Citrus Sinensis ID: 015006

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410----
Protein Sequence
MGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPGEISEVGIENQGEDQAAGKNENDDSEQESDGDEAQEFHEAAAEAPRKGCSTAFGLPVEDYFLLLDLIDVPYYDIKYQR
Secondary Structure (PSIPRED)
ccccccccccEEEEEEEcccccccccccccccccEEEEEEEEEEEHHHEEEcccccEEEEEEccccccccccccccccEEEEEEEEEEEcccccEEEccccccccccEEEEEcccccHHHHHHHHHccccccEEEEEEccccccccccccccccccccEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccHHHHHccccccccEEcccc
Secondary Structure Prediction (SSPRO)
cccHccccccEEEEEEccHHccccccccccccccEEEEEEEEEEcccccEccccccEEEEEEEcccccccccccccccEEEEEEEEEEEcccEEEEEcccccccccEEEEEEcccccHHHHHHHHHHHccccEEEEEEccHHcccccccccccccccEEEEEEEEEEcccccccccccHHHHHHHHHHHHHHccHHHHccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHccHcHccccccHHHccccHHHHHHHHHHccccccEcEccc
Coil and Loop (DISEMBL)
MGIGTMTREEKAVIYVTsqyltpsplmpvvegceEVHFEVELVHLIQVRDMLGDGRLIKRRIrdgkgefpmdcplhdsllcvhykgmllneeKKVFYdtrvdndgqplefssgeglvpeGFEMCVRLMLpgeialvtcppdyaydkflrpanvpegaHIQWEIELlgfekpkdwtglsfdgIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDfnhvnpqddeegkvfvgkrNLLHLNVAACLLKLGECRKSIEACNKVLdanpahvkgLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKglfdkkpgeisevgienqgedqaagknenddseqesdgdEAQEFHEAAaeaprkgcstafglpveDYFLLLDlidvpyydikyqr
Flexible Loop (DISEMBL)
mgigtmtreeKAVIYVTsqyltpspLMPVVEGCEEVHFEVELVHLIqvrdmlgdgrLIKRRIRdgkgefpmdcPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTgnrlfkegkFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKvldanpahvkGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKArkqfkglfdkkpgeisevgienqgedqaagknENDDSEQESDGDEAQEFHEAAAEAPRKGCSTAFGLPVEDYFLLLDLIDVPYYDIKYQR
Low Complexity Region (SEG)
MGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCeevhfevelvhlIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPGEISEVGIENQGEDQAAGKNENDDSEQESDGDeaqefheaaaeaPRKGCSTAFGLPVEDYFLLLDLIDVPYYDIKYQR
Disordered region (IsUnstruct)
**********KAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFE**************************************************************************************************CSTAFGLPVEDYFLLLDLIDVPYYDIKY**
Disordered Region (DISOPRED)
MGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK***********Q******************************************************************EDYFLLLDLIDVPYYDIKYQ*
Disordered Region (DISEMBL)
MGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK***************************RKQFKGLFDKKPGEISEVGIENQG**********************************KGCSTAFGLPVEDYFLLLDLIDVPYYDIKYQR
Disordered Region (DISPRO)
MGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPGEISEV******************************************CSTAFGLPVEDYFLLLDLIDVPYYDIKYQR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPGEISEVGIENQGEDQAAGKNENDDSEQESDGDEAQEFHEAAAEAPRKGCSTAFGLPVEDYFLLLDLIDVPYYDIKYQR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	414	2.2.26 [Sep-21-2011]
Q7DMA9	635	Peptidyl-prolyl cis-trans	no	no	0.932	0.607	0.734	1e-166
Q38931	551	Peptidyl-prolyl cis-trans	no	no	0.789	0.593	0.280	2e-29
Q9FJL3	578	Peptidyl-prolyl cis-trans	no	no	0.792	0.567	0.276	1e-27
Q43207	559	70 kDa peptidyl-prolyl is	N/A	no	0.705	0.522	0.300	3e-27
Q02790	459	Peptidyl-prolyl cis-trans	yes	no	0.777	0.701	0.268	5e-25
Q9TRY0	459	Peptidyl-prolyl cis-trans	yes	no	0.857	0.773	0.277	8e-25
P0C1J7	385	FK506-binding protein 5 O	N/A	no	0.531	0.571	0.334	3e-23
P30416	458	Peptidyl-prolyl cis-trans	yes	no	0.683	0.617	0.278	4e-23
Q9QVC8	458	Peptidyl-prolyl cis-trans	yes	no	0.770	0.696	0.266	9e-23
Q95L05	457	Peptidyl-prolyl cis-trans	N/A	no	0.770	0.698	0.268	1e-22

>sp|Q7DMA9|PAS1_ARATH Peptidyl-prolyl cis-trans isomerase PASTICCINO1 OS=Arabidopsis thaliana GN=PAS1 PE=1 SV=2

 Score =  586 bits (1510), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 288/392 (73%), Positives = 326/392 (83%), Gaps = 6/392 (1%)

Query: 1   MGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKR 60
           +GIGTM R+EKAVIYV  QYLT SPL+ + +  EEVHFEVELVH IQVRDMLGDGRLIKR
Sbjct: 215 IGIGTMARKEKAVIYVRKQYLTESPLLHIDQDLEEVHFEVELVHFIQVRDMLGDGRLIKR 274

Query: 61  RIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEG 120
           RIRDG+GEFPMDCPL DS L VHYKGMLLNEEK VFYD+++DN+ QPLEFSSGEGLVPEG
Sbjct: 275 RIRDGRGEFPMDCPLQDSRLSVHYKGMLLNEEKTVFYDSKIDNNDQPLEFSSGEGLVPEG 334

Query: 121 FEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFD 180
           FEMC RLMLPGEIALVTCPPDYAYDKF RP  V EGAH+QWEIELLGFE P+DWTGL+F 
Sbjct: 335 FEMCTRLMLPGEIALVTCPPDYAYDKFPRPPGVSEGAHVQWEIELLGFETPRDWTGLNFQ 394

Query: 181 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLN 240
            IMDEA+KIR TGNRLFKEGKFELAKAKYEKVLR+FNHVNPQD++EGK+F   RN+LHLN
Sbjct: 395 SIMDEADKIRSTGNRLFKEGKFELAKAKYEKVLREFNHVNPQDEDEGKIFGDTRNMLHLN 454

Query: 241 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 300
           VAACLLK+GE RKSIE CNKVL+A P HVKGLYRRGMAY+A GE+++A+ DF MM+KVDK
Sbjct: 455 VAACLLKMGEWRKSIETCNKVLEAKPGHVKGLYRRGMAYIAGGEYDDARNDFNMMIKVDK 514

Query: 301 SSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPGEISEVGIENQGEDQAAGKNENDD 360
           SSE DATAAL KLK++ QE ESKARKQFKGLFDK+PGEI+EVG E + E +     E  D
Sbjct: 515 SSEADATAALLKLKQKEQEAESKARKQFKGLFDKRPGEITEVGSEIREESKTI---EEVD 571

Query: 361 SEQESDGDEAQEFHEA---AAEAPRKGCSTAF 389
             +++D DE  E   A   + E  RK    A+
Sbjct: 572 ETKDNDDDETLEEEGATTVSTERKRKWSEKAW 603

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). Essential protein regulating cell division, adhesion and elongation throughout the plant development and embryogenesis. Required for the spatial organization of apical meristems. Involved in the hormonal control of cell division and differentiation mediated by cytokinins and auxin. Regulates the function of NAC089 transcription factor by controlling its targeting to the nucleus upon plant cell division. Interacts with enzymes of the fatty acid elongase complex and favors the generation of very-long-chain fatty acids (VLCFAs) required for polar auxin transport and tissue patterning during plant development.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|Q38931|FKB62_ARATH Peptidyl-prolyl cis-trans isomerase FKBP62 OS=Arabidopsis thaliana GN=FKBP62 PE=1 SV=2

 Score =  130 bits (327), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 171/342 (50%), Gaps = 15/342 (4%)

Query: 2   GIGTMTREEKAVIYVTSQYLTPSPLMPVVEG------CEEVHFEVELVHLIQVRDMLGDG 55
            + TM + EK ++ V  QY       P   G         +   +ELV    V ++  D 
Sbjct: 212 AVKTMKKGEKVLLTVKPQYGFGEKGKPASAGEGAVPPNATLEINLELVSWKTVSEVTDDN 271

Query: 56  RLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEG 115
           +++K+ +++G G    + P   +++ V   G L  ++  VF       + +P EF + E 
Sbjct: 272 KVVKKVLKEGDG---YERPNEGAVVKVKLIGKL--QDGTVFLKKGHGENEEPFEFKTDEE 326

Query: 116 LVPEGFEMCVRLMLPGEIALVTCPPDYAY---DKFLRPANVPEGAHIQWEIELLGFEKPK 172
            V +G +  V  M  GE+ALVT  P+YA+   +     A VP  + + +E++LL F+K +
Sbjct: 327 QVVDGLDRAVMKMKKGEVALVTIDPEYAFGSNESQQELAVVPPNSTVTYEVDLLTFDKER 386

Query: 173 DWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVG 232
           +   ++ +  ++ A K +  GN  FK GK+ LA  +YEK ++   +     +EE K    
Sbjct: 387 ESWDMNTEEKIEAASKKKEEGNSKFKGGKYSLASKRYEKAVKFIEYDTSFSEEEKKQAKA 446

Query: 233 KRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDF 292
            +   +LN AAC LKL + +++ + C KVL+    +VK LYRR  AYM L + + A+ D 
Sbjct: 447 LKVACNLNDAACKLKLKDYKQAEKLCTKVLELESTNVKALYRRAQAYMELSDLDLAEFDV 506

Query: 293 EMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDK 334
           +  +++D ++  +      +LK++ +E   K  K +  +F K
Sbjct: 507 KKALEIDPNNR-EVKLEQKRLKEKMKEFNKKEAKFYGNMFAK 547

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). Co-chaperone that positively modulates thermotolerance by interacting with HSP90.1 and increasing the HSFA2-mediated accumulation of chaperones of the small-HSPs family.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9FJL3|FKB65_ARATH Peptidyl-prolyl cis-trans isomerase FKBP65 OS=Arabidopsis thaliana GN=FKBP65 PE=1 SV=1

 Score =  124 bits (311), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 172/343 (50%), Gaps = 15/343 (4%)

Query: 2   GIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCE-------EVHFEVELVHLIQVRDMLGD 54
            + TM R EK ++ V  QY       P  +G +        +  ++ELV    V ++  D
Sbjct: 220 AVKTMKRGEKVLLTVKPQYGFGEFGRPASDGLQAAIPPNATLQIDLELVSWKTVVEVTDD 279

Query: 55  GRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGE 114
            ++IK+ +++G+G    + P   +++ +   G L  +   VF     + D +P EF   E
Sbjct: 280 RKVIKKILKEGEG---YERPNEGAIVKLKLIGKL-QDGTTVFVKKGHEEDEEPFEFKIDE 335

Query: 115 GLVPEGFEMCVRLMLPGEIALVTCPPDYAY---DKFLRPANVPEGAHIQWEIELLGFEKP 171
             V EG E  V  M  GE+AL+T  P+YA+   +     A +P  + + +E+EL+ F K 
Sbjct: 336 EQVIEGLEKAVMGMKKGEVALITISPEYAFGSSESKQELAVIPPNSTVYYEVELVSFIKE 395

Query: 172 KDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFV 231
           K+   ++    ++ A K +  GN LFK GK+  A  +YE+ ++   + +  D+EE K   
Sbjct: 396 KESWDMNTQERIEAAGKKKEEGNVLFKAGKYARASKRYERGVKYIEYDSTFDEEEKKKSK 455

Query: 232 GKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRD 291
             +   +LN AAC LKL + +++ +   KVL+ +  +VK +YRR  AY+   + + A+ D
Sbjct: 456 DLKIACNLNDAACKLKLKDYKEAAKLSTKVLEMDSRNVKAMYRRAHAYLETADLDLAELD 515

Query: 292 FEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDK 334
            +  +++D  ++ +      KLK++ +E   K  K +  +  K
Sbjct: 516 IKKALEIDPDNK-EVKIEYKKLKEKVKEYNKKDAKFYSNMLSK 557

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Co-chaperone that negatively modulates thermotolerance by interacting with FKBP62 and decreasing the HSFA2-mediated accumulation of chaperones of the small-HSPs family. Plays a positive role in tolerance to intracellular acid stress by maintaining the pH homeostasis.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q43207|FKB70_WHEAT 70 kDa peptidyl-prolyl isomerase OS=Triticum aestivum GN=FKBP70 PE=1 SV=1

 Score =  123 bits (308), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 155/306 (50%), Gaps = 14/306 (4%)

Query: 2   GIGTMTREEKAVIYVTSQYLTPSPLMPV------VEGCEEVHFEVELVHLIQVRDMLGDG 55
            + TM + EK ++ V  QY       P       V     +  ++ELV    V ++  D 
Sbjct: 215 AVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDK 274

Query: 56  RLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEG 115
           +++K+ +++ +G    + P   +++ V   G L  ++  VF     D + +P EF + E 
Sbjct: 275 KILKKVLKEXEG---YERPNEGAVVTVKITGKL--QDGTVFLKKGHD-EQEPFEFKTDEE 328

Query: 116 LVPEGFEMCVRLMLPGEIALVTCPPDYAY--DKFLRPANVPEGAHIQWEIELLGFEKPKD 173
            V EG +  V  M  GE+ALVT PP+YAY   +  + A VP  + + +E+EL+ F K K+
Sbjct: 329 AVIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFVKDKE 388

Query: 174 WTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGK 233
              L+    ++ A   +  GN LFK GK+  A  +YEK  +   +     ++E K     
Sbjct: 389 SWDLNNSEKIEAAGTKKEEGNALFKSGKYARASKRYEKAAKFIEYDTSFSEDEKKQSKQL 448

Query: 234 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
           +   +LN AAC LKL + +++ + C KVL+ +  +VK LYRR  AY  L + E A+ D +
Sbjct: 449 KITCNLNNAACKLKLKDYKQAEKLCTKVLELDSRNVKALYRRAQAYTQLADLELAEVDIK 508

Query: 294 MMMKVD 299
             +++D
Sbjct: 509 KALEID 514

PPIases accelerate the folding of proteins during protein synthesis.

Triticum aestivum (taxid: 4565)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q02790|FKBP4_HUMAN Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Homo sapiens GN=FKBP4 PE=1 SV=3

 Score =  115 bits (289), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 174/347 (50%), Gaps = 25/347 (7%)

Query: 38  FEVELVHLIQVRDMLG--DGRLIKRRIRDGKG-EFPMDCPLHDSLLCVHYKGMLLNEEKK 94
           FEVEL    +  D+    DG +I+R    G+G   P +  + +  L  +YK  L ++ + 
Sbjct: 130 FEVELFEF-KGEDLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQREL 188

Query: 95  VFYDTRVDNDGQPLEFSSGEGL-VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-N 152
            F            E   GE L +P G E  ++ M  GE ++V   P YA+    +    
Sbjct: 189 RF------------EIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQ 236

Query: 153 VPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKV 212
           +P  A +++E+ L  FEK K+   ++ +  ++++  ++  G   FKEGK++ A  +Y+K+
Sbjct: 237 IPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKI 296

Query: 213 LRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGL 272
           +    + +   +EE +     R   HLN+A C LKL     +IE+CNK L+ +  + KGL
Sbjct: 297 VSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGL 356

Query: 273 YRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVE---SKARKQFK 329
           +RRG A++A+ +FE A+ DF+ ++++     P+  AA ++L   +Q +    ++ +K + 
Sbjct: 357 FRRGEAHLAVNDFELARADFQKVLQL----YPNNKAAKTQLAVCQQRIRRQLAREKKLYA 412

Query: 330 GLFDKKPGEISEVGIENQGEDQAAGKNENDDSEQESDGDEAQEFHEA 376
            +F++   E ++   E    D        ++ +  + G ++Q   EA
Sbjct: 413 NMFERLAEEENKAKAEASSGDHPTDTEMKEEQKSNTAGSQSQVETEA 459

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening. Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9TRY0|FKBP4_BOVIN Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Bos taurus GN=FKBP4 PE=1 SV=4

 Score =  115 bits (287), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 108/389 (27%), Positives = 190/389 (48%), Gaps = 34/389 (8%)

Query: 1   MGIGTMTREEKAVIYVTSQY---LTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLG--DG 55
           + + TM   E   I    +Y   L  SP  P +     + FEVEL    +  D+    DG
Sbjct: 92  IAVATMKVGEVCHITCKPEYAYGLAGSP--PKIPPNATLVFEVELFEF-KGEDLTEEEDG 148

Query: 56  RLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEG 115
            +I+R    G+G      P   +L+ V  +G   ++   VF       D + L F  GEG
Sbjct: 149 GIIRRIRTRGEG---YAKPNEGALVEVALEGYFKDQ---VF-------DRRELRFEVGEG 195

Query: 116 L---VPEGFEMCVRLMLPGEIALVTCPPDYAY-----DKFLRPANVPEGAHIQWEIELLG 167
               +P G E  ++ M  GE ++V   P YA+     +KF     +P  A +++EI L  
Sbjct: 196 ESMDLPCGLEKAIQRMEKGEHSIVYLKPRYAFGSAGKEKF----QIPPNAELKYEIHLKS 251

Query: 168 FEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG 227
           FEK K+   +S +  ++++  ++  G   FKEGK++ A  +Y+K++    + +   DE+ 
Sbjct: 252 FEKAKESWEMSSEEKLEQSTIVKERGTVYFKEGKYKQAVLQYKKIVSWLEYESSFSDEDA 311

Query: 228 KVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEE 287
           +     R   HLN+A C LKL     +IE CNK L+ +  + KGL+RRG A++A+ +F+ 
Sbjct: 312 EKAQALRLASHLNLAMCHLKLQAFSAAIENCNKALELDSNNEKGLFRRGEAHLAVNDFDL 371

Query: 288 AQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPGEISEVGIENQ 347
           A+ DF+ ++++  S++      +   ++ R+++E K +K +  +F++   E ++      
Sbjct: 372 ARADFQKVLQLYPSNKAAKAQLVVCQQRIRKQLE-KEKKLYANMFERLAEEETKAKATVA 430

Query: 348 GEDQAAGKNENDDSEQESDGDEAQEFHEA 376
             DQ A     D+ + +  G + Q   EA
Sbjct: 431 AGDQPADAEMRDEPKNDVAGGQPQVEAEA 459

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90) (By similarity). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Bos taurus (taxid: 9913)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P0C1J7|FKBP5_RHIO9 FK506-binding protein 5 OS=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) GN=FKBP5 PE=3 SV=1

 Score =  110 bits (274), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/239 (33%), Positives = 118/239 (49%), Gaps = 19/239 (7%)

Query: 54  DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 113
           DG + KR I+ G G+ P       + + VHY   LL+  +K  +D+  D + +   F   
Sbjct: 7   DGGVTKRIIKAGLGQRPEPT----NFVSVHYDAYLLDTSEK--FDSSRDRNTE-FTFQLR 59

Query: 114 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF-EKPK 172
           +  V E +E+ +  M  GE+A + C  DY Y    R   VP  A +++E+EL+GF EKPK
Sbjct: 60  DSKVIEAWELAIPTMQVGELAEIICTSDYGYGDQGRQYIVPPRAQLRFEVELIGFWEKPK 119

Query: 173 DWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEK---VLRDFNHVNPQDDEEGKV 229
                S    +  AEK +  GN LFK    E A   Y K    ++D     P++ EE + 
Sbjct: 120 -----SASERIRLAEKKKNEGNALFKLDAIESALFAYRKGREYIQDLWDCEPEELEEARQ 174

Query: 230 FVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEA 288
            +     + LN+ AC LKL     +IE C K LD +   +K  YR G AYM  G++E +
Sbjct: 175 LIVS---IQLNIGACHLKLKHYDHAIEVCQKALDRDMTKIKAYYRIGQAYMEKGDYESS 230

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) (taxid: 246409)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P30416|FKBP4_MOUSE Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Mus musculus GN=Fkbp4 PE=1 SV=5

 Score =  109 bits (272), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 157/302 (51%), Gaps = 19/302 (6%)

Query: 38  FEVELVHLIQVRDMLG--DGRLIKRRIRDGKG-EFPMDCPLHDSLLCVHYKGMLLNEEKK 94
           FEVEL    +  D+    DG +I+R    G+G   P D  + +  L  ++K  L ++ + 
Sbjct: 130 FEVELFEF-KGEDLTEEEDGGIIRRIRTRGEGYARPNDGAMVEVALEGYHKDRLFDQREL 188

Query: 95  VFYDTRVDNDGQPLEFSSGEGL-VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-N 152
            F            E   GE L +P G E  ++ M  GE ++V   P YA+    +    
Sbjct: 189 CF------------EVGEGESLDLPCGLEEAIQRMEKGEHSIVYLKPSYAFGSVGKERFQ 236

Query: 153 VPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKV 212
           +P  A +++E+ L  FEK K+   +S    ++++  ++  G   FKEGK++ A  +Y+K+
Sbjct: 237 IPPHAELRYEVRLKSFEKAKESWEMSSAEKLEQSNIVKERGTAYFKEGKYKQALLQYKKI 296

Query: 213 LRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGL 272
           +    + +    EE +     R   HLN+A C LKL     +IE+CNK L+ +  + KGL
Sbjct: 297 VSWLEYESSFSGEEMQKVHALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGL 356

Query: 273 YRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLF 332
           +RRG A++A+ +F+ A+ DF+ ++++  S++   T      ++ R+++ ++ +K +  +F
Sbjct: 357 FRRGEAHLAVNDFDLARADFQKVLQLYPSNKAAKTQLAVCQQRTRRQL-AREKKLYANMF 415

Query: 333 DK 334
           ++
Sbjct: 416 ER 417

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90) (By similarity). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9QVC8|FKBP4_RAT Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Rattus norvegicus GN=Fkbp4 PE=1 SV=3

 Score =  108 bits (270), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 176/349 (50%), Gaps = 30/349 (8%)

Query: 38  FEVELVHLIQVRDMLGD--GRLIKRRIRDGKG-EFPMDCPLHDSLLCVHYKGMLLNEEKK 94
           FEVEL    +  D+  D  G +I+R    G+G   P D  + +  L  +Y   L ++ + 
Sbjct: 130 FEVELFEF-KGEDLTEDEDGGIIRRIRTRGEGYARPNDGAMVEVALEGYYNDRLFDQREL 188

Query: 95  VFYDTRVDNDGQPLEFSSGEGL-VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-N 152
            F            E   GE L +P G E  ++ M  GE ++V   P YA+    +    
Sbjct: 189 CF------------EVGEGESLDLPCGLEEAIQRMEKGEHSIVYLKPSYAFGSVGKERFQ 236

Query: 153 VPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKV 212
           +P  A +++E+ L  FEK K    ++ +  ++++  ++  G   FKEGK++ A  +Y+K+
Sbjct: 237 IPPHAELRYEVHLKSFEKAKASWEMNSEEKLEQSNIVKERGTVYFKEGKYKQALLQYKKI 296

Query: 213 LRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGL 272
           +    + +    EE +     R   HLN+A C LKL     +IE+CNK L+ +  + KGL
Sbjct: 297 VSWLEYESSFSGEEMQKVHALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGL 356

Query: 273 YRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLF 332
           +RRG A++A+ +F+ A+ DF+ ++++  S++   T      ++ R+++ ++ +K +  +F
Sbjct: 357 FRRGEAHLAVNDFDLARADFQKVLQLYPSNKAAKTQLAVCQQRTRRQL-AREKKLYANMF 415

Query: 333 DKKPGEISEVGIENQGEDQAAGKNENDDSEQESD-----GDEAQEFHEA 376
           ++   E      E++ + + A  +   D+E + +     G++AQ   EA
Sbjct: 416 ERLAEE------EHKAKTEVAAGDHPTDAEMKGEPNNVAGNQAQVKTEA 458

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90) (By similarity). Plays a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly. The PPIase activity controls neuronal growth cones via regulation of TRPC1 channel opening.

