEEEeCEEEEccCCCcccCCCCCCcc--ccc---cHH---HHHhHHhc
Confidence            3456679999986 7777764  577776 7788999999999999886234445432  111   111   22222245


Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEE
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV  212 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v  212 (414)
                      +++++|||+|++|+|+|..|++.|.+|+++++.+++++ .+++++.+.+.+.+++.||++++++.|++++.++++ + .+
T Consensus       191 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~-~~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~-v-~v  267 (484)
T 3o0h_A          191 PKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILR-NFDYDLRQLLNDAMVAKGISIIYEATVSQVQSTENC-Y-NV  267 (484)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHHTCEEESSCCEEEEEECSSS-E-EE
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCcccc-ccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEeeCCE-E-EE
Confidence            79999999999999999999999999999999999887 489999999999999999999999999999865333 3 68


Q ss_pred             EeCCCcEEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHH
Q 014997          213 KLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHA  289 (414)
Q Consensus       213 ~~~~g~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A  289 (414)
                      .+.+|+++++|.||+|+|++|+..+  +++.|++.+ +|+|.||++++|+.|+|||+|||+..+.          .+..|
T Consensus       268 ~~~~g~~i~aD~Vi~A~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~~~----------~~~~A  337 (484)
T 3o0h_A          268 VLTNGQTICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMTTNVSHIWAVGDVTGHIQ----------LTPVA  337 (484)
T ss_dssp             EETTSCEEEESEEEECCCEEECCTTCCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECGGGGTSCC----------CHHHH
T ss_pred             EECCCcEEEcCEEEEeeCCCcCCCCCChhhcCceECCCCCEeECCCCCCCCCCEEEEEecCCCCc----------CHHHH
Confidence            8899999999999999999999887  678888875 5779999999999999999999987432          56679


Q ss_pred             HHHHHHHHHHHhcCCCC--CCCCCCceeeeccCCCCCCcceeeeEeecCCCc------EEEEc-------------CCCC
Q 014997          290 RQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE------TIEIG-------------NFDP  348 (414)
Q Consensus       290 ~~~a~~aa~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~------~~~~~-------------~~~~  348 (414)
                      ..+|+.+|+||++....  .+..+|+.   .|..+      .+..+|..+.+      .+..+             +...
T Consensus       338 ~~~g~~aa~~i~~~~~~~~~~~~~p~~---~~~~p------~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~  408 (484)
T 3o0h_A          338 IHDAMCFVKNAFENTSTTPDYDLITTA---VFSQP------EIGTVGLSEEDALHRYKRVEIYRTVFRPMRNVLSGSPEK  408 (484)
T ss_dssp             HHHHHHHHHHHHC---CCCCCTTCCEE---ECCSS------CEEEEECCHHHHHHHCSEEEEEEEEECCHHHHHHTCCCC
T ss_pred             HHHHHHHHHHHcCCCCCcCCCCCCcEE---EECCC------CEEEeeCCHHHHHHcCCCEEEEEecCCcchhhccCCCCc
Confidence            99999999999975433  34555653   34322      14556654321      01100             0122


Q ss_pred             cEEEEEEe--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCCh-hh-hcCCCcHHHHHHHHhcC
Q 014997          349 KIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDK-AK-LQQASSVEEALEIARAA  407 (414)
Q Consensus       349 ~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~  407 (414)
                      -+.++.++  +++|+|+.+++..+.++... ..+|+.+.+++. .. +..||++.|++.+++..
T Consensus       409 ~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~  472 (484)
T 3o0h_A          409 MFMKLVVDGESRIVVGAHVLGENAGEIAQLIGISLKGKLTKDIFDKTMAVHPTMSEELVTMYKP  472 (484)
T ss_dssp             EEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCSGGGGGCCCSC
T ss_pred             EEEEEEEECCCCEEEEEEEECcCHHHHHHHHHHHHHCCCCHHHHhccccCCCChHHHHHHHhhh
Confidence            36677665  58999999977777776554 446788888887 33 78999999999988754

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=100.00  E-value=7.6e-33  Score=286.56  Aligned_cols=322  Identities=17%  Similarity=0.220  Sum_probs=231.3

Q ss_pred             HHHcCCeEEcCCcEEEEeCCCCEEEeCCC--cEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCC
Q 014997           56 YKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA  133 (414)
Q Consensus        56 ~~~~~i~~~~~~~V~~id~~~~~V~~~~g--~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~  133 (414)
                      +.+.+|+++.+ .+..+++....+.+.+|  +++.||+||||||++|+. |.++|.+.. ..   +   ...+......+
T Consensus       216 ~~~~~V~~~~~-~~~~~~~~~v~v~~~~g~~~~~~~d~lviAtGs~p~~-p~i~G~~~~-~~---~---~~~~~~~~~~~  286 (598)
T 2x8g_A          216 LRDNQVTYLNA-KGRLISPHEVQITDKNQKVSTITGNKIILATGERPKY-PEIPGAVEY-GI---T---SDDLFSLPYFP  286 (598)
T ss_dssp             HHHTTCEEECS-EEEEEETTEEEEECTTCCEEEEEEEEEEECCCEEECC-CSSTTHHHH-CE---E---HHHHTTCSSCC
T ss_pred             HhhCCcEEEEE-EEEEcCCCEEEEEeCCCCeEEEEeCEEEEeCCCCCCC-CCCCCcccc-eE---c---HHHHhhCccCC
Confidence            45678999875 67778876656666677  469999999999999864 444442211 11   1   22232222457


Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEec-----CC--
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG-----SD--  206 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~-----~~--  206 (414)
                      ++++|||||++|+|+|..|+++|.+||++++. .+++ .+++++.+.+.+.+++.||++++++.++++...     ++  
T Consensus       287 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~l~-~~d~~~~~~~~~~l~~~gv~i~~~~~v~~v~~~~~~~~~~~~  364 (598)
T 2x8g_A          287 GKTLVIGASYVALECAGFLASLGGDVTVMVRS-ILLR-GFDQQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNK  364 (598)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSST-TSCHHHHHHHHHHHHHTTCEEEETEEEEEEEEEECCBTTTTB
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEECC-cCcC-cCCHHHHHHHHHHHHhCCCEEEECCeEEEEEeccccccccCC
Confidence            89999999999999999999999999999987 5665 488999999999999999999999988888532     11  


Q ss_pred             -CcE-EEEEeCCCcEEe--cCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCc
Q 014997          207 -GRV-AAVKLEDGSTID--ADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR  279 (414)
Q Consensus       207 -~~~-~~v~~~~g~~i~--~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~  279 (414)
                       +.+ ..+.+.+|++++  +|.||+|+|++|++++  ++.+|++.+ +|+|.||++++|+.|+|||+|||+....     
T Consensus       365 ~~~~~v~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~ts~~~VyA~GD~~~~~~-----  439 (598)
T 2x8g_A          365 PGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTDDEQTTVSNVYAIGDINAGKP-----  439 (598)
T ss_dssp             CCEEEEEEEETTSCEEEEEESEEEECSCEEECGGGTBCGGGCCCBCTTSCBCCCTTSBCSSTTEEECGGGBTTSC-----
T ss_pred             CceEEEEEEeCCCcEEeccCCEEEEEeCCccccCccCchhcCceECCCCcEEeCCCCcCCCCCEEEEeeecCCCC-----
Confidence             333 233456787655  9999999999999987  467888875 5789999999999999999999965321     


Q ss_pred             ccccccHHHHHHHHHHHHHHHhcCCC--CCCCCCCceeeeccCCCCCCcceeeeEeecCCCc---------EEEE-----
Q 014997          280 TARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE---------TIEI-----  343 (414)
Q Consensus       280 ~~~~~~~~~A~~~a~~aa~~i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~---------~~~~-----  343 (414)
                          ..+..|..+|+.+|.||++...  ..|..+|+.+   |...      .+..+|....+         ....     
T Consensus       440 ----~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~~---~~~~------~~a~vGl~e~~a~~~~~~~~~~~~~~~~~  506 (598)
T 2x8g_A          440 ----QLTPVAIQAGRYLARRLFAGATELTDYSNVATTV---FTPL------EYGACGLSEEDAIEKYGDKDIEVYHSNFK  506 (598)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHHCCCCCCCCTTCCEEE---CSSS------CEEEEECCHHHHHHHHCGGGEEEEEEEEC
T ss_pred             ----ccHHHHHHhHHHHHHHHhcCCCcccCCCCCcEEE---ECCC------ceEEEeCCHHHHHhhCCCCcEEEEEEecc
Confidence                2566799999999999997543  2355566543   2221      13344533210         1110     


Q ss_pred             -------cCC-CCcEEEEEEe---CCEEEEEEeecCChHHhhH-HHHHHhCCCCCCh-h-hhcCCCcHHHHHHHHhc
Q 014997          344 -------GNF-DPKIATFWID---SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK-A-KLQQASSVEEALEIARA  406 (414)
Q Consensus       344 -------~~~-~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~-~~~l~~~~~~~~~-~-~~~~~~~~~~~~~~~~~  406 (414)
                             +.. ..-+.++.++   +++|+|+++++..+.++.. +..+|+.+.+++. . .+..||++.|++..++.
T Consensus       507 ~~~~~~~~~~~~~~~~kli~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~  583 (598)
T 2x8g_A          507 PLEWTVAHREDNVCYMKLVCRKSDNMRVLGLHVLGPNAGEITQGYAVAIKMGATKADFDRTIGIHPTCSETFTTLHV  583 (598)
T ss_dssp             CTHHHHTTCCSSCEEEEEEEETTTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCSGGGGGSCCC
T ss_pred             chhHHhhcCCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhccccCCCHHHHHHHHHH
Confidence                   001 1236677665   6999999986666766554 4456788888887 2 37899999999988875

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=99.98  E-value=5.9e-32  Score=268.91  Aligned_cols=278  Identities=20%  Similarity=0.197  Sum_probs=199.6

Q ss_pred             CCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCCCEEEe
Q 014997            2 ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLIT   81 (414)
Q Consensus         2 ~~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~   81 (414)
                      ++.+||||+++++++|. |.|+. +..+ ....+++           .....+++++.||+++.+ +|++||+++++|++
T Consensus        26 ~~~~VtlI~~~~~~~~~-p~l~~-v~~g-~~~~~~i-----------~~~~~~~~~~~gv~~i~~-~v~~Id~~~~~V~~   90 (430)
T 3hyw_A           26 PDLKITLISDRPYFGFT-PAFPH-LAMG-WRKFEDI-----------SVPLAPLLPKFNIEFINE-KAESIDPDANTVTT   90 (430)
T ss_dssp             TTCEEEEECSSSEEECG-GGHHH-HHHT-CSCGGGS-----------EEESTTTGGGGTEEEECS-CEEEEETTTTEEEE
T ss_pred             cCCeEEEEcCCCCCccC-ccHHH-HhcC-CCCHHHh-----------hhcHHHHHHHCCcEEEEe-EEEEEECCCCEEEE
Confidence            56799999999998884 77664 5444 2222332           233456677889999985 89999999999999


Q ss_pred             CCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhc---CCCeEEEECCCh------HHHHHH---
Q 014997           82 NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE---KAKKVVVVGGGY------IGMEVA---  149 (414)
Q Consensus        82 ~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~---~~~~vvVvGgG~------~g~e~A---  149 (414)
                      ++|++++||+||||||+++. ++ ++|.. ++.+.+++.+++.++++.+.   ..+.++|+|++.      .+.|+|   
T Consensus        91 ~~g~~i~YD~LViAtG~~~~-~~-i~G~~-e~~~~~~~~~~a~~~~~~l~~~~~~~~~vv~gg~~gve~~~~~~e~a~~~  167 (430)
T 3hyw_A           91 QSGKKIEYDYLVIATGPKLV-FG-AEGQE-ENSTSICTAEHALETQKKLQELYANPGPVVIGAIPGVSCFGPAYEFALML  167 (430)
T ss_dssp             TTCCEEECSEEEECCCCEEE-CC-SBTHH-HHSCCCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHHHHHHHH
T ss_pred             CCCCEEECCEEEEeCCCCcc-CC-ccCcc-cCcCCcccHHHHHHHHHHHHhhccCCceEEEeCCCcEEEhHHHHHHHHHH
Confidence            99999999999999999753 33 44432 34566778888877765542   345566666553      233443   


Q ss_pred             -HHHHhCC----CcEEEEeeCCcccc--cccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCC--cEE
Q 014997          150 -AAAVGWK----LDTTIIFPENHLLQ--RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STI  220 (414)
Q Consensus       150 -~~l~~~g----~~Vtlv~~~~~~l~--~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g--~~i  220 (414)
                       ..+.+++    .+|++++..+.+..  ....+...+.+++.++++||++++++.|++++.+  + + .+...+|  +++
T Consensus       168 ~~~l~~~g~~~~v~v~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~GV~~~~~~~v~~v~~~--~-~-~~~~~~g~~~~i  243 (430)
T 3hyw_A          168 HYELKKRGIRYKVPMTFITSEPYLGHFGVGGIGASKRLVEDLFAERNIDWIANVAVKAIEPD--K-V-IYEDLNGNTHEV  243 (430)
T ss_dssp             HHHHHHTTCGGGCCEEEECSSSSTTCTTTTCSTTHHHHHHHHHHHTTCEEECSCEEEEECSS--E-E-EEECTTSCEEEE
T ss_pred             HHHHHHhcccccceeeeecccchhhhccchhhHHHHHHHHHHHHhCCeEEEeCceEEEEeCC--c-e-EEEeeCCCceEe
Confidence             3455555    46888887765532  2245677888999999999999999999999632  2 1 2333333  579


Q ss_pred             ecCEEEEccCCcCCChhhhhcCCc--cc-CCCEEEcCCCC-CCCCcEEEEccccccCCccCCc--ccccccHHHHHHHHH
Q 014997          221 DADTIVIGIGAKPTVSPFERVGLN--SS-VGGIQVDGQFR-TRMPGIFAIGDVAAFPLKMYDR--TARVEHVDHARQSAQ  294 (414)
Q Consensus       221 ~~D~vi~a~G~~p~~~~l~~~gl~--~~-~g~i~vd~~~~-t~~~~IyA~GD~a~~~~~~~~~--~~~~~~~~~A~~~a~  294 (414)
                      ++|++++++|.+|+ +++..+++.  .+ +++|.||++|| |++|||||+|||+..+......  .......+.|.+||+
T Consensus       244 ~~d~vi~~~G~~~~-~~~~~~~~~l~~~~~g~i~vd~~lq~t~~~~IfAiGD~a~~p~~~~~~~~~~~pk~a~~A~~qg~  322 (430)
T 3hyw_A          244 PAKFTMFMPSFQGP-EVVASAGDKVANPANKMVIVNRCFQNPTYKNIFGVGVVTAIPPIEKTPIPTGVPKTGMMIEQMAM  322 (430)
T ss_dssp             ECSEEEEECEEECC-HHHHTTCTTTBCTTTCCBCCCTTSBCSSSTTEEECSTTBCCCCSSCCSSCCCCCCCHHHHHHHHH
T ss_pred             ecceEEEeccCCCc-hHHHhcccccccCCceEEEecccccCCCCCCEEEeccEEecCCcccCcCcCccchHHHHHHHHHH
Confidence            99999999999998 677766543  33 45699999999 7999999999999987532111  011235667999999


Q ss_pred             HHHHHHhc
Q 014997          295 HCIKALLS  302 (414)
Q Consensus       295 ~aa~~i~~  302 (414)
                      .+|+||+.
T Consensus       323 ~~A~Ni~~  330 (430)
T 3hyw_A          323 AVAHNIVN  330 (430)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999985

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=99.97  E-value=1.9e-31  Score=262.89  Aligned_cols=273  Identities=18%  Similarity=0.196  Sum_probs=203.6

Q ss_pred             CCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCCCEEEe
Q 014997            2 ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLIT   81 (414)
Q Consensus         2 ~~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~   81 (414)
                      ++.+||||++++++ |..| +++.++.+ ....+++            .++.+++.++||+++.+ +|+.||++++.|++
T Consensus        26 ~~~~Vtlie~~~~~-~~~p-~~~~v~~g-~~~~~~~------------~~~~~~~~~~gv~~i~~-~v~~id~~~~~v~~   89 (401)
T 3vrd_B           26 PSIEVTLIEPNETY-YTCY-MSNEVIGG-DRELASL------------RVGYDGLRAHGIQVVHD-SALGIDPDKKLVKT   89 (401)
T ss_dssp             TTSEEEEECSCSSE-ECST-THHHHHHT-SSCGGGG------------EECSHHHHHTTCEEECS-CEEEEETTTTEEEE
T ss_pred             cCCeEEEEeCCCCC-CCcc-CHHHHhcC-CCCHHHH------------hhCHHHHHHCCCEEEEe-EEEEEEccCcEEEe
Confidence            45689999776653 3334 44446555 2233332            35667888999999985 89999999999999


Q ss_pred             CCCcEEecCeEEEccCCCCCCCCCCCCCC----CCCEEEecCHHHHHHHHHhhc---CCCeEEEECCC------h----H
Q 014997           82 NSGKLLKYGSLIVATGCTASRFPEKIGGY----LPGVHYIRDVADADALISSLE---KAKKVVVVGGG------Y----I  144 (414)
Q Consensus        82 ~~g~~~~yd~LviAtG~~~~~~~~~~g~~----~~gv~~~~~~~~~~~~~~~~~---~~~~vvVvGgG------~----~  144 (414)
                      .+|+++.||+||||||+++.. +.++|..    ...++.+++.+++..+++.+.   .+..+++.+++      .    .
T Consensus        90 ~~g~~i~yd~LviAtG~~~~~-~~i~G~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~i~~~~a~~e~  168 (401)
T 3vrd_B           90 AGGAEFAYDRCVVAPGIDLLY-DKIEGYSEALAAKLPHAWKAGEQTALLRRQLESMDDGGVVIIAPPAPPFRCPPGPYER  168 (401)
T ss_dssp             TTSCEEECSEEEECCCEEECG-GGSBTCCSGGGGTSCCCSSCSHHHHHHHHHHHHSCTTCEEEEECCSSSCBCTTHHHHH
T ss_pred             cccceeecceeeeccCCcccc-CCccCchhhcccCccceeccHHHHHHHHHHHHhcccCCcEEEecCCccEEeehHHHHH
Confidence            999999999999999998763 4455533    234566677777776655443   44455544332      1    4


Q ss_pred             HHHHHHHHHhCC--CcEEEEeeCCcccc-cccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEe
Q 014997          145 GMEVAAAAVGWK--LDTTIIFPENHLLQ-RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTID  221 (414)
Q Consensus       145 g~e~A~~l~~~g--~~Vtlv~~~~~~l~-~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~  221 (414)
                      ++++|..+++.+  .+|++++..+.+.. ..+++.+.+.+.+.+++.||++++++.+..++.+.+..  .+.+++|++++
T Consensus       169 ~~~~a~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~v~~v~~~~~~~--~v~~~~g~~i~  246 (401)
T 3vrd_B          169 ASQIAHYLKAHKSKSKVIILDNSQTFSKQAQFTKGWERLYGFGTENALIEWHPGPDAAVVKTDTEAM--TVETSFGETFK  246 (401)
T ss_dssp             HHHHHHHHHHHCTTCEEEEECSSSSCTTHHHHHHHHHHHSCTTSTTCSEEEECTTTTCEEEEETTTT--EEEETTSCEEE
T ss_pred             HHHHHHHHHhcCCCCEEEEEcccccccccccccHHHHHHHHHHHHhcCcEEEeCceEEEEEecccce--EEEcCCCcEEE
Confidence            556666676655  67999988877632 23566677777777889999999999999887654443  67899999999


Q ss_pred             cCEEEEccCCcCCChhhhhcCCcccCCCEEEcCC-CC-CCCCcEEEEcccccc-CCccCCcccccccHHHHHHHHHHHHH
Q 014997          222 ADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQ-FR-TRMPGIFAIGDVAAF-PLKMYDRTARVEHVDHARQSAQHCIK  298 (414)
Q Consensus       222 ~D~vi~a~G~~p~~~~l~~~gl~~~~g~i~vd~~-~~-t~~~~IyA~GD~a~~-~~~~~~~~~~~~~~~~A~~~a~~aa~  298 (414)
                      +|++++++|.+|+ .+++++++..++|+|.||++ +| |++|||||+|||+.. +.++        ....|..||+.+|+
T Consensus       247 ~D~vi~~~g~~~~-~~~~~~gl~~~~G~i~VD~~tl~~t~~p~VfAiGDva~~~~~pk--------~a~~A~~qa~v~A~  317 (401)
T 3vrd_B          247 AAVINLIPPQRAG-KIAQSASLTNDSGWCPVDIRTFESSLQPGIHVIGDACNAAPMPK--------SAYSANSQAKVAAA  317 (401)
T ss_dssp             CSEEEECCCEEEC-HHHHHTTCCCTTSSBCBCTTTCBBSSSTTEEECGGGBCCTTSCB--------SHHHHHHHHHHHHH
T ss_pred             eeEEEEecCcCCc-hhHhhccccccCCCEEECCCcceecCCCCEEEecccccCCCCCc--------hHHHHHHHHHHHHH
Confidence            9999999999998 78999999877889999986 65 799999999999864 2222        56679999999999


Q ss_pred             HHhc
Q 014997          299 ALLS  302 (414)
Q Consensus       299 ~i~~  302 (414)
                      ||+.
T Consensus       318 ni~~  321 (401)
T 3vrd_B          318 AVVA  321 (401)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9974

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=99.97  E-value=3.3e-31  Score=264.13  Aligned_cols=282  Identities=17%  Similarity=0.152  Sum_probs=206.1

Q ss_pred             CCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCCCEEEe
Q 014997            2 ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLIT   81 (414)
Q Consensus         2 ~~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~   81 (414)
                      +..+||||+++++++|. |.+.. +..+ .....++           .....+++++.||+++. .+|+.++++.+.|++
T Consensus        29 ~g~~Vtlie~~~~~~~~-~~~~~-~~~g-~~~~~~~-----------~~~l~~~~~~~gv~~~~-~~v~~id~~~~~V~~   93 (437)
T 3sx6_A           29 SGHEVTLISANDYFQFV-PSNPW-VGVG-WKERDDI-----------AFPIRHYVERKGIHFIA-QSAEQIDAEAQNITL   93 (437)
T ss_dssp             GGSEEEEECSSSEEECG-GGHHH-HHHT-SSCHHHH-----------EEECHHHHHTTTCEEEC-SCEEEEETTTTEEEE
T ss_pred             CcCEEEEEeCCCCCccc-CCccc-cccC-ccCHHHH-----------HHHHHHHHHHCCCEEEE-eEEEEEEcCCCEEEE
Confidence            35689999999988775 54443 3333 1111112           23467788889999986 599999999999999


Q ss_pred             CCCcEEecCeEEEccCCCCCCCCCCCCCCC--CCEEEecCHHHHHHHHHhhc---CCCeEEEECCChH----H--HHHH-
Q 014997           82 NSGKLLKYGSLIVATGCTASRFPEKIGGYL--PGVHYIRDVADADALISSLE---KAKKVVVVGGGYI----G--MEVA-  149 (414)
Q Consensus        82 ~~g~~~~yd~LviAtG~~~~~~~~~~g~~~--~gv~~~~~~~~~~~~~~~~~---~~~~vvVvGgG~~----g--~e~A-  149 (414)
                      ++|+++.||+||||||+++.. +.++|.+.  ...+.+.+..++..+.+.+.   ++++++|||+|..    |  +|+| 
T Consensus        94 ~~g~~i~~d~lviAtG~~~~~-~~ipG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~vVVGgG~~~g~~G~~~E~a~  172 (437)
T 3sx6_A           94 ADGNTVHYDYLMIATGPKLAF-ENVPGSDPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGAMAGASCFGPAYEYAM  172 (437)
T ss_dssp             TTSCEEECSEEEECCCCEECG-GGSTTCSTTTSSEECCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHHHHHH
T ss_pred             CCCCEEECCEEEECCCCCcCc-ccCCCCCcccCcceecccccHHHHHHHHHHHHHhCCCEEEEEcCCCCCcCcHHHHHHH
Confidence            999999999999999998863 55667543  25566778888877655332   2456788888554    4  7777 


Q ss_pred             ---HHHHhCCCc-----EEEEeeCCcccccccC--HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCC---
Q 014997          150 ---AAAVGWKLD-----TTIIFPENHLLQRLFT--PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---  216 (414)
Q Consensus       150 ---~~l~~~g~~-----Vtlv~~~~~~l~~~~~--~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~---  216 (414)
                         ..++++|.+     |+++++.+.+....++  ++....+.+.++++||++++++.|++++.+  +........+   
T Consensus       173 ~la~~l~~~g~~~~~~~Vtlv~~~~~~~~~~l~~~~~~~~~~~~~l~~~gI~~~~~~~v~~v~~~--~v~~~~~~~~g~~  250 (437)
T 3sx6_A          173 IVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEGIEAYTNCKVTKVEDN--KMYVTQVDEKGET  250 (437)
T ss_dssp             HHHHHHHHTTCGGGCSCEEEEESSSSTTCTTTTCCTTHHHHHHHHHHHTTCEEECSEEEEEEETT--EEEEEEECTTSCE
T ss_pred             HHHHHHHHcCCcccCcEEEEEcCCccccccccCcchHHHHHHHHHHHHCCCEEEcCCEEEEEECC--eEEEEecccCCcc
Confidence               556677865     9999999877432111  357888899999999999999999999742  2111111233   


Q ss_pred             --CcEEecCEEEEccCCcCCChhhhhcCCcccCCCEEEcCCCCC-CCCcEEEEccccccCCccCCcc---cccccHHHHH
Q 014997          217 --GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRT-RMPGIFAIGDVAAFPLKMYDRT---ARVEHVDHAR  290 (414)
Q Consensus       217 --g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~g~i~vd~~~~t-~~~~IyA~GD~a~~~~~~~~~~---~~~~~~~~A~  290 (414)
                        ++++++|.+++++|++|+..+.+.+++..++|+|.||+++|| ++|||||+|||+..+... +..   ....+...|.
T Consensus       251 ~~~~~i~~D~vv~~~g~~~~~~~~~~~gl~~~~G~i~Vd~~l~t~~~~~Ifa~GD~~~~~~~~-~~~~~~~~pk~~~~A~  329 (437)
T 3sx6_A          251 IKEMVLPVKFGMMIPAFKGVPAVAGVEGLCNPGGFVLVDEHQRSKKYANIFAAGIAIAIPPVE-TTPVPTGAPKTGYMIE  329 (437)
T ss_dssp             EEEEEEECSEEEEECCEECCHHHHTSTTTBCTTSCBCBCTTSBBSSCTTEEECGGGBCCCCSC-CCSSCCCCCCCHHHHH
T ss_pred             ccceEEEEeEEEEcCCCcCchhhhccccccCCCCcEEeChhccCCCCCCEEEEEEEeccCCcC-CCcCCCCCCcHHHHHH
Confidence              567999999999999988544444677666788999999998 999999999999876421 111   1123677899


Q ss_pred             HHHHHHHHHHhc
Q 014997          291 QSAQHCIKALLS  302 (414)
Q Consensus       291 ~~a~~aa~~i~~  302 (414)
                      .||+.+|+||..
T Consensus       330 ~qg~~aA~ni~~  341 (437)
T 3sx6_A          330 SMVSAAVHNIKA  341 (437)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999985

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=99.97  E-value=6.2e-30  Score=243.38  Aligned_cols=246  Identities=24%  Similarity=0.350  Sum_probs=185.2

Q ss_pred             CCCCCCccccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCC---
Q 014997           35 ARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---  111 (414)
Q Consensus        35 ~~l~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~---  111 (414)
                      .++|+++...+.++..+...++.+.+..+..+..+...+.....+.+.+++++.||+||||||++|+. |++||.+.   
T Consensus        51 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~liiAtGs~~~~-~~ipG~~~~~~  129 (312)
T 4gcm_A           51 ENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKK-IGVPGEQELGG  129 (312)
T ss_dssp             CCSTTCSSBCHHHHHHHHHHHHHHTTCEEEECCCCEEEECSSCEEEECSSCEEEEEEEEECCCEEECC-CCCTTTTTTBT
T ss_pred             CCcCCccccchHHHHHHHHHHHhhccccccceeeeeeeeeecceeeccCCeEEEeceeEEcccCccCc-CCCCChhhhCC
Confidence            34455555555555555667777888888888788878887788888888899999999999999874 45666542   


Q ss_pred             CCEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcE
Q 014997          112 PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK  191 (414)
Q Consensus       112 ~gv~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~  191 (414)
                      .++++..      .......++|+++|||||++|+|+|..|+++|.+||++++.+++++..    .  ...+.+++.++.
T Consensus       130 ~~v~~~~------~~~~~~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~~~~~----~--~~~~~~~~~~~~  197 (312)
T 4gcm_A          130 RGVSYCA------VCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQR----I--LQDRAFKNDKID  197 (312)
T ss_dssp             TTEESCH------HHHGGGGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCSCH----H--HHHHHHHCTTEE
T ss_pred             ccEEeee------ccCccccCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEecccccCcch----h--HHHHHHHhcCcc
Confidence            2444321      122234568999999999999999999999999999999999877631    1  223556788899


Q ss_pred             EEcCceEEEEEecCCCc--EEEEEe--CCCcEEecCEEEEccCCcCCChhhhhcCCcccCCCEEEcCCCCCCCCcEEEEc
Q 014997          192 FVKGASIKNLEAGSDGR--VAAVKL--EDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIG  267 (414)
Q Consensus       192 i~~~~~v~~i~~~~~~~--~~~v~~--~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~g~i~vd~~~~t~~~~IyA~G  267 (414)
                      ......+..+...+...  ......  .++..+++|.|++++|.+|+..+++..++..++|+|.||++||||+|+|||+|
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~g~~~~~~~~~~~g~~~~~G~I~vd~~~~Ts~pgIyA~G  277 (312)
T 4gcm_A          198 FIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTSVPGIFAAG  277 (312)
T ss_dssp             EECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGGGGTCBCTTSCBCCCTTSBCSSTTEEECS
T ss_pred             eeeecceeeeeccccccccceeeeecCCceeEEeeeeEEeecCCCcCchhHHhcceecCCCeEeeCCCCccCCCCEEEEe
Confidence            98887776665432111  111112  23357999999999999999999999999888888999999999999999999


Q ss_pred             cccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997          268 DVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       268 D~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                      ||+..+..         .+..|..+|+.||.||..
T Consensus       278 Dv~~~~~~---------~~~~A~~~G~~AA~~i~~  303 (312)
T 4gcm_A          278 DVRDKGLR---------QIVTATGDGSIAAQSAAE  303 (312)
T ss_dssp             TTBSCSCC---------SHHHHHHHHHHHHHHHHH
T ss_pred             ecCCCcch---------HHHHHHHHHHHHHHHHHH
Confidence            99874321         455689999999999863

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=99.97  E-value=2.7e-30  Score=255.38  Aligned_cols=267  Identities=19%  Similarity=0.223  Sum_probs=207.4

Q ss_pred             CCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCCCEEEeC
Q 014997            3 DGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITN   82 (414)
Q Consensus         3 ~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~   82 (414)
                      ..+||||++++++.| +|.++. +..+ .....++           .....+++++.+++++.+ +|+.++++.+.|++.
T Consensus        27 g~~V~vie~~~~~~~-~~~~~~-~~~~-~~~~~~~-----------~~~~~~~~~~~gv~~~~~-~v~~i~~~~~~V~~~   91 (409)
T 3h8l_A           27 KADVKVINKSRFSYF-RPALPH-VAIG-VRDVDEL-----------KVDLSEALPEKGIQFQEG-TVEKIDAKSSMVYYT   91 (409)
T ss_dssp             GSEEEEEESSSEEEE-CCSSCC-CCSS-CCCCCCE-----------EEEHHHHTGGGTCEEEEC-EEEEEETTTTEEEEE
T ss_pred             CCeEEEEeCCCCcee-ccchhh-cccC-CcCHHHH-----------HHHHHHHHhhCCeEEEEe-eEEEEeCCCCEEEEc
Confidence            468999999988655 477665 3332 2222222           234566777889999987 999999999999998


Q ss_pred             CCcE----EecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcC-CCeEEEECCCh--------------
Q 014997           83 SGKL----LKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK-AKKVVVVGGGY--------------  143 (414)
Q Consensus        83 ~g~~----~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~-~~~vvVvGgG~--------------  143 (414)
                      +++.    +.||+||+|||+++.. +.++|.+. ..+++.+..++..+.+.+.. .++++|||+|.              
T Consensus        92 ~g~~~~~~~~~d~lViAtG~~~~~-~~ipG~~~-~~~~~~~~~~~~~~~~~l~~~~~~~vViG~G~f~~~~~~~~~~p~~  169 (409)
T 3h8l_A           92 KPDGSMAEEEYDYVIVGIGAHLAT-ELVKGWDK-YGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHNPKPKVPEN  169 (409)
T ss_dssp             CTTSCEEEEECSEEEECCCCEECG-GGSBTHHH-HCEESSSTTHHHHHHHHHHHCCSEEEEEEECCBCCCCSSCCBSCTT
T ss_pred             cCCcccceeeCCEEEECCCCCcCc-cCCCChhh-cCcCcCCHHHHHHHHHHHHHhcCCeEEEEecccccCCCcccccccc
Confidence            8764    9999999999998763 44455322 34566677777777665543 26777999992              


Q ss_pred             -----------HHHHHHH----HHHhCCC----cEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEec
Q 014997          144 -----------IGMEVAA----AAVGWKL----DTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG  204 (414)
Q Consensus       144 -----------~g~e~A~----~l~~~g~----~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~  204 (414)
                                 .++|+|.    .+++.|.    +|+++++.+ +++ .+++.+.+.+.+.+++.||++++++.|++++.+
T Consensus       170 ~~p~~~~~~~~~~~e~a~~~~~~l~~~g~~~~~~v~~~~~~~-~l~-~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~  247 (409)
T 3h8l_A          170 FVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGE-YLS-DLSPNSRKAVASIYNQLGIKLVHNFKIKEIREH  247 (409)
T ss_dssp             SSCCCSCSSCHHHHHHHHHHHHHHHTTTCTTTEEEEEECSSS-SST-TBCHHHHHHHHHHHHHHTCEEECSCCEEEECSS
T ss_pred             ccCCCCcccCCHHHHHHHHHHHHHHHcCCCCCeEEEEEeCCc-ccc-ccCHHHHHHHHHHHHHCCCEEEcCCceEEECCC
Confidence                       4777775    4567774    899999988 665 478899999999999999999999999999743


Q ss_pred             CCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhc--CCcccCCCEEEcCCCCC-CCCcEEEEccccccCCccCCccc
Q 014997          205 SDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERV--GLNSSVGGIQVDGQFRT-RMPGIFAIGDVAAFPLKMYDRTA  281 (414)
Q Consensus       205 ~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~--gl~~~~g~i~vd~~~~t-~~~~IyA~GD~a~~~~~~~~~~~  281 (414)
                            .+.+++|+++++|.+|+++|++|+ .+++++  ++..++|+|.||+++|| +.|||||+|||+..+.+.     
T Consensus       248 ------~v~~~~g~~~~~D~vi~a~G~~~~-~~l~~~~~~l~~~~G~i~vd~~~~~~~~~~vfa~GD~~~~~~~~-----  315 (409)
T 3h8l_A          248 ------EIVDEKGNTIPADITILLPPYTGN-PALKNSTPDLVDDGGFIPTDLNMVSIKYDNVYAVGDANSMTVPK-----  315 (409)
T ss_dssp             ------EEEETTSCEEECSEEEEECCEECC-HHHHTSCGGGSCTTSCBCBBTTSBBSSCTTEEECGGGBTTCCSC-----
T ss_pred             ------eEEECCCCEEeeeEEEECCCCCcc-HHHHhccccCcCCCCCEEeCcccccCCCCCEEEeehhccCCCCc-----
Confidence                  478899999999999999999998 678877  55445678999999999 999999999999864332     


Q ss_pred             ccccHHHHHHHHHHHHHHHhcC
Q 014997          282 RVEHVDHARQSAQHCIKALLSA  303 (414)
Q Consensus       282 ~~~~~~~A~~~a~~aa~~i~~~  303 (414)
                         .+..|..||+.+|+||.+.
T Consensus       316 ---~~~~A~~q~~~aa~~i~~~  334 (409)
T 3h8l_A          316 ---LGYLAVMTGRIAAQHLANR  334 (409)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHHHHHH
Confidence               5667999999999999864

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.97  E-value=1.3e-30  Score=253.08  Aligned_cols=247  Identities=22%  Similarity=0.319  Sum_probs=185.3

Q ss_pred             HhHHHHcCCeEEcCCcEEEEeCCCC---EEEeCCCcEEecCeEEEccCCC---CCCCCCCCC-C-CCC--CEEEe-cCHH
Q 014997           53 PEWYKEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCT---ASRFPEKIG-G-YLP--GVHYI-RDVA  121 (414)
Q Consensus        53 ~~~~~~~~i~~~~~~~V~~id~~~~---~V~~~~g~~~~yd~LviAtG~~---~~~~~~~~g-~-~~~--gv~~~-~~~~  121 (414)
                      .+.+++.+++++.+++|+.++.+..   .|.+.+|+++.||+||+|||+.   |. .+.++| . ...  ++++. ++..
T Consensus        81 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~~~~~-~~~i~g~~~~~~~~~v~~~~~~~~  159 (360)
T 3ab1_A           81 WAQAERYNPDVVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPR-KLPQLGNIDHLTGSSVYYAVKSVE  159 (360)
T ss_dssp             HHHHHTTCCEEECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTCSCCBC-CCGGGCCCTTTBTTTEESSCSCGG
T ss_pred             HHHHHHhCCEEEcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCCcCCCC-CCCCCCchhhCcCceEEEecCCHH
Confidence            4556677999999999999997643   7888889889999999999994   43 333445 2 222  34332 2111


Q ss_pred             HHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEE
Q 014997          122 DADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNL  201 (414)
Q Consensus       122 ~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i  201 (414)
                              ...+++|+|||+|.+|+|+|..|++.+.+|+++++.+.+.+.   +...+.+.+.+++.||++++++.++++
T Consensus       160 --------~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~---~~~~~~l~~~~~~~gv~i~~~~~v~~i  228 (360)
T 3ab1_A          160 --------DFKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGH---GKTAHEVERARANGTIDVYLETEVASI  228 (360)
T ss_dssp             --------GGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSSC---SHHHHSSHHHHHHTSEEEESSEEEEEE
T ss_pred             --------HcCCCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCCC---HHHHHHHHHHhhcCceEEEcCcCHHHh
Confidence                    125799999999999999999999999999999998876642   356667778888999999999999999


Q ss_pred             EecCCCcEEEEEeC--CC--cEEecCEEEEccCCcCCChhhhhcCCcccCCCEEEcCCCCCCCCcEEEEccccccCCccC
Q 014997          202 EAGSDGRVAAVKLE--DG--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMY  277 (414)
Q Consensus       202 ~~~~~~~~~~v~~~--~g--~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~  277 (414)
                      ..+ ++.+..+.+.  +|  +++++|.||+++|++|+.++++..++..++|+|.||++++|+.|+|||+|||+..+..  
T Consensus       229 ~~~-~~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~--  305 (360)
T 3ab1_A          229 EES-NGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLARWDLELYENALVVDSHMKTSVDGLYAAGDIAYYPGK--  305 (360)
T ss_dssp             EEE-TTEEEEEEEEETTCCEEEEECSEEEECCCBCCSCGGGGGSSCCEETTEEECCTTSBCSSTTEEECSTTEECTTC--
T ss_pred             ccC-CCceEEEEEEecCCCeEEEeCCEEEECCCCCCCHHHHHhhccccccCeeeecCCCcCCCCCEEEecCccCCCCc--
Confidence            864 4555456653  77  5799999999999999999999988887778999999999999999999999986532  


Q ss_pred             CcccccccHHHHHHHHHHHHHHHhcCCCCCCCCCCceeeecc
Q 014997          278 DRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVF  319 (414)
Q Consensus       278 ~~~~~~~~~~~A~~~a~~aa~~i~~~~~~~~~~~p~~~~~~~  319 (414)
                           ...+..|..||..+|++|++.........+++++..+
T Consensus       306 -----~~~~~~A~~~g~~aa~~i~~~l~~~~~~~~~~~~~~~  342 (360)
T 3ab1_A          306 -----LKIIQTGLSEATMAVRHSLSYIKPGEKIRNVFSSVKM  342 (360)
T ss_dssp             -----CCSHHHHHHHHHHHHHHHHHHHSCC------------
T ss_pred             -----cceeehhHHHHHHHHHHHHhhcCCccccCceeccchh
Confidence                 2267789999999999998633222222445555443

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.97  E-value=7.6e-30  Score=243.07  Aligned_cols=229  Identities=22%  Similarity=0.312  Sum_probs=180.9

Q ss_pred             CCHhHHHHcCCeEEcCCcEEEEeCCC--CEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCC---CCEEEecCHHHHHH
Q 014997           51 QTPEWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADA  125 (414)
Q Consensus        51 ~~~~~~~~~~i~~~~~~~V~~id~~~--~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~---~gv~~~~~~~~~~~  125 (414)
                      ...+++++.+++++. ++|++++.+.  ..|.+++|.++.||+||+|||+.+.. +.+++...   +++++..      .
T Consensus        75 ~~~~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~-~~i~g~~~~~~~~~~~~~------~  146 (323)
T 3f8d_A           75 VFNKHIEKYEVPVLL-DIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRK-LGVPGEQEFAGRGISYCS------V  146 (323)
T ss_dssp             HHHHHHHTTTCCEEE-SCEEEEEEC--CEEEEESSSCEEEEEEEEECCCCEECC-CCCTTTTTTBTTTEESCH------H
T ss_pred             HHHHHHHHcCCEEEE-EEEEEEEecCCEEEEEECCCCEEEcCEEEECcCCCCcc-CCCCchhhhcCCceEEec------c
Confidence            345667778999999 7999998874  36888888899999999999999764 45566443   5554421      1


Q ss_pred             HHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecC
Q 014997          126 LISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS  205 (414)
Q Consensus       126 ~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~  205 (414)
                      .......+++++|||+|.+|+|+|..|++.|.+|+++++.+++++   ++.   .+.+.+++.||++++++.++++..+ 
T Consensus       147 ~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~---~~~---~~~~~~~~~gv~~~~~~~v~~i~~~-  219 (323)
T 3f8d_A          147 ADAPLFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKA---QPI---YVETVKKKPNVEFVLNSVVKEIKGD-  219 (323)
T ss_dssp             HHGGGGTTCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCS---CHH---HHHHHHTCTTEEEECSEEEEEEEES-
T ss_pred             CCHhHcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCc---CHH---HHHHHHhCCCcEEEeCCEEEEEecc-
Confidence            122345789999999999999999999999999999999987765   222   3334444559999999999999854 


Q ss_pred             CCcEEEEEeCC---Cc--EEecCEEEEccCCcCCChhhhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCc
Q 014997          206 DGRVAAVKLED---GS--TIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR  279 (414)
Q Consensus       206 ~~~~~~v~~~~---g~--~i~~D~vi~a~G~~p~~~~l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~  279 (414)
                       +.+..+.+.+   |+  ++++|.||+++|++|+.++++.+++..+ +|+|.||++++|+.|+|||+|||+..+.     
T Consensus       220 -~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~g~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~-----  293 (323)
T 3f8d_A          220 -KVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMRTSVPGVFAAGDCTSAWL-----  293 (323)
T ss_dssp             -SSEEEEEEEETTTCCEEEEECSEEEECCCEECCHHHHHHTTCCBCTTSSBCCCTTCBCSSTTEEECSTTBSTTT-----
T ss_pred             -CceeEEEEEECCCCceEEEEcCEEEEEECCCCChhHHhhcCeeecCCCcEecCCCceecCCCEEEcceecCCCC-----
Confidence             4555666655   76  7999999999999999999999998864 6889999999999999999999998641     


Q ss_pred             ccccccHHHHHHHHHHHHHHHhc
Q 014997          280 TARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       280 ~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                        ....+..|..+|+.+|.+|..
T Consensus       294 --~~~~~~~A~~~g~~aa~~i~~  314 (323)
T 3f8d_A          294 --GFRQVITAVAQGAVAATSAYR  314 (323)
T ss_dssp             --TCCCHHHHHHHHHHHHHHHHH
T ss_pred             --cccceeehhhHHHHHHHHHHH
Confidence              112677899999999998864

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.97  E-value=2.1e-30  Score=248.83  Aligned_cols=230  Identities=19%  Similarity=0.257  Sum_probs=184.1

Q ss_pred             HhHHHHcCCeEEcCCcEEEEeCCC--CEEEeCCCcEEecCeEEEccCCC---CCCCCCCCCCC-C--CCEEE-ecCHHHH
Q 014997           53 PEWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCT---ASRFPEKIGGY-L--PGVHY-IRDVADA  123 (414)
Q Consensus        53 ~~~~~~~~i~~~~~~~V~~id~~~--~~V~~~~g~~~~yd~LviAtG~~---~~~~~~~~g~~-~--~gv~~-~~~~~~~  123 (414)
                      .+.+++.+++++++++|+.++.+.  ..|.+++|+++.||+||+|||+.   |. .+.++|.+ .  .++++ +++..  
T Consensus        72 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~p~-~~~i~g~~~~~~~~~~~~~~~~~--  148 (335)
T 2zbw_A           72 VEQVAPFNPVYSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFEPR-RIGAPGEREFEGRGVYYAVKSKA--  148 (335)
T ss_dssp             HHHHGGGCCEEEESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTSEEEEC-CCCCTTTTTTBTTTEESSCSCGG--
T ss_pred             HHHHHHcCCEEEeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCCCCCCC-CCCCCChhhccCcEEEEecCchh--
Confidence            455567799999999999998765  35777888889999999999994   44 33344432 1  23432 11111  


Q ss_pred             HHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEe
Q 014997          124 DALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  203 (414)
Q Consensus       124 ~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~  203 (414)
                            ...+++++|||+|.+|+|+|..|++.|.+|+++++.+.+++   .++..+.+.+.+++.||++++++.++++..
T Consensus       149 ------~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~---~~~~~~~l~~~l~~~gv~v~~~~~v~~i~~  219 (335)
T 2zbw_A          149 ------EFQGKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRA---HEASVKELMKAHEEGRLEVLTPYELRRVEG  219 (335)
T ss_dssp             ------GGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCS---CHHHHHHHHHHHHTTSSEEETTEEEEEEEE
T ss_pred             ------hcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCc---cHHHHHHHHhccccCCeEEecCCcceeEcc
Confidence                  12579999999999999999999999999999999987754   356777888889999999999999999986


Q ss_pred             cCCCcEEEEEeC---CC--cEEecCEEEEccCCcCCChhhhhcCCcccCCCEEEcCCCCCCCCcEEEEccccccCCccCC
Q 014997          204 GSDGRVAAVKLE---DG--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYD  278 (414)
Q Consensus       204 ~~~~~~~~v~~~---~g--~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~  278 (414)
                        ++.+..+.+.   +|  +++++|.||+++|++|+.++++++++..++|+|.||++++|+.|+|||+|||+..+..   
T Consensus       220 --~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~---  294 (335)
T 2zbw_A          220 --DERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGPLANWGLALEKNKIKVDTTMATSIPGVYACGDIVTYPGK---  294 (335)
T ss_dssp             --SSSEEEEEEEETTTCCEEEEECSEEEECCCEEEECGGGGGSCCCEETTEEECCTTCBCSSTTEEECSTTEECTTC---
T ss_pred             --CCCeeEEEEEECCCCceEEEecCEEEEeecCCCCchHhhhcceeccCCeeeeCCCCCCCCCCEEEeccccccCcc---
Confidence              3444456665   67  5799999999999999998999999887778999999999999999999999986532   


Q ss_pred             cccccccHHHHHHHHHHHHHHHhcC
Q 014997          279 RTARVEHVDHARQSAQHCIKALLSA  303 (414)
Q Consensus       279 ~~~~~~~~~~A~~~a~~aa~~i~~~  303 (414)
                          ...+..|..+|..+|+||.+.
T Consensus       295 ----~~~~~~A~~~g~~aa~~i~~~  315 (335)
T 2zbw_A          295 ----LPLIVLGFGEAAIAANHAAAY  315 (335)
T ss_dssp             ----CCCHHHHHHHHHHHHHHHHHH
T ss_pred             ----hhhhhhhHHHHHHHHHHHHHH
Confidence                126778999999999999863

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=99.97  E-value=1.4e-30  Score=249.37  Aligned_cols=242  Identities=17%  Similarity=0.242  Sum_probs=185.1

Q ss_pred             CCCHhHHHHcCCeEEcCCcEEEEeCCCC---EEEeCCCcEEecCeEEEccCC---CCCCCCCCCCCCC---CCEEEecCH
Q 014997           50 RQTPEWYKEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGC---TASRFPEKIGGYL---PGVHYIRDV  120 (414)
Q Consensus        50 ~~~~~~~~~~~i~~~~~~~V~~id~~~~---~V~~~~g~~~~yd~LviAtG~---~~~~~~~~~g~~~---~gv~~~~~~  120 (414)
                      ....+++++.+++++++++|+.++++.+   .|.+++|+ +.||+||+|||+   .|. .+.++|.+.   .++++  .+
T Consensus        71 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~-~~~d~vVlAtG~~~~~p~-~~~~~g~~~~~g~~~~~--~~  146 (332)
T 3lzw_A           71 NNLKEQMAKFDQTICLEQAVESVEKQADGVFKLVTNEET-HYSKTVIITAGNGAFKPR-KLELENAEQYEGKNLHY--FV  146 (332)
T ss_dssp             HHHHHHHTTSCCEEECSCCEEEEEECTTSCEEEEESSEE-EEEEEEEECCTTSCCEEC-CCCCTTGGGGBTTTEES--SC
T ss_pred             HHHHHHHHHhCCcEEccCEEEEEEECCCCcEEEEECCCE-EEeCEEEECCCCCcCCCC-CCCCCChhhccCceEEE--ec
Confidence            3445566678999999999999998876   88888886 999999999999   665 344455432   23433  12


Q ss_pred             HHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEE
Q 014997          121 ADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKN  200 (414)
Q Consensus       121 ~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~  200 (414)
                      .+..     ..++++++|||+|.+|+|+|..|++.+.+|+++++.+++.+  .++     ..+.+++.||++++++.+.+
T Consensus       147 ~~~~-----~~~~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~--~~~-----~~~~l~~~gv~~~~~~~v~~  214 (332)
T 3lzw_A          147 DDLQ-----KFAGRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRA--HEH-----SVENLHASKVNVLTPFVPAE  214 (332)
T ss_dssp             SCGG-----GGBTCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSS--CHH-----HHHHHHHSSCEEETTEEEEE
T ss_pred             CCHH-----HcCCCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCc--cHH-----HHHHHhcCCeEEEeCceeeE
Confidence            1111     12579999999999999999999999999999999987653  222     12447889999999999999


Q ss_pred             EEecCCCcEEEEEeCC-----CcEEecCEEEEccCCcCCChhhhhcCCcccCCCEEEcCCCCCCCCcEEEEccccccCCc
Q 014997          201 LEAGSDGRVAAVKLED-----GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK  275 (414)
Q Consensus       201 i~~~~~~~~~~v~~~~-----g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~  275 (414)
                      +..+++  ...+.+.+     +++++||.||+++|++|+.++++.+++..++|+|.||++++|+.|+|||+|||+..+..
T Consensus       215 i~~~~~--~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~  292 (332)
T 3lzw_A          215 LIGEDK--IEQLVLEEVKGDRKEILEIDDLIVNYGFVSSLGPIKNWGLDIEKNSIVVKSTMETNIEGFFAAGDICTYEGK  292 (332)
T ss_dssp             EECSSS--CCEEEEEETTSCCEEEEECSEEEECCCEECCCGGGGGSSCCEETTEEECCTTSBCSSTTEEECGGGEECTTC
T ss_pred             EecCCc--eEEEEEEecCCCceEEEECCEEEEeeccCCCchHHhhcCccccCCeEEeCCCCceecCCEEEccceecCCCC
Confidence            986433  33555554     45799999999999999999999999988778999999999999999999999976432


Q ss_pred             cCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCCCceee
Q 014997          276 MYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYS  316 (414)
Q Consensus       276 ~~~~~~~~~~~~~A~~~a~~aa~~i~~~~~~~~~~~p~~~~  316 (414)
                             ...+..|..+|+.+|.+|+..........|++++
T Consensus       293 -------~~~~~~A~~~g~~aa~~i~~~l~~~~~~~~~~s~  326 (332)
T 3lzw_A          293 -------VNLIASGFGEAPTAVNNAKAYMDPKARVQPLHST  326 (332)
T ss_dssp             -------CCCHHHHHHHHHHHHHHHHHHHCTTSCSSCCCHH
T ss_pred             -------cceEeeehhhHHHHHHHHHHhhChhhccCCceec
Confidence                   2267789999999999997633322233444433

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=99.97  E-value=7.9e-29  Score=235.26  Aligned_cols=226  Identities=23%  Similarity=0.333  Sum_probs=176.9

Q ss_pred             CHhHHHHcCCeEEcCCcEEEEeCC-----CCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCC---CCCEEEecCHHHH
Q 014997           52 TPEWYKEKGIEMIYQDPVTSIDIE-----KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADA  123 (414)
Q Consensus        52 ~~~~~~~~~i~~~~~~~V~~id~~-----~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~---~~gv~~~~~~~~~  123 (414)
                      ..+++++.+++++.+++|+.++++     ...|.+++|+++.||+||+|||+++.. |.++|.+   ..++++..     
T Consensus        62 ~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~-~~~~g~~~~~~~~~~~~~-----  135 (310)
T 1fl2_A           62 LKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRN-MNVPGEDQYRTKGVTYCP-----  135 (310)
T ss_dssp             HHHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECC-CCCTTTTTTBTTTEESCH-----
T ss_pred             HHHHHHHcCCeEEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCCcCC-CCCCChhhcccceeEEec-----
Confidence            345566789999999899999875     357888889889999999999998764 4455532   13444321     


Q ss_pred             HHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHh-CCcEEEcCceEEEEE
Q 014997          124 DALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ-NGVKFVKGASIKNLE  202 (414)
Q Consensus       124 ~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~-~gv~i~~~~~v~~i~  202 (414)
                       .+......+++++|||+|++|+|+|..|++.+.+|+++++.+++.   +++    .+.+.+++ .||++++++.++++.
T Consensus       136 -~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~----~~~~~l~~~~gv~v~~~~~v~~i~  207 (310)
T 1fl2_A          136 -HCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK---ADQ----VLQDKLRSLKNVDIILNAQTTEVK  207 (310)
T ss_dssp             -HHHGGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC---SCH----HHHHHHHTCTTEEEESSEEEEEEE
T ss_pred             -cCcHhhcCCCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccC---ccH----HHHHHHhhCCCeEEecCCceEEEE
Confidence             222334578999999999999999999999999999999988763   333    34555666 699999999999998


Q ss_pred             ecCCCcEEEEEeCC---Cc--EEecCEEEEccCCcCCChhhhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCcc
Q 014997          203 AGSDGRVAAVKLED---GS--TIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKM  276 (414)
Q Consensus       203 ~~~~~~~~~v~~~~---g~--~i~~D~vi~a~G~~p~~~~l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~  276 (414)
                      .+ ++.+..+.+.+   |+  ++++|.||+++|++|+.+++++. +..+ +|+|.||++++|+.|+|||+|||+..+.. 
T Consensus       208 ~~-~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~-l~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~-  284 (310)
T 1fl2_A          208 GD-GSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGA-VERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYK-  284 (310)
T ss_dssp             ES-SSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTT-SCBCTTSCBCCCTTCBCSSTTEEECSTTBSCSSC-
T ss_pred             cC-CCcEEEEEEEECCCCcEEEEEcCEEEEeeCCccCchHHhcc-ccccCCCcEEcCCCCccCCCCEEEeecccCCcch-
Confidence            54 45555566643   53  69999999999999999888764 6553 57899999999999999999999986532 


Q ss_pred             CCcccccccHHHHHHHHHHHHHHHhc
Q 014997          277 YDRTARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       277 ~~~~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                              .+..|..+|+.+|.+|..
T Consensus       285 --------~~~~A~~~g~~aa~~i~~  302 (310)
T 1fl2_A          285 --------QIIIATGEGAKASLSAFD  302 (310)
T ss_dssp             --------CHHHHHHHHHHHHHHHHH
T ss_pred             --------hhhhhHhhHHHHHHHHHH
Confidence                    466789999999998874

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=99.97  E-value=6.7e-30  Score=240.69  Aligned_cols=217  Identities=22%  Similarity=0.182  Sum_probs=172.9

Q ss_pred             HhHHHHc-CCeEEcCCcEEEEeCCC--CEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCC---CCEEEecCHHHHHHH
Q 014997           53 PEWYKEK-GIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADAL  126 (414)
Q Consensus        53 ~~~~~~~-~i~~~~~~~V~~id~~~--~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~---~gv~~~~~~~~~~~~  126 (414)
                      .+++.+. +++++. ++|+.++++.  ..|.+++|+++.||+||+|||++|+ .|.++|...   .++++..      ..
T Consensus        63 ~~~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~~~~-~~~~~g~~~~~~~~~~~~~------~~  134 (297)
T 3fbs_A           63 RRQIERYPTIHWVE-GRVTDAKGSFGEFIVEIDGGRRETAGRLILAMGVTDE-LPEIAGLRERWGSAVFHCP------YC  134 (297)
T ss_dssp             HHHHTTCTTEEEEE-SCEEEEEEETTEEEEEETTSCEEEEEEEEECCCCEEE-CCCCBTTGGGBTTTEESCH------HH
T ss_pred             HHHHHhcCCeEEEE-eEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCCCCC-CCCCCCchhhcCCeeEEcc------cC
Confidence            3445555 788876 4999998775  4788889989999999999999876 455556432   3444332      11


Q ss_pred             HHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCC
Q 014997          127 ISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD  206 (414)
Q Consensus       127 ~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~  206 (414)
                      ......+++++|||+|.+|+|+|..|++.| +|+++.+.+..    +.+    .+.+.+++.||+++. +.|+++..+  
T Consensus       135 ~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~~----~~~----~~~~~l~~~gv~i~~-~~v~~i~~~--  202 (297)
T 3fbs_A          135 HGYELDQGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIVE----PDA----DQHALLAARGVRVET-TRIREIAGH--  202 (297)
T ss_dssp             HTGGGTTCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTCC----CCH----HHHHHHHHTTCEEEC-SCEEEEETT--
T ss_pred             cchhhcCCEEEEEecCccHHHHHHHhhhcC-cEEEEECCCCC----CCH----HHHHHHHHCCcEEEc-ceeeeeecC--
Confidence            122346899999999999999999999999 99999987652    232    456778899999996 899999743  


Q ss_pred             CcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhcCCcccC---C-CEEEcCCCCCCCCcEEEEccccccCCccCCcccc
Q 014997          207 GRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSV---G-GIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTAR  282 (414)
Q Consensus       207 ~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~---g-~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~  282 (414)
                      +   .+.+.+|+++++|.||+++|++|+.+++++++++.+.   | ++.||++++|+.|+|||+|||+..+.        
T Consensus       203 ~---~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~g~~~~~~~~G~~i~vd~~~~t~~~~vya~GD~~~~~~--------  271 (297)
T 3fbs_A          203 A---DVVLADGRSIALAGLFTQPKLRITVDWIEKLGCAVEEGPMGSTIVTDPMKQTTARGIFACGDVARPAG--------  271 (297)
T ss_dssp             E---EEEETTSCEEEESEEEECCEEECCCSCHHHHTCCEEEETTEEEECCCTTCBCSSTTEEECSGGGCTTC--------
T ss_pred             C---eEEeCCCCEEEEEEEEEccCcccCchhHHhcCCccccCCCCceEEeCCCCccCCCCEEEEeecCCchH--------
Confidence            2   6788999999999999999999999999999988653   4 79999999999999999999998632        


Q ss_pred             cccHHHHHHHHHHHHHHHhc
Q 014997          283 VEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       283 ~~~~~~A~~~a~~aa~~i~~  302 (414)
                        .+..|..+|+.||.+|..
T Consensus       272 --~~~~A~~~g~~aa~~i~~  289 (297)
T 3fbs_A          272 --SVALAVGDGAMAGAAAHR  289 (297)
T ss_dssp             --CHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHhHHHHHHHHHH
Confidence              577799999999998864

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=99.96  E-value=7.3e-29  Score=235.63  Aligned_cols=225  Identities=19%  Similarity=0.253  Sum_probs=176.4

Q ss_pred             HhHHHHcCCeEEcCCcEEEEeCCCC--EEEeCCCcEEecCeEEEccCCCCCCCCCCCCCC---CCCEEEecCHHHHHHHH
Q 014997           53 PEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALI  127 (414)
Q Consensus        53 ~~~~~~~~i~~~~~~~V~~id~~~~--~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~---~~gv~~~~~~~~~~~~~  127 (414)
                      .+++++.+++++. ++|+.++.+.+  .|.+.+|+++.||+||+|||++++ .|.++|.+   .++++++.+      ..
T Consensus        66 ~~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~-~~~~~g~~~~~~~~~~~~~~------~~  137 (311)
T 2q0l_A           66 QEQCFRFGLKHEM-TAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPK-RTGIKGESEYWGKGVSTCAT------CD  137 (311)
T ss_dssp             HHHHHTTSCEEEC-SCEEEEEEETTEEEEEETTSCEEEEEEEEECCCEEEC-CCCCBTHHHHBTTTEESCHH------HH
T ss_pred             HHHHHHcCCEEEE-EEEEEEEEcCCEEEEEEcCCCEEECCEEEECCCCCCC-CCCCCChhhccCCcEEEeec------CC
Confidence            4556678999998 69999987766  677788888999999999999876 44445532   134554322      12


Q ss_pred             HhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHH-hCCcEEEcCceEEEEEecCC
Q 014997          128 SSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ-QNGVKFVKGASIKNLEAGSD  206 (414)
Q Consensus       128 ~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~-~~gv~i~~~~~v~~i~~~~~  206 (414)
                      .....+++++|||+|.+|+|+|..|+++|.+|+++++.+++.   .++.    +.+.+. +.||++++++.++++..+ +
T Consensus       138 ~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~~----~~~~l~~~~gv~v~~~~~v~~i~~~-~  209 (311)
T 2q0l_A          138 GFFYKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFR---CAPI----TLEHAKNNDKIEFLTPYVVEEIKGD-A  209 (311)
T ss_dssp             GGGGTTSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCC---SCHH----HHHHHHTCTTEEEETTEEEEEEEEE-T
T ss_pred             hhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccC---CCHH----HHHHHhhCCCeEEEeCCEEEEEECC-C
Confidence            234568999999999999999999999999999999988763   2333    333444 579999999999999854 2


Q ss_pred             CcEEEEEeC---CCc--EEecCEEEEccCCcCCChhhhhcC----Cccc-CCCEEEcCCCCCCCCcEEEEccccccCCcc
Q 014997          207 GRVAAVKLE---DGS--TIDADTIVIGIGAKPTVSPFERVG----LNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKM  276 (414)
Q Consensus       207 ~~~~~v~~~---~g~--~i~~D~vi~a~G~~p~~~~l~~~g----l~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~  276 (414)
                      +.+..+.+.   +|+  +++||.||+++|++|++++++..+    +..+ +|+|.||+++||+.|+|||+|||+..+.  
T Consensus       210 ~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~g~~~~l~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~--  287 (311)
T 2q0l_A          210 SGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVDFSMKTNVQGLFAAGDIRIFAP--  287 (311)
T ss_dssp             TEEEEEEEEETTTCCEEEEECSEEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTCBCSSTTEEECSTTBTTCC--
T ss_pred             CcEeEEEEEecCCCceEEEecCEEEEEecCccChhhhhcccccceeEeccCCCEEeCCccccCCCCeEEcccccCcch--
Confidence            444456664   665  799999999999999999988775    7654 6889999999999999999999998531  


Q ss_pred             CCcccccccHHHHHHHHHHHHHHHhc
Q 014997          277 YDRTARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       277 ~~~~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                             ..+..|..||+.+|.||..
T Consensus       288 -------~~~~~A~~~g~~aa~~i~~  306 (311)
T 2q0l_A          288 -------KQVVCAASDGATAALSVIS  306 (311)
T ss_dssp             -------CCHHHHHHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHhHHHHHHHHHH
Confidence                   2577899999999999874

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=99.96  E-value=1.5e-29  Score=240.56  Aligned_cols=247  Identities=20%  Similarity=0.239  Sum_probs=175.6

Q ss_pred             CCCCCCcc-ccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCC--CEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCC
Q 014997           35 ARLPGFHT-CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL  111 (414)
Q Consensus        35 ~~l~~~~~-~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~--~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~  111 (414)
                      +++|+++. +++.++..+..+.+++.++++... .|..+....  ..+.+.++.++.||+||||||++|+. |.+||.+.
T Consensus        54 ~~~~g~~~~i~~~~l~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~~~~~-~~ipG~~~  131 (314)
T 4a5l_A           54 ENFPGFPNGIDGNELMMNMRTQSEKYGTTIITE-TIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGATAKR-MHVPGEDK  131 (314)
T ss_dssp             CCSTTCTTCEEHHHHHHHHHHHHHHTTCEEECC-CEEEEECSSSSEEEEETTCCEEEEEEEEECCCEEECC-CCCTTHHH
T ss_pred             hhccCCcccCCHHHHHHHHHHHHhhcCcEEEEe-EEEEeecCCCceEEEECCCeEEEEeEEEEcccccccc-cCCCcccc
Confidence            44555543 344444455566778889998875 676666544  46778888999999999999999874 45566432


Q ss_pred             CCEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcE
Q 014997          112 PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK  191 (414)
Q Consensus       112 ~gv~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~  191 (414)
                      ...........+.. .....++++++|||+|++|+|+|..|+++|.+||++++.+.+..   .+.   ...+.....+++
T Consensus       132 ~~~~~~~~~~~~~~-~~~~~~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~~~---~~~---~~~~~~~~~~~~  204 (314)
T 4a5l_A          132 YWQNGVSACAICDG-AVPIFRNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAFRA---SKT---MQERVLNHPKIE  204 (314)
T ss_dssp             HBTTTEESCHHHHT-TSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS---CHH---HHHHHHTCTTEE
T ss_pred             ccccceeeehhhhh-hhhhcCCCeEEEECCChHHHHHHHHHHHhCCeeeeecccccccc---cch---hhhhhhccccee
Confidence            21111111222222 12234689999999999999999999999999999998776543   222   233455677899


Q ss_pred             EEcCceEEEEEecCCCcEEEEE-----eCCCcEEecCEEEEccCCcCCChhhhhcCCcccCCCEEEcCCCCCCCCcEEEE
Q 014997          192 FVKGASIKNLEAGSDGRVAAVK-----LEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAI  266 (414)
Q Consensus       192 i~~~~~v~~i~~~~~~~~~~v~-----~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~g~i~vd~~~~t~~~~IyA~  266 (414)
                      .+....+.++.... .....+.     ..+++++++|.|++++|.+||+++++.. +..+++++.||+++|||+|||||+
T Consensus       205 ~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~i~~d~vi~a~G~~pn~~~l~~~-~~~~~~G~iv~~~~~Ts~pgIyA~  282 (314)
T 4a5l_A          205 VIWNSELVELEGDG-DLLNGAKIHNLVSGEYKVVPVAGLFYAIGHSPNSKFLGGQ-VKTADDGYILTEGPKTSVDGVFAC  282 (314)
T ss_dssp             EECSEEEEEEEESS-SSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTS-SCBCTTSCBCCBTTBCSSTTEEEC
T ss_pred             eEeeeeeEEEEeee-eccceeEEeecccccceeeccccceEecccccChhHhccc-ceEcCCeeEeCCCCccCCCCEEEE
Confidence            99998888887542 2222333     2445689999999999999999988654 444445666999999999999999


Q ss_pred             ccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 014997          267 GDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  301 (414)
Q Consensus       267 GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~  301 (414)
                      |||+..+..         ++..|..+|+.||.++.
T Consensus       283 GDv~~~~~~---------~~~~A~~~G~~AA~~~~  308 (314)
T 4a5l_A          283 GDVCDRVYR---------QAIVAAGSGCMAALSCE  308 (314)
T ss_dssp             STTTCSSCC---------CHHHHHHHHHHHHHHHH
T ss_pred             EeccCCcch---------HHHHHHHHHHHHHHHHH
Confidence            999986542         34568889999988775

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=99.96  E-value=2.6e-28  Score=233.47  Aligned_cols=225  Identities=20%  Similarity=0.276  Sum_probs=174.9

Q ss_pred             CHhHHHHcCCeEEcCCcEEEEeCC--C---CEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCC---CCEEEecCHHHH
Q 014997           52 TPEWYKEKGIEMIYQDPVTSIDIE--K---QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADA  123 (414)
Q Consensus        52 ~~~~~~~~~i~~~~~~~V~~id~~--~---~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~---~gv~~~~~~~~~  123 (414)
                      ..+++++.+++++. .+|+.++.+  +   ..|.+.+|+++.||+||+|||++++. |.+++.+.   .++++...    
T Consensus        71 l~~~~~~~gv~~~~-~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~-~~i~g~~~~~~~~~~~~~~----  144 (325)
T 2q7v_A           71 MHQQAEKFGAKVEM-DEVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPRK-LGIPGEDNFWGKGVSTCAT----  144 (325)
T ss_dssp             HHHHHHHTTCEEEE-CCEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEECC-CCCTTTTTTBTTTEESCHH----
T ss_pred             HHHHHHHcCCEEEe-eeEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCcCC-CCCCChhhccCceEEEecc----
Confidence            34566778999998 589999876  4   47778888899999999999998764 44555431   34544321    


Q ss_pred             HHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEe
Q 014997          124 DALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  203 (414)
Q Consensus       124 ~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~  203 (414)
                        .......+++++|||+|.+|+|+|..|+++|.+|+++++.+.+..   ++.+   ..+.+++.||+++++++++++..
T Consensus       145 --~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---~~~~---~~~l~~~~gv~i~~~~~v~~i~~  216 (325)
T 2q7v_A          145 --CDGFFYKGKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLRA---NKVA---QARAFANPKMKFIWDTAVEEIQG  216 (325)
T ss_dssp             --HHGGGGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCS---CHHH---HHHHHTCTTEEEECSEEEEEEEE
T ss_pred             --CCHHHcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCCc---chHH---HHHHHhcCCceEecCCceEEEcc
Confidence              122345689999999999999999999999999999999886542   3332   22333446999999999999985


Q ss_pred             cCCCcEEEEEeC---CCc--EEecCEEEEccCCcCCChhhhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccC
Q 014997          204 GSDGRVAAVKLE---DGS--TIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMY  277 (414)
Q Consensus       204 ~~~~~~~~v~~~---~g~--~i~~D~vi~a~G~~p~~~~l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~  277 (414)
                      +  +.+..+.+.   +|+  +++||.||+|+|++|+.+++++. +..+ +|+|.||++++|+.|+|||+|||+..+.   
T Consensus       217 ~--~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~-~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~---  290 (325)
T 2q7v_A          217 A--DSVSGVKLRNLKTGEVSELATDGVFIFIGHVPNTAFVKDT-VSLRDDGYVDVRDEIYTNIPMLFAAGDVSDYIY---  290 (325)
T ss_dssp             S--SSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTT-SCBCTTSCBCCBTTTBCSSTTEEECSTTTCSSC---
T ss_pred             C--CcEEEEEEEECCCCcEEEEEcCEEEEccCCCCChHHHhhh-cccCCCccEecCCCCccCCCCEEEeecccCccH---
Confidence            3  445456664   665  79999999999999999988876 6654 6789999999999999999999998631   


Q ss_pred             CcccccccHHHHHHHHHHHHHHHhc
Q 014997          278 DRTARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       278 ~~~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                            ..+..|..||+.+|.||.+
T Consensus       291 ------~~~~~A~~~g~~aa~~i~~  309 (325)
T 2q7v_A          291 ------RQLATSVGAGTRAAMMTER  309 (325)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHHHHHHHH
Confidence                  1577899999999999875

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=99.96  E-value=4.2e-29  Score=239.56  Aligned_cols=227  Identities=17%  Similarity=0.251  Sum_probs=174.7

Q ss_pred             CCCHhHHHHcCCeEEcCCcEEEEeCCCCEEEe-----CCCcEEecCeEEEccCCCCCCCCCCCCCC---CCCEEEecCHH
Q 014997           50 RQTPEWYKEKGIEMIYQDPVTSIDIEKQTLIT-----NSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVA  121 (414)
Q Consensus        50 ~~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~-----~~g~~~~yd~LviAtG~~~~~~~~~~g~~---~~gv~~~~~~~  121 (414)
                      ....+++++.+++++.++ |+.++++.+.+.+     +++..+.||+||+|||+++. .|.++|.+   ..++++.    
T Consensus        88 ~~~~~~~~~~gv~i~~~~-v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~~-~~~~~g~~~~~~~~~~~~----  161 (338)
T 3itj_A           88 DRMREQSTKFGTEIITET-VSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASAK-RMHLPGEETYWQKGISAC----  161 (338)
T ss_dssp             HHHHHHHHHTTCEEECSC-EEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEEEC-CCCCTTHHHHBTTTEESC----
T ss_pred             HHHHHHHHHcCCEEEEeE-EEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCCcC-CCCCCCchhccCccEEEc----
Confidence            344566778899999986 9999988765544     46778999999999999876 34445522   1234332    


Q ss_pred             HHHHHHHh--hcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhC-CcEEEcCceE
Q 014997          122 DADALISS--LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN-GVKFVKGASI  198 (414)
Q Consensus       122 ~~~~~~~~--~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~-gv~i~~~~~v  198 (414)
                        ......  ...+++++|||+|.+|+|+|..|+++|.+|+++++.+.++.       ...+.+.+.+. ||++++++.+
T Consensus       162 --~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~-------~~~~~~~l~~~~gv~i~~~~~v  232 (338)
T 3itj_A          162 --AVCDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA-------STIMQKRAEKNEKIEILYNTVA  232 (338)
T ss_dssp             --HHHHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS-------CHHHHHHHHHCTTEEEECSEEE
T ss_pred             --hhcccchhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC-------CHHHHHHHHhcCCeEEeeccee
Confidence              122222  34689999999999999999999999999999999987654       22344555554 9999999999


Q ss_pred             EEEEecCCCcEEEEEeCC-----CcEEecCEEEEccCCcCCChhhhhcCCccc-CCCEEE-cCCCCCCCCcEEEEccccc
Q 014997          199 KNLEAGSDGRVAAVKLED-----GSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQV-DGQFRTRMPGIFAIGDVAA  271 (414)
Q Consensus       199 ~~i~~~~~~~~~~v~~~~-----g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~-~g~i~v-d~~~~t~~~~IyA~GD~a~  271 (414)
                      +++..+ ++.+..+.+.+     +++++||.||+++|++|+..+++. ++..+ +|+|.| |++++|+.|+|||+|||+.
T Consensus       233 ~~i~~~-~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~-~l~~~~~G~i~v~~~~~~t~~~~vya~GD~~~  310 (338)
T 3itj_A          233 LEAKGD-GKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAG-QVDTDEAGYIKTVPGSSLTSVPGFFAAGDVQD  310 (338)
T ss_dssp             EEEEES-SSSEEEEEEEETTTTEEEEEECSEEEECSCEEECCGGGBT-TBCBCTTSCBCCCTTSSBCSSTTEEECGGGGC
T ss_pred             EEEEcc-cCcEEEEEEEECCCCceEEEEeCEEEEEeCCCCChhHhhC-ceEecCCCcEEEcCcccccCCCCEEEeeccCC
Confidence            999865 44455666655     467999999999999999888876 77764 677875 7899999999999999997


Q ss_pred             cCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997          272 FPLKMYDRTARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       272 ~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                      .+.         ..+..|..+|+.||.+|..
T Consensus       311 ~~~---------~~~~~A~~~g~~aa~~i~~  332 (338)
T 3itj_A          311 SKY---------RQAITSAGSGCMAALDAEK  332 (338)
T ss_dssp             SSC---------CCHHHHHHHHHHHHHHHHH
T ss_pred             CCc---------cceeeehhhhHHHHHHHHH
Confidence            432         2567799999999999874

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=99.96  E-value=1.8e-28  Score=233.74  Aligned_cols=229  Identities=20%  Similarity=0.276  Sum_probs=179.8

Q ss_pred             CHhHHHHcCCeEEcCCcEEEEeCCCCEEE-eCCCcEEecCeEEEccCCCCCCCCCCCCCC---CCCEEEecCHHHHHHHH
Q 014997           52 TPEWYKEKGIEMIYQDPVTSIDIEKQTLI-TNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALI  127 (414)
Q Consensus        52 ~~~~~~~~~i~~~~~~~V~~id~~~~~V~-~~~g~~~~yd~LviAtG~~~~~~~~~~g~~---~~gv~~~~~~~~~~~~~  127 (414)
                      ..+++++.+++++.+ +|+.++.+.+.+. +.++.++.||+||+|||+++.. |.+++.+   ..++++..      ...
T Consensus        68 ~~~~~~~~~~~~~~~-~v~~i~~~~~~~~v~~~~~~~~~~~lv~AtG~~~~~-~~~~g~~~~~~~~~~~~~------~~~  139 (320)
T 1trb_A           68 MHEHATKFETEIIFD-HINKVDLQNRPFRLNGDNGEYTCDALIIATGASARY-LGLPSEEAFKGRGVSACA------TSD  139 (320)
T ss_dssp             HHHHHHHTTCEEECC-CEEEEECSSSSEEEEESSCEEEEEEEEECCCEEECC-CCCHHHHHTBTTTEESCH------HHH
T ss_pred             HHHHHHHCCCEEEEe-eeeEEEecCCEEEEEeCCCEEEcCEEEECCCCCcCC-CCCCChHHhCCceeEecc------cCC
Confidence            345667789999997 5999998765443 5678889999999999998763 4444422   13444332      122


Q ss_pred             HhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCC
Q 014997          128 SSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG  207 (414)
Q Consensus       128 ~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~  207 (414)
                      ..+..+++++|||+|.+|+|+|..|+++|.+|+++++.+.+.   .++.+.+.+.+.+++.||++++++.++++..+ ++
T Consensus       140 ~~~~~~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~-~~  215 (320)
T 1trb_A          140 GFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR---AEKILIKRLMDKVENGNIILHTNRTLEEVTGD-QM  215 (320)
T ss_dssp             GGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC---CCHHHHHHHHHHHHTSSEEEECSCEEEEEEEC-SS
T ss_pred             ccccCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCccc---cCHHHHHHHHHhcccCCeEEEcCceeEEEEcC-CC
Confidence            234578999999999999999999999999999999988764   36677788888899999999999999999864 34


Q ss_pred             cEEEEEeCC----C--cEEecCEEEEccCCcCCChhhhhcCCcccCCCEEEcCCC-----CCCCCcEEEEccccccCCcc
Q 014997          208 RVAAVKLED----G--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQF-----RTRMPGIFAIGDVAAFPLKM  276 (414)
Q Consensus       208 ~~~~v~~~~----g--~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~g~i~vd~~~-----~t~~~~IyA~GD~a~~~~~~  276 (414)
                      .+..+.+.+    |  ++++||.||+|+|++|+.++++ .++..++|+|.||+++     +|+.|+|||+|||+..+.. 
T Consensus       216 ~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~~~-~~l~~~~G~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~-  293 (320)
T 1trb_A          216 GVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFE-GQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYR-  293 (320)
T ss_dssp             SEEEEEEECCTTCCCCEEEECSEEEECSCEEESCGGGT-TTSCEETTEECCCCSSSSCTTBCSSTTEEECGGGGCSSSC-
T ss_pred             ceEEEEEEeccCCCceEEEEcCEEEEEeCCCCChHHhc-ccccccCceEEECCCcccccccCCCCCEEEcccccCCcch-
Confidence            555566654    4  5799999999999999988876 4566557889999987     7999999999999986421 


Q ss_pred             CCcccccccHHHHHHHHHHHHHHHhc
Q 014997          277 YDRTARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       277 ~~~~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                              .+..|..+|+.||.+|..
T Consensus       294 --------~~~~A~~~g~~aa~~i~~  311 (320)
T 1trb_A          294 --------QAITSAGTGCMAALDAER  311 (320)
T ss_dssp             --------CHHHHHHHHHHHHHHHHH
T ss_pred             --------hhhhhhccHHHHHHHHHH
Confidence                    466788999999998864

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=99.96  E-value=3.1e-28  Score=232.25  Aligned_cols=225  Identities=24%  Similarity=0.291  Sum_probs=176.5

Q ss_pred             CHhHHHHcCCeEEcCCcEEEEeCCCC--EEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCC---CCEEEecCHHHHHHH
Q 014997           52 TPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADAL  126 (414)
Q Consensus        52 ~~~~~~~~~i~~~~~~~V~~id~~~~--~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~---~gv~~~~~~~~~~~~  126 (414)
                      ..+++++.+++++. .+|+.++.+.+  .|.+ ++.++.||+||+|||+.++. +.+++.+.   .++++..+      .
T Consensus        78 ~~~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~-~~~~~~~~~li~AtG~~~~~-~~i~g~~~~~~~~~~~~~~------~  148 (319)
T 3cty_A           78 FADHAANYAKIREG-VEVRSIKKTQGGFDIET-NDDTYHAKYVIITTGTTHKH-LGVKGESEYFGKGTSYCST------C  148 (319)
T ss_dssp             HHHHHHTTSEEEET-CCEEEEEEETTEEEEEE-SSSEEEEEEEEECCCEEECC-CCCBTTTTTBTTTEESCHH------H
T ss_pred             HHHHHHHcCCEEEE-eeEEEEEEeCCEEEEEE-CCCEEEeCEEEECCCCCccc-CCCCChHHhCCceEEEEEe------c
Confidence            34556678999998 68999987665  5666 56679999999999998764 44455321   35554321      1


Q ss_pred             HHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCC
Q 014997          127 ISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD  206 (414)
Q Consensus       127 ~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~  206 (414)
                      ......+++++|||+|.+|+|+|..|+++|.+|+++++.+.+..   ++.    +.+.+++.||++++++.++++..+ +
T Consensus       149 ~~~~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~~---~~~----l~~~l~~~gv~i~~~~~v~~i~~~-~  220 (319)
T 3cty_A          149 DGYLFKGKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMC---ENA----YVQEIKKRNIPYIMNAQVTEIVGD-G  220 (319)
T ss_dssp             HGGGGBTSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCCS---CHH----HHHHHHHTTCCEECSEEEEEEEES-S
T ss_pred             chhhcCCCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccCC---CHH----HHHHHhcCCcEEEcCCeEEEEecC-C
Confidence            22245679999999999999999999999999999999876532   333    445567899999999999999864 3


Q ss_pred             CcEEEEEeC---CCc--EEecCEEEEccCCcCCChhhhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcc
Q 014997          207 GRVAAVKLE---DGS--TIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRT  280 (414)
Q Consensus       207 ~~~~~v~~~---~g~--~i~~D~vi~a~G~~p~~~~l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~  280 (414)
                      +++..+.+.   +|+  +++||.||+|+|++|+.+++++.|+..+ +|+|.||++++|+.|+|||+|||+..+.      
T Consensus       221 ~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~------  294 (319)
T 3cty_A          221 KKVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLKDSGVKLDERGYIVVDSRQRTSVPGVYAAGDVTSGNF------  294 (319)
T ss_dssp             SSEEEEEEEETTTCCEEEECCSEEEECCCEEECCGGGTTSCCCBCTTSCBCCCTTCBCSSTTEEECSTTBTTCC------
T ss_pred             ceEEEEEEEEcCCCceEEEecCEEEEeeCCccChHHHhhccccccCCccEeCCCCCccCCCCEEEeecccCcch------
Confidence            445556664   665  6999999999999999999998888764 5889999999999999999999998532      


Q ss_pred             cccccHHHHHHHHHHHHHHHhc
Q 014997          281 ARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       281 ~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                         ..+..|..+|+.||.||..
T Consensus       295 ---~~~~~A~~~g~~aa~~i~~  313 (319)
T 3cty_A          295 ---AQIASAVGDGCKAALSLYS  313 (319)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHH
T ss_pred             ---hhHHHHHHHHHHHHHHHHH
Confidence               1577799999999999874

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=99.96  E-value=1.9e-28  Score=232.72  Aligned_cols=227  Identities=22%  Similarity=0.238  Sum_probs=173.7

Q ss_pred             CCHhHHHHcCCeEEcCCcEEEEeCCC----CEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCC---CCEEEecCHHHH
Q 014997           51 QTPEWYKEKGIEMIYQDPVTSIDIEK----QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADA  123 (414)
Q Consensus        51 ~~~~~~~~~~i~~~~~~~V~~id~~~----~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~---~gv~~~~~~~~~  123 (414)
                      ...+++++.+++++.+ +|+.+ ++.    ..+.+..+.++.||+||+|||+.+. .|.++|...   +++++..     
T Consensus        67 ~~~~~~~~~~v~~~~~-~v~~i-~~~~~~~~~v~~~~~~~~~~d~lvlAtG~~~~-~~~~~g~~~~~~~~~~~~~-----  138 (315)
T 3r9u_A           67 PWSEQCMRFGLKHEMV-GVEQI-LKNSDGSFTIKLEGGKTELAKAVIVCTGSAPK-KAGFKGEDEFFGKGVSTCA-----  138 (315)
T ss_dssp             HHHHHHTTTCCEEECC-CEEEE-EECTTSCEEEEETTSCEEEEEEEEECCCEEEC-CCCCBTTTTTBTTTEESCH-----
T ss_pred             HHHHHHHHcCcEEEEE-EEEEE-ecCCCCcEEEEEecCCEEEeCEEEEeeCCCCC-CCCCCChhhcCCCeEEeee-----
Confidence            3455667789999997 89999 443    3421332228999999999999876 455566443   4554432     


Q ss_pred             HHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEe
Q 014997          124 DALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  203 (414)
Q Consensus       124 ~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~  203 (414)
                       ........+++++|||+|.+|+|+|..|++++.+|+++++.+++..   ++.   .+.+.+++.||++++++.+.++..
T Consensus       139 -~~~~~~~~~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~~---~~~---~~~~~~~~~gv~~~~~~~v~~i~~  211 (315)
T 3r9u_A          139 -TCDGFFYKNKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEFRA---APS---TVEKVKKNEKIELITSASVDEVYG  211 (315)
T ss_dssp             -HHHGGGGTTSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCBS---CHH---HHHHHHHCTTEEEECSCEEEEEEE
T ss_pred             -cccccccCcCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCCC---CHH---HHHHHHhcCCeEEEeCcEEEEEEc
Confidence             2223345789999999999999999999999999999999887632   333   344556789999999999999985


Q ss_pred             cCCCcEEEEEeC--CCc--EEecCEEEEccCCcCCChhhhh---cC-Cccc-CCCEEEcCCCCCCCCcEEEEccccccCC
Q 014997          204 GSDGRVAAVKLE--DGS--TIDADTIVIGIGAKPTVSPFER---VG-LNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPL  274 (414)
Q Consensus       204 ~~~~~~~~v~~~--~g~--~i~~D~vi~a~G~~p~~~~l~~---~g-l~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~  274 (414)
                      + ++.+..+.+.  +|+  ++++|.||+++|++|+..+++.   +| +..+ +|+|.||++++|+.|+|||+|||+..+.
T Consensus       212 ~-~~~~~~v~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~g~l~~~~~g~i~vd~~~~t~~~~v~a~GD~~~~~~  290 (315)
T 3r9u_A          212 D-KMGVAGVKVKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLKMQTSVAGLFAAGDLRKDAP  290 (315)
T ss_dssp             E-TTEEEEEEEECTTSCEEEECCSCEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTCBCSSTTEEECGGGBTTCC
T ss_pred             C-CCcEEEEEEEcCCCCeEEeecCeEEEEEcCCCCchhhhcccccceeeecCCCcEEeCCCcccCCCCEEEeecccCCch
Confidence            4 4455556655  775  7999999999999999888765   54 7764 5889999999999999999999986432


Q ss_pred             ccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997          275 KMYDRTARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       275 ~~~~~~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                               ..+..|..+|+.||.+|..
T Consensus       291 ---------~~~~~A~~~g~~aa~~i~~  309 (315)
T 3r9u_A          291 ---------KQVICAAGDGAVAALSAMA  309 (315)
T ss_dssp             ---------CCHHHHHHHHHHHHHHHHH
T ss_pred             ---------hhhhhHHhhHHHHHHHHHH
Confidence                     2577899999999999874

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=99.96  E-value=7.8e-28  Score=230.74  Aligned_cols=226  Identities=19%  Similarity=0.260  Sum_probs=171.8

Q ss_pred             CHhHHHHcCCeEEcCCcEEEEeCCCC--EEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCC-------CCEEEecCHHH
Q 014997           52 TPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL-------PGVHYIRDVAD  122 (414)
Q Consensus        52 ~~~~~~~~~i~~~~~~~V~~id~~~~--~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~-------~gv~~~~~~~~  122 (414)
                      ..+++++.+++++.++ |+.++.+.+  +|++ +|+++.||+||+|||+++.. |.+++...       .++++.     
T Consensus        76 l~~~~~~~gv~~~~~~-v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~~~~~-~~~~g~~~~~~~~~~~~~~~~-----  147 (333)
T 1vdc_A           76 FRKQSERFGTTIFTET-VTKVDFSSKPFKLFT-DSKAILADAVILAIGAVAKR-LSFVGSGEVLGGFWNRGISAC-----  147 (333)
T ss_dssp             HHHHHHHTTCEEECCC-CCEEECSSSSEEEEC-SSEEEEEEEEEECCCEEECC-CCCBTCSSSSSCCBTTTEESC-----
T ss_pred             HHHHHHHCCCEEEEeE-EEEEEEcCCEEEEEE-CCcEEEcCEEEECCCCCcCC-CCCCCccccccccccCcEEEe-----
Confidence            3456677899999975 999998765  6777 77889999999999998764 44555432       233322     


Q ss_pred             HHHHHHhh--cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEE
Q 014997          123 ADALISSL--EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKN  200 (414)
Q Consensus       123 ~~~~~~~~--~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~  200 (414)
                       ..+...+  ..+++|+|||+|.+|+|+|..|+++|.+|+++++.+.+..   .+.+   ..+.+++.||++++++.+++
T Consensus       148 -~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~---~~~~---~~~~~~~~gv~i~~~~~v~~  220 (333)
T 1vdc_A          148 -AVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA---SKIM---QQRALSNPKIDVIWNSSVVE  220 (333)
T ss_dssp             -HHHHTTSGGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS---CHHH---HHHHHTCTTEEEECSEEEEE
T ss_pred             -ccCccchhhcCCCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCCc---cHHH---HHHHHhCCCeeEecCCceEE
Confidence             1222222  5689999999999999999999999999999999886542   2222   22445678999999999999


Q ss_pred             EEecCCC-cEEEEEeC---CC--cEEecCEEEEccCCcCCChhhhhcCCccc-CCCEEEcCC-CCCCCCcEEEEcccccc
Q 014997          201 LEAGSDG-RVAAVKLE---DG--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQ-FRTRMPGIFAIGDVAAF  272 (414)
Q Consensus       201 i~~~~~~-~~~~v~~~---~g--~~i~~D~vi~a~G~~p~~~~l~~~gl~~~-~g~i~vd~~-~~t~~~~IyA~GD~a~~  272 (414)
                      +..++++ .+..+.+.   +|  ++++||.||+++|++|+.++++ .++..+ +|+|.||++ ++|+.|+|||+|||+..
T Consensus       221 i~~~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~-~~l~~~~~G~i~vd~~~~~t~~~~vya~GD~~~~  299 (333)
T 1vdc_A          221 AYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLD-GGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDK  299 (333)
T ss_dssp             EEESSSSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGT-TSSCBCTTSCBCCCTTSCBCSSTTEEECGGGGCS
T ss_pred             EeCCCCccceeeEEEEecCCCceEEEecCEEEEEeCCccchHHhh-ccccccCCCCEEechhhcccCCCCEEEeeeccCC
Confidence            9865321 45455554   45  5799999999999999988876 467654 678999987 68999999999999986


Q ss_pred             CCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997          273 PLKMYDRTARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       273 ~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                      +..         .+..|..+|+.||.+|..
T Consensus       300 ~~~---------~~~~A~~~g~~aa~~i~~  320 (333)
T 1vdc_A          300 KYR---------QAITAAGTGCMAALDAEH  320 (333)
T ss_dssp             SCC---------CHHHHHHHHHHHHHHHHH
T ss_pred             Cch---------hHHHHHHhHHHHHHHHHH
Confidence            421         566788999999988874

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=99.95  E-value=1.3e-27  Score=232.33  Aligned_cols=232  Identities=17%  Similarity=0.184  Sum_probs=173.2

Q ss_pred             hHHHHcCCeEEcCCcEEEEeCCC--CEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhc
Q 014997           54 EWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE  131 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~~id~~~--~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~  131 (414)
                      .++++.+++++.+++|++++++.  ..|.+.++ ++.||+||+|||+.+.  |.+++   ..+.+...+.+.     ...
T Consensus        96 ~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~d~vVlAtG~~~~--p~ip~---~~~~~~~~~~~~-----~~~  164 (369)
T 3d1c_A           96 VVANHYELNIFENTVVTNISADDAYYTIATTTE-TYHADYIFVATGDYNF--PKKPF---KYGIHYSEIEDF-----DNF  164 (369)
T ss_dssp             HHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-CEEEEEEEECCCSTTS--BCCCS---SSCEEGGGCSCG-----GGS
T ss_pred             HHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCC-EEEeCEEEECCCCCCc--cCCCC---CceechhhcCCh-----hhc
Confidence            34567899999999999999763  57777777 5999999999999764  33333   222332211111     112


Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc------ccCHHHHHHHHHHHHhCC-cEEEcCceEEEEEec
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------LFTPSLAQRYEQLYQQNG-VKFVKGASIKNLEAG  204 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------~~~~~~~~~~~~~l~~~g-v~i~~~~~v~~i~~~  204 (414)
                      ++++|+|||+|.+|+|+|..|++.|.+|+++++.+.+++.      .+++...+.+.+.+++.| |++++++.|.+++..
T Consensus       165 ~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~~d~~~~~~~~~~~~l~~~l~~~g~v~~~~~~~v~~i~~~  244 (369)
T 3d1c_A          165 NKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARIEMNVHYTVKDIDFN  244 (369)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCEEEEECC----------CTTSCCHHHHHHHHHHHHTTCCEEEECSCCEEEEEEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCccCCHHHHHHHHHHHhhCCcEEEecCcEEEEEEec
Confidence            5789999999999999999999999999999999877642      245677788899999997 999999999999643


Q ss_pred             CCCcEEEEEeCCCcEEe-cCEEEEccCCcCCChhhhhcCCcccCCCEEEcCC-CCCCCCcEEEEccccccCCccCCcccc
Q 014997          205 SDGRVAAVKLEDGSTID-ADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQ-FRTRMPGIFAIGDVAAFPLKMYDRTAR  282 (414)
Q Consensus       205 ~~~~~~~v~~~~g~~i~-~D~vi~a~G~~p~~~~l~~~gl~~~~g~i~vd~~-~~t~~~~IyA~GD~a~~~~~~~~~~~~  282 (414)
                      ++ . ..+.+.+|+++. +|.+|+++|++|+.+++.+.++..++|++.||++ ++|+.|+|||+|||+..+....+    
T Consensus       245 ~~-~-~~v~~~~g~~~~~~d~vi~a~G~~~~~~~~~~~~~~~~~g~i~v~~~~~~t~~~~v~a~GD~~~~~~~~~~----  318 (369)
T 3d1c_A          245 NG-Q-YHISFDSGQSVHTPHEPILATGFDATKNPIVQQLFVTTNQDIKLTTHDESTRYPNIFMIGATVENDNAKLC----  318 (369)
T ss_dssp             TT-E-EEEEESSSCCEEESSCCEECCCBCGGGSHHHHHHSCCTTSCCCBCTTSBBSSSTTEEECSTTCCCSSCCCC----
T ss_pred             CC-c-eEEEecCCeEeccCCceEEeeccCCccchhhhhhccCCCCCEEechhhcccCCCCeEEeccccccCCeeEE----
Confidence            22 2 357788887665 6999999999999877776566544677999985 67899999999999987654322    


Q ss_pred             cccHHHHHHHHHHHHHHHhcCC
Q 014997          283 VEHVDHARQSAQHCIKALLSAQ  304 (414)
Q Consensus       283 ~~~~~~A~~~a~~aa~~i~~~~  304 (414)
                        .+..+.+||+.+|++|.+..
T Consensus       319 --~~~~~~~~a~~~a~~l~~~~  338 (369)
T 3d1c_A          319 --YIYKFRARFAVLAHLLTQRE  338 (369)
T ss_dssp             --SHHHHGGGHHHHHHHHHHHT
T ss_pred             --EEehhhHHHHHHHHHHhccc
Confidence              34467888999999998744

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.95  E-value=5.7e-27  Score=238.29  Aligned_cols=226  Identities=23%  Similarity=0.336  Sum_probs=178.1

Q ss_pred             CHhHHHHcCCeEEcCCcEEEEeCC-----CCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCC---CCCEEEecCHHHH
Q 014997           52 TPEWYKEKGIEMIYQDPVTSIDIE-----KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADA  123 (414)
Q Consensus        52 ~~~~~~~~~i~~~~~~~V~~id~~-----~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~---~~gv~~~~~~~~~  123 (414)
                      ..++++++|++++.+++|+.++++     ...|.+++|+++.||+||+|||++++. +.++|..   ..++++....   
T Consensus       273 l~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~~-~~ipG~~~~~~~~v~~~~~~---  348 (521)
T 1hyu_A          273 LKAHVSDYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRN-MNVPGEDQYRTKGVTYCPHC---  348 (521)
T ss_dssp             HHHHHHTSCEEEECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEECC-CCCTTTTTTTTTTEECCTTC---
T ss_pred             HHHHHHHcCCEEEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcCC-CCCCChhhhcCceEEEeecC---
Confidence            345567789999999999999864     457888899899999999999998764 4455542   2345544321   


Q ss_pred             HHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHh-CCcEEEcCceEEEEE
Q 014997          124 DALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ-NGVKFVKGASIKNLE  202 (414)
Q Consensus       124 ~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~-~gv~i~~~~~v~~i~  202 (414)
                         ......+++|+|||+|++|+|+|..|++.|.+|+++++.+++..   +    ..+.+.+++ .||++++++.++++.
T Consensus       349 ---~~~~~~~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~---~----~~l~~~l~~~~gV~v~~~~~v~~i~  418 (521)
T 1hyu_A          349 ---DGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA---D----QVLQDKVRSLKNVDIILNAQTTEVK  418 (521)
T ss_dssp             ---CGGGGBTSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCCS---C----HHHHHHHTTCTTEEEECSEEEEEEE
T ss_pred             ---chhhcCCCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccCc---C----HHHHHHHhcCCCcEEEeCCEEEEEE
Confidence               12234689999999999999999999999999999999887653   2    245566677 699999999999998


Q ss_pred             ecCCCcEEEEEeC---CCc--EEecCEEEEccCCcCCChhhhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCcc
Q 014997          203 AGSDGRVAAVKLE---DGS--TIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKM  276 (414)
Q Consensus       203 ~~~~~~~~~v~~~---~g~--~i~~D~vi~a~G~~p~~~~l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~  276 (414)
                      .+ ++++..+.+.   +|+  ++++|.|++++|.+||++++++ .+..+ +|+|.||++++|+.|+|||+|||+..+.. 
T Consensus       419 ~~-~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~-~l~~~~~G~I~Vd~~~~ts~p~VfA~GD~~~~~~~-  495 (521)
T 1hyu_A          419 GD-GSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEG-ALERNRMGEIIIDAKCETSVKGVFAAGDCTTVPYK-  495 (521)
T ss_dssp             EC-SSSEEEEEEEETTTCCEEEEECSEEEECCCEEESCGGGTT-TSCBCTTSCBCCCTTCBCSSTTEEECSTTBCCSSC-
T ss_pred             cC-CCcEEEEEEEeCCCCceEEEEcCEEEECcCCCCCchHHhh-hhccCCCCcEEeCCCCCCCCCCEEEeecccCCCcc-
Confidence            54 4555556664   353  6999999999999999998876 36554 67899999999999999999999986532 


Q ss_pred             CCcccccccHHHHHHHHHHHHHHHhc
Q 014997          277 YDRTARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       277 ~~~~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                              .+..|..+|..||.++..
T Consensus       496 --------~~~~A~~~g~~aa~~i~~  513 (521)
T 1hyu_A          496 --------QIIIATGEGAKASLSAFD  513 (521)
T ss_dssp             --------CHHHHHHHHHHHHHHHHH
T ss_pred             --------eeeehHHhHHHHHHHHHH
Confidence                    466788999999988864

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=99.95  E-value=8.6e-28  Score=227.89  Aligned_cols=219  Identities=14%  Similarity=0.106  Sum_probs=164.2

Q ss_pred             HHHHcC-CeEEcCCcEEEEeCC---CCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCC---CCCEEEecCHHHHHHHH
Q 014997           55 WYKEKG-IEMIYQDPVTSIDIE---KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALI  127 (414)
Q Consensus        55 ~~~~~~-i~~~~~~~V~~id~~---~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~---~~gv~~~~~~~~~~~~~  127 (414)
                      ++.+++ +.++. ..+..++..   .++|.+.+|+++.||+||||||++|+. |+++|.+   ..++++.      ....
T Consensus        69 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~g~~~~a~~liiATGs~p~~-p~i~G~~~~~~~~v~~~------~~~~  140 (304)
T 4fk1_A           69 EVMKYPSVHYYE-KTVVMITKQSTGLFEIVTKDHTKYLAERVLLATGMQEEF-PSIPNVREYYGKSLFSC------PYCD  140 (304)
T ss_dssp             HHTTSTTEEEEE-CCEEEEEECTTSCEEEEETTCCEEEEEEEEECCCCEEEC-CSCTTHHHHBTTTEESC------HHHH
T ss_pred             HHHhcCCEEEEe-eEEEEeeecCCCcEEEEECCCCEEEeCEEEEccCCcccc-ccccCccccccceeeec------cccc
Confidence            344444 55555 466666533   347889999999999999999999864 5555532   1234332      2223


Q ss_pred             HhhcCCCeEEEECCChH-HHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCC
Q 014997          128 SSLEKAKKVVVVGGGYI-GMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD  206 (414)
Q Consensus       128 ~~~~~~~~vvVvGgG~~-g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~  206 (414)
                      ....++++++|||||.. ++|+|..+++.+.+|+++.+.+.+..         .+.+.+++.|++++.+. +..+.. ++
T Consensus       141 ~~~~~~~~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~~~~~~---------~~~~~l~~~g~~~~~~~-v~~~~~-~~  209 (304)
T 4fk1_A          141 GWELKDQPLIIISENEDHTLHMTKLVYNWSTDLVIATNGNELSQ---------TIMDELSNKNIPVITES-IRTLQG-EG  209 (304)
T ss_dssp             SGGGTTSCEEEECCSHHHHHHHHHHHTTTCSCEEEECSSCCCCH---------HHHHHHHTTTCCEECSC-EEEEES-GG
T ss_pred             hhHhcCCceeeecCCCchhhhHHHHHHhCCceEEEEeccccchh---------hhhhhhhccceeEeeee-EEEeec-CC
Confidence            33446778888888864 67899989999999999988764432         34566888999999865 777764 35


Q ss_pred             CcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCccccccc
Q 014997          207 GRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEH  285 (414)
Q Consensus       207 ~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~  285 (414)
                      +.+..+.+++|+++++|.++++.|.+|+..+++++|++.+ +|+|.||+++|||.|||||+|||+..+..         +
T Consensus       210 ~~~~~v~~~~g~~i~~~~~vi~~g~~~~~~~~~~~g~~~~~~G~I~vd~~~~Ts~p~IyA~GDv~~~~~~---------~  280 (304)
T 4fk1_A          210 GYLKKVEFHSGLRIERAGGFIVPTFFRPNQFIEQLGCELQSNGTFVIDDFGRTSEKNIYLAGETTTQGPS---------S  280 (304)
T ss_dssp             GCCCEEEETTSCEECCCEEEECCEEECSSCHHHHTTCCCCTTSSSCSSTTCBCSSTTEEECSHHHHTSCC---------C
T ss_pred             CeeeeeeccccceeeecceeeeeccccCChhhhhcCeEECCCCCEEECcCCccCCCCEEEEeccCCCcch---------H
Confidence            6667899999999999999999988888889999999875 56799999999999999999999975422         4


Q ss_pred             HHHHHHHHHHHHHHHh
Q 014997          286 VDHARQSAQHCIKALL  301 (414)
Q Consensus       286 ~~~A~~~a~~aa~~i~  301 (414)
                      +..|..+|+.||.+|.
T Consensus       281 ~~~A~~~G~~AA~~i~  296 (304)
T 4fk1_A          281 LIIAASQGNKAAIAIN  296 (304)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            5668889999888775

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=99.95  E-value=7.5e-27  Score=224.38  Aligned_cols=225  Identities=18%  Similarity=0.304  Sum_probs=169.5

Q ss_pred             CHhHHHHcCCeEEcCCcEEEEeCCC-CEE-EeCCCcEEecCeEEEccCCCCCCCCCCCCCC---CCCEEEecCHHHHHHH
Q 014997           52 TPEWYKEKGIEMIYQDPVTSIDIEK-QTL-ITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADAL  126 (414)
Q Consensus        52 ~~~~~~~~~i~~~~~~~V~~id~~~-~~V-~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~---~~gv~~~~~~~~~~~~  126 (414)
                      ..+++++.+++++.++ |+.++..+ .+| .+++|+++.||+||+|||+++.. |.++|..   ..++++..      ..
T Consensus        77 l~~~~~~~~v~~~~~~-v~~i~~~~~~~v~~~~~g~~~~~d~lviAtG~~~~~-~~i~g~~~~~~~~~~~~~------~~  148 (335)
T 2a87_A           77 MREQALRFGADLRMED-VESVSLHGPLKSVVTADGQTHRARAVILAMGAAARY-LQVPGEQELLGRGVSSCA------TC  148 (335)
T ss_dssp             HHHHHHHTTCEEECCC-EEEEECSSSSEEEEETTSCEEEEEEEEECCCEEECC-CCCTHHHHTBTTTEESCH------HH
T ss_pred             HHHHHHHcCCEEEEee-EEEEEeCCcEEEEEeCCCCEEEeCEEEECCCCCccC-CCCCchHhccCCceEEee------cc
Confidence            3455677899999975 99998733 467 78888889999999999998763 4444422   13444322      12


Q ss_pred             HHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCC
Q 014997          127 ISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD  206 (414)
Q Consensus       127 ~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~  206 (414)
                      ...+..+++++|||+|.+|+|+|..|+++|.+|+++++.+++..   .+.+   ..+.+++.||++++++.++++..++ 
T Consensus       149 ~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~~---~~~~---~~~~~~~~gV~v~~~~~v~~i~~~~-  221 (335)
T 2a87_A          149 DGFFFRDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFRA---SKIM---LDRARNNDKIRFLTNHTVVAVDGDT-  221 (335)
T ss_dssp             HGGGGTTCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCSS---CTTH---HHHHHHCTTEEEECSEEEEEEECSS-
T ss_pred             chhhcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCCc---cHHH---HHHHhccCCcEEEeCceeEEEecCC-
Confidence            22345789999999999999999999999999999999887643   2222   1244577899999999999998542 


Q ss_pred             CcEEEEEeC---CC--cEEecCEEEEccCCcCCChhhhhcCCccc-CCCEEEcCC-CCCCCCcEEEEccccccCCccCCc
Q 014997          207 GRVAAVKLE---DG--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQ-FRTRMPGIFAIGDVAAFPLKMYDR  279 (414)
Q Consensus       207 ~~~~~v~~~---~g--~~i~~D~vi~a~G~~p~~~~l~~~gl~~~-~g~i~vd~~-~~t~~~~IyA~GD~a~~~~~~~~~  279 (414)
                       .+..+.+.   +|  ++++||.||+|+|++|++++++ .++..+ +|+|.||++ ++|+.|+|||+|||+..+..    
T Consensus       222 -~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~-~~l~~~~~G~i~vd~~~~~t~~~~iya~GD~~~~~~~----  295 (335)
T 2a87_A          222 -TVTGLRVRDTNTGAETTLPVTGVFVAIGHEPRSGLVR-EAIDVDPDGYVLVQGRTTSTSLPGVFAAGDLVDRTYR----  295 (335)
T ss_dssp             -SCCEEEEEEETTSCCEEECCSCEEECSCEEECCTTTB-TTBCBCTTSCBCCSTTSSBCSSTTEEECGGGTCCSCC----
T ss_pred             -cEeEEEEEEcCCCceEEeecCEEEEccCCccChhHhh-cccccCCCccEEeCCCCCccCCCCEEEeeecCCccHH----
Confidence             22234443   44  5799999999999999988876 466654 688999985 68999999999999985421    


Q ss_pred             ccccccHHHHHHHHHHHHHHHhc
Q 014997          280 TARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       280 ~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                           .+..|..+|+.||.++..
T Consensus       296 -----~~~~A~~~g~~aA~~i~~  313 (335)
T 2a87_A          296 -----QAVTAAGSGCAAAIDAER  313 (335)
T ss_dssp             -----CHHHHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHhHHHHHHHHHH
Confidence                 456688899999888863

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=99.94  E-value=1.9e-27  Score=237.93  Aligned_cols=231  Identities=16%  Similarity=0.138  Sum_probs=165.4

Q ss_pred             CHhHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHH----HH
Q 014997           52 TPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADA----LI  127 (414)
Q Consensus        52 ~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~----~~  127 (414)
                      ..+++++.+|+++.++.|      .+.|++++. .+.||+||||||+.+...|.++|.+.+++++.+++.....    ..
T Consensus        65 ~~~~~~~~gv~~~~~~~v------~~~V~~~~~-~~~~d~lVlAtGs~~~~~~~ipG~~~~gv~~~~~~~~~~~~~~d~~  137 (460)
T 1cjc_A           65 FTQTARSDRCAFYGNVEV------GRDVTVQEL-QDAYHAVVLSYGAEDHQALDIPGEELPGVFSARAFVGWYNGLPENR  137 (460)
T ss_dssp             HHHHHTSTTEEEEBSCCB------TTTBCHHHH-HHHSSEEEECCCCCEECCCCCTTTTSTTEEEHHHHHHHHTTCGGGT
T ss_pred             HHHHHHhCCcEEEeeeEE------eeEEEeccc-eEEcCEEEEecCcCCCCCCCCCCCCCCcEEEHHHHHHHhhcCcccc
Confidence            345667789999998665      234555443 4799999999999963346678877888888654422110    00


Q ss_pred             Hh--hcCCCeEEEECCChHHHHHHHHHH--------------------hCCC-cEEEEeeCCccc--------------c
Q 014997          128 SS--LEKAKKVVVVGGGYIGMEVAAAAV--------------------GWKL-DTTIIFPENHLL--------------Q  170 (414)
Q Consensus       128 ~~--~~~~~~vvVvGgG~~g~e~A~~l~--------------------~~g~-~Vtlv~~~~~~l--------------~  170 (414)
                      ..  ...+++++|||+|++|+|+|..|+                    +.+. +|+++.|.+.+.              +
T Consensus       138 ~~~~~~~~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~~~~ft~~el~~l~~lp  217 (460)
T 1cjc_A          138 ELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLP  217 (460)
T ss_dssp             TCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCCHHHHHHHHTCT
T ss_pred             ccccCCCCCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChHhhccCHHHHHHhhcCC
Confidence            00  015799999999999999999998                    5676 799999987651              1


Q ss_pred             c--------cc----------CHH---HHHHHHHHHHh--------------CCcEEEcCceEEEEEecCCC-cEEEEEe
Q 014997          171 R--------LF----------TPS---LAQRYEQLYQQ--------------NGVKFVKGASIKNLEAGSDG-RVAAVKL  214 (414)
Q Consensus       171 ~--------~~----------~~~---~~~~~~~~l~~--------------~gv~i~~~~~v~~i~~~~~~-~~~~v~~  214 (414)
                      .        .+          ++.   ..+.+.+.+++              +||++++++.+.+|..++++ .+..+.+
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~v~~v~~  297 (460)
T 1cjc_A          218 GTRPMLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPDGRRAAGIRL  297 (460)
T ss_dssp             TEEEECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHHTCSEEEEEECSEEEEEEEECTTSSSEEEEEE
T ss_pred             CceeEechhhhcchhhhhhhccHHHHHHHHHHHHHHHhccccccccCCCCCCceEEEECCCChheEEcCCCCceEEEEEE
Confidence            0        00          110   23344445555              89999999999999865335 5555554


Q ss_pred             C---------------CC--cEEecCEEEEccCCcCCChhhhhcCC-ccc-CCCEEEcCCCCCC-CCcEEEEccccccCC
Q 014997          215 E---------------DG--STIDADTIVIGIGAKPTVSPFERVGL-NSS-VGGIQVDGQFRTR-MPGIFAIGDVAAFPL  274 (414)
Q Consensus       215 ~---------------~g--~~i~~D~vi~a~G~~p~~~~l~~~gl-~~~-~g~i~vd~~~~t~-~~~IyA~GD~a~~~~  274 (414)
                      .               +|  ++++||+||+++|++|+. +   .|+ +.+ +++|.||+++||+ .|+|||+|||+..+.
T Consensus       298 ~~~~l~~~~~~~~~~~~g~~~~i~~d~Vi~a~G~~p~~-l---~gl~~~d~~g~i~vn~~~rt~~~p~vya~Gd~~~g~~  373 (460)
T 1cjc_A          298 AVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGYKSRP-I---DPSVPFDPKLGVVPNMEGRVVDVPGLYCSGWVKRGPT  373 (460)
T ss_dssp             EEEEEESSGGGCEEEEEEEEEEEECSEEEECCCEECCC-C---CTTSCCBTTTTBCCEETTEETTCTTEEECTHHHHCTT
T ss_pred             EEEEEccccCCCcccCCCceEEEEcCEEEECCCCCCCC-C---CCCcccccCCCeeECCCCcCcCCCCEEEEEeCCcCCC
Confidence            3               34  579999999999999996 3   566 654 5789999999998 799999999997543


Q ss_pred             ccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997          275 KMYDRTARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       275 ~~~~~~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                      .         .+..|+.+|..+|.+|++
T Consensus       374 ~---------~i~~a~~~g~~aa~~i~~  392 (460)
T 1cjc_A          374 G---------VITTTMTDSFLTGQILLQ  392 (460)
T ss_dssp             C---------CHHHHHHHHHHHHHHHHH
T ss_pred             c---------cHHHHHHHHHHHHHHHHH
Confidence            2         355688889988888875

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=99.94  E-value=2.5e-26  Score=250.14  Aligned_cols=242  Identities=18%  Similarity=0.225  Sum_probs=176.3

Q ss_pred             HhHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCC-CCCCCCCCCCCC-CCCEEEecCHHHHHHHHHh-
Q 014997           53 PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGC-TASRFPEKIGGY-LPGVHYIRDVADADALISS-  129 (414)
Q Consensus        53 ~~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~-~~~~~~~~~g~~-~~gv~~~~~~~~~~~~~~~-  129 (414)
                      .+++++.||++++++.+.     .+.|++++++.+.||+||||||+ .|+.++.++|.. .+++++..++......... 
T Consensus       245 ~~~~~~~gv~~~~~~~v~-----~~~v~~~~~~~~~~d~vvlAtGa~~p~~l~~~~G~~~~~gv~~a~~~L~~~~~~~~~  319 (1025)
T 1gte_A          245 IELMKDLGVKIICGKSLS-----ENEITLNTLKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKA  319 (1025)
T ss_dssp             HHHHHTTTCEEEESCCBS-----TTSBCHHHHHHTTCCEEEECCCCCEECCCGGGTTCCTTTTEEEHHHHHHHHHHHHCB
T ss_pred             HHHHHHCCcEEEcccEec-----cceEEhhhcCccCCCEEEEecCCCCCCCCCCCCCCCCCCCEEEhHHHHHHHHhhccc
Confidence            467888999999987662     23466666666899999999999 476554334432 4677764432221111100 