Rattus norvegicus (taxid: 10116)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q95L05|FKBP5_CHLAE Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Chlorocebus aethiops GN=FKBP5 PE=2 SV=1

 Score =  108 bits (269), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 164/339 (48%), Gaps = 20/339 (5%)

Query: 1   MGIGTMTREEKAVIYVTSQYLTPSP-LMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIK 59
           +G+ TM + E   +    +Y   S   +P +     + FE+EL+   +  D+L DG +I+
Sbjct: 92  IGVATMKKGEICHLLCKPEYAYGSAGSVPKIPSNATLFFEIELLDF-KGEDLLEDGGIIR 150

Query: 60  RRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL--- 116
           R  R G+G      P   + + +H +G      +++F       D + + F+ GEG    
Sbjct: 151 RTKRKGEG---YSNPNEGATVEIHLEGRC---GERMF-------DCRDVAFTVGEGEDHD 197

Query: 117 VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEKPKDWT 175
           +P G +  +  M   E  ++   P Y + +  +P   +   A + +E+ L  FEK K+  
Sbjct: 198 IPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESW 257

Query: 176 GLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRN 235
            +     +++A  ++  G   FK GK+  A  +Y K++          ++E K       
Sbjct: 258 EMDTKEKLEQAAIVKEKGTVYFKGGKYMRAVIQYGKIVSWLEMEYGLSEKESKASESFLL 317

Query: 236 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMM 295
              LN+A C LKL E  K++E C+K L  + A+ KGLYRRG A + + EFE A+ DFE +
Sbjct: 318 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKV 377

Query: 296 MKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDK 334
           ++V+  ++  A   +S  +K+ +E   + R+ +  +F K
Sbjct: 378 LEVNPQNKA-ARLQISMCQKKAKEHNERDRRIYANMFKK 415

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP. Interacts with the glucocorticoid receptor and modulates its response to glucocorticoids.

Chlorocebus aethiops (taxid: 9534)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	414
225440540	620	PREDICTED: peptidyl-prolyl isomerase PAS	0.963	0.643	0.763	1e-178
356504332	635	PREDICTED: peptidyl-prolyl isomerase PAS	0.891	0.581	0.796	1e-178
255574548	618	fk506 binding protein, putative [Ricinus	0.925	0.619	0.796	1e-177
449460353	589	PREDICTED: peptidyl-prolyl cis-trans iso	0.929	0.653	0.768	1e-169
224138922	621	predicted protein [Populus trichocarpa]	0.922	0.615	0.784	1e-169
312282321	635	unnamed protein product [Thellungiella h	0.833	0.543	0.817	1e-166
3080740	634	pasticcino 1-D [Arabidopsis thaliana]	0.917	0.599	0.744	1e-165
3080738	544	pasticcino 1-A [Arabidopsis thaliana]	0.917	0.698	0.744	1e-165
30693980	545	peptidyl-prolyl isomerase PASTICCINO1 [A	0.932	0.708	0.734	1e-165
7630021	634	pasticcino 1 [Arabidopsis thaliana]	0.932	0.608	0.734	1e-165

>gi|225440540|ref|XP_002273173.1| PREDICTED: peptidyl-prolyl isomerase PASTICCINO1 [Vitis vinifera] gi|297740281|emb|CBI30463.3| unnamed protein product [Vitis vinifera]

 Score =  631 bits (1628), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 307/402 (76%), Positives = 346/402 (86%), Gaps = 3/402 (0%)

Query: 1   MGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKR 60
           MG GTMTR EKAV+YVT+QY+T SPLMP++EG EEV FEVELVH IQVRDMLGDGRLIKR
Sbjct: 216 MGTGTMTRGEKAVLYVTNQYITQSPLMPIIEGVEEVLFEVELVHFIQVRDMLGDGRLIKR 275

Query: 61  RIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEG 120
           RI DG+G+FPMDCPLHDSLL VHYKGMLLNEEK VFY+TRVDN+GQPLEF SGEGLVPEG
Sbjct: 276 RIHDGRGDFPMDCPLHDSLLRVHYKGMLLNEEKTVFYNTRVDNNGQPLEFGSGEGLVPEG 335

Query: 121 FEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFD 180
            EMCVRLMLPGEIALVTCPPDYAYDKF RPANVPEGAH+QWEIELLGFE PKDWTGL+F+
Sbjct: 336 LEMCVRLMLPGEIALVTCPPDYAYDKFPRPANVPEGAHVQWEIELLGFEMPKDWTGLNFE 395

Query: 181 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLN 240
            IMDEA+KIR TGNRLFKEGKFELAKAKYEKVLR+FNHVNPQDDEEGKVF+  RN LHLN
Sbjct: 396 AIMDEADKIRGTGNRLFKEGKFELAKAKYEKVLREFNHVNPQDDEEGKVFLNARNSLHLN 455

Query: 241 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 300
           VAAC LK+GECRKSIEACNKVLDA+PAHVK LYRRGMAYM+ G+FEEA+ DF+MMM +DK
Sbjct: 456 VAACYLKMGECRKSIEACNKVLDASPAHVKALYRRGMAYMSAGDFEEARNDFKMMMSIDK 515

Query: 301 SSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPGEISEVGIENQGEDQAAGKNENDD 360
           S EPDATAAL KLK++ QEVE KAR QFKGLFDKKPG+I+E G++++G D+  G+NE +D
Sbjct: 516 SCEPDATAALVKLKQKEQEVERKARSQFKGLFDKKPGDIAEAGVDDRG-DKRLGENEKND 574

Query: 361 SEQESDGDEAQEFHEAAAEAPRKGCSTAFGLPVEDYFLLLDL 402
            +++SDGD  +EF EA    P  G  +        +F  L L
Sbjct: 575 DKEDSDGD--KEFQEAEDAPPPMGFLSHLWPTGRRFFTALGL 614

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504332|ref|XP_003520950.1| PREDICTED: peptidyl-prolyl isomerase PASTICCINO1-like [Glycine max]

 Score =  630 bits (1626), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 306/384 (79%), Positives = 334/384 (86%)

Query: 1   MGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKR 60
           M IGTM REEKAVIYVTSQYLT SPLMPV+EG +EVHFEVELVH IQVRDMLGDGRLIKR
Sbjct: 215 MAIGTMVREEKAVIYVTSQYLTESPLMPVIEGYDEVHFEVELVHFIQVRDMLGDGRLIKR 274

Query: 61  RIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEG 120
           RIRDGKG+FPMDCPLHDSLL VHYKG +LNEEK+VFYDTRVDND QPLEF SGEGLVPEG
Sbjct: 275 RIRDGKGDFPMDCPLHDSLLRVHYKGTVLNEEKRVFYDTRVDNDSQPLEFCSGEGLVPEG 334

Query: 121 FEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFD 180
           FEM VRLMLPGEIALVTCPPDYAYDKF RP NVPEGAHIQWEIELLGFE PKDWTGL F 
Sbjct: 335 FEMSVRLMLPGEIALVTCPPDYAYDKFPRPLNVPEGAHIQWEIELLGFETPKDWTGLDFK 394

Query: 181 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLN 240
            IM+EAE IR TGNRLFKEGK+ELAKAKYEKVLR+FNHVNPQDDEEGKVF   RNLLHLN
Sbjct: 395 SIMNEAENIRNTGNRLFKEGKYELAKAKYEKVLREFNHVNPQDDEEGKVFADTRNLLHLN 454

Query: 241 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 300
           VAAC LKLGEC+KSIE CNKVL+ANPAHVKGLYRRGMAYMA G+FEEA+ DF++MMKVDK
Sbjct: 455 VAACHLKLGECKKSIETCNKVLEANPAHVKGLYRRGMAYMAAGDFEEARADFKVMMKVDK 514

Query: 301 SSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPGEISEVGIENQGEDQAAGKNENDD 360
           S+E DATAAL KLK++ Q+VE KARKQFKGLFDKKPGEISE   +  G+   +   ++D+
Sbjct: 515 STESDATAALQKLKQKEQDVEKKARKQFKGLFDKKPGEISEAKADVDGDQITSESQKDDE 574

Query: 361 SEQESDGDEAQEFHEAAAEAPRKG 384
              +SDG  +++ HEA  EA R G
Sbjct: 575 VHGDSDGTNSEDSHEAPPEAQRTG 598

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574548|ref|XP_002528185.1| fk506 binding protein, putative [Ricinus communis] gi|223532397|gb|EEF34192.1| fk506 binding protein, putative [Ricinus communis]

 Score =  627 bits (1618), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 306/384 (79%), Positives = 335/384 (87%), Gaps = 1/384 (0%)

Query: 1   MGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKR 60
           M IGTMTREEKAVIYVTS+YLT SPLM V EGC+EVHFEVELVH  QVRDMLGDGRLIKR
Sbjct: 212 MAIGTMTREEKAVIYVTSEYLTESPLMSVAEGCDEVHFEVELVHFTQVRDMLGDGRLIKR 271

Query: 61  RIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEG 120
           R+ DG+GEFPMDCPLHDSLL VHYKGMLL+EE KVFYDTRVDNDGQPLEFSSGEGLVPEG
Sbjct: 272 RLCDGRGEFPMDCPLHDSLLRVHYKGMLLDEENKVFYDTRVDNDGQPLEFSSGEGLVPEG 331

Query: 121 FEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFD 180
           FEMCVRLMLPGEIALVTCPPDYAYDKF RPANVPEGAHIQWEIELLGFE PKDWTG+ F 
Sbjct: 332 FEMCVRLMLPGEIALVTCPPDYAYDKFQRPANVPEGAHIQWEIELLGFEMPKDWTGMDFP 391

Query: 181 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLN 240
            IM EAEKIR TGNRL+KEGKFELAKAKYEKVLR+FNHVNPQDDEEGKVFV  RNLL+LN
Sbjct: 392 TIMGEAEKIRNTGNRLYKEGKFELAKAKYEKVLREFNHVNPQDDEEGKVFVDTRNLLNLN 451

Query: 241 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 300
           +AAC LK+GEC+KSIE CNKVLDANPAH K LYRRGMAYM  G+FEEA+RDFEMMMK DK
Sbjct: 452 LAACYLKMGECKKSIEYCNKVLDANPAHAKALYRRGMAYMTDGDFEEARRDFEMMMKGDK 511

Query: 301 SSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPGEISEVGIENQGEDQAAGKNENDD 360
           SSE DA AAL KLK+++QEVE K RKQFKGLFDKKPGEI++ GI+   E++   +N+  D
Sbjct: 512 SSEADAMAALQKLKQKKQEVERKVRKQFKGLFDKKPGEIADAGIQG-AEERTVSENQKKD 570

Query: 361 SEQESDGDEAQEFHEAAAEAPRKG 384
            +++SD  E +   + AA APR G
Sbjct: 571 DQEDSDRIEEEALLQDAANAPRGG 594

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460353|ref|XP_004147910.1| PREDICTED: peptidyl-prolyl cis-trans isomerase PASTICCINO1-like [Cucumis sativus] gi|449519521|ref|XP_004166783.1| PREDICTED: peptidyl-prolyl cis-trans isomerase PASTICCINO1-like [Cucumis sativus]

 Score =  602 bits (1551), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 298/388 (76%), Positives = 329/388 (84%), Gaps = 3/388 (0%)

Query: 1   MGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKR 60
           MGIGTMTR EKAVI+VTSQYLTPSPL+ V +G EEV FEVELVH IQVRDMLGDGRLIKR
Sbjct: 182 MGIGTMTRGEKAVIFVTSQYLTPSPLITVEDGVEEVQFEVELVHFIQVRDMLGDGRLIKR 241

Query: 61  RIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEG 120
           RI DGKG+FPMDCPLHDSLL VHYK ML+ E+KK FYDT+VDNDGQPLEF SGEGLVPEG
Sbjct: 242 RIHDGKGDFPMDCPLHDSLLRVHYKAMLV-EDKKAFYDTKVDNDGQPLEFRSGEGLVPEG 300

Query: 121 FEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFD 180
           FEM VRLMLPGEIALVTCPPDYAYDKF RPANVP GAH+QWEIELLGFE PK+W GL F 
Sbjct: 301 FEMSVRLMLPGEIALVTCPPDYAYDKFPRPANVPAGAHVQWEIELLGFEMPKEWDGLDFK 360

Query: 181 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLN 240
            IMDEAEKIR TGNRLFKEGKFELAKAKYEKVLR+FNHVNPQDDEEGKVF   RN+L+LN
Sbjct: 361 SIMDEAEKIRNTGNRLFKEGKFELAKAKYEKVLREFNHVNPQDDEEGKVFSNTRNMLNLN 420

Query: 241 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 300
           VAAC LKLGECRKSIE CNKV++ANPA+ K LYRRGMAYM LG+FEEA+ DFEMM K DK
Sbjct: 421 VAACYLKLGECRKSIETCNKVIEANPANAKALYRRGMAYMTLGDFEEARNDFEMMKKADK 480

Query: 301 SSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPGEISEVGIENQGEDQAAGKNENDD 360
           SSE DATAAL KLK++ QEVE KARKQFKGLFDKKPGEISEVG  ++ E  +    EN D
Sbjct: 481 SSETDATAALLKLKQKEQEVEKKARKQFKGLFDKKPGEISEVGDGDREERNSGEIQENSD 540

Query: 361 SEQESDGDEAQEFHEAAA--EAPRKGCS 386
             ++++ D++ EF + +   + PR   S
Sbjct: 541 KLEQNEDDKSSEFSDDSTTDDQPRDWLS 568

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138922|ref|XP_002322935.1| predicted protein [Populus trichocarpa] gi|222867565|gb|EEF04696.1| predicted protein [Populus trichocarpa]

 Score =  599 bits (1545), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 302/385 (78%), Positives = 340/385 (88%), Gaps = 3/385 (0%)

Query: 1   MGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKR 60
           MGIGTMTREEKAVIYVT+QYLT SPLM VV G EEV FEVEL+H  QVRDMLGDGRLIKR
Sbjct: 215 MGIGTMTREEKAVIYVTNQYLTESPLMSVV-GLEEVQFEVELIHFTQVRDMLGDGRLIKR 273

Query: 61  RIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEG 120
           R+RDGKGEFPMDCPL DSLL VHYKGMLLNEEK V  DTR+DNDGQPLEFSSGEGLVPEG
Sbjct: 274 RLRDGKGEFPMDCPLQDSLLRVHYKGMLLNEEKTVVIDTRIDNDGQPLEFSSGEGLVPEG 333

Query: 121 FEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFD 180
           FEMCVRLMLPGE+ALVTCPPDYAYDKF RPANVPEGAHI+WEIELLGFE PKDWTGL F 
Sbjct: 334 FEMCVRLMLPGEVALVTCPPDYAYDKFTRPANVPEGAHIEWEIELLGFEMPKDWTGLDFQ 393

Query: 181 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLN 240
           G+MDEAEKIR TGNRLFKEGKFELAKAKYEKVLR+FNHVNPQDDEEGKVF+  RNLL+LN
Sbjct: 394 GVMDEAEKIRTTGNRLFKEGKFELAKAKYEKVLREFNHVNPQDDEEGKVFLNTRNLLNLN 453

Query: 241 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 300
           VAAC LKLGECRKSIE CNKVL+ANPAHVK LYRRGMAYM +G+FEEA+ DFEMM+KVDK
Sbjct: 454 VAACHLKLGECRKSIETCNKVLEANPAHVKALYRRGMAYMEVGDFEEARSDFEMMLKVDK 513

Query: 301 SSEPDATAA-LSKLKKQRQEVESKARKQFKGLFDKKPGEISEVGIENQGEDQAAGKNEND 359
           SSE DATAA     +KQ+Q+VE KAR+QFKGLFDKKPGEI++ G +++GE+Q+  +N+ +
Sbjct: 514 SSELDATAALKKLKQKQQQDVEKKARRQFKGLFDKKPGEIADAGTDDRGEEQSTSENQKN 573

Query: 360 DSEQESDGDEAQEFHEAAAEAPRKG 384
             +++S+G + ++  + A E PR+G
Sbjct: 574 GDQEDSNGTDTEDVEDVADE-PREG 597

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282321|dbj|BAJ34026.1| unnamed protein product [Thellungiella halophila]

 Score =  590 bits (1521), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 282/345 (81%), Positives = 306/345 (88%)

Query: 1   MGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKR 60
           +GIGTM R+EKAVIYV  QYLT SPLM +V+  EEVHFEVELVH IQVRDMLGDGRLIKR
Sbjct: 212 IGIGTMARKEKAVIYVRKQYLTESPLMHIVQDLEEVHFEVELVHFIQVRDMLGDGRLIKR 271

Query: 61  RIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEG 120
           RIRDG+GEFPMDCPL DS L VHYKGMLLNEEK VFYD+R+DN+ QPLEFSSGEGLVPEG
Sbjct: 272 RIRDGRGEFPMDCPLQDSRLSVHYKGMLLNEEKTVFYDSRIDNNDQPLEFSSGEGLVPEG 331

Query: 121 FEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFD 180
           FEMC RLMLPGE+ALV+CPPDYAYDKF RP  VPEGAHIQWEIELLGFE P+DWTGL+F 
Sbjct: 332 FEMCTRLMLPGELALVSCPPDYAYDKFPRPPGVPEGAHIQWEIELLGFETPRDWTGLNFQ 391

Query: 181 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLN 240
            IM+EAE IR TGNRLFKEGKFELAKAKYEKVLR+FNHVNPQDDEEGKVF   RN+LHLN
Sbjct: 392 SIMNEAENIRSTGNRLFKEGKFELAKAKYEKVLREFNHVNPQDDEEGKVFGDARNMLHLN 451

Query: 241 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 300
           VAACLLK GE RKS+E CNKVL+A P HVKGLYRRGMAYMA  E+E+A+ DF MM+KVDK
Sbjct: 452 VAACLLKTGEWRKSVETCNKVLEAKPGHVKGLYRRGMAYMAGAEYEDARNDFNMMIKVDK 511

Query: 301 SSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPGEISEVGIE 345
           SSE DATAAL KLK++ QE ESKARKQFKGLFDKKPGEI+EVG E
Sbjct: 512 SSESDATAALLKLKQKEQEAESKARKQFKGLFDKKPGEITEVGSE 556

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3080740|gb|AAC39445.1| pasticcino 1-D [Arabidopsis thaliana]

 Score =  587 bits (1512), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 285/383 (74%), Positives = 321/383 (83%), Gaps = 3/383 (0%)

Query: 1   MGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKR 60
           +GIGTM R+EKAVIYV  QYLT SPL+ + +  EEVHFEVELVH IQVRDMLGDGRLIKR
Sbjct: 215 IGIGTMARKEKAVIYVRKQYLTESPLLHIDQDLEEVHFEVELVHFIQVRDMLGDGRLIKR 274

Query: 61  RIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEG 120
           RIRDG+GEFPMDCPL DS L VHYKGMLLNEEK VFYD+++DN+ QPLEFSSGEGLVPEG
Sbjct: 275 RIRDGRGEFPMDCPLQDSRLSVHYKGMLLNEEKTVFYDSKIDNNDQPLEFSSGEGLVPEG 334

Query: 121 FEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFD 180
           FEMC RLMLPGEIALVTCPPDYAYDKF RP  V EGAH+QWEIELLGFE P+DWTGL+F 
Sbjct: 335 FEMCTRLMLPGEIALVTCPPDYAYDKFPRPPGVSEGAHVQWEIELLGFETPRDWTGLNFQ 394

Query: 181 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLN 240
            IMDEA+KIR TGNRLFKEGKFELAKAKYEKVLR+FNHVNPQD++EGK+F   RN+LHLN
Sbjct: 395 SIMDEADKIRSTGNRLFKEGKFELAKAKYEKVLREFNHVNPQDEDEGKIFGDTRNMLHLN 454

Query: 241 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 300
           VAACLLK+GE RKSIE CNKVL+A P HVKGLYRRGMAY+A GE+++A+ DF MM+KVDK
Sbjct: 455 VAACLLKMGEWRKSIETCNKVLEAKPGHVKGLYRRGMAYIAGGEYDDARNDFNMMIKVDK 514

Query: 301 SSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPGEISEVGIENQGEDQAAGKNENDD 360
           SSE DATAAL KLK++ QE ESKARKQFKGLFDK+PGEI+EVG E + E +     E  D
Sbjct: 515 SSEADATAALLKLKQKEQEAESKARKQFKGLFDKRPGEITEVGSEIREESKTI---EEVD 571

Query: 361 SEQESDGDEAQEFHEAAAEAPRK 383
             +++D DE  E         RK
Sbjct: 572 ETKDNDDDETLEEGATTVSTERK 594

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3080738|gb|AAC39444.1| pasticcino 1-A [Arabidopsis thaliana]

 Score =  586 bits (1510), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 285/383 (74%), Positives = 321/383 (83%), Gaps = 3/383 (0%)

Query: 1   MGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKR 60
           +GIGTM R+EKAVIYV  QYLT SPL+ + +  EEVHFEVELVH IQVRDMLGDGRLIKR
Sbjct: 125 IGIGTMARKEKAVIYVRKQYLTESPLLHIDQDLEEVHFEVELVHFIQVRDMLGDGRLIKR 184

Query: 61  RIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEG 120
           RIRDG+GEFPMDCPL DS L VHYKGMLLNEEK VFYD+++DN+ QPLEFSSGEGLVPEG
Sbjct: 185 RIRDGRGEFPMDCPLQDSRLSVHYKGMLLNEEKTVFYDSKIDNNDQPLEFSSGEGLVPEG 244

Query: 121 FEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFD 180
           FEMC RLMLPGEIALVTCPPDYAYDKF RP  V EGAH+QWEIELLGFE P+DWTGL+F 
Sbjct: 245 FEMCTRLMLPGEIALVTCPPDYAYDKFPRPPGVSEGAHVQWEIELLGFETPRDWTGLNFQ 304

Query: 181 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLN 240
            IMDEA+KIR TGNRLFKEGKFELAKAKYEKVLR+FNHVNPQD++EGK+F   RN+LHLN
Sbjct: 305 SIMDEADKIRSTGNRLFKEGKFELAKAKYEKVLREFNHVNPQDEDEGKIFGDTRNMLHLN 364

Query: 241 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 300
           VAACLLK+GE RKSIE CNKVL+A P HVKGLYRRGMAY+A GE+++A+ DF MM+KVDK
Sbjct: 365 VAACLLKMGEWRKSIETCNKVLEAKPGHVKGLYRRGMAYIAGGEYDDARNDFNMMIKVDK 424

Query: 301 SSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPGEISEVGIENQGEDQAAGKNENDD 360
           SSE DATAAL KLK++ QE ESKARKQFKGLFDK+PGEI+EVG E + E +     E  D
Sbjct: 425 SSEADATAALLKLKQKEQEAESKARKQFKGLFDKRPGEITEVGSEIREESKTI---EEVD 481

Query: 361 SEQESDGDEAQEFHEAAAEAPRK 383
             +++D DE  E         RK
Sbjct: 482 ETKDNDDDETLEEGATTVSTERK 504

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30693980|ref|NP_850701.1| peptidyl-prolyl isomerase PASTICCINO1 [Arabidopsis thaliana] gi|332645654|gb|AEE79175.1| peptidyl-prolyl isomerase PASTICCINO1 [Arabidopsis thaliana]

 Score =  586 bits (1510), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 288/392 (73%), Positives = 326/392 (83%), Gaps = 6/392 (1%)

Query: 1   MGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKR 60
           +GIGTM R+EKAVIYV  QYLT SPL+ + +  EEVHFEVELVH IQVRDMLGDGRLIKR
Sbjct: 125 IGIGTMARKEKAVIYVRKQYLTESPLLHIDQDLEEVHFEVELVHFIQVRDMLGDGRLIKR 184

Query: 61  RIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEG 120
           RIRDG+GEFPMDCPL DS L VHYKGMLLNEEK VFYD+++DN+ QPLEFSSGEGLVPEG
Sbjct: 185 RIRDGRGEFPMDCPLQDSRLSVHYKGMLLNEEKTVFYDSKIDNNDQPLEFSSGEGLVPEG 244

Query: 121 FEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFD 180
           FEMC RLMLPGEIALVTCPPDYAYDKF RP  V EGAH+QWEIELLGFE P+DWTGL+F 
Sbjct: 245 FEMCTRLMLPGEIALVTCPPDYAYDKFPRPPGVSEGAHVQWEIELLGFETPRDWTGLNFQ 304

Query: 181 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLN 240
            IMDEA+KIR TGNRLFKEGKFELAKAKYEKVLR+FNHVNPQD++EGK+F   RN+LHLN
Sbjct: 305 SIMDEADKIRSTGNRLFKEGKFELAKAKYEKVLREFNHVNPQDEDEGKIFGDTRNMLHLN 364

Query: 241 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 300
           VAACLLK+GE RKSIE CNKVL+A P HVKGLYRRGMAY+A GE+++A+ DF MM+KVDK
Sbjct: 365 VAACLLKMGEWRKSIETCNKVLEAKPGHVKGLYRRGMAYIAGGEYDDARNDFNMMIKVDK 424

Query: 301 SSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPGEISEVGIENQGEDQAAGKNENDD 360
           SSE DATAAL KLK++ QE ESKARKQFKGLFDK+PGEI+EVG E + E +     E  D
Sbjct: 425 SSEADATAALLKLKQKEQEAESKARKQFKGLFDKRPGEITEVGSEIREESKTI---EEVD 481

Query: 361 SEQESDGDEAQEFHEA---AAEAPRKGCSTAF 389
             +++D DE  E   A   + E  RK    A+
Sbjct: 482 ETKDNDDDETLEEEGATTVSTERKRKWSEKAW 513

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7630021|emb|CAB88363.1| pasticcino 1 [Arabidopsis thaliana]

 Score =  586 bits (1510), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 288/392 (73%), Positives = 326/392 (83%), Gaps = 6/392 (1%)

Query: 1   MGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKR 60
           +GIGTM R+EKAVIYV  QYLT SPL+ + +  EEVHFEVELVH IQVRDMLGDGRLIKR
Sbjct: 214 IGIGTMARKEKAVIYVRKQYLTESPLLHIDQDLEEVHFEVELVHFIQVRDMLGDGRLIKR 273

Query: 61  RIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEG 120
           RIRDG+GEFPMDCPL DS L VHYKGMLLNEEK VFYD+++DN+ QPLEFSSGEGLVPEG
Sbjct: 274 RIRDGRGEFPMDCPLQDSRLSVHYKGMLLNEEKTVFYDSKIDNNDQPLEFSSGEGLVPEG 333

Query: 121 FEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFD 180
           FEMC RLMLPGEIALVTCPPDYAYDKF RP  V EGAH+QWEIELLGFE P+DWTGL+F 
Sbjct: 334 FEMCTRLMLPGEIALVTCPPDYAYDKFPRPPGVSEGAHVQWEIELLGFETPRDWTGLNFQ 393

Query: 181 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLN 240
            IMDEA+KIR TGNRLFKEGKFELAKAKYEKVLR+FNHVNPQD++EGK+F   RN+LHLN
Sbjct: 394 SIMDEADKIRSTGNRLFKEGKFELAKAKYEKVLREFNHVNPQDEDEGKIFGDTRNMLHLN 453

Query: 241 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 300
           VAACLLK+GE RKSIE CNKVL+A P HVKGLYRRGMAY+A GE+++A+ DF MM+KVDK
Sbjct: 454 VAACLLKMGEWRKSIETCNKVLEAKPGHVKGLYRRGMAYIAGGEYDDARNDFNMMIKVDK 513

Query: 301 SSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPGEISEVGIENQGEDQAAGKNENDD 360
           SSE DATAAL KLK++ QE ESKARKQFKGLFDK+PGEI+EVG E + E +     E  D
Sbjct: 514 SSEADATAALLKLKQKEQEAESKARKQFKGLFDKRPGEITEVGSEIREESKTI---EEVD 570

Query: 361 SEQESDGDEAQEFHEA---AAEAPRKGCSTAF 389
             +++D DE  E   A   + E  RK    A+
Sbjct: 571 ETKDNDDDETLEEEGATTVSTERKRKWSEKAW 602

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	414
TAIR|locus:2084435	635	PAS1 "AT3G54010" [Arabidopsis	0.886	0.577	0.731	4e-145
UNIPROTKB|Q10KX6	632	Os03g0367000 "Peptidylprolyl i	0.884	0.579	0.720	1.7e-144
TAIR|locus:2090265	562	ROF1 "AT3G25230" [Arabidopsis	0.787	0.580	0.272	7.4e-31
UNIPROTKB|Q6K5Q1	682	P0579G08.8 "Putative peptidylp	0.828	0.502	0.285	2.2e-30
UNIPROTKB|Q9XFE4	585	OSJNBa0091C07.4 "OSJNBa0091C07	0.654	0.463	0.332	7.1e-30
UNIPROTKB|Q7F1F2	580	OJ1191_A10.119 "cDNA clone:J03	0.830	0.593	0.281	8.8e-30
UNIPROTKB|F1NP08	464	FKBP4 "Uncharacterized protein	0.705	0.629	0.284	2.1e-29
UNIPROTKB|F1NIM4	442	FKBP4 "Uncharacterized protein	0.649	0.608	0.290	9.1e-29
TAIR|locus:2152561	578	ROF2 "AT5G48570" [Arabidopsis	0.681	0.487	0.282	3.9e-28
UNIPROTKB|F1SK86	456	FKBP4 "Uncharacterized protein	0.710	0.644	0.254	8.3e-28

TAIR|locus:2084435 PAS1 "AT3G54010" [Arabidopsis thaliana (taxid:3702)]

 Score = 1418 (504.2 bits), Expect = 4.0e-145, P = 4.0e-145
 Identities = 272/372 (73%), Positives = 308/372 (82%)

Query:     1 MGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCXXXXXXXXXXXXIQVRDMLGDGRLIKR 60
             +GIGTM R+EKAVIYV  QYLT SPL+ + +              IQVRDMLGDGRLIKR
Sbjct:   215 IGIGTMARKEKAVIYVRKQYLTESPLLHIDQDLEEVHFEVELVHFIQVRDMLGDGRLIKR 274

Query:    61 RIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEG 120
             RIRDG+GEFPMDCPL DS L VHYKGMLLNEEK VFYD+++DN+ QPLEFSSGEGLVPEG
Sbjct:   275 RIRDGRGEFPMDCPLQDSRLSVHYKGMLLNEEKTVFYDSKIDNNDQPLEFSSGEGLVPEG 334

Query:   121 FEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFD 180
             FEMC RLMLPGEIALVTCPPDYAYDKF RP  V EGAH+QWEIELLGFE P+DWTGL+F 
Sbjct:   335 FEMCTRLMLPGEIALVTCPPDYAYDKFPRPPGVSEGAHVQWEIELLGFETPRDWTGLNFQ 394

Query:   181 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLN 240
              IMDEA+KIR TGNRLFKEGKFELAKAKYEKVLR+FNHVNPQD++EGK+F   RN+LHLN
Sbjct:   395 SIMDEADKIRSTGNRLFKEGKFELAKAKYEKVLREFNHVNPQDEDEGKIFGDTRNMLHLN 454

Query:   241 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 300
             VAACLLK+GE RKSIE CNKVL+A P HVKGLYRRGMAY+A GE+++A+ DF MM+KVDK
Sbjct:   455 VAACLLKMGEWRKSIETCNKVLEAKPGHVKGLYRRGMAYIAGGEYDDARNDFNMMIKVDK 514

Query:   301 SSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPGEISEVGIENQGEDQAAGK----N 356
             SSE DATAAL KLK++ QE ESKARKQFKGLFDK+PGEI+EVG E + E +   +     
Sbjct:   515 SSEADATAALLKLKQKEQEAESKARKQFKGLFDKRPGEITEVGSEIREESKTIEEVDETK 574

Query:   357 ENDDSEQ-ESDG 367
             +NDD E  E +G
Sbjct:   575 DNDDDETLEEEG 586

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IBA

GO:0005528 "FK506 binding" evidence=ISS;IBA

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006457 "protein folding" evidence=IEA

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005515 "protein binding" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009880 "embryonic pattern specification" evidence=IMP

GO:0030010 "establishment of cell polarity" evidence=IMP

GO:0042761 "very long-chain fatty acid biosynthetic process" evidence=IMP

GO:0048527 "lateral root development" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0009735 "response to cytokinin stimulus" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0030154 "cell differentiation" evidence=IMP

GO:0048364 "root development" evidence=IMP

UNIPROTKB|Q10KX6 Os03g0367000 "Peptidylprolyl isomerase PASTICCINO1, putative, expressed" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1412 (502.1 bits), Expect = 1.7e-144, P = 1.7e-144
 Identities = 266/369 (72%), Positives = 308/369 (83%)

Query:     1 MGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCXXXXXXXXXXXXIQVRDMLGDGRLIKR 60
             MGIG+M REEKA+IYVTS YLT S L+P +EG             +QVRDMLGDGRLIKR
Sbjct:   220 MGIGSMAREEKAIIYVTSAYLTNSSLIPQLEGIEEVQFEVELVQFVQVRDMLGDGRLIKR 279

Query:    61 RIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEG 120
             R+ DGKGEFPMDCPLHDSLL VHYKGMLL+E K +FYDTRVDN G+PLEF SGEGLVPEG
Sbjct:   280 RVVDGKGEFPMDCPLHDSLLRVHYKGMLLDEPKSIFYDTRVDNHGEPLEFCSGEGLVPEG 339

Query:   121 FEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFD 180
             FEMCVRLMLPGE ++VTCPPD+AYDKF RPANVPEGAH+QWEIELLGFE PKDWTG +F 
Sbjct:   340 FEMCVRLMLPGEKSIVTCPPDFAYDKFPRPANVPEGAHVQWEIELLGFEMPKDWTGFTFQ 399

Query:   181 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLN 240
              IMD+AEKI+ TGNRLFKEGKFELAKAKYEKVLR++NHV+PQDD+EGK+F   R+ LHLN
Sbjct:   400 EIMDDAEKIKTTGNRLFKEGKFELAKAKYEKVLREYNHVHPQDDDEGKIFANSRSSLHLN 459

Query:   241 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 300
             VAAC  K+GE RKSI+ CNKVL+ANP HVK LYRRGM+YM LG+F++A++DFE M+ VDK
Sbjct:   460 VAACYQKMGEYRKSIDTCNKVLEANPVHVKALYRRGMSYMLLGDFDDAKKDFEKMIAVDK 519

Query:   301 SSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPGEISEVGI-ENQG-EDQAAGKNEN 358
             SSEPDATAAL+KLK+  QE E KARKQFKGLFDKKPGEISEVG+ E +G +    G  E 
Sbjct:   520 SSEPDATAALNKLKQTIQETEKKARKQFKGLFDKKPGEISEVGVGEPEGNKTDTTGSGEA 579

Query:   359 -DDSEQESD 366
                +++++D
Sbjct:   580 ASTADRDTD 588

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

TAIR|locus:2090265 ROF1 "AT3G25230" [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 7.4e-31, P = 7.4e-31
 Identities = 93/341 (27%), Positives = 168/341 (49%)

Query:     3 IGTMTREEKAVIYVTSQYLTPSPLMPVVEGCXXXXXXXXXXXXIQ------VRDMLGDGR 56
             + TM + EK ++ V  QY       P   G             ++      V ++  D +
Sbjct:   213 VKTMKKGEKVLLTVKPQYGFGEKGKPASAGEGAVPPNATLEINLELVSWKTVSEVTDDNK 272

Query:    57 LIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL 116
             ++K+ +++G G    + P   +++ V   G L  ++  VF       + +P EF + E  
Sbjct:   273 VVKKVLKEGDG---YERPNEGAVVKVKLIGKL--QDGTVFLKKGHGENEEPFEFKTDEEQ 327

Query:   117 VPEGFEMCVRLMLPGEIALVTCPPDYAY---DKFLRPANVPEGAHIQWEIELLGFEKPKD 173
             V +G +  V  M  GE+ALVT  P+YA+   +     A VP  + + +E++LL F+K ++
Sbjct:   328 VVDGLDRAVMKMKKGEVALVTIDPEYAFGSNESQQELAVVPPNSTVTYEVDLLTFDKERE 387

Query:   174 WTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGK 233
                ++ +  ++ A K +  GN  FK GK+ LA  +YEK ++   +     +EE K     
Sbjct:   388 SWDMNTEEKIEAASKKKEEGNSKFKGGKYSLASKRYEKAVKFIEYDTSFSEEEKKQAKAL 447

Query:   234 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
             +   +LN AAC LKL + +++ + C KVL+    +VK LYRR  AYM L + + A+ D +
Sbjct:   448 KVACNLNDAACKLKLKDYKQAEKLCTKVLELESTNVKALYRRAQAYMELSDLDLAEFDVK 507

Query:   294 MMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDK 334
               +++D ++  +      +LK++ +E   K  K +  +F K
Sbjct:   508 KALEIDPNNR-EVKLEQKRLKEKMKEFNKKEAKFYGNMFAK 547

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IBA

GO:0005528 "FK506 binding" evidence=ISS;IBA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0009408 "response to heat" evidence=RCA;IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006457 "protein folding" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009845 "seed germination" evidence=IMP

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IDA

GO:0071944 "cell periphery" evidence=IDA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP

UNIPROTKB|Q6K5Q1 P0579G08.8 "Putative peptidylprolyl isomerase" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 343 (125.8 bits), Expect = 2.2e-30, P = 2.2e-30
 Identities = 104/364 (28%), Positives = 177/364 (48%)

Query:     3 IGTMTREEKAVIYVTSQYLTPSPLMPVVEGCXXXXXXXXXXXXIQ------VRDMLGDGR 56
             + TM + EKA++ V  QY       P                 ++      V ++  D +
Sbjct:   269 VKTMKKNEKALLTVKPQYGFGEQGRPAARDEAAIPPNATLHINLELVSWKAVTEIGNDKK 328

Query:    57 LIKRRIRDGKG-EFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEG 115
             ++K+ + +G+G E P DC    +L+ V   G L  E+  +F     D D +P EF + E 
Sbjct:   329 ILKKILHEGEGYERPSDC----TLVRVKLIGKL--EDGTIFVTRGHDGD-EPFEFKTDED 381

Query:   116 LVPEGFEMCVRLMLPGEIALVTCPPDYAY--DKFLRPANV-PEGAHIQWEIELLGFEKPK 172
              V EG +  V  M  GE+ALVT PP+YA+  D+  +  +V P  + + +E+EL+ F+K K
Sbjct:   382 QVVEGLDKAVLSMKKGEVALVTIPPEYAFGSDETRQDLSVVPPNSTVYYEVELVSFDKEK 441