Q ss_pred             ---------hcCCCeEEEECCChHHHHHHHHHHhCCC-cEEEEeeCCc-ccccccCHHHHHHHHHHHHhCCcEEEcCceE
Q 014997          130 ---------LEKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASI  198 (414)
Q Consensus       130 ---------~~~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~-~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v  198 (414)
                               ...+++|+|||||++|+|+|..++++|. +||++++.++ +++ .+++++     +.+++.||++++++.+
T Consensus       320 ~~~~~~~~~~~~~~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~~~~~-~~~~e~-----~~~~~~Gv~~~~~~~~  393 (1025)
T 1gte_A          320 GMCACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIR-AVPEEV-----ELAKEEKCEFLPFLSP  393 (1025)
T ss_dssp             TTBSCCCCCCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCC-SCHHHH-----HHHHHTTCEEECSEEE
T ss_pred             ccccccccccccCCcEEEECCChHHHHHHHHHHHcCCCEEEEEEecChhhCC-CCHHHH-----HHHHHcCCEEEeCCCc
Confidence                     1236799999999999999999999996 8999999884 343 344443     4567889999999999


Q ss_pred             EEEEecCCCcEEEEEeC------CC---------cEEecCEEEEccCCcCC-Chhhhh-cCCccc-CCCEEEcC-CCCCC
Q 014997          199 KNLEAGSDGRVAAVKLE------DG---------STIDADTIVIGIGAKPT-VSPFER-VGLNSS-VGGIQVDG-QFRTR  259 (414)
Q Consensus       199 ~~i~~~~~~~~~~v~~~------~g---------~~i~~D~vi~a~G~~p~-~~~l~~-~gl~~~-~g~i~vd~-~~~t~  259 (414)
                      .++..+ ++.+..+++.      +|         +++++|.||+++|++|+ ..++.+ .|+..+ +|+|.||+ +++|+
T Consensus       394 ~~i~~~-~g~v~~v~~~~~~~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~~~~~~l~~~~~gl~~~~~G~I~vd~~~~~Ts  472 (1025)
T 1gte_A          394 RKVIVK-GGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTS  472 (1025)
T ss_dssp             EEEEEE-TTEEEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCS
T ss_pred             eEEEcc-CCeEEEEEEEEeEEcCCCCcccCCCceEEEECCEEEECCCCCCCchhhhhcccCceECCCCCEEECCCCCccC
Confidence            999753 5666555542      22         36999999999999864 556666 488875 67899997 89999


Q ss_pred             CCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhc------C-CCCCCCCCCceee
Q 014997          260 MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS------A-QTHTYDYLPYFYS  316 (414)
Q Consensus       260 ~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~------~-~~~~~~~~p~~~~  316 (414)
                      .|+|||+|||+..+.          .+..|..+|+.||++|.+      + ....++.+||||+
T Consensus       473 ~~~VfA~GD~~~~~~----------~~~~A~~~G~~aA~~i~~~L~~~~~~~~~~~~~~p~~~~  526 (1025)
T 1gte_A          473 EPWVFAGGDIVGMAN----------TTVESVNDGKQASWYIHKYIQAQYGASVSAKPELPLFYT  526 (1025)
T ss_dssp             STTEEECSGGGCSCC----------CHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCCBCCCCC
T ss_pred             CCCEEEeCCCCCCch----------HHHHHHHHHHHHHHHHHHHHHhccCCCcccCcCcccccc
Confidence            999999999997543          345588899999999874      1 2224678999998

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.94  E-value=2.8e-26  Score=221.31  Aligned_cols=227  Identities=17%  Similarity=0.259  Sum_probs=161.9

Q ss_pred             HhHHHHcCCeEEcCCcEEEEeCCCCE---EEeCCCcEEecCeEEEccCC--CCCCCCCCCCCC-CCCE-EEecCHHHHHH
Q 014997           53 PEWYKEKGIEMIYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGC--TASRFPEKIGGY-LPGV-HYIRDVADADA  125 (414)
Q Consensus        53 ~~~~~~~~i~~~~~~~V~~id~~~~~---V~~~~g~~~~yd~LviAtG~--~~~~~~~~~g~~-~~gv-~~~~~~~~~~~  125 (414)
                      .+++++.+++++++++|++++.+++.   |++++| ++.||+||+|||.  .|. .|.++|.. ..+. .+.....+   
T Consensus        83 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~~~~~~-~~~~~g~~~~~~~~~~~~~~~~---  157 (357)
T 4a9w_A           83 AQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGTWGEAY-TPEYQGLESFAGIQLHSAHYST---  157 (357)
T ss_dssp             HHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCSGGGBC-CCCCTTGGGCCSEEEEGGGCCC---
T ss_pred             HHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCCCCCCC-CCCCCCccccCCcEEEeccCCC---
Confidence            34456779999999999999987765   777777 7999999999996  443 34445532 2222 11111111   


Q ss_pred             HHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC-Cccccccc-CHHHHHHHHHHHH-----------------
Q 014997          126 LISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHLLQRLF-TPSLAQRYEQLYQ-----------------  186 (414)
Q Consensus       126 ~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~-~~~l~~~~-~~~~~~~~~~~l~-----------------  186 (414)
                        .....+++|+|||+|.+|+|+|..|++.+ +|+++.+. +.+++..+ +..+...+.+.+.                 
T Consensus       158 --~~~~~~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (357)
T 4a9w_A          158 --PAPFAGMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHEPAFLADDVDGRVLFERATERWKAQQEGREPDLPPGGFGD  234 (357)
T ss_dssp             --SGGGTTSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSCCCBCCTTCCTHHHHTC----------------------C
T ss_pred             --hhhcCCCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCCCeecchhhcCccHHHHHHHHHhccccccCCCcccccccC
Confidence              11236799999999999999999999998 69999987 45555432 2333333322222                 


Q ss_pred             -----------hCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhcCCcccCCCEEEcCC
Q 014997          187 -----------QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQ  255 (414)
Q Consensus       187 -----------~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~g~i~vd~~  255 (414)
                                 +.|+ +..+..+.+++..      .+.+.+|++++||.||+++|++|++++++++++..++|+|.||++
T Consensus       235 ~~~~~~~~~~~~~g~-i~~~~~v~~~~~~------~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~G~i~vd~~  307 (357)
T 4a9w_A          235 IVMVPPVLDARARGV-LAAVPPPARFSPT------GMQWADGTERAFDAVIWCTGFRPALSHLKGLDLVTPQGQVEVDGS  307 (357)
T ss_dssp             BCCCHHHHHHHHTTC-CCEECCCSEEETT------EEECTTSCEEECSEEEECCCBCCCCGGGTTTTCBCTTSCBCBCTT
T ss_pred             cccChhHHHHHhcCc-eEEecCcceEeCC------eeEECCCCEecCCEEEECCCcCCCCcccCcccccCCCCCccccCC
Confidence                       3444 4445566677633      578999999999999999999999999999999866788999999


Q ss_pred             --CCCCCCcEEEEc--cccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 014997          256 --FRTRMPGIFAIG--DVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA  303 (414)
Q Consensus       256 --~~t~~~~IyA~G--D~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~  303 (414)
                        ++|+.|+|||+|  ||+.....         .+..|..+|+.+|++|...
T Consensus       308 ~l~~t~~~~vya~Gd~d~~~~~~~---------~~~~A~~~g~~~a~~i~~~  350 (357)
T 4a9w_A          308 GLRALAVPSVWLLGYGDWNGMASA---------TLIGVTRYAREAVRQVTAY  350 (357)
T ss_dssp             SCBBSSCTTEEECSSCGGGSTTCS---------STTTHHHHHHHHHHHHHHH
T ss_pred             cccCCCCCCeEEeccccccccchh---------hhhhhHHHHHHHHHHHHHH
Confidence              899999999999  55552211         2334888999999988753

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=99.93  E-value=2.8e-26  Score=228.99  Aligned_cols=226  Identities=21%  Similarity=0.259  Sum_probs=166.9

Q ss_pred             CHhHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHH--H-
Q 014997           52 TPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALI--S-  128 (414)
Q Consensus        52 ~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~--~-  128 (414)
                      ..+++++.||++++++.|.      +.|.++++. +.||+||||||+.+.+.+.++|.+.+++++..++.......  . 
T Consensus       178 ~~~~l~~~gv~~~~~~~v~------~~v~~~~~~-~~~d~vvlAtG~~~~~~~~ipG~~~~gv~~a~~~l~~~~~~~~~~  250 (456)
T 2vdc_G          178 RVKLLADAGVIYHPNFEVG------RDASLPELR-RKHVAVLVATGVYKARDIKAPGSGLGNIVAALDYLTTSNKVSLGD  250 (456)
T ss_dssp             HHHHHHHTTCEEETTCCBT------TTBCHHHHH-SSCSEEEECCCCCEECCTTCSCCTTTTEEEHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHCCcEEEeCCEec------cEEEhhHhH-hhCCEEEEecCCCCCCCCCCCCCcCCCcEEHHHHHHHhhhhhccc
Confidence            4567888999999987652      234444443 68999999999973334556787788888754332222111  1 


Q ss_pred             ---------hhcCCCeEEEECCChHHHHHHHHHHhCCC-cEEEEeeCCcc-cccccCHHHHHHHHHHHHhCCcEEEcCce
Q 014997          129 ---------SLEKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGAS  197 (414)
Q Consensus       129 ---------~~~~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~-l~~~~~~~~~~~~~~~l~~~gv~i~~~~~  197 (414)
                               ....+++|+|||||++|+|+|..+.++|. +|++++|.+++ ++. .+.+     .+.+++.||++++++.
T Consensus       251 ~~~~~~~g~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~~~p~-~~~e-----~~~~~~~Gv~~~~~~~  324 (456)
T 2vdc_G          251 TVEAYENGSLNAAGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRKNMPG-SQRE-----VAHAEEEGVEFIWQAA  324 (456)
T ss_dssp             TCSSCCTTCSCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCSTTCSS-CHHH-----HHHHHHTTCEEECCSS
T ss_pred             ccccccccccccCCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCccCCCC-CHHH-----HHHHHHCCCEEEeCCC
Confidence                     01357899999999999999999999997 49999998865 442 2222     2456788999999999


Q ss_pred             EEEEEecCCCcEEEEEe---------C---------CC--cEEecCEEEEccCCcCCCh--hhhhcCCccc-CCCEEEcC
Q 014997          198 IKNLEAGSDGRVAAVKL---------E---------DG--STIDADTIVIGIGAKPTVS--PFERVGLNSS-VGGIQVDG  254 (414)
Q Consensus       198 v~~i~~~~~~~~~~v~~---------~---------~g--~~i~~D~vi~a~G~~p~~~--~l~~~gl~~~-~g~i~vd~  254 (414)
                      ++++..  ++++..+.+         .         +|  +++++|.||+|+|+.|+..  ++++.++..+ +|+|.||+
T Consensus       325 ~~~i~~--~g~v~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~aD~Vi~A~G~~p~~~~~~l~~~gl~~~~~G~i~vd~  402 (456)
T 2vdc_G          325 PEGFTG--DTVVTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLPNAFDEPELKVTRWGTLLVDH  402 (456)
T ss_dssp             SCCEEE--EEEEETTEEEEEEEEEEEECTTCCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHSTTSCBCTTSSBCCCT
T ss_pred             ceEEeC--CCcEEEEEEEEEEecccCCcCCccccccCCcEEEEECCEEEECCCCCCCcchhhcccCCeeECCCCCEEECC
Confidence            988864  333221221         1         23  4799999999999999876  7888888765 68899999


Q ss_pred             C-CCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997          255 Q-FRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       255 ~-~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                      + ++|+.|+|||+|||+..+.          .+..|+.+|+.||++|.+
T Consensus       403 ~~~~Ts~~~VfA~GD~~~g~~----------~v~~A~~~G~~aA~~i~~  441 (456)
T 2vdc_G          403 RTKMTNMDGVFAAGDIVRGAS----------LVVWAIRDGRDAAEGIHA  441 (456)
T ss_dssp             TTCBCSSTTEEECGGGGSSCC----------SHHHHHHHHHHHHHHHHH
T ss_pred             CCCcCCCCCEEEeccccCCch----------HHHHHHHHHHHHHHHHHH
Confidence            7 9999999999999987543          466799999999998874

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=99.92  E-value=7.7e-25  Score=237.00  Aligned_cols=219  Identities=13%  Similarity=0.149  Sum_probs=171.2

Q ss_pred             hHHHHc-CCeEEcCCcEEEEeCCCCEEEe-----------------CCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEE
Q 014997           54 EWYKEK-GIEMIYQDPVTSIDIEKQTLIT-----------------NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVH  115 (414)
Q Consensus        54 ~~~~~~-~i~~~~~~~V~~id~~~~~V~~-----------------~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~  115 (414)
                      +.+.+. +++++.+++|+.++.+++...+                 .++.++.||+||||||++++. +.++|.+.++++
T Consensus       189 ~~l~~~~~v~~~~~~~V~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~-~~ipG~~~~gv~  267 (965)
T 2gag_A          189 SELAEAEETTHLQRTTVFGSYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERP-IVFENNDRPGIM  267 (965)
T ss_dssp             HHHHHSTTEEEESSEEEEEEETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECC-CCCBTCCSTTEE
T ss_pred             HHHhhcCCcEEEeCCEEEeeecCCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccCC-CCCCCCCCCCEE
Confidence            344454 9999999999999876532211                 112368999999999999864 556888889998


Q ss_pred             EecCHHHHHHHHHh--hcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEE
Q 014997          116 YIRDVADADALISS--LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV  193 (414)
Q Consensus       116 ~~~~~~~~~~~~~~--~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~  193 (414)
                      +..++.+   +...  ..++++++|||+|++|+|+|..|+++|.+|+++++.+++++     .     .+.+++.||+++
T Consensus       268 ~~~~~~~---~l~~~~~~~gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~~-----~-----~~~l~~~GV~v~  334 (965)
T 2gag_A          268 LAGAVRS---YLNRYGVRAGARIAVATTNDSAYELVRELAATGGVVAVIDARSSISA-----A-----AAQAVADGVQVI  334 (965)
T ss_dssp             EHHHHHH---HHHTTCEESCSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCCH-----H-----HHHHHHTTCCEE
T ss_pred             EhHHHHH---HHHhcCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccch-----h-----HHHHHhCCeEEE
Confidence            7654432   2221  23578999999999999999999999999999999987653     1     456789999999


Q ss_pred             cCceEEEEEecCCCcEEEEEeCC-------C--cEEecCEEEEccCCcCCChhhhhcCCcccCCCEEEcCCCC-----CC
Q 014997          194 KGASIKNLEAGSDGRVAAVKLED-------G--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFR-----TR  259 (414)
Q Consensus       194 ~~~~v~~i~~~~~~~~~~v~~~~-------g--~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~g~i~vd~~~~-----t~  259 (414)
                      +++.++++..++++.+..|.+.+       |  ++++||.|++++|.+|++++++..     +++|.+|++++     |+
T Consensus       335 ~~~~v~~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~~l~~~~-----~g~i~vd~~~~~~v~~ts  409 (965)
T 2gag_A          335 SGSVVVDTEADENGELSAIVVAELDEARELGGTQRFEADVLAVAGGFNPVVHLHSQR-----QGKLDWDTTIHAFVPADA  409 (965)
T ss_dssp             ETEEEEEEEECTTSCEEEEEEEEECTTCCEEEEEEEECSEEEEECCEEECCHHHHHT-----TCCEEEETTTTEEEECSC
T ss_pred             eCCEeEEEeccCCCCEEEEEEEeccccCCCCceEEEEcCEEEECCCcCcChHHHHhC-----CCcEEEcCcccccccCCC
Confidence            99999999853245555666654       5  679999999999999999887664     36899999887     89


Q ss_pred             CCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997          260 MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       260 ~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                      .|+|||+|||+..+.           ...|..+|+.||.+|++
T Consensus       410 ~p~IyAaGD~a~~~~-----------l~~A~~~G~~aA~~i~~  441 (965)
T 2gag_A          410 VANQHLAGAMTGRLD-----------TASALSTGAATGAAAAT  441 (965)
T ss_dssp             CTTEEECGGGGTCCS-----------HHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEecCCchh-----------HHHHHHHHHHHHHHHHH
Confidence            999999999997532           23689999999999975

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=99.92  E-value=2.8e-24  Score=215.54  Aligned_cols=212  Identities=15%  Similarity=0.193  Sum_probs=161.5

Q ss_pred             hHHHHcCCe--EEcCCcEEEEeCCCC----EEEeCC---C--cEEecCeEEEccC--CCCCCCCCCCCCC-CCC-EEEec
Q 014997           54 EWYKEKGIE--MIYQDPVTSIDIEKQ----TLITNS---G--KLLKYGSLIVATG--CTASRFPEKIGGY-LPG-VHYIR  118 (414)
Q Consensus        54 ~~~~~~~i~--~~~~~~V~~id~~~~----~V~~~~---g--~~~~yd~LviAtG--~~~~~~~~~~g~~-~~g-v~~~~  118 (414)
                      +++++.+++  ++++++|+.++....    .|++.+   |  .++.||+||+|||  +.|+ .|.++|.+ .++ +.+..
T Consensus       109 ~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAtG~~s~p~-~p~ipG~~~~~g~~~hs~  187 (464)
T 2xve_A          109 GRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCTGHFSTPY-VPEFEGFEKFGGRILHAH  187 (464)
T ss_dssp             HHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECCCSSSSBC-CCCCBTTTTCCSEEEEGG
T ss_pred             HHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEECCCCCCCCc-cCCCCCcccCCceEEehh
Confidence            344567888  888999999987654    777754   4  5789999999999  7775 45566644 244 33322


Q ss_pred             CHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceE
Q 014997          119 DVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI  198 (414)
Q Consensus       119 ~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v  198 (414)
                      ++.+.     ....+++|+|||+|.+|+|+|..|++.|.+|+++++.+.+++..+             ..||+++  ..|
T Consensus       188 ~~~~~-----~~~~~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~~~~~~-------------~~~V~~~--~~V  247 (464)
T 2xve_A          188 DFRDA-----LEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPMGYKW-------------PENWDER--PNL  247 (464)
T ss_dssp             GCCCG-----GGGTTSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCCCCCCC-------------CTTEEEC--SCE
T ss_pred             hhCCH-----hHcCCCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCCCCCCC-------------CCceEEc--CCe
Confidence            11111     123689999999999999999999999999999999888765432             2478887  678


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhh-cCCcccCC-CEEEcC---CCCCCCCcEEEEccccccC
Q 014997          199 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER-VGLNSSVG-GIQVDG---QFRTRMPGIFAIGDVAAFP  273 (414)
Q Consensus       199 ~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~-~gl~~~~g-~i~vd~---~~~t~~~~IyA~GD~a~~~  273 (414)
                      ++++.+      .|.+.||+++++|.||+|+|++|+.+++.. .++..+++ ++ ++.   .++|+.|+|||+|||+...
T Consensus       248 ~~i~~~------~V~~~dG~~i~~D~Vi~atG~~p~~~~l~~~~gl~~~~~~~v-~~~~~~~~~t~~p~i~aiGd~~~~~  320 (464)
T 2xve_A          248 VRVDTE------NAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRLVTNNRLWP-LNLYKGVVWEDNPKFFYIGMQDQWY  320 (464)
T ss_dssp             EEECSS------EEEETTSCEEECSEEEECCCBCCCCTTBCTTTCCCCCSSSCC-SSEETTTEESSSTTEEECSCSCCSS
T ss_pred             EEEeCC------EEEECCCCEEeCCEEEECCCCCCCCCCcCcccccccCCCccc-ccccceEecCCCCCEEEEeCccccc
Confidence            888532      578899999999999999999999998875 67776644 44 443   3568999999999987631


Q ss_pred             CccCCcccccccHHHHHHHHHHHHHHHhcCC
Q 014997          274 LKMYDRTARVEHVDHARQSAQHCIKALLSAQ  304 (414)
Q Consensus       274 ~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~~  304 (414)
                                 .+..|..||+.+|+++.+..
T Consensus       321 -----------~~~~a~~qa~~~a~~l~G~~  340 (464)
T 2xve_A          321 -----------SFNMFDAQAWYARDVIMGRL  340 (464)
T ss_dssp             -----------CHHHHHHHHHHHHHHHTTSS
T ss_pred             -----------chHHHHHHHHHHHHHHcCCC
Confidence                       46679999999999999754

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=99.92  E-value=4.7e-26  Score=227.54  Aligned_cols=228  Identities=17%  Similarity=0.181  Sum_probs=160.4

Q ss_pred             CHhHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCC-CCCCCCCCCCCCCCEEEecCHHHHH----HH
Q 014997           52 TPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADAD----AL  126 (414)
Q Consensus        52 ~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~-~~~~~~~~g~~~~gv~~~~~~~~~~----~~  126 (414)
                      ..+++++.+|+++.+.++      .+.|+++++ .+.||+||||||+. ++ .+.++|.+.+++++.+++....    ++
T Consensus        67 ~~~~~~~~~v~~~~~v~v------~~~v~~~~~-~~~~d~lViAtG~~~~~-~~~ipG~~~~gv~~~~~~~~~~~~~~d~  138 (456)
T 1lqt_A           67 FEKTAEDPRFRFFGNVVV------GEHVQPGEL-SERYDAVIYAVGAQSDR-MLNIPGEDLPGSIAAVDFVGWYNAHPHF  138 (456)
T ss_dssp             HHHHHTSTTEEEEESCCB------TTTBCHHHH-HHHSSEEEECCCCCEEC-CCCCTTTTSTTEEEHHHHHHHHTTCGGG
T ss_pred             HHHHHhcCCCEEEeeEEE------CCEEEECCC-eEeCCEEEEeeCCCCCC-CCCCCCCCCCCcEEHHHHHhhhhcCccc
Confidence            345667789999987543      244666665 48999999999997 44 4456787778888755432110    00


Q ss_pred             HHhh--cCCCeEEEECCChHHHHHHHHHHhC--------------------C-CcEEEEeeCCcccccccC---------
Q 014997          127 ISSL--EKAKKVVVVGGGYIGMEVAAAAVGW--------------------K-LDTTIIFPENHLLQRLFT---------  174 (414)
Q Consensus       127 ~~~~--~~~~~vvVvGgG~~g~e~A~~l~~~--------------------g-~~Vtlv~~~~~~l~~~~~---------  174 (414)
                      ...+  ..+++|+|||+|++|+|+|..|++.                    | .+|+++.|.+.+...+..         
T Consensus       139 ~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~~f~~~elrel~~l  218 (456)
T 1lqt_A          139 EQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADL  218 (456)
T ss_dssp             TTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCCHHHHHHGGGC
T ss_pred             ccchhhcCCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChhhhccChHHHHHhhcC
Confidence            0011  1578999999999999999999874                    5 489999998866432111         


Q ss_pred             ---------HHH------------------HHHHHHHHHh------CCcEEEcCceEEEEEecCCCcEEEEEeC------
Q 014997          175 ---------PSL------------------AQRYEQLYQQ------NGVKFVKGASIKNLEAGSDGRVAAVKLE------  215 (414)
Q Consensus       175 ---------~~~------------------~~~~~~~l~~------~gv~i~~~~~v~~i~~~~~~~~~~v~~~------  215 (414)
                               +++                  .+.+.+.+++      +||++++++.+.++..+  +.+..+.+.      
T Consensus       219 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~gv~i~~~~~~~~i~~~--~~v~~v~~~~~~~~~  296 (456)
T 1lqt_A          219 DGVDVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTSPIEIKGK--RKVERIVLGRNELVS  296 (456)
T ss_dssp             TTEEEECCGGGGTTCCHHHHHHHCHHHHHHHHHHHHHHTCC-CTTSEEEEEECSEEEEEEECS--SSCCEEEEEEEEEEE
T ss_pred             CCceeeeChHHhccchhhhhhhccHHHHHHHHHHHHHhhcCCCCCCceEEEEeCCCCeEEecC--CcEeEEEEEEEEecC
Confidence                     111                  2344444555      79999999999999753  333334443      


Q ss_pred             ----------CC--cEEecCEEEEccCCcCCChhhhhcCCccc-CCCEEEcCCCC-CCCCcEEEEccccccCCccCCccc
Q 014997          216 ----------DG--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFR-TRMPGIFAIGDVAAFPLKMYDRTA  281 (414)
Q Consensus       216 ----------~g--~~i~~D~vi~a~G~~p~~~~l~~~gl~~~-~g~i~vd~~~~-t~~~~IyA~GD~a~~~~~~~~~~~  281 (414)
                                +|  ++++||+||+++|++|+. +   .+++.+ +++|.+|+++| |+.|+|||+|||+..+..      
T Consensus       297 ~~~~~~~~~~~g~~~~i~~d~vi~a~G~~p~~-l---~gl~~d~~g~i~vn~~~rvt~~pgvya~GD~~~gp~~------  366 (456)
T 1lqt_A          297 DGSGRVAAKDTGEREELPAQLVVRSVGYRGVP-T---PGLPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGPTG------  366 (456)
T ss_dssp             CSSSSEEEEEEEEEEEEECSEEEECSCEECCC-C---TTSCCBTTTTBCCEETTEETTCSSEEECTHHHHCSCS------
T ss_pred             CCcccccccCCCceEEEEcCEEEEccccccCC-C---CCCcccCCCCeeECCCCcCCCCCCEEEEeccCCCCch------
Confidence                      34  469999999999999986 3   355554 57899999999 899999999999975432      


Q ss_pred             ccccHHHHHHHHHHHHHHHhc
Q 014997          282 RVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       282 ~~~~~~~A~~~a~~aa~~i~~  302 (414)
                         .+..|+.+|..+|.+|++
T Consensus       367 ---~i~~a~~~g~~~a~~i~~  384 (456)
T 1lqt_A          367 ---VIGTNKKDAQDTVDTLIK  384 (456)
T ss_dssp             ---CTTHHHHHHHHHHHHHHH
T ss_pred             ---hHHHHHHHHHHHHHHHHH
Confidence               123477888888888874

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=99.91  E-value=8.4e-25  Score=230.60  Aligned_cols=223  Identities=16%  Similarity=0.175  Sum_probs=164.7

Q ss_pred             CEEEeCCCcEEecCeEEEccCCCCC-------CCCCCCCCC--CCCEEEecCHHHHHHHHHhhcCCCeEEEEC--CChHH
Q 014997           77 QTLITNSGKLLKYGSLIVATGCTAS-------RFPEKIGGY--LPGVHYIRDVADADALISSLEKAKKVVVVG--GGYIG  145 (414)
Q Consensus        77 ~~V~~~~g~~~~yd~LviAtG~~~~-------~~~~~~g~~--~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG--gG~~g  145 (414)
                      +.|+++++..+.||+||||||+.++       ..+.++|.+  .+++++.   .+.  +......+++|+|||  ||.+|
T Consensus       468 ~~v~~~~~~~~~~d~vviAtG~~~~~~~~~~p~~~~ipG~~~~~~~v~~~---~~~--l~~~~~~gk~VvVIG~GgG~~g  542 (729)
T 1o94_A          468 KPMTADDVLQYGADKVIIATGARWNTDGTNCLTHDPIPGADASLPDQLTP---EQV--MDGKKKIGKRVVILNADTYFMA  542 (729)
T ss_dssp             CCCCHHHHHTSCCSEEEECCCEEECSSCCCTTTSSCCTTCCTTSTTEECH---HHH--HHCCSCCCSEEEEEECCCSSHH
T ss_pred             eEEehhhccccCCCEEEEcCCCCcccccccCccCCCCCCccccCCCEEEH---HHH--hcCCCCCCCeEEEEcCCCCchH
Confidence            4455666667899999999999842       234456655  4566543   222  222344678999998  99999


Q ss_pred             HHHHHHHHhCCCcEEEEeeCCccccc-ccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCC-cE----
Q 014997          146 MEVAAAAVGWKLDTTIIFPENHLLQR-LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-ST----  219 (414)
Q Consensus       146 ~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g-~~----  219 (414)
                      +|+|..|+++|.+||++++.+ +++. .++.. ...+.+.+++.||++++++.++++..+  +......+.++ +.    
T Consensus       543 ~e~A~~l~~~G~~Vtlv~~~~-l~~~~~~~~~-~~~~~~~l~~~GV~i~~~~~v~~i~~~--~v~~~~~~~~~~~~~~~~  618 (729)
T 1o94_A          543 PSLAEKLATAGHEVTIVSGVH-LANYMHFTLE-YPNMMRRLHELHVEELGDHFCSRIEPG--RMEIYNIWGDGSKRTYRG  618 (729)
T ss_dssp             HHHHHHHHHTTCEEEEEESSC-TTHHHHHTTC-HHHHHHHHHHTTCEEECSEEEEEEETT--EEEEEETTCSCSCCCCCC
T ss_pred             HHHHHHHHHcCCEEEEEeccc-cccccccccc-HHHHHHHHHhCCCEEEcCcEEEEEECC--eEEEEEecCCceEEeccc
Confidence            999999999999999999988 6553 23333 456778889999999999999999742  21111112333 33    


Q ss_pred             --------------EecCEEEEccCCcCCChhhhhcCCcccCCCEEEcCCCCCCCCcEEEEccccccCCccCCccccccc
Q 014997          220 --------------IDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEH  285 (414)
Q Consensus       220 --------------i~~D~vi~a~G~~p~~~~l~~~gl~~~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~  285 (414)
                                    ++||.||+++|.+|+++++++++.       .+|++++|+.|+|||+|||+...           .
T Consensus       619 ~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~~l~~~l~~-------~vd~~~~t~~~~VyAiGD~~~~~-----------~  680 (729)
T 1o94_A          619 PGVSPRDANTSHRWIEFDSLVLVTGRHSECTLWNELKA-------RESEWAENDIKGIYLIGDAEAPR-----------L  680 (729)
T ss_dssp             TTSCSSCCCCCCEEEECSEEEEESCEEECCHHHHHHHH-------TGGGTGGGTCCEEEECGGGTSCC-----------C
T ss_pred             ccccccccCCcceeeeCCEEEECCCCCCChHHHHHHhh-------hcccccccCCCCeEEEeCccchh-----------h
Confidence                          999999999999999988765421       26789999999999999998621           4


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCCCCceeeeccCCCCCCcceeeeEeecC
Q 014997          286 VDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDN  336 (414)
Q Consensus       286 ~~~A~~~a~~aa~~i~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~  336 (414)
                      +..|..+|+.+|.+|.+.  ..+..+|| |++++++.       +|++|..
T Consensus       681 ~~~A~~~G~~aA~~i~~~--l~~~~~p~-~~~~~~~~-------~~~~~~~  721 (729)
T 1o94_A          681 IADATFTGHRVAREIEEA--NPQIAIPY-KRETIAWG-------TPHMPGG  721 (729)
T ss_dssp             HHHHHHHHHHHHHTTTSS--CTTSCCCC-CCCCCCTT-------CCSSTTC
T ss_pred             HHHHHHHHHHHHHHhhhh--cccCCCCe-eeecccCc-------ccccCCC
Confidence            667999999999999853  35677898 88888764       5666643

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.91  E-value=1.4e-24  Score=219.24  Aligned_cols=234  Identities=14%  Similarity=0.132  Sum_probs=173.0

Q ss_pred             CcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCCCEEEe--
Q 014997            4 GRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLIT--   81 (414)
Q Consensus         4 g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~--   81 (414)
                      .+|+||++++++.+.+...+..+. +          ++. .+.++..+..+.+ +.+++++++++|.+++.+++.+.+  
T Consensus       131 ~~V~vie~~~~~GG~~~~~~~~~~-g----------~~~-~~~~~~~~l~~~l-~~~v~~~~~~~v~~i~~~~~~~~~~~  197 (493)
T 1y56_A          131 LTVALIEERGWLGGDMWLKGIKQE-G----------FNK-DSRKVVEELVGKL-NENTKIYLETSALGVFDKGEYFLVPV  197 (493)
T ss_dssp             CCEEEECTTSSSSCSGGGTCSEET-T----------TTE-EHHHHHHHHHHTC-CTTEEEETTEEECCCEECSSSEEEEE
T ss_pred             CCEEEEeCCCCCCCeeeccccccC-C----------CCC-CHHHHHHHHHHHH-hcCCEEEcCCEEEEEEcCCcEEEEEE
Confidence            579999999888777554443221 1          000 0000000111111 458999999999999887764322  


Q ss_pred             -CCCc--EEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHh--hcCCCeEEEECCChHHHHHHHHHHhCC
Q 014997           82 -NSGK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS--LEKAKKVVVVGGGYIGMEVAAAAVGWK  156 (414)
Q Consensus        82 -~~g~--~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~--~~~~~~vvVvGgG~~g~e~A~~l~~~g  156 (414)
                       ++++  .+.||+||||||+.++. +.++|.+.+++++..   +...+...  ..++++++|+|+|++|+|         
T Consensus       198 ~~~~~~~~~~~d~lvlAtGa~~~~-~~~~g~~~~gv~~~~---~~~~~~~~~~~~~~~~vvViGgG~~gle---------  264 (493)
T 1y56_A          198 VRGDKLIEILAKRVVLATGAIDST-MLFENNDMPGVFRRD---FALEVMNVWEVAPGRKVAVTGSKADEVI---------  264 (493)
T ss_dssp             EETTEEEEEEESCEEECCCEEECC-CCCTTTTSTTEEEHH---HHHHHHHTSCBCSCSEEEEESTTHHHHH---------
T ss_pred             ecCCeEEEEECCEEEECCCCCccC-CCCCCCCCCCEEEcH---HHHHHHHhcccCCCCEEEEECCCHHHHH---------
Confidence             4554  68999999999999864 556788888988753   34444433  235799999999999998         


Q ss_pred             CcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCCh
Q 014997          157 LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       157 ~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  236 (414)
                                                +.+++.||++++++.|+++..+  +.+..+.+.+|+++++|.||+++|.+|+.+
T Consensus       265 --------------------------~~l~~~GV~v~~~~~v~~i~~~--~~v~~v~~~~g~~i~aD~Vv~a~G~~p~~~  316 (493)
T 1y56_A          265 --------------------------QELERWGIDYVHIPNVKRVEGN--EKVERVIDMNNHEYKVDALIFADGRRPDIN  316 (493)
T ss_dssp             --------------------------HHHHHHTCEEEECSSEEEEECS--SSCCEEEETTCCEEECSEEEECCCEEECCH
T ss_pred             --------------------------HHHHhCCcEEEeCCeeEEEecC--CceEEEEeCCCeEEEeCEEEECCCcCcCch
Confidence                                      4467789999999999999853  334567788999999999999999999999


Q ss_pred             hhhhcCCcc---cCCCEE-EcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 014997          237 PFERVGLNS---SVGGIQ-VDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA  303 (414)
Q Consensus       237 ~l~~~gl~~---~~g~i~-vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~  303 (414)
                      +++.+|+..   .+|+|. ||++++ +.|+|||+|||+..+           .+..|..+|+.+|.+|.+.
T Consensus       317 l~~~~g~~~~~~~~g~i~~vd~~~~-s~~~vya~GD~~~~~-----------~~~~A~~~g~~aa~~i~~~  375 (493)
T 1y56_A          317 PITQAGGKLRFRRGYYSPVLDEYHR-IKDGIYVAGSAVSIK-----------PHYANYLEGKLVGAYILKE  375 (493)
T ss_dssp             HHHHTTCCEEEETTEEEECCCTTSE-EETTEEECSTTTCCC-----------CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCccccCCceeeccccccC-cCCCEEEEeccCCcc-----------CHHHHHHHHHHHHHHHHHH
Confidence            999998865   256677 899999 999999999999742           4667999999999999863

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=99.90  E-value=1.1e-23  Score=211.19  Aligned_cols=234  Identities=15%  Similarity=0.129  Sum_probs=154.8

Q ss_pred             HHcCCeEEcCCcEEEEeCC---CC----EEEeCCCc----EEecCeEEEccCCCCCCCCC-CCCCCCC-CEEEecCHHH-
Q 014997           57 KEKGIEMIYQDPVTSIDIE---KQ----TLITNSGK----LLKYGSLIVATGCTASRFPE-KIGGYLP-GVHYIRDVAD-  122 (414)
Q Consensus        57 ~~~~i~~~~~~~V~~id~~---~~----~V~~~~g~----~~~yd~LviAtG~~~~~~~~-~~g~~~~-gv~~~~~~~~-  122 (414)
                      ++.+++++++++|++|+++   ++    .|.+.+|+    ++.||+||+|||+.|. .|. ..+.... .+.+.....+ 
T Consensus       138 ~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAtG~~p~-~p~~~~~~~~~~~~~~~~~~~~~  216 (463)
T 3s5w_A          138 SHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPGGTPR-IPQVFRALKGDGRVFHHSQYLEH  216 (463)
T ss_dssp             TTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEECCCCEEC-CCGGGGGGTTCTTEEEGGGHHHH
T ss_pred             HHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEECCCCCCC-CcchhhhcCCCCcEEECHHHHhh
Confidence            3458999999999999876   44    67777775    8999999999999876 343 2221121 3444332222 


Q ss_pred             HHHHHHhhcCCCeEEEECCChHHHHHHHHHHhC--CCcEEEEeeCCcccccc-------------------cCHHHHHHH
Q 014997          123 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQRL-------------------FTPSLAQRY  181 (414)
Q Consensus       123 ~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~l~~~-------------------~~~~~~~~~  181 (414)
                      ...+.....++++|+|||+|.+|+|+|..|++.  +.+|++++|.+.+++..                   ++++....+
T Consensus       217 ~~~~~~~~~~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~p~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  296 (463)
T 3s5w_A          217 MAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALKPADDSPFVNEVFAPKFTDLIYSREHAERERL  296 (463)
T ss_dssp             HCC-------CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCCBCCCCHHHHGGGSHHHHHHHHHSCHHHHHHH
T ss_pred             HHHhhhcccCCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCcCccCCccchhccChhHHHHHhcCCHHHHHHH
Confidence            222211122589999999999999999999998  89999999998765421                   122222222


Q ss_pred             HHHHHh--------------------------CCcEEEcCceEEEEEecCCCcEEEEEeC---CCc--EEecCEEEEccC
Q 014997          182 EQLYQQ--------------------------NGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIG  230 (414)
Q Consensus       182 ~~~l~~--------------------------~gv~i~~~~~v~~i~~~~~~~~~~v~~~---~g~--~i~~D~vi~a~G  230 (414)
                      .+.+..                          .||++++++.|++++.++++  ..+.+.   +|+  ++++|.||+|+|
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~~~~--~~v~~~~~~~g~~~~~~~D~Vv~AtG  374 (463)
T 3s5w_A          297 LREYHNTNYSVVDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATATAQG--IELALRDAGSGELSVETYDAVILATG  374 (463)
T ss_dssp             HHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCCCCSEEETTEEEEEEEEETTE--EEEEEEETTTCCEEEEEESEEEECCC
T ss_pred             HHHhhccCCCcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCCEEEEEEecCCE--EEEEEEEcCCCCeEEEECCEEEEeeC
Confidence            222222                          69999999999999865333  245554   665  499999999999


Q ss_pred             CcCC--ChhhhhcCCcccCCCEEEcCCCCCC-----CCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHH
Q 014997          231 AKPT--VSPFERVGLNSSVGGIQVDGQFRTR-----MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL  300 (414)
Q Consensus       231 ~~p~--~~~l~~~gl~~~~g~i~vd~~~~t~-----~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i  300 (414)
                      ++|+  .+++.......  |++.||+++++.     .|+|||+|||..........     .-..|.+++.+++..+
T Consensus       375 ~~p~~~~~~l~~l~~~~--g~i~v~~~~~~~~~~~~~~~Ifa~G~~~~~~g~~~~~-----l~~~a~r~~~i~~~~~  444 (463)
T 3s5w_A          375 YERQLHRQLLEPLAEYL--GDHEIGRDYRLQTDERCKVAIYAQGFSQASHGLSDTL-----LSVLPVRAEEISGSLY  444 (463)
T ss_dssp             EECCC-CTTTGGGGGGB--C--CCCTTSBCCBCTTBCSEEEESSCCHHHHCTTTTS-----STTHHHHHHHHHHHHH
T ss_pred             CCCCCccchhHHHHHHh--CCcccCcccccccCCCCCCeEEEcCCCcccCCcCccc-----hhHHHHHHHHHHHHHH
Confidence            9999  66776654333  789999999873     46799999998743321111     2223667777665444

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.90  E-value=4.6e-23  Score=179.96  Aligned_cols=153  Identities=22%  Similarity=0.229  Sum_probs=130.6

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc--------cc-----CHHHHHHHHHHHHhCCcEEEcCceEEEE
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LF-----TPSLAQRYEQLYQQNGVKFVKGASIKNL  201 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~--------~~-----~~~~~~~~~~~l~~~gv~i~~~~~v~~i  201 (414)
                      +++|||||++|+++|..|+++|.+|+++++.+.++.+        .+     ++++.+.+.+.+++.|++++.+ +|+++
T Consensus         3 ~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i   81 (180)
T 2ywl_A            3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVRPG-VVKGV   81 (180)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEEEEC-CCCEE
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEEEeC-EEEEE
Confidence            6899999999999999999999999999998766532        12     4678888999999999999999 99999


Q ss_pred             EecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhcCCcccCCCEEEcCCCCCCCCcEEEEccccccCCccCCccc
Q 014997          202 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA  281 (414)
Q Consensus       202 ~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~  281 (414)
                      +.++++  ..+.+++| ++++|.||+|+|..|+  +++..|++.++|.|.||++++|+.|+|||+|||+..+.+      
T Consensus        82 ~~~~~~--~~v~~~~g-~i~ad~vI~A~G~~~~--~~~~~g~~~~~g~i~vd~~~~t~~~~i~a~GD~~~~~~~------  150 (180)
T 2ywl_A           82 RDMGGV--FEVETEEG-VEKAERLLLCTHKDPT--LPSLLGLTRRGAYIDTDEGGRTSYPRVYAAGVARGKVPG------  150 (180)
T ss_dssp             EECSSS--EEEECSSC-EEEEEEEEECCTTCCH--HHHHHTCCEETTEECCCTTCBCSSTTEEECGGGGTCCSC------
T ss_pred             EEcCCE--EEEEECCC-EEEECEEEECCCCCCC--ccccCCCCccCceEEeCCCCCcCCCCEEEeecccCcchh------
Confidence            865443  36778888 8999999999999984  567778887766788999999999999999999986532      


Q ss_pred             ccccHHHHHHHHHHHHHHHhc
Q 014997          282 RVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       282 ~~~~~~~A~~~a~~aa~~i~~  302 (414)
                         ++..|..+|+.+|.||.+
T Consensus       151 ---~~~~A~~~g~~aa~~i~~  168 (180)
T 2ywl_A          151 ---HAIISAGDGAYVAVHLVS  168 (180)
T ss_dssp             ---CHHHHHHHHHHHHHHHHH
T ss_pred             ---hHHHHHHhHHHHHHHHHH
Confidence               567799999999999986

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=99.88  E-value=7.2e-23  Score=214.34  Aligned_cols=200  Identities=19%  Similarity=0.214  Sum_probs=151.1

Q ss_pred             HhHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEE-ecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhc
Q 014997           53 PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLL-KYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE  131 (414)
Q Consensus        53 ~~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~-~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~  131 (414)
                      .+++++.+|++++++.|+.             ..+ .||+||||||++|+. |.++|.+.+++++..     +.+.....
T Consensus       432 ~~~~~~~gv~~~~~~~v~~-------------~~~~~~d~lviAtG~~p~~-~~i~G~~~~~v~~~~-----~~l~~~~~  492 (671)
T 1ps9_A          432 RRMIEVTGVTLKLNHTVTA-------------DQLQAFDETILASGIVPRT-PPIDGIDHPKVLSYL-----DVLRDKAP  492 (671)
T ss_dssp             HHHHHHHTCEEEESCCCCS-------------SSSCCSSEEEECCCEEECC-CCCBTTTSTTEEEHH-----HHHTSCCC
T ss_pred             HHHHHHcCCEEEeCcEecH-------------HHhhcCCEEEEccCCCcCC-CCCCCCCCCcEeeHH-----HHhhCCCC
Confidence            4556778999999876531             124 899999999999874 556776666776542     22222234


Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCC-------------------------------------cEEEEeeCCcccccccC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKL-------------------------------------DTTIIFPENHLLQRLFT  174 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~-------------------------------------~Vtlv~~~~~~l~~~~~  174 (414)
                      .+++|+|||||++|+|+|..|++.|.                                     +|+++++.+..+...++
T Consensus       493 ~~~~VvVIGgG~~g~E~A~~l~~~G~~vtv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~l~~~l~  572 (671)
T 1ps9_A          493 VGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLG  572 (671)
T ss_dssp             CCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTSC
T ss_pred             CCCeEEEECCChhHHHHHHHHHhcCCCcccchhhhhhhhcccccccccccccccccccCCCCcEEEEEEecchhhccccc
Confidence            68999999999999999999998773                                     45677776666665677


Q ss_pred             HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCC--cEEecCEEEEccCCcCCChhhhhcCCcccCCCEEE
Q 014997          175 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQV  252 (414)
Q Consensus       175 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~g~i~v  252 (414)
                      +.....+.+.+++.||++++++.+++++.  ++ + .+. .+|  +++++|.||+++|++|++++++.+.          
T Consensus       573 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~--~~-v-~~~-~~G~~~~i~~D~Vi~a~G~~p~~~l~~~l~----------  637 (671)
T 1ps9_A          573 KTTGWIHRTTLLSRGVKMIPGVSYQKIDD--DG-L-HVV-INGETQVLAVDNVVICAGQEPNRALAQPLI----------  637 (671)
T ss_dssp             TTTHHHHHHHHHHTTCEEECSCEEEEEET--TE-E-EEE-ETTEEEEECCSEEEECCCEEECCTTHHHHH----------
T ss_pred             cccHHHHHHHHHhcCCEEEeCcEEEEEeC--Ce-E-EEe-cCCeEEEEeCCEEEECCCccccHHHHHHHH----------
Confidence            77778888999999999999999999973  22 1 222 566  5799999999999999988876431          


Q ss_pred             cCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHH
Q 014997          253 DGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL  300 (414)
Q Consensus       253 d~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i  300 (414)
                           ...++||++|||+.....         .+..|.+||..+|.||
T Consensus       638 -----~~g~~v~aiGD~~~~~~~---------~~~~A~~~g~~aA~~i  671 (671)
T 1ps9_A          638 -----DSGKTVHLIGGCDVAMEL---------DARRAIAQGTRLALEI  671 (671)
T ss_dssp             -----TTTCCEEECGGGTCCSSC---------CHHHHHHHHHHHHHHC
T ss_pred             -----hcCCCEEEECCcCccCch---------hHHHHHHHHHHHHHhC
Confidence                 123789999999885431         4678999999999885

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=99.88  E-value=6.2e-23  Score=215.39  Aligned_cols=214  Identities=19%  Similarity=0.152  Sum_probs=158.9

Q ss_pred             HhHHHHc-CCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCC-------CCCCCCCCCCCEEEecCHHHHH
Q 014997           53 PEWYKEK-GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASR-------FPEKIGGYLPGVHYIRDVADAD  124 (414)
Q Consensus        53 ~~~~~~~-~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~-------~~~~~g~~~~gv~~~~~~~~~~  124 (414)
                      ..++.+. +++++++++|+          .++++++.||+||||||+.++.       .|.++|.+.+++++   ..+. 
T Consensus       450 ~~~~~~~~gv~~~~~~~v~----------~~~~~~~~~d~lvlAtG~~~~~~~~~~~~~~~i~G~~~~~v~~---~~~~-  515 (690)
T 3k30_A          450 EAVLAELPNVEIYRESPMT----------GDDIVEFGFEHVITATGATWRTDGVARFHTTALPIAEGMQVLG---PDDL-  515 (690)
T ss_dssp             HHHHHTCTTEEEESSCCCC----------HHHHHHTTCCEEEECCCEEECSSCCSSSCSSCCCBCTTSEEEC---HHHH-
T ss_pred             HHHHHHcCCCEEEECCeec----------HHHHhhcCCCEEEEcCCCccccccccccCCCCCCCCCCCcEEc---HHHH-
Confidence            3445565 89998876542          2345568999999999998531       34455655444443   2222 


Q ss_pred             HHHHhhcCCCeEEEEC--CChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEE
Q 014997          125 ALISSLEKAKKVVVVG--GGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE  202 (414)
Q Consensus       125 ~~~~~~~~~~~vvVvG--gG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~  202 (414)
                       +......+++|+|||  +|.+|+|+|..|++.|.+|+++++.+.+++...++.....+.+.+++.||+++++++|++++
T Consensus       516 -l~~~~~~g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~  594 (690)
T 3k30_A          516 -FAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVG  594 (690)
T ss_dssp             -HTTCCCSSSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGGGGGTCHHHHHHHHHHTTCEEEESEEEEEEE
T ss_pred             -hCCCCCCCCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccccccccccchhHHHHHHHHHHCCCEEEcCcEEEEEE
Confidence             222345678999999  99999999999999999999999999887754456667788899999999999999999997


Q ss_pred             ecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhcCCcccCCCEEEcCCCCCCCCcEEEEccccccCCccCCcccc
Q 014997          203 AGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTAR  282 (414)
Q Consensus       203 ~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~  282 (414)
                      .+ +..+..+...++++++||.||+|+|++|+..+++.++...   .       +|+.|+|||+|||+..+         
T Consensus       595 ~~-~~~v~~~~~~~~~~i~aD~VV~A~G~~p~~~l~~~l~~~~---~-------~t~~~~VyaiGD~~~~~---------  654 (690)
T 3k30_A          595 AG-GVTVRDTYASIERELECDAVVMVTARLPREELYLDLVARR---D-------AGEIASVRGIGDAWAPG---------  654 (690)
T ss_dssp             TT-EEEEEETTTCCEEEEECSEEEEESCEEECCHHHHHHHHHH---H-------HTSCSEEEECGGGTSCB---------
T ss_pred             CC-eEEEEEccCCeEEEEECCEEEECCCCCCChHHHHHHhhhh---c-------ccCCCCEEEEeCCCchh---------
Confidence            43 1111111123556899999999999999998876643221   1       78999999999999742         


Q ss_pred             cccHHHHHHHHHHHHHHHhcC
Q 014997          283 VEHVDHARQSAQHCIKALLSA  303 (414)
Q Consensus       283 ~~~~~~A~~~a~~aa~~i~~~  303 (414)
                        .+..|..+|+.+|.+|.+.
T Consensus       655 --~~~~A~~~g~~aa~~i~~~  673 (690)
T 3k30_A          655 --TIAAAVWSGRRAAEEFDAV  673 (690)
T ss_dssp             --CHHHHHHHHHHHHHHTTCC
T ss_pred             --hHHHHHHHHHHHHHHHHhh
Confidence              4556999999999999864

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.87  E-value=3.7e-22  Score=199.29  Aligned_cols=209  Identities=13%  Similarity=0.092  Sum_probs=153.5

Q ss_pred             HHHcCCeEEcCCcEEEEeCCCC--EEEeCC---Cc---EEecCeEEEccCC--CCCCCCCCCCCC-----CCC-EEEecC
Q 014997           56 YKEKGIEMIYQDPVTSIDIEKQ--TLITNS---GK---LLKYGSLIVATGC--TASRFPEKIGGY-----LPG-VHYIRD  119 (414)
Q Consensus        56 ~~~~~i~~~~~~~V~~id~~~~--~V~~~~---g~---~~~yd~LviAtG~--~~~~~~~~~g~~-----~~g-v~~~~~  119 (414)
                      +++.++.++++++|+.++....  .|++.+   |+   ++.||+||+|||+  .|+ .|.++|.+     .++ +.+..+
T Consensus       125 ~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~~~~~~~d~VVvAtG~~s~p~-~p~i~G~~~~~~~~~g~v~~~~~  203 (447)
T 2gv8_A          125 AQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPY-IPNIKGLDEYAKAVPGSVLHSSL  203 (447)
T ss_dssp             HGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEEEEESEEEECCCSSSSBC-BCCCBTHHHHHHHSTTSEEEGGG
T ss_pred             HHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCCCCeeEEEEeCEEEECCCCCCCCC-CCCCCChhhhhccCCccEEEecc
Confidence            3445778889999999987654  676665   66   7999999999998  554 44445532     122 444332


Q ss_pred             HHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCc-EEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceE
Q 014997          120 VADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI  198 (414)
Q Consensus       120 ~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~-Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v  198 (414)
                      +.+..     ...+++|+|||+|++|+|+|..|++.+.+ |+++++.+.+                +++.||.+  +..|
T Consensus       204 ~~~~~-----~~~~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~~~----------------l~~~~i~~--~~~v  260 (447)
T 2gv8_A          204 FREPE-----LFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGD----------------IQNESLQQ--VPEI  260 (447)
T ss_dssp             CCCGG-----GGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCS----------------CBCSSEEE--ECCE
T ss_pred             cCChh-----hcCCCEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCCCc----------------CCCCCeEE--ecCe
Confidence            22211     12689999999999999999999999999 9999998755                34567775  4678


Q ss_pred             EEEEecCCCcEEEEEeCCCcE-EecCEEEEccCCcCCChh-----hhhc--CCcccCCCEEEcCCCC---CCCCcEEEEc
Q 014997          199 KNLEAGSDGRVAAVKLEDGST-IDADTIVIGIGAKPTVSP-----FERV--GLNSSVGGIQVDGQFR---TRMPGIFAIG  267 (414)
Q Consensus       199 ~~i~~~~~~~~~~v~~~~g~~-i~~D~vi~a~G~~p~~~~-----l~~~--gl~~~~g~i~vd~~~~---t~~~~IyA~G  267 (414)
                      +++..+ ++   .|.+.||+. +++|.||+|+|++|++++     +++.  ++.. ++.+.++.+.+   ++.|+||++|
T Consensus       261 ~~~~~~-~~---~v~~~dG~~~~~~D~vi~atG~~~~~~~l~~~~l~~~~~~i~~-~~~~~~~~~~~v~~~~~p~l~~~G  335 (447)
T 2gv8_A          261 TKFDPT-TR---EIYLKGGKVLSNIDRVIYCTGYLYSVPFPSLAKLKSPETKLID-DGSHVHNVYQHIFYIPDPTLAFVG  335 (447)
T ss_dssp             EEEETT-TT---EEEETTTEEECCCSEEEECCCBCCCCCCHHHHSCCSTTTCCCS-SSSSCCSEETTTEETTCTTEEESS
T ss_pred             EEEecC-CC---EEEECCCCEeccCCEEEECCCCCcCCCCCcccccccccCceec-CCCcccccccccccCCCCcEEEEe
Confidence            888632 22   678899976 799999999999999998     6554  3333 24455555555   6899999999


Q ss_pred             cccccCCccCCcccccccHHHHHHHHHHHHHHHhcCC
Q 014997          268 DVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ  304 (414)
Q Consensus       268 D~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~~  304 (414)
                      |+....           .+..|..||+.+|+++.+..
T Consensus       336 ~~~~~~-----------~~~~a~~qa~~~a~~~~g~~  361 (447)
T 2gv8_A          336 LALHVV-----------PFPTSQAQAAFLARVWSGRL  361 (447)
T ss_dssp             CCBSSC-----------HHHHHHHHHHHHHHHHTTSS
T ss_pred             cccccc-----------CchHHHHHHHHHHHHHcCCC
Confidence            997531           46679999999999999743

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.85  E-value=1.3e-20  Score=191.99  Aligned_cols=227  Identities=16%  Similarity=0.211  Sum_probs=155.0

Q ss_pred             HhHHHHcCC--eEEcCCcEEEEeCCCC----EEEeCCCcEEecCeEEEccC--CCCCCCCCCCCCC-CCCEEEecCHHHH
Q 014997           53 PEWYKEKGI--EMIYQDPVTSIDIEKQ----TLITNSGKLLKYGSLIVATG--CTASRFPEKIGGY-LPGVHYIRDVADA  123 (414)
Q Consensus        53 ~~~~~~~~i--~~~~~~~V~~id~~~~----~V~~~~g~~~~yd~LviAtG--~~~~~~~~~~g~~-~~gv~~~~~~~~~  123 (414)
                      .+.+++.++  +++++++|++++.+..    .|++++|+++.||+||+|||  +.|+ .|.++|.+ +.+..... ..  
T Consensus        94 ~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~-~p~ipG~~~f~g~~~~~-~~--  169 (540)
T 3gwf_A           94 EDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAIN-FPNLPGLDTFEGETIHT-AA--  169 (540)
T ss_dssp             HHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBC-CCCCTTGGGCCSEEEEG-GG--
T ss_pred             HHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCC-CCCCCCccccCCCEEEe-ec--
Confidence            345667888  8999999999987665    88999999999999999999  5665 45566643 33322111 11  


Q ss_pred             HHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHH------------------
Q 014997          124 DALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY------------------  185 (414)
Q Consensus       124 ~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l------------------  185 (414)
                       ........+++|+|||+|.+|+|+|..|++.+.+||+++|.+.++...+++++...+.+.+                  
T Consensus       170 -~~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~  248 (540)
T 3gwf_A          170 -WPEGKSLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNRPVNPEQIAEIKADYDRIWERAKNSAVAF  248 (540)
T ss_dssp             -CCSSCCCTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCCCEEECCCCBCCHHHHHHHHHTHHHHHHHHHTSSSCS
T ss_pred             -CCCccccccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCccCCCCHHHHHHHHhccHHHHHHHHhccccc
Confidence             0011224689999999999999999999999999999999987322222222111111111                  


Q ss_pred             --------------------------------------------------------------------------------
Q 014997          186 --------------------------------------------------------------------------------  185 (414)
Q Consensus       186 --------------------------------------------------------------------------------  185 (414)
                                                                                                      
T Consensus       249 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dp~~~~~l~P~~~g~k  328 (540)
T 3gwf_A          249 GFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFMFGTFGDIATDEAANEAAASFIRAKVAEIIEDPETARKLMPKGLFAK  328 (540)
T ss_dssp             SSCCCCCCGGGSCHHHHHHHHHHHHHHCCHHHHHHTSCSCTTTCHHHHHHHHHHHHHHHHHHCCSHHHHHHHCCCSCCCS
T ss_pred             cccccchhhhhCCHHHHHHHHHHHHhcccchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHHHhCCCCCCCcc
Confidence                                                                                            


Q ss_pred             ------------HhCCcEEEc--CceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhcCCcccCCCEE
Q 014997          186 ------------QQNGVKFVK--GASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQ  251 (414)
Q Consensus       186 ------------~~~gv~i~~--~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~g~i~  251 (414)
                                  .+.+|+++.  +..|++|+.+      .|.++||+++++|+||+|||++++..++...++... +++.
T Consensus       329 R~~~~~~y~~~l~~~nV~lv~~~~~~I~~it~~------gv~~~dG~~~~~DvIV~ATGf~~~~~~~~~~~i~g~-~G~~  401 (540)
T 3gwf_A          329 RPLCDSGYYEVYNRPNVEAVAIKENPIREVTAK------GVVTEDGVLHELDVLVFATGFDAVDGNYRRIEIRGR-DGLH  401 (540)
T ss_dssp             SCEEESSTGGGGGSTTEEEEETTTSCEEEECSS------EEEETTCCEEECSEEEECCCBSCSSHHHHTSEEECG-GGCB
T ss_pred             ccCCCccHHHHhcCCCEEEEeCCCCCccEEecC------eEEcCCCCEEECCEEEECCccCccccCcCcceEECC-CCcC
Confidence                        145788885  6789999753      688999999999999999999999766655444322 2333


Q ss_pred             EcC----------CCCC-CCCcEEEE-ccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 014997          252 VDG----------QFRT-RMPGIFAI-GDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  301 (414)
Q Consensus       252 vd~----------~~~t-~~~~IyA~-GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~  301 (414)
                      +++          .+.+ +.||+|++ |..+..     +.     ....+..|++++++.|.
T Consensus       402 l~~~w~~~~~~y~g~~v~gfPN~f~~~Gp~~~~-----~s-----~~~~~e~q~~~i~~~i~  453 (540)
T 3gwf_A          402 INDHWDGQPTSYLGVSTANFPNWFMVLGPNGPF-----TN-----LPPSIETQVEWISDTIG  453 (540)
T ss_dssp             HHHHTSSSCCCBTTTBCTTCTTEEESSCSSCBC-----SC-----HHHHHHHHHHHHHHHHH
T ss_pred             HHHhhccChhhccccccCCCCceEEEecCCCCC-----cc-----HHHHHHHHHHHHHHHHH
Confidence            332          2232 89999998 876541     11     23346677888777664

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=99.77  E-value=2e-18  Score=176.00  Aligned_cols=115  Identities=18%  Similarity=0.198  Sum_probs=81.4

Q ss_pred             HhHHHHcCC--eEEcCCcEEEEeCCCC----EEEeCCCcEEecCeEEEccC--CCCCCCCCCCCCC-CCCE--EEecCHH
Q 014997           53 PEWYKEKGI--EMIYQDPVTSIDIEKQ----TLITNSGKLLKYGSLIVATG--CTASRFPEKIGGY-LPGV--HYIRDVA  121 (414)
Q Consensus        53 ~~~~~~~~i--~~~~~~~V~~id~~~~----~V~~~~g~~~~yd~LviAtG--~~~~~~~~~~g~~-~~gv--~~~~~~~  121 (414)
                      .+.+++.++  +++++++|++++.+..    .|++++|+++.||+||+|||  +.|. .|.++|.+ +.+.  ++.+...
T Consensus        94 ~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~-~p~ipG~~~f~g~~~h~~~~~~  172 (545)
T 3uox_A           94 NRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASR-MPDIKGIDSFKGESFHSSRWPT  172 (545)
T ss_dssp             HHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC----CCCTTGGGCCSEEEEGGGCCB
T ss_pred             HHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCc-CCCCCCccccCCCeEEcccccc
Confidence            344566777  7889999999987654    88999999999999999999  6775 45566643 3332  2211111


Q ss_pred             HHHHHH-HhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc
Q 014997          122 DADALI-SSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  168 (414)
Q Consensus       122 ~~~~~~-~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  168 (414)
                      +..... .....+++|+|||+|.+|+|+|..|++.+.+||+++|.+++
T Consensus       173 ~~~~~~~~~~~~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~  220 (545)
T 3uox_A          173 DAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNW  220 (545)
T ss_dssp             CTTSCBSCCCCBTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCC
T ss_pred             cccccccccccCCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCc
Confidence            000000 01235799999999999999999999999999999999874

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.77  E-value=4.9e-18  Score=173.22  Aligned_cols=110  Identities=19%  Similarity=0.185  Sum_probs=83.9

Q ss_pred             HhHHHHcCC--eEEcCCcEEEEeCCCC----EEEeCCCcEEecCeEEEccC--CCCCCCCCCCCCC-CCCE-EEecCHH-
Q 014997           53 PEWYKEKGI--EMIYQDPVTSIDIEKQ----TLITNSGKLLKYGSLIVATG--CTASRFPEKIGGY-LPGV-HYIRDVA-  121 (414)
Q Consensus        53 ~~~~~~~~i--~~~~~~~V~~id~~~~----~V~~~~g~~~~yd~LviAtG--~~~~~~~~~~g~~-~~gv-~~~~~~~-  121 (414)
                      .+.+++.++  +++++++|++++.+..    .|++++|+++.||+||+|||  +.|. .|.++|.+ +.+. ++..... 
T Consensus       106 ~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~-~p~ipG~~~f~g~~~~~~~~~~  184 (549)
T 4ap3_A          106 EHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNAN-TPAFDGLDRFTGDIVHTARWPH  184 (549)
T ss_dssp             HHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECC-CCCCTTGGGCCSEEEEGGGCCT
T ss_pred             HHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCC-CCCCCCcccCCCceEEeccccc
Confidence            344567788  7999999999987665    88999999999999999999  6775 45566643 3342 2211100 


Q ss_pred             HHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc
Q 014997          122 DADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  168 (414)
Q Consensus       122 ~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  168 (414)
                      +.     ....+++|+|||+|.+|+|+|..|++.+.+||+++|.+.+
T Consensus       185 ~~-----~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~  226 (549)
T 4ap3_A          185 DG-----VDFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANY  226 (549)
T ss_dssp             TC-----CCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred             cc-----cccCCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCCc
Confidence            11     1126899999999999999999999999999999999874

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.73  E-value=2.2e-17  Score=168.56  Aligned_cols=224  Identities=16%  Similarity=0.263  Sum_probs=148.1

Q ss_pred             HHHcC--CeEEcCCcEEEEeCCC----CEEEeCCCcEEecCeEEEccCC--CCCCCCCCCCCC-CCCE--EEecCHHHHH
Q 014997           56 YKEKG--IEMIYQDPVTSIDIEK----QTLITNSGKLLKYGSLIVATGC--TASRFPEKIGGY-LPGV--HYIRDVADAD  124 (414)
Q Consensus        56 ~~~~~--i~~~~~~~V~~id~~~----~~V~~~~g~~~~yd~LviAtG~--~~~~~~~~~g~~-~~gv--~~~~~~~~~~  124 (414)
                      .++.+  ++++++++|++++.+.    ..|++++|+++.||+||+|||.  .|. .|.++|.+ +.|.  ++.+...+  
T Consensus       104 ~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~p~-~p~i~G~~~f~G~~~hs~~~~~~--  180 (542)
T 1w4x_A          104 ADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSVPQ-LPNFPGLKDFAGNLYHTGNWPHE--  180 (542)
T ss_dssp             HHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCC-CCCCTTGGGCCSEEEEGGGCCSS--
T ss_pred             HHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCCCCCC-CCCCCCcccCCCceEECCCCCCc--
Confidence            34444  6789999999997643    3788889988999999999995  454 45556643 4452  22111000  


Q ss_pred             HHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc-ccc---cCHHHH----------------------
Q 014997          125 ALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-QRL---FTPSLA----------------------  178 (414)
Q Consensus       125 ~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-~~~---~~~~~~----------------------  178 (414)
                         .....+|+|+|||+|.+|+|+|..|++.+.+|+++.|.+.+. ++.   +.+...                      
T Consensus       181 ---~~~~~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~~~~p~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~G~~  257 (542)
T 1w4x_A          181 ---PVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPARNAPLDPEFLADLKKRYAEFREESRNTPGGTH  257 (542)
T ss_dssp             ---CCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECCCCBCCHHHHHHHHTTHHHHHHHHHTSSSSSC
T ss_pred             ---hhccCCCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCcccccCCCCCCCHHHHHHHHhhCHHHHHHHHhhccccc
Confidence               011358999999999999999999999999999999887652 210   111110                      


Q ss_pred             -------------------------------------------------HHHHHHH------------------------
Q 014997          179 -------------------------------------------------QRYEQLY------------------------  185 (414)
Q Consensus       179 -------------------------------------------------~~~~~~l------------------------  185 (414)
                                                                       +.+.+.+                        
T Consensus       258 ~~~d~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~kr  337 (542)
T 1w4x_A          258 RYQGPKSALEVSDEELVETLERYWQEGGPDILAAYRDILRDRDANERVAEFIRNKIRNTVRDPEVAERLVPKGYPFGTKR  337 (542)
T ss_dssp             CCCCCSCTTTSCHHHHHHHHHHHHHHCSGGGGGSSTTTTTCHHHHHHHHHHHHHHHHHHCSSHHHHHHHSCCSSCSSSSC
T ss_pred             cCccccchhcCCHHHHHHHHHHHHhhcchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHcCCHHHHHhcCCCCCCccccC
Confidence                                                             0011111                        


Q ss_pred             -----------HhCCcEEE--cCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhcCCcccCCCEEE
Q 014997          186 -----------QQNGVKFV--KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQV  252 (414)
Q Consensus       186 -----------~~~gv~i~--~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~g~i~v  252 (414)
                                 .+.+|+++  .+..|++++.+      .|.++| +++++|.||+|+|+++++.++...++... +++.+
T Consensus       338 ~~~~~~y~~~~~~~~v~lv~~~~~~i~~i~~~------gv~~~d-~~~~~D~ii~atG~~~~~~~~~~~~i~g~-~G~~l  409 (542)
T 1w4x_A          338 LILEIDYYEMFNRDNVHLVDTLSAPIETITPR------GVRTSE-REYELDSLVLATGFDALTGALFKIDIRGV-GNVAL  409 (542)
T ss_dssp             CEEESSHHHHTTSTTEEEEETTTSCEEEECSS------EEEESS-CEEECSEEEECCCCCCTTHHHHTSEEECG-GGCBH
T ss_pred             CCCCccHHHHhCCCCEEEEecCCCCceEEcCC------eEEeCC-eEEecCEEEEcCCccccccCcCceeeECC-CCCCH
Confidence                       12356776  35678888643      678888 89999999999999998787776555433 34444


Q ss_pred             cCCC----------C-CCCCcEEEE-ccccccCCccCCcccccccH-HHHHHHHHHHHHHHhc
Q 014997          253 DGQF----------R-TRMPGIFAI-GDVAAFPLKMYDRTARVEHV-DHARQSAQHCIKALLS  302 (414)
Q Consensus       253 d~~~----------~-t~~~~IyA~-GD~a~~~~~~~~~~~~~~~~-~~A~~~a~~aa~~i~~  302 (414)
                      ++..          . .+.||+|++ |+.+..         ...+| ..|..|+++++++|..
T Consensus       410 ~~~w~~~~~~y~~~~v~~~Pn~f~~~G~~~~~---------~~~~~~~~~e~q~~~ia~~i~~  463 (542)
T 1w4x_A          410 KEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPS---------ALSNMLVSIEQHVEWVTDHIAY  463 (542)
T ss_dssp             HHHTTTSCCCBTTTBCTTSTTEEESSCTTSSG---------GGSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhcCchheecccccCCCCceEEEcCCCCCc---------ccccHHHHHHHHHHHHHHHHHH
Confidence            4322          2 156777776 666421         12345 5688899999998864

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.67  E-value=1.1e-15  Score=138.63  Aligned_cols=155  Identities=17%  Similarity=0.224  Sum_probs=113.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC-----------------cccccccC-------HHHHHHHHHHHHhC-
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN-----------------HLLQRLFT-------PSLAQRYEQLYQQN-  188 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~-----------------~~l~~~~~-------~~~~~~~~~~l~~~-  188 (414)
                      .+|+|||||++|+++|..|+++|.+|+++++..                 .++. .++       ..+...+.+.+++. 
T Consensus         4 ~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~~~~~~~~~~~~~~-~~~d~~g~~~~~~~~~l~~~~~~~~   82 (232)
T 2cul_A            4 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLE-RAYDPKDERVWAFHARAKYLLEGLR   82 (232)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHH-HHCCTTCCCHHHHHHHHHHHHHTCT
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcccCccccccchhhHHh-hhccCCCCCHHHHHHHHHHHHHcCC
Confidence            479999999999999999999999999999872                 1111 111       25667788888887 


Q ss_pred             CcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC--------------------Chh---hhhcCCcc
Q 014997          189 GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT--------------------VSP---FERVGLNS  245 (414)
Q Consensus       189 gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~--------------------~~~---l~~~gl~~  245 (414)
                      |++++ +++|+++..+ ++.+..+.+.+|+++.+|.||+|+|..++                    ..+   +++.++..
T Consensus        83 gv~i~-~~~v~~i~~~-~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~~~~~G~~~~~~g~~g~~~~~~l~~~l~~~g~~~  160 (232)
T 2cul_A           83 PLHLF-QATATGLLLE-GNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLGGVVEEAGRLSEASYPDLLEDLSRLGFRF  160 (232)
T ss_dssp             TEEEE-ECCEEEEEEE-TTEEEEEEETTSCCEECSEEEECCTTCSSCEEEETTEEESEEETTEECCSHHHHHHHHTTCCE
T ss_pred             CcEEE-EeEEEEEEEe-CCEEEEEEECCCCEEECCEEEECCCCChhhceecCCccCCCCCCcccchhhhCHHHHhCCCeE
Confidence            99999 4689999754 45566788888888999999999999443                    222   33455544


Q ss_pred             cCCC----------------EEEcC-------CCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997          246 SVGG----------------IQVDG-------QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       246 ~~g~----------------i~vd~-------~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                      .++.                ..+..       ...|++|+|||+|||+ ...          .+..|.+||+.+|.+|+.
T Consensus       161 ~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~t~~p~iya~G~~a-~~g----------~~~~~~~~g~~~a~~i~~  229 (232)
T 2cul_A          161 VEREGEVPETPSTPGYRVRYLAFHPEEWEEKTFRLKRLEGLYAVGLCV-REG----------DYARMSEEGKRLAEHLLH  229 (232)
T ss_dssp             EEEEEEEC-----CCEEEEEEEECGGGEETTTTEETTSBSEEECGGGT-SCC----------CHHHHHHHHHHHHHHHHH
T ss_pred             EccccccCcCCCCCCccCchhhcccCCCCCccccccccccceeeeecc-cCc----------cHHHHHHHHHHHHHHHHh
Confidence            3111                00110       1227999999999999 432          456689999999999974

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=99.52  E-value=3.5e-13  Score=136.03  Aligned_cols=211  Identities=17%  Similarity=0.226  Sum_probs=126.7

Q ss_pred             HHcCCeEEcCCcEEEEeCCC----------CEEEeCCC-----cEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHH
Q 014997           57 KEKGIEMIYQDPVTSIDIEK----------QTLITNSG-----KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVA  121 (414)
Q Consensus        57 ~~~~i~~~~~~~V~~id~~~----------~~V~~~~g-----~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~  121 (414)
                      ++.+..++++++|+++.+..          .+|++.++     +++.+++||+|||..|. +|...+. .+.+++...+.
T Consensus       156 ~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~ar~vVlatG~~P~-iP~~~~~-~g~v~Hss~y~  233 (501)
T 4b63_A          156 QQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRTRKVVIAIGGTAK-MPSGLPQ-DPRIIHSSKYC  233 (501)
T ss_dssp             HTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEEEEEEEEEECCCCEEC-CCTTSCC-CTTEEEGGGHH
T ss_pred             HHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEEEEeCEEEECcCCCCC-CCCCCCC-Ccceeeccccc
Confidence            34567789999999986432          36666543     36899999999998875 4543332 24455544333


Q ss_pred             HHH-HHHHhhcCCCeEEEECCChHHHHHHHHHHhC--CCcEEEEeeCCccccc--------ccCHHHHHH----------
Q 014997          122 DAD-ALISSLEKAKKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQR--------LFTPSLAQR----------  180 (414)
Q Consensus       122 ~~~-~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~l~~--------~~~~~~~~~----------  180 (414)
                      +.. .+......+|+|+|||+|.+|+|++..|++.  +.+|+++.|.+.+.+.        .+.++..+.          
T Consensus       234 ~~~~~~~~~~~~gKrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~~~~p~~~s~~~~~~f~p~~~~~f~~l~~~~r~  313 (501)
T 4b63_A          234 TTLPALLKDKSKPYNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDSAMRPSDDSPFVNEIFNPERVDKFYSQSAAERQ  313 (501)
T ss_dssp             HHHHHHSCCTTSCCEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSSSCCBCCCCTTGGGGGSTTHHHHHHTSCHHHHH
T ss_pred             cchhhccccccCCcEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCCccccccccccchhhcCHHHHHHHHhCCHHHHH
Confidence            322 2222234789999999999999999999864  6899999998654321        112111111          


Q ss_pred             ---------------------HHH-----HHH-----hCCcEEEcCceEEEEEecCC-CcE-----------EEEEeCCC
Q 014997          181 ---------------------YEQ-----LYQ-----QNGVKFVKGASIKNLEAGSD-GRV-----------AAVKLEDG  217 (414)
Q Consensus       181 ---------------------~~~-----~l~-----~~gv~i~~~~~v~~i~~~~~-~~~-----------~~v~~~~g  217 (414)
                                           +.+     .+.     .....+..+..+..+..... +.+           ..+.+.+|
T Consensus       314 ~~~~~~~~~~~~~v~~~li~~i~~~~y~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~v~~~dg  393 (501)
T 4b63_A          314 RSLLADKATNYSVVRLELIEEIYNDMYLQRVKNPDETQWQHRILPERKITRVEHHGPQSRMRIHLKSSKPESEGAANDVK  393 (501)
T ss_dssp             HHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCSCGGGCSSEEECSEEEEEEECCSSSSCEEEEEEESCC--------CC
T ss_pred             HHHHHHHhhhhcccCHHHHHHHHHHHHhhccCCCcccccceeecCCcceeeeeecCCCCeEEEEeeeeEEeCCeeEeCCC
Confidence                                 000     010     11235666666666653222 221           13456788


Q ss_pred             cEEecCEEEEccCCcCCCh-hhh-hc-CCc-ccCCCEEEcCCCCC--------CCCcEEEEccc
Q 014997          218 STIDADTIVIGIGAKPTVS-PFE-RV-GLN-SSVGGIQVDGQFRT--------RMPGIFAIGDV  269 (414)
Q Consensus       218 ~~i~~D~vi~a~G~~p~~~-~l~-~~-gl~-~~~g~i~vd~~~~t--------~~~~IyA~GD~  269 (414)
                      +++++|.||+|||++++.. +|. .. .+. ..+|...|+.+++.        ..++||+-|-+
T Consensus       394 ~~~~~D~VI~ATGy~~~~p~~L~~~~~~l~~d~~g~~~v~rdy~~~~~~~~~~~~~~i~~qg~~  457 (501)
T 4b63_A          394 ETLEVDALMVATGYNRNAHERLLSKVQHLRPTGQDQWKPHRDYRVEMDPSKVSSEAGIWLQGCN  457 (501)
T ss_dssp             CEEEESEEEECCCEECCTHHHHTGGGGGGSSTTCCSCCBCTTSBBCCCTTTBCTTCEEEECSCC
T ss_pred             eEEECCEEEECcCCCCCCcchhcchhhhcCcCcCCCeeeCCCcEEeecCCccCCCceEEecCCC
Confidence            9999999999999998863 222 11 122 23467778776543        24679999954

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.29  E-value=1.2e-11  Score=115.62  Aligned_cols=165  Identities=17%  Similarity=0.180  Sum_probs=111.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhC-CCcEEEEeeCCccccc------------------------------------c-cC
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPENHLLQR------------------------------------L-FT  174 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~l~~------------------------------------~-~~  174 (414)
                      ..+|+|||+|++|+.+|..|++. |.+|+++++.+.+...                                    . ..
T Consensus        39 ~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  118 (284)
T 1rp0_A           39 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHA  118 (284)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCH
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEEEecCH
Confidence            35799999999999999999997 9999999988654210                                    0 11


Q ss_pred             HHHHHHHHHHHHh-CCcEEEcCceEEEEEecCCCcEEEEEeC---------CC-----cEEecCEEEEccCCcCCChh--
Q 014997          175 PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLE---------DG-----STIDADTIVIGIGAKPTVSP--  237 (414)
Q Consensus       175 ~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~~~v~~~---------~g-----~~i~~D~vi~a~G~~p~~~~--  237 (414)
                      .++...+.+.+.+ .|+++++++.|+++..+ ++.+..+.+.         +|     .++++|.||+|+|..++...  
T Consensus       119 ~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~-~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~~~~~  197 (284)
T 1rp0_A          119 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATG  197 (284)
T ss_dssp             HHHHHHHHHHHHTSTTEEEEETEEEEEEEEE-TTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTTTTHH
T ss_pred             HHHHHHHHHHHHhcCCCEEEcCcEEEEEEec-CCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHHHHHH
Confidence            3344455555655 69999999999999754 4555455542         32     57999999999998876431  


Q ss_pred             ---hhhcC----CcccCCCEEEcC-------CCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997          238 ---FERVG----LNSSVGGIQVDG-------QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       238 ---l~~~g----l~~~~g~i~vd~-------~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                         +...+    +... .++.++.       ..+++.|++|++||++...   ++.......|..+..+|..+|.++..
T Consensus       198 ~~~~~~~g~~~~v~~~-~g~~~~~~~~~~v~~~~~~~p~i~a~G~~~~~~---~g~~~~gp~~~~~~~sG~~~a~~i~~  272 (284)
T 1rp0_A          198 VKRLKSIGMIDHVPGM-KALDMNTAEDAIVRLTREVVPGMIVTGMEVAEI---DGAPRMGPTFGAMMISGQKAGQLALK  272 (284)
T ss_dssp             HHHHHHTTSSSCCCCC-EEECHHHHHHHHHHHCEEEETTEEECTHHHHHH---HTCEECCSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhccCCCCcCCc-CCchhhhhhHHHhhccccccCCEEEEeeehhhh---cCCCCcChHHHHHHHhHHHHHHHHHH
Confidence               22222    2212 2343332       3456779999999987531   11111112566788999999999875

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=99.19  E-value=7.5e-13  Score=132.62  Aligned_cols=223  Identities=15%  Similarity=0.122  Sum_probs=129.3

Q ss_pred             HhHHHHcCCeEEcCCcEEEEeCCCCEE---EeC-CCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHH
Q 014997           53 PEWYKEKGIEMIYQDPVTSIDIEKQTL---ITN-SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS  128 (414)
Q Consensus        53 ~~~~~~~~i~~~~~~~V~~id~~~~~V---~~~-~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~  128 (414)
                      .+.+++.|++++.+++| ++..++..+   .+. ++.++.+|.||+|||+.+..++...+   +...+...+.-+.+.-.
T Consensus       126 ~~~~~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~~~~g~~~a~~VVlAtGg~~~~~~~~~~---~~~~tGdgi~~a~~aGa  201 (472)
T 2e5v_A          126 LKLAREEGIPIIEDRLV-EIRVKDGKVTGFVTEKRGLVEDVDKLVLATGGYSYLYEYSST---QSTNIGDGMAIAFKAGT  201 (472)
T ss_dssp             HHHHHHTTCCEECCCEE-EEEEETTEEEEEEETTTEEECCCSEEEECCCCCGGGSSSBSS---CTTCSCHHHHHHHHTTC
T ss_pred             HHHHHhCCCEEEECcEE-EEEEeCCEEEEEEEEeCCCeEEeeeEEECCCCCcccCccccC---CCCCchHHHHHHHHcCC
Confidence            34456679999999889 987665543   332 23358899999999998754332111   11111111111111000


Q ss_pred             hhcC-----C-CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHH--------HHHHHHHHHHhCCcEEEc
Q 014997          129 SLEK-----A-KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPS--------LAQRYEQLYQQNGVKFVK  194 (414)
Q Consensus       129 ~~~~-----~-~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~--------~~~~~~~~l~~~gv~i~~  194 (414)
                      .+..     . ..++++|+|  +++++..++..|..+ +..++++++++ +++.        ++..+.+.+++.|. +++
T Consensus       202 ~~~d~e~~q~~p~~~~~ggg--~~~~ae~~~~~G~~~-v~~~g~rf~~~-~~~~~el~~rd~v~~~i~~~~~~~~~-v~l  276 (472)
T 2e5v_A          202 ILADMEFVQFHPTVTSLDGE--VFLLTETLRGEGAQI-INENGERFLFN-YDKRGELAPRDILSRAIYIEMLKGHK-VFI  276 (472)
T ss_dssp             CEECTTCEEEEEEEECGGGC--CEECCTHHHHTTCEE-EETTCCCGGGG-TCTTGGGSCHHHHHHHHHHHHHHTCC-EEE
T ss_pred             CEeCCcceEEEeEEEccCCC--ceeeehhhcCCceEE-ECCCCCCCCcc-CCcccCcCchhHHHHHHHHHHHhCCc-EEE
Confidence            0111     1 133455766  888888899999877 78888888865 3433        25566666666653 322


Q ss_pred             CceEEEEEecCCCcEEEEEeCCCcEEe-cCEEEEccCCcCCChhhhhcCC-cccCCCEEEcCCCCCCCCcEEEEcccccc
Q 014997          195 GASIKNLEAGSDGRVAAVKLEDGSTID-ADTIVIGIGAKPTVSPFERVGL-NSSVGGIQVDGQFRTRMPGIFAIGDVAAF  272 (414)
Q Consensus       195 ~~~v~~i~~~~~~~~~~v~~~~g~~i~-~D~vi~a~G~~p~~~~l~~~gl-~~~~g~i~vd~~~~t~~~~IyA~GD~a~~  272 (414)
                      +..  .+    +.      +  .+.++ .+.++++.|..|+ +++.-.+. ....|+|.||+++||++|+|||+|||+..
T Consensus       277 d~~--~~----~~------~--~~~~~~~~~~~~~~G~dp~-~~i~v~p~~~~~~GGI~vd~~~~t~ipgLyAaGd~a~~  341 (472)
T 2e5v_A          277 DLS--KI----ED------F--ERKFPVVAKYLARHGHNYK-VKIPIFPAAHFVDGGIRVNIRGESNIVNLYAIGEVSDS  341 (472)
T ss_dssp             ECT--TC----TT------H--HHHCHHHHHHHHHTTCCTT-SCEECEEEEEEESCEEECCTTCBCSSBTEEECGGGEEC
T ss_pred             ecc--ch----HH------H--HHHhHHHHHHHHHhCcCcc-cceEeehhhceeCCCeEECCCCccccCCEEecchhccc
Confidence            211  00    00      0  01233 4677888899998 65442211 12358999999999999999999999872


Q ss_pred             CCccCCcccccc--cHHHHHHHHHHHHHHHhc
Q 014997          273 PLKMYDRTARVE--HVDHARQSAQHCIKALLS  302 (414)
Q Consensus       273 ~~~~~~~~~~~~--~~~~A~~~a~~aa~~i~~  302 (414)
                      ..  .|. .+..  .+..+...|+.|++++.+
T Consensus       342 ~~--hg~-~rl~~~sl~~~~v~G~~a~~~~a~  370 (472)
T 2e5v_A          342 GL--HGA-NRLASNSLLEGLVFGINLPRYVDS  370 (472)
T ss_dssp             SS--STT-SCCTTHHHHHHHHHHHHGGGTTTS
T ss_pred             cc--CCC-CCCCcccHHHHHHHHHHHHHHHHh
Confidence            11  111 0111  234456667777777654

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=99.08  E-value=3.1e-11  Score=121.59  Aligned_cols=148  Identities=15%  Similarity=0.118  Sum_probs=103.5

Q ss_pred             ecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHH---------HHh--hcCCCeEEEECCChHHHHHHHHHHhCC
Q 014997           88 KYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADAL---------ISS--LEKAKKVVVVGGGYIGMEVAAAAVGWK  156 (414)
Q Consensus        88 ~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~---------~~~--~~~~~~vvVvGgG~~g~e~A~~l~~~g  156 (414)
                      .||+++++||++++. +++.+.+.+++.......+...+         ...  .....+|+|||||++|+.+|..|++.|
T Consensus        37 ~~~~l~~~~g~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIVGgG~aGl~aA~~La~~G  115 (497)
T 2bry_A           37 SFQGLCRALGVESGG-GLSQYHKIKAQLNYWSAKSLWAKLDKRASQPVYQQGQACTNTKCLVVGAGPCGLRAAVELALLG  115 (497)
T ss_dssp             HHHHHHHHHTCCTTC-HHHHHHHHHHTCCSTTTHHHHHHHHHHHTSGGGGGGTTTTTCEEEEECCSHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCCCCC-CcEeehhhHHHHHHHHHHHhhhhhhhhhccccccCccccCCCCEEEECccHHHHHHHHHHHHCC
Confidence            578999999999753 33333333444444455554444         111  224578999999999999999999999


Q ss_pred             CcEEEEeeCCccccc----cc----------------------------CHHHHHHHHHHHHhCCcEEEcCceEEEEEec
Q 014997          157 LDTTIIFPENHLLQR----LF----------------------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAG  204 (414)
Q Consensus       157 ~~Vtlv~~~~~~l~~----~~----------------------------~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~  204 (414)
                      .+|+++++.+.+...    ..                            ...+.+.+.+.+++.|+++++++.|+++..+
T Consensus       116 ~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~  195 (497)
T 2bry_A          116 ARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQLLLLKVALLLGVEIHWGVKFTGLQPP  195 (497)
T ss_dssp             CEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEECC
T ss_pred             CeEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEe
Confidence            999999987654200    00                            0455567777788899999999999999853


Q ss_pred             C-CCcEEEEEe--C-CC--cEEecCEEEEccCCcCCCh
Q 014997          205 S-DGRVAAVKL--E-DG--STIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       205 ~-~~~~~~v~~--~-~g--~~i~~D~vi~a~G~~p~~~  236 (414)
                      + ++....|.+  . +|  +++.+|.||.|+|..+...
T Consensus       196 ~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~r  233 (497)
T 2bry_A          196 PRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVPE  233 (497)
T ss_dssp             CSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCCT
T ss_pred             cCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCcccc
Confidence            2 222234555  4 66  4699999999999987653

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.86  E-value=1.2e-08  Score=103.27  Aligned_cols=112  Identities=15%  Similarity=0.300  Sum_probs=87.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc-------------------------------------c---
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------------------------------------L---  172 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-------------------------------------~---  172 (414)
                      ..+|+|||+|+.|+.+|..|++.|.+|+|+++.+.+..+                                     .   
T Consensus       107 ~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i~~~  186 (549)
T 3nlc_A          107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDP  186 (549)
T ss_dssp             CCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCSCCT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEeccc
Confidence            468999999999999999999999999999987532000                                     0   


Q ss_pred             ---------------------------c----CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEe
Q 014997          173 ---------------------------F----TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTID  221 (414)
Q Consensus       173 ---------------------------~----~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~  221 (414)
                                                 .    ...+.+.+.+.+++.|++++++++|+++..+ ++.+..|.+.+|+++.
T Consensus       187 ~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~-~~~v~gV~l~~G~~i~  265 (549)
T 3nlc_A          187 NFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHME-DGQITGVTLSNGEEIK  265 (549)
T ss_dssp             TCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEES-SSBEEEEEETTSCEEE
T ss_pred             cccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEe-CCEEEEEEECCCCEEE
Confidence                                       0    0345556777788899999999999999864 5567778999999999


Q ss_pred             cCEEEEccCCcCCC--hhhhhcCCcc
Q 014997          222 ADTIVIGIGAKPTV--SPFERVGLNS  245 (414)
Q Consensus       222 ~D~vi~a~G~~p~~--~~l~~~gl~~  245 (414)
                      ||.||+|+|..+..  .++...|+..
T Consensus       266 Ad~VVlA~G~~s~~~~~~l~~~Gi~~  291 (549)
T 3nlc_A          266 SRHVVLAVGHSARDTFEMLHERGVYM  291 (549)
T ss_dssp             CSCEEECCCTTCHHHHHHHHHTTCCC
T ss_pred             CCEEEECCCCChhhHHHHHHHcCCCc
Confidence            99999999998852  2355555543

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.83  E-value=3.3e-08  Score=94.28  Aligned_cols=96  Identities=17%  Similarity=0.151  Sum_probs=77.7

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc---------------------c-cC---------HHHHHHHH
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR---------------------L-FT---------PSLAQRYE  182 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~---------------------~-~~---------~~~~~~~~  182 (414)
                      .+|+|||+|+.|+.+|..|+++|.+|+++++.+.+...                     . .+         ..+.+.+.
T Consensus         4 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   83 (357)
T 4a9w_A            4 VDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAYLA   83 (357)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHHHH
Confidence            47999999999999999999999999999988653110                     0 00         56778888


Q ss_pred             HHHHhCCcEEEcCceEEEEEecCCCcEEE-EEeCCCcEEecCEEEEccCCc
Q 014997          183 QLYQQNGVKFVKGASIKNLEAGSDGRVAA-VKLEDGSTIDADTIVIGIGAK  232 (414)
Q Consensus       183 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~-v~~~~g~~i~~D~vi~a~G~~  232 (414)
                      +.+++.|++++.+++|+++...+ +. .. |.+++| ++.+|.||+|+|..
T Consensus        84 ~~~~~~~~~~~~~~~v~~i~~~~-~~-~~~v~~~~g-~~~~d~vV~AtG~~  131 (357)
T 4a9w_A           84 QYEQKYALPVLRPIRVQRVSHFG-ER-LRVVARDGR-QWLARAVISATGTW  131 (357)
T ss_dssp             HHHHHTTCCEECSCCEEEEEEET-TE-EEEEETTSC-EEEEEEEEECCCSG
T ss_pred             HHHHHcCCEEEcCCEEEEEEECC-Cc-EEEEEeCCC-EEEeCEEEECCCCC
Confidence            88899999999999999998653 33 24 777777 89999999999963

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.73  E-value=4.3e-08  Score=92.69  Aligned_cols=100  Identities=18%  Similarity=0.239  Sum_probs=80.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccc------------------cCHHHHHHHHHHHHhCCcEEEcC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------------------FTPSLAQRYEQLYQQNGVKFVKG  195 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~------------------~~~~~~~~~~~~l~~~gv~i~~~  195 (414)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++.+.+...+                  ...++...+.+.+++.|++++++
T Consensus         8 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (332)
T 3lzw_A            8 YDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTICLE   87 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEEECS
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcEEcc
Confidence            589999999999999999999999999999976432100                  12566777888888889999999


Q ss_pred             ceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCC---cCCC
Q 014997          196 ASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA---KPTV  235 (414)
Q Consensus       196 ~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~---~p~~  235 (414)
                      +.|.++...+++. ..+.+.+|+ +.+|.+|+|+|.   .|..
T Consensus        88 ~~v~~i~~~~~~~-~~v~~~~g~-~~~d~vVlAtG~~~~~p~~  128 (332)
T 3lzw_A           88 QAVESVEKQADGV-FKLVTNEET-HYSKTVIITAGNGAFKPRK  128 (332)
T ss_dssp             CCEEEEEECTTSC-EEEEESSEE-EEEEEEEECCTTSCCEECC
T ss_pred             CEEEEEEECCCCc-EEEEECCCE-EEeCEEEECCCCCcCCCCC
Confidence            9999998654423 357788876 999999999999   6653

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=98.71  E-value=3.9e-08  Score=96.88  Aligned_cols=83  Identities=18%  Similarity=0.273  Sum_probs=63.5

Q ss_pred             HhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccC--------CcCCChhhhhc--CCcccCCCEEEcCC
Q 014997          186 QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG--------AKPTVSPFERV--GLNSSVGGIQVDGQ  255 (414)
Q Consensus       186 ~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G--------~~p~~~~l~~~--gl~~~~g~i~vd~~  255 (414)
                      ++.| ++++++.|++|+.++++ + .|.+.+|+++.||.||+|+|        +.|+.+..+..  +.......++|+..
T Consensus       215 ~~~g-~i~~~~~V~~i~~~~~~-v-~v~~~~g~~~~ad~vi~a~~~~~l~~i~~~p~l~~~~~~~~~~~~~~~~~kv~~~  291 (431)
T 3k7m_X          215 QEIP-EIRLQTVVTGIDQSGDV-V-NVTVKDGHAFQAHSVIVATPMNTWRRIVFTPALPERRRSVIEEGHGGQGLKILIH  291 (431)
T ss_dssp             TTCS-CEESSCCEEEEECSSSS-E-EEEETTSCCEEEEEEEECSCGGGGGGSEEESCCCHHHHHHHHHCCCCCEEEEEEE
T ss_pred             hhCC-ceEeCCEEEEEEEcCCe-E-EEEECCCCEEEeCEEEEecCcchHhheeeCCCCCHHHHHHHHhCCCcceEEEEEE
Confidence            3456 99999999999865444 3 57888888899999999999        88887653322  11122346999999


Q ss_pred             CCCCCCcEEEEccccc
Q 014997          256 FRTRMPGIFAIGDVAA  271 (414)
Q Consensus       256 ~~t~~~~IyA~GD~a~  271 (414)
                      ++|+.++||+.||+..
T Consensus       292 ~~~~~~~i~~~~d~~~  307 (431)
T 3k7m_X          292 VRGAEAGIECVGDGIF  307 (431)
T ss_dssp             EESCCTTEEEEBSSSS
T ss_pred             ECCCCcCceEcCCCCE
Confidence            9999999999999843

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=98.71  E-value=7.7e-08  Score=94.50  Aligned_cols=100  Identities=23%  Similarity=0.309  Sum_probs=78.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccc---------------------------------------
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL---------------------------------------  172 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~---------------------------------------  172 (414)
                      ...+|+|||||..|+.+|..|++.|.+|+++++.+.+....                                       
T Consensus        26 ~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~~~  105 (417)
T 3v76_A           26 EKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRPQD  105 (417)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCHHH
Confidence            34689999999999999999999999999999876431100                                       


Q ss_pred             ------------------------cCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEc
Q 014997          173 ------------------------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG  228 (414)
Q Consensus       173 ------------------------~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a  228 (414)
                                              -...+.+.+.+.+++.|++++++++|+++..++++  ..|.+.+| ++.||.||+|
T Consensus       106 ~~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~--~~V~~~~g-~i~ad~VIlA  182 (417)
T 3v76_A          106 FVALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASG--FRVTTSAG-TVDAASLVVA  182 (417)
T ss_dssp             HHHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTE--EEEEETTE-EEEESEEEEC
T ss_pred             HHHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCE--EEEEECCc-EEEeeEEEEC
Confidence                                    01245566777788889999999999999865333  46778887 8999999999


Q ss_pred             cCCcCC
Q 014997          229 IGAKPT  234 (414)
Q Consensus       229 ~G~~p~  234 (414)
                      +|..+.
T Consensus       183 tG~~S~  188 (417)
T 3v76_A          183 SGGKSI  188 (417)
T ss_dssp             CCCSSC
T ss_pred             CCCccC
Confidence            998763

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.69  E-value=2.8e-08  Score=96.63  Aligned_cols=101  Identities=24%  Similarity=0.408  Sum_probs=77.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc-c-ccC---------HHHHHHHHHHHHhCCcEEEcCceEEE
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-R-LFT---------PSLAQRYEQLYQQNGVKFVKGASIKN  200 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~-~~~---------~~~~~~~~~~l~~~gv~i~~~~~v~~  200 (414)
                      +.-+|+|||||+.|+.+|..|...+.+|+++++.+.+.- + .++         +++.....+.+++.||+++++++|++
T Consensus         8 ~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~~V~~   87 (385)
T 3klj_A            8 KSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSEFATS   87 (385)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSCCEEE
T ss_pred             CCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCCEEEE
Confidence            456899999999999999999888899999998875421 1 011         11112234567889999999999999


Q ss_pred             EEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCCh
Q 014997          201 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       201 i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  236 (414)
                      ++...  +  .|.+++|+++.+|.+|+|||.+|...
T Consensus        88 id~~~--~--~v~~~~g~~~~yd~lvlAtG~~p~~p  119 (385)
T 3klj_A           88 IDPNN--K--LVTLKSGEKIKYEKLIIASGSIANKI  119 (385)
T ss_dssp             EETTT--T--EEEETTSCEEECSEEEECCCEEECCC
T ss_pred             EECCC--C--EEEECCCCEEECCEEEEecCCCcCCC
Confidence            98542  2  67889999999999999999988643

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.69  E-value=6.8e-08  Score=91.52  Aligned_cols=101  Identities=16%  Similarity=0.225  Sum_probs=78.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC----cc------------ccc----ccCHHHHHHHHHHHHhCCcE
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN----HL------------LQR----LFTPSLAQRYEQLYQQNGVK  191 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~----~~------------l~~----~~~~~~~~~~~~~l~~~gv~  191 (414)
                      ..++|+|||+|+.|+.+|..|++.|.+|+++++.+    .+            ++.    ...+++...+.+.+++.|++
T Consensus        21 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~  100 (338)
T 3itj_A           21 VHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKFGTE  100 (338)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHHHcCCE
Confidence            35789999999999999999999999999999843    11            001    11246777888889999999


Q ss_pred             EEcCceEEEEEecCCCcEEEEEe---CCCcEEecCEEEEccCCcCCC
Q 014997          192 FVKGASIKNLEAGSDGRVAAVKL---EDGSTIDADTIVIGIGAKPTV  235 (414)
Q Consensus       192 i~~~~~v~~i~~~~~~~~~~v~~---~~g~~i~~D~vi~a~G~~p~~  235 (414)
                      ++.++ +.++.... +.+ .+.+   .++..+.+|.+|+|+|..|..
T Consensus       101 i~~~~-v~~i~~~~-~~~-~v~~~~~~~~~~~~~d~vvlAtG~~~~~  144 (338)
T 3itj_A          101 IITET-VSKVDLSS-KPF-KLWTEFNEDAEPVTTDAIILATGASAKR  144 (338)
T ss_dssp             EECSC-EEEEECSS-SSE-EEEETTCSSSCCEEEEEEEECCCEEECC
T ss_pred             EEEeE-EEEEEEcC-CEE-EEEEEecCCCcEEEeCEEEECcCCCcCC
Confidence            99998 88997543 332 4555   466789999999999998764

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=98.68  E-value=3.1e-08  Score=98.06  Aligned_cols=100  Identities=22%  Similarity=0.337  Sum_probs=77.2

Q ss_pred             CeEEEECCChHHHHHHHHHHh---CCCcEEEEeeCCcccccc---------c-CHHHHHHHHHHHHhCCcEEEcCceEEE
Q 014997          134 KKVVVVGGGYIGMEVAAAAVG---WKLDTTIIFPENHLLQRL---------F-TPSLAQRYEQLYQQNGVKFVKGASIKN  200 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~---~g~~Vtlv~~~~~~l~~~---------~-~~~~~~~~~~~l~~~gv~i~~~~~v~~  200 (414)
                      ++|+|||||+.|+.+|..|++   .|.+|+++++.+.+....         . ..++...+.+.+++.||+++. ..++.
T Consensus         5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~   83 (437)
T 3sx6_A            5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIA-QSAEQ   83 (437)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTTCEEEC-SCEEE
T ss_pred             CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCCCEEEE-eEEEE
Confidence            689999999999999999999   799999999987642110         1 112223356677889999986 58899


Q ss_pred             EEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhh
Q 014997          201 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF  238 (414)
Q Consensus       201 i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l  238 (414)
                      ++.+.  .  .|.+++|+++.+|.+|+|+|.+|+...+
T Consensus        84 id~~~--~--~V~~~~g~~i~~d~lviAtG~~~~~~~i  117 (437)
T 3sx6_A           84 IDAEA--Q--NITLADGNTVHYDYLMIATGPKLAFENV  117 (437)
T ss_dssp             EETTT--T--EEEETTSCEEECSEEEECCCCEECGGGS
T ss_pred             EEcCC--C--EEEECCCCEEECCEEEECCCCCcCcccC
Confidence            97542  2  5788899899999999999999875433

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.68  E-value=1.6e-07  Score=90.07  Aligned_cols=99  Identities=15%  Similarity=0.196  Sum_probs=79.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc------------------ccCHHHHHHHHHHHHhCCcEEEc
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------LFTPSLAQRYEQLYQQNGVKFVK  194 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------------------~~~~~~~~~~~~~l~~~gv~i~~  194 (414)
                      ..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+...                  ....++.+.+.+.+++.|++++.
T Consensus        14 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~   93 (360)
T 3ab1_A           14 MRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVESLWAQAERYNPDVVL   93 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHHTTCCEEEC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccccCCCcccccCCCCCCCCHHHHHHHHHHHHHHhCCEEEc
Confidence            468999999999999999999999999999987643100                  01246667777888888999999


Q ss_pred             CceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCc
Q 014997          195 GASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  232 (414)
Q Consensus       195 ~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~  232 (414)
                      ++.|+.+...+++. ..|.+.+|+++.+|.+|+|+|..
T Consensus        94 ~~~v~~i~~~~~~~-~~v~~~~g~~~~~~~li~AtG~~  130 (360)
T 3ab1_A           94 NETVTKYTKLDDGT-FETRTNTGNVYRSRAVLIAAGLG  130 (360)
T ss_dssp             SCCEEEEEECTTSC-EEEEETTSCEEEEEEEEECCTTC
T ss_pred             CCEEEEEEECCCce-EEEEECCCcEEEeeEEEEccCCC
Confidence            99999998654433 36778888899999999999984

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.67  E-value=3.2e-07  Score=93.26  Aligned_cols=103  Identities=16%  Similarity=0.196  Sum_probs=82.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc--------------------c----------------cCHH
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------------------L----------------FTPS  176 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~--------------------~----------------~~~~  176 (414)
                      ..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+...                    .                -.++
T Consensus        21 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~~e  100 (549)
T 4ap3_A           21 SYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQPE  100 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBHHH
T ss_pred             CCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCHHH
Confidence            358999999999999999999999999999986532100                    0                1145


Q ss_pred             HHHHHHHHHHhCCc--EEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccC--CcCCC
Q 014997          177 LAQRYEQLYQQNGV--KFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG--AKPTV  235 (414)
Q Consensus       177 ~~~~~~~~l~~~gv--~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G--~~p~~  235 (414)
                      +.+.+.+..++.|+  +++++++|++++.+++.....|.+.+|+++.||.||+|+|  .+|..
T Consensus       101 i~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~  163 (549)
T 4ap3_A          101 ILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANT  163 (549)
T ss_dssp             HHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCC
T ss_pred             HHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCC
Confidence            67778888888898  8999999999986655555678899999999999999999  55553

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.67  E-value=1.3e-07  Score=89.71  Aligned_cols=98  Identities=17%  Similarity=0.228  Sum_probs=78.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc------------------cccCHHHHHHHHHHHHhCCcEEEc
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------RLFTPSLAQRYEQLYQQNGVKFVK  194 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~------------------~~~~~~~~~~~~~~l~~~gv~i~~  194 (414)
                      ..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+..                  .....++...+.+.+++.+++++.
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~   84 (335)
T 2zbw_A            5 HTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKGLVEQVAPFNPVYSL   84 (335)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHGGGCCEEEE
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHHHHHHHHHcCCEEEe
Confidence            35799999999999999999999999999998764311                  001245666677777888999999


Q ss_pred             CceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCc
Q 014997          195 GASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  232 (414)
Q Consensus       195 ~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~  232 (414)
                      +++|..++..++  ...+.+.+|+++.+|.+|+|+|..
T Consensus        85 ~~~v~~i~~~~~--~~~v~~~~g~~~~~~~lv~AtG~~  120 (335)
T 2zbw_A           85 GERAETLEREGD--LFKVTTSQGNAYTAKAVIIAAGVG  120 (335)
T ss_dssp             SCCEEEEEEETT--EEEEEETTSCEEEEEEEEECCTTS
T ss_pred             CCEEEEEEECCC--EEEEEECCCCEEEeCEEEECCCCC
Confidence            999999986533  335778888889999999999984

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.66  E-value=1.2e-07  Score=89.13  Aligned_cols=100  Identities=20%  Similarity=0.293  Sum_probs=78.7

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC--Cccc--------cc---ccCHHHHHHHHHHHHhCCcEEEcCceEEE
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE--NHLL--------QR---LFTPSLAQRYEQLYQQNGVKFVKGASIKN  200 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~--~~~l--------~~---~~~~~~~~~~~~~l~~~gv~i~~~~~v~~  200 (414)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++.  ..+.        +.   ....++...+.+.+++.|++++. ..|.+
T Consensus        16 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~   94 (323)
T 3f8d_A           16 FDVIIVGLGPAAYGAALYSARYMLKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLL-DIVEK   94 (323)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSTTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHTTTCCEEE-SCEEE
T ss_pred             cCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCeecccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEE-EEEEE
Confidence            58999999999999999999999999999985  1110        11   11246777778888889999999 88999


Q ss_pred             EEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCCh
Q 014997          201 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       201 i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  236 (414)
                      +..+++.  ..+.+.+|.++.+|.+|+|+|..|...
T Consensus        95 i~~~~~~--~~v~~~~g~~~~~d~lvlAtG~~~~~~  128 (323)
T 3f8d_A           95 IENRGDE--FVVKTKRKGEFKADSVILGIGVKRRKL  128 (323)
T ss_dssp             EEEC--C--EEEEESSSCEEEEEEEEECCCCEECCC
T ss_pred             EEecCCE--EEEEECCCCEEEcCEEEECcCCCCccC
Confidence            9764332  357788888999999999999987643

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.66  E-value=2e-07  Score=90.23  Aligned_cols=97  Identities=22%  Similarity=0.254  Sum_probs=79.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc-----------------------------------------
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----------------------------------------  171 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----------------------------------------  171 (414)
                      ..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+...                                         
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~~   90 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHNKS   90 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEETTEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeCCce
Confidence            468999999999999999999999999999987644210                                         


Q ss_pred             --ccC-----------HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997          172 --LFT-----------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       172 --~~~-----------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (414)
                        .++           ..+.+.+.+.+++.|++++.+++|++++.  ++   .|.+.+|+++.+|.||.|.|..+.
T Consensus        91 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~~---~v~~~~g~~~~ad~vV~AdG~~s~  161 (379)
T 3alj_A           91 VSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADP--VG---RLTLQTGEVLEADLIVGADGVGSK  161 (379)
T ss_dssp             EEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET--TT---EEEETTSCEEECSEEEECCCTTCH
T ss_pred             eeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe--CC---EEEECCCCEEEcCEEEECCCccHH
Confidence              000           34466677778888999999999999985  44   577888989999999999998764

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.64  E-value=1.7e-07  Score=87.84  Aligned_cols=101  Identities=20%  Similarity=0.268  Sum_probs=78.3

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCC--ccc---------c--cccCHHHHHHHHHHHHhCCcEEEcCceEEEE
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN--HLL---------Q--RLFTPSLAQRYEQLYQQNGVKFVKGASIKNL  201 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~--~~l---------~--~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i  201 (414)
                      +|+|||+|+.|+.+|..|++.|.+|+++++..  ...         .  ....+.+...+.+.+++.|++++.++++..+
T Consensus         3 dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i   82 (310)
T 1fl2_A            3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL   82 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCceeccccccccccCcCCCCHHHHHHHHHHHHHHcCCeEEccCEEEEE
Confidence            68999999999999999999999999997531  110         0  0012466777888888899999999999999


Q ss_pred             EecCC-CcEEEEEeCCCcEEecCEEEEccCCcCCC
Q 014997          202 EAGSD-GRVAAVKLEDGSTIDADTIVIGIGAKPTV  235 (414)
Q Consensus       202 ~~~~~-~~~~~v~~~~g~~i~~D~vi~a~G~~p~~  235 (414)
                      ....+ +....+.+++|+++.+|.+|+|+|..|..
T Consensus        83 ~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~  117 (310)
T 1fl2_A           83 IPAAVEGGLHQIETASGAVLKARSIIVATGAKWRN  117 (310)
T ss_dssp             ECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             EecccCCceEEEEECCCCEEEeCEEEECcCCCcCC
Confidence            75322 22346778888889999999999998753

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.63  E-value=1.6e-07  Score=87.12  Aligned_cols=99  Identities=12%  Similarity=0.257  Sum_probs=76.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc---------cc---ccCHHHHHHHHHHHHhC-CcEEEcCceEEE
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---------QR---LFTPSLAQRYEQLYQQN-GVKFVKGASIKN  200 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l---------~~---~~~~~~~~~~~~~l~~~-gv~i~~~~~v~~  200 (414)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++.+...         +.   ....++...+.+.+++. +++++.+ +|+.
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~   81 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERYPTIHWVEG-RVTD   81 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCCCSSTTCTTCCHHHHHHHHHHHHTTCTTEEEEES-CEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhhcCCcCCCCCCHHHHHHHHHHHHHhcCCeEEEEe-EEEE
Confidence            479999999999999999999999999999753211         00   01135666777777776 7888765 8888


Q ss_pred             EEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCC
Q 014997          201 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  235 (414)
Q Consensus       201 i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~  235 (414)
                      +...+++  ..+.+.+|+++.+|.+|+|+|..|..
T Consensus        82 i~~~~~~--~~v~~~~g~~~~~d~vviAtG~~~~~  114 (297)
T 3fbs_A           82 AKGSFGE--FIVEIDGGRRETAGRLILAMGVTDEL  114 (297)
T ss_dssp             EEEETTE--EEEEETTSCEEEEEEEEECCCCEEEC
T ss_pred             EEEcCCe--EEEEECCCCEEEcCEEEECCCCCCCC
Confidence            8765333  46788899899999999999998754

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=98.62  E-value=2.3e-07  Score=90.60  Aligned_cols=99  Identities=11%  Similarity=0.196  Sum_probs=77.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc--------------------cc---------------------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------------------RL---------------------  172 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~--------------------~~---------------------  172 (414)
                      .+|+|||+|+.|+.+|..|+++|.+|+++++.+.+..                    ..                     
T Consensus         5 ~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   84 (401)
T 2gqf_A            5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDFI   84 (401)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHHH
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHHHHH
Confidence            4799999999999999999999999999998764310                    00                     


Q ss_pred             ----------------------cCHHHHHHHHHHHHhCCcEEEcCceEEEEEecC---CCcEEEEEeCCCcEEecCEEEE
Q 014997          173 ----------------------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS---DGRVAAVKLEDGSTIDADTIVI  227 (414)
Q Consensus       173 ----------------------~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~---~~~~~~v~~~~g~~i~~D~vi~  227 (414)
                                            ....+.+.+.+.+++.||++++++.|+++..++   ++. ..|.+++| ++.||.||+
T Consensus        85 ~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~-~~v~~~~g-~i~ad~VVl  162 (401)
T 2gqf_A           85 SLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVR-FVLQVNST-QWQCKNLIV  162 (401)
T ss_dssp             HHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCC-EEEEETTE-EEEESEEEE
T ss_pred             HHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCe-EEEEECCC-EEECCEEEE
Confidence                                  123444567777788899999999999998541   233 35677776 799999999


Q ss_pred             ccCCcCC
Q 014997          228 GIGAKPT  234 (414)
Q Consensus       228 a~G~~p~  234 (414)
                      |+|..+.
T Consensus       163 AtG~~s~  169 (401)
T 2gqf_A          163 ATGGLSM  169 (401)
T ss_dssp             CCCCSSC
T ss_pred             CCCCccC
Confidence            9999874

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.61  E-value=2.1e-08  Score=99.02  Aligned_cols=96  Identities=23%  Similarity=0.335  Sum_probs=71.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhCC--CcEEEEeeCCccccccc---------C-HHHHHHHHHHHHhCCcEEEcCceEEEE
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQRLF---------T-PSLAQRYEQLYQQNGVKFVKGASIKNL  201 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l~~~~---------~-~~~~~~~~~~l~~~gv~i~~~~~v~~i  201 (414)
                      |+|+|||||+.|+.+|..|++++  .+||+|++++...-...         . +++...+.+.+++.||+++.+ +|++|
T Consensus         3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~~-~v~~I   81 (430)
T 3hyw_A            3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINE-KAESI   81 (430)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECS-CEEEE
T ss_pred             CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEEe-EEEEE
Confidence            68999999999999999999865  78999999875431111         1 011111234566789999976 68999


Q ss_pred             EecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997          202 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       202 ~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (414)
                      +.+  .+  .|.+++|+++++|.+|+|+|.++.
T Consensus        82 d~~--~~--~V~~~~g~~i~YD~LViAtG~~~~  110 (430)
T 3hyw_A           82 DPD--AN--TVTTQSGKKIEYDYLVIATGPKLV  110 (430)
T ss_dssp             ETT--TT--EEEETTCCEEECSEEEECCCCEEE
T ss_pred             ECC--CC--EEEECCCCEEECCEEEEeCCCCcc
Confidence            754  22  678999999999999999998753

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.60  E-value=2e-07  Score=94.65  Aligned_cols=102  Identities=18%  Similarity=0.207  Sum_probs=81.6

Q ss_pred             CeEEEECCChHHHHHHHHHH-hCCCcEEEEeeCCccccc--------------------cc----------------CHH
Q 014997          134 KKVVVVGGGYIGMEVAAAAV-GWKLDTTIIFPENHLLQR--------------------LF----------------TPS  176 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~-~~g~~Vtlv~~~~~~l~~--------------------~~----------------~~~  176 (414)
                      .+|+|||+|+.|+.+|..|+ +.|.+|+++++.+.+...                    .+                .++
T Consensus         9 ~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~e   88 (540)
T 3gwf_A            9 VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQPE   88 (540)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCCHHH
Confidence            47999999999999999999 999999999986533100                    00                235


Q ss_pred             HHHHHHHHHHhCCc--EEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCC--cCCC
Q 014997          177 LAQRYEQLYQQNGV--KFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA--KPTV  235 (414)
Q Consensus       177 ~~~~~~~~l~~~gv--~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~--~p~~  235 (414)
                      +.+.+.+..++.|+  +++++++|++++.++++....|.+.+|+++.||.||+|+|.  +|..
T Consensus        89 i~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~  151 (540)
T 3gwf_A           89 ILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINF  151 (540)
T ss_dssp             HHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBCC
T ss_pred             HHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCCC
Confidence            66777888888898  89999999999876555556788999999999999999994  5543

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.60  E-value=7e-08  Score=94.18  Aligned_cols=99  Identities=22%  Similarity=0.287  Sum_probs=72.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCC--CcEEEEeeCCcccccccCHHHH---------HHHHHHHHhCCcEEEcCceEEEE
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQRLFTPSLA---------QRYEQLYQQNGVKFVKGASIKNL  201 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l~~~~~~~~~---------~~~~~~l~~~gv~i~~~~~v~~i  201 (414)
                      +|+|+|||+|+.|+.+|..|++.+  .+|+||++++......+...+.         ..-.+.+.+.||+++.+ +|+.|
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~~~gv~~i~~-~v~~i   80 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLRAHGIQVVHD-SALGI   80 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHHHTTCEEECS-CEEEE
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHHHCCCEEEEe-EEEEE
Confidence            799999999999999999998765  5899999886532211111110         01123456789999876 68888


Q ss_pred             EecCCCcEEEEEeCCCcEEecCEEEEccCCcCCCh
Q 014997          202 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       202 ~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  236 (414)
                      +.+  .+  .+.+.+|+++++|.+|+|+|.+++..
T Consensus        81 d~~--~~--~v~~~~g~~i~yd~LviAtG~~~~~~  111 (401)
T 3vrd_B           81 DPD--KK--LVKTAGGAEFAYDRCVVAPGIDLLYD  111 (401)
T ss_dssp             ETT--TT--EEEETTSCEEECSEEEECCCEEECGG
T ss_pred             Ecc--Cc--EEEecccceeecceeeeccCCccccC
Confidence            753  22  57889999999999999999988754

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.59  E-value=2.9e-07  Score=86.34  Aligned_cols=98  Identities=16%  Similarity=0.320  Sum_probs=76.2

Q ss_pred             eEEEECCChHHHHHHHHHHhCCC-cEEEEeeCCc---c--------ccc---cc-CHHHHHHHHHHHHhCCcEEEcCceE
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENH---L--------LQR---LF-TPSLAQRYEQLYQQNGVKFVKGASI  198 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~---~--------l~~---~~-~~~~~~~~~~~l~~~gv~i~~~~~v  198 (414)
                      +|+|||+|+.|+.+|..|++.|. +|+++++...   .        .+.   .+ ...+.+.+.+.+++.|++++. .++
T Consensus         3 dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~-~~v   81 (311)
T 2q0l_A            3 DCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEM-TAV   81 (311)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSSEEEECSSSTTCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHHTTSCEEEC-SCE
T ss_pred             eEEEECccHHHHHHHHHHHHCCCCcEEEEcCCCCCcccccccccccCCCCcccCCHHHHHHHHHHHHHHcCCEEEE-EEE
Confidence            68999999999999999999999 9999998521   0        111   11 245667777888889999998 788


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCC
Q 014997          199 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  235 (414)
Q Consensus       199 ~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~  235 (414)
                      ..+...++ . ..+.+.+|+++.+|.+|+|+|..|..
T Consensus        82 ~~i~~~~~-~-~~v~~~~g~~~~~~~vv~AtG~~~~~  116 (311)
T 2q0l_A           82 QRVSKKDS-H-FVILAEDGKTFEAKSVIIATGGSPKR  116 (311)
T ss_dssp             EEEEEETT-E-EEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             EEEEEcCC-E-EEEEEcCCCEEECCEEEECCCCCCCC
Confidence            88875432 2 35667888899999999999987754

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.56  E-value=4.2e-07  Score=85.15  Aligned_cols=100  Identities=10%  Similarity=0.143  Sum_probs=70.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc---cc---c------cccCHHHHHHHHHHHHhCC-cEEEcCceEEE
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH---LL---Q------RLFTPSLAQRYEQLYQQNG-VKFVKGASIKN  200 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~---~l---~------~~~~~~~~~~~~~~l~~~g-v~i~~~~~v~~  200 (414)
                      -.|+|||+|+.|+.+|..|+++|.+|+++++...   +.   +      ...++++.+...+.+.+.+ +.++.. .+..
T Consensus         7 yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~   85 (304)
T 4fk1_A            7 IDCAVIGAGPAGLNASLVLGRARKQIALFDNNTNRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYYEK-TVVM   85 (304)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCGGGGSSCBCCSTTCTTBCHHHHHHHHHHHHTTSTTEEEEEC-CEEE
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCeeeeecCCccCCCCCCHHHHHHHHHHHHHhcCCEEEEee-EEEE
Confidence            3699999999999999999999999999997531   10   0      0112345555555555554 555544 4555


Q ss_pred             EEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCC
Q 014997          201 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  235 (414)
Q Consensus       201 i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~  235 (414)
                      +...+++. ..+.+.+|+++.+|.||+|||.+|..
T Consensus        86 ~~~~~~~~-~~v~~~~g~~~~a~~liiATGs~p~~  119 (304)
T 4fk1_A           86 ITKQSTGL-FEIVTKDHTKYLAERVLLATGMQEEF  119 (304)
T ss_dssp             EEECTTSC-EEEEETTCCEEEEEEEEECCCCEEEC
T ss_pred             eeecCCCc-EEEEECCCCEEEeCEEEEccCCcccc
Confidence            55443433 46788999999999999999998753

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.54  E-value=6.9e-07  Score=85.78  Aligned_cols=98  Identities=16%  Similarity=0.266  Sum_probs=74.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCC-cEEEEeeCC------------ccccc----------------------------c
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPEN------------HLLQR----------------------------L  172 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~~------------~~l~~----------------------------~  172 (414)
                      .+|+|||+|+.|+.+|..|++.|. +|+++++.+            +++..                            .
T Consensus         5 ~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   84 (369)
T 3d1c_A            5 HKVAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFNEEH   84 (369)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSTTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHHCCSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCCCCCccccCcccccccCcchhcccCCchhhhhccccccccccccccC
Confidence            479999999999999999999999 999999875            00000                            0


Q ss_pred             cC-HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997          173 FT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       173 ~~-~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (414)
                      .. ..+...+.+.+++.|++++.++.|.++...+++  ..|.+.++ ++.+|.||+|+|..+.
T Consensus        85 ~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g-~~~~d~vVlAtG~~~~  144 (369)
T 3d1c_A           85 ISGETYAEYLQVVANHYELNIFENTVVTNISADDAY--YTIATTTE-TYHADYIFVATGDYNF  144 (369)
T ss_dssp             CBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSS--EEEEESSC-CEEEEEEEECCCSTTS
T ss_pred             CCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCe--EEEEeCCC-EEEeCEEEECCCCCCc
Confidence            01 235556677778899999999999999865333  24667776 5999999999998754

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.54  E-value=3.9e-07  Score=86.07  Aligned_cols=99  Identities=22%  Similarity=0.255  Sum_probs=76.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc------------cccc----cCHHHHHHHHHHHHhCCcEEEcCce
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL------------LQRL----FTPSLAQRYEQLYQQNGVKFVKGAS  197 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~------------l~~~----~~~~~~~~~~~~l~~~gv~i~~~~~  197 (414)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++.. +            .+..    ...++.+.+.+.+++.|++++. ..
T Consensus         9 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~   86 (325)
T 2q7v_A            9 YDVVIIGGGPAGLTAAIYTGRAQLSTLILEKGM-PGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQAEKFGAKVEM-DE   86 (325)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHHHHTTCEEEE-CC
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCcEEEEeCCC-CCcccccccccccCCCCCCCCCHHHHHHHHHHHHHHcCCEEEe-ee
Confidence            579999999999999999999999999999872 1            1110    1235666777888889999998 57


Q ss_pred             EEEEEec--CCCcEEEEEeCCCcEEecCEEEEccCCcCCC
Q 014997          198 IKNLEAG--SDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  235 (414)
Q Consensus       198 v~~i~~~--~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~  235 (414)
                      +..+...  ++. ...+.+.+|+++.+|.+|+|+|..|..
T Consensus        87 v~~i~~~~~~~~-~~~v~~~~g~~~~~~~vv~AtG~~~~~  125 (325)
T 2q7v_A           87 VQGVQHDATSHP-YPFTVRGYNGEYRAKAVILATGADPRK  125 (325)
T ss_dssp             EEEEEECTTSSS-CCEEEEESSCEEEEEEEEECCCEEECC
T ss_pred             EEEEEeccCCCc-eEEEEECCCCEEEeCEEEECcCCCcCC
Confidence            8888754  222 124566778899999999999998764

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.54  E-value=6.2e-08  Score=94.91  Aligned_cols=98  Identities=21%  Similarity=0.335  Sum_probs=73.9

Q ss_pred             CeEEEECCChHHHHHHHHHHh---CCCcEEEEeeCCcccccc----------cCHHHHHHHHHHHHhCCcEEEcCceEEE
Q 014997          134 KKVVVVGGGYIGMEVAAAAVG---WKLDTTIIFPENHLLQRL----------FTPSLAQRYEQLYQQNGVKFVKGASIKN  200 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~---~g~~Vtlv~~~~~~l~~~----------~~~~~~~~~~~~l~~~gv~i~~~~~v~~  200 (414)
                      ++|+|||||+.|+.+|..|++   .|.+|+++++++.+....          ...++...+.+.+++.|++++.+ +++.
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~   80 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQEG-TVEK   80 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGTCEEEEC-EEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCCeEEEEe-eEEE
Confidence            579999999999999999999   899999999887542110          11223334566677889999988 8888


Q ss_pred             EEecCCCcEEEEEeCCCc----EEecCEEEEccCCcCCCh
Q 014997          201 LEAGSDGRVAAVKLEDGS----TIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       201 i~~~~~~~~~~v~~~~g~----~i~~D~vi~a~G~~p~~~  236 (414)
                      ++.+  +.  .|.+.+++    ++.+|.+|+|+|.+|+..
T Consensus        81 i~~~--~~--~V~~~~g~~~~~~~~~d~lViAtG~~~~~~  116 (409)
T 3h8l_A           81 IDAK--SS--MVYYTKPDGSMAEEEYDYVIVGIGAHLATE  116 (409)
T ss_dssp             EETT--TT--EEEEECTTSCEEEEECSEEEECCCCEECGG
T ss_pred             EeCC--CC--EEEEccCCcccceeeCCEEEECCCCCcCcc
Confidence            8753  22  35555554    499999999999998754

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.53  E-value=2.9e-07  Score=87.14  Aligned_cols=98  Identities=16%  Similarity=0.232  Sum_probs=75.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEee----CCccc------------cc----ccCHHHHHHHHHHHHhCCcEEE
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP----ENHLL------------QR----LFTPSLAQRYEQLYQQNGVKFV  193 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~----~~~~l------------~~----~~~~~~~~~~~~~l~~~gv~i~  193 (414)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++    ...+.            +.    ....++...+.+.+++.|++++
T Consensus         9 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~   88 (333)
T 1vdc_A            9 TRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTIF   88 (333)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHHHHHHHHHHHCCCEEE
Confidence            5799999999999999999999999999998    21110            00    1124566777788888999999


Q ss_pred             cCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCC
Q 014997          194 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  235 (414)
Q Consensus       194 ~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~  235 (414)
                      .++ +..+....+.  ..+.+ +|+++.+|.+|+|+|..|..
T Consensus        89 ~~~-v~~i~~~~~~--~~v~~-~~~~~~~~~vv~A~G~~~~~  126 (333)
T 1vdc_A           89 TET-VTKVDFSSKP--FKLFT-DSKAILADAVILAIGAVAKR  126 (333)
T ss_dssp             CCC-CCEEECSSSS--EEEEC-SSEEEEEEEEEECCCEEECC
T ss_pred             EeE-EEEEEEcCCE--EEEEE-CCcEEEcCEEEECCCCCcCC
Confidence            987 8888754332  24555 77889999999999998764

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.53  E-value=9.5e-08  Score=92.28  Aligned_cols=99  Identities=23%  Similarity=0.313  Sum_probs=72.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc----------cccC-HHHHHHHHHHHHhCCcEEEcCceEEE
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------RLFT-PSLAQRYEQLYQQNGVKFVKGASIKN  200 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~----------~~~~-~~~~~~~~~~l~~~gv~i~~~~~v~~  200 (414)
                      .+.+++|||+|+.|+.+|..|+++| +|+++++.+.+..          ...+ +++.....+.+++.||+++.++.++.
T Consensus         7 ~~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g~~v~~   85 (367)
T 1xhc_A            7 HGSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKL   85 (367)
T ss_dssp             --CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEE
T ss_pred             CCCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCccccchhHHHHhCCCCHHHhccCCHHHHHhCCcEEEECCEEEE
Confidence            5789999999999999999999999 9999998864311          0011 11111234556778999999999999


Q ss_pred             EEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCCh
Q 014997          201 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       201 i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  236 (414)
                      ++..  ..  .|. .+|+++.+|.+|+|||.+|...
T Consensus        86 id~~--~~--~V~-~~g~~~~~d~lViATGs~p~~p  116 (367)
T 1xhc_A           86 IDRG--RK--VVI-TEKGEVPYDTLVLATGARAREP  116 (367)
T ss_dssp             EETT--TT--EEE-ESSCEEECSEEEECCCEEECCC
T ss_pred             EECC--CC--EEE-ECCcEEECCEEEECCCCCCCCC
Confidence            8753  22  344 5778899999999999988743

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=98.53  E-value=7.7e-07  Score=88.21  Aligned_cols=99  Identities=25%  Similarity=0.430  Sum_probs=79.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc-------------------c-----------------------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------------------R-----------------------  171 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-------------------~-----------------------  171 (414)
                      .+|+|||||..|+.+|..|++.|.+|+|+++.+.+..                   .                       
T Consensus        27 ~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (447)
T 2i0z_A           27 YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNED  106 (447)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHHH
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhcCHHH
Confidence            5799999999999999999999999999998753210                   0                       


Q ss_pred             -------------------cc-----CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEE
Q 014997          172 -------------------LF-----TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI  227 (414)
Q Consensus       172 -------------------~~-----~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~  227 (414)
                                         .+     ...+.+.+.+.+++.||+++++++|+++..+ ++.+..|.+.+|+++.||.||+
T Consensus       107 ~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~-~~~v~~V~~~~G~~i~Ad~VVl  185 (447)
T 2i0z_A          107 IITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYE-NGQTKAVILQTGEVLETNHVVI  185 (447)
T ss_dssp             HHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTCCEEECSCEEE
T ss_pred             HHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEec-CCcEEEEEECCCCEEECCEEEE
Confidence                               00     0233445666778899999999999999854 5565678888888899999999


Q ss_pred             ccCCcC
Q 014997          228 GIGAKP  233 (414)
Q Consensus       228 a~G~~p  233 (414)
                      |+|..+
T Consensus       186 AtGg~s  191 (447)
T 2i0z_A          186 AVGGKS  191 (447)
T ss_dssp             CCCCSS
T ss_pred             CCCCCc
Confidence            999876

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.53  E-value=1.8e-07  Score=91.44  Aligned_cols=98  Identities=24%  Similarity=0.464  Sum_probs=74.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCC--cEEEEeeCCccc------cc-cc-----CHHHHHHHHHHHHhCCcEEEcCceE
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLL------QR-LF-----TPSLAQRYEQLYQQNGVKFVKGASI  198 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~--~Vtlv~~~~~~l------~~-~~-----~~~~~~~~~~~l~~~gv~i~~~~~v  198 (414)
                      .++|+|||+|+.|+.+|..|++.|.  +|+++++.+.+.      .. .+     ...+.....+.+++.|++++. .++
T Consensus         1 ~k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~-~~v   79 (404)
T 3fg2_P            1 NDTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFRPEKFFQDQAIELIS-DRM   79 (404)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGGGGTGGGGSCCCTTSSBSSCHHHHHHTTEEEEC-CCE
T ss_pred             CCCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCccCCHHHHCCCCCHHHccCCCHHHHHhCCCEEEE-EEE
Confidence            3689999999999999999999998  899999876321      10 00     111112234567789999999 899


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCC
Q 014997          199 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  235 (414)
Q Consensus       199 ~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~  235 (414)
                      +.++..  .+  .+.+.+|+++.+|.+|+|+|.+|..
T Consensus        80 ~~id~~--~~--~v~~~~g~~~~~d~lvlAtG~~p~~  112 (404)
T 3fg2_P           80 VSIDRE--GR--KLLLASGTAIEYGHLVLATGARNRM  112 (404)
T ss_dssp             EEEETT--TT--EEEESSSCEEECSEEEECCCEEECC
T ss_pred             EEEECC--CC--EEEECCCCEEECCEEEEeeCCCccC
Confidence            999754  22  5778899999999999999998764

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.51  E-value=3.6e-07  Score=90.15  Aligned_cols=101  Identities=24%  Similarity=0.433  Sum_probs=75.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCC--cEEEEeeCCcccc------c-ccC-----HHHHHHHHHHHHhCCcEEEcCceE
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLLQ------R-LFT-----PSLAQRYEQLYQQNGVKFVKGASI  198 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~--~Vtlv~~~~~~l~------~-~~~-----~~~~~~~~~~l~~~gv~i~~~~~v  198 (414)
                      ..+|+|||+|+.|+.+|..|+++|.  +|+++++.+.+..      . .+.     ..+.....+.+++.||+++.++.|
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v   83 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQV   83 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCCE
T ss_pred             CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCCCCcHHHhCCCCChHHhcccCHHHHHhCCCEEEeCCEE
Confidence            4689999999999999999999997  7999998754210      0 000     011111235677889999999999


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChh
Q 014997          199 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP  237 (414)
Q Consensus       199 ~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~  237 (414)
                      +.+...  +.  .|.+.+|+++.+|.+|+|+|.+|....
T Consensus        84 ~~i~~~--~~--~v~~~~g~~~~~d~lviAtG~~p~~~~  118 (431)
T 1q1r_A           84 TAINRD--RQ--QVILSDGRALDYDRLVLATGGRPRPLP  118 (431)
T ss_dssp             EEEETT--TT--EEEETTSCEEECSEEEECCCEEECCCG
T ss_pred             EEEECC--CC--EEEECCCCEEECCEEEEcCCCCccCCC
Confidence            999753  22  577788889999999999999987543

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.51  E-value=1.7e-06  Score=83.43  Aligned_cols=98  Identities=20%  Similarity=0.296  Sum_probs=71.2

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc-------------------------------------------
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------------------------------------------  171 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-------------------------------------------  171 (414)
                      .|+|||||+.|+-+|..|++.|.+|+|+++.+.+-..                                           
T Consensus         6 DViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (397)
T 3oz2_A            6 DVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIANEVKGARIYGPSEKRPII   85 (397)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEEEEESEEEEECTTCSSCEE
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCceecccCHHHHHHcCCCchhhhhhcccceEEEEeCCCceEee
Confidence            5999999999999999999999999999986432000                                           


Q ss_pred             ------------ccC-HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEe-CCC--cEEecCEEEEccCCcC
Q 014997          172 ------------LFT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL-EDG--STIDADTIVIGIGAKP  233 (414)
Q Consensus       172 ------------~~~-~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~-~~g--~~i~~D~vi~a~G~~p  233 (414)
                                  .++ ..+...+.+..++.|++++.++.++.+..+ ++.+..+.. .++  .++.+|.||-|.|...
T Consensus        86 ~~~~~~~~~~~~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~~-~~~~~~v~~~~~~~~~~~~a~~vIgAdG~~S  162 (397)
T 3oz2_A           86 LQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKE-NGKVAGAKIRHNNEIVDVRAKMVIAADGFES  162 (397)
T ss_dssp             EECSSSSCCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEE-TTEEEEEEEEETTEEEEEEEEEEEECCCTTC
T ss_pred             ccccccCCceeEEEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeeec-cceeeeeeecccccceEEEEeEEEeCCcccc
Confidence                        001 124455666777889999999999988754 444444333 233  3689999999999653

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.51  E-value=6e-07  Score=89.46  Aligned_cols=103  Identities=17%  Similarity=0.236  Sum_probs=76.4

Q ss_pred             CeEEEECCChHHHHHHHHHHh---CCCc---EEEEeeCCccccc------------------------------------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVG---WKLD---TTIIFPENHLLQR------------------------------------  171 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~---~g~~---Vtlv~~~~~~l~~------------------------------------  171 (414)
                      ++|+|||+|+.|+.+|..|++   .|.+   |+++++.+.+...                                    
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~   82 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFA   82 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBT
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccC
Confidence            589999999999999999999   9999   9999987543100                                    


Q ss_pred             -------------cc--CHHHHHHHHHHHHhCCcE--EEcCceEEEEEecCCCcEEEEEeCC---C--cEEecCEEEEcc
Q 014997          172 -------------LF--TPSLAQRYEQLYQQNGVK--FVKGASIKNLEAGSDGRVAAVKLED---G--STIDADTIVIGI  229 (414)
Q Consensus       172 -------------~~--~~~~~~~~~~~l~~~gv~--i~~~~~v~~i~~~~~~~~~~v~~~~---g--~~i~~D~vi~a~  229 (414)
                                   .+  ...+.+.+.+.+++.|++  +++++.|+.++..+++....|.+.+   |  .++.+|.||+|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAt  162 (464)
T 2xve_A           83 DYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCT  162 (464)
T ss_dssp             TBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECC
T ss_pred             CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEECC
Confidence                         00  034556677777778998  9999999999865442223455543   4  578999999999


Q ss_pred             C--CcCCCh
Q 014997          230 G--AKPTVS  236 (414)
Q Consensus       230 G--~~p~~~  236 (414)
                      |  ..|+..
T Consensus       163 G~~s~p~~p  171 (464)
T 2xve_A          163 GHFSTPYVP  171 (464)
T ss_dssp             CSSSSBCCC
T ss_pred             CCCCCCccC
Confidence            9  677643

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.51  E-value=2.7e-07  Score=93.78  Aligned_cols=103  Identities=14%  Similarity=0.157  Sum_probs=80.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc-------------------------c---------cc--cCHH
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------------------------Q---------RL--FTPS  176 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------------------------~---------~~--~~~~  176 (414)
                      ..+|+|||+|+.|+.+|..|++.|.+|+++++++.+.                         +         ..  -.++
T Consensus         9 ~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~~e   88 (545)
T 3uox_A            9 ALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQPE   88 (545)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBHHH
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCHHH
Confidence            3579999999999999999999999999999975431                         0         00  1246


Q ss_pred             HHHHHHHHHHhCCc--EEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccC--CcCCC
Q 014997          177 LAQRYEQLYQQNGV--KFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG--AKPTV  235 (414)
Q Consensus       177 ~~~~~~~~l~~~gv--~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G--~~p~~  235 (414)
                      +...+.+..++.|+  +++++++|++++.+++.....|.+.+|+++.||.||+|+|  .+|..
T Consensus        89 i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~  151 (545)
T 3uox_A           89 MLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRM  151 (545)
T ss_dssp             HHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC---
T ss_pred             HHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcC
Confidence            67777777788787  7899999999976555445578889999999999999999  55543

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.51  E-value=5.2e-07  Score=88.39  Aligned_cols=100  Identities=17%  Similarity=0.212  Sum_probs=78.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc--------ccc----------------------------------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL--------LQR----------------------------------  171 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~--------l~~----------------------------------  171 (414)
                      .+|+|||||+.|+-+|..|++.|.+|+++++.+..        .+.                                  
T Consensus         6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   85 (421)
T 3nix_A            6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGESLLPRCMEHLDEAGFLDAVKAQGFQQKFGAKFVRGKEIA   85 (421)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCGGGHHHHHHTTCHHHHHHTTCEEECEEEEEETTEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccCcccHhHHHHHHHcCChHHHHHcCCcccCCcEEEeCCeeE
Confidence            47999999999999999999999999999986411        000                                  


Q ss_pred             ----------------ccC-HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCc--EEecCEEEEccCCc
Q 014997          172 ----------------LFT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAK  232 (414)
Q Consensus       172 ----------------~~~-~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~  232 (414)
                                      .++ ..+...+.+.+++.|++++.+++|+++..++++....+.+.+|+  ++.+|.||.|+|..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~  165 (421)
T 3nix_A           86 DFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYG  165 (421)
T ss_dssp             EEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCGGG
T ss_pred             EEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCCCc
Confidence                            000 13445666777778999999999999987655555567778887  79999999999987


Q ss_pred             C
Q 014997          233 P  233 (414)
Q Consensus       233 p  233 (414)
                      .
T Consensus       166 s  166 (421)
T 3nix_A          166 R  166 (421)
T ss_dssp             C
T ss_pred             h
Confidence            5

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.50  E-value=6.2e-07  Score=87.87  Aligned_cols=99  Identities=24%  Similarity=0.427  Sum_probs=75.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCc--EEEEeeCCccccc--ccCHHHH---------HHHHHHHHhCCcEEEcCceEEE
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLD--TTIIFPENHLLQR--LFTPSLA---------QRYEQLYQQNGVKFVKGASIKN  200 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~--Vtlv~~~~~~l~~--~~~~~~~---------~~~~~~l~~~gv~i~~~~~v~~  200 (414)
                      ++|+|||+|+.|+.+|..|++.|.+  |+++++.+.+.-.  .+.+.+.         ....+.+++.||+++.+++++.
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   82 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPILAEADWYGEARIDMLTGPEVTA   82 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSGGGGTHHHHTSSSSCCBSSCTTHHHHTTCEEEESCCEEE
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCccccHHHhCCCCCHHHhcCCHHHHHHCCCEEEeCCEEEE
Confidence            5899999999999999999999977  9999988653210  0111110         1123456788999999999999


Q ss_pred             EEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCCh
Q 014997          201 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       201 i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  236 (414)
                      ++..  .+  .+.+.+|+++.+|.+|+|+|.+|...
T Consensus        83 id~~--~~--~v~~~~g~~~~~d~lvlAtG~~p~~~  114 (410)
T 3ef6_A           83 LDVQ--TR--TISLDDGTTLSADAIVIATGSRARTM  114 (410)
T ss_dssp             EETT--TT--EEEETTSCEEECSEEEECCCEEECCC
T ss_pred             EECC--CC--EEEECCCCEEECCEEEEccCCcccCC
Confidence            9754  22  67788999999999999999987643

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.49  E-value=1e-06  Score=85.81  Aligned_cols=100  Identities=16%  Similarity=0.140  Sum_probs=78.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc-------------------------------------------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------------------------------------------  170 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------------------  170 (414)
                      .+|+|||+|+.|+.+|..|++.|.+|+|+++.+.+..                                           
T Consensus         7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~g~~   86 (399)
T 2x3n_A            7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHDGEL   86 (399)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEETTEE
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeCCCCE
Confidence            4799999999999999999999999999998653300                                           


Q ss_pred             --c-------------ccC-HHHHHHHHHHHHhC-CcEEEcCceEEEEEecCCCcEE-EEEeCCCcEEecCEEEEccCCc
Q 014997          171 --R-------------LFT-PSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVA-AVKLEDGSTIDADTIVIGIGAK  232 (414)
Q Consensus       171 --~-------------~~~-~~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~~-~v~~~~g~~i~~D~vi~a~G~~  232 (414)
                        .             .++ ..+.+.+.+.+++. |++++.+++|++++.++++ +. .+.+.+|+++.+|.||.|.|..
T Consensus        87 ~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~-v~g~v~~~~g~~~~ad~vV~AdG~~  165 (399)
T 2x3n_A           87 LRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERH-AIDQVRLNDGRVLRPRVVVGADGIA  165 (399)
T ss_dssp             EEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTS-CEEEEEETTSCEEEEEEEEECCCTT
T ss_pred             EEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCc-eEEEEEECCCCEEECCEEEECCCCC
Confidence              0             001 24455666677777 9999999999999875443 32 5778899899999999999987


Q ss_pred             CC
Q 014997          233 PT  234 (414)
Q Consensus       233 p~  234 (414)
                      ..
T Consensus       166 s~  167 (399)
T 2x3n_A          166 SY  167 (399)
T ss_dssp             CH
T ss_pred             hH
Confidence            64

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=98.49  E-value=4.2e-07  Score=92.94  Aligned_cols=142  Identities=15%  Similarity=0.172  Sum_probs=93.6

Q ss_pred             EEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhc----CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc
Q 014997           93 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE----KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  168 (414)
Q Consensus        93 viAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~----~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  168 (414)
                      ..|+.++......+|....++....+...+...+...+.    ..-.|+|||+|..|+.+|..|++.|.+|+|+++.+.+
T Consensus        77 ~~c~~ch~~~~~~~p~~~~~~~~~w~~~~~~~~i~~~i~~~~~~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~  156 (566)
T 1qo8_A           77 FYCNECHSFDIKPMPFSDAKKKKSWDDGWDQDKIQKAIAAGPSETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFS  156 (566)
T ss_dssp             CGGGGTCCCCCCCCTTTTSCCCCCSCCCCCHHHHHHHHHTCCSEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSS
T ss_pred             chhhhhcCCCcCCCCCCCCCCCcccccccccHHHHHhhccCCCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            457777665413344444544444433222222212222    2347999999999999999999999999999987532


Q ss_pred             ccc-----------------------------------------------------------------------------
Q 014997          169 LQR-----------------------------------------------------------------------------  171 (414)
Q Consensus       169 l~~-----------------------------------------------------------------------------  171 (414)
                      ...                                                                             
T Consensus       157 gg~s~~s~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~  236 (566)
T 1qo8_A          157 GGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQNDIKLVTILAEQSADGVQWLESLGANLDDLKRSGGARV  236 (566)
T ss_dssp             CTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSS
T ss_pred             CCcccccCceeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHhccHHHHHHHHhcCCccccccccCCCCC
Confidence            100                                                                             


Q ss_pred             --c--------cCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeC--CCc--EEecCEEEEccCCcCC
Q 014997          172 --L--------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--DGS--TIDADTIVIGIGAKPT  234 (414)
Q Consensus       172 --~--------~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~--~g~--~i~~D~vi~a~G~~p~  234 (414)
                        .        .+..+...+.+.+++.||++++++.|+++..++++++..|.+.  +|+  .+.+|.||+|+|....
T Consensus       237 ~r~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s~  313 (566)
T 1qo8_A          237 DRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGM  313 (566)
T ss_dssp             CCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTT
T ss_pred             CceeecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEECCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCccc
Confidence              0        0112335566677888999999999999986543776666654  675  6899999999997553

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.48  E-value=7.5e-07  Score=90.07  Aligned_cols=103  Identities=21%  Similarity=0.277  Sum_probs=80.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC--ccc-----------ccccCHHHHHHHHHHHHhCCcEEEcCceEE
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN--HLL-----------QRLFTPSLAQRYEQLYQQNGVKFVKGASIK  199 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~--~~l-----------~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~  199 (414)
                      ..+|+|||||+.|+.+|..|++.|.+|+++++..  ...           +....+++...+.+.+++.|++++.++++.
T Consensus       212 ~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~v~~~~~v~  291 (521)
T 1hyu_A          212 AYDVLIVGSGPAGAAAAVYSARKGIRTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVIDSQSAS  291 (521)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSTTGGGTTCSCBCCBTTBSSBCHHHHHHHHHHHHHTSCEEEECSCCEE
T ss_pred             cccEEEECCcHHHHHHHHHHHhCCCeEEEEECCCCCcccccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEcCCEEE
Confidence            4579999999999999999999999999997531  110           001134677778888889999999999999


Q ss_pred             EEEecCC-CcEEEEEeCCCcEEecCEEEEccCCcCCC
Q 014997          200 NLEAGSD-GRVAAVKLEDGSTIDADTIVIGIGAKPTV  235 (414)
Q Consensus       200 ~i~~~~~-~~~~~v~~~~g~~i~~D~vi~a~G~~p~~  235 (414)
                      .+....+ +....|.+.+|+++.+|.+|+|+|.+|..
T Consensus       292 ~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~~  328 (521)
T 1hyu_A          292 KLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRN  328 (521)
T ss_dssp             EEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             EEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcCC
Confidence            9974321 22346788899899999999999987753

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.45  E-value=4.2e-07  Score=89.18  Aligned_cols=100  Identities=25%  Similarity=0.377  Sum_probs=76.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCc--EEEEeeCCccc------c-ccc-----CHHHHHHHHHHHHhCCcEEEcCceE
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLD--TTIIFPENHLL------Q-RLF-----TPSLAQRYEQLYQQNGVKFVKGASI  198 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~--Vtlv~~~~~~l------~-~~~-----~~~~~~~~~~~l~~~gv~i~~~~~v  198 (414)
                      .++|+|||+|+.|+.+|..|++.|.+  |+++++.+.+.      . ..+     ...+.....+.+++.||+++.++.+
T Consensus         9 ~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v   88 (415)
T 3lxd_A            9 RADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAREKTFERICIRPAQFWEDKAVEMKLGAEV   88 (415)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSGGGGTTTTTTSSCSGGGBSSCHHHHHHTTEEEEETCCE
T ss_pred             CCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcccCCHHHHcCCCCHHHhccCCHHHHHHCCcEEEeCCEE
Confidence            46899999999999999999999977  99999876431      1 011     1122222346678899999999999


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCCh
Q 014997          199 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       199 ~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  236 (414)
                      ..+...  .+  .+.+.+|+.+.+|.+|+|+|.+|...
T Consensus        89 ~~id~~--~~--~v~~~~g~~~~~d~lvlAtG~~~~~~  122 (415)
T 3lxd_A           89 VSLDPA--AH--TVKLGDGSAIEYGKLIWATGGDPRRL  122 (415)
T ss_dssp             EEEETT--TT--EEEETTSCEEEEEEEEECCCEECCCC
T ss_pred             EEEECC--CC--EEEECCCCEEEeeEEEEccCCccCCC
Confidence            999753  22  57788999999999999999988643

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.45  E-value=8.7e-07  Score=83.28  Aligned_cols=98  Identities=19%  Similarity=0.283  Sum_probs=75.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc---c--------ccc----ccCHHHHHHHHHHHHhCCcEEEcCceE
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH---L--------LQR----LFTPSLAQRYEQLYQQNGVKFVKGASI  198 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~---~--------l~~----~~~~~~~~~~~~~l~~~gv~i~~~~~v  198 (414)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++...   +        .+.    ...+++.+.+.+.+++.|++++.++ +
T Consensus         6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v   84 (320)
T 1trb_A            6 SKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDH-I   84 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECCC-E
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEccCCCCceEecchhhhhCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEee-e
Confidence            5799999999999999999999999999996410   0        011    1124666777788889999999986 8


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCC
Q 014997          199 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  235 (414)
Q Consensus       199 ~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~  235 (414)
                      ..++...+ .+ .+ +.++.++.+|.+|+|+|..|..
T Consensus        85 ~~i~~~~~-~~-~v-~~~~~~~~~~~lv~AtG~~~~~  118 (320)
T 1trb_A           85 NKVDLQNR-PF-RL-NGDNGEYTCDALIIATGASARY  118 (320)
T ss_dssp             EEEECSSS-SE-EE-EESSCEEEEEEEEECCCEEECC
T ss_pred             eEEEecCC-EE-EE-EeCCCEEEcCEEEECCCCCcCC
Confidence            88875432 22 33 5677889999999999998764

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.45  E-value=9.1e-07  Score=83.99  Aligned_cols=100  Identities=18%  Similarity=0.259  Sum_probs=76.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC---cc--------ccc----ccCHHHHHHHHHHHHhCCcEEEcCc
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN---HL--------LQR----LFTPSLAQRYEQLYQQNGVKFVKGA  196 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~---~~--------l~~----~~~~~~~~~~~~~l~~~gv~i~~~~  196 (414)
                      ...+|+|||+|+.|+.+|..|++.|.+|+++++..   .+        .+.    ...+++...+.+.+++.|++++.++
T Consensus        13 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~   92 (335)
T 2a87_A           13 PVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTSFGGALMTTTDVENYPGFRNGITGPELMDEMREQALRFGADLRMED   92 (335)
T ss_dssp             CCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCSSCSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHHHHHHTTCEEECCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCceeccchhhhcCCCCCCCCHHHHHHHHHHHHHHcCCEEEEee
Confidence            34689999999999999999999999999998641   00        011    1124666777778888999999987


Q ss_pred             eEEEEEecCCCcEEEE-EeCCCcEEecCEEEEccCCcCCC
Q 014997          197 SIKNLEAGSDGRVAAV-KLEDGSTIDADTIVIGIGAKPTV  235 (414)
Q Consensus       197 ~v~~i~~~~~~~~~~v-~~~~g~~i~~D~vi~a~G~~p~~  235 (414)
                       +..++. .+..  .+ .+.+|+++.+|.+|+|+|..|..
T Consensus        93 -v~~i~~-~~~~--~v~~~~~g~~~~~d~lviAtG~~~~~  128 (335)
T 2a87_A           93 -VESVSL-HGPL--KSVVTADGQTHRARAVILAMGAAARY  128 (335)
T ss_dssp             -EEEEEC-SSSS--EEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             -EEEEEe-CCcE--EEEEeCCCCEEEeCEEEECCCCCccC
Confidence             888875 2222  45 67788899999999999998764

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=98.43  E-value=1.4e-06  Score=83.29  Aligned_cols=64  Identities=13%  Similarity=0.257  Sum_probs=48.7

Q ss_pred             HHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCC--cEEecCEEEEccCCcCCChhhhhc-CC
Q 014997          178 AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERV-GL  243 (414)
Q Consensus       178 ~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~~l~~~-gl  243 (414)
                      ...+.+.+++.|++++++++|+++..++++.+ .|.+.+|  .++.||.||+|+|.... .+++.+ |+
T Consensus       153 ~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~-~v~~~~g~~~~~~a~~VV~A~G~~s~-~l~~~~~g~  219 (369)
T 3dme_A          153 MLAYQGDAESDGAQLVFHTPLIAGRVRPEGGF-ELDFGGAEPMTLSCRVLINAAGLHAP-GLARRIEGI  219 (369)
T ss_dssp             HHHHHHHHHHTTCEEECSCCEEEEEECTTSSE-EEEECTTSCEEEEEEEEEECCGGGHH-HHHHTEETS
T ss_pred             HHHHHHHHHHCCCEEECCCEEEEEEEcCCceE-EEEECCCceeEEEeCEEEECCCcchH-HHHHHhcCC
Confidence            34456667889999999999999987655433 4778887  48999999999998753 556655 54

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.43  E-value=7.6e-07  Score=88.22  Aligned_cols=102  Identities=18%  Similarity=0.176  Sum_probs=75.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCC--cEEEEeeCCcccc----c---------------------------------c
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLLQ----R---------------------------------L  172 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~--~Vtlv~~~~~~l~----~---------------------------------~  172 (414)
                      ...+|+|||+|+.|+.+|..|++.|.  +|+++++.+.+..    .                                 .
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~~   84 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPL   84 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCC
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCch
Confidence            35789999999999999999999999  9999998743210    0                                 0


Q ss_pred             --------------c--------------CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCC---Cc---
Q 014997          173 --------------F--------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---GS---  218 (414)
Q Consensus       173 --------------~--------------~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~---g~---  218 (414)
                                    +              ...+.+.+.+..++.++.++++++|+.++..+++  ..|.+.+   |+   
T Consensus        85 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~--~~V~~~~~~~G~~~~  162 (447)
T 2gv8_A           85 YRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGS--WVVTYKGTKAGSPIS  162 (447)
T ss_dssp             CTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTE--EEEEEEESSTTCCEE
T ss_pred             hhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCe--EEEEEeecCCCCeeE
Confidence                          0              0134556666666667889999999999765332  2445544   66   


Q ss_pred             EEecCEEEEccCC--cCCC
Q 014997          219 TIDADTIVIGIGA--KPTV  235 (414)
Q Consensus       219 ~i~~D~vi~a~G~--~p~~  235 (414)
                      ++.+|.||+|+|.  .|+.
T Consensus       163 ~~~~d~VVvAtG~~s~p~~  181 (447)
T 2gv8_A          163 KDIFDAVSICNGHYEVPYI  181 (447)
T ss_dssp             EEEESEEEECCCSSSSBCB
T ss_pred             EEEeCEEEECCCCCCCCCC
Confidence            7999999999998  6654

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.42  E-value=1e-06  Score=85.74  Aligned_cols=100  Identities=17%  Similarity=0.275  Sum_probs=74.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc-----ccCHHHHH----------------------------
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----LFTPSLAQ----------------------------  179 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----~~~~~~~~----------------------------  179 (414)
                      ..+|+|||||+.|+.+|..|++.|.+|+|+++.+.+...     .+.+...+                            
T Consensus         5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~   84 (397)
T 2vou_A            5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTGE   84 (397)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEEEecCCCC
Confidence            468999999999999999999999999999987653111     01221111                            


Q ss_pred             ---------------HHHHHHHh--CCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997          180 ---------------RYEQLYQQ--NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       180 ---------------~~~~~l~~--~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (414)
                                     .+.+.|.+  .|++++.+++|++++.++++ + .+.+.+|+++.+|.||.|.|....
T Consensus        85 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v-~v~~~~g~~~~ad~vV~AdG~~S~  154 (397)
T 2vou_A           85 RVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSET-V-QMRFSDGTKAEANWVIGADGGASV  154 (397)
T ss_dssp             EEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSC-E-EEEETTSCEEEESEEEECCCTTCH
T ss_pred             ccccccCcccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCE-E-EEEECCCCEEECCEEEECCCcchh
Confidence                           12222222  37899999999999876444 3 578899999999999999998764

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.42  E-value=1.3e-06  Score=82.20  Aligned_cols=99  Identities=15%  Similarity=0.178  Sum_probs=74.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc---c--------ccc---ccCHHHHHHHHHHHHhCCcEEEcCceE
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH---L--------LQR---LFTPSLAQRYEQLYQQNGVKFVKGASI  198 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~---~--------l~~---~~~~~~~~~~~~~l~~~gv~i~~~~~v  198 (414)
                      ..+|+|||+|+.|+.+|..|++.|.+|+++++...   .        .+.   ....++...+.+.+++.|++++. ..+
T Consensus        16 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v   94 (319)
T 3cty_A           16 DFDVVIVGAGAAGFSAAVYAARSGFSVAILDKAVAGGLTAEAPLVENYLGFKSIVGSELAKLFADHAANYAKIREG-VEV   94 (319)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSTTGGGGGCSCBCCBTTBSSBCHHHHHHHHHHHHHTTSEEEET-CCE
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCccccccchhhhcCCCcccCHHHHHHHHHHHHHHcCCEEEE-eeE
Confidence            46899999999999999999999999999998421   0        111   11245666777788889999998 678


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCC
Q 014997          199 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  235 (414)
Q Consensus       199 ~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~  235 (414)
                      ..+....+ . ..+.+ ++.++.+|.+|+|+|..|..
T Consensus        95 ~~i~~~~~-~-~~v~~-~~~~~~~~~li~AtG~~~~~  128 (319)
T 3cty_A           95 RSIKKTQG-G-FDIET-NDDTYHAKYVIITTGTTHKH  128 (319)
T ss_dssp             EEEEEETT-E-EEEEE-SSSEEEEEEEEECCCEEECC
T ss_pred             EEEEEeCC-E-EEEEE-CCCEEEeCEEEECCCCCccc
Confidence            88875432 2 23555 56689999999999988763

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.41  E-value=1.2e-06  Score=82.16  Aligned_cols=99  Identities=14%  Similarity=0.164  Sum_probs=74.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc----c----c-----------c-cccCHHHHHHHHHHHHhCCcEEE
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH----L----L-----------Q-RLFTPSLAQRYEQLYQQNGVKFV  193 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~----~----l-----------~-~~~~~~~~~~~~~~l~~~gv~i~  193 (414)
                      ..|+|||+|+.|+.+|..|+++|.+|+++++...    +    .           + ...++++...+.+.+++.++++.
T Consensus         5 yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~~~~~~~~~~~   84 (314)
T 4a5l_A            5 HDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEKYGTTII   84 (314)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHHHHHHHhhcCcEEE
Confidence            4699999999999999999999999999997531    0    0           0 01124566777788889999988


Q ss_pred             cCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCC
Q 014997          194 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  235 (414)
Q Consensus       194 ~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~  235 (414)
                      ... +.......+.  ..+.+.++.++.+|.+|+|||.+|..
T Consensus        85 ~~~-v~~~~~~~~~--~~~~~~~~~~~~~~~liiATG~~~~~  123 (314)
T 4a5l_A           85 TET-IDHVDFSTQP--FKLFTEEGKEVLTKSVIIATGATAKR  123 (314)
T ss_dssp             CCC-EEEEECSSSS--EEEEETTCCEEEEEEEEECCCEEECC
T ss_pred             EeE-EEEeecCCCc--eEEEECCCeEEEEeEEEEcccccccc
Confidence            764 4555433222  35667888899999999999998754

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=98.40  E-value=2.1e-06  Score=87.82  Aligned_cols=101  Identities=17%  Similarity=0.166  Sum_probs=77.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc-----------------------------------------
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----------------------------------------  171 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----------------------------------------  171 (414)
                      ..+|+|||+|..|+.+|..|++.|.+|+|+++.+.+...                                         
T Consensus       126 ~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~  205 (571)
T 1y0p_A          126 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNIND  205 (571)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCceEEeCCCHHHHHhCCCCCHHHHHHHHHHhcCCCCC
Confidence            357999999999999999999999999999987543110                                         


Q ss_pred             ----------------------------------------------ccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecC
Q 014997          172 ----------------------------------------------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS  205 (414)
Q Consensus       172 ----------------------------------------------~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~  205 (414)
                                                                    ..+..+...+.+.+++.||++++++.|+++..++
T Consensus       206 ~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~g~~~g~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~  285 (571)
T 1y0p_A          206 PALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDD  285 (571)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEECT
T ss_pred             HHHHHHHHHccHHHHHHHHhcCCCCccCcccCCcCCCeeEecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEeeEeEEcC
Confidence                                                          0002334556667788899999999999998654


Q ss_pred             CCcEEEEEeC--CCc--EEecCEEEEccCCcC
Q 014997          206 DGRVAAVKLE--DGS--TIDADTIVIGIGAKP  233 (414)
Q Consensus       206 ~~~~~~v~~~--~g~--~i~~D~vi~a~G~~p  233 (414)
                      ++++..|.+.  +|+  ++.+|.||+|+|...
T Consensus       286 ~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~  317 (571)
T 1y0p_A          286 KGTVKGILVKGMYKGYYWVKADAVILATGGFA  317 (571)
T ss_dssp             TSCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred             CCeEEEEEEEeCCCcEEEEECCeEEEeCCCcc
Confidence            4776656554  675  689999999999754

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.38  E-value=2.1e-06  Score=83.38  Aligned_cols=101  Identities=18%  Similarity=0.174  Sum_probs=76.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc------ccc------------------------------------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL------LQR------------------------------------  171 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~------l~~------------------------------------  171 (414)
                      .+|+|||||+.|+.+|..|++.|.+|+|+++.+..      ...                                    
T Consensus         3 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~   82 (394)
T 1k0i_A            3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQ   82 (394)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTE
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEEECCc
Confidence            36999999999999999999999999999987631      000                                    


Q ss_pred             --c--------------cC-HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEe-CCCc--EEecCEEEEccCC
Q 014997          172 --L--------------FT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL-EDGS--TIDADTIVIGIGA  231 (414)
Q Consensus       172 --~--------------~~-~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~-~~g~--~i~~D~vi~a~G~  231 (414)
                        .              ++ ..+.+.+.+.+.+.|++++.+++|+++..++++.+ .|.+ .+|+  ++.+|.||.|.|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~-~v~~~~~g~~~~~~a~~vV~AdG~  161 (394)
T 1k0i_A           83 RRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERP-YVTFERDGERLRLDCDYIAGCDGF  161 (394)
T ss_dssp             EEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSC-EEEEEETTEEEEEECSEEEECCCT
T ss_pred             eEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCce-EEEEecCCcEEEEEeCEEEECCCC
Confidence              0              01 23444566667778999999999999986433333 4566 6786  7999999999998


Q ss_pred             cCCC
Q 014997          232 KPTV  235 (414)
Q Consensus       232 ~p~~  235 (414)
                      ....
T Consensus       162 ~S~v  165 (394)
T 1k0i_A          162 HGIS  165 (394)
T ss_dssp             TCST
T ss_pred             CcHH
Confidence            7653

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.37  E-value=6.7e-07  Score=88.75  Aligned_cols=101  Identities=14%  Similarity=0.235  Sum_probs=72.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhC--CCcEEEEeeCCccc--c----cccCHH------HHHHHHHHHHhCCcEEEcCceEE
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLL--Q----RLFTPS------LAQRYEQLYQQNGVKFVKGASIK  199 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~l--~----~~~~~~------~~~~~~~~l~~~gv~i~~~~~v~  199 (414)
                      ++|+|||||+.|+.+|..|+++  |.+|+++++.+.+.  +    ..+...      +.....+.+++.|++++.+++|.
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~V~   82 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARYITEEELRRQKIQLLLNREVV   82 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC----------------CCCCHHHHHHTTEEEECSCEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhhhcCCCCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence            5899999999999999999998  89999999887542  1    001111      11113466788999999999999


Q ss_pred             EEEecCCCcEEEEE-eCCCcEEecCEEEEccCCcCCCh
Q 014997          200 NLEAGSDGRVAAVK-LEDGSTIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       200 ~i~~~~~~~~~~v~-~~~g~~i~~D~vi~a~G~~p~~~  236 (414)
                      .++.. +.. ..+. ..+++++.+|.+|+|+|.+|...
T Consensus        83 ~id~~-~~~-v~v~~~~~~~~~~~d~lviAtG~~p~~p  118 (452)
T 3oc4_A           83 AMDVE-NQL-IAWTRKEEQQWYSYDKLILATGASQFST  118 (452)
T ss_dssp             EEETT-TTE-EEEEETTEEEEEECSEEEECCCCCBCCC
T ss_pred             EEECC-CCE-EEEEecCceEEEEcCEEEECCCcccCCC
Confidence            99754 222 2232 23556899999999999988643

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.36  E-value=1.1e-06  Score=82.16  Aligned_cols=99  Identities=15%  Similarity=0.203  Sum_probs=73.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEE-EeeCCcc------------ccc----ccCHHHHHHHHHHHHhCCcEEEcC
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTI-IFPENHL------------LQR----LFTPSLAQRYEQLYQQNGVKFVKG  195 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtl-v~~~~~~------------l~~----~~~~~~~~~~~~~l~~~gv~i~~~  195 (414)
                      ..+|+|||+|+.|+.+|..|++.|.+|++ +++. .+            .+.    ....++...+.+.+++.|++++.+
T Consensus         4 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~~-~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   82 (315)
T 3r9u_A            4 MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKG-MPGGQITSSSEIENYPGVAQVMDGISFMAPWSEQCMRFGLKHEMV   82 (315)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHTCSCEEEECSS-STTGGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHTTTCCEEECC
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCeEEEEeCC-CCCceeeeeceeccCCCCCCCCCHHHHHHHHHHHHHHcCcEEEEE
Confidence            36899999999999999999999999999 9873 21            011    012467778888888999999998


Q ss_pred             ceEEEEEecCC-CcEEEE-EeCCCcEEecCEEEEccCCcCCCh
Q 014997          196 ASIKNLEAGSD-GRVAAV-KLEDGSTIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       196 ~~v~~i~~~~~-~~~~~v-~~~~g~~i~~D~vi~a~G~~p~~~  236 (414)
                       .+.++ .+++ +.. .+ ...++ ++.+|.+|+|+|..|...
T Consensus        83 -~v~~i-~~~~~~~~-~v~~~~~~-~~~~d~lvlAtG~~~~~~  121 (315)
T 3r9u_A           83 -GVEQI-LKNSDGSF-TIKLEGGK-TELAKAVIVCTGSAPKKA  121 (315)
T ss_dssp             -CEEEE-EECTTSCE-EEEETTSC-EEEEEEEEECCCEEECCC
T ss_pred             -EEEEE-ecCCCCcE-EEEEecCC-EEEeCEEEEeeCCCCCCC
Confidence             78888 4331 222 32 22344 899999999999987643

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=98.36  E-value=2.1e-06  Score=82.89  Aligned_cols=62  Identities=16%  Similarity=0.311  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhcC
Q 014997          177 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG  242 (414)
Q Consensus       177 ~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~g  242 (414)
                      +...+.+.+++.|++++.++.|+++..++ +.+ .|.+.+| ++.+|.||+|+|.... .++...+
T Consensus       166 ~~~~l~~~~~~~g~~i~~~~~v~~i~~~~-~~~-~v~~~~g-~~~a~~vV~A~G~~s~-~l~~~~~  227 (382)
T 1ryi_A          166 VCKAYVKAAKMLGAEIFEHTPVLHVERDG-EAL-FIKTPSG-DVWANHVVVASGVWSG-MFFKQLG  227 (382)
T ss_dssp             HHHHHHHHHHHTTCEEETTCCCCEEECSS-SSE-EEEETTE-EEEEEEEEECCGGGTH-HHHHHTT
T ss_pred             HHHHHHHHHHHCCCEEEcCCcEEEEEEEC-CEE-EEEcCCc-eEEcCEEEECCChhHH-HHHHhcC
Confidence            45566777888999999999999998653 444 6777777 7999999999998653 4555544

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.35  E-value=1.4e-06  Score=86.40  Aligned_cols=100  Identities=23%  Similarity=0.399  Sum_probs=70.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhC--CCcEEEEeeCCcccc------cccC-----HHHHHHHHHHH-HhCCcEEEcCceE
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQ------RLFT-----PSLAQRYEQLY-QQNGVKFVKGASI  198 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~l~------~~~~-----~~~~~~~~~~l-~~~gv~i~~~~~v  198 (414)
                      .++|+|||+|+.|+.+|..|++.  +.+|+++++.+.+..      ..+.     .++.....+.+ ++.|++++.++++
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~v   82 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGIPYVVEGLSTPDKLMYYPPEVFIKKRGIDLHLNAEV   82 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC------------------------CTHHHHTTCEEETTCEE
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcCCccccCCCCCHHHhhhcCHHHHHHhcCcEEEecCEE
Confidence            36899999999999999999987  789999999875311      0000     11111122233 6789999999999


Q ss_pred             EEEEecCCCcEEEEEeCCC-cEEecCEEEEccCCcCCCh
Q 014997          199 KNLEAGSDGRVAAVKLEDG-STIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       199 ~~i~~~~~~~~~~v~~~~g-~~i~~D~vi~a~G~~p~~~  236 (414)
                      ..++..  .  ..+.+.++ .++.+|.+|+|+|.+|...
T Consensus        83 ~~i~~~--~--~~v~~~~g~~~~~~d~lviAtG~~p~~p  117 (449)
T 3kd9_A           83 IEVDTG--Y--VRVRENGGEKSYEWDYLVFANGASPQVP  117 (449)
T ss_dssp             EEECSS--E--EEEECSSSEEEEECSEEEECCCEEECCC
T ss_pred             EEEecC--C--CEEEECCceEEEEcCEEEECCCCCCCCC
Confidence            998532  2  25666777 4899999999999988643

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=98.35  E-value=7.2e-06  Score=83.25  Aligned_cols=98  Identities=14%  Similarity=0.187  Sum_probs=75.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc--------c------------cccC----------------HHH
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------Q------------RLFT----------------PSL  177 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l--------~------------~~~~----------------~~~  177 (414)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.        +            ..+.                +++
T Consensus        17 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~~~i   96 (542)
T 1w4x_A           17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEI   96 (542)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHH
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCCHHHH
Confidence            479999999999999999999999999999875421        0            0001                234


Q ss_pred             HHHHHHHHHhCC--cEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCC
Q 014997          178 AQRYEQLYQQNG--VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  231 (414)
Q Consensus       178 ~~~~~~~l~~~g--v~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~  231 (414)
                      .+++....++.+  ++++++++|.+++.++++....|.+.+|+++.||.||+|+|.
T Consensus        97 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~  152 (542)
T 1w4x_A           97 LRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQ  152 (542)
T ss_dssp             HHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCS
T ss_pred             HHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCC
Confidence            555556566665  678999999999865444445688889989999999999995

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.35  E-value=3e-06  Score=79.49  Aligned_cols=98  Identities=19%  Similarity=0.225  Sum_probs=73.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc---cc--------c---cccCHHHHHHHHHHHHhCCcEEEcCceEE
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH---LL--------Q---RLFTPSLAQRYEQLYQQNGVKFVKGASIK  199 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~---~l--------~---~~~~~~~~~~~~~~l~~~gv~i~~~~~v~  199 (414)
                      -.|+|||+|+.|+.+|..|+++|.+|+++++...   .+        +   ....+++.........+.+..+..+..+.
T Consensus         7 yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~~gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (312)
T 4gcm_A            7 FDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKS   86 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHHTTCEEEECCCCE
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCeeecccccCCcCCccccchHHHHHHHHHHHhhccccccceeeee
Confidence            3699999999999999999999999999997531   11        0   01124566666677788888888877666


Q ss_pred             EEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCC
Q 014997          200 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  235 (414)
Q Consensus       200 ~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~  235 (414)
                      ..... ..   .+...+++++.+|.+|+|||.+|..
T Consensus        87 ~~~~~-~~---~~~~~~~~~~~~d~liiAtGs~~~~  118 (312)
T 4gcm_A           87 VEDKG-EY---KVINFGNKELTAKAVIIATGAEYKK  118 (312)
T ss_dssp             EEECS-SC---EEEECSSCEEEEEEEEECCCEEECC
T ss_pred             eeeee-cc---eeeccCCeEEEeceeEEcccCccCc
Confidence            55432 22   3456777899999999999998764

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.34  E-value=8.5e-07  Score=88.15  Aligned_cols=103  Identities=14%  Similarity=0.156  Sum_probs=75.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhCC-----CcEEEEeeCCccccc-------------------------------------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWK-----LDTTIIFPENHLLQR-------------------------------------  171 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g-----~~Vtlv~~~~~~l~~-------------------------------------  171 (414)
                      .+|+|||+|+.|+.+|..|++.|     .+|+++++.+.+...                                     
T Consensus        31 ~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l~~~  110 (463)
T 3s5w_A           31 HDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYLHKH  110 (463)
T ss_dssp             ESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHHHHT
T ss_pred             CCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHhhhhc
Confidence            37999999999999999999999     899999987632100                                     


Q ss_pred             -----------c--cCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCC-CcE--EEEEeCCCc----EEecCEEEEccCC
Q 014997          172 -----------L--FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD-GRV--AAVKLEDGS----TIDADTIVIGIGA  231 (414)
Q Consensus       172 -----------~--~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~-~~~--~~v~~~~g~----~i~~D~vi~a~G~  231 (414)
                                 .  ...++.+.+....++.+++++++++|++++..++ +..  ..|.+.+|.    ++.+|.||+|+|.
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAtG~  190 (463)
T 3s5w_A          111 DRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPGG  190 (463)
T ss_dssp             TCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEECCCC
T ss_pred             CceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEECCCC
Confidence                       0  0123445555555667899999999999975421 222  256666665    8999999999999


Q ss_pred             cCCCh
Q 014997          232 KPTVS  236 (414)
Q Consensus       232 ~p~~~  236 (414)
                      .|...
T Consensus       191 ~p~~p  195 (463)
T 3s5w_A          191 TPRIP  195 (463)
T ss_dssp             EECCC
T ss_pred             CCCCc
Confidence            87644

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.34  E-value=1.1e-06  Score=90.11  Aligned_cols=103  Identities=19%  Similarity=0.271  Sum_probs=75.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhC--CCcEEEEeeCCccc----------cccc-CH--HHHHHHHHHHHhCCcEEEcCc
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLL----------QRLF-TP--SLAQRYEQLYQQNGVKFVKGA  196 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~l----------~~~~-~~--~~~~~~~~~l~~~gv~i~~~~  196 (414)
                      ..++|+|||||+.|+.+|..|++.  |.+|+++++.+.+.          ...+ ..  .+...+....++.|+++++++
T Consensus        35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~~~~lp~~~~g~~~~~~~~~~~~~~~~~~~~gi~v~~~~  114 (588)
T 3ics_A           35 GSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGLPYYIGGVITERQKLLVQTVERMSKRFNLDIRVLS  114 (588)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTTSSCCGGGGBSSCHHHHHHHTTCEEECSE
T ss_pred             cCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccccCCCCchhhcCcCCChHHhhccCHHHHHHhcCcEEEECC
Confidence            457899999999999999999998  89999999987631          1000 11  122334555678899999999


Q ss_pred             eEEEEEecCCCcEEEEE-eCCCc--EEecCEEEEccCCcCCCh
Q 014997          197 SIKNLEAGSDGRVAAVK-LEDGS--TIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       197 ~v~~i~~~~~~~~~~v~-~~~g~--~i~~D~vi~a~G~~p~~~  236 (414)
                      .|..+... +..+ .+. +.+|+  .+.+|.+|+|+|.+|...
T Consensus       115 ~V~~id~~-~~~v-~v~~~~~g~~~~~~~d~lviAtG~~p~~p  155 (588)
T 3ics_A          115 EVVKINKE-EKTI-TIKNVTTNETYNEAYDVLILSPGAKPIVP  155 (588)
T ss_dssp             EEEEEETT-TTEE-EEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred             EEEEEECC-CCEE-EEeecCCCCEEEEeCCEEEECCCCCCCCC
Confidence            99999754 3332 333 24565  789999999999987643

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.33  E-value=3.2e-06  Score=82.08  Aligned_cols=98  Identities=15%  Similarity=0.154  Sum_probs=71.9

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc------ccCHHHH------------------------------
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------LFTPSLA------------------------------  178 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------~~~~~~~------------------------------  178 (414)
                      +|+|||+|+.|+-+|..|++.|.+|+|+++.+.+...      .+.+...                              
T Consensus         3 ~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~   82 (412)
T 4hb9_A            3 HVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAASSILPGYGIHINSFGKQALQECLPAENWLAFEEASRYIGGQSRFYN   82 (412)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCSSCCCCEEEECHHHHHHHHHHSCHHHHHHHHHHCEEECCCCEEEC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCCCcCCCceEEeeCHHHHHHHHHcCChHHHHHhhhhhcccCcceeEec
Confidence            7999999999999999999999999999986543111      0111100                              


Q ss_pred             -----------------------------HHHHHHHHh-CCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEc
Q 014997          179 -----------------------------QRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG  228 (414)
Q Consensus       179 -----------------------------~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a  228 (414)
                                                   ..+.+.|.+ .+..+++++++++++..+++.+ .+.+.||+++.+|+||-|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~v~~~~~v~~~~~~~~~~v-~v~~~dG~~~~adlvVgA  161 (412)
T 4hb9_A           83 ERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILNKGLANTIQWNKTFVRYEHIENGGI-KIFFADGSHENVDVLVGA  161 (412)
T ss_dssp             TTSCEEEC--------------CEEEEEHHHHHHHHHTTCTTTEECSCCEEEEEECTTSCE-EEEETTSCEEEESEEEEC
T ss_pred             CCcceecccCCccccccccccccceEeeHHHHHHHHHhhccceEEEEEEEEeeeEcCCCeE-EEEECCCCEEEeeEEEEC
Confidence                                         122333322 3456888999999987666654 688999999999999999


Q ss_pred             cCCcC
Q 014997          229 IGAKP  233 (414)
Q Consensus       229 ~G~~p  233 (414)
                      -|...
T Consensus       162 DG~~S  166 (412)
T 4hb9_A          162 DGSNS  166 (412)
T ss_dssp             CCTTC
T ss_pred             CCCCc
Confidence            99865

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.32  E-value=1.5e-06  Score=84.99  Aligned_cols=100  Identities=21%  Similarity=0.284  Sum_probs=73.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCC--cEEEEeeCCccccc--ccCHHHH-HHH-H----HHHHhCCcEEEcCceEEEEE
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLLQR--LFTPSLA-QRY-E----QLYQQNGVKFVKGASIKNLE  202 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~--~Vtlv~~~~~~l~~--~~~~~~~-~~~-~----~~l~~~gv~i~~~~~v~~i~  202 (414)
                      ..+|+|||+|+.|+.+|..|+++|.  +|+++++.+.+...  .+.+.+. ... .    +.+++.|++++.+++++.++
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~   86 (408)
T 2gqw_A            7 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFD   86 (408)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTHHHHHCCGGGSBCCCTTSCSCEEEETCCEEEEE
T ss_pred             CCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcccCCCCCHHHhCCCchhhhhHHHHHHCCCEEEcCCEEEEEE
Confidence            4689999999999999999999987  49999988753211  0111111 000 0    03567799999999999997


Q ss_pred             ecCCCcEEEEEeCCCcEEecCEEEEccCCcCCCh
Q 014997          203 AGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       203 ~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  236 (414)
                      ..  +.  .|.+.+|+++.+|.+|+|+|.+|...
T Consensus        87 ~~--~~--~v~~~~g~~~~~d~lviAtG~~~~~~  116 (408)
T 2gqw_A           87 PQ--AH--TVALSDGRTLPYGTLVLATGAAPRAL  116 (408)
T ss_dssp             TT--TT--EEEETTSCEEECSEEEECCCEEECCC
T ss_pred             CC--CC--EEEECCCCEEECCEEEECCCCCCCCC
Confidence            53  22  56778888999999999999988653

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=98.32  E-value=2.8e-06  Score=82.61  Aligned_cols=63  Identities=19%  Similarity=0.315  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhcC
Q 014997          177 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG  242 (414)
Q Consensus       177 ~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~g  242 (414)
                      +...+.+.+++.|++++.+++|+++..+ ++.+..+.+.+| ++.+|.||+|+|.... .+++..+
T Consensus       176 ~~~~l~~~~~~~g~~i~~~~~v~~i~~~-~~~~~~v~~~~g-~~~a~~vV~a~G~~s~-~l~~~~g  238 (405)
T 2gag_B          176 VAWAFARKANEMGVDIIQNCEVTGFIKD-GEKVTGVKTTRG-TIHAGKVALAGAGHSS-VLAEMAG  238 (405)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEES-SSBEEEEEETTC-CEEEEEEEECCGGGHH-HHHHHHT
T ss_pred             HHHHHHHHHHHCCCEEEcCCeEEEEEEe-CCEEEEEEeCCc-eEECCEEEECCchhHH-HHHHHcC
Confidence            3344666678889999999999999865 455667888888 6999999999998653 3444444

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.31  E-value=1.6e-06  Score=86.51  Aligned_cols=101  Identities=20%  Similarity=0.287  Sum_probs=63.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhC--CCcEEEEeeCCcc------cccccCH------HH-------HHHHHHHHHhCCcEE
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHL------LQRLFTP------SL-------AQRYEQLYQQNGVKF  192 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~------l~~~~~~------~~-------~~~~~~~l~~~gv~i  192 (414)
                      ++|+|||+|+.|+.+|..|++.  |.+|+++++.+.+      ++..+..      .+       ........++.|+++
T Consensus         4 ~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~   83 (472)
T 3iwa_A            4 KHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQATPYNVVRDPEFFRINKDVEA   83 (472)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC-------------------------------------------CEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccccccccchhhcCCCCchHHhccccchhccCHHHHhhhcCcEE
Confidence            6899999999999999999998  8999999998763      1111111      11       112222223579999


Q ss_pred             EcCceEEEEEecCCCcEEEEEe-CCCc--EEecCEEEEccCCcCCCh
Q 014997          193 VKGASIKNLEAGSDGRVAAVKL-EDGS--TIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       193 ~~~~~v~~i~~~~~~~~~~v~~-~~g~--~i~~D~vi~a~G~~p~~~  236 (414)
                      +.+++|..++.. +..+ .+.. .+|+  .+.+|.+|+|+|.+|...
T Consensus        84 ~~~~~V~~id~~-~~~v-~~~~~~~g~~~~~~~d~lviAtG~~p~~p  128 (472)
T 3iwa_A           84 LVETRAHAIDRA-AHTV-EIENLRTGERRTLKYDKLVLALGSKANRP  128 (472)
T ss_dssp             ECSEEEEEEETT-TTEE-EEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred             EECCEEEEEECC-CCEE-EEeecCCCCEEEEECCEEEEeCCCCcCCC
Confidence            999999999754 3322 3332 3465  799999999999987643

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=98.31  E-value=3.4e-06  Score=84.56  Aligned_cols=50  Identities=24%  Similarity=0.382  Sum_probs=41.7

Q ss_pred             HHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCc
Q 014997          182 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  232 (414)
Q Consensus       182 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~  232 (414)
                      .+.+++.|++|++++.|++|..+ ++++..|++.||+++.||.||++++..
T Consensus       228 ~~~~~~~Gg~I~~~~~V~~I~~~-~~~~~gV~~~~g~~~~ad~VV~~a~~~  277 (501)
T 4dgk_A          228 IKLFQDLGGEVVLNARVSHMETT-GNKIEAVHLEDGRRFLTQAVASNADVV  277 (501)
T ss_dssp             HHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTSCEEECSCEEECCC--
T ss_pred             HHHHHHhCCceeeecceeEEEee-CCeEEEEEecCCcEEEcCEEEECCCHH
Confidence            34557889999999999999864 677888999999999999999987654

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=98.30  E-value=2.8e-08  Score=97.16  Aligned_cols=48  Identities=25%  Similarity=0.275  Sum_probs=37.9

Q ss_pred             HhHHHHcCCeEEcCCcEEEEeCC----C--CEEEeCCCcEEecCeEEEccCCCCC
Q 014997           53 PEWYKEKGIEMIYQDPVTSIDIE----K--QTLITNSGKLLKYGSLIVATGCTAS  101 (414)
Q Consensus        53 ~~~~~~~~i~~~~~~~V~~id~~----~--~~V~~~~g~~~~yd~LviAtG~~~~  101 (414)
                      .+.+++.|++++.+++|+++..+    .  ..|.+++| ++.+|+||+|||+.+.
T Consensus       116 ~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~g-~i~ad~VVlAtG~~s~  169 (401)
T 2gqf_A          116 KSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNST-QWQCKNLIVATGGLSM  169 (401)
T ss_dssp             HHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTE-EEEESEEEECCCCSSC
T ss_pred             HHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECCC-EEECCEEEECCCCccC
Confidence            34556789999999999998754    2  25667666 7999999999999863

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.30  E-value=4.5e-06  Score=80.56  Aligned_cols=54  Identities=17%  Similarity=0.271  Sum_probs=43.1

Q ss_pred             HHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997          179 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       179 ~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (414)
                      ..+.+.+++.|++++.+++|+++..+ ++.+..|.+.+| ++.||.||+|+|....
T Consensus       153 ~~l~~~~~~~Gv~i~~~~~v~~i~~~-~~~v~gv~~~~g-~i~a~~VV~A~G~~s~  206 (382)
T 1y56_B          153 TAFAVKAKEYGAKLLEYTEVKGFLIE-NNEIKGVKTNKG-IIKTGIVVNATNAWAN  206 (382)
T ss_dssp             HHHHHHHHHTTCEEECSCCEEEEEES-SSBEEEEEETTE-EEECSEEEECCGGGHH
T ss_pred             HHHHHHHHHCCCEEECCceEEEEEEE-CCEEEEEEECCc-EEECCEEEECcchhHH
Confidence            34556677889999999999999865 455555778777 7999999999998653

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.30  E-value=5e-06  Score=85.18  Aligned_cols=99  Identities=19%  Similarity=0.236  Sum_probs=76.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc-cc-----------------------cc------------------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH-LL-----------------------QR------------------  171 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~-~l-----------------------~~------------------  171 (414)
                      -.|+|||||..|+++|..|++.|.+|+++++.+. +.                       ..                  
T Consensus        29 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~~l~~  108 (651)
T 3ces_A           29 FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILNA  108 (651)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEEEEST
T ss_pred             CCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccchhhhhc
Confidence            4799999999999999999999999999997631 10                       00                  


Q ss_pred             -----------ccC-HHHHHHHHHHHHh-CCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997          172 -----------LFT-PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       172 -----------~~~-~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (414)
                                 ..+ ..+...+.+.+++ .|++++ +..|+.+..+ ++.+..|.+.+|.++.||.||+|+|..+.
T Consensus       109 ~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~-~~~V~~L~~e-~g~V~GV~t~dG~~I~Ad~VVLATGt~s~  182 (651)
T 3ces_A          109 SKGPAVRATRAQADRVLYRQAVRTALENQPNLMIF-QQAVEDLIVE-NDRVVGAVTQMGLKFRAKAVVLTVGTFLD  182 (651)
T ss_dssp             TSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEES-SSBEEEEEETTSEEEEEEEEEECCSTTTC
T ss_pred             ccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEE-EEEEEEEEec-CCEEEEEEECCCCEEECCEEEEcCCCCcc
Confidence                       001 1345566677777 699995 5689998754 56677888889988999999999998653

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.28  E-value=5.7e-06  Score=84.43  Aligned_cols=99  Identities=17%  Similarity=0.251  Sum_probs=76.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc-cc-----------------------cc------------------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH-LL-----------------------QR------------------  171 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~-~l-----------------------~~------------------  171 (414)
                      -.|+|||||..|+++|..+++.|.+|.++++... +.                       ..                  
T Consensus        28 yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~~l~~  107 (637)
T 2zxi_A           28 FDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKMLNT  107 (637)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEEEEST
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccceeeccc
Confidence            5799999999999999999999999999998631 10                       00                  


Q ss_pred             -----------ccC-HHHHHHHHHHHHh-CCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997          172 -----------LFT-PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       172 -----------~~~-~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (414)
                                 ..+ ..+...+.+.+++ .|++++ +..|+.+..+ ++.+..|.+.+|..+.||.||+|+|..++
T Consensus       108 ~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~-~~~Vt~L~~e-~g~V~GV~t~dG~~i~AdaVVLATG~~s~  181 (637)
T 2zxi_A          108 RKGKAVQSPRAQADKKRYREYMKKVCENQENLYIK-QEEVVDIIVK-NNQVVGVRTNLGVEYKTKAVVVTTGTFLN  181 (637)
T ss_dssp             TSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ESCEEEEEES-SSBEEEEEETTSCEEECSEEEECCTTCBT
T ss_pred             ccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEE-EeEEEEEEec-CCEEEEEEECCCcEEEeCEEEEccCCCcc
Confidence                       000 1244556667777 599995 5789998754 56677889999999999999999998654

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=98.27  E-value=3.9e-06  Score=79.84  Aligned_cols=96  Identities=18%  Similarity=0.198  Sum_probs=69.6

Q ss_pred             CeEEEECCChHHHHHHHHHHh---CCCcEEEEeeCCcccccc----------------------cCH---H---------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVG---WKLDTTIIFPENHLLQRL----------------------FTP---S---------  176 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~---~g~~Vtlv~~~~~~l~~~----------------------~~~---~---------  176 (414)
                      .+|+|||+|.+|+-+|..|++   .|.+|+++++.+.+..+.                      .++   .         
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~   81 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYDELL   81 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHHHHH
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHHHHH
Confidence            379999999999999999999   899999999864321100                      000   1         


Q ss_pred             -----------------------------HHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEE
Q 014997          177 -----------------------------LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI  227 (414)
Q Consensus       177 -----------------------------~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~  227 (414)
                                                   +...+....++.|+++++++.|++++.++++ + .|.+.+|+.+.+|.||+
T Consensus        82 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~i~~~~~V~~i~~~~~~-~-~v~~~~g~~~~ad~vV~  159 (342)
T 3qj4_A           82 AYGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKESGAEVYFRHRVTQINLRDDK-W-EVSKQTGSPEQFDLIVL  159 (342)
T ss_dssp             HTTSCEECCSCEETCCC--CCEEEECTTCTTHHHHHHHHHHTCEEESSCCEEEEEECSSS-E-EEEESSSCCEEESEEEE
T ss_pred             hCCCeecCchhhcceeccCCccceecCCCHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCE-E-EEEECCCCEEEcCEEEE
Confidence                                         1112222333348999999999999876444 3 57888888789999999


Q ss_pred             ccCC
Q 014997          228 GIGA  231 (414)
Q Consensus       228 a~G~  231 (414)
                      |++.
T Consensus       160 A~p~  163 (342)
T 3qj4_A          160 TMPV  163 (342)
T ss_dssp             CSCH
T ss_pred             CCCH
Confidence            9884

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.26  E-value=5.1e-06  Score=82.37  Aligned_cols=100  Identities=20%  Similarity=0.220  Sum_probs=76.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc---------------c---------------------------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ---------------R---------------------------  171 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~---------------~---------------------------  171 (414)
                      .+|+|||||+.|+.+|..|++.|.+|+|+++.+.+..               .                           
T Consensus         7 ~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~~   86 (453)
T 3atr_A            7 YDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYSPDMQT   86 (453)
T ss_dssp             CSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEECTTSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEECCCCce
Confidence            4799999999999999999999999999998753210               0                           


Q ss_pred             ---------ccC-HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeC---CCc--EEecCEEEEccCCcCC
Q 014997          172 ---------LFT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGAKPT  234 (414)
Q Consensus       172 ---------~~~-~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~---~g~--~i~~D~vi~a~G~~p~  234 (414)
                               .++ ..+.+.+.+.+++.|++++.+++|+++..+ ++.+..|.+.   +|+  ++.||.||.|.|....
T Consensus        87 ~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s~  163 (453)
T 3atr_A           87 VWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFE-DGYVKGAVLFNRRTNEELTVYSKVVVEATGYSRS  163 (453)
T ss_dssp             EEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEE-TTEEEEEEEEETTTTEEEEEECSEEEECCGGGCT
T ss_pred             EEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEE-CCEEEEEEEEEcCCCceEEEEcCEEEECcCCchh
Confidence                     001 235566677777899999999999999864 4455445543   675  7999999999998765

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.25  E-value=9.3e-06  Score=83.15  Aligned_cols=101  Identities=20%  Similarity=0.299  Sum_probs=79.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhC------CCcEEEEeeCCccccc------------------------------------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGW------KLDTTIIFPENHLLQR------------------------------------  171 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~------g~~Vtlv~~~~~~l~~------------------------------------  171 (414)
                      -+|+|||+|+.|+.+|..|++.      |.+|+|+++.+.+-..                                    
T Consensus        36 ~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~ll~~~~~~g~~~~~~~~~~~~~  115 (584)
T 2gmh_A           36 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRFG  115 (584)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHHHHHHHhcCCceeeeechhhee
Confidence            4799999999999999999998      9999999986432100                                    


Q ss_pred             c--------c---C--------------HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeC------CC---
Q 014997          172 L--------F---T--------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE------DG---  217 (414)
Q Consensus       172 ~--------~---~--------------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~------~g---  217 (414)
                      .        +   +              ..+.+.+.+.+++.|+++++++.++++..++++.+..|.+.      +|   
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~  195 (584)
T 2gmh_A          116 ILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPK  195 (584)
T ss_dssp             EECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEE
T ss_pred             eeccCCCccccccCccccccCCCEEEeHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcc
Confidence            0        0   0              13455677777888999999999999987666777667775      33   


Q ss_pred             ------cEEecCEEEEccCCcCC
Q 014997          218 ------STIDADTIVIGIGAKPT  234 (414)
Q Consensus       218 ------~~i~~D~vi~a~G~~p~  234 (414)
                            .++.+|.||.|.|....
T Consensus       196 ~~~~~g~~i~Ad~VV~AdG~~S~  218 (584)
T 2gmh_A          196 TTFERGLELHAKVTIFAEGCHGH  218 (584)
T ss_dssp             EEEECCCEEECSEEEECCCTTCH
T ss_pred             cccCCceEEECCEEEEeeCCCch
Confidence                  68999999999999764

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.23  E-value=7.5e-06  Score=83.84  Aligned_cols=100  Identities=15%  Similarity=0.212  Sum_probs=77.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc------------------------------c------------
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL------------------------------Q------------  170 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l------------------------------~------------  170 (414)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+++.+..-                              .            
T Consensus        23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~  102 (591)
T 3i3l_A           23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATFLWGQDQ  102 (591)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEEECSSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEEEecCCC
Confidence            5789999999999999999999999999999872110                              0            


Q ss_pred             --------------------cccC-HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeC-CC--cEEecCEEE
Q 014997          171 --------------------RLFT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DG--STIDADTIV  226 (414)
Q Consensus       171 --------------------~~~~-~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~-~g--~~i~~D~vi  226 (414)
                                          ..++ ..+...+.+.+++.|++++.+++|+++... ++....|.+. +|  .++.||.||
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~-~g~~~~V~~~~~G~~~~i~AdlVV  181 (591)
T 3i3l_A          103 APWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLS-DPDRVVLTVRRGGESVTVESDFVI  181 (591)
T ss_dssp             CCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECC-STTCEEEEEEETTEEEEEEESEEE
T ss_pred             ccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCCEEEEEEecCCceEEEEcCEEE
Confidence                                0011 235566777778899999999999999854 3444567776 66  579999999


Q ss_pred             EccCCcC
Q 014997          227 IGIGAKP  233 (414)
Q Consensus       227 ~a~G~~p  233 (414)
                      .|+|...
T Consensus       182 ~AdG~~S  188 (591)
T 3i3l_A          182 DAGGSGG  188 (591)
T ss_dssp             ECCGGGC
T ss_pred             ECCCCcc
Confidence            9999865

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.23  E-value=8.7e-06  Score=82.04  Aligned_cols=100  Identities=17%  Similarity=0.185  Sum_probs=75.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc--------ccc----------------------------------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL--------LQR----------------------------------  171 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~--------l~~----------------------------------  171 (414)
                      .+|+|||||+.|+-+|..|++.|.+|+|+++.+..        .+.                                  
T Consensus         8 ~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~   87 (512)
T 3e1t_A            8 FDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFRWGKEP   87 (512)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEECSSCS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEEecCCc
Confidence            47999999999999999999999999999987410        000                                  


Q ss_pred             -------------------ccC-HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEE--EeCCCc--EEecCEEEE
Q 014997          172 -------------------LFT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV--KLEDGS--TIDADTIVI  227 (414)
Q Consensus       172 -------------------~~~-~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v--~~~~g~--~i~~D~vi~  227 (414)
                                         .++ ..+.+.+.+.+++.|++++.+++|+++..+ ++.+..+  ...+|+  ++.+|.||.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~-~~~v~gv~~~~~dG~~~~i~ad~VI~  166 (512)
T 3e1t_A           88 EPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLFE-GERAVGVRYRNTEGVELMAHARFIVD  166 (512)
T ss_dssp             SCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEE-TTEEEEEEEECSSSCEEEEEEEEEEE
T ss_pred             cccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEE-CCEEEEEEEEeCCCCEEEEEcCEEEE
Confidence                               001 134456677778899999999999999864 4554434  445674  799999999


Q ss_pred             ccCCcCC
Q 014997          228 GIGAKPT  234 (414)
Q Consensus       228 a~G~~p~  234 (414)
                      |+|....
T Consensus       167 AdG~~S~  173 (512)
T 3e1t_A          167 ASGNRTR  173 (512)
T ss_dssp             CCCTTCS
T ss_pred             CCCcchH
Confidence            9998653

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=98.22  E-value=9.4e-06  Score=77.89  Aligned_cols=53  Identities=17%  Similarity=0.332  Sum_probs=41.3

Q ss_pred             HHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcC
Q 014997          178 AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  233 (414)
Q Consensus       178 ~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p  233 (414)
                      ...+.+.+++.|++++.+++|+++..++++  ..+.+.+| ++.+|.||+|+|...
T Consensus       152 ~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~--~~v~~~~g-~~~a~~vV~a~G~~s  204 (372)
T 2uzz_A          152 IKTWIQLAKEAGCAQLFNCPVTAIRHDDDG--VTIETADG-EYQAKKAIVCAGTWV  204 (372)
T ss_dssp             HHHHHHHHHHTTCEEECSCCEEEEEECSSS--EEEEESSC-EEEEEEEEECCGGGG
T ss_pred             HHHHHHHHHHCCCEEEcCCEEEEEEEcCCE--EEEEECCC-eEEcCEEEEcCCccH
Confidence            344556677889999999999999865443  35677777 499999999999754

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.21  E-value=7.5e-06  Score=83.77  Aligned_cols=101  Identities=18%  Similarity=0.311  Sum_probs=75.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc-cc-----------------------cc----------------
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH-LL-----------------------QR----------------  171 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~-~l-----------------------~~----------------  171 (414)
                      ..-.|+|||||..|+++|..|++.|.+|+++++.+. +.                       ..                
T Consensus        20 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f~~l   99 (641)
T 3cp8_A           20 HMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQFRML   99 (641)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEEEEE
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCchhhc
Confidence            346899999999999999999999999999997631 10                       00                


Q ss_pred             -------------ccC-HHHHHHHHHHHHhC-CcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997          172 -------------LFT-PSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       172 -------------~~~-~~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (414)
                                   ..+ ..+...+.+.+++. |++++.+ .|+.+..+ ++.+..|.+.+|+++.||.||+|+|..++
T Consensus       100 ~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~~-~V~~L~~d-~g~V~GV~t~~G~~i~Ad~VVLATG~~s~  175 (641)
T 3cp8_A          100 NRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQD-TVIGVSAN-SGKFSSVTVRSGRAIQAKAAILACGTFLN  175 (641)
T ss_dssp             CSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEEC-CEEEEEEE-TTEEEEEEETTSCEEEEEEEEECCTTCBT
T ss_pred             ccccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEee-EEEEEEec-CCEEEEEEECCCcEEEeCEEEECcCCCCC
Confidence                         011 13455566677774 9999754 78888653 45666688889999999999999997754

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.21  E-value=1.4e-06  Score=86.52  Aligned_cols=100  Identities=21%  Similarity=0.246  Sum_probs=71.3

Q ss_pred             eEEEECCChHHHHHHHHHHhC--CCcEEEEeeCCccc----------cccc---CH-HHHHHHHHHHHhCCcEEEcCceE
Q 014997          135 KVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLL----------QRLF---TP-SLAQRYEQLYQQNGVKFVKGASI  198 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~l----------~~~~---~~-~~~~~~~~~l~~~gv~i~~~~~v  198 (414)
                      +|+|||+|+.|+.+|..|++.  |.+|+++++.+.+.          ....   ++ .+.....+.+++.|++++.++.+
T Consensus         2 dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v   81 (452)
T 2cdu_A            2 KVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSCGIALYLGKEIKNNDPRGLFYSSPEELSNLGANVQMRHQV   81 (452)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGGGHHHHHTTCBGGGCGGGGBSCCHHHHHHTTCEEEESEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcccccchhhhcCCcccCCHHHhhhcCHHHHHHcCCEEEeCCEE
Confidence            699999999999999999998  99999999987421          0010   11 11112345677889999999999


Q ss_pred             EEEEecCCCcEEEEEe-CC--CcEEecCEEEEccCCcCCCh
Q 014997          199 KNLEAGSDGRVAAVKL-ED--GSTIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       199 ~~i~~~~~~~~~~v~~-~~--g~~i~~D~vi~a~G~~p~~~  236 (414)
                      ..++.++ ..+ .+.. .+  ++++.+|.+|+|+|.+|...
T Consensus        82 ~~i~~~~-~~v-~v~~~~~g~~~~~~~d~lviAtGs~p~~p  120 (452)
T 2cdu_A           82 TNVDPET-KTI-KVKDLITNEEKTEAYDKLIMTTGSKPTVP  120 (452)
T ss_dssp             EEEEGGG-TEE-EEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred             EEEEcCC-CEE-EEEecCCCceEEEECCEEEEccCCCcCCC
Confidence            9987542 222 2322 12  45799999999999988643

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=98.20  E-value=1.2e-05  Score=83.87  Aligned_cols=53  Identities=15%  Similarity=0.226  Sum_probs=42.5

Q ss_pred             HHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcC
Q 014997          179 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  233 (414)
Q Consensus       179 ~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p  233 (414)
                      ..+.+.+++.|++++++++|+++..+++ .+ .|.+.+|.++.+|.||+|+|...
T Consensus       421 ~aL~~~a~~~Gv~i~~~t~V~~l~~~~~-~v-~V~t~~G~~i~Ad~VVlAtG~~s  473 (676)
T 3ps9_A          421 RNVLELAQQQGLQIYYQYQLQNFSRKDD-CW-LLNFAGDQQATHSVVVLANGHQI  473 (676)
T ss_dssp             HHHHHHHHHTTCEEEESCCEEEEEEETT-EE-EEEETTSCEEEESEEEECCGGGG
T ss_pred             HHHHHHHHhCCCEEEeCCeeeEEEEeCC-eE-EEEECCCCEEECCEEEECCCcch
Confidence            3445556778999999999999986544 33 67888888899999999999864

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.20  E-value=2.4e-06  Score=87.18  Aligned_cols=101  Identities=23%  Similarity=0.257  Sum_probs=70.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhC--CCcEEEEeeCCccc------cccc-----CH--HHHHHHHHHHHhCCcEEEcCceE
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLL------QRLF-----TP--SLAQRYEQLYQQNGVKFVKGASI  198 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~l------~~~~-----~~--~~~~~~~~~l~~~gv~i~~~~~v  198 (414)
                      ++|+|||||+.|+.+|..|+++  +.+|+++++.+.+.      +..+     ..  .+........++.|++++.+++|
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V   81 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCGLPYHISGEIAQRSALVLQTPESFKARFNVEVRVKHEV   81 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTSSSCCGGGGBCCCHHHHHHHHCCEEETTEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccccccCchHHhcCCcCChHHhhccCHHHHHHhcCcEEEECCEE
Confidence            5899999999999999999988  78999999987642      1000     00  01112233334579999999999


Q ss_pred             EEEEecCCCcEEEEE-eCCCc--EEecCEEEEccCCcCCCh
Q 014997          199 KNLEAGSDGRVAAVK-LEDGS--TIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       199 ~~i~~~~~~~~~~v~-~~~g~--~i~~D~vi~a~G~~p~~~  236 (414)
                      ++++.. ...+ .+. +.+|+  ++.+|.+|+|+|.+|...
T Consensus        82 ~~id~~-~~~v-~~~~~~~g~~~~~~~d~lviAtG~~p~~p  120 (565)
T 3ntd_A           82 VAIDRA-AKLV-TVRRLLDGSEYQESYDTLLLSPGAAPIVP  120 (565)
T ss_dssp             EEEETT-TTEE-EEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred             EEEECC-CCEE-EEEecCCCCeEEEECCEEEECCCCCCCCC
Confidence            999753 3322 333 23354  799999999999987643

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=98.20  E-value=1e-06  Score=87.50  Aligned_cols=90  Identities=14%  Similarity=0.212  Sum_probs=69.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc-------cccc-cCHHHHHHHHHHHHhCCcEEEcCceEEEEEe
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL-------LQRL-FTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  203 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~-------l~~~-~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~  203 (414)
                      .+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+       ++.. ++.++.....+.+++.||++++++.+.    
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~----  196 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLVYGIPGFKLEKSVVERRVKLLADAGVIYHPNFEVG----  196 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHHTTCEEETTCCBT----
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCcEEEeCCEec----
Confidence            3578999999999999999999999999999998764       1211 355666777788899999999998652    


Q ss_pred             cCCCcEEEEEeCCCcEEecCEEEEccCCc
Q 014997          204 GSDGRVAAVKLEDGSTIDADTIVIGIGAK  232 (414)
Q Consensus       204 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~  232 (414)
                        .    .+.++++ .+.+|.||+|+|..
T Consensus       197 --~----~v~~~~~-~~~~d~vvlAtG~~  218 (456)
T 2vdc_G          197 --R----DASLPEL-RRKHVAVLVATGVY  218 (456)
T ss_dssp             --T----TBCHHHH-HSSCSEEEECCCCC
T ss_pred             --c----EEEhhHh-HhhCCEEEEecCCC
Confidence              0    1223332 25799999999986

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.19  E-value=1.2e-05  Score=82.22  Aligned_cols=102  Identities=20%  Similarity=0.225  Sum_probs=76.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc-----------------------------------------
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----------------------------------------  171 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----------------------------------------  171 (414)
                      ..+|+|||+|..|+.+|..|++.|.+|+++++.+.+...                                         
T Consensus       126 ~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~  205 (572)
T 1d4d_A          126 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNIND  205 (572)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTGGGCCSCEECCSSSTTGGGTCCCCTHHHHHHHHHHTTTCSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcchhhhCCeeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCC
Confidence            458999999999999999999999999999987532100                                         


Q ss_pred             --------------------------------------c--------cCHHHHHHHHHHHHhCCcEEEcCceEEEEEecC
Q 014997          172 --------------------------------------L--------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS  205 (414)
Q Consensus       172 --------------------------------------~--------~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~  205 (414)
                                                            .        .+..+...+.+.+++.||++++++.++++..++
T Consensus       206 ~~~v~~~~~~~~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~~~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~  285 (572)
T 1d4d_A          206 PELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDA  285 (572)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEEC-
T ss_pred             HHHHHHHHHccHHHHHHHHhcCCccccccccCCCcCCeeEecCCCCCCHHHHHHHHHHHHHHcCCeEEecCEEEEEEECC
Confidence                                                  0        011234456667788899999999999997553


Q ss_pred             CCcEEEEEeC--CCc--EEecCEEEEccCCcCC
Q 014997          206 DGRVAAVKLE--DGS--TIDADTIVIGIGAKPT  234 (414)
Q Consensus       206 ~~~~~~v~~~--~g~--~i~~D~vi~a~G~~p~  234 (414)
                      ++++..|.+.  +|+  .+.+|.||+|+|..+.
T Consensus       286 ~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~~  318 (572)
T 1d4d_A          286 SGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAK  318 (572)
T ss_dssp             -CCEEEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred             CCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCcc
Confidence            3676666654  664  6899999999997653

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.17  E-value=8.2e-06  Score=79.56  Aligned_cols=100  Identities=20%  Similarity=0.323  Sum_probs=74.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc-----------------------------------------
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-----------------------------------------  170 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-----------------------------------------  170 (414)
                      +..+|+|||||+.|+-+|..|++.|.+|+|+++.+.+..                                         
T Consensus        22 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~  101 (407)
T 3rp8_A           22 GHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRDFRS  101 (407)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEEEETTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEEEECCC
Confidence            346899999999999999999999999999998753210                                         


Q ss_pred             -c---ccC-----------------HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEcc
Q 014997          171 -R---LFT-----------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI  229 (414)
Q Consensus       171 -~---~~~-----------------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~  229 (414)
                       .   .++                 ..+.+.+.+.+++  ++++++++|++++.++++  ..+.+.+|+++.+|.||.|.
T Consensus       102 g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~a~~vV~Ad  177 (407)
T 3rp8_A          102 GENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR--DSVQFGKRVTRCEEDADG--VTVWFTDGSSASGDLLIAAD  177 (407)
T ss_dssp             CCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG--GGEEESCCEEEEEEETTE--EEEEETTSCEEEESEEEECC
T ss_pred             CCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCc--CEEEECCEEEEEEecCCc--EEEEEcCCCEEeeCEEEECC
Confidence             0   000                 1223344444444  889999999999865443  35788999999999999999


Q ss_pred             CCcCCC
Q 014997          230 GAKPTV  235 (414)
Q Consensus       230 G~~p~~  235 (414)
                      |.....
T Consensus       178 G~~S~v  183 (407)
T 3rp8_A          178 GSHSAL  183 (407)
T ss_dssp             CTTCSS
T ss_pred             CcChHH
Confidence            987654

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.17  E-value=5.8e-06  Score=80.46  Aligned_cols=101  Identities=18%  Similarity=0.308  Sum_probs=72.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccc------cCH-H-------------H--------------
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------FTP-S-------------L--------------  177 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~------~~~-~-------------~--------------  177 (414)
                      ...+|+|||||+.|+.+|..|++.|.+|+|+++.+.+..+.      +.+ .             +              
T Consensus        25 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~  104 (398)
T 2xdo_A           25 SDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVNIADE  104 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCEEEECS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccceEEECC
Confidence            34689999999999999999999999999999875432110      000 0             0              


Q ss_pred             ----------------------HHHHHHHHHhC--CcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcC
Q 014997          178 ----------------------AQRYEQLYQQN--GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  233 (414)
Q Consensus       178 ----------------------~~~~~~~l~~~--gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p  233 (414)
                                            ...+.+.|.+.  +++++++++|++++.++++ + .+.+.+|+++.+|.||.|.|...
T Consensus       105 ~g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v-~v~~~~g~~~~ad~vV~AdG~~S  182 (398)
T 2xdo_A          105 KGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGKKK-W-TLTFENKPSETADLVILANGGMS  182 (398)
T ss_dssp             SSEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCTTSEEESCCEEEEEECSSS-E-EEEETTSCCEEESEEEECSCTTC
T ss_pred             CCCchhhccccccCCCCCceECHHHHHHHHHhhcCCCEEEECCEEEEEEECCCE-E-EEEECCCcEEecCEEEECCCcch
Confidence                                  01122222221  3578889999999865443 3 57888998899999999999876


Q ss_pred             C
Q 014997          234 T  234 (414)
Q Consensus       234 ~  234 (414)
                      .
T Consensus       183 ~  183 (398)
T 2xdo_A          183 K  183 (398)
T ss_dssp             S
T ss_pred             h
Confidence            4

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.16  E-value=2.3e-06  Score=84.69  Aligned_cols=101  Identities=19%  Similarity=0.222  Sum_probs=71.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhC--CCcEEEEeeCCcccc----------ccc-C-HHHHHHHHHHHHhCCcEEEcCceEE
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQ----------RLF-T-PSLAQRYEQLYQQNGVKFVKGASIK  199 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~l~----------~~~-~-~~~~~~~~~~l~~~gv~i~~~~~v~  199 (414)
                      ++|+|||+|+.|+.+|..|++.  |.+|+++++.+.+..          ... + .++.....+.+++.||+++.++.+.
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~   80 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEIT   80 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcccccchhhhcCccCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence            3699999999999999999987  899999998865310          000 1 1111223456778899999999999


Q ss_pred             EEEecCCCcEEEEEe-CCCc--EEecCEEEEccCCcCCCh
Q 014997          200 NLEAGSDGRVAAVKL-EDGS--TIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       200 ~i~~~~~~~~~~v~~-~~g~--~i~~D~vi~a~G~~p~~~  236 (414)
                      .+..+ +..+ .+.. .+|+  ++.+|.+|+|+|.+|...
T Consensus        81 ~i~~~-~~~v-~~~~~~~g~~~~~~~d~lviAtG~~p~~p  118 (447)
T 1nhp_A           81 AIQPK-EHQV-TVKDLVSGEERVENYDKLIISPGAVPFEL  118 (447)
T ss_dssp             EEETT-TTEE-EEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred             EEeCC-CCEE-EEEecCCCceEEEeCCEEEEcCCCCcCCC
Confidence            88743 2222 3332 3465  489999999999988643

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.15  E-value=8.5e-06  Score=82.57  Aligned_cols=100  Identities=16%  Similarity=0.183  Sum_probs=75.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc--------------------------------------------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------------------------------------------  169 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l--------------------------------------------  169 (414)
                      .+|+|||||+.|+-+|..|+++|.+|+|+++.+.+.                                            
T Consensus         6 ~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~   85 (535)
T 3ihg_A            6 VDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVADEVVRADDIRGTQGDFVIRLAE   85 (535)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHTTCHHHHHHSCCSSCTTSCCEEEEES
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCccceECHHHHHHHHHcCCHHHHHhhCCCcccccceeeeEEe
Confidence            479999999999999999999999999999874220                                            


Q ss_pred             -------c--------------c-------ccC-HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCc--EEEEEeCCC-
Q 014997          170 -------Q--------------R-------LFT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR--VAAVKLEDG-  217 (414)
Q Consensus       170 -------~--------------~-------~~~-~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~--~~~v~~~~g-  217 (414)
                             .              .       .++ ..+...+.+.+++.|++++++++|++++.++++.  -..+.+.++ 
T Consensus        86 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~~~~~~  165 (535)
T 3ihg_A           86 SVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAGPD  165 (535)
T ss_dssp             SSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEEEEEEEETT
T ss_pred             ccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccEEEEEEcCC
Confidence                   0              0       000 2345566777788899999999999998765411  224555555 


Q ss_pred             --cEEecCEEEEccCCcC
Q 014997          218 --STIDADTIVIGIGAKP  233 (414)
Q Consensus       218 --~~i~~D~vi~a~G~~p  233 (414)
                        .++.||.||.|.|...
T Consensus       166 ~~~~i~a~~vV~AdG~~S  183 (535)
T 3ihg_A          166 GEYDLRAGYLVGADGNRS  183 (535)
T ss_dssp             EEEEEEEEEEEECCCTTC
T ss_pred             CeEEEEeCEEEECCCCcc
Confidence              6799999999999864

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.13  E-value=7.9e-06  Score=83.39  Aligned_cols=98  Identities=17%  Similarity=0.248  Sum_probs=75.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc-------------------------------------ccc----
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------------------------------------QRL----  172 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------------------------------------~~~----  172 (414)
                      ..|+|||+|+.|+-+|..|++.|.+|+|+++.+.+.                                     ...    
T Consensus        50 ~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~  129 (570)
T 3fmw_A           50 TDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGIFTQG  129 (570)
T ss_dssp             -CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTBCTTC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCccccc
Confidence            479999999999999999999999999999753210                                     000    


Q ss_pred             ---------------c-CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEe--CCC-cEEecCEEEEccCCcC
Q 014997          173 ---------------F-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL--EDG-STIDADTIVIGIGAKP  233 (414)
Q Consensus       173 ---------------~-~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~--~~g-~~i~~D~vi~a~G~~p  233 (414)
                                     + ...+.+.+.+.+++.|++++.+++|++++.++++.  .+.+  .+| +++.+|.||.|.|...
T Consensus       130 ~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v--~v~~~~~~G~~~~~a~~vV~ADG~~S  207 (570)
T 3fmw_A          130 LDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAV--EVTVAGPSGPYPVRARYGVGCDGGRS  207 (570)
T ss_dssp             CBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCE--EEEEEETTEEEEEEESEEEECSCSSC
T ss_pred             ccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeE--EEEEEeCCCcEEEEeCEEEEcCCCCc
Confidence                           0 12345566777777899999999999998765553  3455  788 6899999999999865

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=98.13  E-value=1.5e-05  Score=76.95  Aligned_cols=62  Identities=18%  Similarity=0.458  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhcC
Q 014997          177 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG  242 (414)
Q Consensus       177 ~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~g  242 (414)
                      +...+.+.+++.|++++.+++|+++...+++ + .+.+++| ++.+|.||+|+|...+ .++...+
T Consensus       152 ~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~-~-~v~~~~g-~~~a~~vV~A~G~~~~-~l~~~~g  213 (389)
T 2gf3_A          152 CIRAYRELAEARGAKVLTHTRVEDFDISPDS-V-KIETANG-SYTADKLIVSMGAWNS-KLLSKLN  213 (389)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEECSSC-E-EEEETTE-EEEEEEEEECCGGGHH-HHGGGGT
T ss_pred             HHHHHHHHHHHCCCEEEcCcEEEEEEecCCe-E-EEEeCCC-EEEeCEEEEecCccHH-HHhhhhc
Confidence            3345566677889999999999999865443 2 4667666 7999999999998654 4444444

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=98.12  E-value=3e-05  Score=78.60  Aligned_cols=56  Identities=16%  Similarity=0.290  Sum_probs=45.3

Q ss_pred             HHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCC
Q 014997          179 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  235 (414)
Q Consensus       179 ~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~  235 (414)
                      ..+.+.+++.|++++.+ +|+++..++++.+..|.+.+|+++.+|.||.|.|.....
T Consensus       169 ~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~~  224 (538)
T 2aqj_A          169 DFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGLL  224 (538)
T ss_dssp             HHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCCC
T ss_pred             HHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchhh
Confidence            34455566789999999 899998765666667888999889999999999987653

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=98.10  E-value=2.6e-05  Score=81.47  Aligned_cols=53  Identities=15%  Similarity=0.198  Sum_probs=41.2

Q ss_pred             HHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCc-EEecCEEEEccCCcCC
Q 014997          180 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIGAKPT  234 (414)
Q Consensus       180 ~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~-~i~~D~vi~a~G~~p~  234 (414)
                      .+.+.+++.|++++.+++|+++..++++ + .|.+.+|. ++.+|.||+|+|....
T Consensus       417 aL~~~a~~~Gv~i~~~t~V~~l~~~~~~-v-~V~t~~G~~~i~Ad~VVlAtG~~s~  470 (689)
T 3pvc_A          417 ALMMLAQQNGMTCHYQHELQRLKRIDSQ-W-QLTFGQSQAAKHHATVILATGHRLP  470 (689)
T ss_dssp             HHHHHHHHTTCEEEESCCEEEEEECSSS-E-EEEEC-CCCCEEESEEEECCGGGTT
T ss_pred             HHHHHHHhCCCEEEeCCeEeEEEEeCCe-E-EEEeCCCcEEEECCEEEECCCcchh
Confidence            3445556789999999999999876444 3 67888887 7999999999998743

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.10  E-value=3.5e-06  Score=79.76  Aligned_cols=36  Identities=25%  Similarity=0.287  Sum_probs=31.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHh--CCCcEEEEeeCCcc
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVG--WKLDTTIIFPENHL  168 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~~  168 (414)
                      ...|+|||+|+.|+.+|..|++  .|.+|+++++.+.+
T Consensus        65 ~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~  102 (326)
T 3fpz_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP  102 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCC
Confidence            4679999999999999999964  59999999987654

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.09  E-value=8.7e-06  Score=81.36  Aligned_cols=101  Identities=16%  Similarity=0.260  Sum_probs=70.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhC--CCcEEEEeeCCccc------cccc------CHHHHHHHHHHH-HhCCcEEEcCceE
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLL------QRLF------TPSLAQRYEQLY-QQNGVKFVKGASI  198 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~l------~~~~------~~~~~~~~~~~l-~~~gv~i~~~~~v  198 (414)
                      .+|+|||+|+.|+.+|..|++.  |.+|+++++.+.+.      +..+      ...+.....+.+ ++.|++++.++.+
T Consensus        37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gv~~~~~~~v  116 (480)
T 3cgb_A           37 MNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYVISGAIASTEKLIARNVKTFRDKYGIDAKVRHEV  116 (480)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGGHHHHHTTSSSCGGGGBSSCHHHHHHTTCCEEESSEEE
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCCcchhhcCCcCCHHHhhhcCHHHHHhhcCCEEEeCCEE
Confidence            5899999999999999999986  89999999876531      1000      011111123445 4459999999999


Q ss_pred             EEEEecCCCcEEEEEe-CCCc--EEecCEEEEccCCcCCCh
Q 014997          199 KNLEAGSDGRVAAVKL-EDGS--TIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       199 ~~i~~~~~~~~~~v~~-~~g~--~i~~D~vi~a~G~~p~~~  236 (414)
                      ..++.+ +..+ .+.. .+|+  ++.+|.+|+|+|.+|...
T Consensus       117 ~~i~~~-~~~v-~v~~~~~g~~~~~~~d~lviAtG~~p~~p  155 (480)
T 3cgb_A          117 TKVDTE-KKIV-YAEHTKTKDVFEFSYDRLLIATGVRPVMP  155 (480)
T ss_dssp             EEEETT-TTEE-EEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred             EEEECC-CCEE-EEEEcCCCceEEEEcCEEEECCCCcccCC
Confidence            999753 2222 3333 4566  799999999999988643

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=98.09  E-value=3.8e-06  Score=84.46  Aligned_cols=101  Identities=17%  Similarity=0.317  Sum_probs=68.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc---------ccCH-HHHHHHHHHH--HhCCcEEEcCceEEE
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR---------LFTP-SLAQRYEQLY--QQNGVKFVKGASIKN  200 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~---------~~~~-~~~~~~~~~l--~~~gv~i~~~~~v~~  200 (414)
                      .++|||||||+.|+.+|..|++.+.+||||++.+..+-.         .+++ ++...+.+.+  ++.+++++.+ ++++
T Consensus        42 KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~~~~~PlL~~va~G~l~~~~i~~p~~~~~~~~~~~v~~~~~-~v~~  120 (502)
T 4g6h_A           42 KPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFALKKKGNVTYYEA-EATS  120 (502)
T ss_dssp             SCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSEEECGGGGGGTTTTSSCGGGGEEEHHHHHTTCSSCEEEEEE-EEEE
T ss_pred             CCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCCcccccchhHHhhccccHHHhhhhHHHHHHhhcCCeEEEEE-EEEE
Confidence            358999999999999999999999999999998753211         1111 1111122322  3457888875 6788


Q ss_pred             EEecCCCcEEEEE------------------eCCCcEEecCEEEEccCCcCCCh
Q 014997          201 LEAGSDGRVAAVK------------------LEDGSTIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       201 i~~~~~~~~~~v~------------------~~~g~~i~~D~vi~a~G~~p~~~  236 (414)
                      |+.+. ..+ .+.                  ..++.++++|.+|+|+|.+|+..
T Consensus       121 ID~~~-k~V-~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~~  172 (502)
T 4g6h_A          121 INPDR-NTV-TIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTF  172 (502)
T ss_dssp             EEGGG-TEE-EEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECCT
T ss_pred             EEhhh-CEE-EEeecccceeecccccccccccCCceEEeCCEEEEcCCcccccC
Confidence            87532 222 221                  13567899999999999998753

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=98.08  E-value=1e-05  Score=77.69  Aligned_cols=60  Identities=17%  Similarity=0.127  Sum_probs=44.3

Q ss_pred             HHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhcC
Q 014997          179 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG  242 (414)
Q Consensus       179 ~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~g  242 (414)
                      ..+.+.+++.|++++.++.|+++..++++  ..|.+.+| ++.||.||+|+|.... .++...+
T Consensus       158 ~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~--~~V~t~~g-~i~a~~VV~A~G~~s~-~l~~~~g  217 (381)
T 3nyc_A          158 QGYLRGIRRNQGQVLCNHEALEIRRVDGA--WEVRCDAG-SYRAAVLVNAAGAWCD-AIAGLAG  217 (381)
T ss_dssp             HHHHHHHHHTTCEEESSCCCCEEEEETTE--EEEECSSE-EEEESEEEECCGGGHH-HHHHHHT
T ss_pred             HHHHHHHHHCCCEEEcCCEEEEEEEeCCe--EEEEeCCC-EEEcCEEEECCChhHH-HHHHHhC
Confidence            34556667889999999999999865433  46777777 7999999999997543 3444333

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.08  E-value=4.8e-06  Score=82.23  Aligned_cols=99  Identities=17%  Similarity=0.190  Sum_probs=68.4

Q ss_pred             eEEEECCChHHHHHHHHHHhCC--CcEEEEeeCCcccc-cc-cC---------HH--HHHHHHHHHHhCCcEEEcCceEE
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQ-RL-FT---------PS--LAQRYEQLYQQNGVKFVKGASIK  199 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l~-~~-~~---------~~--~~~~~~~~l~~~gv~i~~~~~v~  199 (414)
                      ||+|||+|+.|+.+|..|+++|  .+|+++++++...- +. ++         ..  +.....+.+++.||+++.+++|+
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~   81 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYVIGEVVEDRRYALAYTPEKFYDRKQITVKTYHEVI   81 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGGGHHHHHTTSSCCGGGTBCCCHHHHHHHHCCEEEETEEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcchhHHHHcCCccchhhhhhcCHHHHHHhcCCEEEeCCeEE
Confidence            6999999999999999999887  57999998764321 00 00         00  00112345677899999999999


Q ss_pred             EEEecCCCcEEEEEeC---CCcEEecCEEEEccCCcCCC
Q 014997          200 NLEAGSDGRVAAVKLE---DGSTIDADTIVIGIGAKPTV  235 (414)
Q Consensus       200 ~i~~~~~~~~~~v~~~---~g~~i~~D~vi~a~G~~p~~  235 (414)
                      .+...  .+...+...   ++.++.+|.+|+|+|.+|+.
T Consensus        82 ~id~~--~~~~~~~~~~~~~~~~~~yd~lVIATGs~p~~  118 (437)
T 4eqs_A           82 AINDE--RQTVSVLNRKTNEQFEESYDKLILSPGASANS  118 (437)
T ss_dssp             EEETT--TTEEEEEETTTTEEEEEECSEEEECCCEEECC
T ss_pred             EEEcc--CcEEEEEeccCCceEEEEcCEEEECCCCcccc
Confidence            99743  222223222   23468999999999999874

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.08  E-value=2.8e-05  Score=73.20  Aligned_cols=102  Identities=21%  Similarity=0.231  Sum_probs=73.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhC--CCcEEEEeeCCcccccc-------------------------------------cC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQRL-------------------------------------FT  174 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~l~~~-------------------------------------~~  174 (414)
                      .+|+|||+|+.|+.+|..|++.  |.+|+++++.+.+....                                     ..
T Consensus        66 ~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~g~~~~~~~~  145 (326)
T 2gjc_A           66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKHA  145 (326)
T ss_dssp             ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHTTCCCEECSSEEEESCH
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccCcccchhhhhhHHHHHHHhhCcccccCCCeEEEcch
Confidence            4899999999999999999998  99999999865431000                                     01


Q ss_pred             HHHHHHHHHHHHh-CCcEEEcCceEEEEEecC--C-C--cEEEEEeC--------------CCcEEec------------
Q 014997          175 PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGS--D-G--RVAAVKLE--------------DGSTIDA------------  222 (414)
Q Consensus       175 ~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~--~-~--~~~~v~~~--------------~g~~i~~------------  222 (414)
                      .++...+.+.+.+ .||+++.++.+.++..++  + +  ++..|...              ++.++.|            
T Consensus       146 ~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~g~~~~~~d~~~I~A~G~~~~~~~~~~  225 (326)
T 2gjc_A          146 ALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLS  225 (326)
T ss_dssp             HHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEHHHHTC---CCCCCCEEEEESCCCSSSCCCSS
T ss_pred             HHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecceeecccccceeccCceEEEEeecccccccccc
Confidence            2334455555666 499999999999997653  3 4  66666542              3457999            


Q ss_pred             ---CEEEEccCCcCCC
Q 014997          223 ---DTIVIGIGAKPTV  235 (414)
Q Consensus       223 ---D~vi~a~G~~p~~  235 (414)
                         +.||.|+|.....
T Consensus       226 ~~~~~VV~ATG~~~~~  241 (326)
T 2gjc_A          226 QKHGVILSTTGHDGPF  241 (326)
T ss_dssp             TTCCEEEECCCCC--C
T ss_pred             ccCCEEEECcCCCchH
Confidence               9999999987543

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.08  E-value=7.5e-06  Score=81.52  Aligned_cols=98  Identities=22%  Similarity=0.275  Sum_probs=71.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccc------------------------------cCH-HH-----
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------------------------------FTP-SL-----  177 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~------------------------------~~~-~~-----  177 (414)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++.+.+-..+                              ++. .+     
T Consensus         5 ~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (466)
T 3l8k_A            5 YDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTVQDRKD   84 (466)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHHHHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHHHHHHH
Confidence            479999999999999999999999999999766542110                              000 00     


Q ss_pred             -----H--HHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcE--EecCEEEEccCCcCCCh
Q 014997          178 -----A--QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST--IDADTIVIGIGAKPTVS  236 (414)
Q Consensus       178 -----~--~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~--i~~D~vi~a~G~~p~~~  236 (414)
                           .  ..+...+++.||+++.+ .+..+..   . ...|.+.+|++  +.+|.+|+|+|.+|...
T Consensus        85 ~~~~l~~~~~~~~~~~~~~v~~~~g-~v~~id~---~-~~~V~~~~g~~~~~~~d~lviAtG~~p~~p  147 (466)
T 3l8k_A           85 YVQELRFKQHKRNMSQYETLTFYKG-YVKIKDP---T-HVIVKTDEGKEIEAETRYMIIASGAETAKL  147 (466)
T ss_dssp             HHHHHHHHHHHHHHTTCTTEEEESE-EEEEEET---T-EEEEEETTSCEEEEEEEEEEECCCEEECCC
T ss_pred             hheeccccchHHHHHHhCCCEEEEe-EEEEecC---C-eEEEEcCCCcEEEEecCEEEECCCCCccCC
Confidence                 0  33444556679999987 5666652   2 23677788888  99999999999987643

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.07  E-value=3.5e-06  Score=84.53  Aligned_cols=99  Identities=21%  Similarity=0.385  Sum_probs=70.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhC--CCcEEEEeeCCccc------cccc--CH--HHHHH--------------------
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLL------QRLF--TP--SLAQR--------------------  180 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~l------~~~~--~~--~~~~~--------------------  180 (414)
                      ..+++|||+|+.|+.+|..|++.  +.+|+++++.+.+.      ...+  ..  .....                    
T Consensus        11 ~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r~~lsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (493)
T 1m6i_A           11 HVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSF   90 (493)
T ss_dssp             EEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGGG
T ss_pred             cCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCHHhhcCCccchhhcccccccccccccccccchHh
Confidence            45799999999999999999876  88999999886431      1000  00  00000                    


Q ss_pred             HH---H--HHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCC
Q 014997          181 YE---Q--LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  235 (414)
Q Consensus       181 ~~---~--~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~  235 (414)
                      +.   +  .+.+.||+++.++.+..++...  +  .|.+.+|+++.+|.+|+|+|.+|..
T Consensus        91 ~~~~~~l~~~~~~gv~~~~g~~v~~id~~~--~--~V~~~~g~~i~yd~lviATGs~p~~  146 (493)
T 1m6i_A           91 YVSAQDLPHIENGGVAVLTGKKVVQLDVRD--N--MVKLNDGSQITYEKCLIATGGTPRS  146 (493)
T ss_dssp             SBCTTTTTTSTTCEEEEEETCCEEEEEGGG--T--EEEETTSCEEEEEEEEECCCEEECC
T ss_pred             hcchhhhhhhhcCCeEEEcCCEEEEEECCC--C--EEEECCCCEEECCEEEECCCCCCCC
Confidence            00   0  0124689999999999997542  2  5778899999999999999998864