Query:   173 D-WTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFV 231
             + W        ++ A K +  GN  FK  K+  A  +Y K L    + +   +EE ++  
Sbjct:   442 ESWDMKENTEKIEAAAKKKDEGNAWFKMEKYARASKRYGKALNFIQYDSSFSEEEKQLSK 501

Query:   232 GKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRD 291
               +    LN AAC LKL + +++ E C +VL+ +  +VK  YRR  A+M L +F+ A+ D
Sbjct:   502 PLKVSCKLNNAACKLKLKDYKEAKELCTEVLELDSMNVKAFYRRAQAHMYLVDFDLAELD 561

Query:   292 FEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPGEISEVGIENQGEDQ 351
              +  +++D  +  D      +LK++ +E + K  K +  +  K   ++ +   E  G  Q
Sbjct:   562 IKKALEIDPDNR-DVKMGYRRLKEKVKEQKRKETKLYGNMISKL-SKLEDSETEG-GTTQ 618

Query:   352 AAGK 355
             A  K
Sbjct:   619 APSK 622

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|Q9XFE4 OSJNBa0091C07.4 "OSJNBa0091C07.4 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 336 (123.3 bits), Expect = 7.1e-30, P = 7.1e-30
 Identities = 98/295 (33%), Positives = 152/295 (51%)

Query:    51 MLGDG-RLIKRRIRDGKG-EFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPL 108
             ++GD  R++K+ +++G+G E P D     +++ V + G L  E+  VF     D D +P 
Sbjct:   277 LIGDDKRILKKVLKEGEGYERPND----GAVVRVRFIGKL--EDGTVFSKKGHDGD-EPF 329

Query:   109 EFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRP---ANVPEGAHIQWEIEL 165
             EF + E  V EG +  V  M  GE+ALV  PP +A+         A VP  + + +E+EL
Sbjct:   330 EFRTDEEQVIEGLDRTVVTMKKGEVALVRLPPQHAFGSTETKQDLAVVPANSTVWYEVEL 389

Query:   166 LGFEKPKDWTGLSFDGIMDEAEKIRVT------GNRLFKEGKFELAKAKYEKVLRDFNHV 219
             + FEK K+    S+D + D AEKI         GN  FK GK+  A  +YEK  +   + 
Sbjct:   390 VSFEKEKE----SWD-LKDNAEKIEAAAKKKDEGNVWFKMGKYAKASKRYEKAAKYIEYD 444

Query:   220 NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAY 279
             +   D+E K     +    LN AAC LKL E R++ + C KVL+    +VK LYRR  AY
Sbjct:   445 SSFTDDEKKQSKALKVSCKLNNAACKLKLKEYREAEKLCTKVLELESTNVKALYRRTQAY 504

Query:   280 MALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDK 334
             + L + E A+ D +  +++D  +  D       LK++ +E   +  K +  +F K
Sbjct:   505 IELADLELAELDVKKALEIDPDNR-DVKMVYKTLKEKIKEYNKRDAKFYGNMFAK 558

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|Q7F1F2 OJ1191_A10.119 "cDNA clone:J033121G16, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 335 (123.0 bits), Expect = 8.8e-30, P = 8.8e-30
 Identities = 102/362 (28%), Positives = 173/362 (47%)

Query:     3 IGTMTREEKAVIYVTSQYLTPSPLMPVV--EGCXXXXXXXXXXXXI----QVRDMLGDGR 56
             + TM + EK ++ V  QY       P    EG             +     V ++  D +
Sbjct:   220 VKTMKKAEKVLLTVKPQYGFGENGRPAAGEEGAVPPNATLLVNLELVSWKTVTEIGDDKK 279

Query:    57 LIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDG-QPLEFSSGEG 115
             ++K+ + +G G    + P   +++ V   G L  ++  +F  T+  +D  +P EF + E 
Sbjct:   280 ILKKVLTEGTG---YERPNEGAVVKVKITGKL--QDGTIF--TKKGHDEPEPFEFKTDEE 332

Query:   116 LVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRP---ANVPEGAHIQWEIELLGFEKPK 172
              V +G +  V  M  GE+ALVT PP+YA+         A VP  + + +E+EL+ F K K
Sbjct:   333 EVIDGIDRAVLNMKNGEVALVTIPPEYAFGSTESKQDLAVVPPNSTVIYEVELVSFVKDK 392

Query:   173 DWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVG 232
             +   L+    ++ A   +  GN LFK GK+  A  +YEK  +   + +   ++E K    
Sbjct:   393 ESWDLNNTEKIETAGAKKEEGNALFKLGKYVRASKRYEKAAKFIEYDSSFSEDEKKQSKQ 452

Query:   233 KRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDF 292
              +   +LN AAC LKL + +++ + C KVL+ +  +VK LYRR  AYM L + E A+ D 
Sbjct:   453 LKVTCNLNNAACKLKLKDYKQAEKLCTKVLELDSQNVKALYRRAQAYMQLADLELAEVDI 512

Query:   293 EMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPGEISEVGIENQGEDQA 352
             +  +++D  +  D       LK++ +E   K  K +  +F K   + +E G    G +  
Sbjct:   513 KKALEIDPDNR-DVKLTYKNLKEKVKEYNKKDAKFYSNMFAKMTKQPAEDGKAGSGAESK 571

Query:   353 AG 354
              G
Sbjct:   572 QG 573

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|F1NP08 FKBP4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 90/316 (28%), Positives = 165/316 (52%)

Query:    54 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 113
             DG +I RRIR  KGE  +  P   +L+ + ++G   +   + F       D + L F  G
Sbjct:   140 DGGII-RRIRK-KGEGYLK-PNEGALVEIQFEGRYRD---RAF-------DKRELRFEIG 186

Query:   114 EGL---VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFE 169
             EG    +P G E  ++ M   E ++    P+Y +    +    +P  A +Q+E++L  FE
Sbjct:   187 EGDNYDLPHGLEKAIQKMEKSEESIFYLKPNYGFGSTGKEKFQIPPDAELQYEVKLKSFE 246

Query:   170 KPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKV 229
             K K+   ++ +  ++++  ++  G + FKEGK++ A  +Y+K++    H +   DEE   
Sbjct:   247 KAKESWEMNTEEKLEQSCMVKERGTQYFKEGKYKRAALQYKKIVLWLEHESGLSDEEDTK 306

Query:   230 FVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQ 289
                 R   HLN+A C LKL E  +++E CNK L+ + ++ KGL+RRG A++A+ +FE A+
Sbjct:   307 AKSLRLAAHLNLAMCHLKLKEYSQALENCNKALELDSSNEKGLFRRGEAHLAVNDFELAR 366

Query:   290 RDFEMMMKV---DKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDK--KPGEISEVGI 344
              DF+ ++++   +K+++        K+++Q ++ +      F+ L DK  KP    +   
Sbjct:   367 GDFQKVIQLYPSNKAAKVQLVTCQQKIREQHEKEKKMYANMFQRLADKELKPATTLQTSH 426

Query:   345 ENQGE--DQAAGKNEN 358
                 E  D+  G ++N
Sbjct:   427 TEDAEMKDEQNGVDDN 442

GO:0006457 "protein folding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006463 "steroid hormone receptor complex assembly" evidence=IEA

GO:0007566 "embryo implantation" evidence=IEA

GO:0030521 "androgen receptor signaling pathway" evidence=IEA

GO:0030850 "prostate gland development" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0031503 "protein complex localization" evidence=IEA

GO:0035259 "glucocorticoid receptor binding" evidence=IEA

GO:0046661 "male sex differentiation" evidence=IEA

GO:0051219 "phosphoprotein binding" evidence=IEA

UNIPROTKB|F1NIM4 FKBP4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 84/289 (29%), Positives = 156/289 (53%)

Query:    54 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 113
             DG +I RRIR  KGE  +  P   +L+ + ++G   +   + F       D + L F  G
Sbjct:   140 DGGII-RRIRK-KGEGYLK-PNEGALVEIQFEGRYRD---RAF-------DKRELRFEIG 186

Query:   114 EGL---VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFE 169
             EG    +P G E  ++ M   E ++    P+Y +    +    +P  A +Q+E++L  FE
Sbjct:   187 EGDNYDLPHGLEKAIQKMEKSEESIFYLKPNYGFGSTGKEKFQIPPDAELQYEVKLKSFE 246

Query:   170 KPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKV 229
             K K+   ++ +  ++++  ++  G + FKEGK++ A  +Y+K++    H +   DEE   
Sbjct:   247 KAKESWEMNTEEKLEQSCMVKERGTQYFKEGKYKRAALQYKKIVLWLEHESGLSDEEDTK 306

Query:   230 FVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQ 289
                 R   HLN+A C LKL E  +++E CNK L+ + ++ KGL+RRG A++A+ +FE A+
Sbjct:   307 AKSLRLAAHLNLAMCHLKLKEYSQALENCNKALELDSSNEKGLFRRGEAHLAVNDFELAR 366

Query:   290 RDFEMMMKV---DKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKK 335
              DF+ ++++   +K+++        K+++Q ++ +      F+ L DK+
Sbjct:   367 GDFQKVIQLYPSNKAAKVQLVTCQQKIREQHEKEKKMYANMFQRLADKE 415

GO:0006457 "protein folding" evidence=IEA

TAIR|locus:2152561 ROF2 "AT5G48570" [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 82/290 (28%), Positives = 151/290 (52%)

Query:    48 VRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQP 107
             V ++  D ++IK+ +++G+G    + P   +++ +   G L  +   VF     + D +P
Sbjct:   273 VVEVTDDRKVIKKILKEGEG---YERPNEGAIVKLKLIGKL-QDGTTVFVKKGHEEDEEP 328

Query:   108 LEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAY---DKFLRPANVPEGAHIQWEIE 164
              EF   E  V EG E  V  M  GE+AL+T  P+YA+   +     A +P  + + +E+E
Sbjct:   329 FEFKIDEEQVIEGLEKAVMGMKKGEVALITISPEYAFGSSESKQELAVIPPNSTVYYEVE 388

Query:   165 LLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDD 224
             L+ F K K+   ++    ++ A K +  GN LFK GK+  A  +YE+ ++   + +  D+
Sbjct:   389 LVSFIKEKESWDMNTQERIEAAGKKKEEGNVLFKAGKYARASKRYERGVKYIEYDSTFDE 448

Query:   225 EEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGE 284
             EE K     +   +LN AAC LKL + +++ +   KVL+ +  +VK +YRR  AY+   +
Sbjct:   449 EEKKKSKDLKIACNLNDAACKLKLKDYKEAAKLSTKVLEMDSRNVKAMYRRAHAYLETAD 508

Query:   285 FEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDK 334
              + A+ D +  +++D  ++ +      KLK++ +E   K  K +  +  K
Sbjct:   509 LDLAELDIKKALEIDPDNK-EVKIEYKKLKEKVKEYNKKDAKFYSNMLSK 557

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IBA

GO:0005528 "FK506 binding" evidence=ISS;IBA

GO:0005634 "nucleus" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;RCA

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005773 "vacuole" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

UNIPROTKB|F1SK86 FKBP4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 311 (114.5 bits), Expect = 8.3e-28, P = 8.3e-28
 Identities = 79/310 (25%), Positives = 169/310 (54%)

Query:    54 DGRLIKRRIRDGKGEF-PMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSS 112
             DG +I+R    G+G   P D  + +  L  +YK  +  +++++ ++     +G+ ++   
Sbjct:   147 DGGIIRRIQTRGEGYARPNDGAIVEVALEGYYKDQIF-DQREIRFEV---GEGETMD--- 199

Query:   113 GEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEKP 171
                 +P G E  ++ M  GE ++V   P YA+    +   ++P  A +++E+ L  FEK 
Sbjct:   200 ----LPCGLEKAIQRMEKGEHSIVYLKPSYAFGSAGKEKFHIPPNAELKYEVHLKSFEKA 255

Query:   172 KDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFV 231
             K+   +S +  ++++  ++  G   FKEGK++ A  +Y+K++    + +   +E+ +   
Sbjct:   256 KESWEMSSEEKLEQSSIVKERGTVYFKEGKYKQALVQYKKIVSWLEYESSFSNEDAQKAQ 315

Query:   232 GKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRD 291
               R   HLN+A C LKL     +IE CNK L+ +  + KGL+RRG A++A+ +F+ A+ D
Sbjct:   316 ALRLASHLNLAMCYLKLQSFSAAIENCNKALELDSNNEKGLFRRGEAHLAVNDFDLARAD 375

Query:   292 FEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPGEISEVGI--ENQGE 349
             F+ ++++  S++  A A L+  +++ ++  ++ +K +  +F++   E S+  +  + Q +
Sbjct:   376 FQKVLQLYPSNKA-AKAQLALCQQRIRKQLAREKKLYANMFERLAEEESKAKVSGDQQAD 434

Query:   350 DQAAGKNEND 359
              +   + +ND
Sbjct:   435 TEMKEEQKND 444

GO:0051219 "phosphoprotein binding" evidence=IEA

GO:0046661 "male sex differentiation" evidence=IEA

GO:0035259 "glucocorticoid receptor binding" evidence=IEA

GO:0031503 "protein complex localization" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0030850 "prostate gland development" evidence=IEA

GO:0030521 "androgen receptor signaling pathway" evidence=IEA

GO:0007566 "embryo implantation" evidence=IEA

GO:0006463 "steroid hormone receptor complex assembly" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.2.1	0.921
4th Layer	5.2.1.8	0.914

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	414
pfam00254	94	pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-t	3e-17
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-15
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-08
pfam13414	69	pfam13414, TPR_11, TPR repeat	5e-08
pfam13414	69	pfam13414, TPR_11, TPR repeat	1e-06
COG0545	205	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans	1e-06
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	1e-06
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	0.001
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.002
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	0.002
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	0.003
pfam07719	34	pfam07719, TPR_2, Tetratricopeptide repeat	0.004

>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase

 Score = 76.1 bits (188), Expect = 3e-17
 Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 5/86 (5%)

Query: 82  VHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPD 141
           VHY G L +    VF  ++  + G+P EF+ G G V  G++  +  M  GE   +T PP+
Sbjct: 13  VHYTGKLED--GTVFDSSK--DRGKPFEFTLGSGQVIPGWDEGLLGMKVGEKRKLTIPPE 68

Query: 142 YAY-DKFLRPANVPEGAHIQWEIELL 166
            AY ++ L    +P  A + +E+ELL
Sbjct: 69  LAYGEEGLAGGVIPPNATLVFEVELL 94

Length = 94

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 70.9 bits (174), Expect = 2e-15
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 15/109 (13%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
           GN  +K G ++ A   YEK L     ++P + +            + N+AA   KLG+  
Sbjct: 7   GNLYYKLGDYDEALEYYEKAL----ELDPDNAD-----------AYYNLAAAYYKLGKYE 51

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 301
           +++E   K L+ +P + K  Y  G+AY  LG++EEA   +E  +++D +
Sbjct: 52  EALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 239 LNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 298
           LN+     KLG+  +++E   K L+ +P +    Y    AY  LG++EEA  D+E  +++
Sbjct: 4   LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL 63

Query: 299 DKSSEPDATAALSKLKKQRQEVESKARKQFK 329
           D  +   A   L     +  + E +A + ++
Sbjct: 64  DPDN-AKAYYNLGLAYYKLGKYE-EALEAYE 92

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 49.2 bits (118), Expect = 5e-08
 Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 236 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGE-FEEAQRDFEM 294
               N+   L KLG+  ++IEA  K L+ +P + +  Y   +AY+ LG+ +EEA  D E 
Sbjct: 4   EALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEK 63

Query: 295 MMKVDK 300
            +++D 
Sbjct: 64  ALELDP 69

Length = 69

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 16/84 (19%)

Query: 184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 243
           D AE ++  GN LFK G ++ A   YEK L     ++P + E            + N+A 
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALE----LDPDNAE-----------AYYNLAL 45

Query: 244 CLLKLGECRKS-IEACNKVLDANP 266
             LKLG+  +  +E   K L+ +P
Sbjct: 46  AYLKLGKDYEEALEDLEKALELDP 69

Length = 69

>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 10/114 (8%)

Query: 55  GRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGE 114
             L  + ++ G G  P         + VHY G L++    VF D+  D  GQP EF  G 
Sbjct: 101 SGLQYKVLKAGDGAAPKK----GDTVTVHYTGTLID--GTVF-DSSYDR-GQPAEFPLGG 152

Query: 115 GLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF 168
             V  G++  ++ M  G    +T PP+ AY +   P  +P  + + +E+ELL  
Sbjct: 153 --VIPGWDEGLQGMKVGGKRKLTIPPELAYGERGVPGVIPPNSTLVFEVELLDV 204

Length = 205

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 50.0 bits (119), Expect = 1e-06
 Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 20/145 (13%)

Query: 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACL 245
           A K++  GN+ ++   F  A   Y K +         + +   V+       + N AAC 
Sbjct: 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAI---------ECKPDPVY-------YSNRAACH 170

Query: 246 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPD 305
             LG+  K +E     L+ +P + K L RR  AY  LG++ +A  D      +D      
Sbjct: 171 NALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQ 230

Query: 306 ATAALSK-LKKQRQEVESKARKQFK 329
           +  A+ + LKK     ESKA++  +
Sbjct: 231 SAQAVERLLKKF---AESKAKEILE 252

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 12/55 (21%), Positives = 20/55 (36%)

Query: 245 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 299
            L+ G+  +++ A    L   P   + L   G A +  G   EA       +  D
Sbjct: 7   ALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAAD 61

Length = 65

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 37/161 (22%), Positives = 66/161 (40%), Gaps = 25/161 (15%)

Query: 198 KEGKFELAKAKYEKVLR-DFNHVN-----------PQDDEEGKVFVGKRNLLH------- 238
           +EG  + A  ++EKVL  D  ++              ++EE   ++ K   L+       
Sbjct: 511 QEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPA 570

Query: 239 LNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 298
           L +A   L  G+ +K++   N+  DA P   +     G A +A G+  +A   F+ ++ +
Sbjct: 571 LALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL 630

Query: 299 DKSSEPDATAALSKLKK--QRQEVESKARKQFKGLFDKKPG 337
                PD+  AL  L       +  +KA    K   + KP 
Sbjct: 631 Q----PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD 667

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 7/64 (10%)

Query: 237 LHLNVAACLLKLGECRKSIEACNKVL-------DANPAHVKGLYRRGMAYMALGEFEEAQ 289
              N+A  L +LG+  +++E   K L       + +P   + L      Y+ALG+++EA 
Sbjct: 7   ALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEAL 66

Query: 290 RDFE 293
              E
Sbjct: 67  EYLE 70

Length = 78

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 34.7 bits (81), Expect = 0.003
 Identities = 11/33 (33%), Positives = 21/33 (63%)

Query: 269 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 301
            K LY  G AY+ LG+++EA   +E  ++++ +
Sbjct: 1   AKALYNLGNAYLKLGKYDEALEYYEKALELNPN 33

Length = 34

>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat

 Score = 34.4 bits (80), Expect = 0.004
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 269 VKGLYRRGMAYMALGEFEEAQRDFE 293
            + LY  G+AY  LG++EEA   +E
Sbjct: 1   AEALYNLGLAYYKLGDYEEALEAYE 25