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=98.06  E-value=3.4e-05  Score=75.85  Aligned_cols=55  Identities=25%  Similarity=0.300  Sum_probs=44.9

Q ss_pred             HHHHHHHHHhCCcEEEcCc---eEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcC
Q 014997          178 AQRYEQLYQQNGVKFVKGA---SIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  233 (414)
Q Consensus       178 ~~~~~~~l~~~gv~i~~~~---~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p  233 (414)
                      ...+.+.+++.|++|++++   .|+++..+ ++.+..|.+.+|+++.||.||+|+|...
T Consensus       164 ~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~-~~~v~gV~t~~G~~i~Ad~VV~AtG~~s  221 (438)
T 3dje_A          164 LVAAAREAQRMGVKFVTGTPQGRVVTLIFE-NNDVKGAVTADGKIWRAERTFLCAGASA  221 (438)
T ss_dssp             HHHHHHHHHHTTCEEEESTTTTCEEEEEEE-TTEEEEEEETTTEEEECSEEEECCGGGG
T ss_pred             HHHHHHHHHhcCCEEEeCCcCceEEEEEec-CCeEEEEEECCCCEEECCEEEECCCCCh
Confidence            3445566778899999999   99999864 5566668999998899999999999754

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.05  E-value=1.5e-05  Score=80.44  Aligned_cols=97  Identities=15%  Similarity=0.238  Sum_probs=69.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc---------------------------------ccc-----C
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ---------------------------------RLF-----T  174 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~---------------------------------~~~-----~  174 (414)
                      ..+|+|||||+.|+.+|..|++.|.+|+++++.+.+..                                 ...     .
T Consensus        43 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  122 (523)
T 1mo9_A           43 EYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGI  122 (523)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTCCCCH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCcccccCcCchHHHHHHHHHHHHHhhhhhcCcHHHHHhhhhhH
Confidence            35799999999999999999999999999999873211                                 000     0


Q ss_pred             HHHHHHH----H---HHH-----HhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCCh
Q 014997          175 PSLAQRY----E---QLY-----QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       175 ~~~~~~~----~---~~l-----~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  236 (414)
                      .++...+    .   +.+     ++.||++++...+..+..   .   .+.+. |+.+.+|.+|+|+|.+|...
T Consensus       123 ~~~~~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~---~---~v~~~-g~~~~~d~lViATGs~p~~p  189 (523)
T 1mo9_A          123 KEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDN---H---TVEAA-GKVFKAKNLILAVGAGPGTL  189 (523)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEET---T---EEEET-TEEEEBSCEEECCCEECCCC
T ss_pred             HHHHHHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeC---C---EEEEC-CEEEEeCEEEECCCCCCCCC
Confidence            1111112    2   445     778999995567777753   2   45555 67899999999999988643

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.05  E-value=1e-05  Score=80.55  Aligned_cols=98  Identities=24%  Similarity=0.311  Sum_probs=69.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccc-------------------------------------cC-H
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-------------------------------------FT-P  175 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~-------------------------------------~~-~  175 (414)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++.+.+-..+                                     ++ +
T Consensus         3 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   82 (468)
T 2qae_A            3 YDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGEGVTMDSA   82 (468)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGGGCEECHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCCCCccCHH
Confidence            479999999999999999999999999999986431000                                     00 0


Q ss_pred             H-----------HHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCC--cEEecCEEEEccCCcCCCh
Q 014997          176 S-----------LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       176 ~-----------~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~  236 (414)
                      .           +...+.+.+++.||+++.++.+ .+.   .. ...+.+.+|  +++.+|.+|+|+|.+|...
T Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~-~i~---~~-~~~v~~~~G~~~~~~~d~lviAtG~~p~~p  151 (468)
T 2qae_A           83 KMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGS-FET---AH-SIRVNGLDGKQEMLETKKTIIATGSEPTEL  151 (468)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEE-EEE---TT-EEEEEETTSCEEEEEEEEEEECCCEEECCB
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-Eee---CC-EEEEEecCCceEEEEcCEEEECCCCCcCCC
Confidence            0           1112345567789999988754 343   12 235666777  6899999999999988643

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.05  E-value=1.7e-05  Score=79.34  Aligned_cols=93  Identities=23%  Similarity=0.287  Sum_probs=68.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc-----------------------------------ccC----
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----------------------------------LFT----  174 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----------------------------------~~~----  174 (414)
                      .+|+|||+|+.|+.+|..|+++|.+|+++++. .+...                                   .++    
T Consensus        27 ~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~-~~GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~  105 (484)
T 3o0h_A           27 FDLFVIGSGSGGVRAARLAGALGKRVAIAEEY-RIGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYADPIFNWEKL  105 (484)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTBCCCCCEECHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHhCcCEEEEEeCC-CCCCceeccCccccHHHHHHHHHHHHHHHHHhCCcccCCCccCHHHH
Confidence            58999999999999999999999999999984 21100                                   000    


Q ss_pred             --------HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeC-CCcEEecCEEEEccCCcCC
Q 014997          175 --------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       175 --------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~-~g~~i~~D~vi~a~G~~p~  234 (414)
                              ..+...+...+++.||+++.+ .+..+..   .   .+.+. +++.+.+|.+|+|+|.+|.
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~i~~---~---~v~v~~~~~~~~~d~lviAtG~~p~  167 (484)
T 3o0h_A          106 VAAKNKEISRLEGLYREGLQNSNVHIYES-RAVFVDE---H---TLELSVTGERISAEKILIATGAKIV  167 (484)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEES-CEEEEET---T---EEEETTTCCEEEEEEEEECCCEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEeeC---C---EEEEecCCeEEEeCEEEEccCCCcc
Confidence                    122334556677889999987 3445542   1   45565 7789999999999999886

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.04  E-value=3.1e-05  Score=77.75  Aligned_cols=100  Identities=18%  Similarity=0.252  Sum_probs=76.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc----------------------c------------------
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------R------------------  171 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~----------------------~------------------  171 (414)
                      ...+|+|||+|+.|+-+|..|++.|.+|+|+++.+.+..                      .                  
T Consensus        11 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~   90 (499)
T 2qa2_A           11 SDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGGRPVD   90 (499)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETTEEEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceecceecc
Confidence            446899999999999999999999999999997632200                      0                  


Q ss_pred             ------------cc-CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCc---EEecCEEEEccCCcC
Q 014997          172 ------------LF-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS---TIDADTIVIGIGAKP  233 (414)
Q Consensus       172 ------------~~-~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~---~i~~D~vi~a~G~~p  233 (414)
                                  .+ ...+.+.+.+.+++.|++++.++++++++.++++ + .+.+.++.   ++.+|.||.|.|...
T Consensus        91 ~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v-~v~~~~~~g~~~~~a~~vVgADG~~S  166 (499)
T 2qa2_A           91 FGVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDH-V-VVEVEGPDGPRSLTTRYVVGCDGGRS  166 (499)
T ss_dssp             GGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSC-E-EEEEECSSCEEEEEEEEEEECCCTTC
T ss_pred             cccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCE-E-EEEEEcCCCcEEEEeCEEEEccCccc
Confidence                        00 0234556677778889999999999999876554 3 46666664   799999999999865

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.03  E-value=1.3e-05  Score=79.84  Aligned_cols=99  Identities=25%  Similarity=0.340  Sum_probs=70.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccc------------------------------------cCH-
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------------------------------------FTP-  175 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~------------------------------------~~~-  175 (414)
                      ..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+...+                                    ++. 
T Consensus         6 ~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   85 (470)
T 1dxl_A            6 ENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDLA   85 (470)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEECHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccCCCccCHH
Confidence            4679999999999999999999999999999986431000                                    010 


Q ss_pred             H-----------HHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCC--cEEecCEEEEccCCcCCCh
Q 014997          176 S-----------LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       176 ~-----------~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~  236 (414)
                      .           +...+.+.+++.||+++.++.+. +.   .. ...+.+.+|  +++.+|.+|+|+|.+|...
T Consensus        86 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~~---~~-~~~v~~~~G~~~~i~~d~lIiAtGs~p~~p  154 (470)
T 1dxl_A           86 AMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF-VS---PS-EISVDTIEGENTVVKGKHIIIATGSDVKSL  154 (470)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEE-EE---TT-EEEECCSSSCCEEEECSEEEECCCEEECCB
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE-ec---CC-EEEEEeCCCceEEEEcCEEEECCCCCCCCC
Confidence            0           11123445667899999988653 43   12 234556677  6899999999999988643

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.03  E-value=2.2e-05  Score=78.12  Aligned_cols=98  Identities=24%  Similarity=0.347  Sum_probs=68.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc---------------------------cccc---------cC-H
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL---------------------------LQRL---------FT-P  175 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~---------------------------l~~~---------~~-~  175 (414)
                      ..+|+|||+|+.|+.+|..|++.|.+|+++++.. +                           .+..         .+ .
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~-~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   82 (467)
T 1zk7_A            4 PVQVAVIGSGGAAMAAALKAVEQGAQVTLIERGT-IGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDRS   82 (467)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-TTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTTTSCCCCCCCCHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC-CCccccCCCccchHHHHHHHHHHHHHhhhhhcCCccCCCCccCHH
Confidence            4689999999999999999999999999999873 1                           0100         01 1


Q ss_pred             HHH-------HH-----HHHHHHhC-CcEEEcCceEEEEEecCCCcEEEEEeCCC--cEEecCEEEEccCCcCCCh
Q 014997          176 SLA-------QR-----YEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       176 ~~~-------~~-----~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~  236 (414)
                      .+.       ..     ..+.+++. ||+++.+. +..+..   + ...+.+.+|  +++.+|.+|+|+|.+|...
T Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~-~~~~~~---~-~~~v~~~~g~~~~~~~d~lviAtGs~p~~p  153 (467)
T 1zk7_A           83 KLLAQQQARVDELRHAKYEGILGGNPAITVVHGE-ARFKDD---Q-SLTVRLNEGGERVVMFDRCLVATGASPAVP  153 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEEE-EEEEET---T-EEEEEETTSSEEEEECSEEEECCCEEECCC
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEEE-EEEccC---C-EEEEEeCCCceEEEEeCEEEEeCCCCCCCC
Confidence            111       11     12345566 99998874 555542   2 235667788  6799999999999987643

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.01  E-value=2e-05  Score=78.40  Aligned_cols=95  Identities=24%  Similarity=0.462  Sum_probs=67.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc-----------------------------------ccC-H-
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----------------------------------LFT-P-  175 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----------------------------------~~~-~-  175 (414)
                      ..+|+|||+|+.|+.+|..|++.|.+|+++++.. +...                                   .++ + 
T Consensus         4 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~-~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   82 (463)
T 2r9z_A            4 HFDLIAIGGGSGGLAVAEKAAAFGKRVALIESKA-LGGTCVNVGCVPKKVMWYASHLAEAVRDAPGFGVQASGGTLDWPR   82 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTBCCC---CCHHH
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCCC-CCCcCcCcCchhHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHHH
Confidence            3579999999999999999999999999999873 2100                                   000 0 


Q ss_pred             ----------HHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCCh
Q 014997          176 ----------SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       176 ----------~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  236 (414)
                                .+...+.+.+++.||+++.+. +..+..   .   .|.+ +|+++.+|.+|+|+|.+|...
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~i~~---~---~v~~-~g~~~~~d~lviAtGs~p~~p  145 (463)
T 2r9z_A           83 LVAGRDRYIGAINSFWDGYVERLGITRVDGH-ARFVDA---H---TIEV-EGQRLSADHIVIATGGRPIVP  145 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCEEEESC-EEEEET---T---EEEE-TTEEEEEEEEEECCCEEECCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCEEEEeE-EEEccC---C---EEEE-CCEEEEcCEEEECCCCCCCCC
Confidence                      111223345577899999885 344432   2   3455 677899999999999988643

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=98.01  E-value=4.1e-05  Score=77.03  Aligned_cols=58  Identities=19%  Similarity=0.321  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCC-Cc--EEecC-EEEEccCCcC
Q 014997          176 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED-GS--TIDAD-TIVIGIGAKP  233 (414)
Q Consensus       176 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~-g~--~i~~D-~vi~a~G~~p  233 (414)
                      .+...+.+.+++.|+++++++.++++..++++++..|...+ ++  ++.+| .||+|+|-..
T Consensus       203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~  264 (510)
T 4at0_A          203 MLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSFA  264 (510)
T ss_dssp             HHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCCT
T ss_pred             HHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCChh
Confidence            34555666777889999999999999876567777776643 32  58996 9999999754

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.01  E-value=2e-05  Score=78.05  Aligned_cols=97  Identities=25%  Similarity=0.251  Sum_probs=69.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccc-----------------------------------cCH-H-
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-----------------------------------FTP-S-  176 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~-----------------------------------~~~-~-  176 (414)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++. .+...+                                   .+. . 
T Consensus         4 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   82 (455)
T 1ebd_A            4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFAKV   82 (455)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCcccCCCccCHHHH
Confidence            46999999999999999999999999999987 221000                                   010 0 


Q ss_pred             ----------HHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCC-cEEecCEEEEccCCcCCCh
Q 014997          177 ----------LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-STIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       177 ----------~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g-~~i~~D~vi~a~G~~p~~~  236 (414)
                                +...+.+.+++.||+++.++.+. +.   .+. ..+.+.+| +++.+|.+|+|+|.+|...
T Consensus        83 ~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-id---~~~-v~V~~~~G~~~i~~d~lViATGs~p~~~  148 (455)
T 1ebd_A           83 QEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYF-VD---ANT-VRVVNGDSAQTYTFKNAIIATGSRPIEL  148 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEE-EE---TTE-EEEEETTEEEEEECSEEEECCCEEECCB
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE-cc---CCe-EEEEeCCCcEEEEeCEEEEecCCCCCCC
Confidence                      12223456778899999987543 43   222 35666777 6899999999999988643

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.00  E-value=1.2e-05  Score=77.81  Aligned_cols=98  Identities=16%  Similarity=0.290  Sum_probs=70.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCC--CcEEEEeeCCcc------cccccC-----HHHHH-HHHHHHHhCCcEEEcCceE
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHL------LQRLFT-----PSLAQ-RYEQLYQQNGVKFVKGASI  198 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~------l~~~~~-----~~~~~-~~~~~l~~~gv~i~~~~~v  198 (414)
                      ..+|+|||+|+.|+.+|..|++.|  .+|+++++.+..      ++..+.     .++.. .+.+.+++.|++++.++.+
T Consensus         4 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v   83 (384)
T 2v3a_A            4 RAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKPMLSTGFSKNKDADGLAMAEPGAMAEQLNARILTHTRV   83 (384)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSCCCEECGGGGGGTTTTTCCHHHHEEECHHHHHHHTTCEEECSCCC
T ss_pred             CCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCCCCccCcccccHHHhCCCCHHHhhccCHHHHHHhCCcEEEeCCEE
Confidence            367999999999999999999998  568999876421      111111     11111 2345567889999999999


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCC
Q 014997          199 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  235 (414)
Q Consensus       199 ~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~  235 (414)
                      ..+.... .   .+.+.+ .++.+|.+|+|+|.+|..
T Consensus        84 ~~i~~~~-~---~v~~~~-~~~~~d~lviAtG~~p~~  115 (384)
T 2v3a_A           84 TGIDPGH-Q---RIWIGE-EEVRYRDLVLAWGAEPIR  115 (384)
T ss_dssp             CEEEGGG-T---EEEETT-EEEECSEEEECCCEEECC
T ss_pred             EEEECCC-C---EEEECC-cEEECCEEEEeCCCCcCC
Confidence            8887532 2   455554 479999999999998864

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.00  E-value=1.6e-05  Score=79.41  Aligned_cols=96  Identities=27%  Similarity=0.393  Sum_probs=68.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc-------------------------------------ccCH-
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------------------------------------LFTP-  175 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-------------------------------------~~~~-  175 (414)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++.+.+-..                                     .++. 
T Consensus         6 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~   85 (478)
T 1v59_A            6 HDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKINVA   85 (478)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEEECHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCccCHH
Confidence            47999999999999999999999999999986433100                                     0010 


Q ss_pred             H-----------HHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCC--cE------EecCEEEEccCCcCC
Q 014997          176 S-----------LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--ST------IDADTIVIGIGAKPT  234 (414)
Q Consensus       176 ~-----------~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g--~~------i~~D~vi~a~G~~p~  234 (414)
                      .           +...+.+.+++.||+++.++.+..     +.....+.+.+|  ++      +.+|.+|+|+|.+|.
T Consensus        86 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~-----~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtGs~p~  158 (478)
T 1v59_A           86 NFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFE-----DETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVT  158 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEES-----SSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEc-----cCCeEEEEecCCCcccccccceEEeCEEEECcCCCCC
Confidence            0           111234556788999999876531     222235666676  56      999999999999884

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.00  E-value=4.3e-05  Score=72.36  Aligned_cols=138  Identities=20%  Similarity=0.257  Sum_probs=89.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhC--CCcEEEEeeCCccccc---------------------------------c----c
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQR---------------------------------L----F  173 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~l~~---------------------------------~----~  173 (414)
                      ...|+|||+|+.|+.+|..|+++  |.+|+++++.+.+-..                                 .    .
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~G~~~~~~~  158 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGVPYEDEGDYVVVKH  158 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESC
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhhhcchHHHHHHHHcCCcccccCCeEEEec
Confidence            35899999999999999999997  9999999987533100                                 0    0


Q ss_pred             CHHHHHHHHHHHHh-CCcEEEcCceEEEEEecCC----------------C--cEEEEEeC--------------CCcEE
Q 014997          174 TPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSD----------------G--RVAAVKLE--------------DGSTI  220 (414)
Q Consensus       174 ~~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~----------------~--~~~~v~~~--------------~g~~i  220 (414)
                      ..++.+.+.+.+++ .|++++.++.+.++..+++                +  ++..|...              ++.++
T Consensus       159 ~~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i  238 (344)
T 3jsk_A          159 AALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTI  238 (344)
T ss_dssp             HHHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBCEEE
T ss_pred             HHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCceEE
Confidence            12333555566666 5999999999998865432                2  55555541              23479


Q ss_pred             ecCEEEEccCCcCCC-----hhhhhcCCccc-CC--CEE--------EcCCCCCCCCcEEEEccccc
Q 014997          221 DADTIVIGIGAKPTV-----SPFERVGLNSS-VG--GIQ--------VDGQFRTRMPGIFAIGDVAA  271 (414)
Q Consensus       221 ~~D~vi~a~G~~p~~-----~~l~~~gl~~~-~g--~i~--------vd~~~~t~~~~IyA~GD~a~  271 (414)
                      .++.||.|+|.....     ..+.+.++... .|  ...        |+.+-+ -+|++|++|=.+.
T Consensus       239 ~Ak~VV~ATG~~s~v~~~~~~~l~~~~~~~~~~g~~~~~~~~~e~~~v~~t~~-v~~gl~~~gm~~~  304 (344)
T 3jsk_A          239 NAPVIISTTGHDGPFGAFSVKRLVSMKQMERLNGMRGLDMQSAEDAIVNNTRE-IVPGLIVGGMELS  304 (344)
T ss_dssp             ECSEEEECCCSSSSSSCHHHHHHHHTTSSSCCCCCEEECHHHHHHHHHHTCEE-EETTEEECGGGHH
T ss_pred             EcCEEEECCCCCchhhHHHHHHHhhcCcccccCCCcccccccchhhhcccCce-EcCCEEEechhhH
Confidence            999999999987652     12334444310 11  111        111111 3699999997765

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.00  E-value=2.1e-05  Score=78.43  Aligned_cols=98  Identities=26%  Similarity=0.293  Sum_probs=69.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccc-------------------------------------cC-H
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-------------------------------------FT-P  175 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~-------------------------------------~~-~  175 (414)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++.+.+-..+                                     ++ +
T Consensus         7 ~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   86 (474)
T 1zmd_A            7 ADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMSEVRLNLD   86 (474)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEESCEEECHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccccCCCccCHH
Confidence            479999999999999999999999999999986431000                                     00 0


Q ss_pred             H-----------HHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCC-C-cEEecCEEEEccCCcCCCh
Q 014997          176 S-----------LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED-G-STIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       176 ~-----------~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~-g-~~i~~D~vi~a~G~~p~~~  236 (414)
                      .           +...+.+.+++.||+++.++.+ .+.   .+. ..|.+.+ | +++.+|.+|+|+|.+|...
T Consensus        87 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~-~~~---~~~-~~v~~~~gg~~~~~~d~lViAtGs~p~~p  155 (474)
T 1zmd_A           87 KMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGK-ITG---KNQ-VTATKADGGTQVIDTKNILIATGSEVTPF  155 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEE-EEE---TTE-EEEECTTSCEEEEEEEEEEECCCEEECCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-Eec---CCE-EEEEecCCCcEEEEeCEEEECCCCCCCCC
Confidence            0           1112345667889999988643 332   222 3566666 4 5799999999999988643

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=97.99  E-value=2.1e-05  Score=76.70  Aligned_cols=99  Identities=18%  Similarity=0.245  Sum_probs=72.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCc-EEEEeeCCccccc----cc----------------------------------
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLLQR----LF----------------------------------  173 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~-Vtlv~~~~~~l~~----~~----------------------------------  173 (414)
                      ..+|+|||||+.|+.+|..|++.|.+ |+|+++.+.+.+.    .+                                  
T Consensus         4 ~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~g   83 (410)
T 3c96_A            4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSG   83 (410)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeEEEEChHHHHHHHHCCChHHHHhhCCCcceEEEEcCCC
Confidence            35899999999999999999999999 9999987542100    00                                  


Q ss_pred             ----------------------CHHHHHHHHHHHHh-CC-cEEEcCceEEEEEecCCCcEEEEEeCC---C--cEEecCE
Q 014997          174 ----------------------TPSLAQRYEQLYQQ-NG-VKFVKGASIKNLEAGSDGRVAAVKLED---G--STIDADT  224 (414)
Q Consensus       174 ----------------------~~~~~~~~~~~l~~-~g-v~i~~~~~v~~i~~~~~~~~~~v~~~~---g--~~i~~D~  224 (414)
                                            ...+.+.+.+.+++ .| ++++.+++|+++.. +++.  .+.+.+   |  +++.+|.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~v--~v~~~~~~~g~~~~~~ad~  160 (410)
T 3c96_A           84 ATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE-RDGR--VLIGARDGHGKPQALGADV  160 (410)
T ss_dssp             CEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ETTE--EEEEEEETTSCEEEEEESE
T ss_pred             CEEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEec-CCcc--EEEEecCCCCCceEEecCE
Confidence                                  01334455555655 35 68999999999986 4442  355544   6  5799999


Q ss_pred             EEEccCCcCC
Q 014997          225 IVIGIGAKPT  234 (414)
Q Consensus       225 vi~a~G~~p~  234 (414)
                      ||.|.|....
T Consensus       161 vV~AdG~~S~  170 (410)
T 3c96_A          161 LVGADGIHSA  170 (410)
T ss_dssp             EEECCCTTCH
T ss_pred             EEECCCccch
Confidence            9999998764

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=97.98  E-value=3.5e-05  Score=77.32  Aligned_cols=101  Identities=21%  Similarity=0.252  Sum_probs=76.5

Q ss_pred             cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc----------------------ccc----------------
Q 014997          131 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL----------------------QRL----------------  172 (414)
Q Consensus       131 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l----------------------~~~----------------  172 (414)
                      .+..+|+|||+|+.|+-+|..|++.|.+|+|+++.+.+.                      ...                
T Consensus         9 ~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~   88 (500)
T 2qa1_A            9 RSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHFGGLPI   88 (500)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEETTEEE
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhccccccccccceec
Confidence            345689999999999999999999999999999763220                      000                


Q ss_pred             ----c-----------CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCc---EEecCEEEEccCCcC
Q 014997          173 ----F-----------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS---TIDADTIVIGIGAKP  233 (414)
Q Consensus       173 ----~-----------~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~---~i~~D~vi~a~G~~p  233 (414)
                          +           ...+.+.+.+.+++.|++++.+++|++++.++++ + .+.+.++.   ++.+|.||.|.|...
T Consensus        89 ~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v-~v~~~~~~g~~~~~a~~vVgADG~~S  165 (500)
T 2qa1_A           89 DFGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAG-V-TVEVRGPEGKHTLRAAYLVGCDGGRS  165 (500)
T ss_dssp             EGGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTE-E-EEEEEETTEEEEEEESEEEECCCTTC
T ss_pred             ccccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCe-E-EEEEEcCCCCEEEEeCEEEECCCcch
Confidence                0           0234555667777889999999999999876443 3 46666664   799999999999865

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=97.98  E-value=6.7e-05  Score=76.25  Aligned_cols=55  Identities=20%  Similarity=0.398  Sum_probs=44.9

Q ss_pred             HHHHHHHHhC-CcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997          179 QRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       179 ~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (414)
                      +.+.+.+++. |++++.+ +|+++..++++.+..|.+.+|+++.+|.||.|+|....
T Consensus       198 ~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S~  253 (550)
T 2e4g_A          198 DFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGL  253 (550)
T ss_dssp             HHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGCC
T ss_pred             HHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCchh
Confidence            3345555667 9999999 99999876567777888999988999999999998764

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.98  E-value=8.1e-06  Score=81.87  Aligned_cols=100  Identities=17%  Similarity=0.208  Sum_probs=70.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc-------c--cC---HHHHHHHHHHHHhCCcEEEcCceEEE
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------L--FT---PSLAQRYEQLYQQNGVKFVKGASIKN  200 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-------~--~~---~~~~~~~~~~l~~~gv~i~~~~~v~~  200 (414)
                      ..+|+|||+|+.|+.+|..|++. .+|+++++.+.+...       .  ++   .++...+.+.+ +.|++++.++.+.+
T Consensus       108 ~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l-~~~v~~~~~~~v~~  185 (493)
T 1y56_A          108 VVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKL-NENTKIYLETSALG  185 (493)
T ss_dssp             EESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTC-CTTEEEETTEEECC
T ss_pred             cCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHH-hcCCEEEcCCEEEE
Confidence            35799999999999999999999 999999988754111       0  11   12223333333 56999999999988


Q ss_pred             EEecCCCcEEEEEeCCCc--EEecCEEEEccCCcCCC
Q 014997          201 LEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTV  235 (414)
Q Consensus       201 i~~~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~~  235 (414)
                      +....+ .+.....++++  .+.+|.+|+|+|..|..
T Consensus       186 i~~~~~-~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~  221 (493)
T 1y56_A          186 VFDKGE-YFLVPVVRGDKLIEILAKRVVLATGAIDST  221 (493)
T ss_dssp             CEECSS-SEEEEEEETTEEEEEEESCEEECCCEEECC
T ss_pred             EEcCCc-EEEEEEecCCeEEEEECCEEEECCCCCccC
Confidence            875432 22222224453  69999999999998764

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=97.98  E-value=3.7e-05  Score=76.13  Aligned_cols=94  Identities=26%  Similarity=0.460  Sum_probs=66.7

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccc------------------------------------cC---
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------------------------------------FT---  174 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~------------------------------------~~---  174 (414)
                      .+|+|||||+.|+.+|..|++.|.+|+++++.. +...+                                    ++   
T Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~-~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~   83 (450)
T 1ges_A            5 YDYIAIGGGSGGIASINRAAMYGQKCALIEAKE-LGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWET   83 (450)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEcCCC-CCCcccccCccChHHHHHHHHHHHHHHHHHHhcCccCCCCccCHHH
Confidence            579999999999999999999999999999873 21000                                    00   


Q ss_pred             ---------HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCCh
Q 014997          175 ---------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       175 ---------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  236 (414)
                               ..+...+...+++.||+++.+.. ..+..   .   .+.+ +|+++.+|.+|+|+|.+|...
T Consensus        84 l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~-~~i~~---~---~v~~-~g~~~~~d~lviAtGs~p~~p  146 (450)
T 1ges_A           84 LIASRTAYIDRIHTSYENVLGKNNVDVIKGFA-RFVDA---K---TLEV-NGETITADHILIATGGRPSHP  146 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCEEEESCC-EEEET---T---EEEE-TTEEEEEEEEEECCCEEECCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEE-EEecC---C---EEEE-CCEEEEeCEEEECCCCCCCCC
Confidence                     01112233445778999998864 44432   2   3455 677899999999999987643

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=97.96  E-value=1.7e-05  Score=78.55  Aligned_cols=95  Identities=23%  Similarity=0.328  Sum_probs=66.3

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc----------------------------------ccCH-H---
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------------LFTP-S---  176 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------------~~~~-~---  176 (414)
                      +|+|||+|+.|+.+|..|++.|.+|+++++.+.+-..                                  ..+. .   
T Consensus         3 dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~   82 (455)
T 2yqu_A            3 DLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAKKGLLGAKVKGVELDLPALMA   82 (455)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHCCTTEEECCEEECHHHHHH
T ss_pred             CEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCCCccceecchhHHHHHHHHHHHHHHhhhcCCcccCCCccCHHHHHH
Confidence            6899999999999999999999999999988643100                                  0010 1   


Q ss_pred             --------HHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCC
Q 014997          177 --------LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  235 (414)
Q Consensus       177 --------~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~  235 (414)
                              +...+.+.+++.||+++.+..+. +  + .. ...+.+ +|+++.+|.+|+|+|.+|..
T Consensus        83 ~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~-i--~-~~-~~~v~~-~g~~~~~d~lviAtG~~p~~  143 (455)
T 2yqu_A           83 HKDKVVQANTQGVEFLFKKNGIARHQGTARF-L--S-ER-KVLVEE-TGEELEARYILIATGSAPLI  143 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCEEEESCEEE-S--S-SS-EEEETT-TCCEEEEEEEEECCCEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE-e--c-CC-eEEEee-CCEEEEecEEEECCCCCCCC
Confidence                    11123455677899999887432 2  2 22 223434 67789999999999998864

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=97.96  E-value=2.4e-05  Score=77.77  Aligned_cols=93  Identities=19%  Similarity=0.288  Sum_probs=66.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc----------------------------------ccCH-HH-
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------------LFTP-SL-  177 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------------~~~~-~~-  177 (414)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++.+ +-..                                  ..+. .+ 
T Consensus         7 ~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~-~GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   85 (464)
T 2eq6_A            7 YDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE-VGGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLKAKPELDLKKLG   85 (464)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHHHHGGGTEECCCEECHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC-CCCCCCCcChHHHHHHHHHHHHHHHHHhHHhcCCCCCCCcCHHHHH
Confidence            579999999999999999999999999999875 1000                                  0010 01 


Q ss_pred             ----------HHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCC
Q 014997          178 ----------AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  235 (414)
Q Consensus       178 ----------~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~  235 (414)
                                ...+...+++.||+++.++.+. +.   ..   .+.+. |+++.+|.+|+|+|.+|..
T Consensus        86 ~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~~---~~---~v~v~-g~~~~~d~lViATGs~p~~  145 (464)
T 2eq6_A           86 GWRDQVVKKLTGGVGTLLKGNGVELLRGFARL-VG---PK---EVEVG-GERYGAKSLILATGSEPLE  145 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEEEESCEEE-EE---TT---EEEET-TEEEEEEEEEECCCEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEE-cc---CC---EEEEc-cEEEEeCEEEEcCCCCCCC
Confidence                      0112345677899999987543 43   12   45555 6789999999999998864

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=97.95  E-value=1.5e-05  Score=77.76  Aligned_cols=106  Identities=21%  Similarity=0.206  Sum_probs=73.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhC--CCcEEEEeeCC------------cc-cccccC------------------------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPEN------------HL-LQRLFT------------------------  174 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~--g~~Vtlv~~~~------------~~-l~~~~~------------------------  174 (414)
                      .+|+|||+|.+|+-+|..|+++  |.+|+|+++..            .+ .+..+.                        
T Consensus        37 ~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~~~~s~~~~g~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  116 (405)
T 3c4n_A           37 FDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEEGATILAPGVWTAQDIPAGQEAQAEWTREQLLGALGSGKTL  116 (405)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSSCTTSHHHHCCCEECGGGCCTTCHHHHHHHHHHHHTGGGSSCCC
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCCCcchhccCCcceeecccCCchHHHHHHHHHHHHHHHhCCCCCC
Confidence            5799999999999999999999  99999999753            12 000000                        


Q ss_pred             -------------------------------------------------------HHHHHHHHHHHHhCCcEEEcCceEE
Q 014997          175 -------------------------------------------------------PSLAQRYEQLYQQNGVKFVKGASIK  199 (414)
Q Consensus       175 -------------------------------------------------------~~~~~~~~~~l~~~gv~i~~~~~v~  199 (414)
                                                                             ..+...+.+.+++.|++++.+++|+
T Consensus       117 ~~~~~g~l~~~~~~~~~g~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~v~~~~l~~~L~~~~~~~Gv~i~~~~~v~  196 (405)
T 3c4n_A          117 EVEDRPLLHLLPAGEGSGLTPTLDALADFPEALALLDPARLPVARVDPRALTYRPGSLALLAAQQAIGQGAGLLLNTRAE  196 (405)
T ss_dssp             CEEECCEEEEESSCCSSSCEEHHHHTTTCHHHHTTSCTTTSCEEEEETTCEEECHHHHHHHHHHHHHTTTCEEECSCEEE
T ss_pred             cEEeeCeEEehhhHhHCCCCCHHHHHHhCCCccccccCCcceEEEEcCCCEEEcHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence                                                                   1244556667788899999999998


Q ss_pred             ---------EEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhh-hcCC
Q 014997          200 ---------NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE-RVGL  243 (414)
Q Consensus       200 ---------~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~-~~gl  243 (414)
                               ++..+ ++.+ .|.+.+| ++.||.||+|+|.... .+++ ..++
T Consensus       197 ~~~g~~~~~~i~~~-~~~v-~v~~~~g-~i~a~~VV~A~G~~s~-~l~~~~~g~  246 (405)
T 3c4n_A          197 LVPGGVRLHRLTVT-NTHQ-IVVHETR-QIRAGVIIVAAGAAGP-ALVEQGLGL  246 (405)
T ss_dssp             EETTEEEEECBCC---------CBCCE-EEEEEEEEECCGGGHH-HHHHHHHCC
T ss_pred             eccccccccceEee-CCeE-EEEECCc-EEECCEEEECCCccHH-HHHHHhcCC
Confidence                     77643 3333 5666666 7999999999998643 3444 4443

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=97.95  E-value=6.6e-05  Score=72.74  Aligned_cols=59  Identities=25%  Similarity=0.400  Sum_probs=42.3

Q ss_pred             HHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhcC
Q 014997          180 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG  242 (414)
Q Consensus       180 ~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~g  242 (414)
                      .+.+.+++.|++++.++.|+++..+++ .+ .+.+++| ++.+|.||+|+|.... .+++..+
T Consensus       158 ~l~~~a~~~Gv~i~~~~~V~~i~~~~~-~v-~v~t~~g-~i~a~~VV~A~G~~s~-~l~~~~g  216 (397)
T 2oln_A          158 ALFTLAQAAGATLRAGETVTELVPDAD-GV-SVTTDRG-TYRAGKVVLACGPYTN-DLLEPLG  216 (397)
T ss_dssp             HHHHHHHHTTCEEEESCCEEEEEEETT-EE-EEEESSC-EEEEEEEEECCGGGHH-HHHGGGT
T ss_pred             HHHHHHHHcCCEEECCCEEEEEEEcCC-eE-EEEECCC-EEEcCEEEEcCCcChH-HHhhhcC
Confidence            344556778999999999999986533 33 4666665 7999999999997643 3444444

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.94  E-value=3.8e-06  Score=83.49  Aligned_cols=91  Identities=14%  Similarity=0.185  Sum_probs=69.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCC--CcEEEEeeCCccc--------ccc-cCHHHHHHHHHHHHhCCcEEEcCceEEE
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLL--------QRL-FTPSLAQRYEQLYQQNGVKFVKGASIKN  200 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l--------~~~-~~~~~~~~~~~~l~~~gv~i~~~~~v~~  200 (414)
                      ..++|+|||+|+.|+.+|..|+++|  .+|+++++.+.+.        +.. ...++...+.+.+++.||+++.++.+. 
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~-   83 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVG-   83 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBT-
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeecccCCCCccHHHHHHHHHHHHHhCCcEEEeeeEEe-
Confidence            3578999999999999999999988  9999999987654        111 123566677788888999999987652 


Q ss_pred             EEecCCCcEEEEEeCCCcEEecCEEEEccCCcC
Q 014997          201 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  233 (414)
Q Consensus       201 i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p  233 (414)
                            .   .|.+.+. .+.+|.||+|+|..|
T Consensus        84 ------~---~V~~~~~-~~~~d~lVlAtGs~~  106 (460)
T 1cjc_A           84 ------R---DVTVQEL-QDAYHAVVLSYGAED  106 (460)
T ss_dssp             ------T---TBCHHHH-HHHSSEEEECCCCCE
T ss_pred             ------e---EEEeccc-eEEcCEEEEecCcCC
Confidence                  1   1233332 478999999999885

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.94  E-value=2.7e-05  Score=77.72  Aligned_cols=98  Identities=23%  Similarity=0.321  Sum_probs=68.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc-----------------------------------------c
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-----------------------------------------R  171 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-----------------------------------------~  171 (414)
                      ..+|+|||||+.|+.+|..|++.|.+|+++++.. +..                                         .
T Consensus        11 ~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~~-~GG~~~n~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   89 (479)
T 2hqm_A           11 HYDYLVIGGGSGGVASARRAASYGAKTLLVEAKA-LGGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPLDKEHL   89 (479)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTSCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTBSTTSCCSGGGC
T ss_pred             cCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCCC-cCCcCcccCcHHHHHHHHHHHHHHHHHhHHhcCcccccccccccC
Confidence            3579999999999999999999999999999863 100                                         0


Q ss_pred             ccCH------------HHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCc--EEecCEEEEccCCcCCCh
Q 014997          172 LFTP------------SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       172 ~~~~------------~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~~~  236 (414)
                      .++.            .+...+.+.+++.||+++.+. +..+.   ... ..+.+.+|+  ++.+|.+|+|+|.+|...
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~i~---~~~-~~v~~~~g~~~~~~~d~lviAtGs~p~~p  163 (479)
T 2hqm_A           90 TFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGW-ARFNK---DGN-VEVQKRDNTTEVYSANHILVATGGKAIFP  163 (479)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEE-EEECT---TSC-EEEEESSSCCEEEEEEEEEECCCEEECCC
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEee---CCE-EEEEeCCCcEEEEEeCEEEEcCCCCCCCC
Confidence            0000            111223455677899999874 44442   222 356667776  899999999999988644

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.93  E-value=3.2e-05  Score=76.84  Aligned_cols=96  Identities=24%  Similarity=0.285  Sum_probs=68.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccc-----------------------------------cCH---
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-----------------------------------FTP---  175 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~-----------------------------------~~~---  175 (414)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++.. +...+                                   ++.   
T Consensus         4 ~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~~-~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   82 (464)
T 2a8x_A            4 YDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPKY-WGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISGEVTFDYGIA   82 (464)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEEECCEECHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC-CCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCccCHHHH
Confidence            369999999999999999999999999999872 21000                                   000   


Q ss_pred             ---------HHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCC--cEEecCEEEEccCCcCCC
Q 014997          176 ---------SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTV  235 (414)
Q Consensus       176 ---------~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~  235 (414)
                               .+...+.+.+++.||+++.++.+. +  + .. ...+.+.+|  +++.+|.+|+|+|.+|..
T Consensus        83 ~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~-i--d-~~-~v~V~~~~G~~~~~~~d~lViAtG~~~~~  148 (464)
T 2a8x_A           83 YDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTF-A--D-AN-TLLVDLNDGGTESVTFDNAIIATGSSTRL  148 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEE-S--S-SS-EEEEEETTSCCEEEEEEEEEECCCEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE-e--c-CC-eEEEEeCCCceEEEEcCEEEECCCCCCCC
Confidence                     011223456677899999887543 2  2 22 235667777  689999999999998864

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=97.93  E-value=4.6e-05  Score=76.26  Aligned_cols=97  Identities=20%  Similarity=0.272  Sum_probs=67.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccc---------------------------c---------C--
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL---------------------------F---------T--  174 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~---------------------------~---------~--  174 (414)
                      ..+|+|||||+.|+.+|..|+++|.+|+++++.+.+-..+                           +         +  
T Consensus        25 ~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  104 (491)
T 3urh_A           25 AYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVANPKLNLQ  104 (491)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEECCCCEECHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcccCCCccCHH
Confidence            3689999999999999999999999999999865431100                           0         0  


Q ss_pred             ----------HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCC--cEEecCEEEEccCCcCC
Q 014997          175 ----------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPT  234 (414)
Q Consensus       175 ----------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~  234 (414)
                                ..+...+...+++.+|+++.+.... +    +.....+...+|  .++.+|.+|+|+|.+|.
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~-~----~~~~~~v~~~~g~~~~~~~d~lViATGs~p~  171 (491)
T 3urh_A          105 KMMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGKV-L----GQGKVSVTNEKGEEQVLEAKNVVIATGSDVA  171 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEE-C----SSSEEEEECTTSCEEEEECSEEEECCCEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE-e----cCCEEEEEeCCCceEEEEeCEEEEccCCCCC
Confidence                      0111223445677899998875321 2    122235666777  57999999999999874

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.93  E-value=3.4e-05  Score=76.59  Aligned_cols=93  Identities=19%  Similarity=0.291  Sum_probs=66.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc-------------------------------cc-------CH
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------------------------------LF-------TP  175 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-------------------------------~~-------~~  175 (414)
                      .+++|||+|+.|+.+|..|++.|.+|+++++. .+...                               .+       +.
T Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~-~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   84 (458)
T 1lvl_A            6 TTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ-ALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPRLDI   84 (458)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCCCH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEccC-CCCCcCCCcCcHhHHHHHHHHHHHHHHhhcccccccCcccCCCccCH
Confidence            57999999999999999999999999999984 32100                               00       00


Q ss_pred             -HH-----------HHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCC
Q 014997          176 -SL-----------AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  235 (414)
Q Consensus       176 -~~-----------~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~  235 (414)
                       .+           ...+.+.+++.||+++.++.+. +.   ..   .+.+++ +++.+|.+|+|+|.+|..
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~-~~---~~---~v~v~~-~~~~~d~lviATGs~p~~  148 (458)
T 1lvl_A           85 GQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKV-LD---GK---QVEVDG-QRIQCEHLLLATGSSSVE  148 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEE-EE---TT---EEEETT-EEEECSEEEECCCEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEE-cc---CC---EEEEee-EEEEeCEEEEeCCCCCCC
Confidence             11           1112356678899999987543 32   12   456655 679999999999998863

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=97.93  E-value=1.7e-05  Score=78.79  Aligned_cols=93  Identities=24%  Similarity=0.334  Sum_probs=66.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc-----------------------------------ccC----
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----------------------------------LFT----  174 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----------------------------------~~~----  174 (414)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++.. +-..                                   .++    
T Consensus         6 ~DVvVIGaG~aGl~aA~~la~~G~~V~liEk~~-~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   84 (463)
T 4dna_A            6 YDLFVIGGGSGGVRSGRLAAALGKKVAIAEEFR-YGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGESRFDWAKL   84 (463)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEECCCEECHHHH
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCEEEEEeCCC-CCCcccccCchhhHHHHHHHHHHHHHHHHHhcCcccCCCCcCHHHH
Confidence            479999999999999999999999999999842 1100                                   001    


Q ss_pred             --------HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEe-CCCcEEecCEEEEccCCcCC
Q 014997          175 --------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL-EDGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       175 --------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~-~~g~~i~~D~vi~a~G~~p~  234 (414)
                              ..+...+.+.+++.|++++.+. +..+.   ..   .+.+ .+++.+.+|.+|+|+|.+|.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~i~---~~---~v~~~~~~~~~~~d~lviAtG~~p~  146 (463)
T 4dna_A           85 VAAKEQEIARLEGLYRKGLANAGAEILDTR-AELAG---PN---TVKLLASGKTVTAERIVIAVGGHPS  146 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCEEEESC-EEESS---SS---EEEETTTTEEEEEEEEEECCCEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEee---CC---EEEEecCCeEEEeCEEEEecCCCcc
Confidence                    0222334555677799999873 33332   22   4555 57788999999999999886

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=97.92  E-value=6.1e-05  Score=80.42  Aligned_cols=62  Identities=26%  Similarity=0.347  Sum_probs=46.3

Q ss_pred             HHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhcC
Q 014997          178 AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG  242 (414)
Q Consensus       178 ~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~g  242 (414)
                      ...+.+.+++.|++++.++.|+++... ++.+..|.+.+| ++.||.||+|+|.... .+++..|
T Consensus       154 ~~~L~~~a~~~Gv~i~~~t~V~~i~~~-~~~v~~V~t~~G-~i~Ad~VV~AaG~~s~-~l~~~~g  215 (830)
T 1pj5_A          154 VQLLIKRTESAGVTYRGSTTVTGIEQS-GGRVTGVQTADG-VIPADIVVSCAGFWGA-KIGAMIG  215 (830)
T ss_dssp             HHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTE-EEECSEEEECCGGGHH-HHHHTTT
T ss_pred             HHHHHHHHHHcCCEEECCceEEEEEEe-CCEEEEEEECCc-EEECCEEEECCccchH-HHHHHhC
Confidence            344566678889999999999999864 455556778877 7999999999998652 3333333

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.92  E-value=4.4e-06  Score=91.13  Aligned_cols=93  Identities=20%  Similarity=0.264  Sum_probs=70.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCC-cEEEEeeCCcccc--------cccCHHHHHHHHHHHHhCCcEEEcCceEEEEEe
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHLLQ--------RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  203 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~l~--------~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~  203 (414)
                      +++|+|||+|+.|+.+|..|++.|. +|+++++.+.+..        ..++.+...+..+.+++.||++++++.+..   
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~~~ip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~---  263 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSE---  263 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBST---
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccccccCCcccCCHHHHHHHHHHHHHCCcEEEcccEecc---
Confidence            4689999999999999999999998 7999998765421        113445556666788999999999886621   


Q ss_pred             cCCCcEEEEEeCCCcEEecCEEEEccCC-cCC
Q 014997          204 GSDGRVAAVKLEDGSTIDADTIVIGIGA-KPT  234 (414)
Q Consensus       204 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~-~p~  234 (414)
                         .   .+.++++.++.+|.||+|+|. +|.
T Consensus       264 ---~---~v~~~~~~~~~~d~vvlAtGa~~p~  289 (1025)
T 1gte_A          264 ---N---EITLNTLKEEGYKAAFIGIGLPEPK  289 (1025)
T ss_dssp             ---T---SBCHHHHHHTTCCEEEECCCCCEEC
T ss_pred             ---c---eEEhhhcCccCCCEEEEecCCCCCC
Confidence               1   233444555789999999998 475

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=97.91  E-value=0.00011  Score=71.83  Aligned_cols=50  Identities=22%  Similarity=0.408  Sum_probs=39.8

Q ss_pred             HHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcC
Q 014997          182 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  233 (414)
Q Consensus       182 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p  233 (414)
                      .+.+++.|++|++++.|++|..+ ++.+..|.++ |+++.||.||+++|...
T Consensus       203 ~~~~~~~G~~i~~~~~V~~i~~~-~~~~~gv~~~-g~~~~ad~VV~a~~~~~  252 (425)
T 3ka7_A          203 ETVISANGGKIHTGQEVSKILIE-NGKAAGIIAD-DRIHDADLVISNLGHAA  252 (425)
T ss_dssp             HHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEET-TEEEECSEEEECSCHHH
T ss_pred             HHHHHHcCCEEEECCceeEEEEE-CCEEEEEEEC-CEEEECCEEEECCCHHH
Confidence            34556789999999999999865 4566557765 77899999999998754

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.91  E-value=1.5e-05  Score=80.15  Aligned_cols=95  Identities=22%  Similarity=0.385  Sum_probs=59.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc----------------------------------ccC-----
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------------LFT-----  174 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------------~~~-----  174 (414)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++.+ +...                                  .++     
T Consensus         3 ~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~-~GG~c~~~gc~P~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~   81 (500)
T 1onf_A            3 YDLIVIGGGSGGMAAARRAARHNAKVALVEKSR-LGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPLLV   81 (500)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-TTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHHHHH
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC-cCccccccCCcchHHHHHHHHHHHHHHhhHhcCCccCCccCHHHHH
Confidence            469999999999999999999999999999874 2000                                  000     


Q ss_pred             -------HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCC-------------CcEEecCEEEEccCCcCC
Q 014997          175 -------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED-------------GSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       175 -------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~-------------g~~i~~D~vi~a~G~~p~  234 (414)
                             ..+...+.+.+++.||+++.++.+ .+..   .   .+.+.+             ++++.+|.+|+|+|.+|.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~id~---~---~v~v~~~~~~~~~~~~~~~~~~~~~d~lViAtGs~p~  154 (500)
T 1onf_A           82 ERRDKYIQRLNNIYRQNLSKDKVDLYEGTAS-FLSE---N---RILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPV  154 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEEEESCCC-CC--------------------------------CBSSEEECCCCCBC
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCEEEEeEEE-EeeC---C---EEEEEeccccccccccCCCceEEEeCEEEECCCCCCC
Confidence                   111122345567889999988632 2321   1   233322             567999999999999887


Q ss_pred             Ch
Q 014997          235 VS  236 (414)
Q Consensus       235 ~~  236 (414)
                      ..
T Consensus       155 ~p  156 (500)
T 1onf_A          155 FP  156 (500)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=97.91  E-value=9.4e-05  Score=74.33  Aligned_cols=55  Identities=16%  Similarity=0.262  Sum_probs=45.2

Q ss_pred             HHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997          179 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       179 ~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (414)
                      ..+.+.+++.|++++.+ +|+++..++++.+..|.+.+|+++.+|.||.|.|....
T Consensus       177 ~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~  231 (511)
T 2weu_A          177 RYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGL  231 (511)
T ss_dssp             HHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCC
T ss_pred             HHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchH
Confidence            34555566789999999 89999876667777888999988999999999998754

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=97.90  E-value=2e-05  Score=78.71  Aligned_cols=97  Identities=24%  Similarity=0.253  Sum_probs=67.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc-----------------------------------ccCH-H-
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----------------------------------LFTP-S-  176 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----------------------------------~~~~-~-  176 (414)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++.+.+-..                                   .++. . 
T Consensus         7 ~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~~~~~~~~~~~   86 (482)
T 1ojt_A            7 YDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPELDIDML   86 (482)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCCHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCceeeecccchHHHHHHHHHHHHHHHHHhCCcccCCCccCHHHH
Confidence            47999999999999999999999999999986543100                                   0010 0 


Q ss_pred             ----------HHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCC------------cEEecCEEEEccCCcCC
Q 014997          177 ----------LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG------------STIDADTIVIGIGAKPT  234 (414)
Q Consensus       177 ----------~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g------------~~i~~D~vi~a~G~~p~  234 (414)
                                +...+.+.+++.||+++.++.+. +.   .+. ..+.+.+|            .++.+|.+|+|+|.+|.
T Consensus        87 ~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~~---~~~-v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtGs~p~  161 (482)
T 1ojt_A           87 RAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQF-LD---PHH-LEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVT  161 (482)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEE-EE---TTE-EEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEE-cc---CCE-EEEEecCCcccccccccCcceEEEcCEEEECCCCCCC
Confidence                      11123455677899999887543 22   222 24444455            57999999999999886


Q ss_pred             C
Q 014997          235 V  235 (414)
Q Consensus       235 ~  235 (414)
                      .
T Consensus       162 ~  162 (482)
T 1ojt_A          162 K  162 (482)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=97.89  E-value=5.9e-05  Score=75.64  Aligned_cols=101  Identities=21%  Similarity=0.303  Sum_probs=70.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhC---CCcEEEEeeCCccccc----------------------------c---------c
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPENHLLQR----------------------------L---------F  173 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~---g~~Vtlv~~~~~~l~~----------------------------~---------~  173 (414)
                      .+|+|||||+.|+.+|..|+++   |.+|+++++.+ +-..                            .         .
T Consensus         3 ~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~   81 (499)
T 1xdi_A            3 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAKI   81 (499)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------CB
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCcccCcCccchHHHHHHHHHHHHHHHHHhCCCccccCCCcc
Confidence            4699999999999999999999   99999999875 2000                            0         0


Q ss_pred             CH-H-----------HHHHHHHHHHhCCcEEEcCceEEEEEecC--CCcEEEEEeCCCc--EEecCEEEEccCCcCCCh
Q 014997          174 TP-S-----------LAQRYEQLYQQNGVKFVKGASIKNLEAGS--DGRVAAVKLEDGS--TIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       174 ~~-~-----------~~~~~~~~l~~~gv~i~~~~~v~~i~~~~--~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~~~  236 (414)
                      +. .           +...+.+.+++.||+++.++ +..+....  ++....+.+.+|+  .+.+|.+|+|+|.+|...
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviATGs~p~~p  159 (499)
T 1xdi_A           82 SLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGR-GELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRIL  159 (499)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESE-EEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCCC
Confidence            10 1           12224566788899999986 55553210  0123356667776  799999999999988643

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=97.88  E-value=8e-05  Score=75.23  Aligned_cols=55  Identities=16%  Similarity=0.266  Sum_probs=43.9

Q ss_pred             HHHHHHHHh-CCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997          179 QRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       179 ~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (414)
                      +.+.+.+++ .|++++.+ +|+++..++++.+..|.+.+|.++.+|.||.|.|....
T Consensus       179 ~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~  234 (526)
T 2pyx_A          179 QLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSL  234 (526)
T ss_dssp             HHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCC
T ss_pred             HHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchH
Confidence            334455566 89999999 59999876566666788888878999999999999764

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.88  E-value=3.4e-06  Score=83.71  Aligned_cols=89  Identities=15%  Similarity=0.203  Sum_probs=67.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHh-C------CCcEEEEeeCCccccc---------ccCHHHHHHHHHHHHhCCcEEEcCc
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVG-W------KLDTTIIFPENHLLQR---------LFTPSLAQRYEQLYQQNGVKFVKGA  196 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~-~------g~~Vtlv~~~~~~l~~---------~~~~~~~~~~~~~l~~~gv~i~~~~  196 (414)
                      .++|+|||+|+.|+.+|..|++ .      |.+|+++++.+.+...         ....++...+.+.+++.||+++.+.
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~~gv~p~~~~~~~~~~~~~~~~~~~~v~~~~~v   82 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV   82 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccccccCCCCCCHHHHHHHHHHHHhcCCCEEEeeE
Confidence            4689999999999999999999 7      8999999998765321         1223566677778888999999885


Q ss_pred             eEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCc
Q 014997          197 SIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  232 (414)
Q Consensus       197 ~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~  232 (414)
                      .+     +  .   .|.++++ .+.+|.||+|+|..
T Consensus        83 ~v-----~--~---~v~~~~~-~~~~d~lViAtG~~  107 (456)
T 1lqt_A           83 VV-----G--E---HVQPGEL-SERYDAVIYAVGAQ  107 (456)
T ss_dssp             CB-----T--T---TBCHHHH-HHHSSEEEECCCCC
T ss_pred             EE-----C--C---EEEECCC-eEeCCEEEEeeCCC
Confidence            43     1  1   2344444 47899999999997

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=97.87  E-value=6.1e-06  Score=86.30  Aligned_cols=88  Identities=19%  Similarity=0.185  Sum_probs=67.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc----------ccCHHHHHHHHHHHHhC-CcEEEcCceEEEE
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------LFTPSLAQRYEQLYQQN-GVKFVKGASIKNL  201 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~----------~~~~~~~~~~~~~l~~~-gv~i~~~~~v~~i  201 (414)
                      .++|+|||||+.|+.+|..|+++|.+|+++++.+.+...          .....+..++.+.+++. ||+++.++.++  
T Consensus       391 ~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~--  468 (690)
T 3k30_A          391 DARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQESALPGLSAWGRVKEYREAVLAELPNVEIYRESPMT--  468 (690)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHHHHTSTTCGGGGHHHHHHHHHHHTCTTEEEESSCCCC--
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeeeccCCCchhHHHHHHHHHHHHHHHcCCCEEEECCeec--
Confidence            468999999999999999999999999999997644211          01134566777778887 99999886432  


Q ss_pred             EecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997          202 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       202 ~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (414)
                                  ..++.++.+|.+|+|+|..|.
T Consensus       469 ------------~~~~~~~~~d~lvlAtG~~~~  489 (690)
T 3k30_A          469 ------------GDDIVEFGFEHVITATGATWR  489 (690)
T ss_dssp             ------------HHHHHHTTCCEEEECCCEEEC
T ss_pred             ------------HHHHhhcCCCEEEEcCCCccc
Confidence                        123345789999999999854

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.87  E-value=3.3e-05  Score=77.38  Aligned_cols=98  Identities=21%  Similarity=0.294  Sum_probs=65.9

Q ss_pred             CeEEEECCChHHHHHHHHHHh-CCCcEEEEee--------CCccccc---------------------------------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVG-WKLDTTIIFP--------ENHLLQR---------------------------------  171 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~-~g~~Vtlv~~--------~~~~l~~---------------------------------  171 (414)
                      .+|+|||||+.|+.+|..|++ .|.+|+++++        ...+-..                                 
T Consensus         4 ~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~   83 (490)
T 1fec_A            4 YDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGWELD   83 (490)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEECC
T ss_pred             ccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCCcCccccCCCcchhhHHHHHHHHHHHHHHHHhcCcccC
Confidence            479999999999999999999 9999999992        2222100                                 


Q ss_pred             ----ccC-HH-----------HHHHHHHHHHhC-CcEEEcCceEEEEEecCCCcEEEEEe---CCC---cEEecCEEEEc
Q 014997          172 ----LFT-PS-----------LAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKL---EDG---STIDADTIVIG  228 (414)
Q Consensus       172 ----~~~-~~-----------~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~~~v~~---~~g---~~i~~D~vi~a  228 (414)
                          .++ +.           +...+.+.+++. ||+++.+. +..+..   .. ..+..   .+|   +++.+|.+|+|
T Consensus        84 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~-~~~i~~---~~-v~v~~~~~~~g~~~~~~~~d~lviA  158 (490)
T 1fec_A           84 RESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGF-GALQDN---HT-VLVRESADPNSAVLETLDTEYILLA  158 (490)
T ss_dssp             GGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESE-EEEEET---TE-EEEESSSSTTSCEEEEEEEEEEEEC
T ss_pred             CcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeE-EEEeeC---CE-EEEEeeccCCCCceEEEEcCEEEEe
Confidence                001 01           112234456677 99999886 555542   21 22332   366   68999999999


Q ss_pred             cCCcCCCh
Q 014997          229 IGAKPTVS  236 (414)
Q Consensus       229 ~G~~p~~~  236 (414)
                      +|.+|...
T Consensus       159 tGs~p~~p  166 (490)
T 1fec_A          159 TGSWPQHL  166 (490)
T ss_dssp             CCEEECCC
T ss_pred             CCCCCCCC
Confidence            99988643

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.87  E-value=5.5e-05  Score=81.90  Aligned_cols=101  Identities=16%  Similarity=0.154  Sum_probs=71.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccc-------c----CHHHHHHHHHHHHhC-CcEEEcCceEEE
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-------F----TPSLAQRYEQLYQQN-GVKFVKGASIKN  200 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~-------~----~~~~~~~~~~~l~~~-gv~i~~~~~v~~  200 (414)
                      ..+|+|||+|+.|+.+|..|++.|.+|+|+++.+.+....       +    ..++...+.+.+.+. +|+++.++.|..
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~~~~k~~i~~~~~~~~~~~~~~~l~~~~~v~~~~~~~V~~  207 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLLDTAGEQIDGMDSSAWIEQVTSELAEAEETTHLQRTTVFG  207 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGGGSSCCEETTEEHHHHHHHHHHHHHHSTTEEEESSEEEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceeccCCccccCCCCHHHHHHHHHHHHhhcCCcEEEeCCEEEe
Confidence            3579999999999999999999999999999876542111       1    123334445556664 999999999988


Q ss_pred             EEecCCCcEEEEEe---------------CCCcEEecCEEEEccCCcCCC
Q 014997          201 LEAGSDGRVAAVKL---------------EDGSTIDADTIVIGIGAKPTV  235 (414)
Q Consensus       201 i~~~~~~~~~~v~~---------------~~g~~i~~D~vi~a~G~~p~~  235 (414)
                      +..  ++.+..+..               .++.++.+|.+|+|+|..|..
T Consensus       208 i~~--~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~  255 (965)
T 2gag_A          208 SYD--ANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERP  255 (965)
T ss_dssp             EET--TTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECC
T ss_pred             eec--CCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccCC
Confidence            863  222222211               112368999999999998753

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.85  E-value=3.1e-05  Score=77.61  Aligned_cols=96  Identities=22%  Similarity=0.318  Sum_probs=65.2

Q ss_pred             CeEEEECCChHHHHHHHHHHh-CCCcEEEEee--------CCccccc---------------------------------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVG-WKLDTTIIFP--------ENHLLQR---------------------------------  171 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~-~g~~Vtlv~~--------~~~~l~~---------------------------------  171 (414)
                      .+|+|||||+.|+.+|..|++ .|.+|+++++        ...+-..                                 
T Consensus         8 ~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~   87 (495)
T 2wpf_A            8 FDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDHLRESAGFGWEFD   87 (495)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCBTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTTEECC
T ss_pred             cCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCeeecCCcchHHHHHHHHHHHHHHhHHHhcCcccC
Confidence            579999999999999999999 9999999992        2222100                                 


Q ss_pred             ----ccC-HHH-----------HHHHHHHHHhC-CcEEEcCceEEEEEecCCCcEEEEEeC---C-----CcEEecCEEE
Q 014997          172 ----LFT-PSL-----------AQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLE---D-----GSTIDADTIV  226 (414)
Q Consensus       172 ----~~~-~~~-----------~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~~~v~~~---~-----g~~i~~D~vi  226 (414)
                          .++ ..+           ...+...+++. ||+++.+. +..+..   .   .|.+.   +     ++++.+|.+|
T Consensus        88 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~-~~~i~~---~---~v~v~~~~~~~~~~~~~~~~d~lV  160 (495)
T 2wpf_A           88 GSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLGW-GSLESK---N---VVVVRETADPKSAVKERLQADHIL  160 (495)
T ss_dssp             GGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEEESE-EEEEET---T---EEEEESSSSTTSCEEEEEEEEEEE
T ss_pred             CcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeE-EEEeeC---C---EEEEeecCCccCCCCeEEEcCEEE
Confidence                001 011           11223345677 99999885 445532   2   34443   4     6689999999


Q ss_pred             EccCCcCCCh
Q 014997          227 IGIGAKPTVS  236 (414)
Q Consensus       227 ~a~G~~p~~~  236 (414)
                      +|+|.+|...
T Consensus       161 iATGs~p~~p  170 (495)
T 2wpf_A          161 LATGSWPQMP  170 (495)
T ss_dssp             ECCCEEECCC
T ss_pred             EeCCCCcCCC
Confidence            9999988643

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=97.83  E-value=0.00017  Score=70.53  Aligned_cols=48  Identities=15%  Similarity=0.290  Sum_probs=38.0

Q ss_pred             HHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997          183 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       183 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (414)
                      +.+++.|++|++++.|++|..+ ++.+  | ..+|+++.||.||+++|....
T Consensus       197 ~~~~~~G~~i~~~~~V~~i~~~-~~~v--V-~~~g~~~~ad~Vv~a~~~~~~  244 (421)
T 3nrn_A          197 RIIMENKGKILTRKEVVEINIE-EKKV--Y-TRDNEEYSFDVAISNVGVRET  244 (421)
T ss_dssp             HHHHTTTCEEESSCCEEEEETT-TTEE--E-ETTCCEEECSEEEECSCHHHH
T ss_pred             HHHHHCCCEEEcCCeEEEEEEE-CCEE--E-EeCCcEEEeCEEEECCCHHHH
Confidence            4456789999999999999864 4444  4 567889999999999997643

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.79  E-value=2.6e-05  Score=81.20  Aligned_cols=87  Identities=17%  Similarity=0.288  Sum_probs=65.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc-----ccC-----HHHHHHHHHHHHhCCcEEEcCceEEEEE
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----LFT-----PSLAQRYEQLYQQNGVKFVKGASIKNLE  202 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----~~~-----~~~~~~~~~~l~~~gv~i~~~~~v~~i~  202 (414)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+...     .++     .+....+.+.+++.||+++.++.++.  
T Consensus       373 ~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~--  450 (671)
T 1ps9_A          373 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTA--  450 (671)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCCS--
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeeeccccCCCHHHHHHHHHHHHHHHHHcCCEEEeCcEecH--
Confidence            468999999999999999999999999999987654211     111     13344566777888999998875421  


Q ss_pred             ecCCCcEEEEEeCCCcEE-ecCEEEEccCCcCCCh
Q 014997          203 AGSDGRVAAVKLEDGSTI-DADTIVIGIGAKPTVS  236 (414)
Q Consensus       203 ~~~~~~~~~v~~~~g~~i-~~D~vi~a~G~~p~~~  236 (414)
                                     ..+ .+|.+|+|+|.+|...
T Consensus       451 ---------------~~~~~~d~lviAtG~~p~~~  470 (671)
T 1ps9_A          451 ---------------DQLQAFDETILASGIVPRTP  470 (671)
T ss_dssp             ---------------SSSCCSSEEEECCCEEECCC
T ss_pred             ---------------HHhhcCCEEEEccCCCcCCC
Confidence                           113 8999999999988743

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=97.77  E-value=0.00019  Score=72.02  Aligned_cols=55  Identities=13%  Similarity=0.137  Sum_probs=41.8

Q ss_pred             HHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEe---CCCc--EEecCEEEEccCCcCC
Q 014997          178 AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKPT  234 (414)
Q Consensus       178 ~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~---~~g~--~i~~D~vi~a~G~~p~  234 (414)
                      ...+.+.+++.|++++.+++|+++..++  .+..|.+   .+|+  ++.+|.||.|+|....
T Consensus       152 ~~~l~~~a~~~Gv~i~~~~~V~~l~~~~--~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s~  211 (501)
T 2qcu_A          152 VLANAQMVVRKGGEVLTRTRATSARREN--GLWIVEAEDIDTGKKYSWQARGLVNATGPWVK  211 (501)
T ss_dssp             HHHHHHHHHHTTCEEECSEEEEEEEEET--TEEEEEEEETTTCCEEEEEESCEEECCGGGHH
T ss_pred             HHHHHHHHHHcCCEEEcCcEEEEEEEeC--CEEEEEEEECCCCCEEEEECCEEEECCChhHH
Confidence            3445666778899999999999998643  4445666   3565  7999999999997653

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.76  E-value=4.3e-05  Score=76.23  Aligned_cols=97  Identities=19%  Similarity=0.317  Sum_probs=66.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc-----------------------------------ccC---
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----------------------------------LFT---  174 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----------------------------------~~~---  174 (414)
                      ..+|+|||+|+.|+.+|..|+++|.+|+++++.. +-..                                   .++   
T Consensus        20 ~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~~-~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   98 (478)
T 3dk9_A           20 SYDYLVIGGGSGGLASARRAAELGARAAVVESHK-LGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRV   98 (478)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCCCCCCCCHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-CCCcccccCccchHHHHHHHHHHHHHHHHHhcCccCCCCccCHHH
Confidence            3689999999999999999999999999999763 2000                                   000   


Q ss_pred             ---------HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCCh
Q 014997          175 ---------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       175 ---------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  236 (414)
                               ..+...+...+++.||+++.+. +..+.  ....  .+. .+++++.+|.+|+|+|.+|...
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~~~--~~~~--~v~-~~g~~~~~d~lviAtG~~p~~p  163 (478)
T 3dk9_A           99 IKEKRDAYVSRLNAIYQNNLTKSHIEIIRGH-AAFTS--DPKP--TIE-VSGKKYTAPHILIATGGMPSTP  163 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCEEEESC-EEECS--CSSC--EEE-ETTEEEECSCEEECCCEEECCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEee--CCeE--EEE-ECCEEEEeeEEEEccCCCCCCC
Confidence                     1122334455677899999875 22221  1111  334 4667899999999999988643

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=97.73  E-value=9.1e-05  Score=73.04  Aligned_cols=62  Identities=24%  Similarity=0.410  Sum_probs=45.6

Q ss_pred             HHHHHHHHhCCcEEEcCceEEEEEec--------------CCCcEEEEEeCCCcEE--ecCEEEEccCCcCCChhhhhcC
Q 014997          179 QRYEQLYQQNGVKFVKGASIKNLEAG--------------SDGRVAAVKLEDGSTI--DADTIVIGIGAKPTVSPFERVG  242 (414)
Q Consensus       179 ~~~~~~l~~~gv~i~~~~~v~~i~~~--------------~~~~~~~v~~~~g~~i--~~D~vi~a~G~~p~~~~l~~~g  242 (414)
                      ..+.+.+++.|++++.+++|+++..+              +++.+..|.+.+| ++  .||.||+|+|.... .++...+
T Consensus       185 ~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~~s~-~l~~~~g  262 (448)
T 3axb_A          185 DYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGVWSN-RLLNPLG  262 (448)
T ss_dssp             HHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGGGHH-HHHGGGT
T ss_pred             HHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCcCHH-HHHHHcC
Confidence            34556667889999999999999851              2445556788888 58  99999999997643 3444443

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=97.70  E-value=0.00039  Score=71.07  Aligned_cols=52  Identities=21%  Similarity=0.222  Sum_probs=39.4

Q ss_pred             HHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEe---CCCc--EEecCEEEEccCCc
Q 014997          181 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK  232 (414)
Q Consensus       181 ~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~---~~g~--~i~~D~vi~a~G~~  232 (414)
                      +.+.+++.||+++.++.++++..++++++..|..   .+|+  .+.++.||+|+|..
T Consensus       149 L~~~~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~  205 (588)
T 2wdq_A          149 LYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGA  205 (588)
T ss_dssp             HHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCC
T ss_pred             HHHHHHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCC
Confidence            4445567799999999999998644566666654   4665  68999999999974

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=97.70  E-value=0.00011  Score=73.30  Aligned_cols=96  Identities=25%  Similarity=0.379  Sum_probs=66.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc------cc----------------------------cc--------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH------LL----------------------------QR--------  171 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~------~l----------------------------~~--------  171 (414)
                      -+|+|||+|+.|+.+|..|++.|.+|+++++.+.      +-                            ..        
T Consensus         4 ~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~   83 (476)
T 3lad_A            4 FDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTGEV   83 (476)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECSCC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC
Confidence            4799999999999999999999999999998751      00                            00        


Q ss_pred             ccC------------HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCC--cEEecCEEEEccCCcCC
Q 014997          172 LFT------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPT  234 (414)
Q Consensus       172 ~~~------------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~  234 (414)
                      .++            ..+...+...+++.||+++.+.... +  + ... ..+...+|  .++.+|.+|+|+|.+|.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~-~--~-~~~-~~v~~~~g~~~~~~~d~lvlAtG~~p~  155 (476)
T 3lad_A           84 AIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKL-L--A-GKK-VEVTAADGSSQVLDTENVILASGSKPV  155 (476)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEE-C--S-TTC-EEEECTTSCEEEECCSCEEECCCEEEC
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE-e--c-CCE-EEEEcCCCceEEEEcCEEEEcCCCCCC
Confidence            000            0111223345667799999876332 2  2 222 35666777  57999999999999886

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.67  E-value=1.5e-05  Score=83.83  Aligned_cols=88  Identities=17%  Similarity=0.181  Sum_probs=59.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccc-----cC-----HHHHHHHHHHHHh------CCcEEEcCc
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-----FT-----PSLAQRYEQLYQQ------NGVKFVKGA  196 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~-----~~-----~~~~~~~~~~l~~------~gv~i~~~~  196 (414)
                      .++|+|||||+.|+.+|..|+++|.+|+|+++.+.+....     ++     ....+++.+.++.      .++++..+.
T Consensus       389 ~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~~~~~pg~~~~~~~~~~~~~~i~~~~~~~~~~v~i~~~~  468 (729)
T 1o94_A          389 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQLALGQK  468 (729)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTTCGGGHHHHHHHHHHHHHHHHHSTTCEEECSCC
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeeecccCCChHHHHHHHHHHHHHHHHhhcccCCceEEEeCe
Confidence            4689999999999999999999999999999987542110     00     1223333333332      255554432


Q ss_pred             eEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997          197 SIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       197 ~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (414)
                      .              +.++++..+.+|.||+|+|..|.
T Consensus       469 ~--------------v~~~~~~~~~~d~vviAtG~~~~  492 (729)
T 1o94_A          469 P--------------MTADDVLQYGADKVIIATGARWN  492 (729)
T ss_dssp             C--------------CCHHHHHTSCCSEEEECCCEEEC
T ss_pred             E--------------EehhhccccCCCEEEEcCCCCcc
Confidence            1              22334446889999999999854

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=97.66  E-value=0.00022  Score=71.03  Aligned_cols=98  Identities=18%  Similarity=0.293  Sum_probs=69.6

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc-------------cccc-----------------------------
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL-------------LQRL-----------------------------  172 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~-------------l~~~-----------------------------  172 (414)
                      .|+|||+|..|+-+|..|++.|.+|+++++...-             +...                             
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~d~l~~g~~~~d~~~v~~~~~~   80 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKRIDGGSTPIAKGGVAASVGSDDSPELHAQDTIRVGDGLCDVKTVNYVTSE   80 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSTTCSSGGGCCSCEECCCSTTCCHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCchHHHHhCCeEEeCCCCCCHHHHHHHHHHhcCCcCCHHHHHHHHHH
Confidence            4899999999999999999999999999986100             0000                             


Q ss_pred             --------------c----------------------CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeC-
Q 014997          173 --------------F----------------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-  215 (414)
Q Consensus       173 --------------~----------------------~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~-  215 (414)
                                    +                      +..+...+.+.+++.||+++.++.+ ++..+ ++.+..+... 
T Consensus        81 ~~~~i~~l~~~Gv~~~~~~~~~~g~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~i~~~~~v-~l~~~-~~~v~Gv~v~~  158 (472)
T 2e5v_A           81 AKNVIETFESWGFEFEEDLRLEGGHTKRRVLHRTDETGREIFNFLLKLAREEGIPIIEDRLV-EIRVK-DGKVTGFVTEK  158 (472)
T ss_dssp             HHHHHHHHHHTTCCCCSSCBCCTTCSSCCEECSSSCHHHHHHHHHHHHHHHTTCCEECCCEE-EEEEE-TTEEEEEEETT
T ss_pred             HHHHHHHHHHcCCCCCcccccccCcCcCcEEEeCCCCHHHHHHHHHHHHHhCCCEEEECcEE-EEEEe-CCEEEEEEEEe
Confidence                          0                      0123344555567789999999999 98654 4555555543 


Q ss_pred             CCcEEecCEEEEccCCcCC
Q 014997          216 DGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       216 ~g~~i~~D~vi~a~G~~p~  234 (414)
                      ++.++.+|.||+|+|..+.
T Consensus       159 ~~g~~~a~~VVlAtGg~~~  177 (472)
T 2e5v_A          159 RGLVEDVDKLVLATGGYSY  177 (472)
T ss_dssp             TEEECCCSEEEECCCCCGG
T ss_pred             CCCeEEeeeEEECCCCCcc
Confidence            2235789999999998763

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=97.66  E-value=0.0002  Score=72.15  Aligned_cols=98  Identities=16%  Similarity=0.209  Sum_probs=66.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC--------cccc-----------------------------------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN--------HLLQ-----------------------------------  170 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~--------~~l~-----------------------------------  170 (414)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++.+        .+-.                                   
T Consensus        33 ~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~g~~~~~  112 (519)
T 3qfa_A           33 YDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEE  112 (519)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTBCCCS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhcCcccCC
Confidence            479999999999999999999999999999743        1100                                   


Q ss_pred             -cccC-H-----------HHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCc--EEecCEEEEccCCcCCC
Q 014997          171 -RLFT-P-----------SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTV  235 (414)
Q Consensus       171 -~~~~-~-----------~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~~  235 (414)
                       ..++ +           .+...+...+++.||+++.+. ...+..   . ...+...+|+  ++.+|.+|+|||.+|..
T Consensus       113 ~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g~-a~~~d~---~-~v~v~~~~g~~~~i~~d~lViATGs~p~~  187 (519)
T 3qfa_A          113 TVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAY-GQFIGP---H-RIKATNNKGKEKIYSAERFLIATGERPRY  187 (519)
T ss_dssp             SCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSE-EEEEET---T-EEEEECTTCCCCEEEEEEEEECCCEEECC
T ss_pred             cCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEeeC---C-EEEEEcCCCCEEEEECCEEEEECCCCcCC
Confidence             0001 0           011122345677899998765 333331   2 2345566664  79999999999998864


Q ss_pred             h
Q 014997          236 S  236 (414)
Q Consensus       236 ~  236 (414)
                      .
T Consensus       188 p  188 (519)
T 3qfa_A          188 L  188 (519)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=97.62  E-value=0.00025  Score=72.21  Aligned_cols=61  Identities=18%  Similarity=0.147  Sum_probs=43.4

Q ss_pred             HHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCC---C--cEEecCEEEEccCCcCCChhhhhcC
Q 014997          180 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---G--STIDADTIVIGIGAKPTVSPFERVG  242 (414)
Q Consensus       180 ~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~---g--~~i~~D~vi~a~G~~p~~~~l~~~g  242 (414)
                      .+.+.+++.|++++.+++|+++..+ ++.+..|.+.+   |  .++.||.||.|+|.... .+++..|
T Consensus       175 ~L~~~a~~~G~~i~~~~~V~~l~~~-~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s~-~l~~~~g  240 (561)
T 3da1_A          175 EIMKEAVARGAVALNYMKVESFIYD-QGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWVD-TLREKDR  240 (561)
T ss_dssp             HHHHHHHHTTCEEEESEEEEEEEEE-TTEEEEEEEEETTTCCEEEEEEEEEEECCGGGHH-HHHHTTT
T ss_pred             HHHHHHHHcCCEEEcCCEEEEEEEc-CCeEEEEEEEEcCCCceEEEECCEEEECCCcchH-HHHHhcC
Confidence            3445567889999999999999864 55555666643   3  47999999999997542 3344344

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=97.59  E-value=4.2e-05  Score=73.86  Aligned_cols=88  Identities=15%  Similarity=0.185  Sum_probs=67.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhC--CCcEEEEeeCCcc----------------------c-cc-----------------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHL----------------------L-QR-----------------  171 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~----------------------l-~~-----------------  171 (414)
                      .+|+|||||+.|+.+|..|++.  |.+|+|+++.+.+                      . ..                 
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERLNPQFLEDFKLVHH   80 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSCGGGGCCEEECCEEEEES
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhhhHHHhhccccceEEEeC
Confidence            3699999999999999999998  9999999987543                      0 00                 


Q ss_pred             --------------ccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997          172 --------------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       172 --------------~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (414)
                                    ....++.+.+.+.+++.|++++++++|++++..             +.+.+|.||.|.|....
T Consensus        81 g~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~-------------~~~~ad~vV~AdG~~S~  144 (381)
T 3c4a_A           81 NEPSLMSTGVLLCGVERRGLVHALRDKCRSQGIAIRFESPLLEHGEL-------------PLADYDLVVLANGVNHK  144 (381)
T ss_dssp             SSEEECCCCSCEEEEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGGC-------------CGGGCSEEEECCGGGGG
T ss_pred             CeeEEecCCCceeeecHHHHHHHHHHHHHHCCCEEEeCCEeccchhc-------------ccccCCEEEECCCCCch
Confidence                          001345666777778889999999988777421             12579999999997653

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=97.54  E-value=0.00033  Score=72.43  Aligned_cols=100  Identities=19%  Similarity=0.266  Sum_probs=73.4

Q ss_pred             CeEEEECCChHHHHHHHHHHh-CCCcEEEEeeCCccc--------------------------------------c----
Q 014997          134 KKVVVVGGGYIGMEVAAAAVG-WKLDTTIIFPENHLL--------------------------------------Q----  170 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~-~g~~Vtlv~~~~~~l--------------------------------------~----  170 (414)
                      .+|+|||+|++|+-+|..|++ .|.+|+|+++.+.+.                                      .    
T Consensus        33 ~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~lGl~~~~~~~~~~~~~~~~~~~~~~  112 (639)
T 2dkh_A           33 VDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADSILKEACWINDVTFWKPDPG  112 (639)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSCSCCEECHHHHHHHHHTTCHHHHHHHSEEECEEEEEEECTT
T ss_pred             CcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCcHHHHHHhcccccceEEECCCCC
Confidence            479999999999999999999 999999999763210                                      0    


Q ss_pred             --c---------------------ccC-HHHHHHHHHHHHhCCc--EEEcCceEEEEEecCC--CcEEEEEeC------C
Q 014997          171 --R---------------------LFT-PSLAQRYEQLYQQNGV--KFVKGASIKNLEAGSD--GRVAAVKLE------D  216 (414)
Q Consensus       171 --~---------------------~~~-~~~~~~~~~~l~~~gv--~i~~~~~v~~i~~~~~--~~~~~v~~~------~  216 (414)
                        .                     .++ ..+.+.+.+.+++.|+  +++.++++++++.+++  +....+.+.      +
T Consensus       113 ~~g~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~~  192 (639)
T 2dkh_A          113 QPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHA  192 (639)
T ss_dssp             STTCEEEEEEEESSCTTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGGT
T ss_pred             CCcceEeecccCcccCCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccCC
Confidence              0                     000 1345567777788876  9999999999986543  212244443      4


Q ss_pred             C--cEEecCEEEEccCCcC
Q 014997          217 G--STIDADTIVIGIGAKP  233 (414)
Q Consensus       217 g--~~i~~D~vi~a~G~~p  233 (414)
                      |  +++.+|.||.|.|...
T Consensus       193 G~~~~i~a~~vVgADG~~S  211 (639)
T 2dkh_A          193 GQIETVQARYVVGCDGARS  211 (639)
T ss_dssp             TCEEEEEEEEEEECCCTTC
T ss_pred             CCeEEEEeCEEEECCCcch
Confidence            5  4799999999999864

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=97.52  E-value=0.00037  Score=69.60  Aligned_cols=98  Identities=20%  Similarity=0.215  Sum_probs=65.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC--------ccc------------------------------------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN--------HLL------------------------------------  169 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~--------~~l------------------------------------  169 (414)
                      -.|+|||+|+.|+.+|..|++.|.+|+++++.+        .+-                                    
T Consensus         7 ~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~g~~~~~   86 (488)
T 3dgz_A            7 FDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYGWEVAQ   86 (488)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCCCCS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhcCcccCC
Confidence            479999999999999999999999999998621        110                                    


Q ss_pred             ccccC-HH-----------HHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCC--cEEecCEEEEccCCcCCC
Q 014997          170 QRLFT-PS-----------LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTV  235 (414)
Q Consensus       170 ~~~~~-~~-----------~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~  235 (414)
                      +..++ +.           +...+...+++.||+++.+. +..+    +.....+...+|  .++.+|.+|+|+|.+|..
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g~-~~~~----~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~  161 (488)
T 3dgz_A           87 PVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIK-ASFV----DEHTVRGVDKGGKATLLSAEHIVIATGGRPRY  161 (488)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCE-EEES----SSSEEEEECTTSCEEEEEEEEEEECCCEEECC
T ss_pred             cCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEc----cCCeEEEEeCCCceEEEECCEEEEcCCCCCCC
Confidence            00011 00           11123345677899998764 2222    122235666676  479999999999998864


Q ss_pred             h
Q 014997          236 S  236 (414)
Q Consensus       236 ~  236 (414)
                      .
T Consensus       162 p  162 (488)
T 3dgz_A          162 P  162 (488)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=97.47  E-value=0.00063  Score=69.77  Aligned_cols=98  Identities=18%  Similarity=0.255  Sum_probs=70.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhCC--CcEEEEeeCCccccc------------------------------c---------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQR------------------------------L---------  172 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l~~------------------------------~---------  172 (414)
                      -.|+|||+|..|+-+|..|++.|  .+|+|+++.+.....                              .         
T Consensus         6 ~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~~s~~a~GGi~~~~~~~ds~~~~~~d~~~~g~~~~d~~~v~~   85 (602)
T 1kf6_A            6 ADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVDY   85 (602)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCEECCCSTTCCHHHHHHHHHHHTTTCSCHHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCChHHHhcCccEEeCCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence            36999999999999999999999  999999986321000                              0         


Q ss_pred             ------------------c----------------------------CHHHHHHHHHHHHhCC-cEEEcCceEEEEEecC
Q 014997          173 ------------------F----------------------------TPSLAQRYEQLYQQNG-VKFVKGASIKNLEAGS  205 (414)
Q Consensus       173 ------------------~----------------------------~~~~~~~~~~~l~~~g-v~i~~~~~v~~i~~~~  205 (414)
                                        +                            +..+...+.+.+++.| |+++.++.+.++..+ 
T Consensus        86 ~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~d~tg~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~~-  164 (602)
T 1kf6_A           86 FVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVD-  164 (602)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCBCTTSSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTCTTEEEEETEEEEEEEEE-
T ss_pred             HHHHHHHHHHHHHHcCCCcccCCCCcccccccCCccCCeEEEcCCCCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEe-
Confidence                              0                            0122233444556677 999999999999754 


Q ss_pred             CCcEEEEE---eCCCc--EEecCEEEEccCCc
Q 014997          206 DGRVAAVK---LEDGS--TIDADTIVIGIGAK  232 (414)
Q Consensus       206 ~~~~~~v~---~~~g~--~i~~D~vi~a~G~~  232 (414)
                      ++.+..+.   +.+|+  .+.++.||+|+|..
T Consensus       165 ~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~  196 (602)
T 1kf6_A          165 DGHVRGLVAMNMMEGTLVQIRANAVVMATGGA  196 (602)
T ss_dssp             TTEEEEEEEEETTTTEEEEEECSCEEECCCCC
T ss_pred             CCEEEEEEEEEcCCCcEEEEEcCeEEECCCCC
Confidence            45555543   25776  69999999999963

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=97.45  E-value=0.00082  Score=68.14  Aligned_cols=96  Identities=18%  Similarity=0.282  Sum_probs=68.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc-------------------------------------------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------------------------------------------  170 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------------------  170 (414)
                      .+|+|||+|++|+-+|..|++.|.+|+|+++.+.+..                                           
T Consensus        27 ~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~  106 (549)
T 2r0c_A           27 TDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAKQIRTAGWPGDHPLDAAWVTRV  106 (549)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCCCCEECHHHHHHHHHTTCHHHHHTSSCCTTSBCCEEEESSB
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCChHHHHhhcCCcccccceEEeccC
Confidence            4799999999999999999999999999998632200                                           


Q ss_pred             -c-c---c---------------------C-HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCC---C--c
Q 014997          171 -R-L---F---------------------T-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---G--S  218 (414)
Q Consensus       171 -~-~---~---------------------~-~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~---g--~  218 (414)
                       . .   +                     + ..+.+.+.+.+++.   +++++++++++.++++.  .+++.+   |  +
T Consensus       107 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~---v~~~~~v~~~~~~~~~v--~v~~~~~~~G~~~  181 (549)
T 2r0c_A          107 GGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGER---LRTRSRLDSFEQRDDHV--RATITDLRTGATR  181 (549)
T ss_dssp             TSCEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGGG---EECSEEEEEEEECSSCE--EEEEEETTTCCEE
T ss_pred             CCceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHHh---cccCcEEEEEEEeCCEE--EEEEEECCCCCEE
Confidence             0 0   0                     0 02334444555544   88999999998765543  344443   6  4


Q ss_pred             EEecCEEEEccCCcCC
Q 014997          219 TIDADTIVIGIGAKPT  234 (414)
Q Consensus       219 ~i~~D~vi~a~G~~p~  234 (414)
                      ++.||.||.|.|....
T Consensus       182 ~i~a~~vVgADG~~S~  197 (549)
T 2r0c_A          182 AVHARYLVACDGASSP  197 (549)
T ss_dssp             EEEEEEEEECCCTTCH
T ss_pred             EEEeCEEEECCCCCcH
Confidence            7999999999998653

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=97.40  E-value=0.00067  Score=67.61  Aligned_cols=99  Identities=22%  Similarity=0.277  Sum_probs=65.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC---C----c--c--------------------------------cc-
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE---N----H--L--------------------------------LQ-  170 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~---~----~--~--------------------------------l~-  170 (414)
                      ..+|+|||+|+.|+.+|..|++.|.+|+++++.   +    .  +                                +. 
T Consensus         9 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~g~~~   88 (483)
T 3dgh_A            9 DYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAYGWNV   88 (483)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTBCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCEEEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHHHHHhcCccc
Confidence            357999999999999999999999999999831   1    0  0                                00 


Q ss_pred             ---cccCH-HH-----------HHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCc-EEecCEEEEccCCcCC
Q 014997          171 ---RLFTP-SL-----------AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIGAKPT  234 (414)
Q Consensus       171 ---~~~~~-~~-----------~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~-~i~~D~vi~a~G~~p~  234 (414)
                         ..++. .+           ...+...+++.+|+++.+.. .-+.   .. ...+.+.+|+ ++.+|.+|+|+|.+|.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a-~~~~---~~-~v~v~~~~g~~~~~~d~lviATGs~p~  163 (483)
T 3dgh_A           89 DDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGLG-SFVD---SH-TLLAKLKSGERTITAQTFVIAVGGRPR  163 (483)
T ss_dssp             CCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEE-EEEE---TT-EEEEECTTCCEEEEEEEEEECCCEEEC
T ss_pred             CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEE-EEcc---CC-EEEEEeCCCeEEEEcCEEEEeCCCCcC
Confidence               00110 11           11122346778999987643 2222   12 2356666774 7999999999999886


Q ss_pred             Ch
Q 014997          235 VS  236 (414)
Q Consensus       235 ~~  236 (414)
                      ..
T Consensus       164 ~p  165 (483)
T 3dgh_A          164 YP  165 (483)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=97.36  E-value=0.00046  Score=69.01  Aligned_cols=33  Identities=24%  Similarity=0.237  Sum_probs=30.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++.+
T Consensus         9 ~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~   41 (492)
T 3ic9_A            9 VDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA   41 (492)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            479999999999999999999999999999864

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.34  E-value=0.0011  Score=67.83  Aligned_cols=32  Identities=22%  Similarity=0.393  Sum_probs=30.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEee
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP  164 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~  164 (414)
                      ..+|+|||+|+.|+.+|..|+++|.+|+++++
T Consensus       107 ~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~  138 (598)
T 2x8g_A          107 DYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDY  138 (598)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEECC
T ss_pred             cccEEEECCCccHHHHHHHHHhCCCeEEEEec
Confidence            45899999999999999999999999999996

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=97.33  E-value=0.0021  Score=65.43  Aligned_cols=34  Identities=26%  Similarity=0.434  Sum_probs=31.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      ....|+|||||.+|+-+|..|+++|.+|+|+++.
T Consensus        31 ~~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~   64 (571)
T 2rgh_A           31 EELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQ   64 (571)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            4468999999999999999999999999999875

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=97.31  E-value=0.00059  Score=69.05  Aligned_cols=33  Identities=15%  Similarity=0.299  Sum_probs=30.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  167 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  167 (414)
                      -.|+|||+|..|+-+|..|++ |.+|+|+++.+.
T Consensus         9 ~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~   41 (540)
T 1chu_A            9 CDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPV   41 (540)
T ss_dssp             CSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCT
T ss_pred             CCEEEECccHHHHHHHHHHhc-CCcEEEEECCCC
Confidence            479999999999999999999 999999998753

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=97.29  E-value=0.00061  Score=70.12  Aligned_cols=56  Identities=14%  Similarity=0.279  Sum_probs=44.4

Q ss_pred             CcEEEcCceEEEEEecCC-CcEEEEEeC---CCc--EEecCEEEEccCCcCCChhhhhcCCc
Q 014997          189 GVKFVKGASIKNLEAGSD-GRVAAVKLE---DGS--TIDADTIVIGIGAKPTVSPFERVGLN  244 (414)
Q Consensus       189 gv~i~~~~~v~~i~~~~~-~~~~~v~~~---~g~--~i~~D~vi~a~G~~p~~~~l~~~gl~  244 (414)
                      ||++++++.|+++..+++ +++..|++.   +|+  ++.+|.||+|+|..|+..+|..+|+.
T Consensus       274 nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~~~g~~~~i~A~~VIlaaG~~~s~~lL~~sgiG  335 (623)
T 3pl8_A          274 RFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFG  335 (623)
T ss_dssp             EEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEECEEEEEECSCTTHHHHHHHTTTSS
T ss_pred             CEEEEeCCEEEEEEEECCCCEEEEEEEEEcCCCcEEEEECCEEEEcCCCcCCHHHHHhcCCC
Confidence            789999999999986533 366677664   354  68999999999999998888777663

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=97.28  E-value=0.0017  Score=66.75  Aligned_cols=32  Identities=25%  Similarity=0.240  Sum_probs=29.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      -.|+|||+|..|+-+|..|++.|.+|+++++.
T Consensus        19 ~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~   50 (621)
T 2h88_A           19 FDAVVVGAGGAGLRAAFGLSEAGFNTACVTKL   50 (621)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCcEEEEecc
Confidence            37999999999999999999999999999976

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=97.26  E-value=0.00036  Score=69.82  Aligned_cols=47  Identities=19%  Similarity=0.364  Sum_probs=37.0

Q ss_pred             HHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCC
Q 014997          181 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  231 (414)
Q Consensus       181 ~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~  231 (414)
                      +.+.+++.|+++++++.|++|..+ ++   .+++.+|+++.||.||+++..
T Consensus       228 l~~~l~~~g~~i~~~~~V~~I~~~-~~---~v~~~~G~~~~ad~vI~t~P~  274 (513)
T 4gde_A          228 VANTLPKEKTRFGEKGKVTKVNAN-NK---TVTLQDGTTIGYKKLVSTMAV  274 (513)
T ss_dssp             HHHTSCGGGEEESGGGCEEEEETT-TT---EEEETTSCEEEEEEEEECSCH
T ss_pred             HHHHHHhcCeeeecceEEEEEEcc-CC---EEEEcCCCEEECCEEEECCCH
Confidence            333445678999999999999854 33   467899999999999998764

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=97.21  E-value=0.0018  Score=63.70  Aligned_cols=41  Identities=27%  Similarity=0.510  Sum_probs=34.2

Q ss_pred             cEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCc
Q 014997          190 VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  232 (414)
Q Consensus       190 v~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~  232 (414)
                      +++++++.|++|+.++++  ..|.+.+|+++.||.||+|++..
T Consensus       248 ~~i~~~~~V~~i~~~~~~--~~v~~~~g~~~~ad~vi~a~p~~  288 (470)
T 3i6d_A          248 TKVYKGTKVTKLSHSGSC--YSLELDNGVTLDADSVIVTAPHK  288 (470)
T ss_dssp             EEEECSCCEEEEEECSSS--EEEEESSSCEEEESEEEECSCHH
T ss_pred             CEEEeCCceEEEEEcCCe--EEEEECCCCEEECCEEEECCCHH
Confidence            589999999999876544  36888999889999999998753

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=97.18  E-value=0.0051  Score=62.77  Aligned_cols=85  Identities=16%  Similarity=0.144  Sum_probs=58.7

Q ss_pred             HHHH-cCCeEEcCCcEEEEeCCCC---EEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhh
Q 014997           55 WYKE-KGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL  130 (414)
Q Consensus        55 ~~~~-~~i~~~~~~~V~~id~~~~---~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~  130 (414)
                      .+++ .|++++ +++|+.+..++.   .|.+.+|..+.+|.||+|||+.+.. +..+     |.....            
T Consensus       132 ~Le~~~GVeI~-~~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVLATG~~s~~-~~~~-----G~~~~~------------  192 (637)
T 2zxi_A          132 VCENQENLYIK-QEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFLNG-VIYI-----GDKMIP------------  192 (637)
T ss_dssp             HHHTCTTEEEE-ESCEEEEEESSSBEEEEEETTSCEEECSEEEECCTTCBTC-EEEE-----TTEEEE------------
T ss_pred             HHHhCCCCEEE-EeEEEEEEecCCEEEEEEECCCcEEEeCEEEEccCCCccC-ceec-----cceecC------------
Confidence            4455 499996 579999876544   3778889899999999999997653 2222     222211            


Q ss_pred             cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEee
Q 014997          131 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP  164 (414)
Q Consensus       131 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~  164 (414)
                        +.+   + |+.+++++|..|.+.|.+++.+..
T Consensus       193 --~Gr---~-G~~~A~~la~~L~~lG~~v~~l~t  220 (637)
T 2zxi_A          193 --GGR---L-GEPRSEGLSDFYRRFDFPLIRFKT  220 (637)
T ss_dssp             --CSB---T-TBCCBCTHHHHHHHTTCCCEEEEE
T ss_pred             --CCC---C-CchhHHHHHHHHHhcCCceEEecC
Confidence              122   2 356789999999999988776543

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=97.11  E-value=0.0022  Score=66.52  Aligned_cols=32  Identities=28%  Similarity=0.300  Sum_probs=29.9

Q ss_pred             CeEEEECCChHHHHHHHHHHh-----CCCcEEEEeeC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVG-----WKLDTTIIFPE  165 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~-----~g~~Vtlv~~~  165 (414)
                      ..|+|||+|+.|+-+|..|++     .|.+|+|+++.
T Consensus         9 ~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~   45 (665)
T 1pn0_A            9 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKR   45 (665)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSS
T ss_pred             CcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCC
Confidence            369999999999999999999     99999999976

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=97.09  E-value=0.0039  Score=64.49  Aligned_cols=33  Identities=27%  Similarity=0.364  Sum_probs=30.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      -.|+|||+|..|+-+|..|++.|.+|+|+++.+
T Consensus         6 ~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~   38 (660)
T 2bs2_A            6 CDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIP   38 (660)
T ss_dssp             CSEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             ccEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence            369999999999999999999999999998753

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=97.08  E-value=0.0021  Score=67.65  Aligned_cols=42  Identities=17%  Similarity=0.365  Sum_probs=35.0

Q ss_pred             CCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCC
Q 014997          188 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  231 (414)
Q Consensus       188 ~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~  231 (414)
                      .|++|++++.|++|+.++++ + .|.+.+|+++.+|.||+|++.
T Consensus       542 ~gl~I~l~t~V~~I~~~~~~-v-~V~~~~G~~i~Ad~VIvA~P~  583 (776)
T 4gut_A          542 EGLDIQLKSPVQCIDYSGDE-V-QVTTTDGTGYSAQKVLVTVPL  583 (776)
T ss_dssp             TTSCEESSCCEEEEECSSSS-E-EEEETTCCEEEESEEEECCCH
T ss_pred             hCCcEEcCCeeEEEEEcCCE-E-EEEECCCcEEEcCEEEECCCH
Confidence            47899999999999876444 3 578889989999999999864

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=97.07  E-value=0.00048  Score=61.70  Aligned_cols=34  Identities=15%  Similarity=0.224  Sum_probs=31.9

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  168 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  168 (414)
                      .|+|||+|++|+.+|..|++.|.+|+|+++.+.+
T Consensus         4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~   37 (336)
T 3kkj_A            4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGS   37 (336)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence            5999999999999999999999999999988765

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=96.84  E-value=0.0063  Score=62.83  Aligned_cols=33  Identities=24%  Similarity=0.449  Sum_probs=29.8

Q ss_pred             CeEEEECCChHHHHHHHHHH---h-CCCcEEEEeeCC
Q 014997          134 KKVVVVGGGYIGMEVAAAAV---G-WKLDTTIIFPEN  166 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~---~-~g~~Vtlv~~~~  166 (414)
                      -.|+|||+|..|+-+|..|+   + .|.+|+|+++.+
T Consensus        23 ~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~   59 (643)
T 1jnr_A           23 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAA   59 (643)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcC
Confidence            47999999999999999999   6 899999999764

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=96.76  E-value=0.0012  Score=56.12  Aligned_cols=48  Identities=17%  Similarity=0.096  Sum_probs=39.8

Q ss_pred             CCHhHHHHcCCeEEcCCcEEEEeCCC--CEEEeCCCcEEecCeEEEccCCCC
Q 014997           51 QTPEWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTA  100 (414)
Q Consensus        51 ~~~~~~~~~~i~~~~~~~V~~id~~~--~~V~~~~g~~~~yd~LviAtG~~~  100 (414)
                      ...+.+++.|++++.+ +|++++.++  ..|++++| ++.+|+||+|||.++
T Consensus        61 ~l~~~~~~~gv~v~~~-~v~~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~~~  110 (180)
T 2ywl_A           61 RLEAHARRYGAEVRPG-VVKGVRDMGGVFEVETEEG-VEKAERLLLCTHKDP  110 (180)
T ss_dssp             HHHHHHHHTTCEEEEC-CCCEEEECSSSEEEECSSC-EEEEEEEEECCTTCC
T ss_pred             HHHHHHHHcCCEEEeC-EEEEEEEcCCEEEEEECCC-EEEECEEEECCCCCC
Confidence            3456677889999998 999998654  36788888 799999999999986

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=96.75  E-value=0.0069  Score=61.10  Aligned_cols=31  Identities=29%  Similarity=0.281  Sum_probs=29.2

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      .++|||+|+.|+.+|..++++|.+|.+|++.
T Consensus        44 DviVIG~GpaG~~aA~~aa~~G~kValIE~~   74 (542)
T 4b1b_A           44 DYVVIGGGPGGMASAKEAAAHGARVLLFDYV   74 (542)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECCC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            6999999999999999999999999999853

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=96.62  E-value=0.002  Score=63.61  Aligned_cols=88  Identities=20%  Similarity=0.137  Sum_probs=63.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEE
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  211 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~  211 (414)
                      .+++|.|||.|.+|+.+|..|.++|.+|++.+..+.-.    ++     ..+.|++.||+++.+....++          
T Consensus         8 ~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~----~~-----~~~~L~~~gi~~~~g~~~~~~----------   68 (451)
T 3lk7_A            8 ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDE----NP-----TAQSLLEEGIKVVCGSHPLEL----------   68 (451)
T ss_dssp             TTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGG----CH-----HHHHHHHTTCEEEESCCCGGG----------
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccC----Ch-----HHHHHHhCCCEEEECCChHHh----------
Confidence            57899999999999999999999999999998765211    11     234578889999876531100          


Q ss_pred             EEeCCCcEEecCEEEEccCCcCCChhh---hhcCCc
Q 014997          212 VKLEDGSTIDADTIVIGIGAKPTVSPF---ERVGLN  244 (414)
Q Consensus       212 v~~~~g~~i~~D~vi~a~G~~p~~~~l---~~~gl~  244 (414)
                        +.+    .+|.||+++|..++.+.+   ++.|++
T Consensus        69 --~~~----~~d~vv~spgi~~~~p~~~~a~~~gi~   98 (451)
T 3lk7_A           69 --LDE----DFCYMIKNPGIPYNNPMVKKALEKQIP   98 (451)
T ss_dssp             --GGS----CEEEEEECTTSCTTSHHHHHHHHTTCC
T ss_pred             --hcC----CCCEEEECCcCCCCChhHHHHHHCCCc
Confidence              010    179999999998877654   344554

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=96.51  E-value=0.013  Score=58.61  Aligned_cols=102  Identities=15%  Similarity=0.170  Sum_probs=68.4

Q ss_pred             eEEEECCChHHHHHHHHHHhCC--------------CcEEEEeeCCcc-------cc-----------------------
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWK--------------LDTTIIFPENHL-------LQ-----------------------  170 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g--------------~~Vtlv~~~~~~-------l~-----------------------  170 (414)
                      .|+|||+|+.|+-+|..|.+.|              .....+++.+.+       ++                       
T Consensus        41 Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~Wh~g~~~p~~~~q~~fl~Dlvtl~~P~s~~s  120 (501)
T 4b63_A           41 DLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFAWHSGMLVPGSKMQISFIKDLATLRDPRSSFT  120 (501)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCCSSGGGCCTTCBCSSCGGGSSSTTTCTTCTTS
T ss_pred             cEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCCcCCCCCCCCccccccchhhhccccCCCCccc
Confidence            5999999999999999987643              245566665421       00                       


Q ss_pred             ------------------ccc--CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCC------cEEEEEeCCC-----cE
Q 014997          171 ------------------RLF--TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG------RVAAVKLEDG-----ST  219 (414)
Q Consensus       171 ------------------~~~--~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~------~~~~v~~~~g-----~~  219 (414)
                                        ..+  -.++.++++...++.+..+.++++|++++..+.+      ....|+..++     ++
T Consensus       121 f~~yl~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~  200 (501)
T 4b63_A          121 FLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISA  200 (501)
T ss_dssp             HHHHHHHHTCHHHHHTTCCSCCBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEE
T ss_pred             hHHHHHHhCCccCCccccCCCCCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEE
Confidence                              000  1245566666666677788999999999754322      1234555433     36


Q ss_pred             EecCEEEEccCCcCCCh
Q 014997          220 IDADTIVIGIGAKPTVS  236 (414)
Q Consensus       220 i~~D~vi~a~G~~p~~~  236 (414)
                      +.|+.||+|+|..|+..
T Consensus       201 ~~ar~vVlatG~~P~iP  217 (501)
T 4b63_A          201 RRTRKVVIAIGGTAKMP  217 (501)
T ss_dssp             EEEEEEEECCCCEECCC
T ss_pred             EEeCEEEECcCCCCCCC
Confidence            88999999999988754

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=96.49  E-value=0.0035  Score=59.05  Aligned_cols=80  Identities=23%  Similarity=0.231  Sum_probs=58.6

Q ss_pred             CCCeEEEECCChHHHH-HHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEE
Q 014997          132 KAKKVVVVGGGYIGME-VAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  210 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e-~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~  210 (414)
                      ..+++.|||.|-+|+. +|..|.++|.+|++.+..+.      ++     ..+.|++.|++++.+.....          
T Consensus         3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~------~~-----~~~~L~~~gi~v~~g~~~~~----------   61 (326)
T 3eag_A            3 AMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY------PP-----MSTQLEALGIDVYEGFDAAQ----------   61 (326)
T ss_dssp             CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC------TT-----HHHHHHHTTCEEEESCCGGG----------
T ss_pred             CCcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC------cH-----HHHHHHhCCCEEECCCCHHH----------
Confidence            3578999999999997 88899999999999987653      11     23457788999886532100          


Q ss_pred             EEEeCCCcEEecCEEEEccCCcCCChhh
Q 014997          211 AVKLEDGSTIDADTIVIGIGAKPTVSPF  238 (414)
Q Consensus       211 ~v~~~~g~~i~~D~vi~a~G~~p~~~~l  238 (414)
                         +..   -.+|.||+++|..|+.+.+
T Consensus        62 ---l~~---~~~d~vV~Spgi~~~~p~~   83 (326)
T 3eag_A           62 ---LDE---FKADVYVIGNVAKRGMDVV   83 (326)
T ss_dssp             ---GGS---CCCSEEEECTTCCTTCHHH
T ss_pred             ---cCC---CCCCEEEECCCcCCCCHHH
Confidence               100   1479999999999887654

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=96.48  E-value=0.0066  Score=62.75  Aligned_cols=32  Identities=25%  Similarity=0.416  Sum_probs=29.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhC------CCcEEEEeeC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGW------KLDTTIIFPE  165 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~------g~~Vtlv~~~  165 (414)
                      -.|+|||+|..|+-+|..|++.      |.+|+|+++.
T Consensus        23 ~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~   60 (662)
T 3gyx_A           23 VDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKA   60 (662)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred             cCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEec
Confidence            4699999999999999999997      9999999974

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=96.46  E-value=0.0033  Score=64.43  Aligned_cols=85  Identities=11%  Similarity=0.151  Sum_probs=55.9

Q ss_pred             HHHH-cCCeEEcCCcEEEEeCCCC---EEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhh
Q 014997           55 WYKE-KGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL  130 (414)
Q Consensus        55 ~~~~-~~i~~~~~~~V~~id~~~~---~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~  130 (414)
                      .+++ .|++++ +++|+.+..++.   .|.+.+|.++.+|.||+|||+.+.. +..     +|....             
T Consensus       133 ~Le~~~GV~I~-~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt~s~~-~~i-----~G~~~~-------------  192 (651)
T 3ces_A          133 ALENQPNLMIF-QQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDG-KIH-----IGLDNY-------------  192 (651)
T ss_dssp             HHHTCTTEEEE-ECCEEEEEESSSBEEEEEETTSEEEEEEEEEECCSTTTCC-EEE-----CC-----------------
T ss_pred             HHHhCCCCEEE-EEEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCCCccC-ccc-----cCcccC-------------
Confidence            4455 599995 469999976543   4678889889999999999998653 222     232211             


Q ss_pred             cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEee
Q 014997          131 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP  164 (414)
Q Consensus       131 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~  164 (414)
                       .+.+   +| |.+++++|..|.+.|.+|+.+..
T Consensus       193 -~~gr---iG-g~~a~eLA~~L~~lG~~v~~~~t  221 (651)
T 3ces_A          193 -SGGR---AG-DPPSIPLSRRLRELPLRVGRLKT  221 (651)
T ss_dssp             --------------CCHHHHHHHTTTCCEEEECC
T ss_pred             -CCCC---cc-chhhhHHHHHHHhcCCeEEEecC
Confidence             1222   56 78999999999999999988753

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.07  E-value=0.0091  Score=52.74  Aligned_cols=107  Identities=15%  Similarity=0.232  Sum_probs=67.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEE
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  211 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~  211 (414)
                      .+++|+|||||.+|...+..|.+.|.+|+++.+.       +.++    +.+..++.+++++...    +.         
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~-------~~~~----l~~l~~~~~i~~i~~~----~~---------   85 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT-------VSAE----INEWEAKGQLRVKRKK----VG---------   85 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS-------CCHH----HHHHHHTTSCEEECSC----CC---------
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC-------CCHH----HHHHHHcCCcEEEECC----CC---------
Confidence            6899999999999999999999999999999753       2233    3344455567766432    11         


Q ss_pred             EEeCCCcEEecCEEEEccCCcCCChhhhhcCCcccCCCEEEcC-----CCCCCCCcEEEEcccc
Q 014997          212 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDG-----QFRTRMPGIFAIGDVA  270 (414)
Q Consensus       212 v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~g~i~vd~-----~~~t~~~~IyA~GD~a  270 (414)
                          .+..-.+|+||.|||.......+...   .. .+|.||-     .+.-..|-++--|+..
T Consensus        86 ----~~dL~~adLVIaAT~d~~~N~~I~~~---ak-~gi~VNvvD~p~~~~f~~Paiv~rg~l~  141 (223)
T 3dfz_A           86 ----EEDLLNVFFIVVATNDQAVNKFVKQH---IK-NDQLVNMASSFSDGNIQIPAQFSRGRLS  141 (223)
T ss_dssp             ----GGGSSSCSEEEECCCCTHHHHHHHHH---SC-TTCEEEC-----CCSEECCEEEEETTEE
T ss_pred             ----HhHhCCCCEEEECCCCHHHHHHHHHH---Hh-CCCEEEEeCCcccCeEEEeeEEEeCCEE
Confidence                11112489999999876433333222   11 3455542     2222457777667654

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=95.60  E-value=0.0096  Score=59.23  Aligned_cols=39  Identities=26%  Similarity=0.339  Sum_probs=35.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ  170 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  170 (414)
                      ..++|+|||+|.+|+.+|..|++.|.+|+|+++.+++..
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg   70 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGG   70 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCC
Confidence            357899999999999999999999999999999876644

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=95.52  E-value=0.0099  Score=58.10  Aligned_cols=34  Identities=21%  Similarity=0.360  Sum_probs=31.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      .++|+|||||+.|+.+|..|++.|.+|+|+++.+
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            3689999999999999999999999999999875

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=95.50  E-value=0.014  Score=56.74  Aligned_cols=37  Identities=22%  Similarity=0.348  Sum_probs=33.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCC-CcEEEEeeCCcc
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHL  168 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~~  168 (414)
                      +..+|+|||+|..|+-+|..|++.| .+|+|+++.+++
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~   42 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHV   42 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCC
Confidence            4578999999999999999999999 899999988765

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=95.42  E-value=0.012  Score=58.07  Aligned_cols=34  Identities=21%  Similarity=0.348  Sum_probs=31.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCC--cEEEEeeCCc
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENH  167 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~--~Vtlv~~~~~  167 (414)
                      ++|+|||||.+|+-+|..|++.|.  +|+|++++++
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~   38 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSER   38 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSS
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCC
Confidence            589999999999999999999999  9999998643

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=95.37  E-value=0.015  Score=55.71  Aligned_cols=33  Identities=24%  Similarity=0.292  Sum_probs=30.7

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      ++|+|||||..|+++|..+++.|.+|+++++.+
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~   34 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRP   34 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence            479999999999999999999999999999764

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=95.36  E-value=0.032  Score=55.10  Aligned_cols=58  Identities=16%  Similarity=0.315  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCc
Q 014997          175 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  232 (414)
Q Consensus       175 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~  232 (414)
                      .++.+.+.+.+++.|+++++++.|++|..++++++..|.+.+|+++.||.||+++++.
T Consensus       256 ~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~~  313 (475)
T 3p1w_A          256 GGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYV  313 (475)
T ss_dssp             THHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGGC
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCcc
Confidence            3677888888999999999999999998645778888999999999999999999988

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=95.34  E-value=0.016  Score=57.39  Aligned_cols=39  Identities=23%  Similarity=0.232  Sum_probs=34.8

Q ss_pred             cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc
Q 014997          131 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  169 (414)
Q Consensus       131 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l  169 (414)
                      .+..+|+|||+|..|+-+|..|++.|.+|+|+++.+++-
T Consensus         9 ~~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~G   47 (489)
T 2jae_A            9 KGSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPG   47 (489)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence            346789999999999999999999999999999887653

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=95.24  E-value=0.062  Score=50.18  Aligned_cols=85  Identities=13%  Similarity=0.148  Sum_probs=54.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEc--CceEEEEEecCCCcEEE
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVK--GASIKNLEAGSDGRVAA  211 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~--~~~v~~i~~~~~~~~~~  211 (414)
                      .+|.|||+|.+|.-+|..|++.|.+|+++.|.+.               +.+++.|+.+..  .... .+..     + .
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~---------------~~i~~~Gl~~~~~~~g~~-~~~~-----~-~   60 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSDY---------------ETVKAKGIRIRSATLGDY-TFRP-----A-A   60 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTTH---------------HHHHHHCEEEEETTTCCE-EECC-----S-C
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCChH---------------HHHHhCCcEEeecCCCcE-EEee-----e-e
Confidence            4799999999999999999999999999987530               234556766643  1111 0100     0 1


Q ss_pred             EEeCCC-cEE-ecCEEEEccCCcCCChhhhhc
Q 014997          212 VKLEDG-STI-DADTIVIGIGAKPTVSPFERV  241 (414)
Q Consensus       212 v~~~~g-~~i-~~D~vi~a~G~~p~~~~l~~~  241 (414)
                      +. .+- +.. ++|.||+|+......+.++..
T Consensus        61 ~~-~~~~~~~~~~DlVilavK~~~~~~~l~~l   91 (320)
T 3i83_A           61 VV-RSAAELETKPDCTLLCIKVVEGADRVGLL   91 (320)
T ss_dssp             EE-SCGGGCSSCCSEEEECCCCCTTCCHHHHH
T ss_pred             eE-CCHHHcCCCCCEEEEecCCCChHHHHHHH
Confidence            11 221 222 689999998887765555543

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=95.21  E-value=0.019  Score=54.99  Aligned_cols=37  Identities=24%  Similarity=0.402  Sum_probs=33.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC-Ccc
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHL  168 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~-~~~  168 (414)
                      ...+|+|||+|.+|+-+|..|.+.|.+|+|+++. +++
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~v   80 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRV   80 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCcEEEEecccccc
Confidence            3578999999999999999999999999999988 554

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=95.19  E-value=0.017  Score=56.91  Aligned_cols=40  Identities=15%  Similarity=0.047  Sum_probs=35.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR  171 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~  171 (414)
                      ...+|+|||+|..|+-+|..|++.|.+|+++++++++-.+
T Consensus        10 ~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~   49 (453)
T 2bcg_G           10 TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGE   49 (453)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGG
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCcc
Confidence            3467999999999999999999999999999999876543

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=95.16  E-value=0.022  Score=54.03  Aligned_cols=33  Identities=30%  Similarity=0.435  Sum_probs=30.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      ..+|+|||+|.+|+-+|..|+++|.+|+|+++.
T Consensus         6 ~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~   38 (363)
T 1c0p_A            6 QKRVVVLGSGVIGLSSALILARKGYSVHILARD   38 (363)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence            468999999999999999999999999999975

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=95.15  E-value=0.018  Score=57.65  Aligned_cols=36  Identities=22%  Similarity=0.422  Sum_probs=32.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCC-CcEEEEeeCCcc
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHL  168 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~~  168 (414)
                      ..+|+|||+|..|+-+|..|++.| .+|+|+++++++
T Consensus         8 ~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~ri   44 (516)
T 1rsg_A            8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRV   44 (516)
T ss_dssp             EEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCC
Confidence            358999999999999999999999 999999987654

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=95.11  E-value=0.022  Score=56.74  Aligned_cols=78  Identities=14%  Similarity=0.146  Sum_probs=57.5

Q ss_pred             cCCCeEEEECCChHHHH-HHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcE
Q 014997          131 EKAKKVVVVGGGYIGME-VAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV  209 (414)
Q Consensus       131 ~~~~~vvVvGgG~~g~e-~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~  209 (414)
                      ...++|.|||-|-+|+- +|..|.++|.+|+..+....       +     ..+.|++.|++++.+...       + . 
T Consensus        20 ~~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~-------~-----~~~~l~~~gi~~~~g~~~-------~-~-   78 (494)
T 4hv4_A           20 RRVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPN-------S-----VTQHLTALGAQIYFHHRP-------E-N-   78 (494)
T ss_dssp             --CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCC-------H-----HHHHHHHTTCEEESSCCG-------G-G-
T ss_pred             ccCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCC-------H-----HHHHHHHCCCEEECCCCH-------H-H-
Confidence            35689999999999996 89999999999999876531       1     124578889999876321       0 0 


Q ss_pred             EEEEeCCCcEEecCEEEEccCCcCCChhh
Q 014997          210 AAVKLEDGSTIDADTIVIGIGAKPTVSPF  238 (414)
Q Consensus       210 ~~v~~~~g~~i~~D~vi~a~G~~p~~~~l  238 (414)
                          +     -.+|.||+++|..++.+.+
T Consensus        79 ----~-----~~~d~vV~Spgi~~~~p~~   98 (494)
T 4hv4_A           79 ----V-----LDASVVVVSTAISADNPEI   98 (494)
T ss_dssp             ----G-----TTCSEEEECTTSCTTCHHH
T ss_pred             ----c-----CCCCEEEECCCCCCCCHHH
Confidence                1     1379999999998876653

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=95.08  E-value=0.018  Score=57.65  Aligned_cols=36  Identities=31%  Similarity=0.427  Sum_probs=32.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  168 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  168 (414)
                      ..+|+|||+|..|+-+|..|++.|.+|+|+++++++
T Consensus         4 ~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~   39 (520)
T 1s3e_A            4 KCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRV   39 (520)
T ss_dssp             BCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            357999999999999999999999999999987543

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=95.02  E-value=0.021  Score=56.41  Aligned_cols=37  Identities=30%  Similarity=0.418  Sum_probs=32.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  168 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  168 (414)
                      ...+|+|||+|..|+-+|..|++.|.+|+|+++.+++
T Consensus        15 ~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~   51 (478)
T 2ivd_A           15 TGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARL   51 (478)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCC
Confidence            4578999999999999999999999999999988654

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=94.87  E-value=0.066  Score=43.29  Aligned_cols=77  Identities=14%  Similarity=0.178  Sum_probs=50.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEE
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV  212 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v  212 (414)
                      .++++|+|.|..|..+|..|.+.|.+|+++++.+.         ..    +.+++.|+.++.+..      . +..   +
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~---------~~----~~~~~~g~~~i~gd~------~-~~~---~   63 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRT---------RV----DELRERGVRAVLGNA------A-NEE---I   63 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHH---------HH----HHHHHTTCEEEESCT------T-SHH---H
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHH---------HH----HHHHHcCCCEEECCC------C-CHH---H
Confidence            46899999999999999999999999999987542         11    234556777654321      0 000   0


Q ss_pred             EeCCCcEEecCEEEEccCCcC
Q 014997          213 KLEDGSTIDADTIVIGIGAKP  233 (414)
Q Consensus       213 ~~~~g~~i~~D~vi~a~G~~p  233 (414)
                      ...-+ .-.+|.+|++++...
T Consensus        64 l~~a~-i~~ad~vi~~~~~~~   83 (140)
T 3fwz_A           64 MQLAH-LECAKWLILTIPNGY   83 (140)
T ss_dssp             HHHTT-GGGCSEEEECCSCHH
T ss_pred             HHhcC-cccCCEEEEECCChH
Confidence            00001 125899999988654

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=94.85  E-value=0.0089  Score=58.69  Aligned_cols=79  Identities=18%  Similarity=0.185  Sum_probs=56.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEE
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  211 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~  211 (414)
                      .+++|+|||.|.+|+.+|..|.++|.+|+..+.......     .      ..++ .|+++..+...   . .      .
T Consensus         4 ~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~-----~------~~l~-~G~~~~~g~~~---~-~------~   61 (439)
T 2x5o_A            4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPG-----L------DKLP-EAVERHTGSLN---D-E------W   61 (439)
T ss_dssp             TTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTT-----G------GGSC-TTSCEEESSCC---H-H------H
T ss_pred             CCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcch-----h------HHhh-CCCEEEECCCc---H-H------H
Confidence            468999999999999999999999999999987653211     1      2345 78888765421   0 0      0


Q ss_pred             EEeCCCcEEecCEEEEccCCcCCChhhh
Q 014997          212 VKLEDGSTIDADTIVIGIGAKPTVSPFE  239 (414)
Q Consensus       212 v~~~~g~~i~~D~vi~a~G~~p~~~~l~  239 (414)
                        +    . .+|.||+++|..|+.+.+.
T Consensus        62 --~----~-~~d~vV~s~gi~~~~p~~~   82 (439)
T 2x5o_A           62 --L----M-AADLIVASPGIALAHPSLS   82 (439)
T ss_dssp             --H----H-TCSEEEECTTSCTTCHHHH
T ss_pred             --h----c-cCCEEEeCCCCCCCCHHHH
Confidence              1    1 4799999999987665543

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=94.80  E-value=0.026  Score=55.23  Aligned_cols=35  Identities=26%  Similarity=0.396  Sum_probs=32.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  168 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  168 (414)
                      .+|+|||+|..|+-+|..|++.|.+|+|+++.+++
T Consensus         6 ~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~   40 (453)
T 2yg5_A            6 RDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRV   40 (453)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence            57999999999999999999999999999987654

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=94.78  E-value=0.027  Score=55.99  Aligned_cols=37  Identities=30%  Similarity=0.378  Sum_probs=33.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  168 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  168 (414)
                      +..+|+|||+|..|+-+|..|++.|.+|+|+++.+++
T Consensus        12 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~   48 (504)
T 1sez_A           12 SAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKA   48 (504)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCC
Confidence            3578999999999999999999999999999998765

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=94.74  E-value=0.058  Score=51.42  Aligned_cols=46  Identities=15%  Similarity=0.264  Sum_probs=40.2

Q ss_pred             hHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCC
Q 014997           54 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTA  100 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~  100 (414)
                      +.+.+.|++++.+++|++++.+. .|++.+|+++.+|+||.|+|.+.
T Consensus       115 ~~~~~~gv~i~~~~~v~~i~~~~-~v~~~~g~~~~ad~vV~AdG~~s  160 (379)
T 3alj_A          115 NRARALGVDISVNSEAVAADPVG-RLTLQTGEVLEADLIVGADGVGS  160 (379)
T ss_dssp             HHHHHTTCEEESSCCEEEEETTT-EEEETTSCEEECSEEEECCCTTC
T ss_pred             HHHHhcCCEEEeCCEEEEEEeCC-EEEECCCCEEEcCEEEECCCccH
Confidence            44566799999999999998866 89999998999999999999875

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=94.72  E-value=0.029  Score=53.94  Aligned_cols=36  Identities=25%  Similarity=0.410  Sum_probs=32.7

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  169 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l  169 (414)
                      .+|+|||+|.+|+.+|..|++.|.+|+++++++++.
T Consensus         4 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~G   39 (384)
T 2bi7_A            4 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIG   39 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcC
Confidence            479999999999999999999999999999886653

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=94.59  E-value=0.048  Score=44.93  Aligned_cols=37  Identities=22%  Similarity=0.291  Sum_probs=33.3

Q ss_pred             cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc
Q 014997          131 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  167 (414)
Q Consensus       131 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  167 (414)
                      ..+++++|+|+|.+|..+|..|.+.|.+|+++.+.+.
T Consensus        17 ~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~   53 (155)
T 2g1u_A           17 QKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEY   53 (155)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            4678999999999999999999999999999988654

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=94.54  E-value=0.034  Score=53.64  Aligned_cols=36  Identities=19%  Similarity=0.293  Sum_probs=32.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  168 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  168 (414)
                      ..+++|||+|.+|+-+|..|++.|.+|+++++.+++
T Consensus        29 ~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~   64 (397)
T 3hdq_A           29 GFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHI   64 (397)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCC
Confidence            457999999999999999999999999999988665

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=94.52  E-value=0.033  Score=55.28  Aligned_cols=36  Identities=22%  Similarity=0.449  Sum_probs=33.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  168 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  168 (414)
                      ..+|+|||+|..|+-+|..|++.|.+|+|+++.+++
T Consensus        39 ~~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~   74 (495)
T 2vvm_A           39 PWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRI   74 (495)
T ss_dssp             CEEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBS
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            368999999999999999999999999999988665

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=94.40  E-value=0.026  Score=53.26  Aligned_cols=32  Identities=31%  Similarity=0.433  Sum_probs=29.7

Q ss_pred             eEEEECCChHHHHHHHHHHhCC------CcEEEEeeCC
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWK------LDTTIIFPEN  166 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g------~~Vtlv~~~~  166 (414)
                      +|+|||||.+|+-+|..|++.|      .+|+|+++..
T Consensus         2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~   39 (351)
T 3g3e_A            2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF   39 (351)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred             cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence            6999999999999999999998      8999999874

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=94.34  E-value=0.031  Score=54.02  Aligned_cols=36  Identities=19%  Similarity=0.388  Sum_probs=32.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhC-CCcEEEEeeCCcc
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPENHL  168 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~  168 (414)
                      ..+|+|||+|..|+-+|..|++. |.+|+|+++++++
T Consensus         7 ~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~   43 (399)
T 1v0j_A            7 RFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHI   43 (399)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            46899999999999999999998 9999999988655

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=94.14  E-value=0.037  Score=52.77  Aligned_cols=34  Identities=24%  Similarity=0.379  Sum_probs=31.3

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  168 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  168 (414)
                      +++|||+|..|+-+|..|++.|.+|+++++++++
T Consensus         3 ~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~   36 (367)
T 1i8t_A            3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHI   36 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            6899999999999999999999999999987654

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=94.11  E-value=0.035  Score=54.70  Aligned_cols=34  Identities=32%  Similarity=0.462  Sum_probs=31.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhCC--CcEEEEeeCCc
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENH  167 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~  167 (414)
                      .+|+|||+|.+|+-+|..|++.|  .+|+++++.++
T Consensus         5 ~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~   40 (475)
T 3lov_A            5 KRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGER   40 (475)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSS
T ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            58999999999999999999999  99999998644

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=94.00  E-value=0.051  Score=56.21  Aligned_cols=36  Identities=25%  Similarity=0.518  Sum_probs=32.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  167 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  167 (414)
                      .+++|+|||+|..|+.+|..|.+.|.+|+++++.++
T Consensus       106 ~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~  141 (662)
T 2z3y_A          106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDR  141 (662)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            457999999999999999999999999999998754

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=93.97  E-value=0.054  Score=57.49  Aligned_cols=35  Identities=23%  Similarity=0.502  Sum_probs=32.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  167 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  167 (414)
                      .++|+|||+|..|+.+|..|.+.|.+|+|+++.++
T Consensus       278 ~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~  312 (852)
T 2xag_A          278 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDR  312 (852)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCc
Confidence            46899999999999999999999999999997754

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=93.89  E-value=0.082  Score=43.36  Aligned_cols=33  Identities=12%  Similarity=0.136  Sum_probs=30.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      .++++|+|+|.+|..++..|.+.|.+|+++++.
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~   35 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNL   35 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence            568999999999999999999999999999875

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=93.79  E-value=0.071  Score=53.47  Aligned_cols=79  Identities=20%  Similarity=0.162  Sum_probs=57.5

Q ss_pred             CCCeEEEECCChHHHH-HHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEE
Q 014997          132 KAKKVVVVGGGYIGME-VAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  210 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e-~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~  210 (414)
                      +.+++.+||-|-+|+- +|..|.++|.+|+..+....      ++     ..+.|++.||+++.+.....          
T Consensus        18 ~~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~------~~-----~~~~L~~~gi~~~~G~~~~~----------   76 (524)
T 3hn7_A           18 QGMHIHILGICGTFMGSLALLARALGHTVTGSDANIY------PP-----MSTQLEQAGVTIEEGYLIAH----------   76 (524)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC------TT-----HHHHHHHTTCEEEESCCGGG----------
T ss_pred             cCCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCC------cH-----HHHHHHHCCCEEECCCCHHH----------
Confidence            6789999999999997 58888999999999987542      11     23457788999886532100          


Q ss_pred             EEEeCCCcEEecCEEEEccCCcCCChhh
Q 014997          211 AVKLEDGSTIDADTIVIGIGAKPTVSPF  238 (414)
Q Consensus       211 ~v~~~~g~~i~~D~vi~a~G~~p~~~~l  238 (414)
                         +.    -.+|+||+++|..++.+.+
T Consensus        77 ---~~----~~~d~vV~Spgi~~~~p~l   97 (524)
T 3hn7_A           77 ---LQ----PAPDLVVVGNAMKRGMDVI   97 (524)
T ss_dssp             ---GC----SCCSEEEECTTCCTTSHHH
T ss_pred             ---cC----CCCCEEEECCCcCCCCHHH
Confidence               00    1479999999998877654

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=93.79  E-value=0.054  Score=55.32  Aligned_cols=48  Identities=17%  Similarity=0.213  Sum_probs=35.4

Q ss_pred             hHHHHcC-CeEEcCCcEEEEeCCCCE---EE---eCCCc--EEecCeEEEccCCCCC
Q 014997           54 EWYKEKG-IEMIYQDPVTSIDIEKQT---LI---TNSGK--LLKYGSLIVATGCTAS  101 (414)
Q Consensus        54 ~~~~~~~-i~~~~~~~V~~id~~~~~---V~---~~~g~--~~~yd~LviAtG~~~~  101 (414)
                      +.+.+.+ |+++.+++|+++..+...   |.   +.+|+  .+.++.||+|||....
T Consensus       142 ~~~~~~gnv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~s~  198 (602)
T 1kf6_A          142 QTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGR  198 (602)
T ss_dssp             HHHTTCTTEEEEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGG
T ss_pred             HHHHhCCCcEEEeCCEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCCcc
Confidence            3445567 999999999998765442   22   25776  6899999999998643

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=93.72  E-value=0.094  Score=51.36  Aligned_cols=48  Identities=23%  Similarity=0.473  Sum_probs=39.4

Q ss_pred             HhHHHHcCCeEEcCCcEEEEeCCCC---EEEeCCCcEEecCeEEEccCCCC
Q 014997           53 PEWYKEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTA  100 (414)
Q Consensus        53 ~~~~~~~~i~~~~~~~V~~id~~~~---~V~~~~g~~~~yd~LviAtG~~~  100 (414)
                      .+.+++.||+++.+++|+++..++.   .|.+.+|+++.+|.||+|||...
T Consensus       141 ~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~Ad~VVlAtGg~s  191 (447)
T 2i0z_A          141 LTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKS  191 (447)
T ss_dssp             HHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCEEECCCCSS
T ss_pred             HHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCCEEECCEEEECCCCCc
Confidence            3455678999999999999975443   47788887899999999999876

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=93.70  E-value=0.09  Score=48.85  Aligned_cols=85  Identities=16%  Similarity=0.166  Sum_probs=52.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEE
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK  213 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~  213 (414)
                      .+|.|||+|.+|.-+|..|++.|.+|+++.|.+  .             +.+++.|+.+.....-..+..     + .+ 
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~-------------~~i~~~g~~~~~~~g~~~~~~-----~-~~-   60 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD--Y-------------EAIAGNGLKVFSINGDFTLPH-----V-KG-   60 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT--H-------------HHHHHTCEEEEETTCCEEESC-----C-CE-
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc--H-------------HHHHhCCCEEEcCCCeEEEee-----c-ee-
Confidence            479999999999999999999999999998743  0             234667877653110000100     0 01 


Q ss_pred             eCCCc-EEecCEEEEccCCcCCChhhhh
Q 014997          214 LEDGS-TIDADTIVIGIGAKPTVSPFER  240 (414)
Q Consensus       214 ~~~g~-~i~~D~vi~a~G~~p~~~~l~~  240 (414)
                      +.+-+ .-++|.||+|+......+.++.
T Consensus        61 ~~~~~~~~~~D~vilavk~~~~~~~l~~   88 (312)
T 3hn2_A           61 YRAPEEIGPMDLVLVGLKTFANSRYEEL   88 (312)
T ss_dssp             ESCHHHHCCCSEEEECCCGGGGGGHHHH
T ss_pred             ecCHHHcCCCCEEEEecCCCCcHHHHHH
Confidence            11111 1268999999877655444443

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=93.66  E-value=0.077  Score=51.59  Aligned_cols=50  Identities=18%  Similarity=0.367  Sum_probs=40.4

Q ss_pred             hHHHHcCCeEEcCC---cEEEEeCCCC--E-EEeCCCcEEecCeEEEccCCCCCCC
Q 014997           54 EWYKEKGIEMIYQD---PVTSIDIEKQ--T-LITNSGKLLKYGSLIVATGCTASRF  103 (414)
Q Consensus        54 ~~~~~~~i~~~~~~---~V~~id~~~~--~-V~~~~g~~~~yd~LviAtG~~~~~~  103 (414)
                      +.+++.|++++.++   +|++|..++.  . |++.+|+++.+|+||+|||+....+
T Consensus       169 ~~a~~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~~G~~i~Ad~VV~AtG~~s~~l  224 (438)
T 3dje_A          169 REAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAGASAGQF  224 (438)
T ss_dssp             HHHHHTTCEEEESTTTTCEEEEEEETTEEEEEEETTTEEEECSEEEECCGGGGGGT
T ss_pred             HHHHhcCCEEEeCCcCceEEEEEecCCeEEEEEECCCCEEECCEEEECCCCChhhh
Confidence            44567899999998   9999976554  3 7788898899999999999865433

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=93.61  E-value=0.074  Score=52.76  Aligned_cols=37  Identities=16%  Similarity=0.205  Sum_probs=33.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCC-CcEEEEeeCCcc
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHL  168 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~~  168 (414)
                      ...+|+|||+|..|+-+|..|++.| .+|+++++.+++
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~   45 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTP   45 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSS
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence            3568999999999999999999998 799999988655

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=93.56  E-value=0.079  Score=52.14  Aligned_cols=78  Identities=12%  Similarity=0.139  Sum_probs=53.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEE
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  211 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~  211 (414)
                      ++++|+|||+|.+|...+..|.+.|.+|+++.+..       .++    +.+..++.+++++.+.    +.         
T Consensus        11 ~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~-------~~~----~~~l~~~~~i~~~~~~----~~---------   66 (457)
T 1pjq_A           11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALTF-------IPQ----FTVWANEGMLTLVEGP----FD---------   66 (457)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC-------CHH----HHHHHTTTSCEEEESS----CC---------
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCC-------CHH----HHHHHhcCCEEEEECC----CC---------
Confidence            57899999999999999999999999999998632       222    2333334567665432    11         


Q ss_pred             EEeCCCcEEecCEEEEccCCc-CCChh
Q 014997          212 VKLEDGSTIDADTIVIGIGAK-PTVSP  237 (414)
Q Consensus       212 v~~~~g~~i~~D~vi~a~G~~-p~~~~  237 (414)
                          .+..-.+|+||.++|.. .|...
T Consensus        67 ----~~~l~~~~lVi~at~~~~~n~~i   89 (457)
T 1pjq_A           67 ----ETLLDSCWLAIAATDDDTVNQRV   89 (457)
T ss_dssp             ----GGGGTTCSEEEECCSCHHHHHHH
T ss_pred             ----ccccCCccEEEEcCCCHHHHHHH
Confidence                11111479999999987 35444

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=93.42  E-value=0.1  Score=42.06  Aligned_cols=33  Identities=9%  Similarity=0.083  Sum_probs=30.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      .++++|+|+|.+|..+|..|.+.|.+|+++++.
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~   38 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKS   38 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECC
Confidence            478999999999999999999999999999874

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=93.34  E-value=0.18  Score=46.95  Aligned_cols=33  Identities=18%  Similarity=0.302  Sum_probs=28.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      ...+|.|||+|..|.-+|..|++.|.+|+++ +.
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~   50 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAGHEVILI-AR   50 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CC
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-Ec
Confidence            4578999999999999999999999999998 54

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=93.27  E-value=0.05  Score=55.62  Aligned_cols=85  Identities=11%  Similarity=0.132  Sum_probs=57.2

Q ss_pred             HHHH-cCCeEEcCCcEEEEeCCCCE---EEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhh
Q 014997           55 WYKE-KGIEMIYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL  130 (414)
Q Consensus        55 ~~~~-~~i~~~~~~~V~~id~~~~~---V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~  130 (414)
                      .+++ .|++++. .+|+.+..++..   |.+.+|+++.+|.||+|||+.+.... .     .+.....            
T Consensus       126 ~l~~~~GV~I~~-~~V~~L~~d~g~V~GV~t~~G~~i~Ad~VVLATG~~s~~~i-~-----~G~~~~~------------  186 (641)
T 3cp8_A          126 IVEHEPNIDLLQ-DTVIGVSANSGKFSSVTVRSGRAIQAKAAILACGTFLNGLI-H-----IGMDHFP------------  186 (641)
T ss_dssp             HHHTCTTEEEEE-CCEEEEEEETTEEEEEEETTSCEEEEEEEEECCTTCBTCEE-E-----ETTEEEE------------
T ss_pred             HHHhCCCCEEEe-eEEEEEEecCCEEEEEEECCCcEEEeCEEEECcCCCCCccc-e-----eeeeeec------------
Confidence            3445 4899975 589988765543   67888889999999999999764321 1     1111110            


Q ss_pred             cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEe
Q 014997          131 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF  163 (414)
Q Consensus       131 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~  163 (414)
                        +.+++   |+.+++++|..|.+.|.+|..+.
T Consensus       187 --~g~~v---G~~~a~~la~~L~~~G~kv~~l~  214 (641)
T 3cp8_A          187 --GGRST---AEPPVEGLTESLASLGFSFGRLK  214 (641)
T ss_dssp             --CSSST---TSCCBCSHHHHHHHTTCCEEEEE
T ss_pred             --ccccc---CCchhhhhHHHHHhCCceEEeec
Confidence              11221   46788899999999999887553

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=93.23  E-value=0.1  Score=46.03  Aligned_cols=47  Identities=13%  Similarity=0.122  Sum_probs=36.9

Q ss_pred             hHHHHc-CCeEEcCCcEEEEeCCCC---EEEeCCCcEEecCeEEEccCCCCC
Q 014997           54 EWYKEK-GIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTAS  101 (414)
Q Consensus        54 ~~~~~~-~i~~~~~~~V~~id~~~~---~V~~~~g~~~~yd~LviAtG~~~~  101 (414)
                      +.+++. |++++. ++|+++..++.   .|.+.+|+++.+|+||+|||....
T Consensus        76 ~~~~~~~gv~i~~-~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~  126 (232)
T 2cul_A           76 YLLEGLRPLHLFQ-ATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLG  126 (232)
T ss_dssp             HHHHTCTTEEEEE-CCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSS
T ss_pred             HHHHcCCCcEEEE-eEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChh
Confidence            445565 999985 69999986543   467788888999999999998653

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=93.21  E-value=0.11  Score=41.39  Aligned_cols=33  Identities=18%  Similarity=0.250  Sum_probs=29.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      +.+++|+|+|.+|..+|..|.+.|.+|+++++.
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~   36 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDID   36 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            357999999999999999999999999998764

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=93.17  E-value=0.14  Score=51.50  Aligned_cols=49  Identities=20%  Similarity=0.300  Sum_probs=40.9

Q ss_pred             HhHHHHcCCeEEcCCcEEEEeCCCC---EEEeCCCcEEecCeEEEccCCCCC
Q 014997           53 PEWYKEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTAS  101 (414)
Q Consensus        53 ~~~~~~~~i~~~~~~~V~~id~~~~---~V~~~~g~~~~yd~LviAtG~~~~  101 (414)
                      .+.+++.|++++.+++|+++..++.   .|++++|+++.+|.||+|+|..++
T Consensus       227 ~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G~~i~Ad~VVlA~G~~s~  278 (549)
T 3nlc_A          227 RATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVGHSAR  278 (549)
T ss_dssp             HHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTSCEEECSCEEECCCTTCH
T ss_pred             HHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChh
Confidence            3445678999999999999987653   478889999999999999999863

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=93.15  E-value=0.1  Score=50.74  Aligned_cols=47  Identities=21%  Similarity=0.374  Sum_probs=38.5

Q ss_pred             HhHHHHcCCeEEcCCcEEEEeCCCC--EEEeCCCcEEecCeEEEccCCCC
Q 014997           53 PEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA  100 (414)
Q Consensus        53 ~~~~~~~~i~~~~~~~V~~id~~~~--~V~~~~g~~~~yd~LviAtG~~~  100 (414)
                      .+.+++.|++++++++|+++..++.  .|.+.+| ++.+|+||+|||..+
T Consensus       139 ~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~VIlAtG~~S  187 (417)
T 3v76_A          139 MAEMKEAGVQLRLETSIGEVERTASGFRVTTSAG-TVDAASLVVASGGKS  187 (417)
T ss_dssp             HHHHHHHTCEEECSCCEEEEEEETTEEEEEETTE-EEEESEEEECCCCSS
T ss_pred             HHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCc-EEEeeEEEECCCCcc
Confidence            3445677999999999999976544  6777777 799999999999875

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=92.98  E-value=0.095  Score=51.73  Aligned_cols=38  Identities=8%  Similarity=0.051  Sum_probs=34.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ  170 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  170 (414)
                      .-.|+|||+|..|+-+|..|++.|.+|.++++++++..
T Consensus        20 ~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg   57 (475)
T 3p1w_A           20 HYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGG   57 (475)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCG
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCC
Confidence            35799999999999999999999999999999876644

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=92.96  E-value=0.1  Score=40.24  Aligned_cols=33  Identities=27%  Similarity=0.281  Sum_probs=29.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCC-CcEEEEeeC
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPE  165 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g-~~Vtlv~~~  165 (414)
                      .++++|+|+|.+|..++..|.+.| .+|+++.+.
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~   38 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHD   38 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESC
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence            468999999999999999999999 888888775

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=92.95  E-value=0.097  Score=51.06  Aligned_cols=37  Identities=11%  Similarity=-0.038  Sum_probs=33.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  169 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l  169 (414)
                      ..+|+|||+|..|+-+|..|++.|.+|+++++++++-
T Consensus         6 ~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~g   42 (433)
T 1d5t_A            6 EYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYG   42 (433)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCcc
Confidence            4679999999999999999999999999999886553

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=92.88  E-value=0.11  Score=41.48  Aligned_cols=34  Identities=18%  Similarity=0.176  Sum_probs=30.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      ..++++|+|+|.+|..+|..|.+.|.+|+++++.
T Consensus         5 ~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~   38 (144)
T 2hmt_A            5 KNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN   38 (144)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3578999999999999999999999999988764

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=92.73  E-value=0.2  Score=46.33  Aligned_cols=77  Identities=19%  Similarity=0.314  Sum_probs=48.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEE
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK  213 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~  213 (414)
                      .+|.|||+|.+|.-+|..|. .|.+|+++.|.+.         -    .+.+++.|+.+..... ....        .+.
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~---------~----~~~l~~~G~~~~~~~~-~~~~--------~~~   59 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQE---------Q----AAAIQSEGIRLYKGGE-EFRA--------DCS   59 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHH---------H----HHHHHHHCEEEEETTE-EEEE--------CCE
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHH---------H----HHHHHhCCceEecCCC-eecc--------ccc
Confidence            47999999999999999999 9999999987531         1    1234556877753221 1111        111


Q ss_pred             eCCCcEEecCEEEEccCCcC
Q 014997          214 LEDGSTIDADTIVIGIGAKP  233 (414)
Q Consensus       214 ~~~g~~i~~D~vi~a~G~~p  233 (414)
                      ......-++|.||+|+-...
T Consensus        60 ~~~~~~~~~D~vilavK~~~   79 (307)
T 3ego_A           60 ADTSINSDFDLLVVTVKQHQ   79 (307)
T ss_dssp             EESSCCSCCSEEEECCCGGG
T ss_pred             ccccccCCCCEEEEEeCHHH
Confidence            11111235899999976543

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=92.52  E-value=0.15  Score=48.88  Aligned_cols=45  Identities=16%  Similarity=0.417  Sum_probs=37.3

Q ss_pred             HHHc-CCeEEcCCcEEEEeCCCC----EEEeCCCcEEecCeEEEccCCCC
Q 014997           56 YKEK-GIEMIYQDPVTSIDIEKQ----TLITNSGKLLKYGSLIVATGCTA  100 (414)
Q Consensus        56 ~~~~-~i~~~~~~~V~~id~~~~----~V~~~~g~~~~yd~LviAtG~~~  100 (414)
                      +++. |++++.+++|++++.+..    .|++++|+++.+|.||.|+|.+.
T Consensus       117 ~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~AdG~~s  166 (399)
T 2x3n_A          117 IDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGADGIAS  166 (399)
T ss_dssp             HTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECCCTTC
T ss_pred             hhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEECCCCCh
Confidence            3344 899999999999986543    67888898899999999999864

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=92.47  E-value=0.22  Score=48.10  Aligned_cols=46  Identities=17%  Similarity=0.270  Sum_probs=38.2

Q ss_pred             hHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCC
Q 014997           54 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT   99 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~   99 (414)
                      +.+++.|++++++++|++|+.++..+.+.+|+++.+|+||+|+|..
T Consensus       197 ~~~~~~G~~i~~~~~V~~i~~~~~~vV~~~g~~~~ad~Vv~a~~~~  242 (421)
T 3nrn_A          197 RIIMENKGKILTRKEVVEINIEEKKVYTRDNEEYSFDVAISNVGVR  242 (421)
T ss_dssp             HHHHTTTCEEESSCCEEEEETTTTEEEETTCCEEECSEEEECSCHH
T ss_pred             HHHHHCCCEEEcCCeEEEEEEECCEEEEeCCcEEEeCEEEECCCHH
Confidence            4456679999999999999987655555678889999999999974

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=92.44  E-value=0.14  Score=48.09  Aligned_cols=48  Identities=19%  Similarity=0.229  Sum_probs=39.0

Q ss_pred             HhHHHHcCCeEEcCCcEEEEeCCC---CEEEeCCC--cEEecCeEEEccCCCC
Q 014997           53 PEWYKEKGIEMIYQDPVTSIDIEK---QTLITNSG--KLLKYGSLIVATGCTA  100 (414)
Q Consensus        53 ~~~~~~~~i~~~~~~~V~~id~~~---~~V~~~~g--~~~~yd~LviAtG~~~  100 (414)
                      .+.+++.|++++.+++|+++..++   ..|.+++|  .++.+|+||+|+|...
T Consensus       157 ~~~~~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~a~~VV~A~G~~s  209 (369)
T 3dme_A          157 QGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRVLINAAGLHA  209 (369)
T ss_dssp             HHHHHHTTCEEECSCCEEEEEECTTSSEEEEECTTSCEEEEEEEEEECCGGGH
T ss_pred             HHHHHHCCCEEECCCEEEEEEEcCCceEEEEECCCceeEEEeCEEEECCCcch
Confidence            345667899999999999998753   36778887  4799999999999864

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=92.43  E-value=0.084  Score=48.03  Aligned_cols=34  Identities=24%  Similarity=0.492  Sum_probs=31.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      ++++|+|||||.+|...+..|.+.|.+|+++.+.
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~   45 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCC
Confidence            5799999999999999999999999999999864

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=92.29  E-value=0.13  Score=50.54  Aligned_cols=35  Identities=29%  Similarity=0.448  Sum_probs=31.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCC-cEEEEeeCCc
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENH  167 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~  167 (414)
                      ..+|+|||+|..|+-+|..|.+.|. +|+++++.++
T Consensus         4 ~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~   39 (472)
T 1b37_A            4 GPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDH   39 (472)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCC
Confidence            4689999999999999999999998 8999998643

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=92.09  E-value=0.32  Score=48.03  Aligned_cols=55  Identities=22%  Similarity=0.361  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHhCC-cEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCc
Q 014997          176 SLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  232 (414)
Q Consensus       176 ~~~~~~~~~l~~~g-v~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~  232 (414)
                      .+.+.+.+.+++.| +++++++.|++|+..+++ + .|.+.+|+++.||.||+|+|..
T Consensus       256 ~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~~~-v-~v~~~~g~~~~ad~vI~a~~~~  311 (495)
T 2vvm_A          256 AFARRFWEEAAGTGRLGYVFGCPVRSVVNERDA-A-RVTARDGREFVAKRVVCTIPLN  311 (495)
T ss_dssp             HHHHHHHHHHHTTTCEEEESSCCEEEEEECSSS-E-EEEETTCCEEEEEEEEECCCGG
T ss_pred             HHHHHHHHHhhhcCceEEEeCCEEEEEEEcCCE-E-EEEECCCCEEEcCEEEECCCHH
Confidence            56667777788888 999999999999865443 3 5778888889999999999963

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=91.88  E-value=0.15  Score=51.33  Aligned_cols=58  Identities=10%  Similarity=0.081  Sum_probs=39.5

Q ss_pred             cCCCCCCCCHhHHHH-cCCeEEcCCcEEEEeC-C-C------CE--EEeC---CCc--EEecCeEEEccCCCCC
Q 014997           44 VGSGGERQTPEWYKE-KGIEMIYQDPVTSIDI-E-K------QT--LITN---SGK--LLKYGSLIVATGCTAS  101 (414)
Q Consensus        44 ~g~~~~~~~~~~~~~-~~i~~~~~~~V~~id~-~-~------~~--V~~~---~g~--~~~yd~LviAtG~~~~  101 (414)
                      +|..+.....+.+++ .||+++.++.|+++.. + +      +.  |.+.   +|+  .+.+|.||+|||....
T Consensus       136 ~g~~l~~~L~~~~~~~~gv~i~~~~~v~~L~~~~~g~~~~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~  209 (540)
T 1chu_A          136 TGREVETTLVSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASK  209 (540)
T ss_dssp             ------CCCHHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGG
T ss_pred             CHHHHHHHHHHHHHcCCCCEEEeCcEEEEEEEcCCCCcccCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCccc
Confidence            455556667788888 7999999999999875 3 3      31  3333   565  6899999999998653

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=91.75  E-value=0.22  Score=46.31  Aligned_cols=38  Identities=21%  Similarity=0.240  Sum_probs=32.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  169 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l  169 (414)
                      ..++|.|||+|.+|.-+|..++..|.+|++++..+..+
T Consensus         5 ~~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l   42 (319)
T 3ado_A            5 AAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQI   42 (319)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHH
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHH
Confidence            35789999999999999999999999999998876543

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=91.64  E-value=0.17  Score=42.68  Aligned_cols=34  Identities=18%  Similarity=0.084  Sum_probs=30.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhC-CCcEEEEeeCC
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPEN  166 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~-g~~Vtlv~~~~  166 (414)
                      +++++|+|.|.+|..+|..|.+. |.+|+++++.+
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            56899999999999999999999 99999998753

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=91.62  E-value=0.19  Score=47.70  Aligned_cols=47  Identities=30%  Similarity=0.335  Sum_probs=38.0

Q ss_pred             HhHHHHcCCeEEcCCcEEEEeCCCC--E-EEeCCCcEEecCeEEEccCCCC
Q 014997           53 PEWYKEKGIEMIYQDPVTSIDIEKQ--T-LITNSGKLLKYGSLIVATGCTA  100 (414)
Q Consensus        53 ~~~~~~~~i~~~~~~~V~~id~~~~--~-V~~~~g~~~~yd~LviAtG~~~  100 (414)
                      .+.+++.|++++.+++|++++.++.  . |.+.+| ++.+|+||+|||...
T Consensus       156 ~~~~~~~Gv~i~~~~~v~~i~~~~~~v~gv~~~~g-~i~a~~VV~A~G~~s  205 (382)
T 1y56_B          156 AVKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNKG-IIKTGIVVNATNAWA  205 (382)
T ss_dssp             HHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             HHHHHHCCCEEECCceEEEEEEECCEEEEEEECCc-EEECCEEEECcchhH
Confidence            3556678999999999999986654  2 667777 799999999999864

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=91.36  E-value=0.13  Score=48.57  Aligned_cols=46  Identities=11%  Similarity=0.124  Sum_probs=37.2

Q ss_pred             hHHHHcCCeEEcCCcEEEEeCCCC--EEEeCCCcEEecCeEEEccCCCC
Q 014997           54 EWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA  100 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~~id~~~~--~V~~~~g~~~~yd~LviAtG~~~  100 (414)
                      +.+++.|++++.+++|+++..++.  .|++++| ++.+|+||+|||...
T Consensus       162 ~~a~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~VV~A~G~~s  209 (381)
T 3nyc_A          162 RGIRRNQGQVLCNHEALEIRRVDGAWEVRCDAG-SYRAAVLVNAAGAWC  209 (381)
T ss_dssp             HHHHHTTCEEESSCCCCEEEEETTEEEEECSSE-EEEESEEEECCGGGH
T ss_pred             HHHHHCCCEEEcCCEEEEEEEeCCeEEEEeCCC-EEEcCEEEECCChhH
Confidence            455678999999999999976543  5677777 799999999999853

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=91.34  E-value=0.23  Score=46.84  Aligned_cols=47  Identities=28%  Similarity=0.404  Sum_probs=37.6

Q ss_pred             hHHHHcCCeEEcCCcEEEEeCCCC--EEEeCCCcEEecCeEEEccCCCCC
Q 014997           54 EWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  101 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~~id~~~~--~V~~~~g~~~~yd~LviAtG~~~~  101 (414)
                      +.+++.|++++.+++|+++..++.  .|++++|+ +.+|+||+|||....
T Consensus       157 ~~~~~~G~~i~~~~~V~~i~~~~~~~~v~~~~g~-~~a~~vV~a~G~~s~  205 (372)
T 2uzz_A          157 QLAKEAGCAQLFNCPVTAIRHDDDGVTIETADGE-YQAKKAIVCAGTWVK  205 (372)
T ss_dssp             HHHHHTTCEEECSCCEEEEEECSSSEEEEESSCE-EEEEEEEECCGGGGG
T ss_pred             HHHHHCCCEEEcCCEEEEEEEcCCEEEEEECCCe-EEcCEEEEcCCccHH
Confidence            445678999999999999986543  56777775 999999999998643

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=91.25  E-value=0.18  Score=51.95  Aligned_cols=49  Identities=10%  Similarity=0.113  Sum_probs=35.8

Q ss_pred             HhHHHHcCCeEEcCCcEEEEeCCCCE---EEe---CCCc--EEecCeEEEccCCCCC
Q 014997           53 PEWYKEKGIEMIYQDPVTSIDIEKQT---LIT---NSGK--LLKYGSLIVATGCTAS  101 (414)
Q Consensus        53 ~~~~~~~~i~~~~~~~V~~id~~~~~---V~~---~~g~--~~~yd~LviAtG~~~~  101 (414)
                      .+.+.+.||+++.++.|+++..++..   |.+   .+|+  .+.+|.+|+|||....
T Consensus       165 ~~~a~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~  221 (660)
T 2bs2_A          165 ANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGR  221 (660)
T ss_dssp             HHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCCGG
T ss_pred             HHHHHhCCCEEEECcEEEEEEecCCEEEEEEEEECCCCcEEEEEcCEEEEccCcchh
Confidence            44556789999999999998654332   222   5675  4899999999998643

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=90.85  E-value=0.3  Score=50.44  Aligned_cols=48  Identities=17%  Similarity=0.282  Sum_probs=38.9

Q ss_pred             hHHHHcCCeEEcCCcEEEEeCCCC--EEEeCCCcEEecCeEEEccCCCCC
Q 014997           54 EWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  101 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~~id~~~~--~V~~~~g~~~~yd~LviAtG~~~~  101 (414)
                      +.+++.|++++.+++|+++..++.  .|.+.+|.++.+|.||+|||....
T Consensus       425 ~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~i~Ad~VVlAtG~~s~  474 (676)
T 3ps9_A          425 ELAQQQGLQIYYQYQLQNFSRKDDCWLLNFAGDQQATHSVVVLANGHQIS  474 (676)
T ss_dssp             HHHHHTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCGGGGG
T ss_pred             HHHHhCCCEEEeCCeeeEEEEeCCeEEEEECCCCEEECCEEEECCCcchh
Confidence            445678999999999999986554  556777778999999999998644

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=90.83  E-value=0.3  Score=48.21  Aligned_cols=47  Identities=9%  Similarity=0.209  Sum_probs=39.1

Q ss_pred             HhHHHHcCCeEEcCCcEEEEeCCCCE---EEeCCCcEEecCeEEEccCCC
Q 014997           53 PEWYKEKGIEMIYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGCT   99 (414)
Q Consensus        53 ~~~~~~~~i~~~~~~~V~~id~~~~~---V~~~~g~~~~yd~LviAtG~~   99 (414)
                      .+.+++.|.+++++++|++|..++..   |++++|+++.+|.||.+++..
T Consensus       228 ~~~~~~~Gg~I~~~~~V~~I~~~~~~~~gV~~~~g~~~~ad~VV~~a~~~  277 (501)
T 4dgk_A          228 IKLFQDLGGEVVLNARVSHMETTGNKIEAVHLEDGRRFLTQAVASNADVV  277 (501)
T ss_dssp             HHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSCEEECCC--
T ss_pred             HHHHHHhCCceeeecceeEEEeeCCeEEEEEecCCcEEEcCEEEECCCHH
Confidence            45567889999999999999877653   678999999999999998864

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=90.78  E-value=0.72  Score=47.15  Aligned_cols=59  Identities=17%  Similarity=0.142  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHhCCcEEEcCceEEEEEecCC-CcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997          176 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSD-GRVAAVKLEDGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       176 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~-~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (414)
                      .+.+.+.+.++..|.++++++.|.+|..+++ +++..|.+.+|+++.||.||......|.
T Consensus       379 ~L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~~~~lp~  438 (650)
T 1vg0_A          379 ELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSE  438 (650)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGBCT
T ss_pred             HHHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEEChhhcCH
Confidence            6778888899999999999999999976543 7787888888999999999998776664

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=90.75  E-value=0.43  Score=46.66  Aligned_cols=58  Identities=19%  Similarity=0.241  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHhCCcEEEcCceEEEEEecC-CCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997          176 SLAQRYEQLYQQNGVKFVKGASIKNLEAGS-DGRVAAVKLEDGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       176 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~-~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (414)
                      .+.+.+.+.+++.|.++++++.|++|.... ++++..|.+ +|+++.||.||+++|..+.
T Consensus       243 ~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~~~  301 (453)
T 2bcg_G          243 ELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADPTYFPE  301 (453)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECGGGCGG
T ss_pred             HHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CCeEEECCEEEECCCccch
Confidence            677778888899999999999999998642 566666766 5778999999999998754

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=90.68  E-value=0.12  Score=53.71  Aligned_cols=38  Identities=21%  Similarity=0.337  Sum_probs=34.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCC--------CcEEEEeeCC-cccc
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWK--------LDTTIIFPEN-HLLQ  170 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g--------~~Vtlv~~~~-~~l~  170 (414)
                      .++|+|||+|..|+-+|..|.+.|        .+|+|+++.+ ++..
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~~~  102 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSFLH  102 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBGGG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccccc
Confidence            368999999999999999999988        8999999998 8754

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=90.55  E-value=0.26  Score=45.86  Aligned_cols=34  Identities=12%  Similarity=0.049  Sum_probs=31.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCC-CcEEEEeeCC
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPEN  166 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g-~~Vtlv~~~~  166 (414)
                      ..+|.|||.|..|.-+|..|++.| .+|+++.+.+
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            368999999999999999999999 9999998765

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=90.31  E-value=0.4  Score=49.70  Aligned_cols=48  Identities=17%  Similarity=0.234  Sum_probs=38.2

Q ss_pred             hHHHHcCCeEEcCCcEEEEeCCCC--EEEeCCCc-EEecCeEEEccCCCCC
Q 014997           54 EWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGK-LLKYGSLIVATGCTAS  101 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~~id~~~~--~V~~~~g~-~~~yd~LviAtG~~~~  101 (414)
                      +.+++.|++++.+++|+++..++.  .|.+.+|. ++.+|.||+|||....
T Consensus       420 ~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~~i~Ad~VVlAtG~~s~  470 (689)
T 3pvc_A          420 MLAQQNGMTCHYQHELQRLKRIDSQWQLTFGQSQAAKHHATVILATGHRLP  470 (689)
T ss_dssp             HHHHHTTCEEEESCCEEEEEECSSSEEEEEC-CCCCEEESEEEECCGGGTT
T ss_pred             HHHHhCCCEEEeCCeEeEEEEeCCeEEEEeCCCcEEEECCEEEECCCcchh
Confidence            445678999999999999986543  56777876 7999999999998654

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=90.12  E-value=0.39  Score=43.79  Aligned_cols=37  Identities=22%  Similarity=0.238  Sum_probs=32.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  169 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l  169 (414)
                      -++|.|||+|.+|..+|..|++.|.+|+++++.+..+
T Consensus         4 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~   40 (283)
T 4e12_A            4 ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDAL   40 (283)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHH
Confidence            3789999999999999999999999999998776433

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=89.91  E-value=0.28  Score=46.74  Aligned_cols=47  Identities=19%  Similarity=0.249  Sum_probs=37.9

Q ss_pred             HhHHHHcCCeEEcCCcEEEEeCCCC---EEEeCCCcEEecCeEEEccCCCC
Q 014997           53 PEWYKEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTA  100 (414)
Q Consensus        53 ~~~~~~~~i~~~~~~~V~~id~~~~---~V~~~~g~~~~yd~LviAtG~~~  100 (414)
                      .+.+++.|++++.+++|+++..++.   .|++++| ++.+|+||+|+|...
T Consensus       181 ~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s  230 (405)
T 2gag_B          181 ARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTRG-TIHAGKVALAGAGHS  230 (405)
T ss_dssp             HHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTC-CEEEEEEEECCGGGH
T ss_pred             HHHHHHCCCEEEcCCeEEEEEEeCCEEEEEEeCCc-eEECCEEEECCchhH
Confidence            3446678999999999999986543   4677777 699999999999864

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=89.59  E-value=0.3  Score=46.16  Aligned_cols=46  Identities=24%  Similarity=0.289  Sum_probs=37.3

Q ss_pred             hHHHHcCCeEEcCCcEEEEeCCCC--EEEeCCCcEEecCeEEEccCCCC
Q 014997           54 EWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA  100 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~~id~~~~--~V~~~~g~~~~yd~LviAtG~~~  100 (414)
                      +.+++.|++++.+++|++++.++.  .|.+++| ++.+|+||+|+|...
T Consensus       172 ~~~~~~g~~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~s  219 (382)
T 1ryi_A          172 KAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWS  219 (382)
T ss_dssp             HHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGT
T ss_pred             HHHHHCCCEEEcCCcEEEEEEECCEEEEEcCCc-eEEcCEEEECCChhH
Confidence            445678999999999999987654  4667777 799999999999864

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=89.37  E-value=0.34  Score=48.69  Aligned_cols=56  Identities=18%  Similarity=0.310  Sum_probs=42.8

Q ss_pred             CCcEEEcCceEEEEEecCCCcEEEEEeCC---Cc--EE---ecCEEEEccCCcCCChhhhhcCCc
Q 014997          188 NGVKFVKGASIKNLEAGSDGRVAAVKLED---GS--TI---DADTIVIGIGAKPTVSPFERVGLN  244 (414)
Q Consensus       188 ~gv~i~~~~~v~~i~~~~~~~~~~v~~~~---g~--~i---~~D~vi~a~G~~p~~~~l~~~gl~  244 (414)
                      .|+++++++.|+++..+ ++++..|++.+   |+  ++   .++.||+|+|......+|..+|+.
T Consensus       209 ~~~~i~~~~~V~~i~~~-~~~~~gV~~~~~~~g~~~~~~v~~~~~VIlaaG~~~sp~lL~~sGig  272 (546)
T 1kdg_A          209 PNFTFKTNVMVSNVVRN-GSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIG  272 (546)
T ss_dssp             TTEEEECSCCEEEEEEE-TTEEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHHHHHHHHTTBS
T ss_pred             CCcEEEeCCEEEEEEEe-CCEEEEEEEEecCCCceeEEEEEeCCEEEEcCChhcCHHHHHHcCCC
Confidence            48999999999999764 46777888765   53  34   889999999986555677777764

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=89.30  E-value=0.39  Score=45.44  Aligned_cols=47  Identities=23%  Similarity=0.346  Sum_probs=37.2

Q ss_pred             HhHHHHcCCeEEcCCcEEEEeCCCC--EEEeCCCcEEecCeEEEccCCCC
Q 014997           53 PEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA  100 (414)
Q Consensus        53 ~~~~~~~~i~~~~~~~V~~id~~~~--~V~~~~g~~~~yd~LviAtG~~~  100 (414)
                      .+.+++.|++++.+++|++++.++.  .|++++| ++.+|+||+|+|...
T Consensus       157 ~~~~~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~  205 (389)
T 2gf3_A          157 RELAEARGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAWN  205 (389)
T ss_dssp             HHHHHHTTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGGH
T ss_pred             HHHHHHCCCEEEcCcEEEEEEecCCeEEEEeCCC-EEEeCEEEEecCccH
Confidence            3455678999999999999986543  5666666 699999999999864

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=89.16  E-value=0.69  Score=44.90  Aligned_cols=62  Identities=23%  Similarity=0.365  Sum_probs=42.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc-------cccCHHHHHHHHHHHHhCCcEEE
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------RLFTPSLAQRYEQLYQQNGVKFV  193 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-------~~~~~~~~~~~~~~l~~~gv~i~  193 (414)
                      .+.+..|||.|+.|+-+|..|++.|.+|+++++.+....       ....+.+.+.+.+.+....+.+-
T Consensus        10 ~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~t   78 (431)
T 3ojo_A           10 HGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVS   78 (431)
T ss_dssp             --CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEE
T ss_pred             cCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEe
Confidence            578899999999999999999999999999987753221       11234444455554444445443

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=89.06  E-value=0.42  Score=45.58  Aligned_cols=45  Identities=18%  Similarity=0.300  Sum_probs=35.8

Q ss_pred             hHHHHcCCeEEcCCcEEEEeCCCC--EEEeCCCcEEecCeEEEccCCC
Q 014997           54 EWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCT   99 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~~id~~~~--~V~~~~g~~~~yd~LviAtG~~   99 (414)
                      +.+++.|++++.+++|+++..++.  .|.+++| ++.+|+||+|+|..
T Consensus       161 ~~a~~~Gv~i~~~~~V~~i~~~~~~v~v~t~~g-~i~a~~VV~A~G~~  207 (397)
T 2oln_A          161 TLAQAAGATLRAGETVTELVPDADGVSVTTDRG-TYRAGKVVLACGPY  207 (397)
T ss_dssp             HHHHHTTCEEEESCCEEEEEEETTEEEEEESSC-EEEEEEEEECCGGG
T ss_pred             HHHHHcCCEEECCCEEEEEEEcCCeEEEEECCC-EEEcCEEEEcCCcC
Confidence            345678999999999999976553  4556555 69999999999986

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=88.95  E-value=0.51  Score=45.31  Aligned_cols=46  Identities=17%  Similarity=0.202  Sum_probs=37.2

Q ss_pred             HhHHHHcCCeEEcCCcEEEEeCCCCE---EEeCCCcEEecCeEEEccCCC
Q 014997           53 PEWYKEKGIEMIYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGCT   99 (414)
Q Consensus        53 ~~~~~~~~i~~~~~~~V~~id~~~~~---V~~~~g~~~~yd~LviAtG~~   99 (414)
                      .+.+++.|++++++++|++|..++..   |++ +|+++.+|.||+|+|..
T Consensus       203 ~~~~~~~G~~i~~~~~V~~i~~~~~~~~gv~~-~g~~~~ad~VV~a~~~~  251 (425)
T 3ka7_A          203 ETVISANGGKIHTGQEVSKILIENGKAAGIIA-DDRIHDADLVISNLGHA  251 (425)
T ss_dssp             HHHHHHTTCEEECSCCEEEEEEETTEEEEEEE-TTEEEECSEEEECSCHH
T ss_pred             HHHHHHcCCEEEECCceeEEEEECCEEEEEEE-CCEEEECCEEEECCCHH
Confidence            45566789999999999999876543   455 47789999999999974

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=88.91  E-value=0.43  Score=47.32  Aligned_cols=49  Identities=16%  Similarity=0.101  Sum_probs=38.0

Q ss_pred             HhHHHHcCCeEEcCCcEEEEeCC-----CCEEEe--C-CC--cEEecCeEEEccCCCCC
Q 014997           53 PEWYKEKGIEMIYQDPVTSIDIE-----KQTLIT--N-SG--KLLKYGSLIVATGCTAS  101 (414)
Q Consensus        53 ~~~~~~~~i~~~~~~~V~~id~~-----~~~V~~--~-~g--~~~~yd~LviAtG~~~~  101 (414)
                      .+.+++.|++++++++|+++..+     ...|++  . +|  +++.+|+||+|||.++.
T Consensus       173 ~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~  231 (497)
T 2bry_A          173 LKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFV  231 (497)
T ss_dssp             HHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCC
T ss_pred             HHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCcc
Confidence            34456679999999999999863     236666  4 56  47999999999998764

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=88.89  E-value=0.47  Score=41.58  Aligned_cols=35  Identities=14%  Similarity=0.233  Sum_probs=31.5

Q ss_pred             CCCeEEEECC-ChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          132 KAKKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       132 ~~~~vvVvGg-G~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      .+++|+|.|+ |.+|..++..|.+.|.+|+++.|.+
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   55 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNE   55 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECCh
Confidence            5789999997 9999999999999999999998865

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=88.89  E-value=0.27  Score=50.70  Aligned_cols=49  Identities=16%  Similarity=0.224  Sum_probs=33.7

Q ss_pred             HhHHHHc--CCeEEcCCcEEEEeCCCC---EE------EeCCCc--EEecCeEEEccCCCCC
Q 014997           53 PEWYKEK--GIEMIYQDPVTSIDIEKQ---TL------ITNSGK--LLKYGSLIVATGCTAS  101 (414)
Q Consensus        53 ~~~~~~~--~i~~~~~~~V~~id~~~~---~V------~~~~g~--~~~yd~LviAtG~~~~  101 (414)
                      .+.+++.  ||+++.++.|+++-.+..   .|      .+.+|+  .+.++.+|||||....
T Consensus       173 ~~~a~~~~~gV~i~~~~~v~dLi~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVLATGG~g~  234 (662)
T 3gyx_A          173 AEAAKNALGQDRIIERIFIVKLLLDKNTPNRIAGAVGFNLRANEVHIFKANAMVVACGGAVN  234 (662)
T ss_dssp             HHHHHHHHCTTTEECSEEECCCEECSSSTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCS
T ss_pred             HHHHHhcCCCcEEEEceEEEEEEEeCCccceEEEEEEEEcCCCcEEEEEeCEEEECCCcccc
Confidence            4455666  999999888877654432   22      124554  5899999999998653

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=88.88  E-value=0.32  Score=47.30  Aligned_cols=57  Identities=18%  Similarity=0.366  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997          176 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       176 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (414)
                      .+.+.+.+.+++.|+++++++.|++|... ++.+..+. .+|+++.||.||+++|..+.
T Consensus       235 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~-~~~v~~v~-~~g~~~~ad~VV~a~~~~~~  291 (433)
T 1d5t_A          235 ELPQGFARLSAIYGGTYMLNKPVDDIIME-NGKVVGVK-SEGEVARCKQLICDPSYVPD  291 (433)
T ss_dssp             HHHHHHHHHHHHHTCCCBCSCCCCEEEEE-TTEEEEEE-ETTEEEECSEEEECGGGCGG
T ss_pred             HHHHHHHHHHHHcCCEEECCCEEEEEEEe-CCEEEEEE-ECCeEEECCEEEECCCCCcc
Confidence            66777788888889999999999999864 45555555 47788999999999998764

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=88.66  E-value=0.2  Score=40.44  Aligned_cols=34  Identities=21%  Similarity=0.250  Sum_probs=30.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      .+++++|||+|.+|..++..|...|.+|+++.|.
T Consensus        20 ~~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~   53 (144)
T 3oj0_A           20 GGNKILLVGNGMLASEIAPYFSYPQYKVTVAGRN   53 (144)
T ss_dssp             CCCEEEEECCSHHHHHHGGGCCTTTCEEEEEESC
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence            4899999999999999999999999888887764

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=88.47  E-value=0.39  Score=41.77  Aligned_cols=32  Identities=25%  Similarity=0.403  Sum_probs=29.4

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      +++|+|+|..|..+|..|.+.|.+|+++++.+
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~   33 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDR   33 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            68999999999999999999999999998653

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=88.31  E-value=0.61  Score=45.05  Aligned_cols=50  Identities=14%  Similarity=0.234  Sum_probs=39.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcC
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG  195 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~  195 (414)
                      ..+|+|+|.|..|..+|..|.+.|.+|+++++.+.         ..    +.+++.|++++.+
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~---------~v----~~~~~~g~~vi~G   53 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPD---------HI----ETLRKFGMKVFYG   53 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHH---------HH----HHHHHTTCCCEES
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH---------HH----HHHHhCCCeEEEc
Confidence            46799999999999999999999999999987642         11    2345667776654

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=88.27  E-value=0.51  Score=44.54  Aligned_cols=32  Identities=22%  Similarity=0.327  Sum_probs=29.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      |+|+|+|||..|.+++..++++|.+|.+++..
T Consensus         2 K~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~   33 (363)
T 4ffl_A            2 KTICLVGGKLQGFEAAYLSKKAGMKVVLVDKN   33 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            68999999999999999999999999999865

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=88.26  E-value=0.49  Score=45.59  Aligned_cols=41  Identities=32%  Similarity=0.341  Sum_probs=34.3

Q ss_pred             HHcCCeEEcCCcEEEEeCCCC--EEEeCCCcEEecCeEEEccCC
Q 014997           57 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGC   98 (414)
Q Consensus        57 ~~~~i~~~~~~~V~~id~~~~--~V~~~~g~~~~yd~LviAtG~   98 (414)
                      ++.+ +++++++|++|+.++.  .|++.+|+++.+|+||+|+|.
T Consensus       215 ~~~g-~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vi~a~~~  257 (431)
T 3k7m_X          215 QEIP-EIRLQTVVTGIDQSGDVVNVTVKDGHAFQAHSVIVATPM  257 (431)
T ss_dssp             TTCS-CEESSCCEEEEECSSSSEEEEETTSCCEEEEEEEECSCG
T ss_pred             hhCC-ceEeCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCc
Confidence            3456 9999999999986543  677888888999999999994

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=88.25  E-value=0.61  Score=43.44  Aligned_cols=42  Identities=19%  Similarity=0.435  Sum_probs=35.2

Q ss_pred             HHcCCeEEcCCcEEEEeCCCC--EEEeCCCcEEecCeEEEccCC
Q 014997           57 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGC   98 (414)
Q Consensus        57 ~~~~i~~~~~~~V~~id~~~~--~V~~~~g~~~~yd~LviAtG~   98 (414)
                      ++.|++++++++|++|+.++.  +|++++|+.+.+|+||+|+..
T Consensus       120 ~~~g~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vV~A~p~  163 (342)
T 3qj4_A          120 KESGAEVYFRHRVTQINLRDDKWEVSKQTGSPEQFDLIVLTMPV  163 (342)
T ss_dssp             HHHTCEEESSCCEEEEEECSSSEEEEESSSCCEEESEEEECSCH
T ss_pred             HhcCCEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCH
Confidence            345899999999999987653  677788887899999999985

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=88.15  E-value=0.63  Score=42.04  Aligned_cols=34  Identities=21%  Similarity=0.299  Sum_probs=31.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      .++|+|.|+|++|..++..|.+.|.+|+.+.|..
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   36 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTAQGHEVTGLRRSA   36 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTT
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4689999999999999999999999999998865

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=88.00  E-value=1  Score=42.77  Aligned_cols=47  Identities=13%  Similarity=0.120  Sum_probs=37.7

Q ss_pred             HHHHcCCeEEcCCcEEEEeCCC---CEEEe-CCCc--EEecCeEEEccCCCCC
Q 014997           55 WYKEKGIEMIYQDPVTSIDIEK---QTLIT-NSGK--LLKYGSLIVATGCTAS  101 (414)
Q Consensus        55 ~~~~~~i~~~~~~~V~~id~~~---~~V~~-~~g~--~~~yd~LviAtG~~~~  101 (414)
                      .+.+.|++++.+++|+++..+.   ..|++ ++|+  ++.+|.||.|+|.+..
T Consensus       112 ~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV~AdG~~S~  164 (394)
T 1k0i_A          112 AREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHGI  164 (394)
T ss_dssp             HHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCCTTCS
T ss_pred             HHHhcCCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEEECCCCCcH
Confidence            3456799999999999998642   46776 6887  7999999999998653

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=87.93  E-value=0.44  Score=45.75  Aligned_cols=47  Identities=21%  Similarity=0.260  Sum_probs=37.0

Q ss_pred             hHHHHcCCeEEcCCcEEEEeCCCC----EEEeCCCc--EEecCeEEEccCCCC
Q 014997           54 EWYKEKGIEMIYQDPVTSIDIEKQ----TLITNSGK--LLKYGSLIVATGCTA  100 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~~id~~~~----~V~~~~g~--~~~yd~LviAtG~~~  100 (414)
                      +.+++.|++++.+++|++++.+..    .|.+.+|+  ++.+|.||.|+|...
T Consensus       114 ~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~s  166 (421)
T 3nix_A          114 DEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYGR  166 (421)
T ss_dssp             HHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCGGGC
T ss_pred             HHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCCCch
Confidence            344567999999999999986543    34557887  699999999999764

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=87.81  E-value=0.62  Score=44.72  Aligned_cols=35  Identities=23%  Similarity=0.238  Sum_probs=31.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      .+.+|+|+|+|.+|..+|..+..+|.+|+++++.+
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  223 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRP  223 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSST
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            46799999999999999999999999999888765

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=87.71  E-value=0.64  Score=40.21  Aligned_cols=35  Identities=11%  Similarity=0.159  Sum_probs=30.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      ...+|.|||.|.+|..+|..|++.|.+|+++.+.+
T Consensus        18 ~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~   52 (209)
T 2raf_A           18 QGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKD   52 (209)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            45789999999999999999999999999998764

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=87.68  E-value=0.72  Score=47.15  Aligned_cols=54  Identities=15%  Similarity=0.029  Sum_probs=42.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN  188 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~  188 (414)
                      -.++|+|+|..++-+|..|++.|++|.++++++++...+....+. .+.+++++.
T Consensus         9 ~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg~~~~~~l~-~l~~w~~~~   62 (650)
T 1vg0_A            9 FDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFS-GLLSWLKEY   62 (650)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHH-HHHHHHHHT
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccCccccccHH-HHHHHHHHh
Confidence            479999999999999999999999999999999887665544433 344444443

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=87.66  E-value=0.45  Score=45.27  Aligned_cols=35  Identities=26%  Similarity=0.207  Sum_probs=31.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      ++.+|+|+|+|.+|..+|..+..+|.+|+++++.+
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  217 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRP  217 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSG
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            46799999999999999999999999999988765

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=87.62  E-value=0.57  Score=43.06  Aligned_cols=35  Identities=26%  Similarity=0.434  Sum_probs=31.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  167 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  167 (414)
                      -++|.|||+|..|.-+|..|++.|.+|+++++.+.
T Consensus        15 ~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~   49 (302)
T 1f0y_A           15 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED   49 (302)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            46899999999999999999999999999987653

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=87.61  E-value=0.97  Score=45.16  Aligned_cols=47  Identities=21%  Similarity=0.473  Sum_probs=37.4

Q ss_pred             hHHHHcCCeEEcCCcEEEEeCCC--C--EEEeCCCcEEecCeEEEccCCCCC
Q 014997           54 EWYKEKGIEMIYQDPVTSIDIEK--Q--TLITNSGKLLKYGSLIVATGCTAS  101 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~~id~~~--~--~V~~~~g~~~~yd~LviAtG~~~~  101 (414)
                      +.+++.|++++.+ +|++++.+.  .  .|.+.+|+++.+|.||.|+|.+..
T Consensus       173 ~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~  223 (538)
T 2aqj_A          173 RWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGL  223 (538)
T ss_dssp             HHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCC
T ss_pred             HHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchh
Confidence            3445679999998 899997642  2  577888888999999999998654

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=87.46  E-value=0.61  Score=42.47  Aligned_cols=33  Identities=24%  Similarity=0.432  Sum_probs=30.0

Q ss_pred             eEEEECC-ChHHHHHHHHHHhCCCcEEEEeeCCc
Q 014997          135 KVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPENH  167 (414)
Q Consensus       135 ~vvVvGg-G~~g~e~A~~l~~~g~~Vtlv~~~~~  167 (414)
                      +|+|.|| |++|..++..|.+.|.+|+.+.|.+.
T Consensus         2 kILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~   35 (298)
T 4b4o_A            2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPG   35 (298)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            5899997 99999999999999999999988753

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=87.44  E-value=0.87  Score=44.45  Aligned_cols=55  Identities=29%  Similarity=0.459  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCc
Q 014997          176 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  232 (414)
Q Consensus       176 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~  232 (414)
                      .+.+.+.+.+++.|++|++++.|++|...+++. ..|.+ ++.++.||.||++++..
T Consensus       235 ~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~-~~v~~-~~~~~~ad~vv~a~p~~  289 (477)
T 3nks_A          235 MLPQALETHLTSRGVSVLRGQPVCGLSLQAEGR-WKVSL-RDSSLEADHVISAIPAS  289 (477)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCCCEEEECGGGC-EEEEC-SSCEEEESEEEECSCHH
T ss_pred             HHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCce-EEEEE-CCeEEEcCEEEECCCHH
Confidence            466777888889999999999999998654442 35555 45579999999998763

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=87.39  E-value=0.5  Score=42.23  Aligned_cols=35  Identities=20%  Similarity=0.285  Sum_probs=30.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCC-cEEEEeeCC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPEN  166 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~~  166 (414)
                      ..++|+|||.|-+|.++|..|++.|. +++++++..
T Consensus        30 ~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           30 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             hCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            35799999999999999999999996 789888763

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=87.38  E-value=0.65  Score=44.32  Aligned_cols=42  Identities=10%  Similarity=0.030  Sum_probs=35.8

Q ss_pred             cCCeEEcCCcEEEEeCCC--CEEEeCCCcEEecCeEEEccCCCC
Q 014997           59 KGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTA  100 (414)
Q Consensus        59 ~~i~~~~~~~V~~id~~~--~~V~~~~g~~~~yd~LviAtG~~~  100 (414)
                      .+++++.+++|++++.+.  -+|++.+|+++.+|.||.|+|.+.
T Consensus       110 ~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S  153 (397)
T 2vou_A          110 GPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGAS  153 (397)
T ss_dssp             CSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTC
T ss_pred             CCcEEEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECCCcch
Confidence            389999999999997654  367788998999999999999864

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=87.16  E-value=0.44  Score=47.45  Aligned_cols=33  Identities=27%  Similarity=0.287  Sum_probs=29.7

Q ss_pred             CeEEEECCChHHHHHHHHHHh-CCCcEEEEeeCC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVG-WKLDTTIIFPEN  166 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~-~g~~Vtlv~~~~  166 (414)
                      -.++|||+|..|+-+|..|++ .+.+|.|+|+++
T Consensus        18 yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~   51 (526)
T 3t37_A           18 CDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGE   51 (526)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSB
T ss_pred             eeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCC
Confidence            479999999999999999997 578999999885

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=87.16  E-value=0.56  Score=45.54  Aligned_cols=47  Identities=19%  Similarity=0.330  Sum_probs=37.1

Q ss_pred             HhHHHHcCCeEEcCCcEEEEeC---------------CCC---EEEeCCCcEE--ecCeEEEccCCCC
Q 014997           53 PEWYKEKGIEMIYQDPVTSIDI---------------EKQ---TLITNSGKLL--KYGSLIVATGCTA  100 (414)
Q Consensus        53 ~~~~~~~~i~~~~~~~V~~id~---------------~~~---~V~~~~g~~~--~yd~LviAtG~~~  100 (414)
                      .+.+++.|++++.+++|+++..               ++.   .|.+.+| ++  .+|.||+|||...
T Consensus       188 ~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~~s  254 (448)
T 3axb_A          188 YRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGVWS  254 (448)
T ss_dssp             HHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGGGH
T ss_pred             HHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCcCH
Confidence            3455678999999999999976               333   4677777 58  9999999999753

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=86.90  E-value=0.32  Score=48.02  Aligned_cols=43  Identities=14%  Similarity=0.263  Sum_probs=38.0

Q ss_pred             HHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCC
Q 014997           56 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGC   98 (414)
Q Consensus        56 ~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~   98 (414)
                      +.+.|++++++++|++|+.+++.+++.+|+++.||+||.++-.
T Consensus       232 l~~~g~~i~~~~~V~~I~~~~~~v~~~~G~~~~ad~vI~t~P~  274 (513)
T 4gde_A          232 LPKEKTRFGEKGKVTKVNANNKTVTLQDGTTIGYKKLVSTMAV  274 (513)
T ss_dssp             SCGGGEEESGGGCEEEEETTTTEEEETTSCEEEEEEEEECSCH
T ss_pred             HHhcCeeeecceEEEEEEccCCEEEEcCCCEEECCEEEECCCH
Confidence            3456899999999999999999999999999999999987653

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=86.90  E-value=0.72  Score=46.31  Aligned_cols=46  Identities=15%  Similarity=0.347  Sum_probs=36.8

Q ss_pred             HHHHc-CCeEEcCCcEEEEeCC--C--CEEEeCCCcEEecCeEEEccCCCCC
Q 014997           55 WYKEK-GIEMIYQDPVTSIDIE--K--QTLITNSGKLLKYGSLIVATGCTAS  101 (414)
Q Consensus        55 ~~~~~-~i~~~~~~~V~~id~~--~--~~V~~~~g~~~~yd~LviAtG~~~~  101 (414)
                      .+++. |++++.+ +|++++.+  .  ..|.+.+|+++.+|.||.|+|....
T Consensus       203 ~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S~  253 (550)
T 2e4g_A          203 FATEKLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGL  253 (550)
T ss_dssp             HHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGCC
T ss_pred             HHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCchh
Confidence            34556 9999998 99999753  2  2577888888999999999998654

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=86.67  E-value=0.72  Score=41.74  Aligned_cols=33  Identities=18%  Similarity=0.135  Sum_probs=30.4

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  167 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  167 (414)
                      +|.|||+|.+|.-+|..|.+.|.+|+++.|.+.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~   34 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCcc
Confidence            689999999999999999999999999988764

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=86.63  E-value=0.7  Score=45.07  Aligned_cols=46  Identities=15%  Similarity=0.161  Sum_probs=35.9

Q ss_pred             HHHcCCeEEcCCcEEEEeCCCCE---EEeC---CCc--EEecCeEEEccCCCCC
Q 014997           56 YKEKGIEMIYQDPVTSIDIEKQT---LITN---SGK--LLKYGSLIVATGCTAS  101 (414)
Q Consensus        56 ~~~~~i~~~~~~~V~~id~~~~~---V~~~---~g~--~~~yd~LviAtG~~~~  101 (414)
                      +.+.|++++.+++|++++.++..   |++.   +|+  ++.+|.||.|+|....
T Consensus       110 a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s~  163 (453)
T 3atr_A          110 AQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSRS  163 (453)
T ss_dssp             HHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSEEEECCGGGCT
T ss_pred             HHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCEEEECcCCchh
Confidence            45579999999999999876544   4443   665  7999999999998653

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=86.62  E-value=0.71  Score=44.43  Aligned_cols=35  Identities=23%  Similarity=0.252  Sum_probs=31.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      .+++|+|+|+|.+|..++..++.+|.+|+++++.+
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~  205 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRP  205 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            36899999999999999999999999998887754

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=86.55  E-value=0.82  Score=41.84  Aligned_cols=34  Identities=26%  Similarity=0.306  Sum_probs=31.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      .++++.|||.|.+|..+|..|...|.+|+++.+.
T Consensus       154 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~  187 (293)
T 3d4o_A          154 HGANVAVLGLGRVGMSVARKFAALGAKVKVGARE  187 (293)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECC
Confidence            5789999999999999999999999999888765

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=86.44  E-value=0.73  Score=45.73  Aligned_cols=34  Identities=21%  Similarity=0.115  Sum_probs=30.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  167 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  167 (414)
                      -.++|||+|..|+-+|..|++.|.+|.+++++..
T Consensus         6 ~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~   39 (504)
T 1n4w_A            6 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQL   39 (504)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence            3689999999999999999999999999998763

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=86.42  E-value=0.72  Score=41.88  Aligned_cols=47  Identities=6%  Similarity=0.181  Sum_probs=34.5

Q ss_pred             HHHH-cCCeEEcCCcEEEEeCCCCE---EEeC---------CC-----cEEecCeEEEccCCCCC
Q 014997           55 WYKE-KGIEMIYQDPVTSIDIEKQT---LITN---------SG-----KLLKYGSLIVATGCTAS  101 (414)
Q Consensus        55 ~~~~-~~i~~~~~~~V~~id~~~~~---V~~~---------~g-----~~~~yd~LviAtG~~~~  101 (414)
                      .+.+ .|++++.+++|++++.+...   |.+.         +|     .++.+|.||+|||..+.
T Consensus       128 ~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~  192 (284)
T 1rp0_A          128 KLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGP  192 (284)
T ss_dssp             HHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSST
T ss_pred             HHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchH
Confidence            3444 69999999999999866543   2332         22     57999999999998653

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=86.40  E-value=0.82  Score=41.97  Aligned_cols=34  Identities=21%  Similarity=0.269  Sum_probs=31.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      .++++.|||.|.+|..+|..|...|.+|+++.+.
T Consensus       156 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~  189 (300)
T 2rir_A          156 HGSQVAVLGLGRTGMTIARTFAALGANVKVGARS  189 (300)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECC
Confidence            5789999999999999999999999999988765

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=86.33  E-value=1.4  Score=39.76  Aligned_cols=34  Identities=12%  Similarity=0.200  Sum_probs=31.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      +++++|+|+|-.|.-++..|.+.|.+|+++.|..
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~  151 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSS  151 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            7899999999999999999999999999998865

>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}

Probab=86.31  E-value=0.79  Score=45.34  Aligned_cols=75  Identities=16%  Similarity=0.150  Sum_probs=53.7

Q ss_pred             CCCeEEEECCChHHHH-HHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEE
Q 014997          132 KAKKVVVVGGGYIGME-VAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  210 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e-~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~  210 (414)
                      ..++|.|||-|-+|+- +|..|.++|.+|+..+....       +.     .+.|++.|++++.+...     .      
T Consensus        18 ~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~-------~~-----~~~l~~~gi~~~~g~~~-----~------   74 (491)
T 2f00_A           18 RVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPN-------PV-----TQQLMNLGATIYFNHRP-----E------   74 (491)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCC-------HH-----HHHHHHTTCEEESSCCG-----G------
T ss_pred             cCCEEEEEEcCHHHHHHHHHHHHhCCCeEEEECCCCC-------HH-----HHHHHHCCCEEECCCCH-----H------
Confidence            3578999999999997 99999999999998876441       11     13567889999866421     0      


Q ss_pred             EEEeCCCcEEecCEEEEccCCcCCCh
Q 014997          211 AVKLEDGSTIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       211 ~v~~~~g~~i~~D~vi~a~G~~p~~~  236 (414)
                        .+ +    .+|.||+..|..+..+
T Consensus        75 --~~-~----~a~~vv~s~~i~~~~p   93 (491)
T 2f00_A           75 --NV-R----DASVVVVSSAISADNP   93 (491)
T ss_dssp             --GG-T----TCSEEEECTTCCTTCH
T ss_pred             --Hc-C----CCCEEEECCCCCCCCH
Confidence              01 1    3688999888765433

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=86.31  E-value=1.2  Score=41.31  Aligned_cols=36  Identities=19%  Similarity=0.348  Sum_probs=32.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  167 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  167 (414)
                      .++++.|||-|.+|..+|..|...|.+|+.+.+.+.
T Consensus       138 ~g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~  173 (315)
T 3pp8_A          138 EEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRK  173 (315)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCch
Confidence            368999999999999999999999999999987654

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=86.28  E-value=0.44  Score=47.80  Aligned_cols=33  Identities=27%  Similarity=0.349  Sum_probs=30.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  167 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  167 (414)
                      -.++|||+|..|+-+|..|++ |.+|.|+++++.
T Consensus        27 yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~   59 (536)
T 1ju2_A           27 YDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSL   59 (536)
T ss_dssp             EEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBC
T ss_pred             ccEEEECccHHHHHHHHHHhc-CCcEEEEecCCC
Confidence            369999999999999999999 999999998743

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=86.25  E-value=0.85  Score=41.24  Aligned_cols=34  Identities=15%  Similarity=0.190  Sum_probs=31.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      .+++++|+|+|-+|..+|..|.+.|.+|+++.|.
T Consensus       118 ~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~  151 (271)
T 1nyt_A          118 PGLRILLIGAGGASRGVLLPLLSLDCAVTITNRT  151 (271)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECC
Confidence            5789999999999999999999999999988765

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=86.21  E-value=0.53  Score=41.18  Aligned_cols=37  Identities=27%  Similarity=0.311  Sum_probs=28.3

Q ss_pred             CCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997          255 QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       255 ~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                      .++++.++||++||++..+           .+..|+..|+.||+.|+.
T Consensus       289 ~~~~~~~~v~l~GDa~~g~-----------gv~~A~~sG~~aA~~I~~  325 (336)
T 3kkj_A          289 ALSDADLGIYVCGDWCLSG-----------RVEGAWLSGQEAARRLLE  325 (336)
T ss_dssp             SEEETTTTEEECCGGGTTS-----------SHHHHHHHHHHHHHHHHH
T ss_pred             ceeeCCCCEEEEecccCCc-----------CHHHHHHHHHHHHHHHHH
Confidence            4456789999999986532           356688899999988875

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=86.17  E-value=0.9  Score=44.04  Aligned_cols=36  Identities=22%  Similarity=0.194  Sum_probs=32.2

Q ss_pred             cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          131 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       131 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      -.+++++|+|.|.+|..+|..++.+|.+|++.++.+
T Consensus       245 L~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp  280 (464)
T 3n58_A          245 MAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDP  280 (464)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             ccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            368999999999999999999999999999887643

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=86.14  E-value=0.83  Score=43.64  Aligned_cols=35  Identities=20%  Similarity=0.171  Sum_probs=31.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      .+++|+|+|+|.+|..++..++.+|.+|+++++.+
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~  205 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA  205 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999999999999999999999988887764

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=86.09  E-value=0.91  Score=43.84  Aligned_cols=35  Identities=26%  Similarity=0.184  Sum_probs=31.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      .+++++|+|.|.+|..+|..|+.+|.+|+++++.+
T Consensus       219 ~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp  253 (435)
T 3gvp_A          219 GGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDP  253 (435)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            68999999999999999999999999998887643

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=86.02  E-value=1.3  Score=43.89  Aligned_cols=47  Identities=13%  Similarity=0.188  Sum_probs=37.3

Q ss_pred             hHHHHcCCeEEcCCcEEEEeCC--C--CEEEeCCCcEEecCeEEEccCCCCC
Q 014997           54 EWYKEKGIEMIYQDPVTSIDIE--K--QTLITNSGKLLKYGSLIVATGCTAS  101 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~~id~~--~--~~V~~~~g~~~~yd~LviAtG~~~~  101 (414)
                      +.+.+.|++++.+ +|++++.+  .  ..|++++|+++.+|.||.|+|.+..
T Consensus       181 ~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~  231 (511)
T 2weu_A          181 EYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGL  231 (511)
T ss_dssp             HHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCC
T ss_pred             HHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchH
Confidence            3445679999998 99999763  2  2577888888999999999998643

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=85.99  E-value=0.87  Score=43.21  Aligned_cols=35  Identities=31%  Similarity=0.515  Sum_probs=31.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      .+++|+|+|+|.+|..+|..++..|.+|+++.+.+
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~  199 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMGAQVTILDVNH  199 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            46899999999999999999999999999887653

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=85.81  E-value=0.95  Score=45.63  Aligned_cols=48  Identities=17%  Similarity=0.169  Sum_probs=36.4

Q ss_pred             HhHHHHcCCeEEcCCcEEEEeCCC-CE---EEeC--CCc--EEecCeEEEccCCCC
Q 014997           53 PEWYKEKGIEMIYQDPVTSIDIEK-QT---LITN--SGK--LLKYGSLIVATGCTA  100 (414)
Q Consensus        53 ~~~~~~~~i~~~~~~~V~~id~~~-~~---V~~~--~g~--~~~yd~LviAtG~~~  100 (414)
                      .+.+++.||+++++++|+++..+. ..   |.+.  +|+  ++.+|.||+|||...
T Consensus       262 ~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~  317 (571)
T 1y0p_A          262 YDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFA  317 (571)
T ss_dssp             HHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred             HHHHHhcCCEEEeCCEeeEeEEcCCCeEEEEEEEeCCCcEEEEECCeEEEeCCCcc
Confidence            455667899999999999997654 31   3333  675  689999999999864

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=85.79  E-value=0.64  Score=41.92  Aligned_cols=33  Identities=12%  Similarity=0.051  Sum_probs=30.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      ++|+|.|+|++|..++..|.+.|.+|+.+.|.+
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   38 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP   38 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence            689999999999999999999999999998764

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=85.61  E-value=2.4  Score=41.61  Aligned_cols=37  Identities=22%  Similarity=0.253  Sum_probs=33.6

Q ss_pred             cCCCeEEEECCChHHHHHHHHHHhC-CC-cEEEEeeCCc
Q 014997          131 EKAKKVVVVGGGYIGMEVAAAAVGW-KL-DTTIIFPENH  167 (414)
Q Consensus       131 ~~~~~vvVvGgG~~g~e~A~~l~~~-g~-~Vtlv~~~~~  167 (414)
                      .+-.+|.|||.|..|.-+|..|++. |. +|+++.+.+.
T Consensus        16 ~~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           16 GPIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             CSCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            3557899999999999999999999 99 9999998775

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=85.61  E-value=0.86  Score=45.23  Aligned_cols=54  Identities=13%  Similarity=0.124  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCc
Q 014997          177 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  232 (414)
Q Consensus       177 ~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~  232 (414)
                      +...+....++.|+++++++.|++|..++ +.+ .|.+.+|+++.||.||++++..
T Consensus       214 ~~~l~~~l~~~lg~~i~~~~~V~~i~~~~-~~v-~v~~~~g~~~~ad~VI~a~p~~  267 (520)
T 1s3e_A          214 SGQVSERIMDLLGDRVKLERPVIYIDQTR-ENV-LVETLNHEMYEAKYVISAIPPT  267 (520)
T ss_dssp             THHHHHHHHHHHGGGEESSCCEEEEECSS-SSE-EEEETTSCEEEESEEEECSCGG
T ss_pred             HHHHHHHHHHHcCCcEEcCCeeEEEEECC-CeE-EEEECCCeEEEeCEEEECCCHH
Confidence            33444444455588999999999998653 344 4788899899999999999864

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=85.58  E-value=0.94  Score=43.15  Aligned_cols=35  Identities=29%  Similarity=0.356  Sum_probs=31.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      .+++|+|+|+|.+|..+|..++.+|.+|+++.+.+
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~  201 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDINI  201 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            46899999999999999999999999998887653

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=85.57  E-value=0.94  Score=43.20  Aligned_cols=35  Identities=26%  Similarity=0.407  Sum_probs=32.1

Q ss_pred             cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          131 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       131 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      ..+++|+|+|+|.+|..++..+.++|.+|.++...
T Consensus        12 ~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~   46 (389)
T 3q2o_A           12 LPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPT   46 (389)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            46789999999999999999999999999998865

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=85.51  E-value=0.9  Score=38.43  Aligned_cols=34  Identities=26%  Similarity=0.474  Sum_probs=30.8

Q ss_pred             CeEEEECC-ChHHHHHHHHHHhCCCcEEEEeeCCc
Q 014997          134 KKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPENH  167 (414)
Q Consensus       134 ~~vvVvGg-G~~g~e~A~~l~~~g~~Vtlv~~~~~  167 (414)
                      ++++|.|+ |.+|..++..|.+.|.+|+++.|.+.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~   38 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS   38 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChh
Confidence            68999997 99999999999999999999988653

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=85.49  E-value=2.4  Score=39.38  Aligned_cols=56  Identities=27%  Similarity=0.401  Sum_probs=40.5

Q ss_pred             CCeEEEECC-ChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEc
Q 014997          133 AKKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVK  194 (414)
Q Consensus       133 ~~~vvVvGg-G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~  194 (414)
                      .++|+|.|+ |.+|..++..|.+.|.+|+++.|.+..     .+.-...+ +.+...+++++.
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~-----~~~~~~~~-~~l~~~~v~~~~   66 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPR-----SPSKAKIF-KALEDKGAIIVY   66 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCC-----CHHHHHHH-HHHHHTTCEEEE
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCC-----ChhHHHHH-HHHHhCCcEEEE
Confidence            468999998 999999999999999999999887522     22222222 345667777764

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=85.30  E-value=1.7  Score=42.30  Aligned_cols=60  Identities=15%  Similarity=0.249  Sum_probs=44.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc-------ccccCHHHHHHHHHHHHhCCcEEE
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------QRLFTPSLAQRYEQLYQQNGVKFV  193 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------~~~~~~~~~~~~~~~l~~~gv~i~  193 (414)
                      .+|.|||.|++|+-+|..|++.|.+|+-++..+...       .....+.+.+.+.+.++...+++-
T Consensus        22 ~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~t   88 (444)
T 3vtf_A           22 ASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFA   88 (444)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEC
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEE
Confidence            589999999999999999999999999987654221       112445666677776666655543

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=85.27  E-value=1  Score=39.90  Aligned_cols=35  Identities=26%  Similarity=0.343  Sum_probs=31.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      ..++|.|||.|..|.-+|..|++.|.+|+++.|.+
T Consensus        18 ~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~   52 (245)
T 3dtt_A           18 QGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDP   52 (245)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            46899999999999999999999999999988764

>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*

Probab=85.18  E-value=0.78  Score=45.15  Aligned_cols=75  Identities=17%  Similarity=0.203  Sum_probs=53.5

Q ss_pred             CCCeEEEECCChHHHH-HHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEE
Q 014997          132 KAKKVVVVGGGYIGME-VAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  210 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e-~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~  210 (414)
                      ..+++.|||-|-+|+- +|..|.++|.+|+..+....       +.     .+.|++.|+++..+....           
T Consensus        17 ~~~~i~viG~G~sG~s~~A~~l~~~G~~V~~~D~~~~-------~~-----~~~l~~~gi~~~~g~~~~-----------   73 (475)
T 1p3d_A           17 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADG-------VV-----TQRLAQAGAKIYIGHAEE-----------   73 (475)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCS-------HH-----HHHHHHTTCEEEESCCGG-----------
T ss_pred             cCCEEEEEeecHHHHHHHHHHHHhCCCEEEEECCCCC-------HH-----HHHHHhCCCEEECCCCHH-----------
Confidence            3578999999999997 99999999999999876541       11     235678899887654210           


Q ss_pred             EEEeCCCcEEecCEEEEccCCcCCCh
Q 014997          211 AVKLEDGSTIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       211 ~v~~~~g~~i~~D~vi~a~G~~p~~~  236 (414)
                        .+ +    .+|.||+..|..++.+
T Consensus        74 --~~-~----~a~~vv~s~~i~~~~~   92 (475)
T 1p3d_A           74 --HI-E----GASVVVVSSAIKDDNP   92 (475)
T ss_dssp             --GG-T----TCSEEEECTTSCTTCH
T ss_pred             --Hc-C----CCCEEEECCCCCCCCH
Confidence              01 1    3688999988765443

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=85.15  E-value=1.1  Score=44.38  Aligned_cols=48  Identities=15%  Similarity=0.217  Sum_probs=36.8

Q ss_pred             hHHHHcCCeEEcCCcEEEEeCCCCE---EE--eCCCc--EEecCeEEEccCCCCC
Q 014997           54 EWYKEKGIEMIYQDPVTSIDIEKQT---LI--TNSGK--LLKYGSLIVATGCTAS  101 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~~id~~~~~---V~--~~~g~--~~~yd~LviAtG~~~~  101 (414)
                      +.+++.|++++.+++|+++..++..   |.  ..+|+  ++.+|.||.|+|.+..
T Consensus       119 ~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~ad~VI~AdG~~S~  173 (512)
T 3e1t_A          119 RNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARFIVDASGNRTR  173 (512)
T ss_dssp             HHHHHTTCEEESSCEEEEEEEETTEEEEEEEECSSSCEEEEEEEEEEECCCTTCS
T ss_pred             HHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEcCEEEECCCcchH
Confidence            3445679999999999999876642   33  44574  7999999999998653

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=85.05  E-value=0.9  Score=45.12  Aligned_cols=34  Identities=24%  Similarity=0.252  Sum_probs=31.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  167 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  167 (414)
                      -.++|||+|..|+-+|..|++.|.+|.+++++..
T Consensus        12 ~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~   45 (507)
T 1coy_A           12 VPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS   45 (507)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCC
Confidence            4689999999999999999999999999998753

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=84.90  E-value=0.98  Score=44.36  Aligned_cols=34  Identities=26%  Similarity=0.176  Sum_probs=31.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      .+++++|+|+|.+|..+|..|+..|.+|.++++.
T Consensus       264 ~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~  297 (488)
T 3ond_A          264 AGKVAVVAGYGDVGKGCAAALKQAGARVIVTEID  297 (488)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            6899999999999999999999999999887654

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=84.85  E-value=1.9  Score=41.98  Aligned_cols=62  Identities=13%  Similarity=0.344  Sum_probs=43.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc-------ccCHHHHHHHHHHHHhCCcEEE
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------LFTPSLAQRYEQLYQQNGVKFV  193 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-------~~~~~~~~~~~~~l~~~gv~i~  193 (414)
                      ..-++.|||.|..|+-+|..|++.|.+|+++.+.+.....       .+.+.+.+.+.+.....++++-
T Consensus         7 ~~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~t   75 (446)
T 4a7p_A            7 GSVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFT   75 (446)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEE
T ss_pred             CceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEE
Confidence            3468999999999999999999999999999987643221       1233444444444444445554

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=84.71  E-value=0.96  Score=41.47  Aligned_cols=34  Identities=26%  Similarity=0.342  Sum_probs=30.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      ..++|.|||.|.+|.-+|..|+ .|.+|+++++.+
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~   44 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSE   44 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCH
Confidence            4689999999999999999999 999999998765

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=84.64  E-value=1.1  Score=43.43  Aligned_cols=36  Identities=22%  Similarity=0.327  Sum_probs=32.4

Q ss_pred             hcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          130 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       130 ~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      +.++++|+|+|+|.+|..++..+.++|.+|.++++.
T Consensus        32 ~~~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~   67 (419)
T 4e4t_A           32 ILPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPD   67 (419)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            347899999999999999999999999999988754

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=84.54  E-value=1.1  Score=38.40  Aligned_cols=32  Identities=22%  Similarity=0.340  Sum_probs=29.1

Q ss_pred             eEEEECC-ChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          135 KVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       135 ~vvVvGg-G~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      +|+|.|+ |.+|..++..|.+.|.+|+++.|.+
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA   34 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence            6899995 9999999999999999999998864

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=84.43  E-value=1.4  Score=43.79  Aligned_cols=46  Identities=22%  Similarity=0.224  Sum_probs=36.2

Q ss_pred             HHHH-cCCeEEcCCcEEEEeCCC--C--EEEeCCCcEEecCeEEEccCCCCC
Q 014997           55 WYKE-KGIEMIYQDPVTSIDIEK--Q--TLITNSGKLLKYGSLIVATGCTAS  101 (414)
Q Consensus        55 ~~~~-~~i~~~~~~~V~~id~~~--~--~V~~~~g~~~~yd~LviAtG~~~~  101 (414)
                      .+++ .|++++.+ +|++++.+.  .  .|++++|.++.+|+||.|+|.+..
T Consensus       184 ~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~  234 (526)
T 2pyx_A          184 HCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSL  234 (526)
T ss_dssp             HHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCC
T ss_pred             HHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchH
Confidence            3455 79999998 699997642  3  567778778999999999998654

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=84.38  E-value=1.1  Score=40.78  Aligned_cols=34  Identities=24%  Similarity=0.194  Sum_probs=30.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  167 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  167 (414)
                      .+|.|||.|.+|..+|..|++.|.+|+++.+.+.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPE   35 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            5799999999999999999999999999887653

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=84.36  E-value=0.9  Score=45.32  Aligned_cols=46  Identities=17%  Similarity=0.143  Sum_probs=36.6

Q ss_pred             HHHHcCCeEEcCCcEEEEeCCCC------EEEeCCC---cEEecCeEEEccCCCC
Q 014997           55 WYKEKGIEMIYQDPVTSIDIEKQ------TLITNSG---KLLKYGSLIVATGCTA  100 (414)
Q Consensus        55 ~~~~~~i~~~~~~~V~~id~~~~------~V~~~~g---~~~~yd~LviAtG~~~  100 (414)
                      .+++.|++++.+++|+++..+..      ++++.++   .++.+|+||.|+|.+.
T Consensus       129 ~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~~~~~~~~~~i~a~~vV~AdG~~S  183 (535)
T 3ihg_A          129 QARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAGPDGEYDLRAGYLVGADGNRS  183 (535)
T ss_dssp             HHHHTTCEEESSCEEEEEEEECGGGCSEEEEEEEETTEEEEEEEEEEEECCCTTC
T ss_pred             HHHhCCCEEEeCCEEEEEEECCCCccccEEEEEEcCCCeEEEEeCEEEECCCCcc
Confidence            34567999999999999976554      4555565   6799999999999864

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=84.25  E-value=1.1  Score=40.67  Aligned_cols=34  Identities=21%  Similarity=0.145  Sum_probs=30.3

Q ss_pred             CCCeEEEECCC-hHHHHHHHHHHhCCCcEEEEeeC
Q 014997          132 KAKKVVVVGGG-YIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       132 ~~~~vvVvGgG-~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      .+++++|||.| ..|.-+|..|.+.|..||++++.
T Consensus       160 ~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~  194 (286)
T 4a5o_A          160 YGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRF  194 (286)
T ss_dssp             TTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC
Confidence            68999999965 58999999999999999999764

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=84.15  E-value=1.1  Score=41.72  Aligned_cols=35  Identities=20%  Similarity=0.138  Sum_probs=29.8

Q ss_pred             CCCeEEEECC-ChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          132 KAKKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       132 ~~~~vvVvGg-G~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      ++++|+|.|+ |++|..++..|.+.|.+|+.+.|.+
T Consensus        18 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~   53 (347)
T 4id9_A           18 GSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRP   53 (347)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCC
Confidence            5688999997 9999999999999999999998765

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=84.15  E-value=1.1  Score=42.66  Aligned_cols=42  Identities=17%  Similarity=0.192  Sum_probs=35.0

Q ss_pred             CCeEEcCCcEEEEeCCCC--EEEeCCCcEEecCeEEEccCCCCC
Q 014997           60 GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  101 (414)
Q Consensus        60 ~i~~~~~~~V~~id~~~~--~V~~~~g~~~~yd~LviAtG~~~~  101 (414)
                      +++++++++|++++.+..  +|++.+|+++.+|.||.|+|.+..
T Consensus       140 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  183 (398)
T 2xdo_A          140 NDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSK  183 (398)
T ss_dssp             TTSEEESCCEEEEEECSSSEEEEETTSCCEEESEEEECSCTTCS
T ss_pred             CCEEEECCEEEEEEECCCEEEEEECCCcEEecCEEEECCCcchh
Confidence            467899999999986543  678889988999999999998653

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=84.14  E-value=1  Score=41.24  Aligned_cols=32  Identities=22%  Similarity=0.224  Sum_probs=29.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      .+|.|||+|.+|.-+|..|.+.|.+|+++.|.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~   35 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQW   35 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECC
Confidence            47999999999999999999999999998764

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=84.06  E-value=1.2  Score=38.53  Aligned_cols=33  Identities=24%  Similarity=0.281  Sum_probs=29.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      ..++.|||.|.+|..+|..|.+.|.+|+++.|.
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~   60 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSGFKVVVGSRN   60 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            468999999999999999999999999988764

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=84.05  E-value=0.78  Score=41.96  Aligned_cols=33  Identities=24%  Similarity=0.246  Sum_probs=30.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      .+|.|||+|.+|.-+|..|.+.|.+|+++.|..
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            479999999999999999999999999999875

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=83.99  E-value=1.2  Score=40.60  Aligned_cols=35  Identities=17%  Similarity=0.141  Sum_probs=31.1

Q ss_pred             CCCeEEEECCCh-HHHHHHHHHHhCCCcEEEEeeCC
Q 014997          132 KAKKVVVVGGGY-IGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       132 ~~~~vvVvGgG~-~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      .+++++|||.|. .|.-+|..|.+.|..||++++..
T Consensus       158 ~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t  193 (288)
T 1b0a_A          158 FGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT  193 (288)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            689999999996 69999999999999999997543

>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}

Probab=83.99  E-value=1.6  Score=38.46  Aligned_cols=37  Identities=22%  Similarity=0.381  Sum_probs=31.2

Q ss_pred             CCCeEEEECC-----------------ChHHHHHHHHHHhCCCcEEEEeeCCcc
Q 014997          132 KAKKVVVVGG-----------------GYIGMEVAAAAVGWKLDTTIIFPENHL  168 (414)
Q Consensus       132 ~~~~vvVvGg-----------------G~~g~e~A~~l~~~g~~Vtlv~~~~~~  168 (414)
                      .+++|+|-||                 |.+|..+|..++++|.+|+++.+...+
T Consensus         2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~~~   55 (232)
T 2gk4_A            2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRAL   55 (232)
T ss_dssp             -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTTSC
T ss_pred             CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            4788888877                 589999999999999999999986543

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=83.94  E-value=1  Score=42.10  Aligned_cols=77  Identities=16%  Similarity=0.248  Sum_probs=49.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEE
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK  213 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~  213 (414)
                      .+|.|||+|.+|.-+|..|++.|.+|+++.|.+         .     .+.+++.|+.+..... . ....    + .+ 
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~~---------~-----~~~~~~~g~~~~~~~~-~-~~~~----~-~~-   61 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALAGEAINVLARGA---------T-----LQALQTAGLRLTEDGA-T-HTLP----V-RA-   61 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHTTCCEEEECCHH---------H-----HHHHHHTCEEEEETTE-E-EEEC----C-EE-
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEEChH---------H-----HHHHHHCCCEEecCCC-e-EEEe----e-eE-
Confidence            579999999999999999999999999987631         1     1235667877653211 1 1100    0 11 


Q ss_pred             eCCC-cEEecCEEEEccCCc
Q 014997          214 LEDG-STIDADTIVIGIGAK  232 (414)
Q Consensus       214 ~~~g-~~i~~D~vi~a~G~~  232 (414)
                      ..+- ..-++|.||+|+...
T Consensus        62 ~~~~~~~~~~D~Vilavk~~   81 (335)
T 3ghy_A           62 THDAAALGEQDVVIVAVKAP   81 (335)
T ss_dssp             ESCHHHHCCCSEEEECCCHH
T ss_pred             ECCHHHcCCCCEEEEeCCch
Confidence            1111 112589999998764

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=83.93  E-value=0.51  Score=47.89  Aligned_cols=49  Identities=10%  Similarity=0.072  Sum_probs=36.1

Q ss_pred             CHhHHHHcCCeEEcCCcEEEEeCC-C-CE--EEe---CCCc--EEecCeEEEccCCCC
Q 014997           52 TPEWYKEKGIEMIYQDPVTSIDIE-K-QT--LIT---NSGK--LLKYGSLIVATGCTA  100 (414)
Q Consensus        52 ~~~~~~~~~i~~~~~~~V~~id~~-~-~~--V~~---~~g~--~~~yd~LviAtG~~~  100 (414)
                      ..+.+++.||+++.+++|+++..+ + +.  |.+   .+|+  .+.++.||+|||...
T Consensus       149 L~~~~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~~  206 (588)
T 2wdq_A          149 LYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAG  206 (588)
T ss_dssp             HHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred             HHHHHHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCCc
Confidence            345566789999999999998754 3 32  332   4665  589999999999854

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=83.87  E-value=1.4  Score=43.56  Aligned_cols=47  Identities=17%  Similarity=0.278  Sum_probs=37.1

Q ss_pred             hHHHHcCCeEEcCCcEEEEeCCCC--EEEeCCCc---EEecCeEEEccCCCC
Q 014997           54 EWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGK---LLKYGSLIVATGCTA  100 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~~id~~~~--~V~~~~g~---~~~yd~LviAtG~~~  100 (414)
                      +.+.+.|++++.+++|++++.+..  +|++.++.   ++.+|+||.|.|.+.
T Consensus       115 ~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S  166 (499)
T 2qa2_A          115 EWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGRS  166 (499)
T ss_dssp             HHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCTTC
T ss_pred             HHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCccc
Confidence            334567999999999999976543  56666664   799999999999864

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=83.84  E-value=1.3  Score=40.52  Aligned_cols=36  Identities=25%  Similarity=0.409  Sum_probs=31.8

Q ss_pred             CCCeEEEECC-ChHHHHHHHHHHhCCCcEEEEeeCCc
Q 014997          132 KAKKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPENH  167 (414)
Q Consensus       132 ~~~~vvVvGg-G~~g~e~A~~l~~~g~~Vtlv~~~~~  167 (414)
                      ..++|+|.|+ |++|..++..|.+.|.+|+.+.|.+.
T Consensus         6 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   42 (321)
T 3vps_A            6 LKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRV   42 (321)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred             CCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence            3578999998 99999999999999999999988654

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=83.81  E-value=1.3  Score=42.13  Aligned_cols=35  Identities=20%  Similarity=0.387  Sum_probs=32.0

Q ss_pred             cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          131 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       131 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      ..+++|.|+|+|..|..++..+.++|.+|.++.+.
T Consensus        10 ~~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~   44 (377)
T 3orq_A           10 KFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPS   44 (377)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            35789999999999999999999999999998865

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=83.73  E-value=1.2  Score=40.71  Aligned_cols=47  Identities=17%  Similarity=0.137  Sum_probs=35.8

Q ss_pred             CHHHHHHHHHhh---cCCCeEEEECCCh-HHHHHHHHHHhCCCcEEEEeeC
Q 014997          119 DVADADALISSL---EKAKKVVVVGGGY-IGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       119 ~~~~~~~~~~~~---~~~~~vvVvGgG~-~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      |...+..+.+..   -.+++++|||.|. +|.-+|..|.+.|..||++++.
T Consensus       148 Tp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~  198 (301)
T 1a4i_A          148 TPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK  198 (301)
T ss_dssp             HHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             hHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECC
Confidence            334444444432   2689999999995 7999999999999999998643

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=83.73  E-value=2.3  Score=38.88  Aligned_cols=35  Identities=29%  Similarity=0.373  Sum_probs=31.0

Q ss_pred             CCCeEEEECCCh-HHHHHHHHHHhCCCcEEEEeeCC
Q 014997          132 KAKKVVVVGGGY-IGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       132 ~~~~vvVvGgG~-~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      .+++++|||.|. .|.-+|..|.+.|..||++++..
T Consensus       164 ~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T  199 (300)
T 4a26_A          164 AGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGT  199 (300)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCC
Confidence            689999999655 89999999999999999998743

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=83.66  E-value=1.1  Score=47.56  Aligned_cols=46  Identities=15%  Similarity=0.199  Sum_probs=37.3

Q ss_pred             hHHHHcCCeEEcCCcEEEEeCCCC---EEEeCCCcEEecCeEEEccCCCC
Q 014997           54 EWYKEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTA  100 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~~id~~~~---~V~~~~g~~~~yd~LviAtG~~~  100 (414)
                      +.+++.|++++.+++|++|..++.   .|.+++| ++.+|+||+|+|...
T Consensus       159 ~~a~~~Gv~i~~~t~V~~i~~~~~~v~~V~t~~G-~i~Ad~VV~AaG~~s  207 (830)
T 1pj5_A          159 KRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWG  207 (830)
T ss_dssp             HHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             HHHHHcCCEEECCceEEEEEEeCCEEEEEEECCc-EEECCEEEECCccch
Confidence            455678999999999999987544   3667777 699999999999864

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=83.62  E-value=1.2  Score=40.75  Aligned_cols=34  Identities=12%  Similarity=0.137  Sum_probs=30.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCC-cEEEEeeC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPE  165 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~  165 (414)
                      .+++++|+|+|.+|..+|..|.+.|. +|+++.|.
T Consensus       140 ~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~  174 (297)
T 2egg_A          140 DGKRILVIGAGGGARGIYFSLLSTAAERIDMANRT  174 (297)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSS
T ss_pred             CCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            57899999999999999999999997 89988775

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=83.61  E-value=0.67  Score=45.47  Aligned_cols=32  Identities=31%  Similarity=0.525  Sum_probs=29.7

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      +|+|+|+|..|..+|..|...|.+|+++++.+
T Consensus         5 ~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~   36 (461)
T 4g65_A            5 KIIILGAGQVGGTLAENLVGENNDITIVDKDG   36 (461)
T ss_dssp             EEEEECCSHHHHHHHHHTCSTTEEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            69999999999999999999999999998754

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=83.52  E-value=1.2  Score=38.23  Aligned_cols=32  Identities=22%  Similarity=0.345  Sum_probs=28.9

Q ss_pred             eEEEECC-ChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          135 KVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       135 ~vvVvGg-G~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      +|+|.|+ |.+|..++..|.+.|.+|+++.|.+
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDP   34 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence            5899997 9999999999999999999998754

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=83.50  E-value=1.4  Score=41.20  Aligned_cols=35  Identities=23%  Similarity=0.346  Sum_probs=31.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      .++++.|||.|.+|..+|..|+..|.+|+++.+..
T Consensus       149 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~  183 (334)
T 2dbq_A          149 YGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTR  183 (334)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCc
Confidence            45789999999999999999999999999887754

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=83.49  E-value=1.3  Score=41.80  Aligned_cols=35  Identities=40%  Similarity=0.544  Sum_probs=31.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      ++++|+|+|+|.+|..++..++.+|.+|+++.+.+
T Consensus       166 ~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~  200 (361)
T 1pjc_A          166 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV  200 (361)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            35899999999999999999999999999887754

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=83.48  E-value=1  Score=43.48  Aligned_cols=35  Identities=26%  Similarity=0.297  Sum_probs=31.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      .+++|+|+|.|.+|..+|..|+.+|.+|+++++.+
T Consensus       210 ~GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p  244 (436)
T 3h9u_A          210 AGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDP  244 (436)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCh
Confidence            57999999999999999999999999999887643

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=83.46  E-value=1.2  Score=43.95  Aligned_cols=37  Identities=27%  Similarity=0.293  Sum_probs=32.5

Q ss_pred             hcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          130 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       130 ~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      ...+++|+|+|.|.+|..+|..++.+|.+|+++++.+
T Consensus       271 ~l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~  307 (494)
T 3ce6_A          271 LIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDP  307 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3478999999999999999999999999988887643

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=83.40  E-value=1  Score=40.77  Aligned_cols=35  Identities=11%  Similarity=0.102  Sum_probs=31.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      .+++++|+|+|-+|..+|..|.+.|.+|+++.|..
T Consensus       118 ~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~  152 (272)
T 1p77_A          118 PNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF  152 (272)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            57899999999999999999999999999988753

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=83.39  E-value=1.4  Score=43.42  Aligned_cols=36  Identities=19%  Similarity=0.274  Sum_probs=32.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  168 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  168 (414)
                      -++|.|||+|..|.-+|..|++.|.+|+++++.+.-
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~   40 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEA   40 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHH
Confidence            468999999999999999999999999999876543

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=83.23  E-value=1.3  Score=40.89  Aligned_cols=35  Identities=14%  Similarity=0.056  Sum_probs=31.3

Q ss_pred             CCeEEEECC-ChHHHHHHHHHHhCCCcEEEEeeCCc
Q 014997          133 AKKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPENH  167 (414)
Q Consensus       133 ~~~vvVvGg-G~~g~e~A~~l~~~g~~Vtlv~~~~~  167 (414)
                      +++|+|.|+ |++|..++..|.+.|.+|+++.|.+.
T Consensus         3 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~   38 (345)
T 2z1m_A            3 GKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSG   38 (345)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCS
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCc
Confidence            578999997 99999999999999999999987653

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=83.17  E-value=1.2  Score=44.84  Aligned_cols=49  Identities=18%  Similarity=0.266  Sum_probs=37.1

Q ss_pred             HhHHHHcCCeEEcCCcEEEEeCCC-C---EEEeC--CCc--EEecCeEEEccCCCCC
Q 014997           53 PEWYKEKGIEMIYQDPVTSIDIEK-Q---TLITN--SGK--LLKYGSLIVATGCTAS  101 (414)
Q Consensus        53 ~~~~~~~~i~~~~~~~V~~id~~~-~---~V~~~--~g~--~~~yd~LviAtG~~~~  101 (414)
                      .+.+++.||+++++++|+++..++ .   -|.+.  +|+  ++.+|.||+|||....
T Consensus       257 ~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s~  313 (566)
T 1qo8_A          257 RKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGM  313 (566)
T ss_dssp             HHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTT
T ss_pred             HHHHHhcCCEEEeCCEEEEEEECCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCccc
Confidence            355667899999999999997654 3   24443  675  6899999999998653

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=83.12  E-value=0.96  Score=46.40  Aligned_cols=47  Identities=17%  Similarity=0.174  Sum_probs=34.1

Q ss_pred             HHHHc-CC-eEEcCCcEEEEeCCCC---EE---E---eCCCc--EEecCeEEEccCCCCC
Q 014997           55 WYKEK-GI-EMIYQDPVTSIDIEKQ---TL---I---TNSGK--LLKYGSLIVATGCTAS  101 (414)
Q Consensus        55 ~~~~~-~i-~~~~~~~V~~id~~~~---~V---~---~~~g~--~~~yd~LviAtG~~~~  101 (414)
                      .+++. || +++.++.|+++..+..   .|   .   +.+|+  .+.++.+|+|||....
T Consensus       160 ~~~~~~gv~~i~~~~~v~~L~~~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~~~  219 (643)
T 1jnr_A          160 AAKMAVGEENIYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGATL  219 (643)
T ss_dssp             HHHHHHCGGGEECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCS
T ss_pred             HHHhcCCCcEEEecCEEEEEEEcCCccceeEEEEEEEecCCcEEEEEcCEEEECCCcccc
Confidence            34455 99 9999999999875433   22   1   25665  5899999999998653

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=83.06  E-value=1.7  Score=43.81  Aligned_cols=49  Identities=14%  Similarity=0.209  Sum_probs=36.2

Q ss_pred             HhHHHHcCCeEEcCCcEEEEeCCC--C--EEEeC--CCc--EEecCeEEEccCCCCC
Q 014997           53 PEWYKEKGIEMIYQDPVTSIDIEK--Q--TLITN--SGK--LLKYGSLIVATGCTAS  101 (414)
Q Consensus        53 ~~~~~~~~i~~~~~~~V~~id~~~--~--~V~~~--~g~--~~~yd~LviAtG~~~~  101 (414)
                      .+.+++.||+++++++|+++..++  +  .|.+.  +|+  .+.+|.||+|||....
T Consensus       262 ~~~~~~~gv~i~~~t~v~~l~~~~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~~  318 (572)
T 1d4d_A          262 WDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAK  318 (572)
T ss_dssp             HHHHHHTTCEEESSEEEEEEEEC--CCEEEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred             HHHHHHcCCeEEecCEEEEEEECCCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCcc
Confidence            455667899999999999986543  3  24443  664  6899999999998653

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=82.96  E-value=1.2  Score=41.22  Aligned_cols=34  Identities=18%  Similarity=0.102  Sum_probs=30.8

Q ss_pred             CCCeEEEECCCh-HHHHHHHHHHhCCCcEEEEeeC
Q 014997          132 KAKKVVVVGGGY-IGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       132 ~~~~vvVvGgG~-~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      .+++++|||.|. +|.-+|..|...|.+|+++.|.
T Consensus       176 ~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~  210 (320)
T 1edz_A          176 YGKKCIVINRSEIVGRPLAALLANDGATVYSVDVN  210 (320)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             CCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCc
Confidence            689999999996 5999999999999999998775

>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*

Probab=82.75  E-value=1.4  Score=38.61  Aligned_cols=35  Identities=26%  Similarity=0.407  Sum_probs=30.9

Q ss_pred             CCCeEEEECC-----------------ChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          132 KAKKVVVVGG-----------------GYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       132 ~~~~vvVvGg-----------------G~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      .+++++|-||                 |-+|..+|..|+++|.+|+++.+..
T Consensus         7 ~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~   58 (226)
T 1u7z_A            7 KHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPV   58 (226)
T ss_dssp             TTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             CCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCc
Confidence            5788999888                 7899999999999999999987654

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=82.70  E-value=1.4  Score=37.84  Aligned_cols=32  Identities=16%  Similarity=0.236  Sum_probs=29.0

Q ss_pred             eEEEEC-CChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          135 KVVVVG-GGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       135 ~vvVvG-gG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      ++.|+| +|.+|..+|..|.+.|.+|+++.|.+
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~   34 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            689999 99999999999999999999987754

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=82.66  E-value=3.8  Score=37.08  Aligned_cols=58  Identities=24%  Similarity=0.442  Sum_probs=40.6

Q ss_pred             CCeEEEECC-ChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEc
Q 014997          133 AKKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVK  194 (414)
Q Consensus       133 ~~~vvVvGg-G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~  194 (414)
                      .++|+|.|+ |.+|..++..|.+.|.+|+++.|...-..   .++..+.+ +.+...|++++.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~---~~~~~~~~-~~l~~~~v~~v~   62 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASS---NSEKAQLL-ESFKASGANIVH   62 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTT---THHHHHHH-HHHHTTTCEEEC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCccccc---CHHHHHHH-HHHHhCCCEEEE
Confidence            468999996 99999999999999999999888653210   12222222 334567777764

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=82.55  E-value=1.3  Score=44.94  Aligned_cols=33  Identities=27%  Similarity=0.373  Sum_probs=30.1

Q ss_pred             CeEEEECCChHHHHHHHHHHh-CCCcEEEEeeCC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVG-WKLDTTIIFPEN  166 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~-~g~~Vtlv~~~~  166 (414)
                      -.++|||+|..|+-+|..|++ .|.+|.+++++.
T Consensus        25 ~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~   58 (587)
T 1gpe_A           25 YDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGF   58 (587)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            469999999999999999999 799999999774

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=82.54  E-value=1.5  Score=39.87  Aligned_cols=34  Identities=15%  Similarity=0.293  Sum_probs=30.4

Q ss_pred             CCCeEEEECCCh-HHHHHHHHHHhCCCcEEEEeeC
Q 014997          132 KAKKVVVVGGGY-IGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       132 ~~~~vvVvGgG~-~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      .+++++|||.|. .|.-+|..|.+.|..||++++.
T Consensus       159 ~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~  193 (285)
T 3p2o_A          159 EGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIK  193 (285)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            689999999665 7999999999999999999764

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=82.49  E-value=1.4  Score=39.83  Aligned_cols=35  Identities=9%  Similarity=0.208  Sum_probs=31.1

Q ss_pred             cCCCeEEEECCC-hHHHHHHHHHHhCCCcEEEEeeC
Q 014997          131 EKAKKVVVVGGG-YIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       131 ~~~~~vvVvGgG-~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      -.+++++|||.| ..|.-+|..|.+.|..||++++.
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~  183 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSK  183 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCC
Confidence            478999999976 58999999999999999999753