This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	414
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	100.0
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	100.0
KOG0549	188	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.95
KOG0544	108	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.94
COG0545	205	FkpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.9
KOG0553	304	consensus TPR repeat-containing protein [General f	99.87
KOG4234	271	consensus TPR repeat-containing protein [General f	99.85
PRK11570	206	peptidyl-prolyl cis-trans isomerase; Provisional	99.79
TIGR03516	177	ppisom_GldI peptidyl-prolyl isomerase, gliding mot	99.78
KOG0552	226	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.78
PF00254	94	FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomer	99.73
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.73
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.72
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.71
PRK10902	269	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.71
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	99.69
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.66
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.66
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.64
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.6
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.6
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	99.59
PRK15359	144	type III secretion system chaperone protein SscB;	99.51
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.48
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	99.46
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.36
KOG0544	108	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.33
PRK15095	156	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.3
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.3
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.28
PRK11189	296	lipoprotein NlpI; Provisional	99.24
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.2
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.17
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.15
PRK10737	196	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.14
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	99.12
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.11
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.11
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.09
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.09
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.04
COG1047	174	SlpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.03
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.02
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.01
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.01
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.01
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.99
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.99
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.97
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.94
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.93
PRK15359	144	type III secretion system chaperone protein SscB;	98.91
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.91
KOG1126	638	consensus DNA-binding cell division cycle control	98.88
PRK12370	553	invasion protein regulator; Provisional	98.86
PRK12370	553	invasion protein regulator; Provisional	98.86
KOG1125	579	consensus TPR repeat-containing protein [General f	98.85
KOG4555	175	consensus TPR repeat-containing protein [Function	98.84
PRK11189	296	lipoprotein NlpI; Provisional	98.84
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.84
PF13371	73	TPR_9: Tetratricopeptide repeat	98.84
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.83
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.82
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.82
PRK15331	165	chaperone protein SicA; Provisional	98.82
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.81
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.8
KOG1126	638	consensus DNA-binding cell division cycle control	98.78
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.76
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.74
PRK10803	263	tol-pal system protein YbgF; Provisional	98.74
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.74
KOG0553	304	consensus TPR repeat-containing protein [General f	98.73
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.71
PLN02789	320	farnesyltranstransferase	98.71
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.7
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.7
PF13512	142	TPR_18: Tetratricopeptide repeat	98.7
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.69
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.69
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.67
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.66
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.65
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.63
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.63
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.62
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.61
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.6
KOG1310	758	consensus WD40 repeat protein [General function pr	98.6
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.58
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.57
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.57
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.56
PLN02789	320	farnesyltranstransferase	98.55
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.54
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.53
PF00254	94	FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomer	98.53
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.53
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.52
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.51
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.5
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.5
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.49
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.49
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.48
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.47
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.46
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.43
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.41
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.39
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.38
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.37
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.36
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.36
KOG2003	840	consensus TPR repeat-containing protein [General f	98.35
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.34
PF13371	73	TPR_9: Tetratricopeptide repeat	98.32
TIGR00115	408	tig trigger factor. Trigger factor is a ribosome-a	98.32
PRK10902	269	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	98.32
KOG2076	895	consensus RNA polymerase III transcription factor	98.32
PF12688	120	TPR_5: Tetratrico peptide repeat	98.27
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	98.26
KOG1129	478	consensus TPR repeat-containing protein [General f	98.25
PRK14574	822	hmsH outer membrane protein; Provisional	98.22
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.22
KOG2003	840	consensus TPR repeat-containing protein [General f	98.21
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.18
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.18
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.15
PRK01490	435	tig trigger factor; Provisional	98.15
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.13
KOG2076	895	consensus RNA polymerase III transcription factor	98.11
PRK14574	822	hmsH outer membrane protein; Provisional	98.09
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.08
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.08
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.08
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.08
PRK10803	263	tol-pal system protein YbgF; Provisional	98.07
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	98.03
PF13431	34	TPR_17: Tetratricopeptide repeat	98.03
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.03
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	98.02
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.01
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.0
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.99
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.98
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.98
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	97.98
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.95
PRK11906	458	transcriptional regulator; Provisional	97.94
KOG1125	579	consensus TPR repeat-containing protein [General f	97.91
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	97.88
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.87
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.87
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	97.85
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.83
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.83
PF13428	44	TPR_14: Tetratricopeptide repeat	97.83
COG0544	441	Tig FKBP-type peptidyl-prolyl cis-trans isomerase	97.82
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.81
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.78
KOG4234	271	consensus TPR repeat-containing protein [General f	97.76
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.76
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.76
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.75
KOG1129	478	consensus TPR repeat-containing protein [General f	97.75
PF13428	44	TPR_14: Tetratricopeptide repeat	97.73
PRK11906	458	transcriptional regulator; Provisional	97.72
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.71
PF12688	120	TPR_5: Tetratrico peptide repeat	97.7
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	97.7
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.66
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.64
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.62
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.62
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.6
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.57
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.57
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.56
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	97.55
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.55
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	97.51
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.5
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.49
PRK10941	269	hypothetical protein; Provisional	97.49
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.48
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.48
KOG4555	175	consensus TPR repeat-containing protein [Function	97.42
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.41
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.39
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.38
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.37
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.36
PF13512	142	TPR_18: Tetratricopeptide repeat	97.3
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.29
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.28
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.26
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.22
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	97.2
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.18
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.16
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.11
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.1
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.1
PRK15331	165	chaperone protein SicA; Provisional	97.07
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.01
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.01
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.0
KOG3364	149	consensus Membrane protein involved in organellar	96.96
KOG0495	913	consensus HAT repeat protein [RNA processing and m	96.96
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.88
KOG4814	872	consensus Uncharacterized conserved protein [Funct	96.88
PF13431	34	TPR_17: Tetratricopeptide repeat	96.87
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.85
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	96.68
KOG3785	557	consensus Uncharacterized conserved protein [Funct	96.68
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	96.67
KOG3785	557	consensus Uncharacterized conserved protein [Funct	96.62
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.62
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.61
KOG0549	188	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.58
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.57
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.54
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.49
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.42
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	96.41
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	96.4
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.35
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.34
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.33
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.32
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.32
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	96.23
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.22
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.19
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.18
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.04
KOG1586	288	consensus Protein required for fusion of vesicles	96.02
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.94
COG4105	254	ComL DNA uptake lipoprotein [General function pred	95.91
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	95.77
COG2912	269	Uncharacterized conserved protein [Function unknow	95.74
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.68
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	95.6
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	95.6
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.47
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.42
KOG0495	913	consensus HAT repeat protein [RNA processing and m	95.37
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	95.36
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	95.34
KOG4340	459	consensus Uncharacterized conserved protein [Funct	95.32
PRK04841	903	transcriptional regulator MalT; Provisional	95.27
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.27
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	95.2
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	95.0
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	94.95
PRK04841	903	transcriptional regulator MalT; Provisional	94.92
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	94.75
PRK15095	156	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	94.75
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	94.71
KOG2471	696	consensus TPR repeat-containing protein [General f	94.67
KOG2471	696	consensus TPR repeat-containing protein [General f	94.65
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	94.37
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	94.01
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	93.9
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.89
KOG1585	308	consensus Protein required for fusion of vesicles	93.78
KOG4507	886	consensus Uncharacterized conserved protein, conta	93.77
KOG2610	491	consensus Uncharacterized conserved protein [Funct	93.72
PLN03218	1060	maturation of RBCL 1; Provisional	93.68
PF03704	146	BTAD: Bacterial transcriptional activator domain;	93.45
COG4700	251	Uncharacterized protein conserved in bacteria cont	93.44
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	93.43
KOG1915	677	consensus Cell cycle control protein (crooked neck	93.35
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	93.29
PLN03077	857	Protein ECB2; Provisional	93.27
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	93.21
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	93.1
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	93.07
PF06957	422	COPI_C: Coatomer (COPI) alpha subunit C-terminus;	92.94
KOG1915	677	consensus Cell cycle control protein (crooked neck	92.89
COG3947	361	Response regulator containing CheY-like receiver a	92.7
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	92.63
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	92.63
KOG1586	288	consensus Protein required for fusion of vesicles	92.58
PLN03218	1060	maturation of RBCL 1; Provisional	92.48
KOG4814	872	consensus Uncharacterized conserved protein [Funct	92.28
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	92.04
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	92.03
COG3629	280	DnrI DNA-binding transcriptional activator of the	91.8
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	91.57
PRK10737	196	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	91.34
KOG1585	308	consensus Protein required for fusion of vesicles	91.21
PRK10941	269	hypothetical protein; Provisional	90.79
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	90.75
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	90.55
PLN03077	857	Protein ECB2; Provisional	90.55
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	90.15
PHA02537	230	M terminase endonuclease subunit; Provisional	90.11
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	90.07
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	89.86
KOG3364	149	consensus Membrane protein involved in organellar	89.85
COG4976	287	Predicted methyltransferase (contains TPR repeat)	89.82
KOG2796	366	consensus Uncharacterized conserved protein [Funct	89.61
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	89.45
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	88.94
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	88.77
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	88.37
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	88.35
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	88.12
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	87.89
KOG2422	665	consensus Uncharacterized conserved protein [Funct	87.84
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	87.83
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	87.82
COG1047	174	SlpA FKBP-type peptidyl-prolyl cis-trans isomerase	87.65
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	87.3
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	87.03
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	86.76
KOG2300	629	consensus Uncharacterized conserved protein [Funct	86.63
cd02684	75	MIT_2 MIT: domain contained within Microtubule Int	86.62
COG3898	531	Uncharacterized membrane-bound protein [Function u	86.59
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	86.42
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	85.79
COG5191	435	Uncharacterized conserved protein, contains HAT (H	85.68
cd02677	75	MIT_SNX15 MIT: domain contained within Microtubule	85.24
cd02656	75	MIT MIT: domain contained within Microtubule Inter	85.21
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	85.03
KOG1550	552	consensus Extracellular protein SEL-1 and related	85.0
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	84.09
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	83.66
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	83.1
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	82.85
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	82.16
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	82.09
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	81.52
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	81.4
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	80.96
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	80.82
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	80.53
smart00745	77	MIT Microtubule Interacting and Trafficking molecu	80.3
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	80.22
KOG1463	411	consensus 26S proteasome regulatory complex, subun	80.21
PF04212	69	MIT: MIT (microtubule interacting and transport) d	80.05

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.4e-61  Score=457.58  Aligned_cols=310  Identities=40%  Similarity=0.627  Sum_probs=286.4

Q ss_pred             CccccCCcCcEEEEEEcCCCcCCC-CCCCCCCCCCeeeEEEEeeEEEeeeeecCCCceEEEEeecccCCCCCCCCCCCCe
Q 015006            1 MGIGTMTREEKAVIYVTSQYLTPS-PLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSL   79 (414)
Q Consensus         1 ~~~~~m~~Ge~~~~~i~~~~~~g~-~~~~~ip~~~~l~~~vel~~~~~~~dv~~dg~~~k~i~~~G~g~~~~~~p~~~~~   79 (414)
                      +|+.||++              |+ +.||.||++++|.|+|+|+          ||+|+|+|+++|.|.  ..+|..|..
T Consensus        53 ~gv~tm~~--------------g~~~~pp~ip~~a~l~fe~el~----------Dg~iiKriir~G~gd--~~~P~~g~~  106 (397)
T KOG0543|consen   53 LGVATMKK--------------GEAGSPPKIPSNATLLFEVELL----------DGGIIKRIIREGEGD--YSRPNKGAV  106 (397)
T ss_pred             cccccccc--------------cccCCCCCCCCCcceeeeeccc----------CCceEEeeeecCCCC--CCCCCCCcE
Confidence            47777877              44 6789999999999999998          899999999999996  367899999


Q ss_pred             EEEEEEEEeecCCCceEeeeccCCCCCceEEEcCC-CCchHHHHHHhhhcCCCCeEEEEecCCCccc-cCCCCCCCCCCc
Q 015006           80 LCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGE-GLVPEGFEMCVRLMLPGEIALVTCPPDYAYD-KFLRPANVPEGA  157 (414)
Q Consensus        80 v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~-~~v~~gle~~l~~M~~GE~~~v~i~~~~~yg-~~~~~~~ip~~~  157 (414)
                      |+|||.|++.+  + +|+++..     .|+|.+|+ ..||.||+.||++|++||++.|+|+|+|+|| ..+.++.||||+
T Consensus       107 V~v~~~G~~~~--~-~f~~~~~-----~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~~p~IPPnA  178 (397)
T KOG0543|consen  107 VKVHLEGELED--G-VFDQREL-----RFEFGEGEDIDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGEPPLIPPNA  178 (397)
T ss_pred             EEEEEEEEECC--c-ceecccc-----ceEEecCCccchhHHHHHHHHhcCccceEEEEeCcccccCCCCCCCCCCCCCc
Confidence            99999999965  4 7755433     48999998 5799999999999999999999999999999 556679999999


Q ss_pred             ceEEEEEEcccC-CCCCCCCCchhhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhH
Q 015006          158 HIQWEIELLGFE-KPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNL  236 (414)
Q Consensus       158 ~l~~eieL~~~~-~~~~~~~~~~~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~  236 (414)
                      +|.|+|+|++|. .....|.|..+++++.|...|+.||.+|+.|+|..|+..|.+|+.++.+..+.++++.+....++..
T Consensus       179 ~l~yEVeL~~f~~~~~~s~~~~~~e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~  258 (397)
T KOG0543|consen  179 TLLYEVELLDFELKEDESWKMFAEERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLA  258 (397)
T ss_pred             eEEEEEEEEeeecCcccccccchHHHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHH
Confidence            999999999999 6777888888899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 015006          237 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  316 (414)
Q Consensus       237 ~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~  316 (414)
                      +|+|+|+||+|+++|..|+..|++||+++|+|+||+||+|+|++.+++|+.|+.+|++|++++|+| ++++.+|..|+++
T Consensus       259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N-ka~~~el~~l~~k  337 (397)
T KOG0543|consen  259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN-KAARAELIKLKQK  337 (397)
T ss_pred             HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999 7999999999999


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCccccccc
Q 015006          317 RQEVESKARKQFKGLFDKKPGEISEVGIE  345 (414)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (414)
                      .++++.+++++|++||.+......+....
T Consensus       338 ~~~~~~kekk~y~~mF~k~~~~~~k~~s~  366 (397)
T KOG0543|consen  338 IREYEEKEKKMYANMFAKLAEESAKTKSE  366 (397)
T ss_pred             HHHHHHHHHHHHHHHhhcccccccccccc
Confidence            99999999999999999987766555444

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.3e-37  Score=271.98  Aligned_cols=275  Identities=26%  Similarity=0.377  Sum_probs=241.0

Q ss_pred             CceEEEEeecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCCeE
Q 015006           55 GRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIA  134 (414)
Q Consensus        55 g~~~k~i~~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~  134 (414)
                      .+|.|+||..|.|..|..+  +|+.|++||.....++.+++++||+-  .|+|+++.+|.-+-.+.||.+|.+|+++|++
T Consensus        10 ~gv~Kril~~G~g~l~e~~--dGTrv~FHfrtl~~~e~~tviDDsRk--~gkPmeiiiGkkFkL~VwE~il~tM~v~Eva   85 (329)
T KOG0545|consen   10 EGVKKRILHGGTGELPEFI--DGTRVIFHFRTLKCDEERTVIDDSRK--VGKPMEIIIGKKFKLEVWEIILTTMRVHEVA   85 (329)
T ss_pred             hhhhHhhccCCCccCcccc--CCceEEEEEEecccCcccccccchhh--cCCCeEEeeccccccHHHHHHHHHHhhhhHH
Confidence            3789999999999988775  59999999999988888999988875  6999999999999999999999999999999


Q ss_pred             EEEecCCCc--ccc---------CCCCCC------------C--------------CCCcceEEEEEEcccCCCC----C
Q 015006          135 LVTCPPDYA--YDK---------FLRPAN------------V--------------PEGAHIQWEIELLGFEKPK----D  173 (414)
Q Consensus       135 ~v~i~~~~~--yg~---------~~~~~~------------i--------------p~~~~l~~eieL~~~~~~~----~  173 (414)
                      .|+|.-...  |.-         .|..|.            +              ..-.+|+|.++|+.++.|.    +
T Consensus        86 qF~~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~knPqpL~FviellqVe~P~qYq~e  165 (329)
T KOG0545|consen   86 QFWCDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQKNPQPLVFVIELLQVEAPSQYQRE  165 (329)
T ss_pred             HhhhhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhhCCCceEeehhhhhccCchhhccc
Confidence            999864321  210         011000            0              0115799999999998765    6


Q ss_pred             CCCCchhhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCC---CChHHHHHHhhhhhHHHHHHHHHHHHcCC
Q 015006          174 WTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNP---QDDEEGKVFVGKRNLLHLNVAACLLKLGE  250 (414)
Q Consensus       174 ~~~~~~~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p---~~~~e~~~~~~~~~~~~~N~a~~~~kl~~  250 (414)
                      .|.|+.++++..+..+.++||.+|+.|+|.+|..+|..|+..+.++..   ..+.++.++......+++|.|.|+++.++
T Consensus       166 ~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e  245 (329)
T KOG0545|consen  166 TWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEE  245 (329)
T ss_pred             cccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHH
Confidence            789999999999999999999999999999999999999988766521   23457888888889999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015006          251 CRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKG  330 (414)
Q Consensus       251 ~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~  330 (414)
                      |-+++++|+.+|..+|.|+|||||||+|+...-+..+|.++|.++|+++|.-.+.+.++|..+..++++.+...+..+++
T Consensus       246 ~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~ek~~edr~~~~k  325 (329)
T KOG0545|consen  246 YYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAEKQEEDRLRCRK  325 (329)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999988889999999999999999999999999


Q ss_pred             hcc
Q 015006          331 LFD  333 (414)
Q Consensus       331 ~~~  333 (414)
                      ||+
T Consensus       326 mfs  328 (329)
T KOG0545|consen  326 MFS  328 (329)
T ss_pred             hcC
Confidence            996

>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=8.7e-28  Score=203.45  Aligned_cols=161  Identities=22%  Similarity=0.304  Sum_probs=131.1

Q ss_pred             ccccCCcCcEEEEEEcCCCcCCCCCCCCCCCCCeeeEEEEeeEEEee---eeecCCCceEEEEeecccCCCCCCCCCCCC
Q 015006            2 GIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQV---RDMLGDGRLIKRRIRDGKGEFPMDCPLHDS   78 (414)
Q Consensus         2 ~~~~m~~Ge~~~~~i~~~~~~g~~~~~~ip~~~~l~~~vel~~~~~~---~dv~~dg~~~k~i~~~G~g~~~~~~p~~~~   78 (414)
                      |+.+|+.||+..+.|||+.+||.++...   -..+.|.+.++.....   +....+..+...+++.-..  .......||
T Consensus        15 ~~~g~c~ge~rkvv~pp~l~fg~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~l~I~v~~~p~~--C~~kak~GD   89 (188)
T KOG0549|consen   15 ALEGMCNGEKRKVVIPPHLGFGEGGRGD---LNILVITILLVLLFRASAAEKWNPDEELQIGVLKKPEE--CPEKAKKGD   89 (188)
T ss_pred             HhhhhhccccceeccCCccccccccccc---ccceEEEeeeeehhhhhhhhhcCCCCceeEEEEECCcc--ccccccCCC
Confidence            6789999999999999999999544322   1446677776665432   2223455666677776222  223346899


Q ss_pred             eEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCCeEEEEecCCCccccCCCCCCCCCCcc
Q 015006           79 LLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAH  158 (414)
Q Consensus        79 ~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~~ip~~~~  158 (414)
                      .|++||+|.+.|  |++| ||++. +++|++|+||.|+||+|||.+|.+|++||+..++|||+++||+.|.++.||++++
T Consensus        90 ~l~~HY~g~leD--Gt~f-dSS~~-rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp~LgYG~~G~~~~IP~~A~  165 (188)
T KOG0549|consen   90 TLHVHYTGSLED--GTKF-DSSYS-RGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPPHLGYGERGAPPKIPGDAV  165 (188)
T ss_pred             EEEEEEEEEecC--CCEE-eeecc-CCCCEEEEeCCCceeccHhHHhhhhCcccceEEecCccccCccCCCCCCCCCCee
Confidence            999999999976  9998 77776 7899999999999999999999999999999999999999999999988999999


Q ss_pred             eEEEEEEcccCCC
Q 015006          159 IQWEIELLGFEKP  171 (414)
Q Consensus       159 l~~eieL~~~~~~  171 (414)
                      |+|+|||+.+...
T Consensus       166 LiFdiELv~i~~~  178 (188)
T KOG0549|consen  166 LIFDIELVKIERG  178 (188)
T ss_pred             EEEEEEEEEeecC
Confidence            9999999998764

>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=9.8e-27  Score=173.93  Aligned_cols=106  Identities=36%  Similarity=0.607  Sum_probs=98.6

Q ss_pred             ceEEEEeecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCCeEE
Q 015006           56 RLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIAL  135 (414)
Q Consensus        56 ~~~k~i~~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~~  135 (414)
                      ++-+.+|+.|.|.   ..|..|++|++||+|++.|  |+.| ||+.| +++||.|.+|.|+||.|||.++..|.+||++.
T Consensus         2 Gv~~~~i~~Gdg~---tfpK~Gqtvt~hYtg~L~d--G~kf-DSs~d-r~kPfkf~IGkgeVIkGwdegv~qmsvGekak   74 (108)
T KOG0544|consen    2 GVEKQVISPGDGR---TFPKKGQTVTVHYTGTLQD--GKKF-DSSRD-RGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAK   74 (108)
T ss_pred             CceeEEeeCCCCc---ccCCCCCEEEEEEEeEecC--CcEe-ecccc-cCCCeeEEecCcceeechhhcchhccccccce
Confidence            3678999999995   3468999999999999987  9998 78887 78999999999999999999999999999999


Q ss_pred             EEecCCCccccCCCCCCCCCCcceEEEEEEccc
Q 015006          136 VTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF  168 (414)
Q Consensus       136 v~i~~~~~yg~~~~~~~ip~~~~l~~eieL~~~  168 (414)
                      ++|+|+||||..|.+..||||++|+|+|||+++
T Consensus        75 Lti~pd~aYG~~G~p~~IppNatL~FdVEll~v  107 (108)
T KOG0544|consen   75 LTISPDYAYGPRGHPGGIPPNATLVFDVELLKV  107 (108)
T ss_pred             eeeccccccCCCCCCCccCCCcEEEEEEEEEec
Confidence            999999999999999999999999999999976

>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=2.7e-23  Score=180.36  Aligned_cols=105  Identities=32%  Similarity=0.552  Sum_probs=97.4