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=82.46  E-value=1.6  Score=40.40  Aligned_cols=35  Identities=17%  Similarity=0.216  Sum_probs=31.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCC-cEEEEeeCC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPEN  166 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~~  166 (414)
                      .+++++|+|+|-+|..+|..|++.|. +|+++.|.+
T Consensus       153 ~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~  188 (315)
T 3tnl_A          153 IGKKMTICGAGGAATAICIQAALDGVKEISIFNRKD  188 (315)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             cCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCC
Confidence            57899999999999999999999998 899998864

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=82.44  E-value=1.3  Score=40.72  Aligned_cols=36  Identities=14%  Similarity=0.123  Sum_probs=31.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  167 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  167 (414)
                      .-.+|.|||.|.+|..+|..|++.|.+|+++.+.+.
T Consensus        20 ~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   55 (310)
T 3doj_A           20 HMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLS   55 (310)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             cCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            346899999999999999999999999999987653

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=82.36  E-value=1.3  Score=41.50  Aligned_cols=33  Identities=21%  Similarity=-0.011  Sum_probs=29.7

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      .+|.|||+|.+|..+|..|++.|.+|+++.+.+
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~   37 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   37 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            589999999999999999999999999887643

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=82.30  E-value=1.5  Score=40.32  Aligned_cols=35  Identities=14%  Similarity=0.219  Sum_probs=31.1

Q ss_pred             CCCeEEEECC-ChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          132 KAKKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       132 ~~~~vvVvGg-G~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      ++++|+|.|+ |++|..++..|.+.|.+|+++.|..
T Consensus        10 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~   45 (342)
T 1y1p_A           10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSA   45 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            5688999997 9999999999999999999887753

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=82.28  E-value=1.7  Score=40.08  Aligned_cols=35  Identities=26%  Similarity=0.358  Sum_probs=31.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      .++++.|||.|.+|..+|..|...|.+|+.+.+..
T Consensus       141 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~  175 (307)
T 1wwk_A          141 EGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYP  175 (307)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCceEEEEccCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            46789999999999999999999999998887654

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=82.25  E-value=1.5  Score=40.45  Aligned_cols=34  Identities=24%  Similarity=0.330  Sum_probs=30.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCC--cEEEEeeCC
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPEN  166 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~--~Vtlv~~~~  166 (414)
                      ..+|+|||+|.+|.-+|..|+..|.  +|+++.+.+
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            3589999999999999999999998  899987753

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=82.24  E-value=1.6  Score=40.66  Aligned_cols=35  Identities=17%  Similarity=0.362  Sum_probs=32.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      .++++.|||-|.+|..+|..|+..|.+|+.+.+.+
T Consensus       139 ~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~  173 (324)
T 3hg7_A          139 KGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSG  173 (324)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             ccceEEEEEECHHHHHHHHHHHhCCCEEEEEcCCh
Confidence            36899999999999999999999999999988765

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=82.23  E-value=1.6  Score=40.78  Aligned_cols=35  Identities=26%  Similarity=0.380  Sum_probs=31.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      .++++.|||.|.+|..+|..|...|.+|+++.+..
T Consensus       163 ~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~  197 (333)
T 3ba1_A          163 SGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSK  197 (333)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCc
Confidence            36789999999999999999999999999887764

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=82.19  E-value=1.5  Score=43.48  Aligned_cols=47  Identities=17%  Similarity=0.249  Sum_probs=36.6

Q ss_pred             hHHHHcCCeEEcCCcEEEEeCCCC--EEEeCCCc---EEecCeEEEccCCCC
Q 014997           54 EWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGK---LLKYGSLIVATGCTA  100 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~~id~~~~--~V~~~~g~---~~~yd~LviAtG~~~  100 (414)
                      +.+.+.|++++.+++|++++.+..  +|++.++.   ++.+|+||.|.|.+.
T Consensus       114 ~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S  165 (500)
T 2qa1_A          114 QWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDGGRS  165 (500)
T ss_dssp             HHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECCCTTC
T ss_pred             HHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEEECCCcch
Confidence            334567999999999999976554  45566664   799999999999864

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=82.05  E-value=1.4  Score=43.11  Aligned_cols=35  Identities=20%  Similarity=0.375  Sum_probs=32.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  167 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  167 (414)
                      -++|.|||+|..|.-+|..|++.|.+|+++++.+.
T Consensus        54 i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   88 (460)
T 3k6j_A           54 VNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ   88 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence            47899999999999999999999999999988764

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=82.02  E-value=3.9  Score=35.96  Aligned_cols=34  Identities=24%  Similarity=0.155  Sum_probs=29.6

Q ss_pred             CCCeEEEECC-ChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          132 KAKKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       132 ~~~~vvVvGg-G~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      .+|.++|.|+ |.+|.++|..|++.|.+|.++.|.
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~   42 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREGAAVVVADIN   42 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCC
Confidence            5688888885 789999999999999999988764

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=81.99  E-value=1.7  Score=40.15  Aligned_cols=35  Identities=23%  Similarity=0.200  Sum_probs=31.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      .++++.|||.|.+|..+|..|...|.+|+.+.+..
T Consensus       141 ~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~  175 (313)
T 2ekl_A          141 AGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILD  175 (313)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCc
Confidence            46899999999999999999999999998887653

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=81.89  E-value=1.5  Score=39.84  Aligned_cols=34  Identities=24%  Similarity=0.216  Sum_probs=30.2

Q ss_pred             CCCeEEEECCCh-HHHHHHHHHHhCCCcEEEEeeC
Q 014997          132 KAKKVVVVGGGY-IGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       132 ~~~~vvVvGgG~-~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      .+++++|||.|. .|.-+|..|.+.|..||++++.
T Consensus       160 ~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~  194 (285)
T 3l07_A          160 EGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF  194 (285)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC
Confidence            689999999665 7999999999999999998754

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=81.75  E-value=1.9  Score=43.63  Aligned_cols=47  Identities=23%  Similarity=0.355  Sum_probs=37.3

Q ss_pred             hHHHHcCCeEEcCCcEEEEeCC-C--CEEEeC-CC--cEEecCeEEEccCCCC
Q 014997           54 EWYKEKGIEMIYQDPVTSIDIE-K--QTLITN-SG--KLLKYGSLIVATGCTA  100 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~~id~~-~--~~V~~~-~g--~~~~yd~LviAtG~~~  100 (414)
                      +.+++.|++++.+++|+++..+ +  ..|++. +|  .++.+|.||.|+|...
T Consensus       136 ~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~G~~~~i~AdlVV~AdG~~S  188 (591)
T 3i3l_A          136 DEARSRGITVHEETPVTDVDLSDPDRVVLTVRRGGESVTVESDFVIDAGGSGG  188 (591)
T ss_dssp             HHHHHTTCEEETTCCEEEEECCSTTCEEEEEEETTEEEEEEESEEEECCGGGC
T ss_pred             HHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEecCCceEEEEcCEEEECCCCcc
Confidence            3455689999999999999865 3  256666 66  5799999999999864

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=81.74  E-value=1.8  Score=40.26  Aligned_cols=37  Identities=14%  Similarity=0.106  Sum_probs=32.7

Q ss_pred             cCCCeEEEECC-ChHHHHHHHHHHhCCCcEEEEeeCCc
Q 014997          131 EKAKKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPENH  167 (414)
Q Consensus       131 ~~~~~vvVvGg-G~~g~e~A~~l~~~g~~Vtlv~~~~~  167 (414)
                      ..+++|+|.|+ |++|..++..|.+.|.+|+.+.|...
T Consensus        23 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   60 (351)
T 3ruf_A           23 FSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFST   60 (351)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            36789999995 99999999999999999999988653

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=81.73  E-value=1.1  Score=45.31  Aligned_cols=33  Identities=27%  Similarity=0.310  Sum_probs=30.2

Q ss_pred             eEEEECCChHHHHHHHHHHhCC-CcEEEEeeCCc
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENH  167 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~  167 (414)
                      .++|||+|..||-+|..|++.+ .+|.|+++++.
T Consensus         8 DyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~   41 (577)
T 3q9t_A            8 DFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG   41 (577)
T ss_dssp             EEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            6899999999999999999987 69999998865

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=81.71  E-value=1.8  Score=39.95  Aligned_cols=35  Identities=23%  Similarity=0.274  Sum_probs=31.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      .++++.|||.|.+|..+|..|...|.+|+.+.+..
T Consensus       143 ~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~  177 (311)
T 2cuk_A          143 QGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTP  177 (311)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCEEEEEEECHHHHHHHHHHHHCCCEEEEECCCC
Confidence            45789999999999999999999999999887754

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=81.69  E-value=1.7  Score=39.50  Aligned_cols=35  Identities=31%  Similarity=0.320  Sum_probs=31.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCC-cEEEEeeCC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPEN  166 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~~  166 (414)
                      .+++++|+|+|-+|..++..|.+.|. +|+++.|..
T Consensus       126 ~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~  161 (283)
T 3jyo_A          126 KLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT  161 (283)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCH
Confidence            57899999999999999999999998 699887753

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=81.63  E-value=1.7  Score=41.19  Aligned_cols=33  Identities=12%  Similarity=-0.008  Sum_probs=29.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEee
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP  164 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~  164 (414)
                      .+++|+|+|.|.+|..+|..|.+.|.+|++.++
T Consensus       172 ~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~  204 (364)
T 1leh_A          172 EGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDV  204 (364)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CcCEEEEECchHHHHHHHHHHHHCCCEEEEEcC
Confidence            679999999999999999999999999886653

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=81.62  E-value=1.2  Score=44.79  Aligned_cols=33  Identities=27%  Similarity=0.320  Sum_probs=30.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhC-CCcEEEEeeCC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPEN  166 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~-g~~Vtlv~~~~  166 (414)
                      -.++|||+|..|+-+|..|++. +.+|.+++++.
T Consensus        14 ~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~   47 (546)
T 2jbv_A           14 FDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGP   47 (546)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCC
Confidence            4699999999999999999998 89999999874

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=81.60  E-value=2.9  Score=38.48  Aligned_cols=33  Identities=18%  Similarity=0.058  Sum_probs=29.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCC-cEEEEeeC
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPE  165 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~  165 (414)
                      ..+|.|||.|..|.-+|..|.+.|. +|+++.+.
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~   57 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA   57 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence            3689999999999999999999998 89988775

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=81.58  E-value=1.2  Score=38.46  Aligned_cols=35  Identities=23%  Similarity=0.510  Sum_probs=31.2

Q ss_pred             CeEEEEC-CChHHHHHHHHHHhCCCcEEEEeeCCcc
Q 014997          134 KKVVVVG-GGYIGMEVAAAAVGWKLDTTIIFPENHL  168 (414)
Q Consensus       134 ~~vvVvG-gG~~g~e~A~~l~~~g~~Vtlv~~~~~~  168 (414)
                      ++|+|.| +|.+|..++..|.+.|.+|+++.|.+.-
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~   40 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEK   40 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGG
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCccc
Confidence            6899999 4999999999999999999999887543

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=81.54  E-value=1.9  Score=40.01  Aligned_cols=36  Identities=22%  Similarity=0.374  Sum_probs=32.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  167 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  167 (414)
                      .++++.|||-|.+|..+|..|...|.+|..+.+.+.
T Consensus       136 ~gktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~  171 (324)
T 3evt_A          136 TGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGH  171 (324)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             cCCeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcc
Confidence            368999999999999999999999999999887654

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=81.48  E-value=1  Score=40.87  Aligned_cols=34  Identities=24%  Similarity=0.190  Sum_probs=30.7

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  167 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  167 (414)
                      ++|.|||.|.+|..+|..|++.|.+|+++.|.+.
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPA   35 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            4799999999999999999999999999987653

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=81.38  E-value=1.4  Score=43.13  Aligned_cols=35  Identities=17%  Similarity=0.216  Sum_probs=31.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  167 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  167 (414)
                      -++|.|||+|..|.-+|..|++.|.+|+++++.+.
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~   71 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPK   71 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            36799999999999999999999999999987654

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=81.36  E-value=1.3  Score=39.54  Aligned_cols=35  Identities=31%  Similarity=0.227  Sum_probs=30.7

Q ss_pred             CCCeEEEECC-Ch-HHHHHHHHHHhCCCcEEEEeeCC
Q 014997          132 KAKKVVVVGG-GY-IGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       132 ~~~~vvVvGg-G~-~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      .++.++|.|+ |. +|.++|..|++.|.+|.++.|..
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~   57 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHE   57 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCH
Confidence            5789999998 75 99999999999999999887754

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=81.32  E-value=1.1  Score=45.25  Aligned_cols=47  Identities=19%  Similarity=0.205  Sum_probs=37.3

Q ss_pred             hHHHHcCCeEEcCCcEEEEeCCCC--EEEe--CCC-cEEecCeEEEccCCCC
Q 014997           54 EWYKEKGIEMIYQDPVTSIDIEKQ--TLIT--NSG-KLLKYGSLIVATGCTA  100 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~~id~~~~--~V~~--~~g-~~~~yd~LviAtG~~~  100 (414)
                      +.+++.|++++.+++|++++.+..  +|++  .+| +++.+|+||.|.|.+.
T Consensus       156 ~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~ADG~~S  207 (570)
T 3fmw_A          156 EHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDGGRS  207 (570)
T ss_dssp             HHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECSCSSC
T ss_pred             HHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcCCCCc
Confidence            334556999999999999987654  5555  678 6899999999999864

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=81.32  E-value=0.92  Score=46.32  Aligned_cols=49  Identities=12%  Similarity=0.102  Sum_probs=35.5

Q ss_pred             HhHHHHcCCeEEcCCcEEEEeCCCCE---EEe---CCCc--EEecCeEEEccCCCCC
Q 014997           53 PEWYKEKGIEMIYQDPVTSIDIEKQT---LIT---NSGK--LLKYGSLIVATGCTAS  101 (414)
Q Consensus        53 ~~~~~~~~i~~~~~~~V~~id~~~~~---V~~---~~g~--~~~yd~LviAtG~~~~  101 (414)
                      .+.+.+.||+++.++.|+++..++..   |.+   .+|+  .+.++.||+|||....
T Consensus       162 ~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~  218 (621)
T 2h88_A          162 YGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIEDGTIHRFRAKNTVIATGGYGR  218 (621)
T ss_dssp             HHHHTTSCCEEEETEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCCCCGG
T ss_pred             HHHHHhCCCEEEEceEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccc
Confidence            34455679999999999998654432   232   4665  6899999999998643

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=81.29  E-value=1.5  Score=40.05  Aligned_cols=34  Identities=26%  Similarity=0.258  Sum_probs=30.6

Q ss_pred             CCeEEEEC-CChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          133 AKKVVVVG-GGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       133 ~~~vvVvG-gG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      .++|.||| .|.+|..+|..|++.|.+|+++.+.+
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~   55 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDRED   55 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCc
Confidence            35899999 99999999999999999999997654

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=81.29  E-value=1.4  Score=43.37  Aligned_cols=35  Identities=14%  Similarity=0.274  Sum_probs=31.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      ..-+|.|||.|.+|+-+|..|++.|.+|+++.+.+
T Consensus         7 ~~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~   41 (478)
T 2y0c_A            7 GSMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ   41 (478)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            34689999999999999999999999999998764

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=81.27  E-value=1.8  Score=39.26  Aligned_cols=34  Identities=32%  Similarity=0.365  Sum_probs=31.0

Q ss_pred             CCCeEEEEC-CChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          132 KAKKVVVVG-GGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       132 ~~~~vvVvG-gG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      ++++++|+| +|.+|..+|..|.+.|.+|+++.|.
T Consensus       118 ~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~  152 (287)
T 1lu9_A          118 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRK  152 (287)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            578999999 8999999999999999999888775

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=81.25  E-value=1.2  Score=40.49  Aligned_cols=36  Identities=11%  Similarity=0.080  Sum_probs=32.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCC-cEEEEeeCCc
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENH  167 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~  167 (414)
                      .+++++|+|+|-+|.-+|..|.+.|. +|+++.|...
T Consensus       116 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~  152 (277)
T 3don_A          116 EDAYILILGAGGASKGIANELYKIVRPTLTVANRTMS  152 (277)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGG
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHH
Confidence            57899999999999999999999998 8999988653

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=81.20  E-value=4.1  Score=37.33  Aligned_cols=32  Identities=16%  Similarity=0.161  Sum_probs=30.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      ++|-+||-|..|.-+|..|.+.|.+|+++.|.
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~   35 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLV   35 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSS
T ss_pred             CEEEEeeehHHHHHHHHHHHhCCCeEEEEcCC
Confidence            68999999999999999999999999999877

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=81.20  E-value=1.6  Score=39.93  Aligned_cols=34  Identities=18%  Similarity=0.160  Sum_probs=28.5

Q ss_pred             CCeEEEECC-ChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          133 AKKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       133 ~~~vvVvGg-G~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      +++|+|.|+ |++|..++..|.+.|.+|+++.|..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   36 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRR   36 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC---
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCC
Confidence            468999997 9999999999999999999988643

>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1

Probab=81.19  E-value=0.45  Score=46.88  Aligned_cols=73  Identities=15%  Similarity=0.071  Sum_probs=51.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEE
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK  213 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~  213 (414)
                      ..|.|.|.|-+|+  |..|.++|.+|+..+....       +..     +.|++.|++++.+..       .+ .     
T Consensus        16 h~i~I~G~G~sgl--A~~l~~~G~~V~g~D~~~~-------~~~-----~~L~~~gi~~~~g~~-------~~-~-----   68 (469)
T 1j6u_A           16 HFVGIGGIGMSAV--ALHEFSNGNDVYGSNIEET-------ERT-----AYLRKLGIPIFVPHS-------AD-N-----   68 (469)
T ss_dssp             EEETTTSHHHHHH--HHHHHHTTCEEEEECSSCC-------HHH-----HHHHHTTCCEESSCC-------TT-S-----
T ss_pred             EEEEEcccCHHHH--HHHHHhCCCEEEEEcCCCC-------HHH-----HHHHhCCCEEECCCC-------HH-H-----
Confidence            4577888899988  8999999999999876542       111     346778999886531       01 0     


Q ss_pred             eCCCcEEecCEEEEccCCcCCChhh
Q 014997          214 LEDGSTIDADTIVIGIGAKPTVSPF  238 (414)
Q Consensus       214 ~~~g~~i~~D~vi~a~G~~p~~~~l  238 (414)
                      +     -.+|+||.++|..++.+.+
T Consensus        69 ~-----~~~d~vV~spgi~~~~p~~   88 (469)
T 1j6u_A           69 W-----YDPDLVIKTPAVRDDNPEI   88 (469)
T ss_dssp             C-----CCCSEEEECTTCCTTCHHH
T ss_pred             C-----CCCCEEEECCCcCCCCHHH
Confidence            1     1479999999998866543

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=81.17  E-value=1.6  Score=39.92  Aligned_cols=34  Identities=26%  Similarity=0.140  Sum_probs=30.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      ..+|.|||.|.+|.-+|..|++.|.+|+++.+.+
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   40 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP   40 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            4689999999999999999999999999987654

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=81.02  E-value=1.5  Score=40.88  Aligned_cols=35  Identities=23%  Similarity=0.261  Sum_probs=31.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      .++++.|||.|.+|..+|..|+..|.+|+++.+..
T Consensus       145 ~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~  179 (333)
T 2d0i_A          145 YGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHR  179 (333)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSC
T ss_pred             CcCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCc
Confidence            46789999999999999999999999998887654

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=81.01  E-value=1.5  Score=40.50  Aligned_cols=35  Identities=26%  Similarity=0.322  Sum_probs=31.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCC-cEEEEeeCCc
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENH  167 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~  167 (414)
                      ..+|.|||+|.+|.-+|..|+..|. +|+++++.+.
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~   39 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEG   39 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCch
Confidence            4689999999999999999999887 8999987654

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=80.99  E-value=3.3  Score=36.80  Aligned_cols=35  Identities=17%  Similarity=0.153  Sum_probs=29.6

Q ss_pred             CCCeEEEEC-CChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          132 KAKKVVVVG-GGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       132 ~~~~vvVvG-gG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      .++.++|.| +|.+|.++|..|++.|.+|.++.|..
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~   63 (262)
T 3rkr_A           28 SGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDV   63 (262)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCH
Confidence            567888887 48899999999999999998887643

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=80.97  E-value=2.3  Score=43.01  Aligned_cols=47  Identities=26%  Similarity=0.309  Sum_probs=35.9

Q ss_pred             hHHHHcCCeEEcCCcEEEEeCCC--CE--EEeC------CC---------cEEecCeEEEccCCCC
Q 014997           54 EWYKEKGIEMIYQDPVTSIDIEK--QT--LITN------SG---------KLLKYGSLIVATGCTA  100 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~~id~~~--~~--V~~~------~g---------~~~~yd~LviAtG~~~  100 (414)
                      +.+++.|++++.+++|+++..+.  +.  |.+.      +|         .++.+|+||+|+|.+.
T Consensus       152 ~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S  217 (584)
T 2gmh_A          152 EQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHG  217 (584)
T ss_dssp             HHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTC
T ss_pred             HHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCCc
Confidence            34456799999999999987653  32  5555      33         5799999999999874

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=80.96  E-value=1.7  Score=42.91  Aligned_cols=35  Identities=23%  Similarity=0.193  Sum_probs=32.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      .+++|+|||.|.+|..+|..|+.+|.+|+++++.+
T Consensus       276 ~GktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~  310 (494)
T 3d64_A          276 AGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDP  310 (494)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSCH
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            67999999999999999999999999999987653

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=80.93  E-value=1.9  Score=37.82  Aligned_cols=34  Identities=12%  Similarity=0.023  Sum_probs=29.9

Q ss_pred             CeEEEECC-ChHHHHHHHHHHhCCCcEEEEeeCCc
Q 014997          134 KKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPENH  167 (414)
Q Consensus       134 ~~vvVvGg-G~~g~e~A~~l~~~g~~Vtlv~~~~~  167 (414)
                      ++++|.|+ |.+|..+|..|.+.|.+|+++.|.+.
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~   36 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQA   36 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChh
Confidence            46888886 99999999999999999999988754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	414
d1q1ra2	133	c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseud	2e-24
d1d7ya2	121	c.3.1.5 (A:116-236) NADH-dependent ferredoxin redu	4e-24
d1m6ia2	137	c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF	6e-23
d1nhpa2	123	c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus	5e-22
d1xhca2	122	c.3.1.5 (A:104-225) NADH oxidase /nitrite reductas	1e-17
d1gesa2	116	c.3.1.5 (A:147-262) Glutathione reductase {Escheri	3e-17
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	1e-16
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	0.003
d1q1ra1	185	c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas	5e-16
d1onfa2	117	c.3.1.5 (A:154-270) Glutathione reductase {Plasmod	9e-16
d1aoga2	117	c.3.1.5 (A:170-286) Trypanothione reductase {Trypa	7e-14
d1mo9a2	121	c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl co	3e-13
d1nhpa1	198	c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter	1e-12
d1h6va2	122	c.3.1.5 (A:171-292) Mammalian thioredoxin reductas	2e-12
d1feca2	117	c.3.1.5 (A:170-286) Trypanothione reductase {Crith	5e-12
d1lvla2	115	c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase	1e-10
d3grsa2	125	c.3.1.5 (A:166-290) Glutathione reductase {Human (	1e-09
d1m6ia1	213	c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f	1e-09
d1m6ia1	213	c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f	5e-05
d1djqa2	156	c.3.1.1 (A:490-645) Trimethylamine dehydrogenase,	2e-09
d1trba1	190	c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase	6e-09
d1ebda2	117	c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase	8e-09
d1ojta2	125	c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase	1e-08
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	1e-08
d3lada2	119	c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase	1e-08
d1xhca1	167	c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite	2e-08
d1v59a2	122	c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase	2e-08
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	9e-08
d1fcda1	186	c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf	1e-07
d1dxla2	123	c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase	1e-06
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	1e-06
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	2e-06
d1fl2a1	184	c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide	6e-06
d1feca1	240	c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas	1e-05
d1ps9a2	162	c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-t	1e-05
d1vdca1	192	c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase	2e-05
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	4e-05
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	7e-05
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	8e-05
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	8e-05
d1lvla1	220	c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd	3e-04
d1xdia1	233	c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd	0.001
d1gtea4	196	c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de	0.002
d1aoga1	238	c.3.1.5 (A:3-169,A:287-357) Trypanothione reductas	0.002
d1gtea3	153	c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenas	0.003
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	0.003
d3lada1	229	c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd	0.003
d1seza1	373	c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox	0.003
d1djqa3	233	c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehyd	0.004
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	0.004

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 133

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 95.8 bits (237), Expect = 2e-24
 Identities = 42/128 (32%), Positives = 69/128 (53%), Gaps = 1/128 (0%)

Query: 104 PEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF 163
                G      Y+R + DA+ +   L    ++VV+GGGYIG+EVAA A+   +  T++ 
Sbjct: 6   ASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLD 65

Query: 164 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG-RVAAVKLEDGSTIDA 222
               +L+R+  P ++  YE L+++ GV    G  +   E  +D  +V AV  EDG+ + A
Sbjct: 66  TAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPA 125

Query: 223 DTIVIGIG 230
           D ++ GIG
Sbjct: 126 DLVIAGIG 133

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 121

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 94.4 bits (234), Expect = 4e-24
 Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 6/124 (4%)

Query: 107 IGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 166
           + G    VH +R + DA  + + L    ++++VGGG IG+E+AA A    +  +++  + 
Sbjct: 4   LQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQP 63

Query: 167 HLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 226
            L+ R    +LA    + +   GV      S+     G       V L+DG+ I AD +V
Sbjct: 64  RLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSVDG------VVLLDDGTRIAADMVV 117

Query: 227 IGIG 230
           +GIG
Sbjct: 118 VGIG 121

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.8 bits (227), Expect = 6e-23
 Identities = 27/132 (20%), Positives = 55/132 (41%), Gaps = 6/132 (4%)

Query: 103 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAV----GWKLD 158
                          R + D  +L     + K + ++GGG++G E+A A          +
Sbjct: 7   IDRAGAEVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTE 66

Query: 159 TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS 218
              +FPE   + ++    L+    +  ++ GVK +  A ++++          +KL+DG 
Sbjct: 67  VIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGV--SSGKLLIKLKDGR 124

Query: 219 TIDADTIVIGIG 230
            ++ D IV  +G
Sbjct: 125 KVETDHIVAAVG 136

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 123

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 88.8 bits (219), Expect = 5e-22
 Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 5/124 (4%)

Query: 108 GGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 165
           G  L  ++ +R    A  L       +   VVV+G GYIG+E A A        T+I   
Sbjct: 3   GKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDIL 62

Query: 166 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 225
           +  L             +  + N +    G +++  E   DGRV  V + D +  DAD +
Sbjct: 63  DRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEG--DGRVQKV-VTDKNAYDADLV 119

Query: 226 VIGI 229
           V+ +
Sbjct: 120 VVAV 123

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 76.7 bits (188), Expect = 1e-17
 Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 12/123 (9%)

Query: 111 LPG---VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH 167
           + G   +  +R + DAD +  S+E + + +++GGG+IG+E+A           +I     
Sbjct: 7   IKGKEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM 66

Query: 168 LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 227
            L       L+   + + ++ GVKF   + +   EA  +G      L +   I+    + 
Sbjct: 67  FLG--LDEELSNMIKDMLEETGVKFFLNSELL--EANEEGV-----LTNSGFIEGKVKIC 117

Query: 228 GIG 230
            IG
Sbjct: 118 AIG 120

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 116

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 74.8 bits (183), Expect = 3e-17
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 5/120 (4%)

Query: 111 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 170
           +PGV Y  D     AL       ++V VVG GYIG+E+     G    T +    +  L 
Sbjct: 2   IPGVEYGIDSDGFFAL---PALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP 58

Query: 171 RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 230
                  ++   ++    G +    A  K +   +DG +  ++LEDG +   D ++  IG
Sbjct: 59  SFDPMI-SETLVEVMNAEGPQLHTNAIPKAVVKNTDGSL-TLELEDGRSETVDCLIWAIG 116

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 75.5 bits (184), Expect = 1e-16
 Identities = 38/182 (20%), Positives = 66/182 (36%), Gaps = 18/182 (9%)

Query: 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE----------Q 183
             VVV+G G   +   A          I    +   +    P L++ +            
Sbjct: 4   APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLD 63

Query: 184 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL 243
             +   V+++ G + +      D +   V L DG T+   T+V+  GA P          
Sbjct: 64  CKRAPEVEWLLGVTAQ----SFDPQAHTVALSDGRTLPYGTLVLATGAAPRAVLANDALA 119

Query: 244 NSSV----GGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKA 299
            ++      GI VD   RT  P ++A+GDV      +  R  R+E   +A+       + 
Sbjct: 120 RAAGLACDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARH 179

Query: 300 LL 301
           L+
Sbjct: 180 LV 181

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 36.2 bits (82), Expect = 0.003
 Identities = 19/112 (16%), Positives = 38/112 (33%), Gaps = 14/112 (12%)

Query: 53  PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKI----- 107
            +  +   +E +      S D +  T+  + G+ L YG+L++ATG               
Sbjct: 62  LDCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRAVLANDALARA 121

Query: 108 ------GGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAV 153
                  G     +      D  AL    +  ++   + G +  +E  + A 
Sbjct: 122 AGLACDDGIFVDAYGRTTCPDVYALG---DVTRQRNPLSGRFERIETWSNAQ 170

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 73.6 bits (179), Expect = 5e-16
 Identities = 40/182 (21%), Positives = 62/182 (34%), Gaps = 16/182 (8%)

Query: 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTII--------------FPENHLLQRLFTPSLAQ 179
             VV+VG G  G+EVA        +  I                 + +L  +    SL  
Sbjct: 4   DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYL 63

Query: 180 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE 239
           R    Y    ++ + G  +  +      +V                  G    P      
Sbjct: 64  RTPDAYAAQNIQLLGGTQVTAINRDRQ-QVILSDGRALDYDRLVLATGGRPLIPNCELAS 122

Query: 240 RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKA 299
             GL     GI ++   +T  P I A+GD A F  ++YDR  R+E V +A + A+     
Sbjct: 123 AAGLQV-DNGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAI 181

Query: 300 LL 301
           L 
Sbjct: 182 LC 183

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 70.9 bits (173), Expect = 9e-16
 Identities = 27/128 (21%), Positives = 58/128 (45%), Gaps = 12/128 (9%)

Query: 103 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTII 162
           FP      + G+       +      +++++KK+ +VG GYI +E+        +D+ I 
Sbjct: 1   FPP-----VKGIENTISSDEFF----NIKESKKIGIVGSGYIAVELINVIKRLGIDSYIF 51

Query: 163 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 222
              N +L++ F  S+    E   ++N +  V  A +  ++  SD  + ++ L DG   + 
Sbjct: 52  ARGNRILRK-FDESVINVLENDMKKNNINIVTFADVVEIKKVSDKNL-SIHLSDGRIYEH 109

Query: 223 -DTIVIGI 229
            D ++  +
Sbjct: 110 FDHVIYCV 117

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 65.6 bits (159), Expect = 7e-14
 Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 6/121 (4%)

Query: 111 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAA--VGWKLDTTIIFPENHL 168
           +PG+ +     +A  L    E  ++V+ VGGG+I +E A        K     +     +
Sbjct: 1   IPGIEHCISSNEAFYL---PEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEM 57

Query: 169 LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG 228
           + R F  +L +   +    NG++ +   +   +E  +DG   +V  E G  +D D +++ 
Sbjct: 58  ILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGSK-SVTFESGKKMDFDLVMMA 116

Query: 229 I 229
           I
Sbjct: 117 I 117

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 121

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 64.2 bits (155), Expect = 3e-13
 Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 6/116 (5%)

Query: 120 VADADALISSL--EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSL 177
           V D   L+  L  E    VVVVGG    +E           T ++     L       + 
Sbjct: 7   VFDHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNET- 65

Query: 178 AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV---KLEDGSTIDADTIVIGIG 230
                   ++ G++ + G+++  +E  ++GRV AV          I+ D + +G+G
Sbjct: 66  RAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG 121

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 64.1 bits (154), Expect = 1e-12
 Identities = 31/190 (16%), Positives = 56/190 (29%), Gaps = 23/190 (12%)

Query: 135 KVVVVGGGYIGMEVAAAA--VGWKLDTTIIFPENHLL------------QRLFTPSLAQR 180
           KV+V+G  + G E       +    +       + +             +     S+   
Sbjct: 2   KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYM 61

Query: 181 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV-KLEDGSTIDADTIVIGIGAKPTVSPFE 239
             +  +  GV       I  ++              +    + D ++I  GA P      
Sbjct: 62  TGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGV 121

Query: 240 RVGLNSSV--------GGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ 291
           R               G I+ D   RT  P +FA+GD         D    +    +AR+
Sbjct: 122 RPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARK 181

Query: 292 SAQHCIKALL 301
             +  +K L 
Sbjct: 182 QGRFAVKNLE 191

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.3 bits (148), Expect = 2e-12
 Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 9/118 (7%)

Query: 120 VADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQ 179
              +D L S      K +VVG  Y+ +E A    G  LD T++     L    F   +A 
Sbjct: 7   CISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRG--FDQDMAN 64

Query: 180 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL-------EDGSTIDADTIVIGIG 230
           +  +  +++G+KF++      +E    G    +K+       E+    + +T+++ +G
Sbjct: 65  KIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG 122

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 60.2 bits (145), Expect = 5e-12
 Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 3/102 (2%)

Query: 131 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE--NHLLQRLFTPSLAQRYEQLYQQN 188
           E  K+ + VGGGYI +E A     +K     +       ++ R F   L ++  +  + N
Sbjct: 16  EAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRAN 75

Query: 189 GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 230
           G+      +   +   +DG    V  E G+  D D +++ IG
Sbjct: 76  GINVRTHENPAKVTKNADGTR-HVVFESGAEADYDVVMLAIG 116

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 115

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 56.4 bits (135), Expect = 1e-10
 Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 8/121 (6%)

Query: 111 LP-GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 169
           LP G   I     +   ++     + +VVVGGGYIG+E+  A        +++     +L
Sbjct: 2   LPLGGPVI----SSTEALAPKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERIL 57

Query: 170 QRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI 229
               +   A   E L ++ G+    G S++  E G    +A         ++AD +++ +
Sbjct: 58  PTYDSELTAPVAESL-KKLGIALHLGHSVEGYENG--CLLANDGKGGQLRLEADRVLVAV 114

Query: 230 G 230
           G
Sbjct: 115 G 115

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (128), Expect = 1e-09
 Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 11/127 (8%)

Query: 111 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 170
           +PG            L    E   + V+VG GYI +E+A         T+++   + +L+
Sbjct: 3   IPGASLGITSDGFFQL---EELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLR 59

Query: 171 RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG-RVAAVKLEDG------STIDAD 223
             F   ++    +  +  GV+ +K + +K ++    G  V+ V    G         D D
Sbjct: 60  S-FDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVD 118

Query: 224 TIVIGIG 230
            ++  IG
Sbjct: 119 CLLWAIG 125

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (133), Expect = 1e-09
 Identities = 33/218 (15%), Positives = 65/218 (29%), Gaps = 46/218 (21%)

Query: 134 KKVVVVGGGYIGMEVAAA--AVGWKLDTTIIFPENH------------------------ 167
              +++GGG      A +  A        I+  +                          
Sbjct: 5   VPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTL 64

Query: 168 -----------LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED 216
                      +  +  +  ++ +     +  GV  + G  +  L+   +        + 
Sbjct: 65  RFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQI 124

Query: 217 GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKM 276
                      G      ++    + ++S  GG +V+ + + R   I+  GD A F    
Sbjct: 125 TYEKCLIAT-GGTEPNVELAKTGGLEIDSDFGGFRVNAELQARS-NIWVAGDAACFYDIK 182

Query: 277 YDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYF 314
             R  RVEH DHA  S +   + +  A        PY+
Sbjct: 183 LGRR-RVEHHDHAVVSGRLAGENMTGAAK------PYW 213

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 5e-05
 Identities = 34/169 (20%), Positives = 52/169 (30%), Gaps = 20/169 (11%)

Query: 3   DGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP--------- 53
             R+ IVS++   PY RP L+K   F  D  P           +G ER            
Sbjct: 29  GARVLIVSEDPELPYMRPPLSKELWFSDD--PNVTKTLRFKQWNGKERSIYFQPPSFYVS 86

Query: 54  ----EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGG 109
                  +  G+ ++    V  +D+    +  N G  + Y   ++ATG T         G
Sbjct: 87  AQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTEPNVELAKTG 146

Query: 110 YLPGVHYIRDVADADALISS-----LEKAKKVVVVGGGYIGMEVAAAAV 153
            L              L +         A     +  G   +E    AV
Sbjct: 147 GLEIDSDFGGFRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAV 195

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 156

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

 Score = 53.7 bits (128), Expect = 2e-09
 Identities = 14/149 (9%), Positives = 36/149 (24%), Gaps = 8/149 (5%)

Query: 95  ATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVG 154
             G          G        +            + K   ++     ++   +A     
Sbjct: 4   TDGTNCLTHDPIPGADASLPDQL-TPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLAT 62

Query: 155 WKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL 214
              + TI+   +      FT        +   +  V+ +       +E G       +++
Sbjct: 63  AGHEVTIVSGVHLANYMHFTLE-YPNMMRRLHELHVEELGDHFCSRIEPGR------MEI 115

Query: 215 EDGSTIDADTIVIGIGAKPTVSPFERVGL 243
            +     +     G G  P  +      +
Sbjct: 116 YNIWGDGSKRTYRGPGVSPRDANTSHRWI 144

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

 Score = 53.3 bits (127), Expect = 6e-09
 Identities = 29/164 (17%), Positives = 49/164 (29%), Gaps = 20/164 (12%)

Query: 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK 191
           K  K++++G G  G   A  A    L   +I       Q   T  +           G  
Sbjct: 4   KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPL 63

Query: 192 FVKGASIKNLEAGSDGRVAAVKLEDGST-----------IDADTIVIGIGAKP----TVS 236
            ++       +  ++     +   D                 D ++I  GA        +
Sbjct: 64  LMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYHSPNT 123

Query: 237 PFERVGLNSSVGGIQVDG-----QFRTRMPGIFAIGDVAAFPLK 275
                 L    G I+V         +T +PG+FA GDV     +
Sbjct: 124 AIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYR 167

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 51.4 bits (122), Expect = 8e-09
 Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 2/117 (1%)

Query: 112 PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR 171
           P   +   + D+   ++  E  K +VV+GGGYIG+E+  A   +    TI+     +L  
Sbjct: 1   PNFKFSNRILDSTGALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG 60

Query: 172 LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG-RVAAVKLEDGSTIDADTIVI 227
            F   +A   ++  ++ GV+ V  A  K  E   DG  V      +  TIDAD +++
Sbjct: 61  -FEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLV 116

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 125

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 51.0 bits (121), Expect = 1e-08
 Identities = 18/122 (14%), Positives = 45/122 (36%), Gaps = 3/122 (2%)

Query: 111 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 170
           LP +     + D+   ++  E   K++++GGG IG+E+            ++   +  L 
Sbjct: 4   LPFIPEDPRIIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDG-LM 62

Query: 171 RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIG 228
           +     L + +++  +      +       +E   DG     +  +        D +++ 
Sbjct: 63  QGADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVA 122

Query: 229 IG 230
            G
Sbjct: 123 AG 124

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 53.4 bits (127), Expect = 1e-08
 Identities = 28/218 (12%), Positives = 59/218 (27%), Gaps = 58/218 (26%)

Query: 114 VHYIRDVADADALISSLEKAKK----VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL- 168
           +  I +  D   +I ++++        + +GGG  G   +A          I+     L 
Sbjct: 19  IDEILEAPDGGEVIYNVDENDPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLG 78

Query: 169 ---LQRLFTPS-----------------------------------LAQRYEQLYQQNGV 190
                    P                                    +          +G+
Sbjct: 79  GSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGI 138

Query: 191 KFVKGASIKNLEAGSDGRV----AAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS 246
              +     NLE   +              G    A  +++ +GA P          ++ 
Sbjct: 139 MNFQSKEQLNLEYILNCPAKVIDNHTVEAAGKVFKAKNLILAVGAGPGTLDVPEQPRSAE 198

Query: 247 V-----------GGIQVDGQFRTRMPGIFAIGDVAAFP 273
           +           G + V+   +T +P ++A+GD+   P
Sbjct: 199 LAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGP 236

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 119

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 50.5 bits (120), Expect = 1e-08
 Identities = 20/112 (17%), Positives = 47/112 (41%), Gaps = 2/112 (1%)

Query: 120 VADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQ 179
           + D+   +       K+ V+G G IG+E+ +       + T++   +          +A+
Sbjct: 9   IVDSTGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK-FLPAVDEQVAK 67

Query: 180 RYEQLYQQNGVKFVKGASIKNLEAGSDG-RVAAVKLEDGSTIDADTIVIGIG 230
             +++  + G+K + GA +   E  +    V  V  E   +   D +++ +G
Sbjct: 68  EAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG 119

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 51.6 bits (122), Expect = 2e-08
 Identities = 38/173 (21%), Positives = 58/173 (33%), Gaps = 15/173 (8%)

Query: 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVK 194
           KVV+VG G  G E+A        + T+I  E          S          +     + 
Sbjct: 2   KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLD 60

Query: 195 ------GASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVG 248
                        EA    R   V + +   +  DT+V+  GA        R G+++   
Sbjct: 61  WYRKRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPNV-DLARRSGIHTG-R 118

Query: 249 GIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 301
           GI +D  FRT    ++AIGD A +                A + A+     L 
Sbjct: 119 GILIDDNFRTSAKDVYAIGDCAEYSG------IIAGTAKAAMEQARVLADILK 165

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.2 bits (119), Expect = 2e-08
 Identities = 20/122 (16%), Positives = 53/122 (43%), Gaps = 7/122 (5%)

Query: 112 PGVHYI-RDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 170
           PG+      +  +   +S  E  K++ ++GGG IG+E+ +         T++  +   + 
Sbjct: 1   PGIEIDEEKIVSSTGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQ-IG 59

Query: 171 RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTI 225
                 +A+  ++  ++ G+ F     + + +   D  V  + +ED        ++A+ +
Sbjct: 60  ASMDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVL 119

Query: 226 VI 227
           ++
Sbjct: 120 LV 121

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 50.2 bits (119), Expect = 9e-08
 Identities = 47/234 (20%), Positives = 71/234 (30%), Gaps = 74/234 (31%)

Query: 136 VVVVGGGYIGMEVAAAAVGWKLDTTII--------------------------------- 162
            +VVG G  G   A  A       TI+                                 
Sbjct: 6   TLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHS 65

Query: 163 -------------FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG-ASIKNLEAGSDGR 208
                        F +    +      L    E L + N V+ VKG A            
Sbjct: 66  EEMGIKAENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFV-----DANT 120

Query: 209 VAAVKLEDGSTIDADTIVIGIGAKPTVSP----------FERVGLN-SSVGGIQVDGQFR 257
           V  V  +   T      +I  G++P               E++G+  ++ G I+VD Q R
Sbjct: 121 VRVVNGDSAQTYTFKNAIIATGSRPIELVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCR 180

Query: 258 TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYL 311
           T +P IFAIGD+   P         + H   A    +   +A+    +   DY+
Sbjct: 181 TSVPNIFAIGDIVPGPA--------LAHK--ASYEGKVAAEAIAGHPSA-VDYV 223

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

 Score = 49.4 bits (116), Expect = 1e-07
 Identities = 34/187 (18%), Positives = 59/187 (31%), Gaps = 22/187 (11%)

Query: 133 AKKVVVVGGGYIGMEVAAA--AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV 190
            +KVVVVGGG  G   A         ++ T+I P         +  +     +L      
Sbjct: 2   GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHG 61

Query: 191 KFVKGASIKNL----EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP----------TVS 236
                A    +      G D     VK   G+    D  V+  G +            ++
Sbjct: 62  YDGLRAHGIQVVHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIA 121

Query: 237 PFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVA-AFPLKMYDRTARVEHVDHARQSAQH 295
               +  ++    + +     +   GI  IGD + A P+     +A        + +A  
Sbjct: 122 QIAGLTNDAGWCPVDIKTFESSIHKGIHVIGDASIANPMPKSGYSA----NSQGKVAAAA 177

Query: 296 CIKALLS 302
            +  LL 
Sbjct: 178 -VVVLLK 183

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 123

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 45.2 bits (106), Expect = 1e-06
 Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 5/121 (4%)

Query: 111 LPGVHYI-RDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 169
           LPGV    + +  +   ++  E  KK+VV+G GYIG+E+ +       + T++   +  +
Sbjct: 2   LPGVTIDEKKIVSSTGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASE-I 60

Query: 170 QRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDADTIV 226
                  + +++++  ++ G+KF     +  ++   DG    V+   G   + I+AD ++
Sbjct: 61  VPTMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVL 120

Query: 227 I 227
           +
Sbjct: 121 V 121

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (110), Expect = 1e-06
 Identities = 34/191 (17%), Positives = 50/191 (26%), Gaps = 53/191 (27%)

Query: 136 VVVVGGGYIGMEVAAAAVGWKLDTTII----------------------FPENHLLQRLF 173
            +V+GGG  G+  A  A        ++                         +       
Sbjct: 6   YLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDH 65

Query: 174 TPSLAQRYEQLYQQNGVKFVKGASIK------------------NLEAGSDGRVAAVKLE 215
                   E  +    +K  + A +                      A            
Sbjct: 66  ADYGFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEV 125

Query: 216 DGSTIDADTIVIGIGAKPTVSPFERV----GLN--------SSVGGIQVDGQFRTRMPGI 263
            G    A  I+I  G  P+  P ERV     L+           G I VD    T + GI
Sbjct: 126 SGKKYTAPHILIATGGMPST-PHERVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGI 184

Query: 264 FAIGDVAAFPL 274
           +A+GDV    L
Sbjct: 185 YAVGDVCGKAL 195

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 46.0 bits (108), Expect = 2e-06
 Identities = 40/191 (20%), Positives = 67/191 (35%), Gaps = 53/191 (27%)

Query: 136 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL------------LQRLFTPSLAQRYEQ 183
           VV++GGG  G   A  A      TT I     L               L +  +    + 
Sbjct: 6   VVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKH 65

Query: 184 LYQQNGVKFV------------KGASIKNLEAGSDGRVAAVKLE---------------- 215
            +  +GVK              K  ++ NL  G +G     K+                 
Sbjct: 66  SFANHGVKVSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISV 125

Query: 216 -----DGSTIDADTIVIGIGAKPT-VSPF------ERVGLN-SSVGGIQVDGQFRTRMPG 262
                + + +    I+I  G+     +PF      +++G+    +G I V+ +F T + G
Sbjct: 126 DTIEGENTVVKGKHIIIATGSDVKGRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVSG 185

Query: 263 IFAIGDVAAFP 273
           ++AIGDV   P
Sbjct: 186 VYAIGDVIPGP 196

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 44.4 bits (103), Expect = 6e-06
 Identities = 24/155 (15%), Positives = 47/155 (30%), Gaps = 15/155 (9%)

Query: 136 VVVVGGGYIGMEVAAAAVGWKLDTTIIF--PENHLLQRLFTPSLAQRYEQLYQQNGVKFV 193
           V++VG G  G   A  +    + T ++       +L  +   +     +   Q+      
Sbjct: 4   VLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALK 63

Query: 194 KGASIKNLEAGSDGRVAAVKLEDG-------------STIDADTIVIGIGAKPTVSPFER 240
                 +++       + +                         IV      P  +  E 
Sbjct: 64  VHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLEG 123

Query: 241 VGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 275
               + +G I +D +  T + G+FA GD    P K
Sbjct: 124 AVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYK 158

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 44.2 bits (103), Expect = 1e-05
 Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 12/104 (11%)

Query: 183 QLYQQNGVKFVKG-ASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--- 238
                 G+ F +G  ++++         A        T+D + I++  G+ P        
Sbjct: 112 MFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQHLGIEVP 171

Query: 239 -------ERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDVAAFPL 274
                  E+ G+  +  G I+VD   +T +  I+AIGDV    +
Sbjct: 172 RSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRVM 215

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 162

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 43.0 bits (100), Expect = 1e-05
 Identities = 26/166 (15%), Positives = 42/166 (25%), Gaps = 45/166 (27%)

Query: 102 RFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAV-------- 153
           R P   G   P V    DV     L        KV ++G G IG + A            
Sbjct: 3   RTPPIDGIDHPKVLSYLDV-----LRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQ 57

Query: 154 -----------------------------GWKLDTTIIFPENHLLQRLFTPSLAQRYEQL 184
                                               ++  +     +    +    +   
Sbjct: 58  NIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTT 117

Query: 185 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 230
               GVK + G S +  +   DG    +   +   +  D +VI  G
Sbjct: 118 LLSRGVKMIPGVSYQ--KIDDDGLHVVIN-GETQVLAVDNVVICAG 160

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 43.0 bits (100), Expect = 2e-05
 Identities = 27/167 (16%), Positives = 48/167 (28%), Gaps = 22/167 (13%)

Query: 131 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTII----------------FPENHLLQRLFT 174
               ++ +VG G      A  A   +L   +                   +         
Sbjct: 3   THNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPE 62

Query: 175 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 234
             L       +++   +F      + +              D   I AD +++ IGA   
Sbjct: 63  GILGVELTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAVAK 122

Query: 235 VSPFERVGLNSSV-----GGIQVD-GQFRTRMPGIFAIGDVAAFPLK 275
                   L+  V     G +    G  +T +PG+FA GDV     +
Sbjct: 123 GHEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYR 169

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.6 bits (99), Expect = 4e-05
 Identities = 6/84 (7%), Positives = 24/84 (28%)

Query: 190 VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGG 249
           +   K    ++L       ++    +          ++ I     +   + + +N +   
Sbjct: 198 LAGYKNDGTRDLSQKHGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHD 257

Query: 250 IQVDGQFRTRMPGIFAIGDVAAFP 273
           + +       +  ++  G   A  
Sbjct: 258 VVIHSGAYAGVDNMYFAGMEVAEL 281

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 41.5 bits (96), Expect = 7e-05
 Identities = 14/27 (51%), Positives = 19/27 (70%)

Query: 248 GGIQVDGQFRTRMPGIFAIGDVAAFPL 274
           G I+VD Q RT +P I+AIGD+   P+
Sbjct: 179 GFIEVDKQMRTNVPHIYAIGDIVGQPM 205

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (96), Expect = 8e-05
 Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 14/107 (13%)

Query: 181 YEQLYQQNGVKFVKG-ASI--KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP 237
            E L+++N V + KG  S   +     +        +++   +D   I++  G++ T   
Sbjct: 102 IELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFV 161

Query: 238 ----------FERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFP 273
                      E++GL     G + +D QF ++ P I  +GDV   P
Sbjct: 162 GRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGP 208

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 41.1 bits (95), Expect = 8e-05
 Identities = 29/183 (15%), Positives = 52/183 (28%), Gaps = 48/183 (26%)

Query: 136 VVVVGGGYIGMEVAAAAVGWKLDTTII-----------FPENHLLQRLFTPSLAQRYEQL 184
            + +GGG  G+     A  +     +I                         + +     
Sbjct: 5   YIAIGGGSGGIASINRAAMYGQKCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMY 64

Query: 185 YQQNGVKFV------------KGASIKNLEAGSDGRVAAVKLE----------------D 216
               G                + A I  +    +  +    ++                +
Sbjct: 65  GPDYGFDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEVN 124

Query: 217 GSTIDADTIVIGIGAKPTVSPF---ERVGLN------SSVGGIQVDGQFRTRMPGIFAIG 267
           G TI AD I+I  G +P+       + + L       +  G I VD    T + GI+A+G
Sbjct: 125 GETITADHILIATGGRPSHPREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVG 184

Query: 268 DVA 270
           D  
Sbjct: 185 DNT 187

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 39.6 bits (91), Expect = 3e-04
 Identities = 22/189 (11%), Positives = 52/189 (27%), Gaps = 50/189 (26%)

Query: 136 VVVVGGGYIGMEVAAAAVGWKLDTTII-----------FPENHLLQRLFTPSLAQRYEQL 184
           ++++GGG  G   A  A    + T ++                    +       +  + 
Sbjct: 8   LLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASRF 67

Query: 185 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-------------------------- 218
            + + +     +   ++      +   V                                
Sbjct: 68  TEPSPLGISVASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVE 127

Query: 219 ----TIDADTIVIGIGAKPTVSPFERVGLNSSV---------GGIQVDGQFRTRMPGIFA 265
                I  + +++  G+     P        ++           I +D + +T M  ++A
Sbjct: 128 VDGQRIQCEHLLLATGSSSVELPRRPRTKGFNLECLDLKMNGAAIAIDERCQTSMHNVWA 187

Query: 266 IGDVAAFPL 274
           IGDVA  P+
Sbjct: 188 IGDVAGEPM 196

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 9/26 (34%), Positives = 11/26 (42%)

Query: 248 GGIQVDGQFRTRMPGIFAIGDVAAFP 273
             + VD   RT   GI+A GD     
Sbjct: 182 NYLTVDRVSRTLATGIYAAGDCTGLL 207

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 34/197 (17%), Positives = 53/197 (26%), Gaps = 21/197 (10%)

Query: 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 193
            K+ ++G G   +  A+           IF +   +  L T  + Q        N    +
Sbjct: 5   AKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIEL 64

Query: 194 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV------SPFERVGLNSSV 247
                  +  G       + L            IGIG    +           +  N   
Sbjct: 65  MKDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNRWD 124

Query: 248 GGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHC------IKALL 301
                    +T  P +FA GD+          T     V+      Q        I+A  
Sbjct: 125 LPEVDPETMQTSEPWVFAGGDIVGMA-----NTT----VESVNDGKQASWYIHKYIQAQY 175

Query: 302 SAQTHTYDYLPYFYSRV 318
            A       LP FY+ V
Sbjct: 176 GASVSAKPELPLFYTPV 192

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 238

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 13/26 (50%), Positives = 16/26 (61%)

Query: 248 GGIQVDGQFRTRMPGIFAIGDVAAFP 273
           GG+QVD   RT +  I+AIGDV    
Sbjct: 188 GGVQVDEYSRTNVSNIYAIGDVTNRV 213

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} Length = 153

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 35.9 bits (82), Expect = 0.003
 Identities = 14/109 (12%), Positives = 33/109 (30%), Gaps = 12/109 (11%)

Query: 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIF-----PENHLLQRLFTPSLAQRYEQLYQQN 188
             V+V+G G    + A +A+        +           +      +  ++ E L   +
Sbjct: 46  GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEEKCEFLPFLS 105

Query: 189 GVKF------VKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 231
             K       +        E    G+    + +    + AD ++   G+
Sbjct: 106 PRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQI-VHLKADVVISAFGS 153

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 8/51 (15%), Positives = 15/51 (29%)

Query: 176 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 226
            L Q + +L    G  ++    I  +    D            T  A  ++
Sbjct: 237 ELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVI 287

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 36.6 bits (83), Expect = 0.003
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 248 GGIQVDGQFRTRMPGIFAIGDVAAFP 273
           G I VD    T +PG++AIGDV    
Sbjct: 179 GFIYVDDYCATSVPGVYAIGDVVRGA 204

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 15/129 (11%), Positives = 36/129 (27%), Gaps = 23/129 (17%)

Query: 190 VKFVKGASIKNLEAGSDGRVAAVKLE-DGSTIDADTIVIGI-------------GAKPTV 235
           V  +  +  ++    S   ++A   +        D +++               G    +
Sbjct: 252 VLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLL 311

Query: 236 SPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEH-VDHARQSAQ 294
           +    V  ++    +    +    +PG+F  G+              V   +     +A 
Sbjct: 312 NFIPEVYGHNYDSVLDAIDKMEKNLPGLFYAGNHR--------GGLSVGKALSSGCNAAD 363

Query: 295 HCIKALLSA 303
             I  L S 
Sbjct: 364 LVISYLESV 372

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 233

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

 Score = 36.3 bits (82), Expect = 0.004
 Identities = 14/161 (8%), Positives = 45/161 (27%), Gaps = 5/161 (3%)

Query: 26  YLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK 85
                +K    L       G G      ++ + +  +++ ++  + + + ++ +  +   
Sbjct: 77  LTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQLALGQKPMTADDVL 136

Query: 86  LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIG 145
                 +I+ATG +                   D+     +    +     ++    + G
Sbjct: 137 QYGADKVIIATGAS-ECTLWNELKARESEWAENDIKGIYLIG---DAEAPRLIADATFTG 192

Query: 146 MEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ 186
             VA           I +    +            ++  Y+
Sbjct: 193 HRVAREIEEANPQIAIPYKRETIAWGTPHMP-GGNFKIEYK 232

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 36.7 bits (83), Expect = 0.004
 Identities = 25/168 (14%), Positives = 46/168 (27%), Gaps = 19/168 (11%)

Query: 140 GGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIK 199
               +G   A  A           P+       F   L    + L    G     GA ++
Sbjct: 184 RSLILGAIRAQKAQRQAALPAGTAPKLSGALSTFDGGLQVLIDALAASLGDAAHVGARVE 243

Query: 200 NLEAGSDG-RVAAVKLEDGSTIDADTIVIGIGAKPT-----------VSPFERVGLNSSV 247
            L     G R+   +    + +    +V+   A  T            +    +     +
Sbjct: 244 GLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAHATAKLLRPLDDALAALVAGIYNLGHL 303

Query: 248 GGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH 295
             +        R+PG+  IG+        Y      + + +A Q A  
Sbjct: 304 ERVAAIDAALQRLPGLHLIGN-------AYKGVGLNDCIRNAAQLADA 344

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	414
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.93
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.91
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.9
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	99.89
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.89
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.88
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.87
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.84
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	99.81
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.81
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.8
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.77
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.76
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.76
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.74
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.74
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.74
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.74
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.73
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.73
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.73
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	99.71
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.7
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	99.7
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	99.7
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.7
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	99.69
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.69
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.67
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	99.67
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.66
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.65
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.64
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	99.62
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.62
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	99.62
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.55
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.53
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	99.45
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	99.42
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.41
d1q1ra3	103	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.41
d1d7ya3	97	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.37
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.35
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	99.33
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.3
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.29
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.21
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	99.12
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	99.1
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.1
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.07
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.05
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.03
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	98.93
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.93
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.89
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	98.88
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	98.83
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.82
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.82
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	98.79
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	98.7
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	98.67
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.65
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.65
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	98.65
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	98.63
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	98.58
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	98.57
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.56
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	98.55
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.47
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	98.43
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.42
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.36
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.36
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.34
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.31
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.25
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	98.18
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.15
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.14
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.06
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	98.0
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	97.93
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	97.92
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	97.92
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	97.84
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	97.82
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	97.62
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	97.51
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	97.49
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	97.34
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.32
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	97.2
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	97.16
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.16
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	97.15
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	97.1
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	97.09
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.09
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.02
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	97.01
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.01
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	96.94
d1fcda2	141	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	96.83
d1v59a3	123	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.66
d1m6ia3	131	Apoptosis-inducing factor (AIF) {Human (Homo sapie	96.64
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	96.62
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	96.5
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	96.49
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	96.48
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.39
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	96.37
d3lada3	124	Dihydrolipoamide dehydrogenase {Azotobacter vinela	96.31
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	96.23
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.21
d1xdia2	118	Dihydrolipoamide dehydrogenase {Mycobacterium tube	96.14
d1dxla3	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	96.03
d1lvla3	123	Dihydrolipoamide dehydrogenase {Pseudomonas putida	95.91
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	95.88
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	95.84
d1ojta3	128	Dihydrolipoamide dehydrogenase {Neisseria meningit	95.79
d1ebda3	115	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.72
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	95.61
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	95.47
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	95.42
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	95.34
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	95.2
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	95.14
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	95.08
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	95.06
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.03
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	94.91
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	94.89
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	94.88
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	94.76
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	94.65
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	94.56
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	94.53
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	94.3
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	94.25
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	94.24
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	94.19
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	93.99
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	93.97
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	93.5
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	93.29
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	93.1
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	92.91
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	92.9
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	92.82
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	92.72
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	92.44
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	92.39
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	92.24
d1onfa3	119	Glutathione reductase {Plasmodium falciparum [TaxI	92.22
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	92.15
d3grsa3	115	Glutathione reductase {Human (Homo sapiens) [TaxId	92.15
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	92.12
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	91.87
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	91.76
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	91.75
d1fcda2	141	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	91.54
d1feca3	128	Trypanothione reductase {Crithidia fasciculata [Ta	91.53
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	91.5
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	91.15
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	91.06
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	90.95
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	90.93
d1gesa3	115	Glutathione reductase {Escherichia coli [TaxId: 56	90.92
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	90.87
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	90.83
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	90.81
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	90.59
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	90.45
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	90.19
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	89.74
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	89.72
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	89.67
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	89.65
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	89.52
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	89.31
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	89.31
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	88.99
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	88.73
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	88.51
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	88.3
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	88.28
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	88.17
d1h6va3	133	Mammalian thioredoxin reductase {Rat (Rattus norve	88.14
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	88.08
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	88.08
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	87.91
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	87.77
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	87.41
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	87.29
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	86.88
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	86.76
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	86.49
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	86.32
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	86.31
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	86.29
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	86.26
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	86.23
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	86.0
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	85.97
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	85.72
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	85.37
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	85.36
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	85.32
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	85.19
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	84.85
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	84.83
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	84.53
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	84.4
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	84.32
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	84.09
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	83.71
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	83.69
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	83.47
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	83.27
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	83.25
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	83.04
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	83.01
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	82.82
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	82.78
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	82.72
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	82.6
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	82.49
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	82.47
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	82.25
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	82.19
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	82.03
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	81.94
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	81.9
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	81.87
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	81.66
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	81.45
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	81.23
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	81.08
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	81.0
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	80.91
d1mo9a3	140	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	80.35

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.93  E-value=7.7e-26  Score=196.29  Aligned_cols=164  Identities=24%  Similarity=0.353  Sum_probs=132.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHH----------HHHHhCCcEEEcCceEEEEEe
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE----------QLYQQNGVKFVKGASIKNLEA  203 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~----------~~l~~~gv~i~~~~~v~~i~~  203 (414)
                      .+|+|||||++|+|+|..|+++|.+++++.+.++.+.....+.++..+.          ......+|+++++..++++..
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~~   83 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFDP   83 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTTHHHHCCGGGSBCCGGGSTTCEEEETCCEEEEET
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccchhhHHHhhhhhhhhhhhhHHHHHhhcCCeEEEEecccccccc
Confidence            4699999999999999999999988887776655544322222222221          223456899999999999974


Q ss_pred             cCCCcEEEEEeCCCcEEecCEEEEccCCcCCCh-----hhhhcCCcccCCCEEEcCCCCCCCCcEEEEccccccCCccCC
Q 014997          204 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS-----PFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYD  278 (414)
Q Consensus       204 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~-----~l~~~gl~~~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~  278 (414)
                      .  ..  .+.+++|+++++|.+++++|..|+..     +....++..+ ++|.||+++||+.|+|||+|||+..++...|
T Consensus        84 ~--~~--~~~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~gl~~~-~~I~vd~~~~ts~~~IyA~GD~a~~~~~~~g  158 (183)
T d1d7ya1          84 Q--AH--TVALSDGRTLPYGTLVLATGAAPRAVLANDALARAAGLACD-DGIFVDAYGRTTCPDVYALGDVTRQRNPLSG  158 (183)
T ss_dssp             T--TT--EEEETTSCEEECSEEEECCCEEECCEEECCHHHHHTTCCBS-SSEECCTTCBCSSTTEEECGGGEEEECTTTC
T ss_pred             c--cc--eeEecCCcEeeeeeEEEEEEEEcccccccccccceeeEeeC-CcEEeccceeccccccchhhhhhccceeeCC
Confidence            3  22  56789999999999999999999753     4556777765 6799999999999999999999999888888


Q ss_pred             cccccccHHHHHHHHHHHHHHHhc
Q 014997          279 RTARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       279 ~~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                      ...++++|.+|.+||+.+|+||+.
T Consensus       159 ~~~~~~~~~~A~~qg~~aa~nil~  182 (183)
T d1d7ya1         159 RFERIETWSNAQNQGIAVARHLVD  182 (183)
T ss_dssp             SEEECCCHHHHHHHHHHHHHHHHC
T ss_pred             ceechhHHHHHHHHHHHHHHHHcC
Confidence            888889999999999999999984

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.91  E-value=1.2e-23  Score=182.24  Aligned_cols=166  Identities=27%  Similarity=0.431  Sum_probs=133.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccccc--------------CHHHHHHHHHHHHhCCcEEEcCce
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLF--------------TPSLAQRYEQLYQQNGVKFVKGAS  197 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~--------------~~~~~~~~~~~l~~~gv~i~~~~~  197 (414)
                      ..++|+|||||++|+|+|..|+++|.+++++.+.++......              ...............++.+..+..
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQ   81 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchhhhHHHHHHHHhhhhhhhhhhhhhhhhcccceeeeccce
Confidence            468999999999999999999999999888876654321111              111112223456777889998888


Q ss_pred             EEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcC---CChhhhhcCCcccCCCEEEcCCCCCCCCcEEEEccccccCC
Q 014997          198 IKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP---TVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPL  274 (414)
Q Consensus       198 v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p---~~~~l~~~gl~~~~g~i~vd~~~~t~~~~IyA~GD~a~~~~  274 (414)
                      +..+... ..   .+.+.++.++++|.+++++|.+|   +..+++..++..+ +++.||++|||+.|+|||+|||+..+.
T Consensus        82 ~~~~~~~-~~---~v~~~~~~~i~~d~~i~~~G~~~~~~~~~~~~~~~~~~~-~~i~Vd~~~~ts~~~vya~GD~~~~~~  156 (185)
T d1q1ra1          82 VTAINRD-RQ---QVILSDGRALDYDRLVLATGGRPLIPNCELASAAGLQVD-NGIVINEHMQTSDPLIMAVGDCARFHS  156 (185)
T ss_dssp             EEEEETT-TT---EEEETTSCEEECSEEEECCCEEEEEECCHHHHHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEEEE
T ss_pred             eeeeccc-cc---EEEeeceeEEEeeeeeeeeecccCCCCchhHHhCCcccc-CccccCCccccchhhhhcchhhhcccc
Confidence            8888643 22   56788899999999999999876   5566777787765 789999999999999999999999988


Q ss_pred             ccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997          275 KMYDRTARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       275 ~~~~~~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                      ...+.+.++++|++|.+||+.||+||+|
T Consensus       157 ~~~~~~~~~~~a~~A~~~g~~aa~~i~G  184 (185)
T d1q1ra1         157 QLYDRWVRIESVPNALEQARKIAAILCG  184 (185)
T ss_dssp             TTTTEEEECCSHHHHHHHHHHHHHHHTT
T ss_pred             ccCCcccchhhHHHHHHHHHHHHHHccC
Confidence            8888888889999999999999999986

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.90  E-value=3.8e-23  Score=166.08  Aligned_cols=120  Identities=32%  Similarity=0.529  Sum_probs=112.1

Q ss_pred             CCCCCCCCCCEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHH
Q 014997          104 PEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQ  183 (414)
Q Consensus       104 ~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~  183 (414)
                      |++||.+.+ ++++++++|+.++.+.+.++++++|||||++|+|+|..|+++|++||++++.++++++.+++++++.+.+
T Consensus         2 P~ipG~~~~-v~~lrtl~Da~~l~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~   80 (121)
T d1d7ya2           2 PTLQGATMP-VHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVAR   80 (121)
T ss_dssp             GGGTTCSSC-EEECCSHHHHHHHHHHCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHH
T ss_pred             ccCCCCCCC-EEEeCCHHHHHHHHHhhhcCCeEEEECcchhHHHHHHHhhcccceEEEEeeccccccccCCHHHHHHHHH
Confidence            566787765 9999999999999999999999999999999999999999999999999999999998899999999999


Q ss_pred             HHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccC
Q 014997          184 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG  230 (414)
Q Consensus       184 ~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G  230 (414)
                      .++++||++++++.|+++..+      .+.++||++++||+||+|+|
T Consensus        81 ~l~~~GV~i~~~~~v~~~~~~------~v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          81 YHAAQGVDLRFERSVTGSVDG------VVLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             HHHTTTCEEEESCCEEEEETT------EEEETTSCEEECSEEEECSC
T ss_pred             HHHHCCcEEEeCCEEEEEeCC------EEEECCCCEEECCEEEEeeC
Confidence            999999999999999998743      67899999999999999998

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.89  E-value=5.5e-23  Score=175.16  Aligned_cols=153  Identities=26%  Similarity=0.382  Sum_probs=121.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHH-------------HHHHHHHHhCCcEEEcCceEEE
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLA-------------QRYEQLYQQNGVKFVKGASIKN  200 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~-------------~~~~~~l~~~gv~i~~~~~v~~  200 (414)
                      .||+|||||++|+|+|..|++ +.+||++++.+.+..  ..+.+.             ....+.+++.++++++++.++.
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~   77 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYY--SKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKL   77 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCC--CSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEE
T ss_pred             CeEEEECCcHHHHHHHHHHHc-CCCEEEEeccccccc--cccchhhhhhhhhhhhhhhHHHHHHHHhccceeeeeccccc
Confidence            479999999999999999975 679999998764321  111221             2224567788999999999999


Q ss_pred             EEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhcCCcccCCCEEEcCCCCCCCCcEEEEccccccCCccCCcc
Q 014997          201 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRT  280 (414)
Q Consensus       201 i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~  280 (414)
                      ++..  .   .+.+.++.+++||.+++++|..|+ .+++..|++.+ ++|.||+++||+.|+|||+|||+..+...    
T Consensus        78 i~~~--~---~~~~~~~~~i~~D~li~a~G~~~~-~~~~~~gl~~~-~~i~v~~~~~t~~~~i~aiGD~~~~~~~~----  146 (167)
T d1xhca1          78 IDRG--R---KVVITEKGEVPYDTLVLATGAPNV-DLARRSGIHTG-RGILIDDNFRTSAKDVYAIGDCAEYSGII----  146 (167)
T ss_dssp             EETT--T---TEEEESSCEEECSEEEECCCEECC-HHHHHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEBTTBC----
T ss_pred             cccc--c---ccccccccccccceeEEEEEecCC-chhhhcCceeC-CceeeccccEecCCCeEEeeecccCCCeE----
Confidence            9643  2   234567778999999999999775 78888999886 47999999999999999999999876543    


Q ss_pred             cccccHHHHHHHHHHHHHHHhc
Q 014997          281 ARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       281 ~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                        +..+..|.+||+.+|+||+|
T Consensus       147 --~~~~~~a~~~a~~~a~~i~G  166 (167)
T d1xhca1         147 --AGTAKAAMEQARVLADILKG  166 (167)
T ss_dssp             --CCSHHHHHHHHHHHHHHHTT
T ss_pred             --EChHHHHHHHHHHHHHHcCC
Confidence              33677899999999999986

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.89  E-value=8.3e-23  Score=179.22  Aligned_cols=164  Identities=21%  Similarity=0.328  Sum_probs=125.3

Q ss_pred             eEEEECCChHHHHHHHHHHhCC--CcEEEEeeCCcccccccCH--------------HHHHHHHHHHHhCCcEEEcCceE
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQRLFTP--------------SLAQRYEQLYQQNGVKFVKGASI  198 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l~~~~~~--------------~~~~~~~~~l~~~gv~i~~~~~v  198 (414)
                      ||+|||||++|+|+|..|++++  .+|+++++.+.+.  ..+.              .+.....+.++++||+++++++|
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~V   79 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFIS--FLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEI   79 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSS--BCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEE
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCccc--ccccCcchhhcccccchHHHHHhhHHHHHHCCcEEEEeece
Confidence            6999999999999999999874  5789999876541  1111              11222345688999999999999


Q ss_pred             EEEEecCCCcEEEEEeCCCc--EEecCEEEEccCCcC--------CChhhhhcCCc-ccCCCEEEcCCCCCCCCcEEEEc
Q 014997          199 KNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKP--------TVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIG  267 (414)
Q Consensus       199 ~~i~~~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p--------~~~~l~~~gl~-~~~g~i~vd~~~~t~~~~IyA~G  267 (414)
                      ++++.+ +..+..-.+.+|+  ++++|.+|+++|..|        +..+++. ++. .++|+|.||+++||+.|+|||+|
T Consensus        80 ~~i~~~-~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~~~g~~~~~~~~~~-~~~~~~~G~i~vd~~~~T~~~~IyA~G  157 (198)
T d1nhpa1          80 TAIQPK-EHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGVRPNTAWLKG-TLELHPNGLIKTDEYMRTSEPDVFAVG  157 (198)
T ss_dssp             EEEETT-TTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCEEESCGGGTT-TSCBCTTSCBCCCTTCBCSSTTEEECG
T ss_pred             eeEeec-cccceeeecccccccccccceeeEeecceeecccccccccccccc-cceeccCCceecCCcccccccceEEec
Confidence            999854 3333222244553  589999999998764        4555555 343 34688999999999999999999


Q ss_pred             cccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997          268 DVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       268 D~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                      ||+..+....+...+++++..|.++|+.+|+||.+
T Consensus       158 D~a~~~~~~~~~~~~~~~a~~A~~~g~~aa~ni~~  192 (198)
T d1nhpa1         158 DATLIKYNPADTEVNIALATNARKQGRFAVKNLEE  192 (198)
T ss_dssp             GGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSSS
T ss_pred             ceeecccccCCCcccccHHHHHHHHHHHHHHhhCC
Confidence            99998776666666778899999999999999975

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.8e-23  Score=185.71  Aligned_cols=164  Identities=27%  Similarity=0.411  Sum_probs=127.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCC--cEEEEeeCCcc------ccccc---------------------------CHH--
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHL------LQRLF---------------------------TPS--  176 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~--~Vtlv~~~~~~------l~~~~---------------------------~~~--  176 (414)
                      .+++|||+|++|+++|..|++++.  +|+++.+.+.+      ++..+                           +++  
T Consensus         5 ~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (213)
T d1m6ia1           5 VPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFY   84 (213)
T ss_dssp             EEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGGGS
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCCccccccceecccccCchhhhhhhhhhcccchhhhhcCChhhh
Confidence            568999999999999999998764  58999875432      10000                           000  


Q ss_pred             HHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC-ChhhhhcCCccc--CCCEEEc
Q 014997          177 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT-VSPFERVGLNSS--VGGIQVD  253 (414)
Q Consensus       177 ~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~-~~~l~~~gl~~~--~g~i~vd  253 (414)
                      ........+++.||+++++++|++|+.++ .   .|.++||++++||.+|+|+|..|+ .++....+++.+  .++|.||
T Consensus        85 ~~~~~~~~~~~~gI~~~~g~~V~~id~~~-~---~V~l~dG~~i~~d~lViAtG~~~~~~~l~~~~gl~~~~~~~~i~vd  160 (213)
T d1m6ia1          85 VSAQDLPHIENGGVAVLTGKKVVQLDVRD-N---MVKLNDGSQITYEKCLIATGGTEPNVELAKTGGLEIDSDFGGFRVN  160 (213)
T ss_dssp             BCTTTTTTSTTCEEEEEETCCEEEEEGGG-T---EEEETTSCEEEEEEEEECCCEEEECCTTHHHHTCCBCTTTCSEECC
T ss_pred             hhhhhHHHHHHCCeEEEeCCEEEEeeccC-c---eeeeccceeeccceEEEeeeeecchhhhhhccchhhhhhhhhhhhh
Confidence            00111233567899999999999997542 2   678999999999999999997654 456677788763  4789999


Q ss_pred             CCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 014997          254 GQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA  303 (414)
Q Consensus       254 ~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~  303 (414)
                      ++|||+ |+|||+|||+.++....+. .++++|++|..||+.||+||++.
T Consensus       161 ~~l~~~-~~VyA~GD~a~~~~~~~g~-~~i~~~~~A~~~gr~aa~ni~g~  208 (213)
T d1m6ia1         161 AELQAR-SNIWVAGDAACFYDIKLGR-RRVEHHDHAVVSGRLAGENMTGA  208 (213)
T ss_dssp             TTCEEE-TTEEECGGGEEEEETTTEE-ECCCCHHHHHHHHHHHHHHHTSC
T ss_pred             HhcCcC-CceEEeeeeeeeccccCCc-EEeeEhHHHHHHHHHHHHHhcCC
Confidence            999998 9999999999988766554 46899999999999999999974

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.87  E-value=1.7e-21  Score=159.13  Aligned_cols=120  Identities=33%  Similarity=0.617  Sum_probs=112.4

Q ss_pred             CCCEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCc
Q 014997          111 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV  190 (414)
Q Consensus       111 ~~gv~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv  190 (414)
                      .++++++++++|+..+++.+..+++++|||||++|+|+|..|+++|.+||++++.++++++.+++.+++.+++.++++||
T Consensus        13 ~~~v~~lr~~~d~~~l~~~~~~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~~~~~~~~~~~~~~~~~GV   92 (133)
T d1q1ra2          13 ANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGV   92 (133)
T ss_dssp             STTEEESSSHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTC
T ss_pred             cCCeeEeCCHHHHHHHHHhhccCCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccccccchhhhhhhhhccccccc
Confidence            56899999999999999988889999999999999999999999999999999999999988999999999999999999


Q ss_pred             EEEcCceEEEEEecC-CCcEEEEEeCCCcEEecCEEEEccC
Q 014997          191 KFVKGASIKNLEAGS-DGRVAAVKLEDGSTIDADTIVIGIG  230 (414)
Q Consensus       191 ~i~~~~~v~~i~~~~-~~~~~~v~~~~g~~i~~D~vi~a~G  230 (414)
                      ++++++.+++++... ++.+..+.+++|++++||.||+|+|
T Consensus        93 ~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2          93 DIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             EEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             EEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence            999999999997653 4567789999999999999999998

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.84  E-value=1.2e-20  Score=151.89  Aligned_cols=121  Identities=26%  Similarity=0.350  Sum_probs=108.5

Q ss_pred             CCCCCCCCEEEecCHHHHHHHHHhhc--CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHH
Q 014997          106 KIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQ  183 (414)
Q Consensus       106 ~~g~~~~gv~~~~~~~~~~~~~~~~~--~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~  183 (414)
                      +||.+.++++++++++++.++.+.+.  ++++++|||||++|+|+|..|+++|++||++++.++++++.+++++++.+.+
T Consensus         1 IPG~d~~~v~~~~~~~da~~i~~~~~~~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~~d~~~~~~~~~   80 (123)
T d1nhpa2           1 IPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTE   80 (123)
T ss_dssp             STTTTSBSEECCCHHHHHHHHHHHHTCTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHH
T ss_pred             CcCCCCCCeEEeCCHHHHHHHHHHhhccCCCEEEEECChHHHHHHHHHhhccceEEEEEEecCcccccccchhhHHHHHH
Confidence            36778899999999999999988764  5689999999999999999999999999999999999998899999999999


Q ss_pred             HHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEcc
Q 014997          184 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI  229 (414)
Q Consensus       184 ~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~  229 (414)
                      .++++||++++++.+++++.+  +.+..+ +.||++++||+||+|+
T Consensus        81 ~l~~~gv~~~~~~~v~~i~~~--~~~~~v-~~dg~~i~~D~vi~aI  123 (123)
T d1nhpa2          81 EMEANNITIATGETVERYEGD--GRVQKV-VTDKNAYDADLVVVAV  123 (123)
T ss_dssp             HHHTTTEEEEESCCEEEEECS--SBCCEE-EESSCEEECSEEEECS
T ss_pred             HhhcCCeEEEeCceEEEEEcC--CCEEEE-EeCCCEEECCEEEEEC
Confidence            999999999999999999853  444344 6788899999999984

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.81  E-value=7.3e-20  Score=147.16  Aligned_cols=120  Identities=23%  Similarity=0.421  Sum_probs=106.1

Q ss_pred             CCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHH
Q 014997          100 ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQ  179 (414)
Q Consensus       100 ~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~  179 (414)
                      |+ .|++||  .+.+++++++.+++.+.+.+..+++++|||||++|+|+|..|+++|++||++++.+++++  +++++++
T Consensus         2 ~r-~p~ipG--~e~~~t~~~~~d~~~l~~~~~~~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~--~d~~~~~   76 (122)
T d1xhca2           2 AR-EPQIKG--KEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG--LDEELSN   76 (122)
T ss_dssp             EC-CCCSBT--GGGEECCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT--CCHHHHH
T ss_pred             CC-CcCCCC--ccceEccCCHHHHHHHHHHhhcCCcEEEECCcHHHHHHHHHhhcccceEEEEeccccccC--CCHHHHH
Confidence            44 356677  357899999999999998888889999999999999999999999999999999999885  8999999


Q ss_pred             HHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCC
Q 014997          180 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  231 (414)
Q Consensus       180 ~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~  231 (414)
                      .+.+.|+++||++++++++++++.+      .+ +.+++.+++|.||+|+|.
T Consensus        77 ~~~~~l~~~GV~~~~~~~v~~~~~~------~v-~~~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2          77 MIKDMLEETGVKFFLNSELLEANEE------GV-LTNSGFIEGKVKICAIGI  121 (122)
T ss_dssp             HHHHHHHHTTEEEECSCCEEEECSS------EE-EETTEEEECSCEEEECCE
T ss_pred             HHHHHHHHCCcEEEeCCEEEEEeCC------EE-EeCCCEEECCEEEEEEEe
Confidence            9999999999999999999999642      23 456778999999999995

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.6e-19  Score=148.24  Aligned_cols=118  Identities=24%  Similarity=0.471  Sum_probs=107.5

Q ss_pred             CCEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHH----hCCCcEEEEeeCCcccccccCHHHHHHHHHHHHh
Q 014997          112 PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAV----GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ  187 (414)
Q Consensus       112 ~gv~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~----~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~  187 (414)
                      +.++.+++++|+.++.+.+...++++|||||++|+|+|..|+    ..|.+|+++++.++++++.+++++++.+.+.+++
T Consensus        16 ~~~~~~r~~~d~~~l~~~~~~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~~~~~~~~~~~~l~~   95 (137)
T d1m6ia2          16 SRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRR   95 (137)
T ss_dssp             HTEEECCSHHHHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHT
T ss_pred             CcEEEEcCHHHHHHHHHHhhcCCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcccCCHHHHHHHHHHHHh
Confidence            468899999999999988888999999999999999999985    4689999999999999888999999999999999


Q ss_pred             CCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCC
Q 014997          188 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  231 (414)
Q Consensus       188 ~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~  231 (414)
                      +||++++++.|++++.+ ++. ..+.+++|++++||+||+|+|.
T Consensus        96 ~GV~~~~~~~V~~i~~~-~~~-~~v~l~~G~~i~aD~Vi~A~Gv  137 (137)
T d1m6ia2          96 EGVKVMPNAIVQSVGVS-SGK-LLIKLKDGRKVETDHIVAAVGL  137 (137)
T ss_dssp             TTCEEECSCCEEEEEEE-TTE-EEEEETTSCEEEESEEEECCCE
T ss_pred             CCcEEEeCCEEEEEEec-CCE-EEEEECCCCEEECCEEEEeecC
Confidence            99999999999999865 333 3689999999999999999994

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=2.3e-19  Score=142.79  Aligned_cols=114  Identities=27%  Similarity=0.430  Sum_probs=97.4

Q ss_pred             CCEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcE
Q 014997          112 PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK  191 (414)
Q Consensus       112 ~gv~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~  191 (414)
                      ||+.+..+..++.   ..-..+++++|||||++|+|+|..|+++|.+||++++.+++++ .+++++++.+.+.++++||+
T Consensus         3 PG~e~~~t~~~~~---~l~~~p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~-~~d~~~~~~~~~~l~~~GV~   78 (116)
T d1gesa2           3 PGVEYGIDSDGFF---ALPALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP-SFDPMISETLVEVMNAEGPQ   78 (116)
T ss_dssp             TTGGGSBCHHHHH---HCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHHSCE
T ss_pred             CCccccCCHHHHh---ChhhCCCEEEEECCChhhHHHHHHhhccccEEEEEeecchhhh-hcchhhHHHHHHHHHHCCCE
Confidence            3433333444443   3334679999999999999999999999999999999999997 58999999999999999999


Q ss_pred             EEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccC
Q 014997          192 FVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG  230 (414)
Q Consensus       192 i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G  230 (414)
                      +++++.++++..++++.+ .+.+++|+++++|.||+|+|
T Consensus        79 ~~~~~~v~~i~~~~~~~~-~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          79 LHTNAIPKAVVKNTDGSL-TLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             EECSCCEEEEEECTTSCE-EEEETTSCEEEESEEEECSC
T ss_pred             EEeCCEEEEEEEcCCcEE-EEEECCCCEEEcCEEEEecC
Confidence            999999999987766655 58899999999999999998

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.77  E-value=1.9e-18  Score=153.32  Aligned_cols=156  Identities=28%  Similarity=0.347  Sum_probs=113.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc------------------------------c----ccccCH----
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL------------------------------L----QRLFTP----  175 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~------------------------------l----~~~~~~----  175 (414)
                      ..++|||+|+.|+++|..+++.|.+|+++++...-                              .    ...+..    
T Consensus         4 ~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (223)
T d1ebda1           4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFAKVQ   83 (223)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEecCCCCcceeccccccccccccccchhhhhhhhhhhcccchhheeeHHHHh
Confidence            46899999999999999999999999999875310                              0    000110    


Q ss_pred             --------HHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEcc--------CCcCCChh--
Q 014997          176 --------SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI--------GAKPTVSP--  237 (414)
Q Consensus       176 --------~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~--------G~~p~~~~--  237 (414)
                              .+...+...++..||+++.+..  .+..  ..........++..+.++.+|+++        |.+||++.  
T Consensus        84 ~~~~~~v~~l~~~~~~~~~~~~V~~i~G~a--~f~~--~~~~~v~~~~~~~~~~~~~iiIa~g~~p~~~~G~~p~~~~l~  159 (223)
T d1ebda1          84 EWKASVVKKLTGGVEGLLKGNKVEIVKGEA--YFVD--ANTVRVVNGDSAQTYTFKNAIIATGSRPIELVGRRPNTDELG  159 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCEEEESEE--EEEE--TTEEEEEETTEEEEEECSEEEECCCEEECCBSCEEESCSSSS
T ss_pred             hHHHHHHHHHHhhHHHhhhccceeeeccEE--EEcc--CcccceeccccceEEecccEEEEcCCCccccccceecCCCCC
Confidence                    1223344556778999987742  3432  222222233344679999999985        88898875  


Q ss_pred             hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 014997          238 FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA  303 (414)
Q Consensus       238 l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~  303 (414)
                      ++++|++.+ +|+|.||++||||.|+|||+|||+..+.          ....|..+|+.||.+|++.
T Consensus       160 l~~~gv~~~~~G~I~vd~~~~T~~~gvyA~GDv~~~~~----------~~~~A~~~g~~aa~~i~g~  216 (223)
T d1ebda1         160 LEQIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIVPGPA----------LAHKASYEGKVAAEAIAGH  216 (223)
T ss_dssp             TTTTTCCBCTTSCBCCCTTCBCSSTTEEECGGGSSSCC----------CHHHHHHHHHHHHHHHTSC
T ss_pred             hHhcCceECCCCCEeECCCCCCCCCCEEEEeccCCCcc----------cHHHHHHHHHHHHHHHcCC
Confidence            578899875 6789999999999999999999987653          3455999999999999974

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.76  E-value=2.9e-18  Score=136.34  Aligned_cols=98  Identities=24%  Similarity=0.425  Sum_probs=89.3

Q ss_pred             hcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcE
Q 014997          130 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV  209 (414)
Q Consensus       130 ~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~  209 (414)
                      ++.+++++|||||++|+|+|..|+++|.+||++++.+++++ .+++++++.+.+.++++||++++++.+++++..+++.+
T Consensus        19 l~~p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~-~~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~   97 (117)
T d1onfa2          19 IKESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR-KFDESVINVLENDMKKNNINIVTFADVVEIKKVSDKNL   97 (117)
T ss_dssp             CCCCSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCT-TSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCE
T ss_pred             cCCCCEEEEECCchHHHHHHHHHHhccccceeeehhccccc-cccHHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCCeE
Confidence            34689999999999999999999999999999999999996 58999999999999999999999999999987766654


Q ss_pred             EEEEeCCCcEE-ecCEEEEcc
Q 014997          210 AAVKLEDGSTI-DADTIVIGI  229 (414)
Q Consensus       210 ~~v~~~~g~~i-~~D~vi~a~  229 (414)
                       .+.+++|+.+ .||.|++|+
T Consensus        98 -~v~~~~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2          98 -SIHLSDGRIYEHFDHVIYCV  117 (117)
T ss_dssp             -EEEETTSCEEEEESEEEECC
T ss_pred             -EEEECCCCEEEeCCEEEEeC
Confidence             6889999887 479999985

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.76  E-value=6e-18  Score=154.32  Aligned_cols=153  Identities=19%  Similarity=0.284  Sum_probs=106.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccc-------------------------------------cCH-
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-------------------------------------FTP-  175 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~-------------------------------------~~~-  175 (414)
                      -.++|||+|+.|+++|..++++|.+|+++++.+.+...+                                     ... 
T Consensus        43 yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c~n~GcvP~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (261)
T d1mo9a1          43 YDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGIK  122 (261)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTCCCCHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccccccccccccchHHHHhhHHhHHHHHHhhhhccccccccccccHH
Confidence            469999999999999999999999999999876542100                                     000 


Q ss_pred             HHHHH------------HHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChh------
Q 014997          176 SLAQR------------YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP------  237 (414)
Q Consensus       176 ~~~~~------------~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~------  237 (414)
                      .....            ..+.....++....+....-+.   +.   .+. .+|++++||.+++|+|.+|++..      
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d---~~---~v~-~~g~~i~ad~viiAtG~~P~~~~i~~~~~  195 (261)
T d1mo9a1         123 EVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVID---NH---TVE-AAGKVFKAKNLILAVGAGPGTLDVPEQPR  195 (261)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEE---TT---EEE-ETTEEEEBSCEEECCCEECCCCCSTCEEC
T ss_pred             HHHHHHHHHHHhhhhhHHHHhhhcccceeEeeeEEEEee---ec---ccc-cccceEeeeeeeeccCCCCCcCccccccc
Confidence            00000            0111233333333332222221   11   222 36778999999999999998653      


Q ss_pred             ----hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 014997          238 ----FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA  303 (414)
Q Consensus       238 ----l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~  303 (414)
                          .+..|++.+ +|.|.||++|||+.|+|||+|||+..+.          .+..|..+|+.||.||+|.
T Consensus       196 ~~~l~~~~Gl~~~~~G~I~Vn~~~~Ts~~~IyA~GDv~~~~~----------l~~~A~~~G~~aa~~i~G~  256 (261)
T d1mo9a1         196 SAELAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGPM----------EMFKARKSGCYAARNVMGE  256 (261)
T ss_dssp             CHHHHHHHTCCBCTTSCBCCCTTSBCSSTTEEECGGGGCSSC----------SHHHHHHHHHHHHHHHTTC
T ss_pred             ccccccceeeeeccCCEEEeCCCcccCCCCEEEEEEeCCCcc----------cHHHHHHHHHHHHHHHCCC
Confidence                345678875 6789999999999999999999987653          3456999999999999974

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.74  E-value=9.2e-18  Score=133.70  Aligned_cols=106  Identities=23%  Similarity=0.399  Sum_probs=92.0

Q ss_pred             HHHHHhhcCCCeEEEECCChHHHHHHHHHHh---CCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEE
Q 014997          124 DALISSLEKAKKVVVVGGGYIGMEVAAAAVG---WKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKN  200 (414)
Q Consensus       124 ~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~---~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~  200 (414)
                      +.+......+++++|||||++|+|+|..|.+   .|.+|+++++.+++++ .+++++++.+++.++++||++++++.+++
T Consensus         9 ~~~~~l~~~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~-~~d~~~~~~~~~~l~~~GI~v~~~~~v~~   87 (117)
T d1feca2           9 NEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILR-GFDSELRKQLTEQLRANGINVRTHENPAK   87 (117)
T ss_dssp             HHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSST-TSCHHHHHHHHHHHHHTTEEEEETCCEEE
T ss_pred             HHhhCccccCCeEEEECCChHHHHHHHHhHhhcccccccceecccccccc-cccchhhHHHHHHHhhCcEEEEcCCEEEE
Confidence            3333333457999999999999999987665   4889999999999997 58999999999999999999999999999


Q ss_pred             EEecCCCcEEEEEeCCCcEEecCEEEEccCC
Q 014997          201 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  231 (414)
Q Consensus       201 i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~  231 (414)
                      ++.++++. ..+.+++|++++||.||+|+|+
T Consensus        88 i~~~~~g~-~~v~~~~g~~i~~D~Vi~a~GR  117 (117)
T d1feca2          88 VTKNADGT-RHVVFESGAEADYDVVMLAIGR  117 (117)
T ss_dssp             EEECTTSC-EEEEETTSCEEEESEEEECSCE
T ss_pred             EEECCCCE-EEEEECCCCEEEcCEEEEecCC
Confidence            98766665 4689999999999999999994

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=1.1e-17  Score=134.07  Aligned_cols=104  Identities=17%  Similarity=0.359  Sum_probs=90.2

Q ss_pred             HHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEe
Q 014997          124 DALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  203 (414)
Q Consensus       124 ~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~  203 (414)
                      +.+......+++++|||+|++|+|+|..|+++|.+||++++.+++++ .+++++++.+++.++++||++++++++++++.
T Consensus        14 ~~~~~l~~~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~-~~d~ei~~~l~~~l~~~GV~i~~~~~v~~v~~   92 (122)
T d1v59a2          14 TGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA-SMDGEVAKATQKFLKKQGLDFKLSTKVISAKR   92 (122)
T ss_dssp             HHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSS-SSCHHHHHHHHHHHHHTTCEEECSEEEEEEEE
T ss_pred             HHhhCcccCCCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccch-hhhhhhHHHHHHHHHhccceEEeCCEEEEEEE
Confidence            33443344679999999999999999999999999999999999998 58999999999999999999999999999988


Q ss_pred             cCCCcEEEEEeCCC-----cEEecCEEEEc
Q 014997          204 GSDGRVAAVKLEDG-----STIDADTIVIG  228 (414)
Q Consensus       204 ~~~~~~~~v~~~~g-----~~i~~D~vi~a  228 (414)
                      .+++....+.+.++     ++++||.|++|
T Consensus        93 ~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          93 NDDKNVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             ETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             eCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence            77776666666543     47999999986

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.74  E-value=9.8e-18  Score=134.44  Aligned_cols=117  Identities=21%  Similarity=0.292  Sum_probs=97.2

Q ss_pred             CCCCCEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhC
Q 014997          109 GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN  188 (414)
Q Consensus       109 ~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~  188 (414)
                      .+.+|++...++.+..    ...++++++|||||++|+|+|..|+++|.+|+++++.+++++ .+++++++.+.+.++++
T Consensus         2 ~~~~gv~~~~~~~~~l----~~~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l~-~~d~~~~~~~~~~l~~~   76 (121)
T d1mo9a2           2 VNAKGVFDHATLVEEL----DYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKL-IKDNETRAYVLDRMKEQ   76 (121)
T ss_dssp             TTSBTEEEHHHHHHHC----CSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT-CCSHHHHHHHHHHHHHT
T ss_pred             CCCCCEEeHHHHHHHH----hhCCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhhc-ccccchhhhhhhhhhcc
Confidence            3467888654332211    123579999999999999999999999999999999999986 69999999999999999


Q ss_pred             CcEEEcCceEEEEEecCCCcEEEEE---eCCCcEEecCEEEEccC
Q 014997          189 GVKFVKGASIKNLEAGSDGRVAAVK---LEDGSTIDADTIVIGIG  230 (414)
Q Consensus       189 gv~i~~~~~v~~i~~~~~~~~~~v~---~~~g~~i~~D~vi~a~G  230 (414)
                      ||++++++++++++.++++.+..+.   ..++++++||.||+|+|
T Consensus        77 gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          77 GMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             TCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred             ccEEEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence            9999999999999987777654443   34567899999999998

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.74  E-value=7.8e-18  Score=149.29  Aligned_cols=158  Identities=26%  Similarity=0.439  Sum_probs=112.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc------------------------------------ccC---
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------LFT---  174 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------------~~~---  174 (414)
                      -.|+|||+|+.|+++|..++++|.+|+++++.+.+-..                                    ...   
T Consensus         4 yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~   83 (221)
T d1dxla1           4 NDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDLAA   83 (221)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEECHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeeecchhhhhhhhhHhHHHHHHHhhhhhhcCeecccceecHHH
Confidence            46999999999999999999999999999987653100                                    000   


Q ss_pred             ---------HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccC-----CcCCChh--h
Q 014997          175 ---------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG-----AKPTVSP--F  238 (414)
Q Consensus       175 ---------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G-----~~p~~~~--l  238 (414)
                               ..+...+...+++.+|+++.+..  .+... ..........++..+.+|.||+|+|     ..|+++.  +
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~~-~~~~~~~~~~~~~~~~a~~VIiATGs~~~gr~p~~~~l~l  160 (221)
T d1dxla1          84 MMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYG--KFVSP-SEISVDTIEGENTVVKGKHIIIATGSDVKGRTPFTSGLNL  160 (221)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCEEEESCE--EEEET-TEEEECCSSSCCEEEECSEEEECCCEEECCEEECCTTSCC
T ss_pred             HHHHHHHHHHHHhhHHHHhhhcCCeEEEEecc--ccccc-cccccccccccccccccceEEEeECCCccCccccCCCCCh
Confidence                     01223344556777888876542  22211 1100111223445799999999998     4677774  5


Q ss_pred             hhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCC
Q 014997          239 ERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ  304 (414)
Q Consensus       239 ~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~~  304 (414)
                      +++|++.+ +|+|.||+++||++|+|||+|||+..+.          .+..|..+|+.||.+|++..
T Consensus       161 ~~~gv~~~~~G~i~vd~~~~T~v~gi~A~GDv~~g~~----------l~~~A~~~g~~aa~~i~g~~  217 (221)
T d1dxla1         161 DKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGPM----------LAHKAEEDGVACVEYLAGKV  217 (221)
T ss_dssp             TTTTCCBCSSSCBCCCTTCBCSSTTEEECSTTSSSCC----------CHHHHHHHHHHHHHHHTTSC
T ss_pred             HhcCceEcCCCcEEeCCCcccCCCCEEEEeccCCCcc----------cHHHHHHHHHHHHHHHcCCC
Confidence            78899875 6889999999999999999999987553          35568899999999999743

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.73  E-value=3.6e-17  Score=130.45  Aligned_cols=105  Identities=19%  Similarity=0.364  Sum_probs=89.9

Q ss_pred             HHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEE
Q 014997          123 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE  202 (414)
Q Consensus       123 ~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~  202 (414)
                      +..+...-..+++++|||||++|||+|..|+++|++||++++.+++++ .+++++++.+++.+++.||++++++++++++
T Consensus        12 s~~~l~l~~~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~-~~d~ei~~~l~~~l~~~Gv~i~~~~~v~~i~   90 (119)
T d3lada2          12 STGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLP-AVDEQVAKEAQKILTKQGLKILLGARVTGTE   90 (119)
T ss_dssp             HHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-TSCHHHHHHHHHHHHHTTEEEEETCEEEEEE
T ss_pred             hhHhhCcccCCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCC-cccchhHHHHHHHHHhcCceeecCcEEEEEE
Confidence            444444445689999999999999999999999999999999999998 5899999999999999999999999999998


Q ss_pred             ecCCCcEEEEEeCCC---cEEecCEEEEccC
Q 014997          203 AGSDGRVAAVKLEDG---STIDADTIVIGIG  230 (414)
Q Consensus       203 ~~~~~~~~~v~~~~g---~~i~~D~vi~a~G  230 (414)
                      ..+++.  .+++.++   +++.||.|++|+|
T Consensus        91 ~~~~~v--~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          91 VKNKQV--TVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             ECSSCE--EEEEESSSEEEEEEESEEEECSC
T ss_pred             EeCCEE--EEEEEECCCCEEEECCEEEEeeC
Confidence            765553  3444332   5799999999998

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.73  E-value=1e-17  Score=133.34  Aligned_cols=103  Identities=24%  Similarity=0.451  Sum_probs=89.5

Q ss_pred             HHHHhhcCCCeEEEECCChHHHHHHHHHHhCC---CcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEE
Q 014997          125 ALISSLEKAKKVVVVGGGYIGMEVAAAAVGWK---LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNL  201 (414)
Q Consensus       125 ~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g---~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i  201 (414)
                      .+......+++++|||||++|+|+|..|..++   .+||++++.+++++ .+++++++.+.+.++++||+++++++++++
T Consensus        12 ~~~~l~~~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~-~~d~~~~~~l~~~l~~~GV~v~~~~~v~~i   90 (117)
T d1aoga2          12 EAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILR-GFDHTLREELTKQLTANGIQILTKENPAKV   90 (117)
T ss_dssp             HHTTCSSCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSST-TSCHHHHHHHHHHHHHTTCEEEESCCEEEE
T ss_pred             HHhCchhcCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhc-ccchHHHHHHHHHHHhcCcEEEcCCEEEEE
Confidence            33333456799999999999999998877654   57999999999997 589999999999999999999999999999


Q ss_pred             EecCCCcEEEEEeCCCcEEecCEEEEcc
Q 014997          202 EAGSDGRVAAVKLEDGSTIDADTIVIGI  229 (414)
Q Consensus       202 ~~~~~~~~~~v~~~~g~~i~~D~vi~a~  229 (414)
                      +...++.. .+.+++|++++||.||+|+
T Consensus        91 e~~~~~~~-~v~~~~G~~i~~D~Vi~AI  117 (117)
T d1aoga2          91 ELNADGSK-SVTFESGKKMDFDLVMMAI  117 (117)
T ss_dssp             EECTTSCE-EEEETTSCEEEESEEEECS
T ss_pred             EEcCCCeE-EEEECCCcEEEeCEEEEeC
Confidence            87666654 5899999999999999984

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.73  E-value=1.2e-17  Score=134.18  Aligned_cols=108  Identities=15%  Similarity=0.228  Sum_probs=92.0

Q ss_pred             HHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEE
Q 014997          123 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE  202 (414)
Q Consensus       123 ~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~  202 (414)
                      ++++......+++++|||||++|+|+|..++++|.+||++++.+++++ .+++++++.+.+.++++||++++++.+++++
T Consensus        16 s~~~l~l~~~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~-~~d~~~~~~l~~~l~~~gv~~~~~~~v~~v~   94 (125)
T d1ojta2          16 SSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQ-GADRDLVKVWQKQNEYRFDNIMVNTKTVAVE   94 (125)
T ss_dssp             HHHHTTCCCCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSST-TSCHHHHHHHHHHHGGGEEEEECSCEEEEEE
T ss_pred             HHHhhCccccCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccc-cchhhHHHHHHHHHHHcCcccccCcEEEEEE
Confidence            344444445689999999999999999999999999999999999998 5899999999999999999999999999998


Q ss_pred             ecCCCcEEEEEeCCC--cEEecCEEEEccCC
Q 014997          203 AGSDGRVAAVKLEDG--STIDADTIVIGIGA  231 (414)
Q Consensus       203 ~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~  231 (414)
                      ..+++....+...+|  ++++||.|++|+|+
T Consensus        95 ~~~~g~~v~~~~~~g~~~~i~~D~vl~A~GR  125 (125)
T d1ojta2          95 PKEDGVYVTFEGANAPKEPQRYDAVLVAAGR  125 (125)
T ss_dssp             EETTEEEEEEESSSCCSSCEEESCEEECCCE
T ss_pred             EcCCcEEEEEEeCCCCeEEEEcCEEEEecCC
Confidence            776664434444444  47999999999984

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=99.71  E-value=5.3e-17  Score=138.95  Aligned_cols=159  Identities=23%  Similarity=0.308  Sum_probs=113.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCC--CcEEEEeeCCcccccccCHHHH---------HHHHHHHHhCCcEEEcCceEEE
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQRLFTPSLA---------QRYEQLYQQNGVKFVKGASIKN  200 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l~~~~~~~~~---------~~~~~~l~~~gv~i~~~~~v~~  200 (414)
                      .+|+|+|||||++|+|+|..|++++  .+||++++.+.++.....+...         ......+...++++..+.. ..
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~   79 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDSA-TG   79 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHHHTTTEEEECCCE-EE
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhhhhhhhccccceeEeeeee-Ee
Confidence            3799999999999999999999987  5789999988665432222111         1112345667888887643 33


Q ss_pred             EEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhh--------cCCcccCCCEEEcCC-CC-CCCCcEEEEcccc
Q 014997          201 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER--------VGLNSSVGGIQVDGQ-FR-TRMPGIFAIGDVA  270 (414)
Q Consensus       201 i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~--------~gl~~~~g~i~vd~~-~~-t~~~~IyA~GD~a  270 (414)
                      +.  ....  .+.+.+++++++|.+|+|+|.+|+..++..        .++..+++++.++.. ++ ++.++||++||++
T Consensus        80 ~~--~~~~--~~~~~~~~~i~~D~li~atG~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iGd~~  155 (186)
T d1fcda1          80 ID--PDKK--LVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQIAGLTNDAGWCPVDIKTFESSIHKGIHVIGDAS  155 (186)
T ss_dssp             CC--TTTT--EEEETTSCEEECSEEEECCCEEECCTTSTEEECHHHHHHTCCCTTSSEEBCSSSCBBSSSTTEEECTTSE
T ss_pred             ee--eccc--eeecccceeeccceEEEEeccccchhhhhhhhhhheeccCcccccccccceeeeeecccccCceEecccc
Confidence            32  1222  567889999999999999999998765433        344455667777654 33 6899999999998


Q ss_pred             ccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997          271 AFPLKMYDRTARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                      .....       ...+..|..||+.+|+||+.
T Consensus       156 ~~~~~-------p~~~~~A~~q~~~~A~ni~~  180 (186)
T d1fcda1         156 IANPM-------PKSGYSANSQGKVAAAAVVV  180 (186)
T ss_dssp             ECTTC-------CSSHHHHHHHHHHHHHHHHH
T ss_pred             ccCCC-------CchHhHHHHHHHHHHHHHHH
Confidence            65321       12577899999999999975

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.70  E-value=4.4e-17  Score=129.69  Aligned_cols=104  Identities=30%  Similarity=0.455  Sum_probs=87.2

Q ss_pred             HHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEE
Q 014997          123 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE  202 (414)
Q Consensus       123 ~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~  202 (414)
                      ++.+......+++++|||||++|+|+|..|+++|.+||++++.+++++ .+++++++.+.+.++++||++++++.+++++
T Consensus        12 s~~~l~~~~~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~-~~d~~~~~~l~~~l~~~GI~i~~~~~v~~i~   90 (117)
T d1ebda2          12 STGALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILS-GFEKQMAAIIKKRLKKKGVEVVTNALAKGAE   90 (117)
T ss_dssp             HHHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-TSCHHHHHHHHHHHHHTTCEEEESEEEEEEE
T ss_pred             hhHhhChhhcCCeEEEECCCccceeeeeeecccccEEEEEEecceecc-cccchhHHHHHHHHHhcCCEEEcCCEEEEEE
Confidence            444444445679999999999999999999999999999999999997 5899999999999999999999999999998


Q ss_pred             ecCCCcEEEEEeCCC--cEEecCEEEEc
Q 014997          203 AGSDGRVAAVKLEDG--STIDADTIVIG  228 (414)
Q Consensus       203 ~~~~~~~~~v~~~~g--~~i~~D~vi~a  228 (414)
                      ..+++.... ...+|  ++++||.|+++
T Consensus        91 ~~~~~~~v~-~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          91 EREDGVTVT-YEANGETKTIDADYVLVT  117 (117)
T ss_dssp             EETTEEEEE-EEETTEEEEEEESEEEEC
T ss_pred             EcCCEEEEE-EEeCCCEEEEEeEEEEEC
Confidence            765553222 22344  57999999984

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.70  E-value=1.4e-16  Score=142.57  Aligned_cols=160  Identities=24%  Similarity=0.364  Sum_probs=109.7

Q ss_pred             eEEEECCChHHHHHHHHHHhCC---CcEEEEeeCCc--------------c---------c---cc----------ccC-
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWK---LDTTIIFPENH--------------L---------L---QR----------LFT-  174 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g---~~Vtlv~~~~~--------------~---------l---~~----------~~~-  174 (414)
                      +|+|||+|+.|+.+|..+++++   .+|+++++..-              +         +   ..          .++ 
T Consensus         3 ~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~~GG~cln~GciPsK~ll~~a~~~~~~~~~~~~G~~i~~~~~~~d~   82 (233)
T d1xdia1           3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGIGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAKISL   82 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------CBCH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCCCCceeecccccccEEEEeecchhhhhhhhhhcCCcccccCceeee
Confidence            7999999999999999887765   56889986430              0         0   00          000 


Q ss_pred             H-----------HHHHHHHHHHHhCCcEEEcCceEEEEEecC--CCcEEEEEeCCCc--EEecCEEEEccCCcCCChh--
Q 014997          175 P-----------SLAQRYEQLYQQNGVKFVKGASIKNLEAGS--DGRVAAVKLEDGS--TIDADTIVIGIGAKPTVSP--  237 (414)
Q Consensus       175 ~-----------~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~--~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~~~~--  237 (414)
                      +           .....+...++..||+++.+.... +....  ......+...+|+  ++++|.+|+++|.+|....  
T Consensus        83 ~~~~~~~~~v~~~~~~~~~~~~~~~gV~vi~G~~~~-~~~~~~~~~~~v~v~~~dg~~~~i~ad~viiAtG~~p~~~~~~  161 (233)
T d1xdia1          83 PQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGEL-IDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSG  161 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEE-CCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECCCGGC
T ss_pred             eeeccccceeeeeeecceehhhcccceeEEECcccc-cccccccccceEEEEecCCceeeeecceeeeecCccccccccc
Confidence            0           111224556788899998774221 11110  1122345566664  6999999999999886421  


Q ss_pred             ---------hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC
Q 014997          238 ---------FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT  305 (414)
Q Consensus       238 ---------l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~~~  305 (414)
                               ++..+++.+ +|+|.||++|||+.|+|||+|||+..+.          ....|..+|+.||.|+++...
T Consensus       162 ~~~~~~~l~l~~~gv~~~~~G~I~vd~~~~T~~~gIyA~GDv~~~~~----------l~~~A~~~g~~aa~~~~g~~~  229 (233)
T d1xdia1         162 SVPNTSGLGLERVGIQLGRGNYLTVDRVSRTLATGIYAAGDCTGLLP----------LASVAAMQGRIAMYHALGEGV  229 (233)
T ss_dssp             EEECCSSSCTTTTTCCCBTTTBCCCCSSSBCSSTTEEECSGGGTSCS----------CHHHHHHHHHHHHHHHTTCCC
T ss_pred             ccccccccccchhhhcccCCCcCCcCCCcccCCCCEEEEEEeCCCch----------hHHHHHHHHHHHHHHHcCCCC
Confidence                     345566665 5779999999999999999999987532          344599999999999997543

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=6.2e-17  Score=130.27  Aligned_cols=106  Identities=23%  Similarity=0.388  Sum_probs=88.1

Q ss_pred             HHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEe
Q 014997          124 DALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  203 (414)
Q Consensus       124 ~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~  203 (414)
                      +.+...-..+++++|||||++|+|+|..|+++|.+||++++++++++ .+++++++.+.+.++++||++++++++++++.
T Consensus        13 ~~~~~l~~~pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~-~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~   91 (125)
T d3grsa2          13 DGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLR-SFDSMISTNCTEELENAGVEVLKFSQVKEVKK   91 (125)
T ss_dssp             HHHTTCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT-TSCHHHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred             HHHhChhhcCCEEEEEcCCccHHHHHHHHhcCCcEEEEEeecccccc-chhhHHHHHHHHHHHHCCCEEEeCCEEEEEEE
Confidence            33333334579999999999999999999999999999999999997 58999999999999999999999999999987


Q ss_pred             cCCCcEEE-EEeCCCc------EEecCEEEEccC
Q 014997          204 GSDGRVAA-VKLEDGS------TIDADTIVIGIG  230 (414)
Q Consensus       204 ~~~~~~~~-v~~~~g~------~i~~D~vi~a~G  230 (414)
                      .+++.... +...+|+      .++||.|++|+|
T Consensus        92 ~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          92 TLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             ETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred             cCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence            66654322 3334442      578999999998

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.70  E-value=5.5e-17  Score=130.14  Aligned_cols=106  Identities=21%  Similarity=0.424  Sum_probs=90.5

Q ss_pred             HHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEE
Q 014997          123 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE  202 (414)
Q Consensus       123 ~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~  202 (414)
                      ++.+......+++++|||||++|+|+|..|+++|.+||++++.+++++ .++++++..+.+.|++.||++++++.+++++
T Consensus        15 s~~~l~l~~~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~-~~d~~~~~~l~~~l~~~GI~i~~~~~v~~i~   93 (123)
T d1dxla2          15 STGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP-TMDAEIRKQFQRSLEKQGMKFKLKTKVVGVD   93 (123)
T ss_dssp             HHHHTTCSSCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHSSCCEECSEEEEEEE
T ss_pred             HHHhhCccccCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCc-hhhhcchhhhhhhhhcccceEEcCCceEEEE
Confidence            444444445689999999999999999999999999999999999997 5899999999999999999999999999999


Q ss_pred             ecCCCcEEEEEeCCC---cEEecCEEEEcc
Q 014997          203 AGSDGRVAAVKLEDG---STIDADTIVIGI  229 (414)
Q Consensus       203 ~~~~~~~~~v~~~~g---~~i~~D~vi~a~  229 (414)
                      ..+++....+...++   +.++||.|++|.
T Consensus        94 ~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          94 TSGDGVKLTVEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             CSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred             EccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence            776665555555443   459999999873

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=9.2e-17  Score=142.30  Aligned_cols=154  Identities=21%  Similarity=0.371  Sum_probs=109.0

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc-------------------------------c---ccccCH-----
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL-------------------------------L---QRLFTP-----  175 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~-------------------------------l---~~~~~~-----  175 (414)
                      .++|||+|+.|+++|..+++.|.+|+++++...-                               .   ...++.     
T Consensus         5 DviIIG~GpaG~~aA~~aar~G~kV~vIEk~~~GG~c~n~g~~~~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (221)
T d3grsa1           5 DYLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRVIKE   84 (221)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGTSCCCCCCCCHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEeccCCCCccccchhhhhhhhhhHHHHHHHHhhhhhccccccccchhhhhhhh
Confidence            5899999999999999999999999999875310                               0   000110     


Q ss_pred             -------HHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC--------Ch--hh
Q 014997          176 -------SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT--------VS--PF  238 (414)
Q Consensus       176 -------~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~--------~~--~l  238 (414)
                             .+.....+.+++.||+++.+...  +. . .... .+. .....+.++.+++++|..|.        ++  .|
T Consensus        85 ~~~~~v~~~~~~~~~~~~~~gV~~i~G~a~--~~-~-~~~~-~~~-~~~~~~~~~~~~iatG~~p~vp~~r~p~~~~l~L  158 (221)
T d3grsa1          85 KRDAYVSRLNAIYQNNLTKSHIEIIRGHAA--FT-S-DPKP-TIE-VSGKKYTAPHILIATGGMPSTPHERVPNTKDLSL  158 (221)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEESCCE--EC-S-CSSC-EEE-ETTEEEECSCEEECCCEEECCCCTEEESCTTTTG
T ss_pred             hhheEEeeeccchhhhhccCceEEEEEeee--ec-c-ccce-eee-eeccccccceeEEecCccccCCCccccCCCCcCc
Confidence                   11223345578899999876532  11 1 1111 222 23357889999999996554        33  26


Q ss_pred             hhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCC
Q 014997          239 ERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ  304 (414)
Q Consensus       239 ~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~~  304 (414)
                      ++.|+..+ +|+|.||+++|||.|+|||+|||+..+.          ....|..+|+.||++|.+..
T Consensus       159 ~~~gv~~~~~G~I~vd~~~~T~~~gvyA~GDv~~~~~----------l~~~A~~~G~~aa~~~~~~~  215 (221)
T d3grsa1         159 NKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKAL----------LTPVAIAAGRKLAHRLFEYK  215 (221)
T ss_dssp             GGTTCCBCTTSCBCCCTTCBCSSTTEEECGGGGTSSC----------CHHHHHHHHHHHHHHHHSCC
T ss_pred             hhcCcEECCCccEEeCCCccccCCcEEEEEEccCCcC----------cHHHHHHHHHHHHHHHcCCC
Confidence            77888875 6789999999999999999999987532          34559999999999999743

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.69  E-value=4.8e-17  Score=129.00  Aligned_cols=97  Identities=23%  Similarity=0.430  Sum_probs=83.2