Q ss_pred             CCceEEEEeecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCCe
Q 015006           54 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI  133 (414)
Q Consensus        54 dg~~~k~i~~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~  133 (414)
                      .++|..++++.|.|..|    ..+++|+|||+|+|.|  |++| |++++ +++|+.|.||  .||+||+.+|..|++|++
T Consensus       100 ~sgl~y~~~~~G~G~~~----~~~~~V~vhY~G~l~~--G~vF-DsS~~-rg~p~~f~l~--~vI~Gw~egl~~M~vG~k  169 (205)
T COG0545         100 PSGLQYKVLKAGDGAAP----KKGDTVTVHYTGTLID--GTVF-DSSYD-RGQPAEFPLG--GVIPGWDEGLQGMKVGGK  169 (205)
T ss_pred             CCCcEEEEEeccCCCCC----CCCCEEEEEEEEecCC--CCcc-ccccc-cCCCceeecC--CeeehHHHHHhhCCCCce
Confidence            46788999999999755    6899999999999987  9998 78877 7999999999  799999999999999999


Q ss_pred             EEEEecCCCccccCCCCCCCCCCcceEEEEEEccc
Q 015006          134 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF  168 (414)
Q Consensus       134 ~~v~i~~~~~yg~~~~~~~ip~~~~l~~eieL~~~  168 (414)
                      +.++|||++|||..|.+..||||++|+|+|+|+++
T Consensus       170 ~~l~IP~~laYG~~g~~g~Ippns~LvFeVeLl~v  204 (205)
T COG0545         170 RKLTIPPELAYGERGVPGVIPPNSTLVFEVELLDV  204 (205)
T ss_pred             EEEEeCchhccCcCCCCCCCCCCCeEEEEEEEEec
Confidence            99999999999999988779999999999999976

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.87  E-value=6.6e-22  Score=181.20  Aligned_cols=125  Identities=27%  Similarity=0.471  Sum_probs=119.1

Q ss_pred             hhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015006          181 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK  260 (414)
Q Consensus       181 e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~  260 (414)
                      +-..+|+.+|.+||.+++.++|.+|+.+|++||.    ++|.+           +.+|+|+|++|.++|.|..|+++|..
T Consensus        76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~----l~P~n-----------AVyycNRAAAy~~Lg~~~~AVkDce~  140 (304)
T KOG0553|consen   76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIE----LDPTN-----------AVYYCNRAAAYSKLGEYEDAVKDCES  140 (304)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh----cCCCc-----------chHHHHHHHHHHHhcchHHHHHHHHH
Confidence            6677899999999999999999999999999999    88888           88999999999999999999999999


Q ss_pred             HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 015006          261 VLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVE  321 (414)
Q Consensus       261 al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~  321 (414)
                      ||.+||.+.|||-|+|.||+.+|+|++|++.|++||+++|+| ...+..|..+++++.+..
T Consensus       141 Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~N-e~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  141 ALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDN-ESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCc-HHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999999999999999999999999 689999999988877654

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.85  E-value=1.6e-20  Score=161.96  Aligned_cols=137  Identities=32%  Similarity=0.548  Sum_probs=122.6

Q ss_pred             hhhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHH
Q 015006          179 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEAC  258 (414)
Q Consensus       179 ~~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~  258 (414)
                      .+..+..+..+|..||.+|+.|+|.+|...|..||..|+.+.          .+.+..||+|+|+|++|++.|+.|+.+|
T Consensus        88 k~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~----------~e~rsIly~Nraaa~iKl~k~e~aI~dc  157 (271)
T KOG4234|consen   88 KDKAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS----------TEERSILYSNRAAALIKLRKWESAIEDC  157 (271)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc----------HHHHHHHHhhhHHHHHHhhhHHHHHHHH
Confidence            344577899999999999999999999999999999654322          3567889999999999999999999999


Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 015006          259 NKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARK  326 (414)
Q Consensus       259 ~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~~~~  326 (414)
                      .+||+++|.+.||+.|||.+|.++..|++|+++|++.++++|.+ ..++..+.++..++.+.+++.+.
T Consensus       158 sKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~-~ear~~i~rl~~~i~ernEkmKe  224 (271)
T KOG4234|consen  158 SKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSR-REAREAIARLPPKINERNEKMKE  224 (271)
T ss_pred             HhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcch-HHHHHHHHhcCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999997 68998998888888777666544

>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.79  E-value=7e-19  Score=158.02  Aligned_cols=105  Identities=31%  Similarity=0.492  Sum_probs=95.0

Q ss_pred             CCceEEEEeecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCCe
Q 015006           54 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI  133 (414)
Q Consensus        54 dg~~~k~i~~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~  133 (414)
                      ..++.++|+++|.|..    |..++.|+|||+|++.|  |++| ++++. ++.|++|.+|  .+++||+.+|.+|++|++
T Consensus       101 ~sGl~y~vi~~G~G~~----p~~~d~V~v~Y~g~l~d--G~vf-dss~~-~g~P~~f~l~--~vipG~~eaL~~M~~G~k  170 (206)
T PRK11570        101 ESGLQFRVLTQGEGAI----PARTDRVRVHYTGKLID--GTVF-DSSVA-RGEPAEFPVN--GVIPGWIEALTLMPVGSK  170 (206)
T ss_pred             CCCcEEEEEeCCCCCC----CCCCCEEEEEEEEEECC--CCEE-EeccC-CCCCeEEEee--chhhHHHHHHcCCCCCCE
Confidence            4578899999999975    46899999999999975  9998 66665 6789999996  599999999999999999


Q ss_pred             EEEEecCCCccccCCCCCCCCCCcceEEEEEEccc
Q 015006          134 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF  168 (414)
Q Consensus       134 ~~v~i~~~~~yg~~~~~~~ip~~~~l~~eieL~~~  168 (414)
                      +.|.|||+++||..+.++.|||+++|+|+|+|++|
T Consensus       171 ~~~~IP~~lAYG~~g~~~~Ipp~s~Lif~veLl~i  205 (206)
T PRK11570        171 WELTIPHELAYGERGAGASIPPFSTLVFEVELLEI  205 (206)
T ss_pred             EEEEECHHHcCCCCCCCCCcCCCCeEEEEEEEEEE
Confidence            99999999999999988899999999999999976

>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated

Probab=99.78  E-value=1.9e-18  Score=151.60  Aligned_cols=110  Identities=19%  Similarity=0.249  Sum_probs=93.5

Q ss_pred             CCCceEEEEeecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCC
Q 015006           53 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGE  132 (414)
Q Consensus        53 ~dg~~~k~i~~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE  132 (414)
                      ...++...++..+.|..  ..|..|+.|++||.+++.+  |++|+++.   +..|++|.+|.+.+++||+.+|.+|++||
T Consensus        67 t~sGl~Y~v~~~~~g~g--~~p~~gd~V~v~Y~~~~~d--G~v~~ss~---~~~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge  139 (177)
T TIGR03516        67 SQNGFWYYYNQKDTGEG--TTPEFGDLVTFEYDIRALD--GDVIYSEE---ELGPQTYKVDQQDLFSGLRDGLKLMKEGE  139 (177)
T ss_pred             CCCccEEEEEEecCCCC--CcCCCCCEEEEEEEEEeCC--CCEEEeCC---CCCCEEEEeCCcchhHHHHHHHcCCCCCC
Confidence            34567777776644431  2357899999999999976  99985543   34599999999999999999999999999


Q ss_pred             eEEEEecCCCccccCCCCCCCCCCcceEEEEEEcccC
Q 015006          133 IALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE  169 (414)
Q Consensus       133 ~~~v~i~~~~~yg~~~~~~~ip~~~~l~~eieL~~~~  169 (414)
                      ++.|.+||++|||..+.+..||+|++|+|+|+|+++.
T Consensus       140 ~~~~~iP~~~AYG~~g~~~~Ippns~L~f~IeL~~i~  176 (177)
T TIGR03516       140 TATFLFPSHKAYGYYGDQNKIGPNLPIISTVTLLNIK  176 (177)
T ss_pred             EEEEEECHHHcCCCCCCCCCcCcCCcEEEEEEEEEec
Confidence            9999999999999999888899999999999999874

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.

>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=1.7e-18  Score=154.38  Aligned_cols=108  Identities=31%  Similarity=0.504  Sum_probs=96.9

Q ss_pred             cCCCceEEEEeecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceE-EEcCCCCchHHHHHHhhhcCC
Q 015006           52 LGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE-FSSGEGLVPEGFEMCVRLMLP  130 (414)
Q Consensus        52 ~~dg~~~k~i~~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~-f~lG~~~v~~gle~~l~~M~~  130 (414)
                      +-.|+|+.+-++.|.|..+    ..|+.|.|||.|++.. +|.+| |+++  .++|+. |++|.+.||+||+.+|.+|++
T Consensus       117 tl~~Gl~y~D~~vG~G~~a----~~G~rV~v~Y~Gkl~~-~GkvF-d~~~--~~kp~~~f~lg~g~VIkG~d~gv~GMkv  188 (226)
T KOG0552|consen  117 TLPGGLRYEDLRVGSGPSA----KKGKRVSVRYIGKLKG-NGKVF-DSNF--GGKPFKLFRLGSGEVIKGWDVGVEGMKV  188 (226)
T ss_pred             ecCCCcEEEEEEecCCCCC----CCCCEEEEEEEEEecC-CCeEe-eccc--CCCCccccccCCCCCCchHHHhhhhhcc
Confidence            3356788888899999765    5899999999999985 59998 5555  578999 999999999999999999999


Q ss_pred             CCeEEEEecCCCccccCCCCCCCCCCcceEEEEEEccc
Q 015006          131 GEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF  168 (414)
Q Consensus       131 GE~~~v~i~~~~~yg~~~~~~~ip~~~~l~~eieL~~~  168 (414)
                      |.+.+|+|||.+|||..+.+ .||||++|+|+|+|+.+
T Consensus       189 GGkRrviIPp~lgYg~~g~~-~IppnstL~fdVEL~~v  225 (226)
T KOG0552|consen  189 GGKRRVIIPPELGYGKKGVP-EIPPNSTLVFDVELLSV  225 (226)
T ss_pred             CCeeEEEeCccccccccCcC-cCCCCCcEEEEEEEEec
Confidence            99999999999999999987 89999999999999875

>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5

Probab=99.73  E-value=2.6e-17  Score=130.25  Aligned_cols=90  Identities=36%  Similarity=0.605  Sum_probs=81.0

Q ss_pred             CCCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCCeEEEEecCCCccccCCC-CC
Q 015006           73 CPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLR-PA  151 (414)
Q Consensus        73 ~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~-~~  151 (414)
                      .|..||.|+|||++++.+  |++| ++++. .+.|++|.+|.+.+++||+.+|.+|++||++.|.+|++++||..+. ..
T Consensus         4 ~~~~gd~V~i~y~~~~~~--g~~~-~~~~~-~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~~   79 (94)
T PF00254_consen    4 TPKEGDTVTIHYTGRLED--GKVF-DSSYQ-EGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEPP   79 (94)
T ss_dssp             SBSTTSEEEEEEEEEETT--SEEE-EETTT-TTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCTT
T ss_pred             cCCCCCEEEEEEEEEECC--CcEE-EEeee-cCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCCC
Confidence            467999999999999864  8888 45543 5789999999999999999999999999999999999999999887 45


Q ss_pred             CCCCCcceEEEEEEc
Q 015006          152 NVPEGAHIQWEIELL  166 (414)
Q Consensus       152 ~ip~~~~l~~eieL~  166 (414)
                      .||++++|+|+|+|+
T Consensus        80 ~ip~~~~l~f~Iell   94 (94)
T PF00254_consen   80 KIPPNSTLVFEIELL   94 (94)
T ss_dssp             TBTTTSEEEEEEEEE
T ss_pred             CcCCCCeEEEEEEEC
Confidence            799999999999985

2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.73  E-value=1.3e-17  Score=154.59  Aligned_cols=121  Identities=26%  Similarity=0.432  Sum_probs=111.8

Q ss_pred             hhhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHH
Q 015006          179 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEAC  258 (414)
Q Consensus       179 ~~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~  258 (414)
                      .++.+..+..+|++||.||++|+|.+|+.||.+++.    +.|.+           ..+|.|+|.+|++++.|..|..+|
T Consensus        90 ~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia----~~P~N-----------pV~~~NRA~AYlk~K~FA~AE~DC  154 (536)
T KOG4648|consen   90 AQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIA----VYPHN-----------PVYHINRALAYLKQKSFAQAEEDC  154 (536)
T ss_pred             HHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhc----cCCCC-----------ccchhhHHHHHHHHHHHHHHHHhH
Confidence            467788899999999999999999999999999999    67766           679999999999999999999999


Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 015006          259 NKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  315 (414)
Q Consensus       259 ~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~  315 (414)
                      +.|+.+|...+|||.|||.|...+|+..+|.++|+.+|+|+|++ .+++..++.+..
T Consensus       155 ~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~-~ELkK~~a~i~S  210 (536)
T KOG4648|consen  155 EAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKN-IELKKSLARINS  210 (536)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCccc-HHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999997 567777666654

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=3.4e-17  Score=160.04  Aligned_cols=116  Identities=29%  Similarity=0.543  Sum_probs=108.5

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +...+..||++|+.|+|..|+..|++||.    .+|.+           ..+|+|||+||++++.+..|+.+|+++++++
T Consensus       358 A~e~r~kGne~Fk~gdy~~Av~~YteAIk----r~P~D-----------a~lYsNRAac~~kL~~~~~aL~Da~~~ieL~  422 (539)
T KOG0548|consen  358 AEEEREKGNEAFKKGDYPEAVKHYTEAIK----RDPED-----------ARLYSNRAACYLKLGEYPEALKDAKKCIELD  422 (539)
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHh----cCCch-----------hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            77889999999999999999999999999    78888           8899999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 015006          266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  317 (414)
Q Consensus       266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~  317 (414)
                      |++.|+|+|.|.|+..+.+|+.|++.|+++++++|++ .++...+.+|...+
T Consensus       423 p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~-~e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  423 PNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSN-AEAIDGYRRCVEAQ  473 (539)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh-HHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999997 66777777776544

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=8.9e-17  Score=155.11  Aligned_cols=109  Identities=31%  Similarity=0.536  Sum_probs=100.5

Q ss_pred             CCCchhhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHH
Q 015006          175 TGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKS  254 (414)
Q Consensus       175 ~~~~~~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A  254 (414)
                      ..++.+++++.|..+|.+||.+|+.|+|.+||++|+.||.    +.|+.           ...|.|||+||..+|+|++.
T Consensus       104 ~a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~----l~p~e-----------piFYsNraAcY~~lgd~~~V  168 (606)
T KOG0547|consen  104 KAMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIE----LCPDE-----------PIFYSNRAACYESLGDWEKV  168 (606)
T ss_pred             hccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHh----cCCCC-----------chhhhhHHHHHHHHhhHHHH
Confidence            4578899999999999999999999999999999999999    55554           57899999999999999999


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006          255 IEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  298 (414)
Q Consensus       255 ~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l  298 (414)
                      +++|++||+++|+++|||+||+.||-.+|++.+|+.++.-..-+
T Consensus       169 ied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~  212 (606)
T KOG0547|consen  169 IEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCIL  212 (606)
T ss_pred             HHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHh
Confidence            99999999999999999999999999999999999998754433

>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.71  E-value=1.2e-16  Score=148.69  Aligned_cols=108  Identities=28%  Similarity=0.509  Sum_probs=95.1

Q ss_pred             CCCceEEEEeecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCC
Q 015006           53 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGE  132 (414)
Q Consensus        53 ~dg~~~k~i~~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE  132 (414)
                      .+.++.++|+++|+|..    |..||.|+|||.|++.|  |++| ++++. ++.|++|.+|  .+++||+.+|.+|++|+
T Consensus       144 t~sGl~y~Vi~~G~G~~----p~~gD~V~V~Y~g~l~d--G~vf-dss~~-~g~p~~f~l~--~vipG~~EaL~~Mk~Ge  213 (269)
T PRK10902        144 TSTGLLYKVEKEGTGEA----PKDSDTVVVNYKGTLID--GKEF-DNSYT-RGEPLSFRLD--GVIPGWTEGLKNIKKGG  213 (269)
T ss_pred             CCCccEEEEEeCCCCCC----CCCCCEEEEEEEEEeCC--CCEe-ecccc-CCCceEEecC--CcchHHHHHHhcCCCCc
Confidence            35578999999999975    46899999999999865  9998 55554 5789999986  59999999999999999


Q ss_pred             eEEEEecCCCccccCCCCCCCCCCcceEEEEEEcccCCC
Q 015006          133 IALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKP  171 (414)
Q Consensus       133 ~~~v~i~~~~~yg~~~~~~~ip~~~~l~~eieL~~~~~~  171 (414)
                      ++.|.||++++||..+.+ .||+|++|+|+|+|+++...
T Consensus       214 k~~l~IP~~laYG~~g~~-gIppns~LvfeVeLl~V~~~  251 (269)
T PRK10902        214 KIKLVIPPELAYGKAGVP-GIPANSTLVFDVELLDVKPA  251 (269)
T ss_pred             EEEEEECchhhCCCCCCC-CCCCCCcEEEEEEEEEeccC
Confidence            999999999999999865 79999999999999998654

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=1.7e-16  Score=146.82  Aligned_cols=107  Identities=29%  Similarity=0.436  Sum_probs=99.3

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      .|..+|+.||.+|+.++|..|+.+|+++|.    ..+.+       .++.+.+|+|||+|++-+|+|..|+.+|.+|+.+
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk----~kc~D-------~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~  148 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLK----KKCAD-------PDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL  148 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHh----hcCCC-------ccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            799999999999999999999999999999    56666       4567899999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          265 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       265 dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      +|.+.||+||-|+|++.|.+|.+|..+++..+.++-++
T Consensus       149 ~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~  186 (390)
T KOG0551|consen  149 KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEA  186 (390)
T ss_pred             CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence            99999999999999999999999999998888776443

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=1.3e-15  Score=145.43  Aligned_cols=219  Identities=22%  Similarity=0.351  Sum_probs=142.0

Q ss_pred             ecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCCeEEEEecCCC
Q 015006           63 RDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDY  142 (414)
Q Consensus        63 ~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~~v~i~~~~  142 (414)
                      ++|.|+   ..|..|+.|.+||+|++.|  |+.| |++.+  +.|+.|.+|.|.++.||+.++.+|+.            
T Consensus         1 ~eg~g~---~~p~~g~~v~~hytg~l~d--gt~f-dss~d--~~~~~~~lg~g~vi~~~~~gv~tm~~------------   60 (397)
T KOG0543|consen    1 KEGTGT---ETPMTGDKVEVHYTGTLLD--GTKF-DSSRD--GDPFKFDLGKGSVIKGWDLGVATMKK------------   60 (397)
T ss_pred             CCCCCc---cCCCCCceeEEEEeEEecC--Ceec-ccccC--CCceeeecCCCccccccccccccccc------------
Confidence            468886   3467999999999999987  9998 66654  88999999999999999999999998            


Q ss_pred             ccccCCCCCCCCCCcceEEEEEEcc------cCCCCCC-CCCchhhh---------hHHHHHHHhhhccccccccHHHHH
Q 015006          143 AYDKFLRPANVPEGAHIQWEIELLG------FEKPKDW-TGLSFDGI---------MDEAEKIRVTGNRLFKEGKFELAK  206 (414)
Q Consensus       143 ~yg~~~~~~~ip~~~~l~~eieL~~------~~~~~~~-~~~~~~e~---------~~~a~~~k~~Gn~~fk~g~y~~A~  206 (414)
                        |..+.+|.||++++|.|+|+|.+      +....+. ...+.+..         +.--.-....=+..|..|+-..-+
T Consensus        61 --g~~~~pp~ip~~a~l~fe~el~Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~~f~~~~~~fe~~~Ge~~~vi  138 (397)
T KOG0543|consen   61 --GEAGSPPKIPSNATLLFEVELLDGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDGVFDQRELRFEFGEGEDIDVI  138 (397)
T ss_pred             --cccCCCCCCCCCcceeeeecccCCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCcceeccccceEEecCCccchh
Confidence              66677889999999999999843      1111111 00000000         000000001111344555411122


Q ss_pred             HHHHHHHhhc-----------------------ccCCCCC---------------hHHHHHHhh---hhhHHHHHHHHHH
Q 015006          207 AKYEKVLRDF-----------------------NHVNPQD---------------DEEGKVFVG---KRNLLHLNVAACL  245 (414)
Q Consensus       207 ~~Y~~al~~~-----------------------~~~~p~~---------------~~e~~~~~~---~~~~~~~N~a~~~  245 (414)
                      .-...|+..+                       ..+.|..               .+.+.....   -.+...--.|..|
T Consensus       139 ~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f~~~~~~s~~~~~~e~l~~A~~~ke~Gn~~  218 (397)
T KOG0543|consen  139 EGLEIALRMMKVGEVALVTIDPKYAYGEEGGEPPLIPPNATLLYEVELLDFELKEDESWKMFAEERLEAADRKKERGNVL  218 (397)
T ss_pred             HHHHHHHHhcCccceEEEEeCcccccCCCCCCCCCCCCCceEEEEEEEEeeecCcccccccchHHHHHHHHHHHHhhhHH
Confidence            2222222211                       1111111               011111111   0122344578899


Q ss_pred             HHcCCHHHHHHHHHHHHHhCC---------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 015006          246 LKLGECRKSIEACNKVLDANP---------------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  303 (414)
Q Consensus       246 ~kl~~~~~A~~~~~~al~~dp---------------~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~  303 (414)
                      +|.++|..|...|.+|+..-.               .-..++.++|.|+.++++|.+|+..+.++|.++|+|.
T Consensus       219 fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~  291 (397)
T KOG0543|consen  219 FKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNV  291 (397)
T ss_pred             HhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCch
Confidence            999999999999999875432               1267899999999999999999999999999999984

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=3.6e-16  Score=148.30  Aligned_cols=128  Identities=27%  Similarity=0.420  Sum_probs=114.5

Q ss_pred             hhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015006          181 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK  260 (414)
Q Consensus       181 e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~  260 (414)
                      -..+..+.+++.||.+|+.|+|..|.++|+.||.    ++|.+       .+..+.||.|+|.+..++|+..+|+.+|+.
T Consensus       244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~----idP~n-------~~~naklY~nra~v~~rLgrl~eaisdc~~  312 (486)
T KOG0550|consen  244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN----IDPSN-------KKTNAKLYGNRALVNIRLGRLREAISDCNE  312 (486)
T ss_pred             hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc----CCccc-------cchhHHHHHHhHhhhcccCCchhhhhhhhh
Confidence            3455788899999999999999999999999999    78887       456688999999999999999999999999


Q ss_pred             HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 015006          261 VLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVE  321 (414)
Q Consensus       261 al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~  321 (414)
                      |+.+||...|||.|+|+||+.+++|++|+++|++|+++..+  ..+++.|..++..++..+
T Consensus       313 Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s--~e~r~~l~~A~~aLkkSk  371 (486)
T KOG0550|consen  313 ALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD--CEIRRTLREAQLALKKSK  371 (486)
T ss_pred             hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--cchHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999876  457777777766665444

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=9.5e-16  Score=149.97  Aligned_cols=113  Identities=27%  Similarity=0.456  Sum_probs=107.2

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +..+++.||.+|..|+|..|+.+|+.||.    +.|.+           ..+|+|+++||.++++|.+|+.+..+.++++
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~----l~p~n-----------hvlySnrsaa~a~~~~~~~al~da~k~~~l~   66 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAIM----LSPTN-----------HVLYSNRSAAYASLGSYEKALKDATKTRRLN   66 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHHc----cCCCc-----------cchhcchHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            56789999999999999999999999999    78877           7899999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                      |.++|+|.|+|.|+..+|+|++|+..|.+.|+.+|+| +.+...|..+.
T Consensus        67 p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n-~~L~~gl~~a~  114 (539)
T KOG0548|consen   67 PDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSN-KQLKTGLAQAY  114 (539)
T ss_pred             CchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCch-HHHHHhHHHhh
Confidence            9999999999999999999999999999999999998 67887777776

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.60  E-value=2e-14  Score=151.78  Aligned_cols=136  Identities=26%  Similarity=0.389  Sum_probs=118.8

Q ss_pred             CCCCCcceEEEEEEcccCCCCCCCCCchhhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHh
Q 015006          152 NVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFV  231 (414)
Q Consensus       152 ~ip~~~~l~~eieL~~~~~~~~~~~~~~~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~  231 (414)
                      .+|++..+.+.+++..+.. ...+.++.+++...+..+++.||.+|+.|+|..|+..|+++|.    +.|.         
T Consensus        94 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~----~~p~---------  159 (615)
T TIGR00990        94 TAPKNAPVEPADELPEIDE-SSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIE----CKPD---------  159 (615)
T ss_pred             CCCCCCCCCccccccccch-hhcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCc---------
Confidence            4566666666666655444 4567899999999999999999999999999999999999999    5553         


Q ss_pred             hhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 015006          232 GKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP  304 (414)
Q Consensus       232 ~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~  304 (414)
                         ..+|+|+|.||+++++|++|+.+|.+||+++|+++++++++|.+|..+|+|++|+.+|..++.+++.+..
T Consensus       160 ---~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~  229 (615)
T TIGR00990       160 ---PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNE  229 (615)
T ss_pred             ---hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccH
Confidence               2479999999999999999999999999999999999999999999999999999999999888876533

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.60  E-value=1.2e-14  Score=142.70  Aligned_cols=119  Identities=22%  Similarity=0.377  Sum_probs=110.0

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +..++..|+.+|..|+|..|+..|.+||.    +.|.+           ..+|+|+|.||+++|+|.+|+.++.+||.++
T Consensus         2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~----~~P~~-----------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~   66 (356)
T PLN03088          2 AKDLEDKAKEAFVDDDFALAVDLYTQAID----LDPNN-----------AELYADRAQANIKLGNFTEAVADANKAIELD   66 (356)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            45678899999999999999999999999    77777           6799999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 015006          266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEV  320 (414)
Q Consensus       266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~  320 (414)
                      |.++.+|+++|.+|+.+|+|++|+..|++|++++|++ ..+...+..|..++...
T Consensus        67 P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~-~~~~~~l~~~~~kl~~~  120 (356)
T PLN03088         67 PSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGD-SRFTKLIKECDEKIAEE  120 (356)
T ss_pred             cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999998 67888888887777543

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=6.1e-15  Score=138.04  Aligned_cols=243  Identities=25%  Similarity=0.363  Sum_probs=174.2

Q ss_pred             EEEEEEEEeecCCCceEeeeccCC---CCCceEEEcCCCCchHHHHHH--hhhcCCCCe----EEEEec--CCCccccC-
Q 015006           80 LCVHYKGMLLNEEKKVFYDTRVDN---DGQPLEFSSGEGLVPEGFEMC--VRLMLPGEI----ALVTCP--PDYAYDKF-  147 (414)
Q Consensus        80 v~v~y~g~~~~~~g~~~~~s~~~~---~~~p~~f~lG~~~v~~gle~~--l~~M~~GE~----~~v~i~--~~~~yg~~-  147 (414)
                      +.+.-.|  +|++|+.||-|+...   +|+.++|    |+||.|++.+  |...+..+.    +-|.|.  .++.-+.. 
T Consensus       111 LSMAN~G--pNTNgSQFFITT~p~PHLdGkHVVF----GqVI~G~~VVr~IEn~~~d~~skP~~dV~I~dCGel~~~~~~  184 (372)
T KOG0546|consen  111 LSMANRG--PNTNGSQFFITTVPTPHLDGKHVVF----GQVIKGKEVVREIENLETDEESKPLADVVISDCGELVKKSKV  184 (372)
T ss_pred             hhhhcCC--CCCCCcceEEeCCCCCCcCCceeEE----eeEeechhHHHHHhccccccCCCCccceEecccccccccccc
Confidence            3444455  467799999998653   6677777    4677666543  333334333    222221  12211100 


Q ss_pred             --CCCCCCCCCcceEEEEEEcccCC-CCCCCCCchhhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCCh
Q 015006          148 --LRPANVPEGAHIQWEIELLGFEK-PKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDD  224 (414)
Q Consensus       148 --~~~~~ip~~~~l~~eieL~~~~~-~~~~~~~~~~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~  224 (414)
                        .....-+.+..-.++    ++.. ...|...+....+..++..++.||..|+.++|..|...|.++++++......+.
T Consensus       185 ~~~~~a~~~~~sgd~~~----d~p~~~~~~~~~~~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~  260 (372)
T KOG0546|consen  185 KEDAGASEPDETGDSYE----DYPKDDRSWDDKDFDKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDRE  260 (372)
T ss_pred             cccccCCCCCCCCCccc----ccccccccccccccchhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccc
Confidence              000000111111111    1111 122334456777888999999999999999999999999999998875222222


Q ss_pred             HH----HHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 015006          225 EE----GKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK  300 (414)
Q Consensus       225 ~e----~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P  300 (414)
                      .+    ...+..++..++.|++.|-++++.|..|+..|..+++.+++..+||||++++++.+.++++|+++++.|....|
T Consensus       261 ~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p  340 (372)
T KOG0546|consen  261 KEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAP  340 (372)
T ss_pred             cccccccccccccccccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCc
Confidence            11    13356777889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015006          301 SSEPDATAALSKLKKQRQEVESKARKQFKGLFD  333 (414)
Q Consensus       301 ~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  333 (414)
                      ++ ..+...+..+.++...++.++++.+.+||+
T Consensus       341 ~d-~~i~~~~~~~~~~~~~~~~~~~~~~~k~~s  372 (372)
T KOG0546|consen  341 ND-KAIEEELENVRQKKKQYNRKQKKALSKMFS  372 (372)
T ss_pred             ch-HHHHHHHHHhhhHHHHHHHHHHHHHHhhcC
Confidence            97 789999999999999999999999998874

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.51  E-value=4e-13  Score=114.88  Aligned_cols=113  Identities=17%  Similarity=0.273  Sum_probs=102.5

Q ss_pred             HHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 015006          189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  268 (414)
Q Consensus       189 ~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~  268 (414)
                      +...|..++..|+|.+|+..|.+++.    ..|.+           ..++.++|.++.++|+|++|+..+.+++.++|++
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~----~~P~~-----------~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~   91 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVM----AQPWS-----------WRAHIALAGTWMMLKEYTTAINFYGHALMLDASH   91 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCc-----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            45678999999999999999999999    78877           7799999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 015006          269 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  317 (414)
Q Consensus       269 ~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~  317 (414)
                      +.+++++|.++..+|++++|+..|.+|+++.|++ ......+..++..+
T Consensus        92 ~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~-~~~~~~~~~~~~~l  139 (144)
T PRK15359         92 PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYAD-ASWSEIRQNAQIMV  139 (144)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998 56666665554443

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=2e-13  Score=121.33  Aligned_cols=118  Identities=26%  Similarity=0.365  Sum_probs=105.4

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      .+.++++.||.+|..+.|..|+.+|.+||.    ++|..           ++.|.|+|.||+++++|+.+..+|.+|+++
T Consensus         9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~----~nP~~-----------~~Y~tnralchlk~~~~~~v~~dcrralql   73 (284)
T KOG4642|consen    9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAIC----INPTV-----------ASYYTNRALCHLKLKHWEPVEEDCRRALQL   73 (284)
T ss_pred             HHHHHHhccccccchhhhchHHHHHHHHHh----cCCCc-----------chhhhhHHHHHHHhhhhhhhhhhHHHHHhc
Confidence            589999999999999999999999999999    77766           789999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCCHHHHHHHHHHHHHHH
Q 015006          265 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD----KSSEPDATAALSKLKKQR  317 (414)
Q Consensus       265 dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~----P~n~~~~~~~l~~~~~~~  317 (414)
                      +|+.+|++|-+|++++....|++|+..+++|+.+-    +++..++-.+|..++.+.
T Consensus        74 ~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~  130 (284)
T KOG4642|consen   74 DPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKR  130 (284)
T ss_pred             ChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCc
Confidence            99999999999999999999999999999997662    223346777777776543

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=99.46  E-value=9.2e-14  Score=135.18  Aligned_cols=121  Identities=30%  Similarity=0.460  Sum_probs=113.5

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      .|+.++.++|.+|+.+.|..|+..|.+||+    ++|..           +..+.|+|.+++|.++|..|+.++.+|+++
T Consensus         3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~----ldpnc-----------a~~~anRa~a~lK~e~~~~Al~Da~kaie~   67 (476)
T KOG0376|consen    3 SAEELKNEANEALKDKVFDVAVDLYSKAIE----LDPNC-----------AIYFANRALAHLKVESFGGALHDALKAIEL   67 (476)
T ss_pred             hhhhhhhHHhhhcccchHHHHHHHHHHHHh----cCCcc-----------eeeechhhhhheeechhhhHHHHHHhhhhc
Confidence            478899999999999999999999999999    77776           778999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 015006          265 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVE  321 (414)
Q Consensus       265 dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~  321 (414)
                      +|...|||+|+|.+++.+++|.+|+.+|++...+.|+. +.+++.+..|.....+++
T Consensus        68 dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd-~~~~r~~~Ec~~~vs~~~  123 (476)
T KOG0376|consen   68 DPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPND-PDATRKIDECNKIVSEEK  123 (476)
T ss_pred             CchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCc-HHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999997 789999999988777544

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.36  E-value=1.7e-11  Score=103.22  Aligned_cols=114  Identities=19%  Similarity=0.369  Sum_probs=101.0

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +..+...|..++..|+|.+|...|++++.    ..|.+           ..++.++|.|++++++|.+|+..+.+++.++
T Consensus        17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~p~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~   81 (135)
T TIGR02552        17 LEQIYALAYNLYQQGRYDEALKLFQLLAA----YDPYN-----------SRYWLGLAACCQMLKEYEEAIDAYALAAALD   81 (135)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            44567888999999999999999999998    56666           6789999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 015006          266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  315 (414)
Q Consensus       266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~  315 (414)
                      |.++..++.+|.++..+|++++|+..|+++++++|++ ........++..
T Consensus        82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~  130 (135)
T TIGR02552        82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGEN-PEYSELKERAEA  130 (135)
T ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-chHHHHHHHHHH
Confidence            9999999999999999999999999999999999997 455544544443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.33  E-value=1.2e-12  Score=98.61  Aligned_cols=45  Identities=22%  Similarity=0.318  Sum_probs=41.4

Q ss_pred             CccccCCcCcEEEEEEcCCCcCCCC-CCCCCCCCCeeeEEEEeeEE
Q 015006            1 MGIGTMTREEKAVIYVTSQYLTPSP-LMPVVEGCEEVHFEVELVHL   45 (414)
Q Consensus         1 ~~~~~m~~Ge~~~~~i~~~~~~g~~-~~~~ip~~~~l~~~vel~~~   45 (414)
                      .||+.|-+||+|.++|+|+||||.. .|+.||||++|+|+|||++.
T Consensus        62 egv~qmsvGekakLti~pd~aYG~~G~p~~IppNatL~FdVEll~v  107 (108)
T KOG0544|consen   62 EGVAQMSVGEKAKLTISPDYAYGPRGHPGGIPPNATLVFDVELLKV  107 (108)
T ss_pred             hcchhccccccceeeeccccccCCCCCCCccCCCcEEEEEEEEEec
Confidence            4899999999999999999999985 46789999999999999975

>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.30  E-value=6.6e-12  Score=108.13  Aligned_cols=69  Identities=22%  Similarity=0.340  Sum_probs=62.0

Q ss_pred             CCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCCeEEEEecCCCccccC
Q 015006           75 LHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKF  147 (414)
Q Consensus        75 ~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~~v~i~~~~~yg~~  147 (414)
                      ..|+.|++||++++.|  |++| ++++. .+.|+.|.+|.|.+++||+.+|.+|++|+++.|.|||+.|||..
T Consensus         6 ~~~~~V~v~Y~~~~~d--G~v~-dst~~-~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~   74 (156)
T PRK15095          6 QSNSAVLVHFTLKLDD--GSTA-ESTRN-NGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVP   74 (156)
T ss_pred             CCCCEEEEEEEEEeCC--CCEE-EECCC-CCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCC
Confidence            5789999999999865  8988 66553 47899999999999999999999999999999999999999954

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.30  E-value=7e-11  Score=100.38  Aligned_cols=102  Identities=9%  Similarity=0.090  Sum_probs=94.2

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      .+.+-..|..++..|++.+|...|+-...    .+|.+           ...++|+|.|+..+|+|.+|+..|.+|+.++
T Consensus        35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~----~Dp~~-----------~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~   99 (157)
T PRK15363         35 LNTLYRYAMQLMEVKEFAGAARLFQLLTI----YDAWS-----------FDYWFRLGECCQAQKHWGEAIYAYGRAAQIK   99 (157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCccc-----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            45567788999999999999999999988    67777           7799999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      |+++.++++.|.|++.+|+.+.|++.|+.|+...-.+
T Consensus       100 ~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~  136 (157)
T PRK15363        100 IDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEV  136 (157)
T ss_pred             CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC
Confidence            9999999999999999999999999999999987443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.28  E-value=1.6e-11  Score=90.93  Aligned_cols=66  Identities=32%  Similarity=0.605  Sum_probs=64.1

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q 015006          235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG-EFEEAQRDFEMMMKVDK  300 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~-~~~eA~~~~~~al~l~P  300 (414)
                      +.++.++|.+++.+++|++|+.+|+++|+++|+++.+++++|.++..+| ++++|+++|++|++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            5688999999999999999999999999999999999999999999999 79999999999999998

...

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.24  E-value=9.5e-11  Score=112.51  Aligned_cols=103  Identities=22%  Similarity=0.244  Sum_probs=98.4

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      .+..+.++|..+...|++..|+..|++++.    ..|.+           ..+|+++|.++..+|+|++|+..+.+++++
T Consensus        63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~----l~P~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l  127 (296)
T PRK11189         63 RAQLHYERGVLYDSLGLRALARNDFSQALA----LRPDM-----------ADAYNYLGIYLTQAGNFDAAYEAFDSVLEL  127 (296)
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----cCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            467788999999999999999999999999    78877           679999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          265 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       265 dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      +|++..+++++|.++...|++++|+.+|+++++++|++
T Consensus       128 ~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~  165 (296)
T PRK11189        128 DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPND  165 (296)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999999999999999997

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.20  E-value=3.7e-10  Score=101.79  Aligned_cols=103  Identities=15%  Similarity=0.250  Sum_probs=95.0

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHH-HHcCC--HHHHHHHHHHHH
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACL-LKLGE--CRKSIEACNKVL  262 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~-~kl~~--~~~A~~~~~~al  262 (414)
                      +..+...|..+...|+|..|+..|.+|+.    +.|.+           ..+++++|.|+ ...|+  +.+|+..+.+++
T Consensus        73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~----l~P~~-----------~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al  137 (198)
T PRK10370         73 SEQWALLGEYYLWRNDYDNALLAYRQALQ----LRGEN-----------AELYAALATVLYYQAGQHMTPQTREMIDKAL  137 (198)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            55688889999999999999999999999    78887           77999999985 67787  599999999999


Q ss_pred             HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 015006          263 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  303 (414)
Q Consensus       263 ~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~  303 (414)
                      +++|+++.+++.+|.+++.+|+|++|+..|+++++++|.+.
T Consensus       138 ~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~  178 (198)
T PRK10370        138 ALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV  178 (198)
T ss_pred             HhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            99999999999999999999999999999999999999864

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.17  E-value=1.1e-10  Score=116.23  Aligned_cols=80  Identities=19%  Similarity=0.329  Sum_probs=65.3

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                      +.+++|+|..|-.+|++++|+.+++.||+++|..+.||.++|+.|..+|+...|+.+|.+|+.++|.. +++..+|..+.
T Consensus       388 aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~-AeAhsNLasi~  466 (966)
T KOG4626|consen  388 AAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTF-AEAHSNLASIY  466 (966)
T ss_pred             hhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHH-HHHHhhHHHHh
Confidence            56788888888888888888888888888888888888888888888888888888888888888876 67777777765


Q ss_pred             H
Q 015006          315 K  315 (414)
Q Consensus       315 ~  315 (414)
                      +
T Consensus       467 k  467 (966)
T KOG4626|consen  467 K  467 (966)
T ss_pred             h
Confidence            4

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.15  E-value=3.1e-10  Score=113.05  Aligned_cols=114  Identities=24%  Similarity=0.317  Sum_probs=84.9

Q ss_pred             HHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 015006          189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  268 (414)
Q Consensus       189 ~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~  268 (414)
                      +-+.|-.|+.+|..+.||..|++||.    +.|..           ..+|+|+|.++-..|+..+|..++++||.+.|++
T Consensus       289 ~gNla~iYyeqG~ldlAI~~Ykral~----~~P~F-----------~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~h  353 (966)
T KOG4626|consen  289 HGNLACIYYEQGLLDLAIDTYKRALE----LQPNF-----------PDAYNNLANALKDKGSVTEAVDCYNKALRLCPNH  353 (966)
T ss_pred             ccceEEEEeccccHHHHHHHHHHHHh----cCCCc-----------hHHHhHHHHHHHhccchHHHHHHHHHHHHhCCcc
Confidence            33444455555555555555555555    44444           4588888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 015006          269 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  318 (414)
Q Consensus       269 ~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~  318 (414)
                      +.+++++|+++.++|.+++|...|.+||+..|.. ..+..+|..+.+...
T Consensus       354 adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~-aaa~nNLa~i~kqqg  402 (966)
T KOG4626|consen  354 ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEF-AAAHNNLASIYKQQG  402 (966)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhh-hhhhhhHHHHHHhcc
Confidence            8888888888888888888888888888888886 667777777765443

>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.14  E-value=1.7e-10  Score=102.23  Aligned_cols=68  Identities=19%  Similarity=0.296  Sum_probs=60.5