Q ss_pred             hcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcE
Q 014997          130 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV  209 (414)
Q Consensus       130 ~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~  209 (414)
                      -..+++++|||||++|+|+|..|+++|++||++++.+++++. +++++++.+.+.++++||+++++++|++++.   +..
T Consensus        18 ~~~p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~-~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~---~~~   93 (115)
T d1lvla2          18 KALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT-YDSELTAPVAESLKKLGIALHLGHSVEGYEN---GCL   93 (115)
T ss_dssp             SSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHHTCEEETTCEEEEEET---TEE
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHhhcccceEEEeeecccccc-ccchhHHHHHHHHHhhcceEEcCcEEEEEcC---CeE
Confidence            345799999999999999999999999999999999999985 8999999999999999999999999999962   322


Q ss_pred             EEEE-eCCCcEEecCEEEEccC
Q 014997          210 AAVK-LEDGSTIDADTIVIGIG  230 (414)
Q Consensus       210 ~~v~-~~~g~~i~~D~vi~a~G  230 (414)
                      .... ..++++++||.|++|+|
T Consensus        94 ~~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          94 LANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             EEECSSSCCCEECCSCEEECCC
T ss_pred             EEEEcCCCeEEEEcCEEEEecC
Confidence            2222 23345899999999998

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.67  E-value=2.2e-16  Score=139.85  Aligned_cols=153  Identities=23%  Similarity=0.339  Sum_probs=109.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc-----------------------cccc--------------ccCH-
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH-----------------------LLQR--------------LFTP-  175 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~-----------------------~l~~--------------~~~~-  175 (414)
                      ..++|||+|+.|+++|..++++|.+|+++++..-                       .+.+              .... 
T Consensus         6 ~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~~GG~c~~~gc~p~k~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   85 (220)
T d1lvla1           6 TTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPRLDIG   85 (220)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCCCHH
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcccccccccchhhhhhHHHHhhhhhccccccceEEeccceehHH
Confidence            4799999999999999999999999999986520                       0000              0000 


Q ss_pred             -----------HHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCCh--------
Q 014997          176 -----------SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS--------  236 (414)
Q Consensus       176 -----------~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~--------  236 (414)
                                 .........+.+.+++++.+...  +...  .   .+ ..++..+.+|.+++|+|.+|...        
T Consensus        86 ~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~~~--~~~~--~---~~-~~~~~~i~a~~viiAtG~~p~~lp~~~~~~~  157 (220)
T d1lvla1          86 QSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAK--VLDG--K---QV-EVDGQRIQCEHLLLATGSSSVELPRRPRTKG  157 (220)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEE--EEET--T---EE-EETTEEEECSEEEECCCEEECCBTEEECCSS
T ss_pred             HHhhhheeEEeeeccchhhhhccCceEEEEeeec--ccCc--c---cc-cccceeEeeceeeEcCCCCcccccccccccC
Confidence                       01122334556778888876432  2211  1   12 23456899999999999988641        


Q ss_pred             -hhhhcCCcccCCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCC
Q 014997          237 -PFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ  304 (414)
Q Consensus       237 -~l~~~gl~~~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~~  304 (414)
                       .+...++..++++|.||+++||+.|+|||+|||+..+.          ....|..+|+.+|++|+|..
T Consensus       158 ~~~~~~~~~~~~g~i~vd~~~~T~~~~I~A~GDv~~~~~----------l~~~a~~~g~~~a~~i~G~~  216 (220)
T d1lvla1         158 FNLECLDLKMNGAAIAIDERCQTSMHNVWAIGDVAGEPM----------LAHRAMAQGEMVAEIIAGKA  216 (220)
T ss_dssp             SSGGGSCCCEETTEECCCTTCBCSSTTEEECGGGGCSSC----------CHHHHHHHHHHHHHHHTTCC
T ss_pred             CcceeeehhhcCCcccccchhhcCCCCEEEEEEeCCccc----------chhhhhhhHHHHHHHHcCCC
Confidence             24455666778899999999999999999999987543          44568999999999999743

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=4.7e-16  Score=139.02  Aligned_cols=157  Identities=21%  Similarity=0.289  Sum_probs=111.3

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc------------------------------------------c-
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------------------------------R-  171 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------~-  171 (414)
                      .|+|||+|+.|+.+|..+++.|.+|.++++.+....                                          . 
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~~~~~~~~GG~c~~~g~~~~k~l~~~~~~~~~~~~~~~~gi~~~~~   84 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWKLEDT   84 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTTTTBCCCSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccccccccccccccchhhhhhhhhhhhHhhhhhccccccccc
Confidence            589999999999999999999999999995432100                                          0 


Q ss_pred             -ccC-H-----------HHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCc--EEecCEEEEccCCcCCCh
Q 014997          172 -LFT-P-----------SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVS  236 (414)
Q Consensus       172 -~~~-~-----------~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~~~  236 (414)
                       ..+ .           .+...+...+++.+|.++.+...  +..  . ....+...++.  .+.++.+++++|.+|...
T Consensus        85 ~~~d~~~~~~~~~~~i~~l~~g~~~~l~~~~V~vi~G~~~--~~~--~-~~~~v~~~~~~~~~i~a~~ivi~~G~~p~~~  159 (235)
T d1h6va1          85 VKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYENAYGK--FIG--P-HKIMATNNKGKEKVYSAERFLIATGERPRYL  159 (235)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEECCEEE--EEE--T-TEEEEECTTSCEEEEEEEEEEECCCEEECCC
T ss_pred             eeechhhhhheeeeeeeeccchhhhhhhccCceEEEeEEe--ecc--c-cceecccccccccccccccceeecCCCceeE
Confidence             000 0           11223445667789999877532  321  1 22244455553  588999999999998642


Q ss_pred             ----------hhhhcCCccc--CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCC
Q 014997          237 ----------PFERVGLNSS--VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ  304 (414)
Q Consensus       237 ----------~l~~~gl~~~--~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~~  304 (414)
                                .++..++..+  .|.|.||++||||+|+|||+|||+..+..         ....|..+|+.||++|+++.
T Consensus       160 ~i~~~~~~~~~l~~~gv~l~~~~g~I~vd~~~~TsvpgIyA~GDv~~g~~~---------l~~~A~~eG~~aa~~~~g~~  230 (235)
T d1h6va1         160 GIRDSCTRTIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEGKLE---------LTPVAIQAGRLLAQRLYGGS  230 (235)
T ss_dssp             SSEEESCTTSCCTTTTCCCCSSSCCBCCCTTSBCSSTTEEECGGGBTTSCC---------CHHHHHHHHHHHHHHHHHCC
T ss_pred             EEeeccceeeccccceeeeccccCccccCCccccCCCCEEEEEeccCCCcc---------cHHHHHHHHHHHHHHHcCCC
Confidence                      2445566654  47899999999999999999999864321         34459999999999999765


Q ss_pred             C
Q 014997          305 T  305 (414)
Q Consensus       305 ~  305 (414)
                      +
T Consensus       231 ~  231 (235)
T d1h6va1         231 T  231 (235)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.66  E-value=1.1e-15  Score=132.49  Aligned_cols=156  Identities=18%  Similarity=0.253  Sum_probs=113.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc--------------------ccccCHHHHHHHHHHHHhCCcE
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------------------QRLFTPSLAQRYEQLYQQNGVK  191 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l--------------------~~~~~~~~~~~~~~~l~~~gv~  191 (414)
                      ..++|+|||||++|+++|..+++.|.+|+++++.....                    ....++++...+.+.+++.|++
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~q~~~~g~~   83 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTT   83 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCE
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccccccchhhhccccccccccchHHHHHHHHHHHhhcce
Confidence            35789999999999999999999999999998653210                    0112356667777777889999


Q ss_pred             EEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCC-----cCCChhhhhcCCccc-CCCEEEcC-CCCCCCCcEE
Q 014997          192 FVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA-----KPTVSPFERVGLNSS-VGGIQVDG-QFRTRMPGIF  264 (414)
Q Consensus       192 i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~-----~p~~~~l~~~gl~~~-~g~i~vd~-~~~t~~~~Iy  264 (414)
                      +..+ .|.+++..++.  ..+. .+.....+|.+++++|.     .|++.++++ +++.+ +|.|.+|+ .++|+.|+||
T Consensus        84 i~~~-~V~~~~~~~~~--~~v~-~~~~~~~~~~~~~a~g~~~~g~~p~~~~~~~-~veld~~G~i~~~~~~~~Ts~~GV~  158 (192)
T d1vdca1          84 IFTE-TVTKVDFSSKP--FKLF-TDSKAILADAVILAIGAVAKGHEPATKFLDG-GVELDSDGYVVTKPGTTQTSVPGVF  158 (192)
T ss_dssp             EECC-CCCEEECSSSS--EEEE-CSSEEEEEEEEEECCCEEECCEEESCGGGTT-SSCBCTTSCBCCCTTSCBCSSTTEE
T ss_pred             eeee-eEEecccccCc--EEec-ccceeeeeeeEEEEeeeeecccCchHHHhcC-ceeecCCCeEEeCCCceEecCCCEE
Confidence            9866 57777754333  2344 44457899999999985     477776654 56654 67899985 8899999999


Q ss_pred             EEccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 014997          265 AIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  301 (414)
Q Consensus       265 A~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~  301 (414)
                      |+|||...+..         ....|...|..||.++.
T Consensus       159 a~GDv~~~~~r---------~~v~A~g~G~~aA~~~~  186 (192)
T d1vdca1         159 AAGDVQDKKYR---------QAITAAGTGCMAALDAE  186 (192)
T ss_dssp             ECGGGGCSSCC---------CHHHHHHHHHHHHHHHH
T ss_pred             EeeecCCcccc---------eEEEEEechHHHHHHHH
Confidence            99999886543         23346667777766543

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=1e-15  Score=132.37  Aligned_cols=155  Identities=21%  Similarity=0.278  Sum_probs=111.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc---------------ccccCHHHHHHHHHHHHhCCcEEEcCc
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---------------QRLFTPSLAQRYEQLYQQNGVKFVKGA  196 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l---------------~~~~~~~~~~~~~~~l~~~gv~i~~~~  196 (414)
                      +.++|+|||||++|+++|..+++.|.+|+++++.+...               ....+.++.+.+...+.+.++.+..+ 
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   82 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD-   82 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECC-
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccccchhhhhhccccccchHHHHHHHHHHHHhcCcEEecc-
Confidence            46789999999999999999999999999998764311               11123466667777788899999875 


Q ss_pred             eEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC-----ChhhhhcCCcccCCCEEEcC-----CCCCCCCcEEEE
Q 014997          197 SIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT-----VSPFERVGLNSSVGGIQVDG-----QFRTRMPGIFAI  266 (414)
Q Consensus       197 ~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~-----~~~l~~~gl~~~~g~i~vd~-----~~~t~~~~IyA~  266 (414)
                      .|+++...++.  ..+...+ ..+.++.+++++|..|.     ..+++. .++.++|+|.+|.     .++|++|+|||+
T Consensus        83 ~V~~~~~~~~~--~~v~~~~-~~~~~~~viva~G~~~~~~~~~~~~~~~-~~e~~~g~i~~~~~~~~~~~~T~v~gV~aa  158 (190)
T d1trba1          83 HINKVDLQNRP--FRLNGDN-GEYTCDALIIATGASARYHSPNTAIFEG-QLELENGYIKVQSGIHGNATQTSIPGVFAA  158 (190)
T ss_dssp             CEEEEECSSSS--EEEEESS-CEEEEEEEEECCCEEECCEEESCGGGTT-TSCEETTEECCCCSSSSCTTBCSSTTEEEC
T ss_pred             eeEEEecCCCc--EEEEEee-eeEeeeeeeeecceeeeeecccceeecc-eEecCCcEEEEecCCcccccccccCeEEEe
Confidence            57777754332  2444444 57999999999997654     333433 3555678899984     468999999999


Q ss_pred             ccccccCCccCCcccccccHHHHHHHHHHHHHHH
Q 014997          267 GDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL  300 (414)
Q Consensus       267 GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i  300 (414)
                      |||+..+..         +.-.|..+|..||.++
T Consensus       159 GDv~~~~~~---------q~i~Aag~G~~AA~~a  183 (190)
T d1trba1         159 GDVMDHIYR---------QAITSAGTGCMAALDA  183 (190)
T ss_dssp             GGGGCSSSC---------CHHHHHHHHHHHHHHH
T ss_pred             EEecCccee---------EEEEEeccHHHHHHHH
Confidence            999875432         3445666777777554

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.64  E-value=1.1e-15  Score=136.24  Aligned_cols=158  Identities=25%  Similarity=0.311  Sum_probs=103.3

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc-----------------------------------ccC-----
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----------------------------------LFT-----  174 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----------------------------------~~~-----  174 (414)
                      .|+|||+|+.|+.+|..++++|.+|+|+++.+.+-..                                   .+.     
T Consensus         8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~GG~~~~~g~~~~~~~~~~a~~~~~~~~~~~~G~~~~~~~~~~~~~~   87 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPELDIDMLR   87 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCCHHHHH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeccccchhhhhhhhhhhHHhhhhHhhcCCcccCCcccHHHHH
Confidence            5899999999999999999999999999987643100                                   000     


Q ss_pred             -------HHHHHHHHHHHHhCCcEEEcCceEEEEE--------ecCCCcEEEEEeCCCcEEecCEEEEccCCc-CCCh--
Q 014997          175 -------PSLAQRYEQLYQQNGVKFVKGASIKNLE--------AGSDGRVAAVKLEDGSTIDADTIVIGIGAK-PTVS--  236 (414)
Q Consensus       175 -------~~~~~~~~~~l~~~gv~i~~~~~v~~i~--------~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~-p~~~--  236 (414)
                             ..+...+.......+++++.+.....-.        ....... .......+...++.++++.|.+ |+..  
T Consensus        88 ~~~~~~~~~l~~~~~~~~~~~~v~vi~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  166 (229)
T d1ojta1          88 AYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQ-AAPTGEKKIVAFKNCIIAAGSRAPNGKLI  166 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEEEEEEETTE-EEEEEEEEEEEEEEEEECCCEEEECGGGT
T ss_pred             HHHHHHHHHHhcchHhHhhcCceEEEEeeeeecCCccccccccccccccc-ccccccccceecceEEEEecccCCccccc
Confidence                   0111223334566777776543221110        0000000 0011111345666666666654 5433  


Q ss_pred             hhhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 014997          237 PFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA  303 (414)
Q Consensus       237 ~l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~  303 (414)
                      .+++.|++.+ +|+|.||++||||+|+|||+|||+..+.          ....|..+|+.||.+|++.
T Consensus       167 ~~e~~g~~~d~~G~I~vd~~~~TsvpgVyAaGDv~~~~~----------l~~~A~~eG~~Aa~~i~G~  224 (229)
T d1ojta1         167 SAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPM----------LAHKAVHEGHVAAENCAGH  224 (229)
T ss_dssp             TGGGTTCCCCTTSCCCCCTTSBCSSTTEEECGGGTCSSC----------CHHHHHHHHHHHHHHHTTC
T ss_pred             chhhhCccCCCCCCEEcCCCccCCCCCEEEEEecCCCcc----------hHHHHHHHHHHHHHHHcCC
Confidence            4688899875 6789999999999999999999987543          3445899999999999974

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=1.6e-15  Score=121.12  Aligned_cols=106  Identities=25%  Similarity=0.394  Sum_probs=84.4

Q ss_pred             HHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEE
Q 014997          123 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE  202 (414)
Q Consensus       123 ~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~  202 (414)
                      ++.+...-..+++++|||||++|+|+|..|+++|.+||++++. ++++ .+++++++.+.+.++++||+|++++.|++++
T Consensus        10 sd~~~~l~~~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~-~~l~-~~D~~~~~~l~~~l~~~Gv~i~~~~~v~~~~   87 (122)
T d1h6va2          10 SDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLR-GFDQDMANKIGEHMEEHGIKFIRQFVPTKIE   87 (122)
T ss_dssp             HHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-SSST-TSCHHHHHHHHHHHHHTTEEEEESCEEEEEE
T ss_pred             chHHhCcccCCCeEEEECCCccHHHHHHHHhhcCCeEEEEEec-hhhc-cCCHHHHHHHHHHHHHCCCEEEECCEEEEEE
Confidence            3444444456799999999999999999999999999999875 6776 5899999999999999999999999999997


Q ss_pred             ecCCC--cEEEEEeCC--C---cEEecCEEEEccC
Q 014997          203 AGSDG--RVAAVKLED--G---STIDADTIVIGIG  230 (414)
Q Consensus       203 ~~~~~--~~~~v~~~~--g---~~i~~D~vi~a~G  230 (414)
                      ..+++  ....+.+.+  +   ..++||.|++|+|
T Consensus        88 ~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          88 QIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             EEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred             EecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence            54332  122333322  2   2468999999998

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.62  E-value=7.8e-16  Score=136.49  Aligned_cols=156  Identities=24%  Similarity=0.350  Sum_probs=109.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc---------------------------------cc--------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ---------------------------------RL--------  172 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~---------------------------------~~--------  172 (414)
                      -.|+|||+|+.|+.+|..+++.|.+|.++++......                                 ..        
T Consensus         4 YDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~~~~~~gg~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~   83 (229)
T d3lada1           4 FDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTGEV   83 (229)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECSCC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCCccccccccccccccchhhhhhhhhhhhhhhhhhhhhcccccCcc
Confidence            4699999999999999999999999999986421100                                 00        


Q ss_pred             -cC------------HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCC--cEEecCEEEEccCCcCCCh-
Q 014997          173 -FT------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVS-  236 (414)
Q Consensus       173 -~~------------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~-  236 (414)
                       ++            ..+...+...++..||+++.+.....   .  .........++  ..+.++.+++++|.+|... 
T Consensus        84 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~gV~vi~G~~~~~---~--~~~~~~~~~~~~~~~~~~~~~i~atG~~~~~~~  158 (229)
T d3lada1          84 AIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLL---A--GKKVEVTAADGSSQVLDTENVILASGSKPVEIP  158 (229)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEEC---S--TTCEEEECTTSCEEEECCSCEEECCCEEECCCT
T ss_pred             eeecchhhhhhhHHHHHhhhhHHHHhhcCCeEEEEeEEccc---c--cceeeccccCccceeeecccccccCCccccccc
Confidence             00            01222344556778899887643321   1  11112233232  4688999999999887543 


Q ss_pred             --------hhhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCC
Q 014997          237 --------PFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ  304 (414)
Q Consensus       237 --------~l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~~  304 (414)
                              +++++|+..+ +|+|.||++|+|+.|+|||+|||...+.          ....|..+|..+|.+|++..
T Consensus       159 ~~~~~~~~~~~~~gv~l~~~G~i~vd~~~~T~vpgiyA~GDv~~g~~----------l~~~A~~~G~~aa~~i~g~~  225 (229)
T d3lada1         159 RRPVTTDLLAADSGVTLDERGFIYVDDYCATSVPGVYAIGDVVRGAM----------LAHKASEEGVVVAERIAGHK  225 (229)
T ss_dssp             EEECCTTCCSSCCSCCBCTTSCBCCCTTSBCSSTTEEECGGGSSSCC----------CHHHHHHHHHHHHHHHHHCC
T ss_pred             ccccccccchHhcCeeecCCCcEEecccccCCCCCEEEEeCCcchHH----------HHHHHHHHHHHHHHHHcCCC
Confidence                    4567788775 6789999999999999999999987543          34458899999999999753

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.62  E-value=3.5e-16  Score=131.04  Aligned_cols=149  Identities=11%  Similarity=0.017  Sum_probs=113.7

Q ss_pred             ccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCCeEEEE--CCChHHHHHHHHHHhCCCcEEEEeeCCcccccc
Q 014997           95 ATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVV--GGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL  172 (414)
Q Consensus        95 AtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVv--GgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~  172 (414)
                      |||+.|..++++||.+..+.+.+ +.++...  .....++.++|+  |||++|+|+|..|+++|++||++++.+++++. 
T Consensus         4 atG~~~~~~~pipG~~~~~~~v~-t~~d~l~--~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~-   79 (156)
T d1djqa2           4 TDGTNCLTHDPIPGADASLPDQL-TPEQVMD--GKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYM-   79 (156)
T ss_dssp             SSCCCTTTSSCCTTCCTTSTTEE-CHHHHHH--TCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHH-
T ss_pred             CCCCCCCCCCCCCCccCCCCEEE-CHHHHhc--CccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccccc-
Confidence            89999876546788776655444 4454432  223355666666  99999999999999999999999999988875 


Q ss_pred             cCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhcCCcccCCCEEE
Q 014997          173 FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQV  252 (414)
Q Consensus       173 ~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~g~i~v  252 (414)
                      +++.....+.+.|++.||++++++.+.+++.+      .+.+.+.....++.++.++|..|+.....+.+++.+ ..+.+
T Consensus        80 ~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~------~v~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~le~D-~vilv  152 (156)
T d1djqa2          80 HFTLEYPNMMRRLHELHVEELGDHFCSRIEPG------RMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFD-SLVLV  152 (156)
T ss_dssp             HHTTCHHHHHHHHHHTTCEEEETEEEEEEETT------EEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECS-EEEEE
T ss_pred             cchhHHHHHHHHHhhccceEEeccEEEEecCc------ceEEEeeeccccceeeeeeEEEecccCCccCcEecc-eEEEE
Confidence            66677788889999999999999999999843      344444444567889999999999888777777765 45665


Q ss_pred             cC
Q 014997          253 DG  254 (414)
Q Consensus       253 d~  254 (414)
                      +.
T Consensus       153 tg  154 (156)
T d1djqa2         153 TG  154 (156)
T ss_dssp             SC
T ss_pred             ec
Confidence            54

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=7.7e-14  Score=119.39  Aligned_cols=140  Identities=21%  Similarity=0.325  Sum_probs=106.9

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc--cc-----------ccccCHHHHHHHHHHHHhCCcEEEcCceEEEE
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH--LL-----------QRLFTPSLAQRYEQLYQQNGVKFVKGASIKNL  201 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~--~l-----------~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i  201 (414)
                      .|+|||||++|+++|..++++|.+|++++++..  ++           +....+.....+....++.+++......+..+
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL   82 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEEecCCcccccccceeccccchhhhHHHHHHHHHHhhheeceeeccceeeee
Confidence            589999999999999999999999999997421  11           11123556666777778889999988888877


Q ss_pred             EecCCC-cEEEEEeCCCcEEecCEEEEccCCcCCChhhhhcCCcc-cCCCEEEcCCCCCCCCcEEEEccccccCC
Q 014997          202 EAGSDG-RVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNS-SVGGIQVDGQFRTRMPGIFAIGDVAAFPL  274 (414)
Q Consensus       202 ~~~~~~-~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~-~~g~i~vd~~~~t~~~~IyA~GD~a~~~~  274 (414)
                      ...... ........++..+.++.++.++|..++.......++.. ..|.|.||..++|+.|+||++|||...+.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~i~v~~~~~t~~~gv~a~gd~~~~~~  157 (184)
T d1fl2a1          83 IPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLEGAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPY  157 (184)
T ss_dssp             ECCSSTTCCEEEEETTSCEEEEEEEEECCCEEEESCGGGTTTSCBCTTSCBCCCTTCBCSSTTEEECSTTBSCSS
T ss_pred             cccccccceeeeeeecceeeecccccccccccccccccccccccccccceeccCCceeeeCCCEEEEeeecCccc
Confidence            643322 23345566777899999999999876656555555554 36789999999999999999999998654

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=6.8e-14  Score=124.26  Aligned_cols=157  Identities=26%  Similarity=0.442  Sum_probs=103.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccc-----cC-------HH------------------------
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-----FT-------PS------------------------  176 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~-----~~-------~~------------------------  176 (414)
                      .-.|+|||+|+.|+.+|..++++|.+|+++++.+.+-..+     ++       .+                        
T Consensus         5 ~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~   84 (233)
T d1v59a1           5 SHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKINV   84 (233)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEEECH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCcceEeEEeeccccccccccchhHHHhhhhHhhcCeeEeeceecch
Confidence            3469999999999999999999999999999875531100     00       00                        


Q ss_pred             -------------HHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCC--------cEEecCEEE--------E
Q 014997          177 -------------LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--------STIDADTIV--------I  227 (414)
Q Consensus       177 -------------~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g--------~~i~~D~vi--------~  227 (414)
                                   +........++.+|+++.+.-  ++.   +.....+....+        ..++++.++        .
T Consensus        85 ~~~~~~~~~~i~~~~~~~~~l~~~~~v~~~~G~a--~f~---~~~~~~v~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~  159 (233)
T d1v59a1          85 ANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNG--SFE---DETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTP  159 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEE--EES---SSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEEECC
T ss_pred             hhhhheeeeEEEEeecceeeeeccCCeEEEEEEE--EEe---cCCCcEEEecccccceeeeeeeccCCeEEEecccccce
Confidence                         111122333445666654421  121   111112222211        234444444        4


Q ss_pred             ccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCC
Q 014997          228 GIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ  304 (414)
Q Consensus       228 a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~~  304 (414)
                      ++|.+|+++.  +++.|++.+ +|+|.||++++|+.|+|||+|||...+.          ....|..+|..||++|+++.
T Consensus       160 ~~G~~p~~~~l~l~~~gv~~~~~g~i~vd~~~~T~~~~v~A~GD~~~g~~----------l~~~a~~~G~~aa~~i~~~~  229 (233)
T d1v59a1         160 FVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGPM----------LAHKAEEEGIAAVEMLKTGH  229 (233)
T ss_dssp             CSCEEECCTTSCTTTTTCCBCTTSCBCCCTTSBCSSTTEEECGGGSSSCC----------CHHHHHHHHHHHHHHHHHSC
T ss_pred             ecccccCCCCcCchhcCeEEcCCCcEEECCeEecCCCCEEEEcCCcccHH----------HHHHHHHHHHHHHHHHccCC
Confidence            8999999874  577888875 6789999999999999999999987653          34458999999999998754

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.45  E-value=8.9e-13  Score=117.74  Aligned_cols=78  Identities=24%  Similarity=0.430  Sum_probs=64.4

Q ss_pred             cEEecCEEEEccCCcCCCh----------hhhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccH
Q 014997          218 STIDADTIVIGIGAKPTVS----------PFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHV  286 (414)
Q Consensus       218 ~~i~~D~vi~a~G~~p~~~----------~l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~  286 (414)
                      +.+++|.+++++|.+|...          .|+.++++.+ +|.|.||+++|||.|+|||+|||+..+.          ..
T Consensus       148 e~i~~~~i~ia~G~~p~~~~~~~~~~~~l~l~~~gv~~~~~G~I~vd~~~~Ts~~~iyA~GDv~~~~~----------~~  217 (240)
T d1feca1         148 ETLDTEYILLATGSWPQHLGIEVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRVM----------LT  217 (240)
T ss_dssp             EEEEEEEEEECCCEEECCCCSBEESCTTSCGGGGTCCBCTTSCBCCCTTCBCSSTTEEECGGGGCSCC----------CH
T ss_pred             EEEecceEEEecCCceeEccccccccCCCCccccCeEECCCCcEEcCcccCcCCCCEEEEEECCCCcc----------ch
Confidence            4689999999999998643          1567788875 5789999999999999999999987643          34


Q ss_pred             HHHHHHHHHHHHHHhcCCC
Q 014997          287 DHARQSAQHCIKALLSAQT  305 (414)
Q Consensus       287 ~~A~~~a~~aa~~i~~~~~  305 (414)
                      ..|..+|+.||+++++..+
T Consensus       218 ~~A~~eg~~aa~~~~~~~~  236 (240)
T d1feca1         218 PVAINEGAAFVDTVFANKP  236 (240)
T ss_dssp             HHHHHHHHHHHHHHHSSCC
T ss_pred             hhHHHHHHHHHHHHhCCCC
Confidence            4589999999999997543

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=1.8e-12  Score=113.84  Aligned_cols=151  Identities=25%  Similarity=0.360  Sum_probs=108.3

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc------------------------c------------ccC-H--
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------------R------------LFT-P--  175 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~------------------------~------------~~~-~--  175 (414)
                      .|+|||+|+.|+++|..++++|.+|+++++.. +-.                        .            .++ +  
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~-~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~   82 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYGQKCALIEAKE-LGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWETL   82 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEeccC-cCCeEecccccccccchhhHHHHHHHHhhhhhcCccCCcccccHHHH
Confidence            58999999999999999999999999999753 100                        0            000 0  


Q ss_pred             ---------HHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCCh--------hh
Q 014997          176 ---------SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS--------PF  238 (414)
Q Consensus       176 ---------~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~--------~l  238 (414)
                               .+...++..+++.||++..+.......        .....++..+.++.+++++|.+|...        .+
T Consensus        83 ~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~~--------~~~~~~~~~~~~~~~iiatG~~p~ip~ip~~~~l~l  154 (217)
T d1gesa1          83 IASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDA--------KTLEVNGETITADHILIATGGRPSHPREPANDNINL  154 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEET--------TEEEETTEEEEEEEEEECCCEEECCCEEESCTTSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCeEEEEeeeccccee--------eeecCCCceeeeeeeeeecCccccCCCCCCcCCccc
Confidence                     112234445677899888765433221        11234567899999999999886543        13


Q ss_pred             hhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCC
Q 014997          239 ERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ  304 (414)
Q Consensus       239 ~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~~  304 (414)
                      ...++..+ ++.+.+|+.++|+.|+||++||+....          +....+..+|..++.++++..
T Consensus       155 ~~~gv~~~~~~~i~~d~~~~t~~~~i~~iG~g~~g~----------ela~~~~~~G~~v~~~~~~~~  211 (217)
T d1gesa1         155 EAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAV----------ELTPVAVAAGRRLSERLFNNK  211 (217)
T ss_dssp             HHHTCCBCTTSCBCCCTTSBCSSTTEEECSGGGTSC----------CCHHHHHHHHHHHHHHHHTTC
T ss_pred             ccccEEEcCCccEeeCchhccCCCcEEEECCCccHH----------HHHHHHHHHHHHHHHHHhCCC
Confidence            45566664 678999999999999999999998743          345568889999999998654

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.41  E-value=2e-12  Score=114.77  Aligned_cols=78  Identities=24%  Similarity=0.428  Sum_probs=61.5

Q ss_pred             cEEecCEEEEccCCcCCC--------hh--hhhcCCcccCCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHH
Q 014997          218 STIDADTIVIGIGAKPTV--------SP--FERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVD  287 (414)
Q Consensus       218 ~~i~~D~vi~a~G~~p~~--------~~--l~~~gl~~~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~  287 (414)
                      +.++++.+++.++.+|..        ..  +...++..++|+|.||++|||+.|+|||+|||...+.          ...
T Consensus       148 ~~~~a~~v~i~~~~~~~~~~~~~~~~~~l~~~~~gv~~~~G~I~vde~~~T~~~~iyAvGDv~~~~~----------l~~  217 (238)
T d1aoga1         148 ERLETEHILLASGSWPHMPNGRSPRTKDLQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRVM----------LTP  217 (238)
T ss_dssp             EEEEBSCEEECCCEEECCCCCEEECCGGGCGGGTTCCEETTEECCCTTCBCSSTTEEECGGGGTSCC----------CHH
T ss_pred             ccccccceeeecccccccccccccceeeecccccEEEEcCCeEEecCCeeeccCCEEEEEEecCCcc----------chh
Confidence            357788888876666543        32  3557888888999999999999999999999987543          345


Q ss_pred             HHHHHHHHHHHHHhcCCC
Q 014997          288 HARQSAQHCIKALLSAQT  305 (414)
Q Consensus       288 ~A~~~a~~aa~~i~~~~~  305 (414)
                      .|..+|+.||++|+++.+
T Consensus       218 ~A~~eg~~aa~~i~g~~~  235 (238)
T d1aoga1         218 VAINEAAALVDTVFGTTP  235 (238)
T ss_dssp             HHHHHHHHHHHHHHSSSC
T ss_pred             hHHHHHHHHHHHHcCCCC
Confidence            699999999999997543

>d1q1ra3 d.87.1.1 (A:320-422) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.41  E-value=9e-13  Score=101.05  Aligned_cols=92  Identities=20%  Similarity=0.321  Sum_probs=77.1

Q ss_pred             CCCCCCCceeeeccCCCCCCcceeeeEeecCCC--cEEEEcCCC-CcEEEEEEeCCEEEEEEeecCChHHhhHHHHHHhC
Q 014997          306 HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARS  382 (414)
Q Consensus       306 ~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~--~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~  382 (414)
                      +++..+|||||+||+.+       +|++|...+  +.+.+|+.+ .+|..||+++|+|+|++. +|.++++..+++||+.
T Consensus         2 p~~~~vP~FWSdQ~d~~-------lQ~~G~~~~~d~~v~rg~~~~~~f~~~y~~~~~lvav~~-vn~~~~~~~~r~li~~   73 (103)
T d1q1ra3           2 PRDEAAPWFWSDQYEIG-------LKMVGLSEGYDRIIVRGSLAQPDFSVFYLQGDRVLAVDT-VNRPVEFNQSKQIITD   73 (103)
T ss_dssp             CCCCCCCEEEEEETTEE-------EEEEECCTTCSEEEEEEETTTTEEEEEEEETTEEEEEEE-ESCHHHHHHHHHHHHT
T ss_pred             CCCCCCCcEeeecCCCe-------eEEEECCCCCceEEEecCCCCCeEEEEEEeCCeEEEEEE-eCCHHHHHHHHHHHHC
Confidence            35677999999999865       899998654  567788775 689999999999999986 8999999999999999


Q ss_pred             CCCCChhhhcCCCcHHHHHHHHh
Q 014997          383 QPFVDKAKLQQASSVEEALEIAR  405 (414)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~  405 (414)
                      +..++++.|.|+..-...+.-++
T Consensus        74 ~~~~~~~~L~D~~~~Lk~Ll~~~   96 (103)
T d1q1ra3          74 RLPVEPNLLGDESVPLKEIIAAA   96 (103)
T ss_dssp             TCCCCHHHHTCTTSCHHHHHHHH
T ss_pred             CCCcCHHHhcCCCCCHHHHHHhh
Confidence            99999999998886555544443

>d1d7ya3 d.87.1.1 (A:309-405) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.37  E-value=2.9e-12  Score=97.18  Aligned_cols=88  Identities=23%  Similarity=0.324  Sum_probs=74.0

Q ss_pred             CCCCCCCceeeeccCCCCCCcceeeeEeecCCC--cEEEE-cCCC-CcEEEEEEeCCEEEEEEeecCChHHhhHHHHHHh
Q 014997          306 HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--ETIEI-GNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLAR  381 (414)
Q Consensus       306 ~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~--~~~~~-~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~  381 (414)
                      .+|..+|||||+||+.+       +|++|....  +.+.+ ++.+ .+|..+|.++|+++|++. +|.++++..+++||+
T Consensus         3 ~~y~~vP~FWSdQ~d~~-------iq~~G~~~~~~~~v~~~~~~~~~~f~~~y~~~g~lvgv~~-vn~~~~~~~~rrli~   74 (97)
T d1d7ya3           3 PGYAELPWYWSDQGALR-------IQVAGLASGDEEIVRGEVSLDAPKFTLIELQKGRIVGATC-VNNARDFAPLRRLLA   74 (97)
T ss_dssp             CCCCCCCEEEEEETTEE-------EEEEECSCCSEEEEEEECCSSSCEEEEEEEETTEEEEEEE-ESCHHHHHHHHHHHH
T ss_pred             CCCCCCCcEEeccCCCe-------eEEEecCCCCCEEEEeccCCCCCeEEEEEEeCCEEEEEEE-eCCHHHHHHHHHHHH
Confidence            47999999999999864       899998764  33443 4544 679999999999999986 899999999999999


Q ss_pred             CCCCCChhhhcCCCcHHHHH
Q 014997          382 SQPFVDKAKLQQASSVEEAL  401 (414)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~  401 (414)
                      .+..++++.|.|+..-...+
T Consensus        75 ~~~~~~~~~LaD~~~~Lk~L   94 (97)
T d1d7ya3          75 VGAKPDRAALADPATDLRKL   94 (97)
T ss_dssp             TTCCCCHHHHHSSCCHHHHH
T ss_pred             CCCCCCHHHhcCCCCCHHHH
Confidence            99999999999888765544

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1e-13  Score=121.90  Aligned_cols=101  Identities=25%  Similarity=0.380  Sum_probs=71.5

Q ss_pred             CCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCC--CCCCC---------HhHHHHcCCeEEcCCcEE
Q 014997            2 ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSG--GERQT---------PEWYKEKGIEMIYQDPVT   70 (414)
Q Consensus         2 ~~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~--~~~~~---------~~~~~~~~i~~~~~~~V~   70 (414)
                      ++++||||++|+++||+||+|||.++............+....+.+  ...++         ...+++.||+++++++|+
T Consensus        28 ~~~~I~li~~e~~~py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gI~~~~g~~V~  107 (213)
T d1m6ia1          28 PGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVV  107 (213)
T ss_dssp             TTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGGGSBCTTTTTTSTTCEEEEEETCCEE
T ss_pred             CCCcEEEEeCCCCCCccccccceecccccCchhhhhhhhhhcccchhhhhcCChhhhhhhhhHHHHHHCCeEEEeCCEEE
Confidence            4689999999999999999999977654221100000000001110  01122         233467899999999999


Q ss_pred             EEeCCCCEEEeCCCcEEecCeEEEccCCCCCC
Q 014997           71 SIDIEKQTLITNSGKLLKYGSLIVATGCTASR  102 (414)
Q Consensus        71 ~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~  102 (414)
                      +||.+.++|++++|+++.||+||+|||+.+..
T Consensus       108 ~id~~~~~V~l~dG~~i~~d~lViAtG~~~~~  139 (213)
T d1m6ia1         108 QLDVRDNMVKLNDGSQITYEKCLIATGGTEPN  139 (213)
T ss_dssp             EEEGGGTEEEETTSCEEEEEEEEECCCEEEEC
T ss_pred             EeeccCceeeeccceeeccceEEEeeeeecch
Confidence            99999999999999999999999999987654

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=4.3e-12  Score=106.21  Aligned_cols=122  Identities=20%  Similarity=0.220  Sum_probs=87.1

Q ss_pred             CCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCc---------------------
Q 014997          100 ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLD---------------------  158 (414)
Q Consensus       100 ~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~---------------------  158 (414)
                      |+ .|++||.+.+++++..     +.+......+++|+|||||++|+|+|..+++.|.+                     
T Consensus         2 Pr-~p~IpG~d~~~V~~a~-----d~L~~~~~~gkrVvVIGgG~~g~d~a~~~~r~G~~~~~~~~~~~~~~~~~~~~~~~   75 (162)
T d1ps9a2           2 PR-TPPIDGIDHPKVLSYL-----DVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQA   75 (162)
T ss_dssp             EC-CCCCBTTTSTTEEEHH-----HHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSG
T ss_pred             CC-CCCCCCCCCCCeEEHH-----HHhhCccccCCceEEEcCchhHHHHHHHHHHcCCccceeHhhhhhhccCCcchhhh
Confidence            44 4567999999998742     22334456789999999999999999999988854                     


Q ss_pred             ----------------EEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCC-cEEe
Q 014997          159 ----------------TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-STID  221 (414)
Q Consensus       159 ----------------Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g-~~i~  221 (414)
                                      ++.+......+...+...........++..||++++++.+.+++.  ++..  +...+. +.++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~--~gv~--~~~~g~e~~i~  151 (162)
T d1ps9a2          76 GGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDD--DGLH--VVINGETQVLA  151 (162)
T ss_dssp             GGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEET--TEEE--EEETTEEEEEC
T ss_pred             cccccccceeccccceEEEEEeccchhccccchhhhHHHHHHHhhCCeEEEeeeEEEEEcC--CCCE--EecCCeEEEEE
Confidence                            334433333333334555566777889999999999999999973  4432  222322 3599


Q ss_pred             cCEEEEccCC
Q 014997          222 ADTIVIGIGA  231 (414)
Q Consensus       222 ~D~vi~a~G~  231 (414)
                      ||.||+|+|.
T Consensus       152 aD~Vv~A~Gq  161 (162)
T d1ps9a2         152 VDNVVICAGQ  161 (162)
T ss_dssp             CSEEEECCCE
T ss_pred             CCEEEECCCC
Confidence            9999999995

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.30  E-value=5.5e-11  Score=106.28  Aligned_cols=161  Identities=20%  Similarity=0.306  Sum_probs=111.7

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc-------------------------------------------
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------------------------------------------  171 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-------------------------------------------  171 (414)
                      .|+|||+|++|+.+|..|++.|.+|+++++.+.+..+                                           
T Consensus         4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNEDI   83 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHHHH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhhhhhhhHHH
Confidence            5899999999999999999999999999987432100                                           


Q ss_pred             ------------------c-----cCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEc
Q 014997          172 ------------------L-----FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG  228 (414)
Q Consensus       172 ------------------~-----~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a  228 (414)
                                        .     ....+.+.+.+.+++.||+++++++|+++..+ ++.+..+.+++|+.+.||.||+|
T Consensus        84 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~-~~~~~~v~~~~g~~i~a~~vI~A  162 (251)
T d2i0za1          84 ITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYE-NGQTKAVILQTGEVLETNHVVIA  162 (251)
T ss_dssp             HHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTCCEEECSCEEEC
T ss_pred             HHHHHhcCCccccccccceecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEE-CCEEEEEEeCCCCeEecCeEEEc
Confidence                              0     00123455667778899999999999999864 56677789999999999999999


Q ss_pred             cCCcC--CC-------hhhhhcCCcccC---CCEEEc----CCC-CCCCCcEEEEccccccCCccCCcccccccHHHHHH
Q 014997          229 IGAKP--TV-------SPFERVGLNSSV---GGIQVD----GQF-RTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ  291 (414)
Q Consensus       229 ~G~~p--~~-------~~l~~~gl~~~~---g~i~vd----~~~-~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~  291 (414)
                      +|...  .+       .++++.+.....   ..+.++    ..+ .+..|++|++|++........|.     ....|..
T Consensus       163 tGg~S~p~~Gs~g~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~l~~~~~~gG~-----~~~~a~~  237 (251)
T d2i0za1         163 VGGKSVPQTGSTGDGYAWAEKAGHTITELFGGGVSVKEINPKEMSSKFTNGLYFCGEVLDIHGYTGGY-----NITSALV  237 (251)
T ss_dssp             CCCSSSGGGSCSSHHHHHHHHTTCCEEEEEEEEECGGGEETTTTEESSSBTEEECGGGBSCBCCTTTH-----HHHHHHH
T ss_pred             cCCccccccCCCcccchhcccceeeeeeeeecccCccccCchhHHHhcCCCcEeeeeEEEccCCcchH-----HHHHHHH
Confidence            99753  22       256666665421   111111    122 24779999999998654433222     2344666


Q ss_pred             HHHHHHHHHh
Q 014997          292 SAQHCIKALL  301 (414)
Q Consensus       292 ~a~~aa~~i~  301 (414)
                      .|+.++..+.
T Consensus       238 ~G~~a~~~~~  247 (251)
T d2i0za1         238 TGRIAGTTAG  247 (251)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777766553

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.29  E-value=2e-11  Score=109.79  Aligned_cols=164  Identities=15%  Similarity=0.251  Sum_probs=112.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc-----------------------------------------
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----------------------------------------  171 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----------------------------------------  171 (414)
                      ...|+|||+|+.|+-+|..|+++|.+|+|+++.+.+..+                                         
T Consensus         4 ~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l~~~~~~~~   83 (253)
T d2gqfa1           4 YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDF   83 (253)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHH
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceEecCCccccccCcccCchhhhccChHHHHHHhhhhcccch
Confidence            357999999999999999999999999999987543100                                         


Q ss_pred             ----------------------ccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCc-EEEEEeCCCcEEecCEEEEc
Q 014997          172 ----------------------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR-VAAVKLEDGSTIDADTIVIG  228 (414)
Q Consensus       172 ----------------------~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~-~~~v~~~~g~~i~~D~vi~a  228 (414)
                                            .-..++.+.+.+.+++.||++++++.|+++...+++. +..+...++.++.||.||+|
T Consensus        84 ~~~~~~~g~~~~~~~~~~~~~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VIiA  163 (253)
T d2gqfa1          84 ISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVA  163 (253)
T ss_dssp             HHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEEC
T ss_pred             hhhhhhcCcceeeecCCccccccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCEEEEc
Confidence                                  0011244556677788899999999999998655542 33345567788999999999


Q ss_pred             cCCcC--CC-------hhhhhcCCcc------cCCCEEE---c-CCCCC-CCCcEEEEccccccCCccCCcccccccHHH
Q 014997          229 IGAKP--TV-------SPFERVGLNS------SVGGIQV---D-GQFRT-RMPGIFAIGDVAAFPLKMYDRTARVEHVDH  288 (414)
Q Consensus       229 ~G~~p--~~-------~~l~~~gl~~------~~g~i~v---d-~~~~t-~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~  288 (414)
                      +|-.+  .+       .++++.++..      ..|++.+   | ..|+. ..|++|.+|-+.......-|.     ..+.
T Consensus       164 tGG~S~p~~G~~g~g~~~a~~~~~~i~~~~~~~~ggv~~~~i~~~t~es~~~~gl~~~ge~ldv~g~~gg~-----n~~~  238 (253)
T d2gqfa1         164 TGGLSMPGLGATPFGYQIAEQFGIPVIPPRAVTMGGVDTKVISSKTMESNQVSGLYFIGEVLDVTGWLGGY-----NFQW  238 (253)
T ss_dssp             CCCSSCGGGTCCSHHHHHHHHTTCCEEEEEEEEEEEECGGGBCTTTCBBSSSTTEEECGGGBSCEECTTTH-----HHHH
T ss_pred             CCcccccccCCCchHHHHHHhccccccccccccCCCCcccccCccchhhhcCCCcEEeeeEEEeeeecCCE-----ehhh
Confidence            99653  22       2456666654      2245543   3 24665 689999999877654332221     2233


Q ss_pred             HHHHHHHHHHHHh
Q 014997          289 ARQSAQHCIKALL  301 (414)
Q Consensus       289 A~~~a~~aa~~i~  301 (414)
                      |...|..|++.|.
T Consensus       239 a~~s~~~~~~~~~  251 (253)
T d2gqfa1         239 AWSSAYACALSIS  251 (253)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHh
Confidence            6777777777765

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.21  E-value=1.3e-10  Score=92.53  Aligned_cols=110  Identities=18%  Similarity=0.263  Sum_probs=88.6

Q ss_pred             CCCEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCc
Q 014997          111 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV  190 (414)
Q Consensus       111 ~~gv~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv  190 (414)
                      -.|++++.      .....+.++|+|+|||+|.+++|.|..|++...+|++++|++.+-   .++...+.+.+..+..+|
T Consensus        11 gkgV~yca------~cD~~~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~---~~~~~~~~~~~~~~~~~i   81 (126)
T d1trba2          11 GRGVSACA------TSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR---AEKILIKRLMDKVENGNI   81 (126)
T ss_dssp             TTTEESCH------HHHGGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC---CCHHHHHHHHHHHHTSSE
T ss_pred             CCCEEEEE------ecchHHhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccccc---chhHHHHHHHHhhcccce
Confidence            36777642      233345689999999999999999999999999999999998653   356777777777788999


Q ss_pred             EEEcCceEEEEEecCCCcEEEEEeCCC------cEEecCEEEEccC
Q 014997          191 KFVKGASIKNLEAGSDGRVAAVKLEDG------STIDADTIVIGIG  230 (414)
Q Consensus       191 ~i~~~~~v~~i~~~~~~~~~~v~~~~g------~~i~~D~vi~a~G  230 (414)
                      .++.++.+.++..+ +..+..|++.|.      +++++|-+++++|
T Consensus        82 ~~~~~~~v~~i~G~-~~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG  126 (126)
T d1trba2          82 ILHTNRTLEEVTGD-QMGVTGVRLRDTQNSDNIESLDVAGLFVAIG  126 (126)
T ss_dssp             EEECSCEEEEEEEC-SSSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred             eEecceEEEEEECC-CCceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence            99999999999864 445777777542      3699999999987

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.12  E-value=2.4e-10  Score=102.83  Aligned_cols=138  Identities=22%  Similarity=0.372  Sum_probs=87.5

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccc----------------------------------cC------
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL----------------------------------FT------  174 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~----------------------------------~~------  174 (414)
                      .++|||+|+.|+.+|..++++|.+|.++++.. +-..+                                  ++      
T Consensus         3 DviVIG~G~aG~~aA~~aa~~G~~V~liE~~~-~GGtc~n~gciPsK~l~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~   81 (259)
T d1onfa1           3 DLIVIGGGSGGMAAARRAARHNAKVALVEKSR-LGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPLLVE   81 (259)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-TTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHHHHHH
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCeEEEEecCC-CCCeEEeeCCcchHHHHhhhhcccchhccccccccchhhhhhhhHHh
Confidence            48999999999999999999999999999752 11000                                  00      


Q ss_pred             ------HHHHHHHHHHHHhCCcEEEcCce-EE-----EEEecCCCcEEEEEeCCCcEEecCEEEEccCCcC-----CChh
Q 014997          175 ------PSLAQRYEQLYQQNGVKFVKGAS-IK-----NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP-----TVSP  237 (414)
Q Consensus       175 ------~~~~~~~~~~l~~~gv~i~~~~~-v~-----~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p-----~~~~  237 (414)
                            ..+...+...+++.||+++.+.. +.     .+....+.........+++.+.+|.|++|||.+|     +.+.
T Consensus        82 ~~~~~i~~~~~~~~~~l~~~gV~vi~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~i~a~~iiIATGs~P~~~~~~~~~  161 (259)
T d1onfa1          82 RRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVGRSPDTEN  161 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECCCCCBCCBCCTTTT
T ss_pred             hhheeeeccccchhhhcccccceEEeeecccccccccccccceeccccccCccceEEEeeeeEEEecCCCCccccccccc
Confidence                  11223345667889999987642 11     1111101000011112345799999999999998     3332


Q ss_pred             --hhhcCCcccCCCEEEcCCCCCCCCcEEEEccccccC
Q 014997          238 --FERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFP  273 (414)
Q Consensus       238 --l~~~gl~~~~g~i~vd~~~~t~~~~IyA~GD~a~~~  273 (414)
                        +++.++..+++.+.+|+..+|.+.++|++||++...
T Consensus       162 ~~l~~~~i~ts~~~~~~d~~~~t~Vig~gaiGdv~~~~  199 (259)
T d1onfa1         162 LKLEKLNVETNNNYIVVDENQRTSVNNIYAVGDCCMVK  199 (259)
T ss_dssp             SSCTTTTCCBSSSCEEECTTCBCSSSSEEECSTTEEEC
T ss_pred             cccccceeeecccccccccCCceeEeeEEEEEEeeehh
Confidence              345566666788999999999999999999998643

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.10  E-value=5.6e-11  Score=102.03  Aligned_cols=134  Identities=20%  Similarity=0.226  Sum_probs=87.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCC-cEEEEeeCCccccc--------ccCHHHHHHHHHHHHhCCcEEEcCceEEEEE
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLE  202 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~l~~--------~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~  202 (414)
                      .++||+|||||++|+++|..|+++|. +|+++++.+.+...        .................+..+.....+....
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   82 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSENE   82 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBSTTS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhhhhccccccccccccchhhhhhccceeEEeeEEeccce
Confidence            47899999999999999999999998 59999999876431        1233444555555667778887765542111


Q ss_pred             ecCCCcEEEEEeCCCcEEecCEEEEccCCcCCCh--hhh-h-cCCcc-cCCCEEEc-CCCCCCCCcEEEEccccccCC
Q 014997          203 AGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS--PFE-R-VGLNS-SVGGIQVD-GQFRTRMPGIFAIGDVAAFPL  274 (414)
Q Consensus       203 ~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~--~l~-~-~gl~~-~~g~i~vd-~~~~t~~~~IyA~GD~a~~~~  274 (414)
                               ..+.+..+..++.+++++|..+...  ... . ..... ..+....+ ..++|+.+.||++||++...+
T Consensus        83 ---------~~~~~~~~~~~~~~~ia~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~vigg~~  151 (196)
T d1gtea4          83 ---------ITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMAN  151 (196)
T ss_dssp             ---------BCHHHHHHTTCCEEEECCCCCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCSSTTEEECSGGGCSCC
T ss_pred             ---------eeeehhhccccceeeEEeccccCCccccccccccccccccccceeccccccCCCcccccccccccCCcc
Confidence                     0111223355788999988654322  111 1 11111 22444444 468899999999999986543

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.10  E-value=2.4e-11  Score=111.29  Aligned_cols=102  Identities=13%  Similarity=0.134  Sum_probs=62.4

Q ss_pred             CcEEEcCceEEEEEecCCCc----EEEEEe-----CCCcEEecCEEEEccCCcCCC-------------hhhhhc-CCcc
Q 014997          189 GVKFVKGASIKNLEAGSDGR----VAAVKL-----EDGSTIDADTIVIGIGAKPTV-------------SPFERV-GLNS  245 (414)
Q Consensus       189 gv~i~~~~~v~~i~~~~~~~----~~~v~~-----~~g~~i~~D~vi~a~G~~p~~-------------~~l~~~-gl~~  245 (414)
                      +.++++++.|++|....++.    ...+..     .+++.+++|.||++++...-.             +.+... +...
T Consensus       243 ~~~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~Vi~a~p~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  322 (373)
T d1seza1         243 EDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLLNFIPEVYGHNY  322 (373)
T ss_dssp             TTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHHTSEEESSSSBCCCTTSCCCCCTTH
T ss_pred             cceEecCCEEEEEEEeCCcccccccceEEecccCCCCceEEECCEEEECCchHHhhhcccccCCCccchhhhccccccCC
Confidence            56789999999997543321    112222     234679999999998742210             001000 0000


Q ss_pred             cCCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997          246 SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       246 ~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                       +..+.+++.++|+.|+||++||+...+           ....|..+|..||..|+.
T Consensus       323 -~~~~~~~~~~~t~~pglf~aGd~~~g~-----------~~~~A~~~G~~aA~~i~~  367 (373)
T d1seza1         323 -DSVLDAIDKMEKNLPGLFYAGNHRGGL-----------SVGKALSSGCNAADLVIS  367 (373)
T ss_dssp             -HHHHHHHHHHHHHSTTEEECCSSSSCS-----------SHHHHHHHHHHHHHHHHH
T ss_pred             -CcEeecccccCCCCCCEEEEecCCCch-----------hHHHHHHHHHHHHHHHHH
Confidence             112334456788999999999997632           345688888888888874

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.07  E-value=9.5e-10  Score=102.04  Aligned_cols=98  Identities=20%  Similarity=0.223  Sum_probs=73.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc-------------------------------------------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------------------------------------------  170 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------------------  170 (414)
                      -.|+|||+|..|+-+|..|++.|.+|.|+++.+..-.                                           
T Consensus        24 ~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG~s~~s~Ggi~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~d~  103 (322)
T d1d4ca2          24 TDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNINDP  103 (322)
T ss_dssp             CSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCH
T ss_pred             ceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCCcccccCchhhhhcccCCCHHHHHHHHHhccccccCH
Confidence            4699999999999999999999999999997632100                                           


Q ss_pred             --------------------------------------------cccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCC
Q 014997          171 --------------------------------------------RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD  206 (414)
Q Consensus       171 --------------------------------------------~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~  206 (414)
                                                                  ......+...+.+.+.++|+++++++.++++..+++
T Consensus       104 ~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~i~~~t~v~~li~d~~  183 (322)
T d1d4ca2         104 ELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDAS  183 (322)
T ss_dssp             HHHHHHHHTHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCSHHHHHHHHHHHHHHTTCEEETTEEEEEEECCSS
T ss_pred             HHhhhhhhhhhhhhhhhhhhcccccccccccccccccccccccccchhHHHHHHHHHHHHhcCceEEEeeeccccccccc
Confidence                                                        000112344555666788999999999999987777


Q ss_pred             CcEEEEEeC--CC--cEEecCEEEEccCC
Q 014997          207 GRVAAVKLE--DG--STIDADTIVIGIGA  231 (414)
Q Consensus       207 ~~~~~v~~~--~g--~~i~~D~vi~a~G~  231 (414)
                      +++..|...  ++  ..+.++.||+|+|-
T Consensus       184 G~V~Gv~~~~~~~~~~~i~Ak~VIlAtGG  212 (322)
T d1d4ca2         184 GKVTGVLVKGEYTGYYVIKADAVVIAAGG  212 (322)
T ss_dssp             SCCCEEEEEETTTEEEEEECSEEEECCCC
T ss_pred             ccccceEEEeecccEEEEeCCeEEEcCCC
Confidence            877766553  22  25899999999984

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.05  E-value=1.4e-09  Score=86.36  Aligned_cols=108  Identities=25%  Similarity=0.371  Sum_probs=81.5

Q ss_pred             CCCEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCc
Q 014997          111 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV  190 (414)
Q Consensus       111 ~~gv~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv  190 (414)
                      ..|++++.      .+...+-++|+|+|||+|.++++.|..|++...+|++++|++.+-.   .+..   ..+..+..+|
T Consensus        14 gkGV~yca------~cD~~~~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~---~~~~---~~~~~~~~~I   81 (126)
T d1fl2a2          14 TKGVTYCP------HCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA---DQVL---QDKLRSLKNV   81 (126)
T ss_dssp             TTTEESCH------HHHGGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCS---CHHH---HHHHHTCTTE
T ss_pred             CCCEEEEE------ecChhhcCCceEEEEeCCHHHHHHHHhhhccCCceEEEeccccccc---cccc---ccccccccce
Confidence            36788752      2333466899999999999999999999999999999999886532   2322   2233334579


Q ss_pred             EEEcCceEEEEEecCCCcEEEEEeCC---C--cEEecCEEEEccCC
Q 014997          191 KFVKGASIKNLEAGSDGRVAAVKLED---G--STIDADTIVIGIGA  231 (414)
Q Consensus       191 ~i~~~~~v~~i~~~~~~~~~~v~~~~---g--~~i~~D~vi~a~G~  231 (414)
                      ++++++++.++..+ ++.+..+++.+   |  +++++|.+++++|.
T Consensus        82 ~v~~~~~v~~i~G~-~~~v~~v~l~~~~tge~~~l~vdgvFv~IGl  126 (126)
T d1fl2a2          82 DIILNAQTTEVKGD-GSKVVGLEYRDRVSGDIHNIELAGIFVQIGL  126 (126)
T ss_dssp             EEESSEEEEEEEES-SSSEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred             eEEcCcceEEEEcc-ccceeeEEEEECCCCCEEEEECCEEEEEeCC
Confidence            99999999999854 34577777643   4  36999999999984

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.03  E-value=2.6e-10  Score=105.73  Aligned_cols=108  Identities=11%  Similarity=0.179  Sum_probs=64.3

Q ss_pred             HHhCCcEEEcCceEEEEEecCCCcEEEEEe--CCCcEEecCEEEEccCCc--------CCChhhh-hc--CCcccCCCEE
Q 014997          185 YQQNGVKFVKGASIKNLEAGSDGRVAAVKL--EDGSTIDADTIVIGIGAK--------PTVSPFE-RV--GLNSSVGGIQ  251 (414)
Q Consensus       185 l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~--~~g~~i~~D~vi~a~G~~--------p~~~~l~-~~--gl~~~~g~i~  251 (414)
                      +++.|+++++++.|++|..++++....+..  .++++++||.||+|++..        |.....+ ++  .+........
T Consensus       245 ~~~~g~~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~aD~VI~A~p~~~l~~i~~~p~l~~~~~~ai~~~~~~~~~~~  324 (370)
T d2iida1         245 YRDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLIKFNPPLLPKKAHALRSVFTPYQFQH  324 (370)
T ss_dssp             HHHTGGGEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHHHHTTSEEESCCCHHHHHHHHHCCCTTHHHH
T ss_pred             HHhcCCccccCceEEEEEEeCCeEEEEEEecCCCeEEEEeeEEEecCCHHHHhhCccCCCCCHHHHHHHHhcCCcccccc
Confidence            467799999999999998765554323333  345689999999998632        2211100 00  0000000011


Q ss_pred             EcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 014997          252 VDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  301 (414)
Q Consensus       252 vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~  301 (414)
                      .+..+.+...+||++||++..+..         .+..|+..|..||.+|.
T Consensus       325 ~~~~~~~~~g~v~~aGd~~~~~~~---------~~~~a~~sG~~aA~~i~  365 (370)
T d2iida1         325 FSDPLTASQGRIYFAGEYTAQAHG---------WIDSTIKSGLRAARDVN  365 (370)
T ss_dssp             HHHHHHCCBTTEEECSGGGSSSSS---------CHHHHHHHHHHHHHHHH
T ss_pred             cchhhhcccCCEEEecccccCCCc---------ccHHHHHHHHHHHHHHH
Confidence            112223344679999998865421         34568899999998875

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.93  E-value=3.7e-09  Score=86.77  Aligned_cols=94  Identities=22%  Similarity=0.383  Sum_probs=66.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCc-EEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEE
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  210 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~-Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~  210 (414)
                      .+++|+|||||.+|+|+|..+.++|.+ |++++|++..-.. ..+    .-...+...+++++.+..+.++... ++...
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~~~~-a~~----~~~~~a~~~~~~~~~~~~~~ei~~~-~~~~~  117 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIR-AVP----EEVELAKEEKCEFLPFLSPRKVIVK-GGRIV  117 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCC-SCH----HHHHHHHHTTCEEECSEEEEEEEEE-TTEEE
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCChhhhc-cch----hheeecccccceeEeccccEEEEec-CCceE
Confidence            357899999999999999999999865 8888887653321 111    2223456778999999888888753 44433


Q ss_pred             EEEe------CCC---------cEEecCEEEEccCC
Q 014997          211 AVKL------EDG---------STIDADTIVIGIGA  231 (414)
Q Consensus       211 ~v~~------~~g---------~~i~~D~vi~a~G~  231 (414)
                      .+..      ++|         .+++||.||+|+|.
T Consensus       118 ~v~~~~~e~d~~G~~~~~~g~e~~i~aD~V~~AiG~  153 (153)
T d1gtea3         118 AVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGS  153 (153)
T ss_dssp             EEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCE
T ss_pred             EEEEEEeeECCCCCEecCCCCEEEEECCEEEECcCc
Confidence            3322      222         36999999999983

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.93  E-value=9.9e-10  Score=92.58  Aligned_cols=89  Identities=17%  Similarity=0.214  Sum_probs=70.8

Q ss_pred             cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc----------ccCHHHHHHHHHHHHhCCcEEEcCceEEE
Q 014997          131 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------LFTPSLAQRYEQLYQQNGVKFVKGASIKN  200 (414)
Q Consensus       131 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~----------~~~~~~~~~~~~~l~~~gv~i~~~~~v~~  200 (414)
                      ..+|+|+|||+|+.|+++|..|+++|++|+++++.+.+-..          ....++.+++.+.+++.||++++|+.|+.
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~Vt~  120 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTA  120 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCCS
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCCEEcc
Confidence            46799999999999999999999999999999998765321          11235667788888999999999987631


Q ss_pred             EEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCC
Q 014997          201 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  235 (414)
Q Consensus       201 i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~  235 (414)
                                     + ....+|.||+|+|..|..
T Consensus       121 ---------------~-~~~~~d~vilAtG~~~~~  139 (179)
T d1ps9a3         121 ---------------D-QLQAFDETILASGIPNRA  139 (179)
T ss_dssp             ---------------S-SSCCSSEEEECCCEECCT
T ss_pred             ---------------c-ccccceeEEEeecCCCcc
Confidence                           1 124689999999998764

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.89  E-value=9.6e-09  Score=81.67  Aligned_cols=106  Identities=15%  Similarity=0.235  Sum_probs=78.9

Q ss_pred             CCEEEecCHHHHHHHHH--hhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCC
Q 014997          112 PGVHYIRDVADADALIS--SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNG  189 (414)
Q Consensus       112 ~gv~~~~~~~~~~~~~~--~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~g  189 (414)
                      .|++|+-      .+..  .+-++|+|+|||||.+++|-|..|++...+|++++|++.+-.   .+.   .+.+..+..+
T Consensus        17 kGVsyca------~CDg~a~~frgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra---~~~---~~~~l~~~~n   84 (130)
T d1vdca2          17 RGISACA------VCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA---SKI---MQQRALSNPK   84 (130)
T ss_dssp             TTEESCH------HHHTTSGGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS---CHH---HHHHHHTCTT
T ss_pred             CcEEEEE------EecCchHHhCCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccccc---chh---hhhccccCCc
Confidence            6887752      2222  256899999999999999999999999999999999986643   222   2334445567


Q ss_pred             cEEEcCceEEEEEecCC-CcEEEEEeC---CC--cEEecCEEEEcc
Q 014997          190 VKFVKGASIKNLEAGSD-GRVAAVKLE---DG--STIDADTIVIGI  229 (414)
Q Consensus       190 v~i~~~~~v~~i~~~~~-~~~~~v~~~---~g--~~i~~D~vi~a~  229 (414)
                      |++++++++.++..++. +.+..+.+.   +|  +++++|-+++++
T Consensus        85 I~v~~~~~v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGvFVaI  130 (130)
T d1vdca2          85 IDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAI  130 (130)
T ss_dssp             EEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECS
T ss_pred             eEEEeccEEEEEEccCCcccEEEEEEEECCCCCEEEEECCEEEEEC
Confidence            99999999999986532 346566553   23  579999999874

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=98.88  E-value=5.3e-10  Score=101.79  Aligned_cols=103  Identities=19%  Similarity=0.294  Sum_probs=62.2

Q ss_pred             HhCCcEEEcCceEEEEEecCCCcEEEEEeCCC--cEEecCEEEEccCCcCCChhhhhc---------CCcccCCC---EE
Q 014997          186 QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERV---------GLNSSVGG---IQ  251 (414)
Q Consensus       186 ~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~~l~~~---------gl~~~~g~---i~  251 (414)
                      ++.|++|++++.|++|+.++++.. .+...+|  ++++||.||+|+|......++...         ++.. .+.   +.
T Consensus       230 ~~~g~~i~~~~~V~~I~~~~~~~~-v~~~~~~~~~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~-~~~~~~~~  307 (347)
T d2ivda1         230 ASLGDAAHVGARVEGLAREDGGWR-LIIEEHGRRAELSVAQVVLAAPAHATAKLLRPLDDALAALVAGIYN-LGHLERVA  307 (347)
T ss_dssp             HHHGGGEESSEEEEEEECC--CCE-EEEEETTEEEEEECSEEEECSCHHHHHHHHTTTCHHHHHHHHTCCB-TTHHHHHH
T ss_pred             HHhhcccccCCEEEEEEEeCCeEE-EEEEcCCeEEEEECCEEEECCCHHHHHHhccCCCHHHHHHhhccee-cCccccee
Confidence            445889999999999987644432 2233343  469999999999854222222221         1111 111   11


Q ss_pred             EcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 014997          252 VDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  301 (414)
Q Consensus       252 vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~  301 (414)
                      ..+...++.|++|++||.....           ....+..+|..+|+.|+
T Consensus       308 ~~~~~~~~~p~~~~~G~~~~g~-----------~~~~~~~~g~~~a~~~~  346 (347)
T d2ivda1         308 AIDAALQRLPGLHLIGNAYKGV-----------GLNDCIRNAAQLADALV  346 (347)
T ss_dssp             HHHHHHHTSTTEEECSTTTSCC-----------SHHHHHHHHHHHHHHHC
T ss_pred             cccccccCCCCEEEecccccCC-----------CHHHHHHHHHHHHHHhh
Confidence            1122236789999999975532           34567888888888775

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.83  E-value=4.6e-08  Score=89.61  Aligned_cols=97  Identities=18%  Similarity=0.206  Sum_probs=72.7

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc--------------------------------------cccC--
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------------------------------------RLFT--  174 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~--------------------------------------~~~~--  174 (414)
                      .|+|||+|..|+-+|..|++.|.+|+|+++.+..-.                                      ...+  
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG~s~~s~G~~~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~   97 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPA   97 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCHH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcceecCCCCccccchhhhhhhccchHHHHHHHHHhhhhhccchH
Confidence            699999999999999999999999999998632100                                      0000  


Q ss_pred             -----------------------------------------------HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCC
Q 014997          175 -----------------------------------------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG  207 (414)
Q Consensus       175 -----------------------------------------------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~  207 (414)
                                                                     ..+...+.+.+++.|++++.++.++++..+++|
T Consensus        98 lv~~~~~~~~~~i~~L~~~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~i~~~~~v~~li~~~~G  177 (308)
T d1y0pa2          98 LVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKG  177 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEECTTS
T ss_pred             HHHHHHHhhhHHHHHHHHcCCCccccccccccccccccccccccchHHHHHHHHHHHHHhccceEEEeeccchhhhhccc
Confidence                                                           112333445567789999999999998777778


Q ss_pred             cEEEEEeCC--C--cEEecCEEEEccCC
Q 014997          208 RVAAVKLED--G--STIDADTIVIGIGA  231 (414)
Q Consensus       208 ~~~~v~~~~--g--~~i~~D~vi~a~G~  231 (414)
                      ++..|...+  +  ..+.++.||+|+|-
T Consensus       178 ~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG  205 (308)
T d1y0pa2         178 TVKGILVKGMYKGYYWVKADAVILATGG  205 (308)
T ss_dssp             CEEEEEEEETTTEEEEEECSEEEECCCC
T ss_pred             ccccccccccccceeEeecCeEEEccCc
Confidence            888777643  2  26899999999994

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.82  E-value=2.4e-08  Score=91.26  Aligned_cols=99  Identities=13%  Similarity=0.181  Sum_probs=79.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc----------------------------------ccc--CHHH
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------------------RLF--TPSL  177 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~----------------------------------~~~--~~~~  177 (414)
                      -+|+|||+|++|+-+|..|++.|.+|+++++.+.+-.                                  ..+  .+++
T Consensus         8 ~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~p~~~e~   87 (298)
T d1w4xa1           8 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEI   87 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHH
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCccccCccchH
Confidence            4699999999999999999999999999998744310                                  000  1356


Q ss_pred             HHHHHHHHHhCCc--EEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCc
Q 014997          178 AQRYEQLYQQNGV--KFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  232 (414)
Q Consensus       178 ~~~~~~~l~~~gv--~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~  232 (414)
                      .+++++..++.++  .+.++++|++++.+++...-.|.+.++.++.||.+|+|+|.-
T Consensus        88 ~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~l  144 (298)
T d1w4xa1          88 LRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQL  144 (298)
T ss_dssp             HHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSC
T ss_pred             HHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeeccc
Confidence            6778888888898  599999999998655555557889999999999999999963

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.82  E-value=4.2e-09  Score=93.66  Aligned_cols=104  Identities=15%  Similarity=0.219  Sum_probs=64.3

Q ss_pred             CCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcC----------CChhhhhcCCcccCCCEEEc----
Q 014997          188 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP----------TVSPFERVGLNSSVGGIQVD----  253 (414)
Q Consensus       188 ~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p----------~~~~l~~~gl~~~~g~i~vd----  253 (414)
                      .+..+..++.+..+....+.  ..|.+.+|+.+.+|.++++.+...          ...-.+...+. ..+...++    
T Consensus       223 ~~~~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~~d~~~~~~~~~~l~~~~~~~~p~l~~~~~~ai~-~~~~~~~~~~~~  299 (347)
T d1b5qa1         223 VDPRLQLNKVVREIKYSPGG--VTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIY-QFWPVGVNRYEY  299 (347)
T ss_dssp             CCTTEESSCCEEEEEECSSC--EEEEETTSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHH-HSCBTTCCHHHH
T ss_pred             cccccccccccccccccCcc--EEEEECCCCEEEcCEEEeecCHHHHhhcccccCCCCCHHHHHHHH-hcCCccccccch
Confidence            45678888889988765333  358899999999999999865421          11000000000 11111122    


Q ss_pred             CCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997          254 GQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       254 ~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                      +.++++.++||++||++....+.        ....|..+|..+|+.|++
T Consensus       300 ~~~~~~~~~v~~~GD~~~~~~~~--------~~~gA~~sG~~aA~~l~~  340 (347)
T d1b5qa1         300 DQLRAPVGRVYFTGEHTSEHYNG--------YVHGAYLSGIDSAEILIN  340 (347)
T ss_dssp             HHHHCCBTTEEECSGGGCSSCTT--------SHHHHHHHHHHHHHHHHH
T ss_pred             hhcccccCCEEEEEccccCcCCC--------HHHHHHHHHHHHHHHHHH
Confidence            23567889999999998754321        344577888888877764

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.79  E-value=3.4e-08  Score=91.13  Aligned_cols=98  Identities=18%  Similarity=0.274  Sum_probs=73.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc--------------------------------------------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------------------------------------------  169 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l--------------------------------------------  169 (414)
                      -.|+|||+|..|+-+|..+++.|.+|.|+++.+..-                                            
T Consensus        20 ~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~gG~S~~a~Ggi~a~~~~~~~~~g~~d~~~~~~~d~~~~~~~~~d~   99 (317)
T d1qo8a2          20 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQNDI   99 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCH
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCCCcccccchhhhhcccCCcHHHHHHHHHHhhccccch
Confidence            359999999999999999999999999999762110                                            


Q ss_pred             -----------------------------------ccc--------cCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCC
Q 014997          170 -----------------------------------QRL--------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD  206 (414)
Q Consensus       170 -----------------------------------~~~--------~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~  206 (414)
                                                         ++.        ....+...+.+.+++.|+++++++.++++..+++
T Consensus       100 ~lv~~~~~~a~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~g~~~g~~i~~~L~~~~~~~g~~i~~~~~v~~l~~~~~  179 (317)
T d1qo8a2         100 KLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDD  179 (317)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECTT
T ss_pred             hHHHHHHhhhhhhhhhHHHhhhcccccccccCcccccccccccccccchhhhHHHHHHhhhccceeeeccchhheeeccc
Confidence                                               000        0112445566667889999999999999876678


Q ss_pred             CcEEEEEeC--CCc--EEecCEEEEccCC
Q 014997          207 GRVAAVKLE--DGS--TIDADTIVIGIGA  231 (414)
Q Consensus       207 ~~~~~v~~~--~g~--~i~~D~vi~a~G~  231 (414)
                      +++..+...  +++  .+.++.||+|+|-
T Consensus       180 g~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG  208 (317)
T d1qo8a2         180 HSVVGAVVHGKHTGYYMIGAKSVVLATGG  208 (317)
T ss_dssp             SBEEEEEEEETTTEEEEEEEEEEEECCCC
T ss_pred             ccceeeEeecccceEEEEeccceEEeccc
Confidence            888766553  342  5889999999994

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=98.70  E-value=3.7e-08  Score=88.56  Aligned_cols=69  Identities=20%  Similarity=0.364  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhcCCcccCCC
Q 014997          177 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGG  249 (414)
Q Consensus       177 ~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~g~  249 (414)
                      +...+.+.+++.|++++.+++|++|..+  +....|.+++| ++.||.||+|+|.-.. .+++.+|+...++.
T Consensus       153 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~--~~~~~V~t~~g-~i~a~~vV~AaG~~s~-~l~~~~G~~~~~~~  221 (276)
T d1ryia1         153 VCKAYVKAAKMLGAEIFEHTPVLHVERD--GEALFIKTPSG-DVWANHVVVASGVWSG-MFFKQLGLNNADGK  221 (276)
T ss_dssp             HHHHHHHHHHHTTCEEETTCCCCEEECS--SSSEEEEETTE-EEEEEEEEECCGGGTH-HHHHHTTCCCCSSC
T ss_pred             chhHHHHHHHHcCCEEecceEEEeEEee--cceEEEecCCe-EEEcCEEEECCCccHH-HHHhhcCCCccccc
Confidence            3445566678899999999999999854  34457888887 6999999999997654 57888888764443

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=98.67  E-value=6.2e-08  Score=88.52  Aligned_cols=66  Identities=24%  Similarity=0.328  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhcCCcc
Q 014997          177 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNS  245 (414)
Q Consensus       177 ~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~  245 (414)
                      +...+.+.+++.|++++.+++|+++... ++++..|.+++| ++.||.||+|+|.-.+ .+++..|+..
T Consensus       150 l~~~l~~~a~~~gv~i~~~~~V~~i~~~-~~~v~~V~T~~g-~i~a~~VV~aaG~~s~-~l~~~~g~~l  215 (305)
T d1pj5a2         150 AVQLLIKRTESAGVTYRGSTTVTGIEQS-GGRVTGVQTADG-VIPADIVVSCAGFWGA-KIGAMIGMAV  215 (305)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTE-EEECSEEEECCGGGHH-HHHHTTTCCC
T ss_pred             hhhhHHhhhhcccccccCCceEEEEEEe-CCEEEEEeccce-eEECCEEEEecchhHH-HHHHHcCCcc
Confidence            4455666678899999999999999865 667778888877 6999999999997654 5666666543

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.65  E-value=1.5e-07  Score=87.25  Aligned_cols=100  Identities=18%  Similarity=0.120  Sum_probs=71.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCC--CcEEEEeeCCcccc----------------------------------------
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQ----------------------------------------  170 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l~----------------------------------------  170 (414)
                      -|+|+|||+|++|+-+|..|++.+  .+|+++++++.+-.                                        
T Consensus         4 ~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~y   83 (335)
T d2gv8a1           4 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLY   83 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCCC
T ss_pred             CCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCcccCCcccccccccccccccccccccccccc
Confidence            489999999999999999998876  58999999865410                                        


Q ss_pred             -----------------------ccc--CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEe-CCCc---EEe
Q 014997          171 -----------------------RLF--TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL-EDGS---TID  221 (414)
Q Consensus       171 -----------------------~~~--~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~-~~g~---~i~  221 (414)
                                             ..+  ..++.+.+....++.+..++++++|++++..++...+.+.. +.++   ...
T Consensus        84 ~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~~~w~Vt~~~~~~~~~~~~~~  163 (335)
T d2gv8a1          84 RDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDI  163 (335)
T ss_dssp             TTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEEEE
T ss_pred             hhhhcCCcHhhhhhhhhcCCcccccCCchHHHHHHHHHHHHHhhhcccCceEEEEEEecCCEEEEEEEecCCCCeEEEEE
Confidence                                   000  12455666666666788899999999998764332222222 2222   456


Q ss_pred             cCEEEEccCCc
Q 014997          222 ADTIVIGIGAK  232 (414)
Q Consensus       222 ~D~vi~a~G~~  232 (414)
                      ||.||+|+|..
T Consensus       164 ~d~VI~AtG~~  174 (335)
T d2gv8a1         164 FDAVSICNGHY  174 (335)
T ss_dssp             ESEEEECCCSS
T ss_pred             eeEEEEccccc
Confidence            99999999964

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.65  E-value=8.6e-07  Score=81.79  Aligned_cols=92  Identities=20%  Similarity=0.303  Sum_probs=64.3

Q ss_pred             HHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEe---CCCc--EEecCEEEEccCCcCCC---------------hhhh
Q 014997          180 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKPTV---------------SPFE  239 (414)
Q Consensus       180 ~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~---~~g~--~i~~D~vi~a~G~~p~~---------------~~l~  239 (414)
                      .+.+..++.|++++.++.+.++..+ ++++..+..   .+|+  .+.++.||+|+|--...               ....
T Consensus       163 ~l~~~~~~~gv~i~~~~~~~~li~~-~~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~~~~~~~t~~~~~~tGdg~~~~~  241 (336)
T d2bs2a2         163 AVANECLKLGVSIQDRKEAIALIHQ-DGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGTAIAL  241 (336)
T ss_dssp             HHHHHHHHHTCEEECSEEEEEEEEE-TTEEEEEEEEETTTCCEEEEECSEEEECCCCCGGGSSSBSSCTTCSCHHHHHHH
T ss_pred             HHHHHHHhccccccceeeeeecccc-cccccceeEEeccCCcEEEEecCeEEEeccccccccccccccccccchhhhhhh
Confidence            3445556779999999999888754 555544433   4564  58899999999854210               1123


Q ss_pred             hcCCc-c-cCCCEEEcCCCCCCCCcEEEEcccccc
Q 014997          240 RVGLN-S-SVGGIQVDGQFRTRMPGIFAIGDVAAF  272 (414)
Q Consensus       240 ~~gl~-~-~~g~i~vd~~~~t~~~~IyA~GD~a~~  272 (414)
                      ..|.. . +-++|.+|..++|+.|++|++||++..
T Consensus       242 ~~G~~~l~~~~~iq~~~~~~t~~~gl~a~G~~~~~  276 (336)
T d2bs2a2         242 ETGIAQLGNMGGIRTDYRGEAKLKGLFSAGEAACW  276 (336)
T ss_dssp             TTSSSCEECCCEEECCTTSBCSSBTEEECGGGEEC
T ss_pred             hhhhhhhccccceeechhhcccCCcceeccccccc
Confidence            34532 2 457899999999999999999998764

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.63  E-value=1.4e-07  Score=82.37  Aligned_cols=127  Identities=19%  Similarity=0.211  Sum_probs=80.3

Q ss_pred             CCCCCCCCCEEEecCHHHHHHHH---Hhh---cCCCeEEEECCChHHHHHHHHHHhC--------------------C-C
Q 014997          105 EKIGGYLPGVHYIRDVADADALI---SSL---EKAKKVVVVGGGYIGMEVAAAAVGW--------------------K-L  157 (414)
Q Consensus       105 ~~~g~~~~gv~~~~~~~~~~~~~---~~~---~~~~~vvVvGgG~~g~e~A~~l~~~--------------------g-~  157 (414)
                      .+||.+++|++...++-..-.-.   ...   ..+++|+|||+|++|++||..|.+.                    | .
T Consensus         5 ~IPGedl~gV~~A~dfl~~~N~~p~~~~~~~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~   84 (225)
T d1cjca1           5 DIPGEELPGVFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVK   84 (225)
T ss_dssp             CCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCC
T ss_pred             CCCCCCCCCcEeHHHHHHHHhCCccccccCccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCC
Confidence            46899999999864332111000   001   1479999999999999999999873                    4 5


Q ss_pred             cEEEEeeCCcccccccCHHHHH-----------------------------------HHHHHH--------------HhC
Q 014997          158 DTTIIFPENHLLQRLFTPSLAQ-----------------------------------RYEQLY--------------QQN  188 (414)
Q Consensus       158 ~Vtlv~~~~~~l~~~~~~~~~~-----------------------------------~~~~~l--------------~~~  188 (414)
                      +|+++.|+...-..+-.+++.+                                   .+.+.+              ...
T Consensus        85 ~V~iv~RRg~~~~~ft~~Elre~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (225)
T d1cjca1          85 TVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRASASR  164 (225)
T ss_dssp             EEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHHTCSE
T ss_pred             eEEEEEEcChHhCCCCchhhhcccccCCCcceechhhhccchhhhhhhhhHHHHHHHHHHHHHHhccccccccccccccc
Confidence            7999998764321111122111                                   111111              124


Q ss_pred             CcEEEcCceEEEEEecCCC-cEEEEEeC---------------CC--cEEecCEEEEccCC
Q 014997          189 GVKFVKGASIKNLEAGSDG-RVAAVKLE---------------DG--STIDADTIVIGIGA  231 (414)
Q Consensus       189 gv~i~~~~~v~~i~~~~~~-~~~~v~~~---------------~g--~~i~~D~vi~a~G~  231 (414)
                      ++.+++.....++..++++ ++..+++.               .|  ..++||+||.|+|+
T Consensus       165 ~i~~~f~~~p~~i~~~~~g~~v~~v~~~~~~~~~~~~~~~~~~tg~~~~ipadlVi~AiGf  225 (225)
T d1cjca1         165 AWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGY  225 (225)
T ss_dssp             EEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCE
T ss_pred             ceEEEeecccccccccCCCCeEEEEEEEEeEECCCCCCCcccCCCcEEEEECCEEEECCCC
Confidence            6889999999999876554 56555431               12  35999999999996

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=98.58  E-value=1.3e-07  Score=85.21  Aligned_cols=66  Identities=18%  Similarity=0.455  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhcCCccc
Q 014997          177 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS  246 (414)
Q Consensus       177 ~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~  246 (414)
                      +...+.+.+++.|++++.+++|+++...+++ + .|.+++| ++.||.||+|+|.-.+ .++..+|+...
T Consensus       152 ~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~-v-~V~t~~g-~i~a~~VViAaG~~s~-~l~~~lg~~~~  217 (281)
T d2gf3a1         152 CIRAYRELAEARGAKVLTHTRVEDFDISPDS-V-KIETANG-SYTADKLIVSMGAWNS-KLLSKLNLDIP  217 (281)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEECSSC-E-EEEETTE-EEEEEEEEECCGGGHH-HHGGGGTEECC
T ss_pred             cccccccccccccccccCCcEEEEEEEECCE-E-EEEECCc-EEEcCEEEECCCCcch-hhHHhcCCccc
Confidence            4455666678899999999999999876443 3 6888887 5999999999997654 57777777654

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=1.4e-07  Score=87.28  Aligned_cols=109  Identities=13%  Similarity=0.157  Sum_probs=66.4

Q ss_pred             HHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCc--------CCCh-hhhhcCCc-ccCCC-EEE
Q 014997          184 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK--------PTVS-PFERVGLN-SSVGG-IQV  252 (414)
Q Consensus       184 ~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~--------p~~~-~l~~~gl~-~~~g~-i~v  252 (414)
                      .+++.|.++++++.|++|..++++ + .|++.||+++.||.||++++..        |... +..+..-. ...+. -..
T Consensus       216 l~~~~g~~i~~~~~v~~I~~~~~~-v-~v~~~~g~~~~ad~vI~a~p~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~  293 (383)
T d2v5za1         216 IMDLLGDRVKLERPVIYIDQTREN-V-LVETLNHEMYEAKYVISAIPPTLGMKIHFNPPLPMMRNQMITRVFPPGILTQY  293 (383)
T ss_dssp             HHHHHGGGEEESCCEEEEECSSSS-E-EEEETTSCEEEESEEEECSCGGGGGGSEEESCCCHHHHHHTTSCCCTTHHHHH
T ss_pred             HHHHcCCeEEecCcceEEEecCCe-E-EEEECCCCEEECCEEEECCCHHHHhhCccCCCCCHHHHHHHHHhccCCccchh
Confidence            345678999999999999865443 3 5889999999999999998642        2111 11111000 01111 111


Q ss_pred             cCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997          253 DGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       253 d~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                      ...+.....+|+.+|+.......        ..+..|..+|+.+|..++.
T Consensus       294 ~~~~~~~~~~~~~~G~~~~~~~~--------g~~~ga~~~g~~~a~~i~~  335 (383)
T d2v5za1         294 GRVLRQPVDRIYFAGTETATHWS--------GYMEGAVEAGERAAREILH  335 (383)
T ss_dssp             GGGTTCCBTTEEECSGGGCSSST--------TSHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcCCcCceEeccccccccCC--------cchHHHHHHHHHHHHHHHH
Confidence            22334455679999976543221        1455688888888887764

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.56  E-value=9.8e-07  Score=78.21  Aligned_cols=101  Identities=17%  Similarity=0.276  Sum_probs=74.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccc-----cCHHHH----------------------------
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-----FTPSLA----------------------------  178 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~-----~~~~~~----------------------------  178 (414)
                      ..+||+|||+|+.|+-+|..|++.|.+|+|+++.+.+....     +.+...                            
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~   82 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTG   82 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccCCCcceeEeccCC
Confidence            35799999999999999999999999999999875432110     111111                            


Q ss_pred             ----------------HHHH-HHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997          179 ----------------QRYE-QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       179 ----------------~~~~-~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (414)
                                      ..+. ..-...++.++.+..+..+....++  ..+.++||+++.+|.+|.|.|....
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--v~v~~~dG~~~~~d~~v~adG~~s~  153 (265)
T d2voua1          83 ERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSET--VQMRFSDGTKAEANWVIGADGGASV  153 (265)
T ss_dssp             CEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSC--EEEEETTSCEEEESEEEECCCTTCH
T ss_pred             ceecccccccccchhHHHHHHHHHhcccceeecCcEEEEEEeeCCc--eEEEECCCCEEEEEEEecccccccc
Confidence                            1111 1123456888999999999875444  3688999999999999999997654

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.55  E-value=2.5e-08  Score=82.82  Aligned_cols=85  Identities=26%  Similarity=0.494  Sum_probs=66.1

Q ss_pred             CCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCCCEEEeC
Q 014997            3 DGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITN   82 (414)
Q Consensus         3 ~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~   82 (414)
                      .++|||+.+++.+.|.+|.+++ ++.+.. ....+           .....+++.+.+++++++++|+.+|...+.+..+
T Consensus        22 ~~~Vtvv~~~~~~~~~~~~~~~-~~~~~~-~~~~~-----------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~   88 (167)
T d1xhca1          22 TYEVTVIDKEPVPYYSKPMLSH-YIAGFI-PRNRL-----------FPYSLDWYRKRGIEIRLAEEAKLIDRGRKVVITE   88 (167)
T ss_dssp             TSEEEEECSSSSCCCCSTTHHH-HHTTSS-CGGGG-----------CSSCHHHHHHHTEEEECSCCEEEEETTTTEEEES
T ss_pred             CCCEEEEeccccccccccchhh-hhhhhh-hhhhh-----------hHHHHHHHHhccceeeeecccccccccccccccc
Confidence            4689999999999999888887 444321 11112           2456788999999999999999999887766654


Q ss_pred             CCcEEecCeEEEccCCCCC
Q 014997           83 SGKLLKYGSLIVATGCTAS  101 (414)
Q Consensus        83 ~g~~~~yd~LviAtG~~~~  101 (414)
                       +.++.||+||+|+|..+.
T Consensus        89 -~~~i~~D~li~a~G~~~~  106 (167)
T d1xhca1          89 -KGEVPYDTLVLATGAPNV  106 (167)
T ss_dssp             -SCEEECSEEEECCCEECC
T ss_pred             -ccccccceeEEEEEecCC
Confidence             556999999999998764

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.47  E-value=6.6e-08  Score=81.56  Aligned_cols=83  Identities=28%  Similarity=0.525  Sum_probs=66.9

Q ss_pred             CCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCCCEEEeC
Q 014997            3 DGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITN   82 (414)
Q Consensus         3 ~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~   82 (414)
                      +..|++++++..+||++|+|++.+......  +.+              ....+...+|+++++++|+.++.+...+.+.
T Consensus        28 ~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~--------------~~~~~~~~~i~~~~~~~v~~i~~~~~~~~~~   91 (183)
T d1d7ya1          28 QGLITVVGDEAERPYDRPPLSKDFMAHGDA--EKI--------------RLDCKRAPEVEWLLGVTAQSFDPQAHTVALS   91 (183)
T ss_dssp             CSCEEEEESSCSCCBCSGGGGTTHHHHCCG--GGS--------------BCCGGGSTTCEEEETCCEEEEETTTTEEEET
T ss_pred             ceEEEEEecccccchhhHHHhhhhhhhhhh--hhH--------------HHHHhhcCCeEEEEeccccccccccceeEec
Confidence            567999999999999999999855432111  111              1233456799999999999999999999999


Q ss_pred             CCcEEecCeEEEccCCCCC
Q 014997           83 SGKLLKYGSLIVATGCTAS  101 (414)
Q Consensus        83 ~g~~~~yd~LviAtG~~~~  101 (414)
                      +|++++||.||+|||..|.
T Consensus        92 ~g~~~~~D~vi~a~G~~p~  110 (183)
T d1d7ya1          92 DGRTLPYGTLVLATGAAPR  110 (183)
T ss_dssp             TSCEEECSEEEECCCEEEC
T ss_pred             CCcEeeeeeEEEEEEEEcc
Confidence            9999999999999998875

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.43  E-value=6.8e-07  Score=78.07  Aligned_cols=54  Identities=17%  Similarity=0.218  Sum_probs=40.5

Q ss_pred             HHHHHHHhCCcEEEcCceEEEEEecCC-CcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997          180 RYEQLYQQNGVKFVKGASIKNLEAGSD-GRVAAVKLEDGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       180 ~~~~~l~~~gv~i~~~~~v~~i~~~~~-~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (414)
                      .+.+.+++.|++|++++.|++|..+++ +++..| +.+|+++.||.||..+.+-|+
T Consensus       241 ~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v-~~~g~~~~ad~VI~~~s~~~~  295 (297)
T d2bcgg1         241 GFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGV-KTKLGTFKAPLVIADPTYFPE  295 (297)
T ss_dssp             HHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEE-EETTEEEECSCEEECGGGCGG
T ss_pred             HHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEE-EcCCEEEECCEEEEChhhccC
Confidence            355566889999999999999975444 455444 467889999999987655554

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.42  E-value=9.3e-07  Score=76.59  Aligned_cols=98  Identities=18%  Similarity=0.322  Sum_probs=69.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC-cc----------------cccccC---H---HHHHHHHHHHHh-CC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN-HL----------------LQRLFT---P---SLAQRYEQLYQQ-NG  189 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~-~~----------------l~~~~~---~---~~~~~~~~~l~~-~g  189 (414)
                      -.|+|||||+.|+|.|.++++.|.++.+++.+. .+                +.+..+   +   .....+++.+.+ .+
T Consensus         3 YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~~~n   82 (230)
T d2cula1           3 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRP   82 (230)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTT
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhhhcC
Confidence            368999999999999999999999999997641 11                000011   1   122334444443 48


Q ss_pred             cEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcC
Q 014997          190 VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  233 (414)
Q Consensus       190 v~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p  233 (414)
                      +.++.+. |..+.. +++.+..|.+.+|.++.|..||+++|.--
T Consensus        83 L~i~q~~-V~dli~-e~~~v~gV~t~~G~~~~AkaVILtTGTFL  124 (230)
T d2cula1          83 LHLFQAT-ATGLLL-EGNRVVGVRTWEGPPARGEKVVLAVGSFL  124 (230)
T ss_dssp             EEEEECC-EEEEEE-ETTEEEEEEETTSCCEECSEEEECCTTCS
T ss_pred             HHHHhcc-ceeeEe-cccceeeEEeccccEEEEeEEEEccCcce
Confidence            8988765 555543 36678889999999999999999999643

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.36  E-value=2.5e-07  Score=79.00  Aligned_cols=88  Identities=18%  Similarity=0.300  Sum_probs=68.1

Q ss_pred             CCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCCCEEEe
Q 014997            2 ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLIT   81 (414)
Q Consensus         2 ~~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~   81 (414)
                      ++.+||++.++++++|.++.++. ++.+.....+.+           .....+.+++.||+++++++|++||++++.|++
T Consensus        24 ~~~~V~v~~~~~~~~~~~~~~~~-~l~~~~~~~~~~-----------~~~~~~~l~~~gi~v~~~~~V~~i~~~~~~v~~   91 (198)
T d1nhpa1          24 PDAEIQWYEKGDFISFLSAGMQL-YLEGKVKDVNSV-----------RYMTGEKMESRGVNVFSNTEITAIQPKEHQVTV   91 (198)
T ss_dssp             TTSEEEEEESSSSSSBCGGGHHH-HHTTSSCCGGGS-----------BSCCHHHHHHTTCEEEETEEEEEEETTTTEEEE
T ss_pred             CCCeEEEEeCCCcccccccCcch-hhcccccchHHH-----------HHhhHHHHHHCCcEEEEeeceeeEeecccccee
Confidence            46789999999999999887774 555433322333           345678899999999999999999999988764


Q ss_pred             ---CCCc--EEecCeEEEccCCCCC
Q 014997           82 ---NSGK--LLKYGSLIVATGCTAS  101 (414)
Q Consensus        82 ---~~g~--~~~yd~LviAtG~~~~  101 (414)
                         .+|+  .+.||+||+|+|+.+.
T Consensus        92 ~~~~~g~~~~~~~D~li~a~G~~~~  116 (198)
T d1nhpa1          92 KDLVSGEERVENYDKLIISPGAVPF  116 (198)
T ss_dssp             EETTTCCEEEEECSEEEECCCEEEC
T ss_pred             eecccccccccccceeeEeecceee
Confidence               3443  5799999999998764

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.36  E-value=3.1e-06  Score=77.01  Aligned_cols=87  Identities=23%  Similarity=0.399  Sum_probs=60.8

Q ss_pred             HHhCCcEEEcCceEEEEEecCC------CcEEEEEe---CCCc--EEecCEEEEccCCcCC-----------C-h---hh
Q 014997          185 YQQNGVKFVKGASIKNLEAGSD------GRVAAVKL---EDGS--TIDADTIVIGIGAKPT-----------V-S---PF  238 (414)
Q Consensus       185 l~~~gv~i~~~~~v~~i~~~~~------~~~~~v~~---~~g~--~i~~D~vi~a~G~~p~-----------~-~---~l  238 (414)
                      +++.+++++.++.+..+..+++      +++..+..   .+++  .+.++.||+|+|-...           + +   ++
T Consensus       148 ~~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~~g~~~~~~ak~VilAtGG~~~~~~~~t~~~~~TGDG~~mA  227 (305)
T d1chua2         148 LNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGDGIAMA  227 (305)
T ss_dssp             HHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGGGSSSBSCGGGCSCHHHHHH
T ss_pred             HhccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCCCCcEEEEeecceEEeeeccccceeccCCCCceecccEeec
Confidence            3556788888888887764432      24555544   3443  4789999999985321           1 1   33


Q ss_pred             hhcCCcc-cCCCEEEcCCCCCCCCcEEEEccccc
Q 014997          239 ERVGLNS-SVGGIQVDGQFRTRMPGIFAIGDVAA  271 (414)
Q Consensus       239 ~~~gl~~-~~g~i~vd~~~~t~~~~IyA~GD~a~  271 (414)
                      .++|... +-++|.+|.+++|+.|++||+|+++.
T Consensus       228 ~~aGa~l~~m~~iq~~~~g~t~~~g~~a~G~~~~  261 (305)
T d1chua2         228 WRAGCRVANCGGVMVDDHGRTDVEGLYAIGEVSY  261 (305)
T ss_dssp             HHTTCCEECSCEEECCTTCBCSSBTEEECGGGEE
T ss_pred             cccceeeEecceeEECCcccCCCCCceecccEEE
Confidence            4567665 34789999999999999999999854

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.34  E-value=8.6e-06  Score=76.50  Aligned_cols=161  Identities=19%  Similarity=0.274  Sum_probs=107.3

Q ss_pred             CeEEEECCChHHHHHHHHHHh------CCCcEEEEeeCCcccccc-----c-----------------------------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVG------WKLDTTIIFPENHLLQRL-----F-----------------------------  173 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~------~g~~Vtlv~~~~~~l~~~-----~-----------------------------  173 (414)
                      -.|+|||||+.|+-+|..|++      .|.+|.|++++..+-.+.     +                             
T Consensus        33 ~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~~Ggvl~~~~l~~l~p~~~~~~~~~~~~~~~~~~~  112 (380)
T d2gmha1          33 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRFG  112 (380)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCccccccccHHHHHHHccchhhhccccccceecceEE
Confidence            379999999999999999987      799999999873321000     0                             


Q ss_pred             ---------------------------CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCC----------
Q 014997          174 ---------------------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED----------  216 (414)
Q Consensus       174 ---------------------------~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~----------  216 (414)
                                                 -.....++.+..++.|+.+..+..+.++...+++.+..+...+          
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ae~~g~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~  192 (380)
T d2gmha1         113 ILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPK  192 (380)
T ss_dssp             EECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEE
T ss_pred             EeeccccccccccCchhcccccceeehhhHHHHHHHHHHhhccceeeeecceeeeeeccCCceeeccccccccccccccc
Confidence                                       0124456667778899999999999998876676655544322          


Q ss_pred             -----CcEEecCEEEEccCCcCCCh--hhhhcCCccc---CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccH
Q 014997          217 -----GSTIDADTIVIGIGAKPTVS--PFERVGLNSS---VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHV  286 (414)
Q Consensus       217 -----g~~i~~D~vi~a~G~~p~~~--~l~~~gl~~~---~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~  286 (414)
                           +....++..+++.|.+....  +++...+...   .+++.  .--+...|++..+||++.+-++..+     +-+
T Consensus       193 ~~~~~~~~~~~~~~v~~~G~~G~l~k~li~~~~l~~~~~~~~G~~--sip~l~~~G~lLVGDAAG~vnP~~g-----~GI  265 (380)
T d2gmha1         193 TTFERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANCEPQGGFQ--SIPKLTFPGGLLIGCSPGFMNVPKI-----KGT  265 (380)
T ss_dssp             EEEECCCEEECSEEEECCCTTCHHHHHHHHHTTTTTTSCCCCGGG--GCCCCEETTEEECTTTTCCCBTTTT-----BCH
T ss_pred             ccccccccccccEEEEeeeCCCcchHHHHhhhhhccccccccccc--cccccccCCeeEEeccccccchhhc-----CCe
Confidence                 23466888899998765431  2333222211   11210  0112346899999999998765443     356


Q ss_pred             HHHHHHHHHHHHHHh
Q 014997          287 DHARQSAQHCIKALL  301 (414)
Q Consensus       287 ~~A~~~a~~aa~~i~  301 (414)
                      ..|+..|+.||+.+.
T Consensus       266 ~~Am~SG~lAAeai~  280 (380)
T d2gmha1         266 HTAMKSGTLAAESIF  280 (380)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             eeeeccHHHHHHHHH
Confidence            678888888887765

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.31  E-value=3.4e-06  Score=72.82  Aligned_cols=63  Identities=19%  Similarity=0.185  Sum_probs=42.9

Q ss_pred             CCCCCCCCCEEEecCHHHHHHHHH---h---hcCCCeEEEECCChHHHHHHHHHH--------------------hCC-C
Q 014997          105 EKIGGYLPGVHYIRDVADADALIS---S---LEKAKKVVVVGGGYIGMEVAAAAV--------------------GWK-L  157 (414)
Q Consensus       105 ~~~g~~~~gv~~~~~~~~~~~~~~---~---~~~~~~vvVvGgG~~g~e~A~~l~--------------------~~g-~  157 (414)
                      .+||.+++|++...++-..-.-..   .   ...+++|+|||+|++|++||..|.                    +.| .
T Consensus         5 ~IPGedl~gV~~A~dfl~~~N~~p~~~~~~~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~   84 (216)
T d1lqta1           5 NIPGEDLPGSIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQ   84 (216)
T ss_dssp             CCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCC
T ss_pred             CCCCCCCCCcEeHHHHHHHHhCCccccccCccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCc
Confidence            468999999998543322110000   0   014789999999999999999876                    345 4


Q ss_pred             cEEEEeeCCc
Q 014997          158 DTTIIFPENH  167 (414)
Q Consensus       158 ~Vtlv~~~~~  167 (414)
                      +|+++.|+..
T Consensus        85 ~V~iv~RRg~   94 (216)
T d1lqta1          85 EVVIVGRRGP   94 (216)
T ss_dssp             EEEEECSSCG
T ss_pred             eEEEEEECCh
Confidence            6999988743

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.25  E-value=4.6e-06  Score=74.19  Aligned_cols=155  Identities=16%  Similarity=0.117  Sum_probs=93.7

Q ss_pred             eEEEECCChHHHHHHHHHHhCCC-cEEEEeeCCccccc----ccCHHH--------------------------------
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHLLQR----LFTPSL--------------------------------  177 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~l~~----~~~~~~--------------------------------  177 (414)
                      +|+|||||+.|+-+|..|++.|. +|+|+++.+.+...    .+.+..                                
T Consensus         3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~   82 (288)
T d3c96a1           3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSGAT   82 (288)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTSCE
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEEEECHHHHHHHHHcCchhhhHhhhcccccceeEcCCCCE
Confidence            79999999999999999999996 89999997543210    011110                                


Q ss_pred             ------------------------HHHHHH--HHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCC----cEEecCEEEE
Q 014997          178 ------------------------AQRYEQ--LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG----STIDADTIVI  227 (414)
Q Consensus       178 ------------------------~~~~~~--~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g----~~i~~D~vi~  227 (414)
                                              ......  .....++.+..+++++.+...+++.  .+.+.+|    +++.+|++|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v--~v~~~~g~~~~~~~~ad~vi~  160 (288)
T d3c96a1          83 VWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEERDGRV--LIGARDGHGKPQALGADVLVG  160 (288)
T ss_dssp             EEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEEETTEE--EEEEEETTSCEEEEEESEEEE
T ss_pred             EEeccccccccccCcccccchhhhHHHHHHHHHHhccCeeeecCcEEEEeeecCCcE--EEEEEcCCCCeEEEeeceeec
Confidence                                    011111  1134578888889998887654443  4455444    4799999999


Q ss_pred             ccCCcCCChhhhhcCCcccCCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 014997          228 GIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  301 (414)
Q Consensus       228 a~G~~p~~~~l~~~gl~~~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~  301 (414)
                      |-|.....   ...-....  ..............+..+||++....+..|.     ....|...+...+..+.
T Consensus       161 ADG~~S~v---r~~~~~~~--~~~~~~~~~~~~~~~~~~gda~h~~~p~~g~-----G~~~ai~d~~~l~~~l~  224 (288)
T d3c96a1         161 ADGIHSAV---RAHLHPDQ--RPLRDPLPHWGRGRITLLGDAAHLMYPMGAN-----GASQAILDGIELAAALA  224 (288)
T ss_dssp             CCCTTCHH---HHHHCTTC--CCCCCCCSCCCBTTEEECTHHHHCCCSSTTC-----THHHHHHHHHHHHHHHH
T ss_pred             cCCcccee---eeeecccc--ccccccccccccCcceecccccceeCCcccc-----chhhhhhhHHHHHHHHh
Confidence            99976432   11111000  0000111223556889999998765554343     23346666666666554

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.18  E-value=2.1e-05  Score=71.68  Aligned_cols=89  Identities=22%  Similarity=0.412  Sum_probs=63.7

Q ss_pred             HHHHhCCcEEEcCceEEEEEecCCCcEEEEE---eCCCc--EEecCEEEEccCCc-----CCC----------hhhhhcC
Q 014997          183 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVK---LEDGS--TIDADTIVIGIGAK-----PTV----------SPFERVG  242 (414)
Q Consensus       183 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~---~~~g~--~i~~D~vi~a~G~~-----p~~----------~~l~~~g  242 (414)
                      +..+..+|+++.++.+.++..+ ++++..+.   ..+|+  .+.++.||+|+|--     .++          .++..+|
T Consensus       143 ~~~~~~~v~i~~~~~v~~Ll~d-~g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~g~~y~~ttn~~~~tGDG~~mA~~aG  221 (311)
T d1kf6a2         143 TSLQFPQIQRFDEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHG  221 (311)
T ss_dssp             HHTTCTTEEEEETEEEEEEEEE-TTEEEEEEEEETTTTEEEEEECSCEEECCCCCGGGSSSBSSCTTCSCHHHHHHHTTT
T ss_pred             HHHccCcceeEeeeEeeeeEec-CCcceeEEEEEcCCCcEEEEECCEEEEcCCCccccccccCCCCCcCcHHHHHHHhcc
Confidence            3334568999999999998754 57766554   35664  46899999999842     111          1234556


Q ss_pred             Ccc-cCCCEEEcCCCCCCCCcEEEEcccccc
Q 014997          243 LNS-SVGGIQVDGQFRTRMPGIFAIGDVAAF  272 (414)
Q Consensus       243 l~~-~~g~i~vd~~~~t~~~~IyA~GD~a~~  272 (414)
                      .+. +-++|.++++..++.+++|+.|++..-
T Consensus       222 a~l~dme~iq~~p~~~~~~~~~~~~~~~~~~  252 (311)
T d1kf6a2         222 VPLRDMGGIETDQNCETRIKGLFAVGECSSV  252 (311)
T ss_dssp             CCEESCCEEECCTTSBCSSBTEEECGGGEEC
T ss_pred             cceeecccccccccchhcccCCCcCcceeee
Confidence            654 346899999999999999999998753

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.15  E-value=7.5e-07  Score=77.66  Aligned_cols=127  Identities=18%  Similarity=0.246  Sum_probs=76.9

Q ss_pred             eEEEECCChHHHHHHHHHHhC--CCcEEEEeeCCcccc---------cccCHHHHHHHHHHHHhCCcEEEcCceEEEEEe
Q 014997          135 KVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQ---------RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  203 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~l~---------~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~  203 (414)
                      +|+|||+|+.|+.+|..|++.  |.+|+++++.+.+..         ......+.......+++.|++++.++.|.    
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~----   78 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVG----   78 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBT----
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehhhccccccccccchhhhhhhhhcCCeeEEeeEEeC----
Confidence            799999999999999999764  789999999987531         11223455566677888999999887651    


Q ss_pred             cCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhh-hhcCCcccCCCEEEcCCCC-CCCCcEEEEccccccC
Q 014997          204 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF-ERVGLNSSVGGIQVDGQFR-TRMPGIFAIGDVAAFP  273 (414)
Q Consensus       204 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l-~~~gl~~~~g~i~vd~~~~-t~~~~IyA~GD~a~~~  273 (414)
                       .+-.  ...+    .-.+|.+++|+|..+..... ...... +-..+......+ .+.+..+..|+.....
T Consensus        79 -~~~~--~~~l----~~~~d~v~~a~Ga~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  142 (230)
T d1cjca2          79 -RDVT--VQEL----QDAYHAVVLSYGAEDKSRPIDPSVPFD-PKLGVVPNMEGRVVDVPGLYCSGWVKRGP  142 (230)
T ss_dssp             -TTBC--HHHH----HHHSSEEEECCCCCEECCCCCTTSCCB-TTTTBCCEETTEETTCTTEEECTHHHHCT
T ss_pred             -cccc--HHHH----HhhhceEEEEeeccccccccccccccc-ccccccccccceeecccccccccccccCc
Confidence             1100  0001    12589999999987543221 111111 101111111111 2457788888765543

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.14  E-value=5.3e-06  Score=63.09  Aligned_cols=77  Identities=14%  Similarity=0.149  Sum_probs=56.7

Q ss_pred             cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEE
Q 014997          131 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  210 (414)
Q Consensus       131 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~  210 (414)
                      .++|+|+|||+|.+|+++|..|++.+.+++++.+.+.....               ..++...  ..+.+++..  +.  
T Consensus        30 f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~~~~~---------------~~~~~~~--~~i~~~~~~--~~--   88 (107)
T d2gv8a2          30 FVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDIQ---------------NESLQQV--PEITKFDPT--TR--   88 (107)
T ss_dssp             GTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCSCB---------------CSSEEEE--CCEEEEETT--TT--
T ss_pred             cCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecCccccc---------------cccceec--CCeeEEecC--CC--
Confidence            37899999999999999999999999998887776543221               1123333  246666643  22  


Q ss_pred             EEEeCCCcEEe-cCEEEEc
Q 014997          211 AVKLEDGSTID-ADTIVIG  228 (414)
Q Consensus       211 ~v~~~~g~~i~-~D~vi~a  228 (414)
                      .+.+.||+.+. .|.||+|
T Consensus        89 ~v~~~dG~~~~~vD~Ii~C  107 (107)
T d2gv8a2          89 EIYLKGGKVLSNIDRVIYC  107 (107)
T ss_dssp             EEEETTTEEECCCSEEEEC
T ss_pred             EEEEcCCCEEeCCCEEEEC
Confidence            58899999876 6999987

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.06  E-value=1.6e-05  Score=71.42  Aligned_cols=128  Identities=17%  Similarity=0.166  Sum_probs=80.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc------cccC---------------------------------
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------RLFT---------------------------------  174 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~------~~~~---------------------------------  174 (414)
                      .+|+|||+|++|+-+|..|++.|.+|+|+++.+....      ..+.                                 
T Consensus         3 ~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~~   82 (292)
T d1k0ia1           3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQ   82 (292)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCceEEEECHHHHHHHHHcCchHHHHhhcccccceEEEeccc
Confidence            3799999999999999999999999999998742110      0011                                 


Q ss_pred             --------------------HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCc--EEecCEEEEccCCc
Q 014997          175 --------------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAK  232 (414)
Q Consensus       175 --------------------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~  232 (414)
                                          ..+.+.+.+.+++.+..++.+.........+++.+......+|+  ++.||.||.|.|.+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~i~a~~vVgADG~~  162 (292)
T d1k0ia1          83 RRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFH  162 (292)
T ss_dssp             EEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCCTT
T ss_pred             ccccccccccccccceeecHHHHHHHHHHHHHhCCCcEEEcceeeeeeeeccCceEEEEecCCcEEEEEeCEEEECCCCC
Confidence                                12344455556677777777766555543333333222334553  58899999999987


Q ss_pred             CCChhhhhcCCcccCCCEEEcCCCCCCCCcEEEEccccccCCc
Q 014997          233 PTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK  275 (414)
Q Consensus       233 p~~~~l~~~gl~~~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~  275 (414)
                      ....-  ..+..            .......+.+||++....+
T Consensus       163 S~vR~--~i~~~------------~~~~~~~~~~~~~~~~~~p  191 (292)
T d1k0ia1         163 GISRQ--SIPAE------------RMQHGRLFLAGDAAHIVPP  191 (292)
T ss_dssp             CSTGG--GSCGG------------GSEETTEEECGGGTEECCG
T ss_pred             Ccccc--eeeec------------cccccccccceeeeeecCC
Confidence            54221  11111            1123567788998765443

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=98.00  E-value=6.1e-05  Score=68.99  Aligned_cols=31  Identities=23%  Similarity=0.253  Sum_probs=29.3

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      .|+|||+|..|+-+|..+++.|.+|+|+++.
T Consensus         9 DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~   39 (330)
T d1neka2           9 DAVVIGAGGAGMRAALQISQSGQTCALLSKV   39 (330)
T ss_dssp             SCEEECCSHHHHHHHHHHHHTTCCCEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCeEEEEeCC
Confidence            5899999999999999999999999999875

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.93  E-value=1.7e-09  Score=95.49  Aligned_cols=93  Identities=10%  Similarity=0.063  Sum_probs=59.0

Q ss_pred             CCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHH
Q 014997           74 IEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAV  153 (414)
Q Consensus        74 ~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~  153 (414)
                      ...+.+..++..++.||+||||||+.+.. +..++....+.......   .........+++++|+|+|++|+|+|..|+
T Consensus       125 ~~~~~~~~~~~~~~~~d~vviAtG~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~vvViGgG~~g~e~A~~l~  200 (233)
T d1djqa3         125 LGQKPMTADDVLQYGADKVIIATGASECT-LWNELKARESEWAENDI---KGIYLIGDAEAPRLIADATFTGHRVAREIE  200 (233)
T ss_dssp             CSCCCCCHHHHHTSCCSEEEECCCEECCH-HHHHHHHTTHHHHHTTC---CEEEECGGGTSCCCHHHHHHHHHHHHHTTT
T ss_pred             cccccccchhhhhhccceeeeccCCCccc-ccccccccccccchhhh---hhhhhccccCCceeEecCchHHHHHHHHHH
Confidence            33444444445568999999999998653 22121111111110000   000001124688999999999999999999


Q ss_pred             hCCCcEEEEeeCCcccc
Q 014997          154 GWKLDTTIIFPENHLLQ  170 (414)
Q Consensus       154 ~~g~~Vtlv~~~~~~l~  170 (414)
                      +.|.+|+++++.+.++.
T Consensus       201 ~~g~~Vtli~r~~~~~~  217 (233)
T d1djqa3         201 EANPQIAIPYKRETIAW  217 (233)
T ss_dssp             SSCTTSCCCCCCCCCCT
T ss_pred             hcCCceEEEEecccccc
Confidence            99999999999887653

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.92  E-value=5.3e-07  Score=79.01  Aligned_cols=38  Identities=18%  Similarity=0.220  Sum_probs=35.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  169 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l  169 (414)
                      ..++|+|||+|+.|+.+|..|+++|.+|+++++.+++.
T Consensus        48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~G   85 (233)
T d1djqa3          48 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIG   85 (233)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT
T ss_pred             CCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccC
Confidence            57899999999999999999999999999999987763

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=97.92  E-value=1.1e-05  Score=69.92  Aligned_cols=36  Identities=17%  Similarity=0.224  Sum_probs=32.2

Q ss_pred             cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          131 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       131 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      -++|+|+|||+|.+|+++|..+++.+.+++++.+.+
T Consensus        30 ~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~   65 (235)
T d1w4xa2          30 FSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP   65 (235)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCCCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence            378999999999999999999999999988877664

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.84  E-value=4e-06  Score=72.98  Aligned_cols=91  Identities=12%  Similarity=0.170  Sum_probs=65.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCC-------CcEEEEeeCCcccc---------cccCHHHHHHHHHHHHhCCcEEEcCc
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWK-------LDTTIIFPENHLLQ---------RLFTPSLAQRYEQLYQQNGVKFVKGA  196 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g-------~~Vtlv~~~~~~l~---------~~~~~~~~~~~~~~l~~~gv~i~~~~  196 (414)
                      +.+|+|||+|++|+.+|..|+++|       .+|+++++.+.+-.         ......+.......+.+.|+++++++
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~gi~p~~~~~~~~~~~~~~~~~~~g~~~~~~~   81 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV   81 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeeccCcccccchhhhhhhhhhhccCCceEEEEE
Confidence            468999999999999999999887       57999999876532         11233555666677888999999987


Q ss_pred             eEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997          197 SIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  234 (414)
Q Consensus       197 ~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (414)
                      .+....          .+++ -...+|.+++++|..+.
T Consensus        82 ~v~~~~----------~~~~-~~~~~~~v~~atGa~~~  108 (239)
T d1lqta2          82 VVGEHV----------QPGE-LSERYDAVIYAVGAQSR  108 (239)
T ss_dssp             CBTTTB----------CHHH-HHHHSSEEEECCCCCEE
T ss_pred             Eecccc----------chhh-hhccccceeeecCCCcc
Confidence            652110          0010 12458999999998654

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=97.82  E-value=5.9e-06  Score=68.43  Aligned_cols=84  Identities=18%  Similarity=0.233  Sum_probs=60.0

Q ss_pred             CCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCCCEEEe
Q 014997            2 ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLIT   81 (414)
Q Consensus         2 ~~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~   81 (414)
                      ++.+||+|++++  .|..++++..+.... .....            ......++...++++..+ ++..++...+.+.+
T Consensus        26 ~~~~Vtlie~~~--~~~~~~~~~~~~~~~-~~~~~------------~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~   89 (186)
T d1fcda1          26 PSIEVTLIEPNT--DYYTCYLSNEVIGGD-RKLES------------IKHGYDGLRAHGIQVVHD-SATGIDPDKKLVKT   89 (186)
T ss_dssp             TTSEEEEECSCS--CEECSTTHHHHHHTS-SCGGG------------GEECSHHHHTTTEEEECC-CEEECCTTTTEEEE
T ss_pred             CCCcEEEEECCC--ccccccccccccchh-hhhhh------------hhhhhhhccccceeEeee-eeEeeeeccceeec
Confidence            467999996555  445566665444331 11111            123445677788998875 78888899999999


Q ss_pred             CCCcEEecCeEEEccCCCCC
Q 014997           82 NSGKLLKYGSLIVATGCTAS  101 (414)
Q Consensus        82 ~~g~~~~yd~LviAtG~~~~  101 (414)
                      .+++.++||+||+|||.++.
T Consensus        90 ~~~~~i~~D~li~atG~~~~  109 (186)
T d1fcda1          90 AGGAEFGYDRCVVAPGIELI  109 (186)
T ss_dssp             TTSCEEECSEEEECCCEEEC
T ss_pred             ccceeeccceEEEEeccccc
Confidence            99999999999999999875

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.62  E-value=5.9e-06  Score=75.40  Aligned_cols=37  Identities=24%  Similarity=0.288  Sum_probs=32.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhC--CCcEEEEeeCCcc
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHL  168 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~  168 (414)
                      ...+|+|||+|+.|+.+|..|+++  |.+|+++++.+.+
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~   87 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP   87 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Confidence            356799999999999999999864  8999999988654

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.51  E-value=0.0022  Score=58.46  Aligned_cols=32  Identities=25%  Similarity=0.436  Sum_probs=27.9

Q ss_pred             CeEEEECCChHHHHHHHHHHh----CCCcEEEEeeC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVG----WKLDTTIIFPE  165 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~----~g~~Vtlv~~~  165 (414)
                      -.|+|||+|+.|+-+|..+++    .|.+|.|+++.
T Consensus        22 ~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~   57 (356)
T d1jnra2          22 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKA   57 (356)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSS
T ss_pred             cCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCC
Confidence            369999999999999988864    68999999975

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=97.49  E-value=7.6e-05  Score=57.26  Aligned_cols=46  Identities=20%  Similarity=0.148  Sum_probs=40.4

Q ss_pred             CHhHHHHcCCeEEcCCcEEEEeCCC---CEEEeCCCcEEecCeEEEccC
Q 014997           52 TPEWYKEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVATG   97 (414)
Q Consensus        52 ~~~~~~~~~i~~~~~~~V~~id~~~---~~V~~~~g~~~~yd~LviAtG   97 (414)
                      ..+.++++||+++++++|+.+....   ..+++++|+++.+|.||+|||
T Consensus        68 ~~~~l~~~GV~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          68 LVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             HHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             HHHHHHHCCCEEEeCCEEEEEEEcCCcEEEEEECCCCEEEcCEEEEecC
Confidence            4678889999999999999987654   268899999999999999998

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=97.34  E-value=0.00082  Score=59.48  Aligned_cols=101  Identities=21%  Similarity=0.211  Sum_probs=68.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHh-CCCcEEEEeeCCcccccc-----------cC-------------------------
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVG-WKLDTTIIFPENHLLQRL-----------FT-------------------------  174 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~-~g~~Vtlv~~~~~~l~~~-----------~~-------------------------  174 (414)
                      ....|+|||+|+.|+.+|..|++ .|.+|+++++++.+-...           +.                         
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  111 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKH  111 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceeecCEEcCHHHHhhhHHHHHHHcCCceecCCccceecc
Confidence            35679999999999999999987 599999999886431100           00                         


Q ss_pred             --HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEe--------------CCCcEEecCEEEEccCCcC
Q 014997          175 --PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL--------------EDGSTIDADTIVIGIGAKP  233 (414)
Q Consensus       175 --~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~--------------~~g~~i~~D~vi~a~G~~p  233 (414)
                        ..+...+.+..+..++.+..++.+..+... ++++..+..              .++..+.++.++.++|...
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~gv~~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~~  185 (278)
T d1rp0a1         112 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDG  185 (278)
T ss_dssp             HHHHHHHHHHHHHTSTTEEEEETEEEEEEEEE-TTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSS
T ss_pred             cHHHHHHHHHHHHHhCCCEEEeCCcceeeeec-CCeEEEEEeccceeeeeecccccccceeeccceEEECcCCCc
Confidence              012233444556678888888888777643 344433321              2335789999999999764

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.32  E-value=5.6e-05  Score=55.57  Aligned_cols=80  Identities=19%  Similarity=0.221  Sum_probs=55.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEE
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  211 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~  211 (414)
                      ++|+|+|+|.|-+|+.+|..|.++|.+|++++.....-..           +.+ +.++.++++.    .          
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~-----------~~~-~~~~~~~~~~----~----------   57 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGL-----------DKL-PEAVERHTGS----L----------   57 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTG-----------GGS-CTTSCEEESB----C----------
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhH-----------HHH-hhccceeecc----c----------
Confidence            6799999999999999999999999999999875532110           111 2234443321    0          


Q ss_pred             EEeCCCcEEecCEEEEccCCcCCChhhhh
Q 014997          212 VKLEDGSTIDADTIVIGIGAKPTVSPFER  240 (414)
Q Consensus       212 v~~~~g~~i~~D~vi~a~G~~p~~~~l~~  240 (414)
                         .....-.+|.+|+++|..++.++++.
T Consensus        58 ---~~~~~~~~d~vi~SPGi~~~~~~~~~   83 (93)
T d2jfga1          58 ---NDEWLMAADLIVASPGIALAHPSLSA   83 (93)
T ss_dssp             ---CHHHHHHCSEEEECTTSCTTSHHHHH
T ss_pred             ---chhhhccCCEEEECCCCCCCCHHHHH
Confidence               00012357999999999998877654

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.00016  Score=65.28  Aligned_cols=38  Identities=24%  Similarity=0.468  Sum_probs=35.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  169 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l  169 (414)
                      +..+|+|||+|.+|+-+|..|++.|.+|+|+++++++-
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~G   41 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVG   41 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSB
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCc
Confidence            45789999999999999999999999999999988764

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.16  E-value=0.00032  Score=53.62  Aligned_cols=46  Identities=17%  Similarity=0.338  Sum_probs=40.3

Q ss_pred             CHhHHHHcCCeEEcCCcEEEEeCCC---CEEEeCCCcEEecCeEEEccC
Q 014997           52 TPEWYKEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVATG   97 (414)
Q Consensus        52 ~~~~~~~~~i~~~~~~~V~~id~~~---~~V~~~~g~~~~yd~LviAtG   97 (414)
                      ..+.++++||+++++++|++|....   ..+++++|++++||.+|+|||
T Consensus        68 ~~~~l~~~GI~v~~~~~v~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~G  116 (117)
T d1feca2          68 LTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIG  116 (117)
T ss_dssp             HHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             HHHHHhhCcEEEEcCCEEEEEEECCCCEEEEEECCCCEEEcCEEEEecC
Confidence            4577889999999999999997543   368899999999999999999

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.00027  Score=55.79  Aligned_cols=46  Identities=17%  Similarity=0.341  Sum_probs=40.8

Q ss_pred             CHhHHHHcCCeEEcCCcEEEEeCCCC--EEEeCCCcEEecCeEEEccC
Q 014997           52 TPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATG   97 (414)
Q Consensus        52 ~~~~~~~~~i~~~~~~~V~~id~~~~--~V~~~~g~~~~yd~LviAtG   97 (414)
                      ..+.+++.||+++++++|.+++.++.  .|++++|+++.+|.+|+|||
T Consensus        89 ~~~~l~~~GV~~~~~~~V~~i~~~~~~~~v~l~~G~~i~aD~Vi~A~G  136 (137)
T d1m6ia2          89 TMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVG  136 (137)
T ss_dssp             HHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCC
T ss_pred             HHHHHHhCCcEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEEeec
Confidence            45778899999999999999987654  68899999999999999999

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.15  E-value=0.00019  Score=65.14  Aligned_cols=40  Identities=25%  Similarity=0.399  Sum_probs=36.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR  171 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~  171 (414)
                      +.|+|+|||+|++|+-+|..|++.|.+|+|+++++++...
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~   40 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGN   40 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGG
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCe
Confidence            3589999999999999999999999999999999887653

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=97.10  E-value=1.7e-06  Score=72.19  Aligned_cols=72  Identities=22%  Similarity=0.370  Sum_probs=49.7

Q ss_pred             CCHhHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhh
Q 014997           51 QTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL  130 (414)
Q Consensus        51 ~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~  130 (414)
                      +..+++++.||+++++++|+.           +. ...||.+|+|||+.++.++ .     ++                .
T Consensus       100 ~~~~~~~~~gV~i~l~~~Vt~-----------~~-~~~~d~vilAtG~~~~~~~-~-----pg----------------~  145 (179)
T d1ps9a3         100 YYRRMIEVTGVTLKLNHTVTA-----------DQ-LQAFDETILASGIPNRALA-Q-----PL----------------I  145 (179)
T ss_dssp             HHHHHHHHHTCEEEESCCCCS-----------SS-SCCSSEEEECCCEECCTTH-H-----HH----------------H
T ss_pred             HHHHhhhcCCeEEEeCCEEcc-----------cc-cccceeEEEeecCCCcccc-c-----ch----------------h
Confidence            345667778999999987741           11 3589999999999765322 1     11                2


Q ss_pred             cCCCeEEEECCChHHHHH-HHHHHhCC
Q 014997          131 EKAKKVVVVGGGYIGMEV-AAAAVGWK  156 (414)
Q Consensus       131 ~~~~~vvVvGgG~~g~e~-A~~l~~~g  156 (414)
                      ..+++++|+|+|.+++++ +......|
T Consensus       146 ~~g~~v~vigggd~a~~~~~~~Av~~G  172 (179)
T d1ps9a3         146 DSGKTVHLIGGCDVAMELDARRAIAQG  172 (179)
T ss_dssp             TTTCCEEECGGGTCCSSCCHHHHHHHH
T ss_pred             ccCCEEEEECCcHhhhhccchhhhhcc
Confidence            358999999999998886 44443444

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.09  E-value=3.3e-07  Score=81.71  Aligned_cols=47  Identities=6%  Similarity=0.153  Sum_probs=24.0

Q ss_pred             hHHHHcCCeEEcCCcEEEEeCCCCEEE-----------eCCCcEEecCeEEEccCCCCC
Q 014997           54 EWYKEKGIEMIYQDPVTSIDIEKQTLI-----------TNSGKLLKYGSLIVATGCTAS  101 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~~id~~~~~V~-----------~~~g~~~~yd~LviAtG~~~~  101 (414)
                      ..+++.+|+++.|.. .-+++..-.|.           ..+++.+++|++|||||++|.
T Consensus        96 ~~l~~~gV~vi~G~a-~f~~~~~v~v~~~~~~~~~~~~~~~~~~i~a~~iiIATGs~P~  153 (259)
T d1onfa1          96 QNLSKDKVDLYEGTA-SFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPV  153 (259)
T ss_dssp             HHHHHTTCEEEESCC-CCC--------------------------CBSSEEECCCCCBC
T ss_pred             hhcccccceEEeeec-ccccccccccccceeccccccCccceEEEeeeeEEEecCCCCc
Confidence            345678999988732 21121111111           113356999999999999984

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.09  E-value=0.00088  Score=54.98  Aligned_cols=88  Identities=28%  Similarity=0.474  Sum_probs=69.4

Q ss_pred             CCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCCCEEEe
Q 014997            2 ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLIT   81 (414)
Q Consensus         2 ~~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~   81 (414)
                      ++..|+++.+++..+|.+.+++..+..+.... ...           ...........+..+..+..++.++.+...+.+
T Consensus        27 ~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   94 (185)
T d1q1ra1          27 WEGNIRLVGDATVIPHHLPPLSKAYLAGKATA-ESL-----------YLRTPDAYAAQNIQLLGGTQVTAINRDRQQVIL   94 (185)
T ss_dssp             CCSEEEEECSCCSCCBCSGGGGTTTTTTCSCS-GGG-----------BSSCHHHHHHTTEEEECSCCEEEEETTTTEEEE
T ss_pred             CceEEEEecCccccchhhhHHHHHHHHhhhhh-hhh-----------hhhhhhhhcccceeeeccceeeeecccccEEEe
Confidence            35578889999999999988887555442111 111           245667788889999999999999999999999


Q ss_pred             CCCcEEecCeEEEccCCCCC
Q 014997           82 NSGKLLKYGSLIVATGCTAS  101 (414)
Q Consensus        82 ~~g~~~~yd~LviAtG~~~~  101 (414)
                      .++.++.+|.+++++|..|.
T Consensus        95 ~~~~~i~~d~~i~~~G~~~~  114 (185)
T d1q1ra1          95 SDGRALDYDRLVLATGGRPL  114 (185)
T ss_dssp             TTSCEEECSEEEECCCEEEE
T ss_pred             eceeEEEeeeeeeeeecccC
Confidence            99999999999999998753

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.02  E-value=0.00048  Score=53.97  Aligned_cols=46  Identities=15%  Similarity=0.309  Sum_probs=39.4

Q ss_pred             CHhHHHHcCCeEEcCCcEEEEeCCC-----CEEEeCCCcEEecCeEEEccC
Q 014997           52 TPEWYKEKGIEMIYQDPVTSIDIEK-----QTLITNSGKLLKYGSLIVATG   97 (414)
Q Consensus        52 ~~~~~~~~~i~~~~~~~V~~id~~~-----~~V~~~~g~~~~yd~LviAtG   97 (414)
                      ..+.++++||+++++++|+.++...     ..|.+++|+++++|.+|+|+|
T Consensus        83 ~~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2          83 YEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             HHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             hhhcccccccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence            3567789999999999999997543     257899999999999999998

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=97.01  E-value=0.00031  Score=60.99  Aligned_cols=35  Identities=29%  Similarity=0.416  Sum_probs=32.3

Q ss_pred             cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          131 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       131 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      ...++|+|||+|..|+-+|..|+++|.+|+|+++.
T Consensus         4 ~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~   38 (268)
T d1c0pa1           4 HSQKRVVVLGSGVIGLSSALILARKGYSVHILARD   38 (268)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCC
Confidence            34579999999999999999999999999999985

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.01  E-value=0.00065  Score=52.24  Aligned_cols=44  Identities=14%  Similarity=0.338  Sum_probs=39.0

Q ss_pred             CHhHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccC
Q 014997           52 TPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATG   97 (414)
Q Consensus        52 ~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG   97 (414)
                      ..++++++||+++++++|+++..  ..|+++||+++++|.+|+|+|
T Consensus        78 ~~~~l~~~GV~i~~~~~v~~~~~--~~v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          78 VARYHAAQGVDLRFERSVTGSVD--GVVLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             HHHHHHTTTCEEEESCCEEEEET--TEEEETTSCEEECSEEEECSC
T ss_pred             HHHHHHHCCcEEEeCCEEEEEeC--CEEEECCCCEEECCEEEEeeC
Confidence            45778899999999999998764  478899999999999999998

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.94  E-value=0.00049  Score=52.40  Aligned_cols=46  Identities=22%  Similarity=0.212  Sum_probs=36.6

Q ss_pred             CHhHHHHcCCeEEcCCcEEEEeCCCCEEEeCCC--cEEecCeEEEccC
Q 014997           52 TPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATG   97 (414)
Q Consensus        52 ~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g--~~~~yd~LviAtG   97 (414)
                      ..+.++++||+++++++|++++.....+...++  +++++|.+|+|||
T Consensus        68 l~~~l~~~gV~i~~~~~V~~i~~~~~~~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          68 VAESLKKLGIALHLGHSVEGYENGCLLANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             HHHHHHHHTCEEETTCEEEEEETTEEEEECSSSCCCEECCSCEEECCC
T ss_pred             HHHHHHhhcceEEcCcEEEEEcCCeEEEEEcCCCeEEEEcCEEEEecC
Confidence            467888999999999999999865444444333  5799999999998

>d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=96.83  E-value=0.0021  Score=50.62  Aligned_cols=104  Identities=15%  Similarity=0.154  Sum_probs=62.9

Q ss_pred             HHHHHHHh---hcCCCeEEEE-CCC-----hHHHHHHH----HHHhCC--CcEEEEeeCCcccc-cccCHHHHHHHHHHH
Q 014997          122 DADALISS---LEKAKKVVVV-GGG-----YIGMEVAA----AAVGWK--LDTTIIFPENHLLQ-RLFTPSLAQRYEQLY  185 (414)
Q Consensus       122 ~~~~~~~~---~~~~~~vvVv-GgG-----~~g~e~A~----~l~~~g--~~Vtlv~~~~~~l~-~~~~~~~~~~~~~~l  185 (414)
                      ....+++.   +..|.++++. .++     ....|+|.    .|+++|  .++.++...+.... ..+.+.+.+.+.+.+
T Consensus        19 ~~~~L~~~l~~~~~Gg~vv~t~p~~P~kCpgAP~e~a~l~~~~lr~~g~r~kv~i~~~~~~~~~~~~~~~~~~~~~~~~~   98 (141)
T d1fcda2          19 QTAILRKQLEDMADGGTVVIAPPAAPFRCPPGPYERASQVAYYLKAHKPMSKVIILDSSQTFSKQSQFSKGWERLYGFGT   98 (141)
T ss_dssp             HHHHHHHHHHHSCTTCCEEEECCCSSCSSTTHHHHHHHHHHHHHGGGCSCCCEEEECSCSSCTTHHHHHHHHHHHHCSTT
T ss_pred             HHHHHHHHHHhcccCCeEEEecCCCCccCCchHHHHHHHHHHHHHHcCCCCcEEEEecCCCCccCCcccHHHHHHHHHHH
Confidence            34444443   4456666554 233     33444444    456666  35666655443211 122345566777778


Q ss_pred             HhCCcEEEcCce--EEEEEecCCCcEEEEEeCCCcEEecCEEEEcc
Q 014997          186 QQNGVKFVKGAS--IKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI  229 (414)
Q Consensus       186 ~~~gv~i~~~~~--v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~  229 (414)
                      +++||+++.+..  +.+++..  .+  .+++.+|+++++|++++.+
T Consensus        99 ~~~~I~~~~~~~~~~v~vd~~--~~--~~~~~~Ge~v~yD~l~vvP  140 (141)
T d1fcda2          99 ENAMIEWHPGPDSAVVKVDGG--EM--MVETAFGDEFKADVINLIP  140 (141)
T ss_dssp             SSCSEEEECSSTTCEEEEEET--TT--EEEETTCCEEECSEEEECC
T ss_pred             HhcCceeeecCCceEEeecCC--cE--EEEeCCCcEEeeeEEEeCC
Confidence            889999998764  5566532  22  5788999999999999864

>d1v59a3 d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.66  E-value=0.00083  Score=51.75  Aligned_cols=63  Identities=14%  Similarity=0.139  Sum_probs=51.4

Q ss_pred             EEEEEEe--CCEEEEEEeecCChHHhhHHHH-HHhCCCCCChh-h-hcCCCcHHHHHHHHhcCCCccc
Q 014997          350 IATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVDKA-K-LQQASSVEEALEIARAALPVEA  412 (414)
Q Consensus       350 ~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~-l~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~  412 (414)
                      |.++.++  +++|+|+.+++..+.++...-. +|+.+.+++.- . ...||+++|++++|++++.+++
T Consensus        53 ~~Kli~d~~~~~ilGa~ivG~~A~elI~~~alai~~~~t~~~l~~~i~~hPT~sE~~~~Aa~~~~~~~  120 (123)
T d1v59a3          53 FVKILIDSKTERILGAHIIGPNAGEMIAEAGLALEYGASAEDVARVCHAHPTLSEAFKEANMAAYDKA  120 (123)
T ss_dssp             EEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCTTHHHHHHHHHHHSCC
T ss_pred             EEEEEEECCCCEEEEEEEEchHHHHHHHHHHHHHHcCCcHHHHHhcccCCCcHHHHHHHHHHHHcCCC
Confidence            6677665  5899999998888888876655 56889888883 3 6899999999999999988764

>d1m6ia3 d.87.1.1 (A:478-608) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.0012  Score=49.86  Aligned_cols=40  Identities=8%  Similarity=0.157  Sum_probs=33.9

Q ss_pred             CcEEEEEEeCCEEEEEEeecCChHHhhHHHHHHhCCCCCCh
Q 014997          348 PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDK  388 (414)
Q Consensus       348 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~  388 (414)
                      +|-+.||++|++|||+++ .|--..+...|++|+.+...++
T Consensus        84 gKGVIFYLrd~~VVGVLL-WNvFnrm~iAR~iI~~~~~~~D  123 (131)
T d1m6ia3          84 GKGVIFYLRDKVVVGIVL-WNIFNRMPIARKIIKDGEQHED  123 (131)
T ss_dssp             CEEEEEEEETTEEEEEEE-ESCCSCHHHHHHHHHHCCBCSC
T ss_pred             CceEEEEecCCcEEEEEE-ecccCccHHHHHHHHcCCccch
Confidence            356789999999999997 7888899999999987776554

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.62  E-value=0.00067  Score=60.86  Aligned_cols=37  Identities=22%  Similarity=0.302  Sum_probs=34.1

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR  171 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~  171 (414)
                      .++|||+|++|+-+|..|++.|.+|+|+++++++..+
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~   39 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGN   39 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGG
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccc
Confidence            5899999999999999999999999999999887654

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=96.50  E-value=0.001  Score=60.50  Aligned_cols=36  Identities=25%  Similarity=0.267  Sum_probs=31.5

Q ss_pred             CeEEEECCChHHHHHHHHHH-----hCCCcEEEEeeCCccc
Q 014997          134 KKVVVVGGGYIGMEVAAAAV-----GWKLDTTIIFPENHLL  169 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~-----~~g~~Vtlv~~~~~~l  169 (414)
                      -.|+|||||++|+-+|..|+     +.|.+|+|+++.+.+.
T Consensus         8 yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~   48 (360)
T d1pn0a1           8 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKV   48 (360)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCC
T ss_pred             CCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCC
Confidence            46999999999999999996     5799999999987654

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=96.49  E-value=1.8e-05  Score=67.88  Aligned_cols=99  Identities=18%  Similarity=0.177  Sum_probs=61.1

Q ss_pred             HHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCC-----CEEEecC-HHHHHHHHH
Q 014997           55 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP-----GVHYIRD-VADADALIS  128 (414)
Q Consensus        55 ~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~-----gv~~~~~-~~~~~~~~~  128 (414)
                      .+++.+|++..+.... .+  ...+. .+++.+.++++++|||+.|. .|.+|+.+.-     ++.+... ....+... 
T Consensus       100 ~l~~~gV~v~~~~~~~-~~--~~~~~-~~~~~~~~~~~iiatG~~p~-ip~ip~~~~l~l~~~gv~~~~~~~i~~d~~~-  173 (217)
T d1gesa1         100 VLGKNNVDVIKGFARF-VD--AKTLE-VNGETITADHILIATGGRPS-HPREPANDNINLEAAGVKTNEKGYIVVDKYQ-  173 (217)
T ss_dssp             HHHHTTCEEEESCCEE-EE--TTEEE-ETTEEEEEEEEEECCCEEEC-CCEEESCTTSCHHHHTCCBCTTSCBCCCTTS-
T ss_pred             HHhCCeEEEEeeeccc-ce--eeeec-CCCceeeeeeeeeecCcccc-CCCCCCcCCcccccccEEEcCCccEeeCchh-
Confidence            4567799988765443 22  22333 35778999999999999986 4544442211     1111100 00000000 


Q ss_pred             hhcCCCeEEEECCChHHHHHHHHHHhCCCcEE
Q 014997          129 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT  160 (414)
Q Consensus       129 ~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vt  160 (414)
                       ....++|.+||+|.+|+|+|..+.+.|.+|+
T Consensus       174 -~t~~~~i~~iG~g~~g~ela~~~~~~G~~v~  204 (217)
T d1gesa1         174 -NTNIEGIYAVGDNTGAVELTPVAVAAGRRLS  204 (217)
T ss_dssp             -BCSSTTEEECSGGGTSCCCHHHHHHHHHHHH
T ss_pred             -ccCCCcEEEECCCccHHHHHHHHHHHHHHHH
Confidence             0134689999999999999999999998775

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.48  E-value=0.002  Score=49.20  Aligned_cols=46  Identities=22%  Similarity=0.399  Sum_probs=37.8

Q ss_pred             CHhHHHHcCCeEEcCCcEEEEeCCCC--EEEeCCC---cEEecCeEEEccC
Q 014997           52 TPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSG---KLLKYGSLIVATG   97 (414)
Q Consensus        52 ~~~~~~~~~i~~~~~~~V~~id~~~~--~V~~~~g---~~~~yd~LviAtG   97 (414)
                      ..++++++||+++++++|++++.++.  +|++.++   +++.+|+|++|+|
T Consensus        69 l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          69 AQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             HHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred             HHHHHHhcCceeecCcEEEEEEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence            46788899999999999999987765  4555443   5799999999998

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.39  E-value=0.0063  Score=45.71  Aligned_cols=34  Identities=18%  Similarity=0.219  Sum_probs=31.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      ++++|+|||+|.+|..-|..|.+.|.+|+++...
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~   44 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            5899999999999999999999999999998754

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=96.37  E-value=0.0031  Score=47.83  Aligned_cols=45  Identities=13%  Similarity=0.387  Sum_probs=38.7

Q ss_pred             CHhHHHHcCCeEEcCCcEEEEeCCC---CEEEeCCCcEEecCeEEEcc
Q 014997           52 TPEWYKEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVAT   96 (414)
Q Consensus        52 ~~~~~~~~~i~~~~~~~V~~id~~~---~~V~~~~g~~~~yd~LviAt   96 (414)
                      ..+.+++.||+++++++|++++...   ..|++++|+++++|.+|+|.
T Consensus        70 l~~~l~~~GV~v~~~~~v~~ie~~~~~~~~v~~~~G~~i~~D~Vi~AI  117 (117)
T d1aoga2          70 LTKQLTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAI  117 (117)
T ss_dssp             HHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECS
T ss_pred             HHHHHHhcCcEEEcCCEEEEEEEcCCCeEEEEECCCcEEEeCEEEEeC
Confidence            4677899999999999999997532   36899999999999999983

>d3lada3 d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.31  E-value=0.0017  Score=49.93  Aligned_cols=63  Identities=19%  Similarity=0.139  Sum_probs=50.8

Q ss_pred             EEEEEEe--CCEEEEEEeecCChHHhhHHHH-HHhCCCCCCh-hh-hcCCCcHHHHHHHHhcCCCccc
Q 014997          350 IATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVDK-AK-LQQASSVEEALEIARAALPVEA  412 (414)
Q Consensus       350 ~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~-l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~  412 (414)
                      |.++.++  +++|+|+.+++.++.++...-. +++.+.+++. .+ ...||+++|++++|++.+.+++
T Consensus        53 ~vKlv~d~~t~~ILGa~ivg~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~Aa~~~~~~~  120 (124)
T d3lada3          53 FVKVIADAKTDRVLGVHVIGPSAAELVQQGAIAMEFGTSAEDLGMMVFAHPALSEALHEAALAVSGHA  120 (124)
T ss_dssp             EEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSCCCSSCSHHHHHHHHHHHTTCC
T ss_pred             EEEEEEECCCCEEEEEEEEcccHHHHHHHHHHHHHcCCCHHHHHhCCccCCCHHHHHHHHHHHhcCCC
Confidence            6677764  5899999998888888766554 5788998888 33 6889999999999999887653

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=96.23  E-value=0.0035  Score=53.97  Aligned_cols=47  Identities=23%  Similarity=0.499  Sum_probs=39.9

Q ss_pred             hHHHHcCCeEEcCCcEEEEeCCCC---EEEeCCCcEEecCeEEEccCCCC
Q 014997           54 EWYKEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTA  100 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~~id~~~~---~V~~~~g~~~~yd~LviAtG~~~  100 (414)
                      +.+++.|++++.+++|+.|..++.   .|.+++|+.+.+|+||+|||+..
T Consensus       118 ~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vI~AtGg~S  167 (251)
T d2i0za1         118 TRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKS  167 (251)
T ss_dssp             HHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCEEECCCCSS
T ss_pred             HHHHHcCCcccCCcEEEEEEEECCEEEEEEeCCCCeEecCeEEEccCCcc
Confidence            456678999999999999987654   46788999999999999999864

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.21  E-value=0.0014  Score=52.18  Aligned_cols=34  Identities=24%  Similarity=0.492  Sum_probs=31.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      ++++++|||||.+|.+-|..|.+.|.+||++.+.
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            6899999999999999999999999999999653

>d1xdia2 d.87.1.1 (A:349-466) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.14  E-value=0.0025  Score=48.50  Aligned_cols=60  Identities=17%  Similarity=0.164  Sum_probs=47.7

Q ss_pred             EEEEEEe--CCEEEEEEeecCChHHhhHHHH-HHhCCCCCChhh--hcCCCcHHHHHHHHhcCCC
Q 014997          350 IATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVDKAK--LQQASSVEEALEIARAALP  409 (414)
Q Consensus       350 ~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~-l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  409 (414)
                      |.++.++  +++|+|+.+++.++.++...-. +|+.+.+++.-.  +..||+++|++++|++.+.
T Consensus        53 ~vKlv~d~~~~~ilGa~ivG~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~aa~~l~  117 (118)
T d1xdia2          53 FVKIFCRRSTGVVIGGVVVAPIASELILPIAVAVQNRITVNELAQTLAVYPSLSGSITEAARRLM  117 (118)
T ss_dssp             EEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSBCCSSSTHHHHHHHHHHHC
T ss_pred             heEEEEecCCCceEEEEEEcCcHHHHHHHHHHHHHcCCCHHHHhhCCCCCCCHHHHHHHHHHHHh
Confidence            5666664  5899999998888888765554 578888888833  6899999999999998764

>d1dxla3 d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.03  E-value=0.0033  Score=48.23  Aligned_cols=63  Identities=14%  Similarity=0.155  Sum_probs=50.2

Q ss_pred             EEEEEEe--CCEEEEEEeecCChHHhhHHHH-HHhCCCCCCh-hh-hcCCCcHHHHHHHHhcCCCccc
Q 014997          350 IATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVDK-AK-LQQASSVEEALEIARAALPVEA  412 (414)
Q Consensus       350 ~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~-l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~  412 (414)
                      |.++.++  +++|+|+.+++..+.++...-. +|+.+.+++. .+ ...||++.|++++|++.+.+.+
T Consensus        53 ~~Klv~d~~~~~ilG~~ivG~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~~~~aa~~~~~~~  120 (123)
T d1dxla3          53 LVKIIAEKETDKILGVHIMAPNAGELIHEAAIALQYDASSEDIARVCHAHPTMSEAIKEAAMATYDKP  120 (123)
T ss_dssp             EEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCTTHHHHHHHHHHHSCC
T ss_pred             eEEEEEECCCCEEEEEEEehhhHHHHHHHHHHHHHcCCcHHHHhhCCCCCCCHHHHHHHHHHHHcCCC
Confidence            6666665  4899999998888888776555 5789998887 33 6889999999999999876643

>d1lvla3 d.87.1.1 (A:336-458) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.91  E-value=0.0027  Score=48.70  Aligned_cols=63  Identities=11%  Similarity=0.013  Sum_probs=49.4

Q ss_pred             EEEEEEe--CCEEEEEEeecCChHHhhHHHH-HHhCCCCCCh-hh-hcCCCcHHHHHHHHhcCCCccc
Q 014997          350 IATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVDK-AK-LQQASSVEEALEIARAALPVEA  412 (414)
Q Consensus       350 ~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~-l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~  412 (414)
                      +.++.++  +++|+|+.+++..+.++...-. +++.+.+++. .+ ...||+++|++++|++++.+.+
T Consensus        53 ~vklv~d~~t~~ILG~~ivG~~A~elI~~~~lai~~~~t~~~l~~~i~~hPT~sE~~~~aa~~~~~~~  120 (123)
T d1lvla3          53 FVRVVARRDNHLILGWQAVGVAVSELSTAFAQSLEMGACLEDVAGTIHAHPTLGEAVQEAALRALGHA  120 (123)
T ss_dssp             EEEEEEETTTCBEEEEEEEETTGGGHHHHHHHHHHHTCBHHHHHTSCCCTTCTTHHHHHHHHHHTTCC
T ss_pred             heeeeeecccccceEEEEEeCchhhHHHHHHHHHHcCCCHHHHhcCCCCCCCHHHHHHHHHHHHcCCC
Confidence            5566554  5899999998888888776555 5688888888 33 6899999999999999877643

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=95.88  E-value=0.0049  Score=46.82  Aligned_cols=46  Identities=22%  Similarity=0.342  Sum_probs=36.4

Q ss_pred             CHhHHHHcCCeEEcCCcEEEEeCCCC----EE---EeCCCcEEecCeEEEccC
Q 014997           52 TPEWYKEKGIEMIYQDPVTSIDIEKQ----TL---ITNSGKLLKYGSLIVATG   97 (414)
Q Consensus        52 ~~~~~~~~~i~~~~~~~V~~id~~~~----~V---~~~~g~~~~yd~LviAtG   97 (414)
                      ..+.+++.+|++++++++++++.+..    .+   ...+++++++|.+|+|+|
T Consensus        69 ~~~~l~~~gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          69 VLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             HHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred             hhhhhhccccEEEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence            46778899999999999999986642    11   234557899999999998

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.84  E-value=0.004  Score=50.52  Aligned_cols=34  Identities=15%  Similarity=0.270  Sum_probs=31.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      .|+|+|+|+|.+|..+|..|.+.|.+|++++|..
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~   35 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL   35 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCh
Confidence            5899999999999999999999999999998864

>d1ojta3 d.87.1.1 (A:471-598) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=95.79  E-value=0.0032  Score=48.67  Aligned_cols=62  Identities=10%  Similarity=0.066  Sum_probs=49.2

Q ss_pred             EEEEEEe--CCEEEEEEeecCChHHhhHHHH-HHhCCCCCCh-hh-hcCCCcHHHHHHHHhcCCCcc
Q 014997          350 IATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVDK-AK-LQQASSVEEALEIARAALPVE  411 (414)
Q Consensus       350 ~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~-l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~  411 (414)
                      |.++.++  +|+|+|+.+++.++.++...-. +++.+.+++. .+ ...||+++|++.+|+..+.+.
T Consensus        53 ~~Kli~d~~~g~iLGa~ivG~~A~ElI~~~~lai~~~~t~~~l~~~i~~hPT~sE~l~~Aa~~~~~~  119 (128)
T d1ojta3          53 FTKLIFDAETGRIIGGGIVGPNGGDMIGEVCLAIEMGCDAADIGKTIHPHPTLGESIGMAAEVALGT  119 (128)
T ss_dssp             EEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSSSTTHHHHHHHHHHTC
T ss_pred             eEEEEEeCCCCeEEEEEEEhhhHHHHHHHHHHHHHcCCCHHHHhhCcCcCCCHHHHHHHHHHHHcCC
Confidence            6676664  5899999998888888776555 5688888888 33 688999999999999887653

>d1ebda3 d.87.1.1 (A:347-461) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.72  E-value=0.0055  Score=46.27  Aligned_cols=59  Identities=7%  Similarity=0.040  Sum_probs=46.5

Q ss_pred             EEEEEEe--CCEEEEEEeecCChHHhhHHHH-HHhCCCCCChh-h-hcCCCcHHHHHHHHhcCC
Q 014997          350 IATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVDKA-K-LQQASSVEEALEIARAAL  408 (414)
Q Consensus       350 ~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~-l~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~  408 (414)
                      |.++.++  +++|+|+.+++.++.++...-. +++.+.+++.- . ...||+++|++++|+..+
T Consensus        51 ~vKli~~~~~~~iLG~~ivg~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~~~~Aa~~a  114 (115)
T d1ebda3          51 FLKLVVRKEDGVIIGAQIIGPNASDMIAELGLAIEAGMTAEDIALTIHAHPTLGEIAMEAAEVA  114 (115)
T ss_dssp             EEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHHTCBHHHHHHSCCCTTSSTHHHHHHHHHT
T ss_pred             EEEEEEeCCcceEEEEEEEcCCHHHHHHHHHHHHHcCCCHHHHhhCCCCCCCHHHHHHHHHHHh
Confidence            5666664  5899999998888888776555 56888888873 3 688999999999998754

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.0075  Score=50.01  Aligned_cols=38  Identities=26%  Similarity=0.458  Sum_probs=34.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ  170 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  170 (414)
                      -++|.|||+|.+|..+|..++..|.+|+++++.+..+.
T Consensus         4 IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~   41 (192)
T d1f0ya2           4 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILA   41 (192)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred             eEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHH
Confidence            37999999999999999999999999999998875443

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.47  E-value=0.0073  Score=46.04  Aligned_cols=44  Identities=14%  Similarity=0.243  Sum_probs=36.3

Q ss_pred             CHhHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCC
Q 014997           52 TPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGC   98 (414)
Q Consensus        52 ~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~   98 (414)
                      ..++++++||++++++++++++.+  .+ +.+++.+++|.+|+|||.
T Consensus        78 ~~~~l~~~GV~~~~~~~v~~~~~~--~v-~~~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2          78 IKDMLEETGVKFFLNSELLEANEE--GV-LTNSGFIEGKVKICAIGI  121 (122)
T ss_dssp             HHHHHHHTTEEEECSCCEEEECSS--EE-EETTEEEECSCEEEECCE
T ss_pred             HHHHHHHCCcEEEeCCEEEEEeCC--EE-EeCCCEEECCEEEEEEEe
Confidence            457788999999999999988654  34 446778999999999994

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=95.42  E-value=0.011  Score=51.00  Aligned_cols=48  Identities=17%  Similarity=0.259  Sum_probs=37.6

Q ss_pred             HhHHHHcCCeEEcCCcEEEEeCCCC-----EEEeCCCcEEecCeEEEccCCCC
Q 014997           53 PEWYKEKGIEMIYQDPVTSIDIEKQ-----TLITNSGKLLKYGSLIVATGCTA  100 (414)
Q Consensus        53 ~~~~~~~~i~~~~~~~V~~id~~~~-----~V~~~~g~~~~yd~LviAtG~~~  100 (414)
                      .+.+++.||+++++++|+++.....     .+...++.++.+|+||+|||+..
T Consensus       116 ~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VIiAtGG~S  168 (253)
T d2gqfa1         116 KSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLS  168 (253)
T ss_dssp             HHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEECCCCSS
T ss_pred             HHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCEEEEcCCccc
Confidence            3445678999999999999875443     34455777899999999999874

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=95.34  E-value=0.0085  Score=48.80  Aligned_cols=34  Identities=21%  Similarity=-0.000  Sum_probs=31.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      .|++.|||+|..|.-+|..|++.|.+|+++.|.+
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3789999999999999999999999999998754

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.20  E-value=0.0058  Score=46.68  Aligned_cols=46  Identities=24%  Similarity=0.313  Sum_probs=33.0

Q ss_pred             CHhHHHHcCCeEEcCCcEEEEeCCC----C--EEEeCC---Cc--EEecCeEEEccC
Q 014997           52 TPEWYKEKGIEMIYQDPVTSIDIEK----Q--TLITNS---GK--LLKYGSLIVATG   97 (414)
Q Consensus        52 ~~~~~~~~~i~~~~~~~V~~id~~~----~--~V~~~~---g~--~~~yd~LviAtG   97 (414)
                      ..+.+++.||+++++++|+++....    .  .+++..   ++  .+++|.|++|+|
T Consensus        66 l~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          66 IGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             HHHHHHHTTEEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred             HHHHHHHCCCEEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence            4677899999999999998885321    1  333332   22  467999999998

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=95.14  E-value=0.0097  Score=54.24  Aligned_cols=33  Identities=21%  Similarity=0.135  Sum_probs=30.7

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  167 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  167 (414)
                      .|+|||+|+.|+-+|..|++.|.+|.|+|++.+
T Consensus         4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~   36 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQL   36 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             eEEEeCcCHHHHHHHHHHHHCcCeEEEEecCCC
Confidence            589999999999999999999999999999753

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=95.08  E-value=0.012  Score=47.10  Aligned_cols=34  Identities=18%  Similarity=0.109  Sum_probs=31.4

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  168 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  168 (414)
                      ||+|+|+|.+|.-+|..|++.|.+|+++.|.+..
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~   35 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQP   35 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCS
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHH
Confidence            6899999999999999999999999999987643

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=95.06  E-value=0.011  Score=48.70  Aligned_cols=38  Identities=18%  Similarity=0.214  Sum_probs=33.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  169 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l  169 (414)
                      +-++|.|||+|.+|..+|..++..|.+|+++++.+.-+
T Consensus         3 ~I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l   40 (186)
T d1wdka3           3 DVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGI   40 (186)
T ss_dssp             CCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHH
Confidence            35789999999999999999999999999999876544

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.03  E-value=0.015  Score=44.35  Aligned_cols=45  Identities=11%  Similarity=0.128  Sum_probs=37.1

Q ss_pred             CHhHHHHcCCeEEcCCcEEEEeCCCC-EEEeCCCcEEecCeEEEcc
Q 014997           52 TPEWYKEKGIEMIYQDPVTSIDIEKQ-TLITNSGKLLKYGSLIVAT   96 (414)
Q Consensus        52 ~~~~~~~~~i~~~~~~~V~~id~~~~-~V~~~~g~~~~yd~LviAt   96 (414)
                      ..+++++.||++++++++++++.+++ ...+.+|+++++|.+|+|.
T Consensus        78 ~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~dg~~i~~D~vi~aI  123 (123)
T d1nhpa2          78 LTEEMEANNITIATGETVERYEGDGRVQKVVTDKNAYDADLVVVAV  123 (123)
T ss_dssp             HHHHHHTTTEEEEESCCEEEEECSSBCCEEEESSCEEECSEEEECS
T ss_pred             HHHHhhcCCeEEEeCceEEEEEcCCCEEEEEeCCCEEECCEEEEEC
Confidence            46778889999999999999987654 3346678889999999983

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=94.91  E-value=0.025  Score=42.60  Aligned_cols=45  Identities=13%  Similarity=0.239  Sum_probs=36.8

Q ss_pred             CHhHHHHcCCeEEcCCcEEEEeCCC---CEEEeCCCcEE-ecCeEEEcc
Q 014997           52 TPEWYKEKGIEMIYQDPVTSIDIEK---QTLITNSGKLL-KYGSLIVAT   96 (414)
Q Consensus        52 ~~~~~~~~~i~~~~~~~V~~id~~~---~~V~~~~g~~~-~yd~LviAt   96 (414)
                      ..+.+++.||+++++++|++++...   ..|++++|+.+ .||.||+|.
T Consensus        69 ~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~v~~~~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2          69 LENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCV  117 (117)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECC
T ss_pred             HHHHHHhCCCEEEECCEEEEEEEcCCCeEEEEECCCCEEEeCCEEEEeC
Confidence            4567888999999999999997432   36889999877 589999983

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.89  E-value=0.013  Score=44.65  Aligned_cols=44  Identities=20%  Similarity=0.356  Sum_probs=33.3

Q ss_pred             CHhHHHHcCCeEEcCCcEEEEeCCC--CE--EEeCCC-----cEEecCeEEEc
Q 014997           52 TPEWYKEKGIEMIYQDPVTSIDIEK--QT--LITNSG-----KLLKYGSLIVA   95 (414)
Q Consensus        52 ~~~~~~~~~i~~~~~~~V~~id~~~--~~--V~~~~g-----~~~~yd~LviA   95 (414)
                      ..+.+++.||+++++++|++++..+  ..  +++.++     +++++|.|++|
T Consensus        70 l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          70 TQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             HHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             HHHHHHhccceEEeCCEEEEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence            4677889999999999999987543  33  344333     47999999987

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=94.88  E-value=0.012  Score=53.68  Aligned_cols=33  Identities=24%  Similarity=0.276  Sum_probs=30.6

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  167 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  167 (414)
                      .|+|||+|..|+-+|..|++.|.+|+|+|++.+
T Consensus         9 dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~   41 (370)
T d3coxa1           9 PALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS   41 (370)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            589999999999999999999999999998743

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=94.76  E-value=0.013  Score=53.12  Aligned_cols=34  Identities=29%  Similarity=0.297  Sum_probs=31.4

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  168 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  168 (414)
                      .++|||+|..|+-+|..|++.|.+|.|+|++...
T Consensus         6 DviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~   39 (379)
T d2f5va1           6 DVVIVGSGPIGCTYARELVGAGYKVAMFDIGEID   39 (379)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             cEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCC
Confidence            6899999999999999999999999999987543

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.65  E-value=0.023  Score=43.64  Aligned_cols=32  Identities=19%  Similarity=0.276  Sum_probs=29.7

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      +|+|+|+|..|..+|..|.+.|.+|+++++.+
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~   33 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   33 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCCh
Confidence            68999999999999999999999999998754

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=94.56  E-value=0.013  Score=50.87  Aligned_cols=46  Identities=24%  Similarity=0.289  Sum_probs=38.3

Q ss_pred             hHHHHcCCeEEcCCcEEEEeCCCC--EEEeCCCcEEecCeEEEccCCCC
Q 014997           54 EWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA  100 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~~id~~~~--~V~~~~g~~~~yd~LviAtG~~~  100 (414)
                      +.+++.|++++.+++|+.|+.+++  .|.+++| ++.+|+||+|+|...
T Consensus       159 ~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~vV~AaG~~s  206 (276)
T d1ryia1         159 KAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWS  206 (276)
T ss_dssp             HHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGT
T ss_pred             HHHHHcCCEEecceEEEeEEeecceEEEecCCe-EEEcCEEEECCCccH
Confidence            445678999999999999987765  6777777 599999999999864

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.53  E-value=0.014  Score=44.62  Aligned_cols=46  Identities=9%  Similarity=0.177  Sum_probs=36.1

Q ss_pred             CHhHHHHcCCeEEcCCcEEEEeCCCC--EEEeC--CC--cEEecCeEEEccC
Q 014997           52 TPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITN--SG--KLLKYGSLIVATG   97 (414)
Q Consensus        52 ~~~~~~~~~i~~~~~~~V~~id~~~~--~V~~~--~g--~~~~yd~LviAtG   97 (414)
                      ..+.++++||+++++++++++..+..  .|++.  +|  +++++|+|++|+|
T Consensus        73 l~~~l~~~gv~~~~~~~v~~v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~G  124 (125)
T d1ojta2          73 WQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAG  124 (125)
T ss_dssp             HHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCC
T ss_pred             HHHHHHHcCcccccCcEEEEEEEcCCcEEEEEEeCCCCeEEEEcCEEEEecC
Confidence            45778889999999999999986554  44443  33  4699999999999

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=94.30  E-value=0.01  Score=52.52  Aligned_cols=45  Identities=16%  Similarity=0.206  Sum_probs=37.6

Q ss_pred             hHHHHcCCeEEcCCcEEEEeCCCCE---EEeCCCcEEecCeEEEccCCC
Q 014997           54 EWYKEKGIEMIYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGCT   99 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~~id~~~~~---V~~~~g~~~~yd~LviAtG~~   99 (414)
                      +.+++.|++++.+++|+++..++..   |.+++| ++.+|+||+|+|..
T Consensus       156 ~~a~~~gv~i~~~~~V~~i~~~~~~v~~V~T~~g-~i~a~~VV~aaG~~  203 (305)
T d1pj5a2         156 KRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFW  203 (305)
T ss_dssp             HHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGG
T ss_pred             hhhhcccccccCCceEEEEEEeCCEEEEEeccce-eEECCEEEEecchh
Confidence            4456789999999999999987653   677777 59999999999985

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=94.25  E-value=0.021  Score=49.61  Aligned_cols=47  Identities=23%  Similarity=0.346  Sum_probs=39.0

Q ss_pred             HhHHHHcCCeEEcCCcEEEEeCCCC--EEEeCCCcEEecCeEEEccCCCC
Q 014997           53 PEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA  100 (414)
Q Consensus        53 ~~~~~~~~i~~~~~~~V~~id~~~~--~V~~~~g~~~~yd~LviAtG~~~  100 (414)
                      .+.+++.|++++.+++|++|+.++.  .|.+++| ++.+|+||+|+|...
T Consensus       157 ~~~a~~~Gv~i~~~~~V~~i~~~~~~v~V~t~~g-~i~a~~VViAaG~~s  205 (281)
T d2gf3a1         157 RELAEARGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAWN  205 (281)
T ss_dssp             HHHHHHTTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGGH
T ss_pred             ccccccccccccCCcEEEEEEEECCEEEEEECCc-EEEcCEEEECCCCcc
Confidence            3455778999999999999987665  6778777 599999999999864

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=94.24  E-value=0.022  Score=43.72  Aligned_cols=33  Identities=15%  Similarity=0.161  Sum_probs=30.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      |+++|+|.|..|..+|..|.+.|.+|++++..+
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~   33 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   33 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcH
Confidence            678999999999999999999999999998654

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.19  E-value=0.0044  Score=52.75  Aligned_cols=27  Identities=30%  Similarity=0.396  Sum_probs=23.8

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEE
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTI  161 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtl  161 (414)
                      +|+|||+|.+|+-+|..|++.|.+|++
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v   28 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQ   28 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSS
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceE
Confidence            699999999999999999999876443

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=93.99  E-value=0.078  Score=46.20  Aligned_cols=59  Identities=25%  Similarity=0.492  Sum_probs=43.5

Q ss_pred             CCCeEEEECC-ChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcC
Q 014997          132 KAKKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG  195 (414)
Q Consensus       132 ~~~~vvVvGg-G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~  195 (414)
                      +.++|+|.|| |++|..++..|.++|.+|+++.|.....    ..... .....+...+++++.+
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~----~~~~~-~~~~~~~~~~v~~v~~   61 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVS----NIDKV-QMLLYFKQLGAKLIEA   61 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSS----CHHHH-HHHHHHHTTTCEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCccc----chhHH-HHHhhhccCCcEEEEe
Confidence            3467999996 9999999999999999999998865422    22222 2334567788888753

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=93.97  E-value=0.049  Score=38.67  Aligned_cols=81  Identities=21%  Similarity=0.138  Sum_probs=55.9

Q ss_pred             CeEEEECCChHHH-HHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEE
Q 014997          134 KKVVVVGGGYIGM-EVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV  212 (414)
Q Consensus       134 ~~vvVvGgG~~g~-e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v  212 (414)
                      .++-+||-|=+|| -+|..|.++|.+|+--++..       .     ...+.|++.|++++.+.....            
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~-------~-----~~t~~L~~~Gi~i~~gh~~~~------------   57 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEE-------T-----ERTAYLRKLGIPIFVPHSADN------------   57 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSC-------C-----HHHHHHHHTTCCEESSCCTTS------------
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCC-------C-----hhHHHHHHCCCeEEeeecccc------------
Confidence            3677899888887 47899999999999876543       1     123458999999987642111            


Q ss_pred             EeCCCcEEecCEEEEccCCcCCChhh---hhcCCc
Q 014997          213 KLEDGSTIDADTIVIGIGAKPTVSPF---ERVGLN  244 (414)
Q Consensus       213 ~~~~g~~i~~D~vi~a~G~~p~~~~l---~~~gl~  244 (414)
                            .-.+|+||++++...+...+   ++.+++
T Consensus        58 ------i~~~d~vV~SsAI~~~npel~~A~~~gIp   86 (89)
T d1j6ua1          58 ------WYDPDLVIKTPAVRDDNPEIVRARMERVP   86 (89)
T ss_dssp             ------CCCCSEEEECTTCCTTCHHHHHHHHTTCC
T ss_pred             ------cCCCCEEEEecCcCCCCHHHHHHHHcCCC
Confidence                  12479999999988765543   444554

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=93.50  E-value=0.14  Score=39.89  Aligned_cols=54  Identities=9%  Similarity=0.082  Sum_probs=40.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcC
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG  195 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~  195 (414)
                      ..+++|+|.|..|..++..|.+.|.+|++++..+.         ......+.+...|+.++.+
T Consensus         3 knHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~---------~~~~~~~~~~~~~~~vi~G   56 (153)
T d1id1a_           3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPE---------DDIKQLEQRLGDNADVIPG   56 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCH---------HHHHHHHHHHCTTCEEEES
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEeccch---------hHHHHHHHhhcCCcEEEEc
Confidence            35799999999999999999999999999976542         1222223445668887765

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=93.29  E-value=0.042  Score=39.67  Aligned_cols=78  Identities=17%  Similarity=0.160  Sum_probs=55.1

Q ss_pred             hcCCCeEEEECCChHHHHH-HHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCc
Q 014997          130 LEKAKKVVVVGGGYIGMEV-AAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR  208 (414)
Q Consensus       130 ~~~~~~vvVvGgG~~g~e~-A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~  208 (414)
                      +...+++-+||-|-+|+-. |..|.++|.+|+-.+...       .+     ..+.+++.|++++.+.....+       
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~-------~~-----~~~~L~~~Gi~v~~g~~~~~i-------   65 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD-------GV-----VTQRLAQAGAKIYIGHAEEHI-------   65 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC-------SH-----HHHHHHHTTCEEEESCCGGGG-------
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCC-------Ch-----hhhHHHHCCCeEEECCccccC-------
Confidence            3567899999988888765 999999999999887543       11     124567789998876532111       


Q ss_pred             EEEEEeCCCcEEecCEEEEccCCcCCChh
Q 014997          209 VAAVKLEDGSTIDADTIVIGIGAKPTVSP  237 (414)
Q Consensus       209 ~~~v~~~~g~~i~~D~vi~a~G~~p~~~~  237 (414)
                                 -.+|+||++++...+...
T Consensus        66 -----------~~~d~vV~S~AI~~~npe   83 (96)
T d1p3da1          66 -----------EGASVVVVSSAIKDDNPE   83 (96)
T ss_dssp             -----------TTCSEEEECTTSCTTCHH
T ss_pred             -----------CCCCEEEECCCcCCCCHH
Confidence                       135899999998765443

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.10  E-value=0.042  Score=41.73  Aligned_cols=46  Identities=17%  Similarity=0.276  Sum_probs=34.5

Q ss_pred             CHhHHHHcCCeEEcCCcEEEEeCCCC--EEE---eCCCc------EEecCeEEEccC
Q 014997           52 TPEWYKEKGIEMIYQDPVTSIDIEKQ--TLI---TNSGK------LLKYGSLIVATG   97 (414)
Q Consensus        52 ~~~~~~~~~i~~~~~~~V~~id~~~~--~V~---~~~g~------~~~yd~LviAtG   97 (414)
                      ..+.+++.||++++++++++|.....  .+.   ...|+      .+.+|.|++|||
T Consensus        69 ~~~~l~~~Gv~i~~~~~v~~i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          69 CTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             HHHHHHHTTCEEETTEEEEEEEEETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred             HHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence            46778899999999999999976543  222   23332      468999999998

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.91  E-value=0.069  Score=42.21  Aligned_cols=46  Identities=17%  Similarity=0.284  Sum_probs=36.5

Q ss_pred             HhHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCc-EEecCeEEEccCC
Q 014997           53 PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK-LLKYGSLIVATGC   98 (414)
Q Consensus        53 ~~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~-~~~yd~LviAtG~   98 (414)
                      ...+++.+++++.++++..++.+...+...+.+ .+++|.+|+|+|.
T Consensus       115 ~~~~~~~gv~~~~~~~v~~i~~~gv~~~~~g~e~~i~aD~Vv~A~Gq  161 (162)
T d1ps9a2         115 RTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVICAGQ  161 (162)
T ss_dssp             HHHHHHTTCEEECSCEEEEEETTEEEEEETTEEEEECCSEEEECCCE
T ss_pred             HHHHhhCCeEEEeeeEEEEEcCCCCEEecCCeEEEEECCEEEECCCC
Confidence            455778899999999999999777666554332 5899999999994

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.90  E-value=0.073  Score=42.25  Aligned_cols=37  Identities=27%  Similarity=0.269  Sum_probs=33.5

Q ss_pred             hcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          130 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       130 ~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      +-.+|+++|+|-|.+|-.+|..++.+|.+|++.+..+
T Consensus        21 ~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          21 MIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             eecCCEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            3479999999999999999999999999999998653

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=92.82  E-value=0.05  Score=49.39  Aligned_cols=32  Identities=16%  Similarity=0.136  Sum_probs=30.3

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      .++|||+|..|+-+|..|++.|.+|.|+|++.
T Consensus         4 D~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~   35 (360)
T d1kdga1           4 DYIIVGAGPGGIIAADRLSEAGKKVLLLERGG   35 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHhhCCCeEEEEEccC
Confidence            58999999999999999999999999999985

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=92.72  E-value=0.094  Score=39.18  Aligned_cols=36  Identities=19%  Similarity=0.245  Sum_probs=30.5

Q ss_pred             CCCeEEEECCCh-----------HHHHHHHHHHhCCCcEEEEeeCCc
Q 014997          132 KAKKVVVVGGGY-----------IGMEVAAAAVGWKLDTTIIFPENH  167 (414)
Q Consensus       132 ~~~~vvVvGgG~-----------~g~e~A~~l~~~g~~Vtlv~~~~~  167 (414)
                      ..++|+|+|+|+           .+..++..|++.|.++.++..++.
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPe   49 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPE   49 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChh
Confidence            357999999986           578888899999999999987743

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.44  E-value=0.042  Score=37.87  Aligned_cols=33  Identities=21%  Similarity=0.243  Sum_probs=30.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      |+|.|+|||..|-.++....++|.++.++...+
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~   34 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDA   34 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTS
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCC
Confidence            579999999999999999999999999998764

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.39  E-value=0.1  Score=38.65  Aligned_cols=35  Identities=23%  Similarity=0.341  Sum_probs=31.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  167 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  167 (414)
                      ..+|.|+|||..|..+|....++|.++.++++.+.
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            46799999999999999999999999999987643

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=92.24  E-value=0.096  Score=41.70  Aligned_cols=35  Identities=40%  Similarity=0.544  Sum_probs=31.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      ++.+|+|+|+|..|+..+..+.++|.+|++++.+.
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~   65 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV   65 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence            45789999999999999999999999999998654

>d1onfa3 d.87.1.1 (A:377-495) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=92.22  E-value=0.09  Score=39.43  Aligned_cols=54  Identities=7%  Similarity=-0.010  Sum_probs=41.6

Q ss_pred             EEEEEEe--CCEEEEEEeecCChHHhhHHHH-HHhCCCCCChh-h-hcCCCcHHHHHHH
Q 014997          350 IATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVDKA-K-LQQASSVEEALEI  403 (414)
Q Consensus       350 ~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~-l~~~~~~~~~~-~-~~~~~~~~~~~~~  403 (414)
                      +.++.++  +++|+|+.+++.++.++...-. +|+.+.+++.- + ...||+++|++..
T Consensus        59 ~~kli~~~~~~~IlGa~ivG~~A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~~~~  117 (119)
T d1onfa3          59 YLKLVCVGKDELIKGLHIIGLNADEIVQGFAVALKMNATKKDFDETIPIHPTAAEEFLT  117 (119)
T ss_dssp             EEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCSTTHHHH
T ss_pred             eEEEEEecCCCcEEEEEEeCCCHHHHHHHHHHHHHcCCcHHHHhhCcccCCCHHHHHHh
Confidence            4455544  5899999998888988876655 56888888883 3 6899999999864

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=92.15  E-value=0.19  Score=43.15  Aligned_cols=58  Identities=24%  Similarity=0.426  Sum_probs=42.7

Q ss_pred             CCeEEEECC-ChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEc
Q 014997          133 AKKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVK  194 (414)
Q Consensus       133 ~~~vvVvGg-G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~  194 (414)
                      .++|+|.|+ |++|-.++..|.+.|.+|+.+.|.+....   ....... ...+...+++++.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~---~~~~~~~-~~~~~~~~~~~~~   61 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASS---NSEKAQL-LESFKASGANIVH   61 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTT---THHHHHH-HHHHHTTTCEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcccc---chhHHHH-HHhhccCCcEEEE
Confidence            478999996 99999999999999999999998764432   2222222 3445677787764

>d3grsa3 d.87.1.1 (A:364-478) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.15  E-value=0.06  Score=40.23  Aligned_cols=53  Identities=9%  Similarity=0.028  Sum_probs=41.6

Q ss_pred             EEEEEEe--CCEEEEEEeecCChHHhhHHHH-HHhCCCCCChhh--hcCCCcHHHHHH
Q 014997          350 IATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVDKAK--LQQASSVEEALE  402 (414)
Q Consensus       350 ~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~-l~~~~~~~~~~~--~~~~~~~~~~~~  402 (414)
                      +.++.++  +++|+|+.++++.+.++...-. +++.+.+++.-.  ...||+++|++.
T Consensus        55 ~~k~i~~~~~~~ilG~~ivG~~A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~  112 (115)
T d3grsa3          55 VMKMVCANKEEKVVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNTVAIHPTSSEELV  112 (115)
T ss_dssp             EEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGG
T ss_pred             eEEEEEecCCceEEEEEEeccCHHHHHHHHHHHHHcCCCHHHHhhCccCCCCHHHHHH
Confidence            5566664  6899999998888888876555 568888888833  689999999875

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=91.87  E-value=0.11  Score=41.99  Aligned_cols=36  Identities=19%  Similarity=0.159  Sum_probs=32.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  167 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  167 (414)
                      ++-+|+|+|+|..|+..|....++|.+|++++.+..
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~   63 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA   63 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHH
Confidence            467999999999999999999999999999987653

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.76  E-value=0.11  Score=42.74  Aligned_cols=32  Identities=16%  Similarity=0.255  Sum_probs=29.5

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      +|.|||.|++|+-+|..|++.|.+|+.++..+
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            58999999999999999999999999998754

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=91.75  E-value=0.09  Score=46.31  Aligned_cols=48  Identities=21%  Similarity=0.218  Sum_probs=38.8

Q ss_pred             CHhHHHHcCC--eEEcCCcEEEEeC--CC--CEEEeCCCcEEecCeEEEccCCC
Q 014997           52 TPEWYKEKGI--EMIYQDPVTSIDI--EK--QTLITNSGKLLKYGSLIVATGCT   99 (414)
Q Consensus        52 ~~~~~~~~~i--~~~~~~~V~~id~--~~--~~V~~~~g~~~~yd~LviAtG~~   99 (414)
                      ..++++++++  +++++++|+++..  +.  -.|.+.++.++++|+||+|||..
T Consensus        91 l~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~l  144 (298)
T d1w4xa1          91 INFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQL  144 (298)
T ss_dssp             HHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSC
T ss_pred             HHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeeccc
Confidence            4455677888  5999999999863  32  38999999999999999999963

>d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=91.54  E-value=0.077  Score=41.19  Aligned_cols=39  Identities=18%  Similarity=0.084  Sum_probs=33.5

Q ss_pred             HHcCCeEEcCC--cEEEEeCCCCEEEeCCCcEEecCeEEEc
Q 014997           57 KEKGIEMIYQD--PVTSIDIEKQTLITNSGKLLKYGSLIVA   95 (414)
Q Consensus        57 ~~~~i~~~~~~--~V~~id~~~~~V~~~~g~~~~yd~LviA   95 (414)
                      ++.+|+++.+.  ++.++|...+++.+.+|+++.||.|.+-
T Consensus        99 ~~~~I~~~~~~~~~~v~vd~~~~~~~~~~Ge~v~yD~l~vv  139 (141)
T d1fcda2          99 ENAMIEWHPGPDSAVVKVDGGEMMVETAFGDEFKADVINLI  139 (141)
T ss_dssp             SSCSEEEECSSTTCEEEEEETTTEEEETTCCEEECSEEEEC
T ss_pred             HhcCceeeecCCceEEeecCCcEEEEeCCCcEEeeeEEEeC
Confidence            35789999764  5889999999999999999999999873

>d1feca3 d.87.1.1 (A:358-485) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=91.53  E-value=0.044  Score=41.89  Aligned_cols=56  Identities=14%  Similarity=0.134  Sum_probs=42.7

Q ss_pred             EEEEEEe--CCEEEEEEeecCChHHhhHHHH-HHhCCCCCCh-hh-hcCCCcHHHHHHHHh
Q 014997          350 IATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVDK-AK-LQQASSVEEALEIAR  405 (414)
Q Consensus       350 ~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~-l~~~~~~~~~-~~-~~~~~~~~~~~~~~~  405 (414)
                      +.++.++  +|+|+|+.+++.++.++...-. +++.+.+++. .. +..||+++|++....
T Consensus        54 ~~klv~~~~~g~iLGa~ivG~~A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~~~  114 (128)
T d1feca3          54 MVRIVTNHADGEVLGVHMLGDSSPEIIQSVAICLKMGAKISDFYNTIGVHPTSAEELCSMR  114 (128)
T ss_dssp             EEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGSCC
T ss_pred             eEEEeecCCCCceeEEEEECCCHHHHHHHHHHHHHcCCcHHHHhcCcCCCCcHHHHHHHHH
Confidence            4455554  6899999998888888876555 5688888888 33 688999999886543

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=91.50  E-value=0.14  Score=38.44  Aligned_cols=45  Identities=13%  Similarity=0.337  Sum_probs=34.1

Q ss_pred             CHhHHHHcCCeEEcCCcEEEEeCCCC--EEE--eC-CC--cEEecCeEEEcc
Q 014997           52 TPEWYKEKGIEMIYQDPVTSIDIEKQ--TLI--TN-SG--KLLKYGSLIVAT   96 (414)
Q Consensus        52 ~~~~~~~~~i~~~~~~~V~~id~~~~--~V~--~~-~g--~~~~yd~LviAt   96 (414)
                      ..+.+++.||+++++++|.+++..+.  +|.  .. +|  +.+++|+|++|.
T Consensus        72 l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          72 FQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             HHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred             hhhhhhcccceEEcCCceEEEEEccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence            46788999999999999999986543  333  32 33  358999999983

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=91.15  E-value=0.1  Score=47.90  Aligned_cols=34  Identities=24%  Similarity=0.317  Sum_probs=30.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhCC-CcEEEEeeCCc
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENH  167 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~  167 (414)
                      -.++|||+|..|+-+|..|++.+ .+|.|+|+++.
T Consensus        25 yD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~   59 (391)
T d1gpea1          25 YDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY   59 (391)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred             eeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCC
Confidence            36999999999999999999988 69999999964

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=91.06  E-value=0.12  Score=40.29  Aligned_cols=35  Identities=26%  Similarity=0.256  Sum_probs=31.5

Q ss_pred             CCCeEEEEC-CChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          132 KAKKVVVVG-GGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       132 ~~~~vvVvG-gG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      .-++|.||| .|.+|.-+|..|++.|.+|+++.+..
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~   43 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDRED   43 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence            347999999 69999999999999999999998765

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=90.95  E-value=0.16  Score=40.24  Aligned_cols=37  Identities=22%  Similarity=0.264  Sum_probs=32.8

Q ss_pred             hcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          130 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       130 ~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      ++++++|+|+|+|.+|+-++..++.+|.+|+++++.+
T Consensus        24 ~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~   60 (170)
T d1e3ja2          24 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP   60 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEEcccccchhhHhhHhhhcccccccchHH
Confidence            5678999999999999999999999999998887654

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=90.93  E-value=0.37  Score=42.91  Aligned_cols=110  Identities=13%  Similarity=0.175  Sum_probs=66.6

Q ss_pred             hCCcEEEcCceEEEEEecC-CCcEEEEEe---CCCc--EEecCEEEEccCCcCCChhhhhcCCcc---------------
Q 014997          187 QNGVKFVKGASIKNLEAGS-DGRVAAVKL---EDGS--TIDADTIVIGIGAKPTVSPFERVGLNS---------------  245 (414)
Q Consensus       187 ~~gv~i~~~~~v~~i~~~~-~~~~~~v~~---~~g~--~i~~D~vi~a~G~~p~~~~l~~~gl~~---------------  245 (414)
                      ..|+++++++.|.+|..+. +++++.|+.   .+|+  .+.++.||++.|..-...+|..+++..               
T Consensus       230 ~~~~~l~~~a~V~~i~~~~~~~r~~gV~~~d~~~g~~~~i~a~~vilaaGa~~tp~lL~~Sg~~~~~~~~~~~~~~~~~~  309 (379)
T d2f5va1         230 EERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPTNPPELLPS  309 (379)
T ss_dssp             EEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEEEEEEEEECSCHHHHHHHHHHTTSSCCSSCCTTSCCSSSTT
T ss_pred             CCCCEEecCCEEEEEEEeCCCCEEEEEEEEECCCCEEEEEeceEEEeccCccCCHHHHhhcccccccccccccCcccccc
Confidence            4579999999999997654 345666664   4454  588999999999754434444333211               


Q ss_pred             --------cC--CCEEEcCCCCC-CCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997          246 --------SV--GGIQVDGQFRT-RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  302 (414)
Q Consensus       246 --------~~--g~i~vd~~~~t-~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~  302 (414)
                              ++  ..=+||.++++ +++|+|.+ |+.-+|......+    . ......|..+|+.|..
T Consensus       310 ~g~h~mG~~~~~~~~vvd~~~~v~g~~nlyv~-d~sv~p~~~~~nP----t-~t~~alA~r~a~~i~~  371 (379)
T d2f5va1         310 LGSHRMGFDEKEDNCCVNTDSRVFGFKNLFLG-GCGNIPTAYGANP----T-LTAMSLAIKSCEYIKQ  371 (379)
T ss_dssp             TTBTCBCSCTTTTTCSBCTTCBBTTCSSEEEC-SGGGCCSCCCSCS----H-HHHHHHHHHHHHHHHH
T ss_pred             cceeecccCCCCCCccCCCCCcccccCCEEEe-CCcccCCccccCc----H-HHHHHHHHHHHHHHHH
Confidence                    00  11268888887 88999975 4444544321110    1 1234445566666663

>d1gesa3 d.87.1.1 (A:336-450) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=90.92  E-value=0.11  Score=38.78  Aligned_cols=53  Identities=8%  Similarity=-0.069  Sum_probs=40.9

Q ss_pred             EEEEEEe--CCEEEEEEeecCChHHhhHHHH-HHhCCCCCCh-hh-hcCCCcHHHHHH
Q 014997          350 IATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVDK-AK-LQQASSVEEALE  402 (414)
Q Consensus       350 ~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~-l~~~~~~~~~-~~-~~~~~~~~~~~~  402 (414)
                      +.++.++  +++|+|+.+++.++.++...-. +++.+.+++. .+ ...||+++|++.
T Consensus        55 ~~k~v~~~~~~~IlGa~ivG~~A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~  112 (115)
T d1gesa3          55 RMKLVCVGSEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAEEFV  112 (115)
T ss_dssp             EEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGG
T ss_pred             eEEEEEecCCcEEEEEEEECCCHHHHHHHHHHHHHcCCcHHHHhcCcccCCcHHHHHH
Confidence            5566554  6899999998888888876655 5688888888 33 689999999764

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=90.87  E-value=0.13  Score=40.60  Aligned_cols=37  Identities=27%  Similarity=0.264  Sum_probs=33.8

Q ss_pred             hcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          130 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       130 ~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      +-.+|+++|+|-|..|--+|..|+.+|.+|++++..|
T Consensus        20 ~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DP   56 (163)
T d1v8ba1          20 LISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDP   56 (163)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             eecCCEEEEecccccchhHHHHHHhCCCEEEEEecCc
Confidence            4579999999999999999999999999999998654

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=90.83  E-value=0.071  Score=43.64  Aligned_cols=33  Identities=21%  Similarity=0.244  Sum_probs=30.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      ++|+|+|+|..|.-+|..|++.|.+|+++.|.+
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~   40 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   40 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence            579999999999999999999999999987653

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.81  E-value=0.13  Score=40.97  Aligned_cols=38  Identities=26%  Similarity=0.201  Sum_probs=33.6

Q ss_pred             hhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          129 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       129 ~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      .+.++++|+|+|+|.+|+-++..++.+|.+|..+.+.+
T Consensus        24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~   61 (168)
T d1piwa2          24 GCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSS   61 (168)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSS
T ss_pred             CcCCCCEEEEECCCCcchhHHHHhhhccccccccccch
Confidence            45688999999999999999998889999998888765

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=90.59  E-value=0.23  Score=39.51  Aligned_cols=36  Identities=14%  Similarity=0.163  Sum_probs=32.2

Q ss_pred             cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          131 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       131 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      .++++|+|+|+|-++--++..|.+.|.+++++.|..
T Consensus        16 ~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~   51 (170)
T d1nyta1          16 RPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV   51 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCCCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence            468999999999999999999999999999887753

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.45  E-value=0.14  Score=38.01  Aligned_cols=44  Identities=18%  Similarity=0.323  Sum_probs=33.7

Q ss_pred             CHhHHHHcCCeEEcCCcEEEEeCCCC--EEEeC-CC--cEEecCeEEEc
Q 014997           52 TPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITN-SG--KLLKYGSLIVA   95 (414)
Q Consensus        52 ~~~~~~~~~i~~~~~~~V~~id~~~~--~V~~~-~g--~~~~yd~LviA   95 (414)
                      ..+.+++.||+++++++|++++.+..  .|++. +|  +++.+|.|++.
T Consensus        69 l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          69 IKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             HHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEEC
T ss_pred             HHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEEeCCCEEEEEeEEEEEC
Confidence            46778899999999999999986553  34443 44  46999999974

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.19  E-value=0.17  Score=39.97  Aligned_cols=38  Identities=18%  Similarity=0.152  Sum_probs=32.9

Q ss_pred             hhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          129 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       129 ~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      ..+++++|+|+|+|.+|+-++..++.+|.+|..+.+.+
T Consensus        24 ~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~   61 (166)
T d1llua2          24 NARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDD   61 (166)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence            35688999999999999999999999999988886543

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=89.74  E-value=0.25  Score=39.54  Aligned_cols=37  Identities=24%  Similarity=0.186  Sum_probs=31.2

Q ss_pred             hhcCCCeEEEECCChHHHHHHHHHHhCCC-cEEEEeeC
Q 014997          129 SLEKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPE  165 (414)
Q Consensus       129 ~~~~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~  165 (414)
                      .++++++|+|+|+|.+|+-++..++.+|. +|+++++.
T Consensus        24 ~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~   61 (174)
T d1jqba2          24 DIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSR   61 (174)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCC
T ss_pred             CCCCCCEEEEEcCCcchhhhhhhhhcccccccccccch
Confidence            45688999999999999999999999996 57766654

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=89.72  E-value=0.18  Score=39.89  Aligned_cols=31  Identities=26%  Similarity=0.176  Sum_probs=28.5

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      +|.|||.|..|.-+|..|++.|.+|+.++|.
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~   32 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQ   32 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECC
Confidence            5899999999999999999999999988765

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.67  E-value=0.17  Score=40.61  Aligned_cols=32  Identities=16%  Similarity=0.236  Sum_probs=28.8

Q ss_pred             eEEEE-CCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          135 KVVVV-GGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       135 ~vvVv-GgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      +|.|+ |+|.+|..+|..|++.|.+|++..|.+
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            57899 669999999999999999999998865

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.65  E-value=0.2  Score=39.84  Aligned_cols=38  Identities=24%  Similarity=0.253  Sum_probs=31.8

Q ss_pred             hhcCCCeEEEECCChHHHHHHHHHHhCCC-cEEEEeeCC
Q 014997          129 SLEKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPEN  166 (414)
Q Consensus       129 ~~~~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~~  166 (414)
                      .+.++++|+|+|+|.+|+-++..++.+|. +|+++++.+
T Consensus        23 ~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~   61 (171)
T d1pl8a2          23 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA   61 (171)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence            35678999999999999999999999998 577776543

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.52  E-value=0.21  Score=44.02  Aligned_cols=44  Identities=18%  Similarity=0.123  Sum_probs=38.0

Q ss_pred             HHHHcCCeEEcCCcEEEEeCCCC--EEEeCCCcEEecCeEEEccCC
Q 014997           55 WYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGC   98 (414)
Q Consensus        55 ~~~~~~i~~~~~~~V~~id~~~~--~V~~~~g~~~~yd~LviAtG~   98 (414)
                      .+++.|.+++++++|++|+.++.  .|++.+|+++.+|++|+|++.
T Consensus       216 l~~~~g~~i~~~~~v~~I~~~~~~v~v~~~~g~~~~ad~vI~a~p~  261 (383)
T d2v5za1         216 IMDLLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPP  261 (383)
T ss_dssp             HHHHHGGGEEESCCEEEEECSSSSEEEEETTSCEEEESEEEECSCG
T ss_pred             HHHHcCCeEEecCcceEEEecCCeEEEEECCCCEEECCEEEECCCH
Confidence            34667999999999999998765  678899999999999999875

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=89.31  E-value=0.23  Score=40.37  Aligned_cols=35  Identities=31%  Similarity=0.326  Sum_probs=32.2

Q ss_pred             CCCeEEEEC-CChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          132 KAKKVVVVG-GGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       132 ~~~~vvVvG-gG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      ++|+++|.| +|-+|.++|..|++.|.+|+++.|..
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence            789999999 68999999999999999999998865

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=89.31  E-value=0.15  Score=46.48  Aligned_cols=33  Identities=21%  Similarity=0.362  Sum_probs=29.9

Q ss_pred             eEEEECCChHHHHHHHHHHhCC-CcEEEEeeCCc
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENH  167 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~  167 (414)
                      .++|||+|..|+-+|..|++.+ .+|.|+|+++.
T Consensus        19 D~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~   52 (385)
T d1cf3a1          19 DYIIAGGGLTGLTTAARLTENPNISVLVIESGSY   52 (385)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence            6899999999999999999876 79999999864

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=88.99  E-value=0.16  Score=40.97  Aligned_cols=31  Identities=23%  Similarity=0.276  Sum_probs=28.5

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      +|.|||+|..|.-+|..|++.|.+|+++.|.
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~   32 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTE   32 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            6899999999999999999999999998663

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=88.73  E-value=0.27  Score=38.87  Aligned_cols=38  Identities=24%  Similarity=0.122  Sum_probs=32.9

Q ss_pred             hhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          129 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       129 ~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      .++++++|+|+|+|.+|+-.+..++.+|.++.++.+.+
T Consensus        27 ~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~   64 (168)
T d1uufa2          27 QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSE   64 (168)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCCCCEEEEeccchHHHHHHHHhhcccccchhhccch
Confidence            45688999999999999999999999999988776544

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=88.51  E-value=0.2  Score=40.34  Aligned_cols=37  Identities=22%  Similarity=0.206  Sum_probs=31.4

Q ss_pred             hcCCCeEEEECCChHHHHHHHHHHhCCC-cEEEEeeCC
Q 014997          130 LEKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPEN  166 (414)
Q Consensus       130 ~~~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~~  166 (414)
                      ++++++|+|+|+|.+|+-++..++.+|. +|+++++.+
T Consensus        26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~   63 (182)
T d1vj0a2          26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP   63 (182)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred             CCCCCEEEEECCCccchhheeccccccccccccccccc
Confidence            4578999999999999999999999997 677776644

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=88.30  E-value=0.3  Score=39.35  Aligned_cols=35  Identities=23%  Similarity=0.223  Sum_probs=31.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      .++++.|||.|.+|-++|..+..+|.+|..+.+.+
T Consensus        41 ~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~   75 (181)
T d1qp8a1          41 QGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTP   75 (181)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cCceEEEeccccccccceeeeeccccccccccccc
Confidence            47899999999999999999999999999987654

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=88.28  E-value=0.15  Score=45.39  Aligned_cols=45  Identities=9%  Similarity=0.013  Sum_probs=33.5

Q ss_pred             HHHcCCeEEcCCcEEEEeCCCC--EEEeCCCc------EEecCeEEEccCCCC
Q 014997           56 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGK------LLKYGSLIVATGCTA  100 (414)
Q Consensus        56 ~~~~~i~~~~~~~V~~id~~~~--~V~~~~g~------~~~yd~LviAtG~~~  100 (414)
                      ++..+..++++++|++|+.+..  .|++.+++      ...||+||+|||...
T Consensus       123 ~~~~~~~I~~~t~V~~v~~~~~~w~Vt~~~~~~~~~~~~~~~d~VI~AtG~~s  175 (335)
T d2gv8a1         123 AQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYE  175 (335)
T ss_dssp             HGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEEEEESEEEECCCSSS
T ss_pred             HHHhhhcccCceEEEEEEecCCEEEEEEEecCCCCeEEEEEeeEEEEcccccc
Confidence            3456788999999999987765  46654321      457999999999753

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=88.17  E-value=0.2  Score=42.83  Aligned_cols=46  Identities=17%  Similarity=0.159  Sum_probs=33.8

Q ss_pred             hHHHHcCCeEEcCCcEEEEeCCCC--EEEeC-CC--cEEecCeEEEccCCC
Q 014997           54 EWYKEKGIEMIYQDPVTSIDIEKQ--TLITN-SG--KLLKYGSLIVATGCT   99 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~~id~~~~--~V~~~-~g--~~~~yd~LviAtG~~   99 (414)
                      ...++.|++++++++|++|+.++.  +|++. +|  +++.+|+||+|+|+.
T Consensus       227 ~l~~~~g~~i~~~~~V~~I~~~~~~~~v~~~~~~~~~~~~ad~VV~a~p~~  277 (347)
T d2ivda1         227 ALAASLGDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAH  277 (347)
T ss_dssp             HHHHHHGGGEESSEEEEEEECC--CCEEEEEETTEEEEEECSEEEECSCHH
T ss_pred             HHHHHhhcccccCCEEEEEEEeCCeEEEEEEcCCeEEEEECCEEEECCCHH
Confidence            344566999999999999987653  44443 33  468999999999964

>d1h6va3 d.87.1.1 (A:367-499) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.14  E-value=0.15  Score=39.04  Aligned_cols=45  Identities=9%  Similarity=0.008  Sum_probs=37.5

Q ss_pred             CCEEEEEEeecCChHHhhHHHH-HHhCCCCCCh-hh-hcCCCcHHHHH
Q 014997          357 SGKLKGVLVESGSPEEFQLLPT-LARSQPFVDK-AK-LQQASSVEEAL  401 (414)
Q Consensus       357 ~~~~~g~~~~~~~~~~~~~~~~-l~~~~~~~~~-~~-~~~~~~~~~~~  401 (414)
                      +++|+|+.+++.++.++...-. +|+.+.+++. .. ...||++.|++
T Consensus        66 ~~~ILGa~ivg~~A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~~  113 (133)
T d1h6va3          66 NERVVGFHVLGPNAGEVTQGFAAALKCGLTKQQLDSTIGIHPVCAEIF  113 (133)
T ss_dssp             TTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCTTCGGGGG
T ss_pred             cccEEEEEEeCCCHHHHHHHHHHHHHcCCCHHHHhhccccCCCHHHHH
Confidence            6899999998888888876555 5799998888 33 79999999987

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=88.08  E-value=0.15  Score=45.96  Aligned_cols=33  Identities=24%  Similarity=0.281  Sum_probs=29.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  167 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  167 (414)
                      -.++|||+|..|+-+|..|++. .+|.|+|+++.
T Consensus        27 YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~~   59 (351)
T d1ju2a1          27 YDYVIVGGGTSGCPLAATLSEK-YKVLVLERGSL   59 (351)
T ss_dssp             EEEEEECCSTTHHHHHHHHTTT-SCEEEECSSBC
T ss_pred             ccEEEECccHHHHHHHHHhcCC-CCEEEEecCCC
Confidence            3799999999999999999876 89999999864

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=88.08  E-value=0.25  Score=38.94  Aligned_cols=34  Identities=29%  Similarity=0.381  Sum_probs=30.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCC-cEEEEeeC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPE  165 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~  165 (414)
                      .+++++|||+|.+|..++..|...|. +++++.|.
T Consensus        23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt   57 (159)
T d1gpja2          23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT   57 (159)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             ccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence            67899999999999999999999997 57777664

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=87.91  E-value=0.43  Score=38.04  Aligned_cols=38  Identities=13%  Similarity=0.095  Sum_probs=30.9

Q ss_pred             hhcCCCeEEEECCChHHHHHHHHHHhCCCc-EEEEeeCC
Q 014997          129 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPEN  166 (414)
Q Consensus       129 ~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~-Vtlv~~~~  166 (414)
                      .++++++|+|+|+|.+|+-++..++..|.+ |++.+..+
T Consensus        25 ~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~   63 (174)
T d1e3ia2          25 KVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDING   63 (174)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccch
Confidence            356789999999999999999999999985 55555443

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.77  E-value=0.3  Score=39.94  Aligned_cols=36  Identities=25%  Similarity=0.414  Sum_probs=32.0

Q ss_pred             CCeEEEEC-CChHHHHHHHHHHhCCCcEEEEeeCCcc
Q 014997          133 AKKVVVVG-GGYIGMEVAAAAVGWKLDTTIIFPENHL  168 (414)
Q Consensus       133 ~~~vvVvG-gG~~g~e~A~~l~~~g~~Vtlv~~~~~~  168 (414)
                      .|+|+|+| .|.+|..++..|.+.|.+|+++.|.+.-
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~   39 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSR   39 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhh
Confidence            47899999 5999999999999999999999987643

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=87.41  E-value=0.3  Score=42.49  Aligned_cols=45  Identities=16%  Similarity=0.228  Sum_probs=34.9

Q ss_pred             hHHHHcCCeEEcCCcEEEEeCCCCEE--Ee----CCCcEEecCeEEEccCC
Q 014997           54 EWYKEKGIEMIYQDPVTSIDIEKQTL--IT----NSGKLLKYGSLIVATGC   98 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~~id~~~~~V--~~----~~g~~~~yd~LviAtG~   98 (414)
                      ..+++.+++++++++|++|+.++..+  ..    .++++++||+||+|++.
T Consensus       243 ~l~~~~g~~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~aD~VI~A~p~  293 (370)
T d2iida1         243 AMYRDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTS  293 (370)
T ss_dssp             HHHHHTGGGEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCH
T ss_pred             HHHHhcCCccccCceEEEEEEeCCeEEEEEEecCCCeEEEEeeEEEecCCH
Confidence            34567799999999999998776533  32    24568999999999975

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=87.29  E-value=0.28  Score=38.04  Aligned_cols=35  Identities=29%  Similarity=0.284  Sum_probs=29.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCC--CcEEEEeeCC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPEN  166 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g--~~Vtlv~~~~  166 (414)
                      +.++|+|||+|.+|..+|..|+..+  .++.++++.+
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            4579999999999999999998876  5788887654

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=86.88  E-value=0.36  Score=42.79  Aligned_cols=37  Identities=16%  Similarity=0.036  Sum_probs=33.0

Q ss_pred             cCCCeEEEEC-CChHHHHHHHHHHhCCCcEEEEeeCCc
Q 014997          131 EKAKKVVVVG-GGYIGMEVAAAAVGWKLDTTIIFPENH  167 (414)
Q Consensus       131 ~~~~~vvVvG-gG~~g~e~A~~l~~~g~~Vtlv~~~~~  167 (414)
                      -++|+|+|.| +|++|..++..|.+.|.+|..+.|...
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~   43 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP   43 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            4789999998 689999999999999999999987653

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=86.76  E-value=0.33  Score=40.72  Aligned_cols=40  Identities=15%  Similarity=0.215  Sum_probs=32.6

Q ss_pred             cCCeEEcCCcEEEEeCCCC---EEEeCCCcEEecCeEEEccCCC
Q 014997           59 KGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCT   99 (414)
Q Consensus        59 ~~i~~~~~~~V~~id~~~~---~V~~~~g~~~~yd~LviAtG~~   99 (414)
                      .+++++.+ +|..+..++.   .|.+.+|.++.++.||||||+.
T Consensus        81 ~nL~i~q~-~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTF  123 (230)
T d2cula1          81 RPLHLFQA-TATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSF  123 (230)
T ss_dssp             TTEEEEEC-CEEEEEEETTEEEEEEETTSCCEECSEEEECCTTC
T ss_pred             cCHHHHhc-cceeeEecccceeeEEeccccEEEEeEEEEccCcc
Confidence            48999875 7888765554   4678999999999999999975

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.49  E-value=0.78  Score=36.20  Aligned_cols=36  Identities=19%  Similarity=0.281  Sum_probs=30.6

Q ss_pred             hcCCCeEEEECC-ChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          130 LEKAKKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       130 ~~~~~~vvVvGg-G~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      +.++++|+|.|+ |.+|.-+...++.+|.+|+.+.+.
T Consensus        26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~   62 (174)
T d1yb5a2          26 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGT   62 (174)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCEEEEEeccccccccccccccccCccccccccc
Confidence            457899999995 999999999899999998777643

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=86.32  E-value=0.39  Score=37.54  Aligned_cols=38  Identities=21%  Similarity=0.281  Sum_probs=30.3

Q ss_pred             hcCCCeEEEECCChHHHHHHHHHHhCC-CcEEEEeeCCc
Q 014997          130 LEKAKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENH  167 (414)
Q Consensus       130 ~~~~~~vvVvGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~  167 (414)
                      .++.++|+|||+|.+|..+|..|...+ .++.+++..+.
T Consensus         4 ~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~   42 (154)
T d1pzga1           4 VQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKG   42 (154)
T ss_dssp             CSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccc
Confidence            356789999999999999998887766 47888876553

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=86.31  E-value=0.71  Score=39.27  Aligned_cols=52  Identities=19%  Similarity=0.248  Sum_probs=39.3

Q ss_pred             CCCeEEEECC-ChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEE
Q 014997          132 KAKKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF  192 (414)
Q Consensus       132 ~~~~vvVvGg-G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i  192 (414)
                      ++|.++|.|+ +-+|.++|..|++.|.+|.+..+..         +-.+.+.+.+++.|.++
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~---------~~l~~~~~~~~~~g~~~   56 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNR---------EALEKAEASVREKGVEA   56 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH---------HHHHHHHHHHHTTTSCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH---------HHHHHHHHHHHhcCCcE
Confidence            6788888886 4599999999999999999987643         33345556677776544

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=86.29  E-value=0.37  Score=38.15  Aligned_cols=36  Identities=28%  Similarity=0.243  Sum_probs=31.1

Q ss_pred             cCCCeEEEECCChHHHHHHHHHHhCCC-cEEEEeeCC
Q 014997          131 EKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPEN  166 (414)
Q Consensus       131 ~~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~~  166 (414)
                      .++++|+|+|+|-+|--++..|.+.|. +++++.|..
T Consensus        15 ~~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~   51 (167)
T d1npya1          15 NKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV   51 (167)
T ss_dssp             CTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence            367899999999999999999999995 788887653

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=86.26  E-value=0.36  Score=37.39  Aligned_cols=34  Identities=26%  Similarity=0.356  Sum_probs=27.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCC--CcEEEEeeCC
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPEN  166 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g--~~Vtlv~~~~  166 (414)
                      .|+|.|||+|.+|..+|..|..++  .++.+++..+
T Consensus         1 ~kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   36 (146)
T d1hyha1           1 ARKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (146)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            378999999999999999988776  3677776543

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=86.23  E-value=0.41  Score=42.50  Aligned_cols=35  Identities=20%  Similarity=0.212  Sum_probs=31.4

Q ss_pred             CCCeEEEECC-ChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          132 KAKKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       132 ~~~~vvVvGg-G~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      +.|+|+|+|+ |++|..++..|.+.|.+|+.+.|..
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~   37 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSL   37 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCc
Confidence            4688999995 9999999999999999999998864

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.00  E-value=1  Score=39.65  Aligned_cols=33  Identities=30%  Similarity=0.349  Sum_probs=29.0

Q ss_pred             CCeEEEEC-CChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          133 AKKVVVVG-GGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       133 ~~~vvVvG-gG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      .|+|+|.| +|++|.+++..|.+.|.+|+.+.+.
T Consensus         2 ~kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~   35 (346)
T d1ek6a_           2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNF   35 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECS
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            37899987 6999999999999999999998753

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=85.97  E-value=0.55  Score=36.37  Aligned_cols=28  Identities=11%  Similarity=0.080  Sum_probs=22.7

Q ss_pred             CHhHHHHcCCeEEcCCcEEEEeCCCCEE
Q 014997           52 TPEWYKEKGIEMIYQDPVTSIDIEKQTL   79 (414)
Q Consensus        52 ~~~~~~~~~i~~~~~~~V~~id~~~~~V   79 (414)
                      ..+.+.+.||+++.++++.+|+.+...+
T Consensus        88 ~~~~l~~~GV~i~~~~~v~~i~~~~v~l  115 (156)
T d1djqa2          88 MMRRLHELHVEELGDHFCSRIEPGRMEI  115 (156)
T ss_dssp             HHHHHHHTTCEEEETEEEEEEETTEEEE
T ss_pred             HHHHHhhccceEEeccEEEEecCcceEE
Confidence            4677888999999999999998765444

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=85.72  E-value=0.45  Score=35.72  Aligned_cols=37  Identities=14%  Similarity=0.155  Sum_probs=31.3

Q ss_pred             CCCeEEEECCCh-----------HHHHHHHHHHhCCCcEEEEeeCCcc
Q 014997          132 KAKKVVVVGGGY-----------IGMEVAAAAVGWKLDTTIIFPENHL  168 (414)
Q Consensus       132 ~~~~vvVvGgG~-----------~g~e~A~~l~~~g~~Vtlv~~~~~~  168 (414)
                      ..|+|+|+|+|+           .+..++..|++.|.++.++..++.-
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~T   53 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPAT   53 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTC
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHh
Confidence            458999999986           5788888999999999999877643

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=85.37  E-value=0.47  Score=38.70  Aligned_cols=34  Identities=24%  Similarity=0.178  Sum_probs=30.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      .+++|.|||-|.+|.++|..|..+|.+|..+.+.
T Consensus        42 ~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~   75 (197)
T d1j4aa1          42 RDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIF   75 (197)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             cCCeEEEecccccchhHHHhHhhhcccccccCcc
Confidence            4689999999999999999999999999887653

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.36  E-value=0.44  Score=36.92  Aligned_cols=35  Identities=23%  Similarity=0.397  Sum_probs=29.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCC--CcEEEEeeCC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPEN  166 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g--~~Vtlv~~~~  166 (414)
                      .+++|.|||+|.+|..+|..|...+  .++.+++..+
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~   41 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence            5679999999999999999998766  3688877544

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.32  E-value=0.52  Score=36.90  Aligned_cols=37  Identities=16%  Similarity=0.109  Sum_probs=32.0

Q ss_pred             hhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          129 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       129 ~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      .+.++++|+|.|+|.+|+-++..++..|.+|+++.+.
T Consensus        24 ~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~   60 (168)
T d1rjwa2          24 GAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIG   60 (168)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCC
Confidence            3568899999999999999999999999998877654

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=85.19  E-value=0.53  Score=36.14  Aligned_cols=34  Identities=21%  Similarity=0.341  Sum_probs=28.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCC--cEEEEeeCCc
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENH  167 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~--~Vtlv~~~~~  167 (414)
                      ++|.|||+|.+|..+|..|...+.  ++.+++..+.
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~   37 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKE   37 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC--
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCC
Confidence            579999999999999999988764  7888886654

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=84.85  E-value=0.96  Score=38.36  Aligned_cols=53  Identities=13%  Similarity=0.225  Sum_probs=40.1

Q ss_pred             CCCeEEEEC-CChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEE
Q 014997          132 KAKKVVVVG-GGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV  193 (414)
Q Consensus       132 ~~~~vvVvG-gG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~  193 (414)
                      ++|.++|.| ++-+|.++|..|++.|.+|.++.|.+         +-.+.+.+.+++.+.+++
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~---------~~l~~~~~~~~~~~~~~~   58 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNE---------KELDECLEIWREKGLNVE   58 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH---------HHHHHHHHHHHHTTCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH---------HHHHHHHHHHHhcCCCce
Confidence            689999998 45699999999999999999988753         222344556677776553

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=84.83  E-value=0.51  Score=38.52  Aligned_cols=35  Identities=23%  Similarity=0.216  Sum_probs=31.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      .+++|.|||-|.+|-++|..|..+|.+|..+.+..
T Consensus        44 ~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~   78 (199)
T d1dxya1          44 GQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYP   78 (199)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cceeeeeeecccccccccccccccceeeeccCCcc
Confidence            36899999999999999999999999999887643

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.53  E-value=1  Score=37.91  Aligned_cols=52  Identities=17%  Similarity=0.110  Sum_probs=37.7

Q ss_pred             CCCeEEEECCCh-HHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEE
Q 014997          132 KAKKVVVVGGGY-IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF  192 (414)
Q Consensus       132 ~~~~vvVvGgG~-~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i  192 (414)
                      .||.++|.|++. +|.++|..|++.|.+|.+..|..         +-.+.+.+.+++.|-++
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~---------~~l~~~~~~~~~~~~~~   58 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINK---------HGLEETAAKCKGLGAKV   58 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH---------HHHHHHHHHHHHTTCCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH---------HHHHHHHHHHHhcCCcE
Confidence            578888888655 99999999999999999987754         22334445566666443

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.40  E-value=0.49  Score=37.08  Aligned_cols=32  Identities=16%  Similarity=0.161  Sum_probs=29.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      ++|.+||-|..|..+|..|.+.|.+|+++.|.
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~   33 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLV   33 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSS
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECc
Confidence            57999999999999999999999999998764

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=84.32  E-value=0.46  Score=37.76  Aligned_cols=36  Identities=11%  Similarity=0.103  Sum_probs=31.7

Q ss_pred             cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          131 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       131 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      .++++|+|+|+|-++--++..|.+.+.+|+++.|..
T Consensus        16 ~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~   51 (171)
T d1p77a1          16 RPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF   51 (171)
T ss_dssp             CTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCCCEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence            367899999999999999999998889999998763

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=84.09  E-value=1  Score=36.40  Aligned_cols=85  Identities=18%  Similarity=0.166  Sum_probs=50.0

Q ss_pred             HhhcCCCeEEEECCChHHHHHHHHHHhCCC-cEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCC
Q 014997          128 SSLEKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD  206 (414)
Q Consensus       128 ~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~  206 (414)
                      ..++++++|+|+|+|.+|+-++..++.+|. +|.++...+.            + .+..++.|.....+..-..+..   
T Consensus        21 a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~------------r-l~~a~~~Ga~~~~~~~~~~~~~---   84 (195)
T d1kola2          21 AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPA------------R-LAHAKAQGFEIADLSLDTPLHE---   84 (195)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH------------H-HHHHHHTTCEEEETTSSSCHHH---
T ss_pred             hCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccch------------h-hHhhhhccccEEEeCCCcCHHH---
Confidence            346789999999999999988888888887 4555554321            1 1345666766554321111100   


Q ss_pred             CcEEEEEeCCCcEEecCEEEEccCCcC
Q 014997          207 GRVAAVKLEDGSTIDADTIVIGIGAKP  233 (414)
Q Consensus       207 ~~~~~v~~~~g~~i~~D~vi~a~G~~p  233 (414)
                       .+  ..+.+|.  .+|.++-++|...
T Consensus        85 -~i--~~~t~g~--g~D~vid~vG~~~  106 (195)
T d1kola2          85 -QI--AALLGEP--EVDCAVDAVGFEA  106 (195)
T ss_dssp             -HH--HHHHSSS--CEEEEEECCCTTC
T ss_pred             -HH--HHHhCCC--CcEEEEECccccc
Confidence             00  0112221  3588899988653

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=83.71  E-value=0.6  Score=41.27  Aligned_cols=36  Identities=17%  Similarity=0.247  Sum_probs=31.1

Q ss_pred             hcCCCeEEEEC-CChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          130 LEKAKKVVVVG-GGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       130 ~~~~~~vvVvG-gG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      +.++|+|+|.| +|++|..++..|.+.|.+|..+.|.
T Consensus         8 ~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~   44 (342)
T d1y1pa1           8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARS   44 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCC
Confidence            35689999998 6999999999999999999876654

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=83.69  E-value=0.68  Score=37.57  Aligned_cols=34  Identities=21%  Similarity=0.356  Sum_probs=31.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  165 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~  165 (414)
                      .++++.|||-|.+|-++|..|..+|.+|....+.
T Consensus        48 ~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~   81 (193)
T d1mx3a1          48 RGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPY   81 (193)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTT
T ss_pred             eCceEEEeccccccccceeeeeccccceeeccCc
Confidence            5789999999999999999999999999887654

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=83.47  E-value=0.71  Score=34.48  Aligned_cols=47  Identities=17%  Similarity=0.304  Sum_probs=33.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG  195 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~  195 (414)
                      |+++|+|.|..|.+++..|.  +.+|.+++..+..         .    +.+++.|+.++.+
T Consensus         1 kHivI~G~g~~g~~l~~~L~--~~~i~vi~~d~~~---------~----~~~~~~~~~~i~G   47 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELR--GSEVFVLAEDENV---------R----KKVLRSGANFVHG   47 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSC--GGGEEEEESCTTH---------H----HHHHHTTCEEEES
T ss_pred             CEEEEECCCHHHHHHHHHHc--CCCCEEEEcchHH---------H----HHHHhcCcccccc
Confidence            67999999999999999985  4567777654421         1    2345678877654

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=83.27  E-value=0.58  Score=35.90  Aligned_cols=33  Identities=24%  Similarity=0.429  Sum_probs=26.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCC-cEEEEeeCC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPEN  166 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~~  166 (414)
                      ++|.|||+|.+|..+|..|...+. ++.+++..+
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~   35 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeecc
Confidence            689999999999999999887764 677776544

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=83.25  E-value=1.4  Score=37.19  Aligned_cols=53  Identities=13%  Similarity=0.154  Sum_probs=38.6

Q ss_pred             CCCeEEEECCC-hHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEE
Q 014997          132 KAKKVVVVGGG-YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV  193 (414)
Q Consensus       132 ~~~~vvVvGgG-~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~  193 (414)
                      ++|.++|.|++ -+|..+|..|++.|.+|.+..|..         +-.+.+.+.+++.|.+++
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~---------~~l~~~~~~~~~~g~~~~   60 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQ---------KELNDCLTQWRSKGFKVE   60 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH---------HHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH---------HHHHHHHHHHHhcCCCce
Confidence            67888888865 599999999999999999987643         223344455666665543

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=83.04  E-value=0.8  Score=35.12  Aligned_cols=34  Identities=24%  Similarity=0.330  Sum_probs=27.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCC--cEEEEeeCC
Q 014997          133 AKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPEN  166 (414)
Q Consensus       133 ~~~vvVvGgG~~g~e~A~~l~~~g~--~Vtlv~~~~  166 (414)
                      +.+|.|||+|.+|..+|..|...+.  ++.+++..+
T Consensus         1 p~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           1 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            3689999999999999999988764  677776543

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=83.01  E-value=0.64  Score=36.91  Aligned_cols=33  Identities=6%  Similarity=0.064  Sum_probs=30.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      .+|-+||-|..|..+|..|.+.|.+|+++.|.+
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~   35 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            578999999999999999999999999998765

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=82.82  E-value=1.2  Score=37.60  Aligned_cols=53  Identities=13%  Similarity=0.098  Sum_probs=38.6

Q ss_pred             CCCeEEEECC-ChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEE
Q 014997          132 KAKKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF  192 (414)
Q Consensus       132 ~~~~vvVvGg-G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i  192 (414)
                      .||.++|.|+ +-+|.++|..|++.|.+|.+..+.+        .+..+.+.+.+++.|.++
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~--------~~~~~~~~~~~~~~g~~~   58 (259)
T d1ja9a_           5 AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSS--------SKAAEEVVAELKKLGAQG   58 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC--------HHHHHHHHHHHHHTTCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCC--------hHHHHHHHHHHHHcCCCc
Confidence            5788888875 4599999999999999998866543        233445566677776544

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=82.78  E-value=1.2  Score=37.59  Aligned_cols=50  Identities=26%  Similarity=0.185  Sum_probs=34.9

Q ss_pred             CeEE-EECC-ChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEE
Q 014997          134 KKVV-VVGG-GYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF  192 (414)
Q Consensus       134 ~~vv-VvGg-G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i  192 (414)
                      |+|+ |.|+ +-+|.++|..|++.|.+|.+..|.+         +-.+.+.+.+++.|.++
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~---------~~l~~~~~~i~~~g~~~   52 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYND---------ATAKAVASEINQAGGHA   52 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH---------HHHHHHHHHHHHTTCCE
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCH---------HHHHHHHHHHHhcCCcE
Confidence            5664 4464 4599999999999999999987643         23344556667766543

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=82.72  E-value=0.56  Score=37.34  Aligned_cols=34  Identities=24%  Similarity=0.178  Sum_probs=29.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      ++++|+|+|+|-++--++..|.+.| +|+++.|..
T Consensus        17 ~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~   50 (177)
T d1nvta1          17 KDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTV   50 (177)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhh
Confidence            7899999999999998888887776 888887753

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=82.60  E-value=0.84  Score=38.73  Aligned_cols=36  Identities=22%  Similarity=0.412  Sum_probs=30.8

Q ss_pred             CCCeEEEECCC-hHHHHHHHHHHhCCCcEEEEeeCCc
Q 014997          132 KAKKVVVVGGG-YIGMEVAAAAVGWKLDTTIIFPENH  167 (414)
Q Consensus       132 ~~~~vvVvGgG-~~g~e~A~~l~~~g~~Vtlv~~~~~  167 (414)
                      ++|.++|.|++ -+|..+|..|++.|.+|.+..+...
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   44 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAA   44 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            57888888865 4999999999999999999988763

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=82.49  E-value=0.73  Score=36.13  Aligned_cols=31  Identities=19%  Similarity=0.186  Sum_probs=25.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCc--EEEEee
Q 014997          134 KKVVVVGGGYIGMEVAAAAVGWKLD--TTIIFP  164 (414)
Q Consensus       134 ~~vvVvGgG~~g~e~A~~l~~~g~~--Vtlv~~  164 (414)
                      |+|.|||.|.+|.-+|..|++.|..  |+.+++
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~   34 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDI   34 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEEC
Confidence            5799999999999999999998864  444443

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=82.47  E-value=0.62  Score=36.00  Aligned_cols=32  Identities=13%  Similarity=0.170  Sum_probs=28.4

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      +|.|||.|..|.-+|..|++.|.+|++..+.+
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~   33 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGR   33 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTC
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCch
Confidence            58899999999999999999999998876544

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=82.25  E-value=2.6  Score=33.31  Aligned_cols=36  Identities=19%  Similarity=0.278  Sum_probs=31.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCC-cEEEEeeCCc
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENH  167 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~  167 (414)
                      ++++|+|+|+|-+|--++..|.+.|. +++++.|.+.
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~   53 (182)
T d1vi2a1          17 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE   53 (182)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSST
T ss_pred             CCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchH
Confidence            57899999999999999999999886 5788887654

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.19  E-value=0.75  Score=38.21  Aligned_cols=49  Identities=18%  Similarity=0.201  Sum_probs=33.4

Q ss_pred             hHHHHcCCeEEcCCcEEEEeCCC----C--EEEeCCCc--EEecCeEEEccCCCCCCC
Q 014997           54 EWYKEKGIEMIYQDPVTSIDIEK----Q--TLITNSGK--LLKYGSLIVATGCTASRF  103 (414)
Q Consensus        54 ~~~~~~~i~~~~~~~V~~id~~~----~--~V~~~~g~--~~~yd~LviAtG~~~~~~  103 (414)
                      ..++..+|+++.+ +...++...    +  .+...+|+  ++++|.+|+|||++|+.+
T Consensus       102 ~~~~~~gV~vi~G-~~~~~~~~~~~~~~~v~v~~~dg~~~~i~ad~viiAtG~~p~~~  158 (233)
T d1xdia1         102 AQLLSMGVQVIAG-RGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRIL  158 (233)
T ss_dssp             HHHHHTTCEEEES-EEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECCC
T ss_pred             hhhcccceeEEEC-cccccccccccccceEEEEecCCceeeeecceeeeecCcccccc
Confidence            4466789999886 444444322    2  34445664  689999999999988643

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.03  E-value=0.82  Score=37.37  Aligned_cols=45  Identities=11%  Similarity=0.104  Sum_probs=33.3

Q ss_pred             HhHHHHcCCeEEcCCcEEEEeC--CCCEE--EeCCCcEEecCeEEEccCC
Q 014997           53 PEWYKEKGIEMIYQDPVTSIDI--EKQTL--ITNSGKLLKYGSLIVATGC   98 (414)
Q Consensus        53 ~~~~~~~~i~~~~~~~V~~id~--~~~~V--~~~~g~~~~yd~LviAtG~   98 (414)
                      .+.+++.|++++++++|++|..  ++..+  .+.+|+++.+|+|| ++.+
T Consensus       243 ~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI-~~~s  291 (297)
T d2bcgg1         243 ARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVI-ADPT  291 (297)
T ss_dssp             HHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEETTEEEECSCEE-ECGG
T ss_pred             HHHHHhcCCEEEeCCEeeEEEEECCCCEEEEEEcCCEEEECCEEE-EChh
Confidence            4556788999999999999854  44433  45788899999976 4443

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=81.94  E-value=0.94  Score=36.99  Aligned_cols=46  Identities=20%  Similarity=0.403  Sum_probs=32.0

Q ss_pred             HHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCC
Q 014997           55 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP  104 (414)
Q Consensus        55 ~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~  104 (414)
                      ...+.+++++.+ +..-++.  ..+.. ++..+.+|++|||||++|..+|
T Consensus       105 ~~~~~~v~~i~G-~~~~~~~--~~~~~-~~~~i~a~~viiAtG~~p~~lp  150 (220)
T d1lvla1         105 LLKKHGVKVVHG-WAKVLDG--KQVEV-DGQRIQCEHLLLATGSSSVELP  150 (220)
T ss_dssp             HHHHTTCEEECS-CEEEEET--TEEEE-TTEEEECSEEEECCCEEECCBT
T ss_pred             hhccCceEEEEe-eecccCc--ccccc-cceeEeeceeeEcCCCCccccc
Confidence            345678888887 4444443  33333 4667999999999999987655

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=81.90  E-value=0.67  Score=36.19  Aligned_cols=32  Identities=16%  Similarity=0.145  Sum_probs=28.8

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  166 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~  166 (414)
                      +|-|||-|..|..+|..|.+.|.+|+++.+.+
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~   33 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   33 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            58899999999999999999999999887643

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=81.87  E-value=0.85  Score=36.21  Aligned_cols=37  Identities=19%  Similarity=0.139  Sum_probs=32.2

Q ss_pred             hcCCCeEEEECCChHHHHHHHHHHhCC-CcEEEEeeCC
Q 014997          130 LEKAKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPEN  166 (414)
Q Consensus       130 ~~~~~~vvVvGgG~~g~e~A~~l~~~g-~~Vtlv~~~~  166 (414)
                      +++++.|+|+|.|.+|+-.+..++.+| .+|..++..+
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~   64 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNK   64 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcH
Confidence            567899999999999999999999999 4688887655

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=81.66  E-value=0.85  Score=36.05  Aligned_cols=34  Identities=24%  Similarity=0.253  Sum_probs=29.3

Q ss_pred             hcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEe
Q 014997          130 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF  163 (414)
Q Consensus       130 ~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~  163 (414)
                      .+++++|+|+|+|.+|+-++..++.+|.++.++.
T Consensus        26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~   59 (174)
T d1f8fa2          26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAV   59 (174)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CCCCCEEEEeCCCHHHhhhhhcccccccceeeee
Confidence            5678999999999999999999998898766554

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=81.45  E-value=0.61  Score=39.28  Aligned_cols=34  Identities=21%  Similarity=0.289  Sum_probs=29.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCC-cEEEEeeC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPE  165 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~  165 (414)
                      +.++|+|+|.|-+|.++|..|++.|. ++++++..
T Consensus        29 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          29 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            35799999999999999999999996 57777644

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=81.23  E-value=2  Score=36.36  Aligned_cols=54  Identities=17%  Similarity=0.167  Sum_probs=40.4

Q ss_pred             CCCeEEEEC-CChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEE
Q 014997          132 KAKKVVVVG-GGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV  193 (414)
Q Consensus       132 ~~~~vvVvG-gG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~  193 (414)
                      ++|.++|.| ++-+|.++|..|++.|.+|.+..|..        ++..+.+.+.+++.|.+++
T Consensus         6 ~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~--------~~~~~~~~~~~~~~g~~~~   60 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSK--------EDEANSVLEEIKKVGGEAI   60 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC--------HHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc--------HHHHHHHHHHHHhcCCcEE
Confidence            577777777 46699999999999999999888754        2334455666777776654

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=81.08  E-value=0.6  Score=37.76  Aligned_cols=32  Identities=25%  Similarity=0.440  Sum_probs=27.3

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc
Q 014997          135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  167 (414)
Q Consensus       135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  167 (414)
                      +|.|||.|++|+-+|..++ .|.+|+.++-.+.
T Consensus         2 kI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~   33 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPS   33 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHT-TTSEEEEECSCHH
T ss_pred             EEEEECCChhHHHHHHHHH-CCCcEEEEECCHH
Confidence            5899999999999998776 6999999886643

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=81.00  E-value=1  Score=35.19  Aligned_cols=34  Identities=29%  Similarity=0.441  Sum_probs=28.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCC--cEEEEeeC
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPE  165 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~--~Vtlv~~~  165 (414)
                      +.++|.|||.|.+|..+|..|...+.  ++.+++..
T Consensus        19 ~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~   54 (160)
T d1i0za1          19 PNNKITVVGVGQVGMACAISILGKSLADELALVDVL   54 (160)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            45799999999999999999998875  67777654

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=80.91  E-value=1  Score=36.77  Aligned_cols=33  Identities=21%  Similarity=0.156  Sum_probs=30.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEee
Q 014997          132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP  164 (414)
Q Consensus       132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~  164 (414)
                      ++++|+|-|-|.+|..+|..|.+.|.+|++.+.
T Consensus        26 ~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~   58 (201)
T d1c1da1          26 DGLTVLVQGLGAVGGSLASLAAEAGAQLLVADT   58 (201)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEecc
Confidence            679999999999999999999999999987653

>d1mo9a3 d.87.1.1 (A:384-523) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=80.35  E-value=1.4  Score=33.43  Aligned_cols=52  Identities=17%  Similarity=0.082  Sum_probs=38.9

Q ss_pred             EEEEEEe--CCEEEEEEeecCChHHhhHHHH-HHhCCCCCCh-hh---hcCCCcHHHHH
Q 014997          350 IATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVDK-AK---LQQASSVEEAL  401 (414)
Q Consensus       350 ~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~-l~~~~~~~~~-~~---~~~~~~~~~~~  401 (414)
                      +.++.++  +++|+|+.+++.++.++...-. +|+.+.+++. ..   ...||+..|.+
T Consensus        69 ~vKlv~d~~t~~IlGa~ivG~~A~ElI~~~~~ai~~~~t~~dl~~~~~i~~hPT~~~~l  127 (140)
T d1mo9a3          69 FQKIVIDAKTRKVLGAHHVGYGAKDAFQYLNVLIKQGLTVDELGDMDELFLNPTHFIQL  127 (140)
T ss_dssp             EEEEEEETTTCBEEEEEEEESSCHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSCCHHHH
T ss_pred             eEEEEEecCCCcEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHHhcCCCCCCCChHHHH
Confidence            6676664  6999999998888888766554 5688888887 33   35778887765