Q ss_pred             CCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCCeEEEEecCCCccccC
Q 015006           75 LHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKF  147 (414)
Q Consensus        75 ~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~~v~i~~~~~yg~~  147 (414)
                      ..++.|+|+|++++.+  |++| +++.  ...|++|.+|.+.++|+||.+|.+|.+|++..|+|+|+.|||..
T Consensus         4 ~~~~vV~l~Y~l~~~d--G~v~-dst~--~~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~   71 (196)
T PRK10737          4 AKDLVVSLAYQVRTED--GVLV-DESP--VSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQY   71 (196)
T ss_pred             CCCCEEEEEEEEEeCC--CCEE-EecC--CCCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCC
Confidence            3688999999999865  9988 5554  36899999999999999999999999999999999999999954

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.12  E-value=5.4e-11  Score=111.25  Aligned_cols=123  Identities=27%  Similarity=0.439  Sum_probs=111.3

Q ss_pred             CCchhhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHH
Q 015006          176 GLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSI  255 (414)
Q Consensus       176 ~~~~~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~  255 (414)
                      ....++.+++|...+-.+.+++..|.+..|+..|+.||.    ++|..           +.+|.+++.++++++.+..|+
T Consensus       104 ~e~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~----lnp~~-----------a~l~~kr~sv~lkl~kp~~ai  168 (377)
T KOG1308|consen  104 AEITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIE----LNPPL-----------AILYAKRASVFLKLKKPNAAI  168 (377)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccc----cCCch-----------hhhcccccceeeeccCCchhh
Confidence            345688999999999999999999999999999999999    77776           789999999999999999999


Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 015006          256 EACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  315 (414)
Q Consensus       256 ~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~  315 (414)
                      .+|..|++++|+.++.|-.+|.|+..+|+|++|..+|..|++++-+  .++-..|..+..
T Consensus       169 rD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d--E~~~a~lKeV~p  226 (377)
T KOG1308|consen  169 RDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD--EANSATLKEVFP  226 (377)
T ss_pred             hhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcccc--HHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999865  345555665543

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.11  E-value=1.4e-09  Score=114.96  Aligned_cols=113  Identities=23%  Similarity=0.272  Sum_probs=87.1

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +..+...|..++..|++.+|+..|.+++.    +.|..           ..+|.++|.++..+|+|++|+.++.++++++
T Consensus       331 a~a~~~lg~~~~~~g~~~eA~~~~~kal~----l~P~~-----------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~  395 (615)
T TIGR00990       331 AIALNLRGTFKCLKGKHLEALADLSKSIE----LDPRV-----------TQSYIKRASMNLELGDPDKAEEDFDKALKLN  395 (615)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCc-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            44567788899999999999999999998    66665           4567777777777778888888777777777


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                      |+++.+++.+|.++..+|++++|+.+|+++++++|++ ..+...+..+.
T Consensus       396 p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~-~~~~~~la~~~  443 (615)
T TIGR00990       396 SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF-IFSHIQLGVTQ  443 (615)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC-HHHHHHHHHHH
Confidence            7777777788887777788888888888887777776 44554454444

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.11  E-value=1.3e-09  Score=89.04  Aligned_cols=104  Identities=19%  Similarity=0.263  Sum_probs=91.8

Q ss_pred             HHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 015006          187 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  266 (414)
Q Consensus       187 ~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp  266 (414)
                      ..+...|..+++.|+|.+|+..|.+++.    ..|.+.        ....+++++|.++++.++|..|+..+..++..+|
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p   70 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLK----KYPKST--------YAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP   70 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCcc--------ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC
Confidence            4566788899999999999999999998    344331        1245788999999999999999999999999998


Q ss_pred             Cc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          267 AH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       267 ~~---~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      ++   +.+++.+|.++..++++++|+..|.++++..|++
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  109 (119)
T TIGR02795        71 KSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGS  109 (119)
T ss_pred             CCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence            85   6789999999999999999999999999999997

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.09  E-value=2.3e-09  Score=94.52  Aligned_cols=111  Identities=21%  Similarity=0.315  Sum_probs=95.6

Q ss_pred             hhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015006          181 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK  260 (414)
Q Consensus       181 e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~  260 (414)
                      .....+..+...|..++..|+|.+|+.+|.+++..    .+...+        ...++.|+|.++.++|+|++|+..+.+
T Consensus        30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~   97 (172)
T PRK02603         30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKL----EEDPND--------RSYILYNMGIIYASNGEHDKALEYYHQ   97 (172)
T ss_pred             cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----hhccch--------HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            34556888899999999999999999999999983    332210        146899999999999999999999999


Q ss_pred             HHHhCCCcHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhhCCCCH
Q 015006          261 VLDANPAHVKGLYRRGMAYMALGE--------------FEEAQRDFEMMMKVDKSSE  303 (414)
Q Consensus       261 al~~dp~~~ka~~r~g~a~~~l~~--------------~~eA~~~~~~al~l~P~n~  303 (414)
                      ++.+.|.+..+++.+|.++..+|+              +++|++.+++++.++|++-
T Consensus        98 al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~  154 (172)
T PRK02603         98 ALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY  154 (172)
T ss_pred             HHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence            999999999999999999999988              6788888888888888863

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.09  E-value=9.4e-10  Score=102.89  Aligned_cols=103  Identities=22%  Similarity=0.449  Sum_probs=98.4

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      .+.+..+.|+.++.+|+|..|+..|..|++    .+|.+           ..+++.+|.+|+-+|+-.-|+.++.++|++
T Consensus        37 dvekhlElGk~lla~~Q~sDALt~yHaAve----~dp~~-----------Y~aifrRaT~yLAmGksk~al~Dl~rVlel  101 (504)
T KOG0624|consen   37 DVEKHLELGKELLARGQLSDALTHYHAAVE----GDPNN-----------YQAIFRRATVYLAMGKSKAALQDLSRVLEL  101 (504)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHc----CCchh-----------HHHHHHHHHHHhhhcCCccchhhHHHHHhc
Confidence            477788999999999999999999999999    78877           778999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          265 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       265 dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      .|+..-|...||.+++++|++++|..+|.++|+.+|++
T Consensus       102 KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~  139 (504)
T KOG0624|consen  102 KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSN  139 (504)
T ss_pred             CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCc
Confidence            99999999999999999999999999999999999976

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.04  E-value=6.1e-10  Score=85.90  Aligned_cols=83  Identities=29%  Similarity=0.514  Sum_probs=71.6

Q ss_pred             cccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 015006          199 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA  278 (414)
Q Consensus       199 ~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a  278 (414)
                      .|+|..|+..|.+++.    ..|.+.         ....++++|.||+++|+|++|+..+++ +..++.++..++-+|+|
T Consensus         2 ~~~y~~Ai~~~~k~~~----~~~~~~---------~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~   67 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLE----LDPTNP---------NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARC   67 (84)
T ss_dssp             TT-HHHHHHHHHHHHH----HHCGTH---------HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHH----HCCCCh---------hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHH
Confidence            5899999999999999    344321         145778899999999999999999999 88999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHH
Q 015006          279 YMALGEFEEAQRDFEMM  295 (414)
Q Consensus       279 ~~~l~~~~eA~~~~~~a  295 (414)
                      +..+|+|++|+..|++|
T Consensus        68 ~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   68 LLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHTT-HHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHhcC
Confidence            99999999999999875

>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=7.4e-10  Score=95.15  Aligned_cols=69  Identities=26%  Similarity=0.396  Sum_probs=61.5

Q ss_pred             CCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCCeEEEEecCCCccccC
Q 015006           75 LHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKF  147 (414)
Q Consensus        75 ~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~~v~i~~~~~yg~~  147 (414)
                      ..|+.|+++|++++.|  |++| ||+.. ...|+.|.+|.|++++|||.||.+|.+|+...|.|||+.|||..
T Consensus         4 ~k~~~V~i~Y~~~~~d--g~v~-Dtt~e-~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~   72 (174)
T COG1047           4 EKGDVVSLHYTLKVED--GEVV-DTTDE-NYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEY   72 (174)
T ss_pred             cCCCEEEEEEEEEecC--CcEE-Ecccc-cCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCC
Confidence            3689999999999976  8888 55542 36799999999999999999999999999999999999999954

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.02  E-value=1.2e-09  Score=79.74  Aligned_cols=64  Identities=22%  Similarity=0.416  Sum_probs=60.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          239 LNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       239 ~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      +++|..+++.|+|++|+..++++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+|
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            3589999999999999999999999999999999999999999999999999999999999987

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.01  E-value=6.7e-09  Score=113.71  Aligned_cols=116  Identities=11%  Similarity=0.101  Sum_probs=97.2

Q ss_pred             HHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 015006          187 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  266 (414)
Q Consensus       187 ~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp  266 (414)
                      ..+...|..+.+.|++.+|+..|.+++.    +.|.+           ..+++|+|.++..+|++++|+..+.++++++|
T Consensus       610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~----l~Pd~-----------~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P  674 (987)
T PRK09782        610 NAYVARATIYRQRHNVPAAVSDLRAALE----LEPNN-----------SNYQAALGYALWDSGDIAQSREMLERAHKGLP  674 (987)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            3455667777788888888888888887    67776           67899999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 015006          267 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  318 (414)
Q Consensus       267 ~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~  318 (414)
                      +++.+++++|.++..+|++++|+..|++|++++|++ ..+......+..+..
T Consensus       675 ~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~-a~i~~~~g~~~~~~~  725 (987)
T PRK09782        675 DDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ-ALITPLTPEQNQQRF  725 (987)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-chhhhhhhHHHHHHH
Confidence            999999999999999999999999999999999987 566665555544433

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.01  E-value=9.9e-09  Score=90.02  Aligned_cols=113  Identities=19%  Similarity=0.207  Sum_probs=93.2

Q ss_pred             hHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015006          183 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  262 (414)
Q Consensus       183 ~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al  262 (414)
                      ...+..+...|..++..|+|.+|+..|.+|+..    .+...        ....++.|+|.++.++|++++|+..+.+++
T Consensus        32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l----~~~~~--------~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al   99 (168)
T CHL00033         32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRL----EIDPY--------DRSYILYNIGLIHTSNGEHTKALEYYFQAL   99 (168)
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----cccch--------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            346888899999999999999999999999983    33221        124589999999999999999999999999


Q ss_pred             HhCCCcHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHhhCCCCHHHHH
Q 015006          263 DANPAHVKGLYRRGMAYM-------ALGEFE-------EAQRDFEMMMKVDKSSEPDAT  307 (414)
Q Consensus       263 ~~dp~~~ka~~r~g~a~~-------~l~~~~-------eA~~~~~~al~l~P~n~~~~~  307 (414)
                      .++|.+..+++.+|.++.       .+|+++       +|+..|++++.++|.+...+.
T Consensus       100 ~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~  158 (168)
T CHL00033        100 ERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQ  158 (168)
T ss_pred             HhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHH
Confidence            999999999999999999       777776       556666677888988644333

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.01  E-value=3.6e-09  Score=103.11  Aligned_cols=103  Identities=25%  Similarity=0.369  Sum_probs=98.0

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      .|..+.-+|..+|-.|++..|...+.++|.    +.|.+           ..+|.-||..|+..++-.+-..++++|..+
T Consensus       325 ~A~al~~~gtF~fL~g~~~~a~~d~~~~I~----l~~~~-----------~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l  389 (606)
T KOG0547|consen  325 MAEALLLRGTFHFLKGDSLGAQEDFDAAIK----LDPAF-----------NSLYIKRAAAYADENQSEKMWKDFNKAEDL  389 (606)
T ss_pred             HHHHHHHhhhhhhhcCCchhhhhhHHHHHh----cCccc-----------chHHHHHHHHHhhhhccHHHHHHHHHHHhc
Confidence            588899999999999999999999999999    67766           567999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          265 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       265 dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      ||.|+..||.||+.++-+++|++|+.+|++|+.|+|+|
T Consensus       390 dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~  427 (606)
T KOG0547|consen  390 DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPEN  427 (606)
T ss_pred             CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhh
Confidence            99999999999999999999999999999999999997

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.99  E-value=1.5e-09  Score=101.47  Aligned_cols=133  Identities=21%  Similarity=0.342  Sum_probs=112.9

Q ss_pred             CCCchhhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHH
Q 015006          175 TGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKS  254 (414)
Q Consensus       175 ~~~~~~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A  254 (414)
                      ...++-.+++.+.+..+.+......++|.+++..+.+.++    ..|..       ...+...+--++.|+..-+++-+|
T Consensus       258 ~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk----~ep~~-------~~ir~~~~r~~c~C~~~d~~~~eA  326 (504)
T KOG0624|consen  258 LCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK----NEPEE-------TMIRYNGFRVLCTCYREDEQFGEA  326 (504)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh----cCCcc-------cceeeeeeheeeecccccCCHHHH
Confidence            3456778888888888888999999999999999999998    45542       112233455578999999999999


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 015006          255 IEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQE  319 (414)
Q Consensus       255 ~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~  319 (414)
                      |+.|+.+|.++|+++.++..||.||+.-..|+.|+.+|++|++++++| ..++.-+.+.++..++
T Consensus       327 iqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn-~~~reGle~Akrlkkq  390 (504)
T KOG0624|consen  327 IQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN-TRAREGLERAKRLKKQ  390 (504)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc-HHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998 6788888887765443

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.99  E-value=3.9e-09  Score=80.69  Aligned_cols=98  Identities=33%  Similarity=0.587  Sum_probs=87.1

Q ss_pred             HHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 015006          189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  268 (414)
Q Consensus       189 ~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~  268 (414)
                      +...|..++..|++.+|+..|.+++.    ..|.+           ..++.++|.++...+++++|+..+..++.+.|.+
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~   67 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALE----LDPDN-----------ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN   67 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHh----cCCcc-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            45677888889999999999999998    45554           3578899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015006          269 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  301 (414)
Q Consensus       269 ~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~  301 (414)
                      ..+++.+|.++..+|+++.|...+.++++++|.
T Consensus        68 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          68 AKAYYNLGLAYYKLGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             hhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence            999999999999999999999999999988874

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.97  E-value=1.1e-09  Score=81.03  Aligned_cols=66  Identities=29%  Similarity=0.499  Sum_probs=61.8

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG-ECRKSIEACNKVLDA  264 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~-~~~~A~~~~~~al~~  264 (414)
                      |..+...|..++..|+|.+|+..|++|+.    ++|.+           ..+++|+|.||.+++ +|.+|+.+++++|++
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~----~~p~~-----------~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIE----LDPNN-----------AEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHH----HSTTH-----------HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCC-----------HHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            67889999999999999999999999999    56766           779999999999999 799999999999999


Q ss_pred             CC
Q 015006          265 NP  266 (414)
Q Consensus       265 dp  266 (414)
                      +|
T Consensus        68 ~P   69 (69)
T PF13414_consen   68 DP   69 (69)
T ss_dssp             ST
T ss_pred             Cc
Confidence            98

...

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=8.5e-09  Score=102.17  Aligned_cols=118  Identities=16%  Similarity=0.154  Sum_probs=101.4

Q ss_pred             HHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 015006          188 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  267 (414)
Q Consensus       188 ~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~  267 (414)
                      .+++.|...|..+.|.+|...|++++..+....+...        ....+++|+|.++.|++.|.+|+..++++|.+.|.
T Consensus       416 v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~--------~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k  487 (611)
T KOG1173|consen  416 VLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKI--------FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK  487 (611)
T ss_pred             hhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccccc--------chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence            4678899999999999999999999965443333220        23578999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          268 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       268 ~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                      ++.+|--.|.+|..+|+++.|+..|.+||.++|+| .-+...|..+-
T Consensus       488 ~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n-~~~~~lL~~ai  533 (611)
T KOG1173|consen  488 DASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN-IFISELLKLAI  533 (611)
T ss_pred             chhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc-HHHHHHHHHHH
Confidence            99999999999999999999999999999999998 55666666543

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.93  E-value=3.3e-08  Score=89.15  Aligned_cols=127  Identities=11%  Similarity=0.121  Sum_probs=106.2

Q ss_pred             ccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 015006          198 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGM  277 (414)
Q Consensus       198 k~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~  277 (414)
                      ..++..+++..|.+++.    ..|.+           ...+.++|.+|+.+++++.|+..+.++++++|+++.+++.+|.
T Consensus        51 ~~~~~~~~i~~l~~~L~----~~P~~-----------~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~  115 (198)
T PRK10370         51 SQQTPEAQLQALQDKIR----ANPQN-----------SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALAT  115 (198)
T ss_pred             CchhHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            46788999999999999    78888           6799999999999999999999999999999999999999999


Q ss_pred             HH-HHcCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccc
Q 015006          278 AY-MALGE--FEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPGEISE  341 (414)
Q Consensus       278 a~-~~l~~--~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (414)
                      ++ ...|+  +++|++.|+++++++|++ ..+...+..+........ .....+.+++...+.+.+.
T Consensus       116 aL~~~~g~~~~~~A~~~l~~al~~dP~~-~~al~~LA~~~~~~g~~~-~Ai~~~~~aL~l~~~~~~r  180 (198)
T PRK10370        116 VLYYQAGQHMTPQTREMIDKALALDANE-VTALMLLASDAFMQADYA-QAIELWQKVLDLNSPRVNR  180 (198)
T ss_pred             HHHHhcCCCCcHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHcCCHH-HHHHHHHHHHhhCCCCccH
Confidence            86 67787  599999999999999998 678888887766555444 3455677776655544433

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.91  E-value=1.4e-08  Score=86.76  Aligned_cols=108  Identities=17%  Similarity=0.202  Sum_probs=88.3

Q ss_pred             HHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 015006          206 KAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF  285 (414)
Q Consensus       206 ~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~  285 (414)
                      ...|.+++.    ++|.              .+.++|.++..+|+|++|+..|.+++.++|.+..+++.+|.++..+|++
T Consensus        13 ~~~~~~al~----~~p~--------------~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~   74 (144)
T PRK15359         13 EDILKQLLS----VDPE--------------TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEY   74 (144)
T ss_pred             HHHHHHHHH----cCHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhH
Confidence            356777777    4443              2557899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015006          286 EEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFD  333 (414)
Q Consensus       286 ~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  333 (414)
                      ++|+..|.+|++++|++ ..+...+..+.....+..+ ....+.....
T Consensus        75 ~~A~~~y~~Al~l~p~~-~~a~~~lg~~l~~~g~~~e-Ai~~~~~Al~  120 (144)
T PRK15359         75 TTAINFYGHALMLDASH-PEPVYQTGVCLKMMGEPGL-AREAFQTAIK  120 (144)
T ss_pred             HHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHcCCHHH-HHHHHHHHHH
Confidence            99999999999999998 6788888887765544333 3444444443

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.91  E-value=3.6e-08  Score=91.12  Aligned_cols=114  Identities=20%  Similarity=0.288  Sum_probs=97.6

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      .+..+...|..++..|+|..|+..|.+++.    ..|.++        ....+++++|.+++++++|++|+..+.++++.
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~----~~p~~~--------~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~   99 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALES----RYPFSP--------YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL   99 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCch--------hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            366778899999999999999999999998    556542        12357899999999999999999999999999


Q ss_pred             CCCcHH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 015006          265 NPAHVK---GLYRRGMAYMAL--------GEFEEAQRDFEMMMKVDKSSEPDATAALS  311 (414)
Q Consensus       265 dp~~~k---a~~r~g~a~~~l--------~~~~eA~~~~~~al~l~P~n~~~~~~~l~  311 (414)
                      .|+++.   ++|.+|.++..+        |++++|+..|++++..+|++ ..+...+.
T Consensus       100 ~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~a~~  156 (235)
T TIGR03302       100 HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS-EYAPDAKK  156 (235)
T ss_pred             CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC-hhHHHHHH
Confidence            998876   799999999987        88999999999999999998 44443333

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.88  E-value=3.9e-09  Score=106.37  Aligned_cols=116  Identities=16%  Similarity=0.271  Sum_probs=74.8

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      .+.|...||.+--+++++.|+++|.+|+.    ++|..           +-+|.-+|.=+....+|+.|..+|.+||.++
T Consensus       421 PesWca~GNcfSLQkdh~~Aik~f~RAiQ----ldp~f-----------aYayTLlGhE~~~~ee~d~a~~~fr~Al~~~  485 (638)
T KOG1126|consen  421 PESWCALGNCFSLQKDHDTAIKCFKRAIQ----LDPRF-----------AYAYTLLGHESIATEEFDKAMKSFRKALGVD  485 (638)
T ss_pred             cHHHHHhcchhhhhhHHHHHHHHHHHhhc----cCCcc-----------chhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence            67899999999999999999999999999    67755           3445555555555555555555555555555


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 015006          266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  317 (414)
Q Consensus       266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~  317 (414)
                      |.+-.|||-+|.+|+++++++.|.-.|++|++++|.| ..+.-.+..+..++
T Consensus       486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~n-svi~~~~g~~~~~~  536 (638)
T KOG1126|consen  486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSN-SVILCHIGRIQHQL  536 (638)
T ss_pred             chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccc-hhHHhhhhHHHHHh
Confidence            5555555555555555555555555555555555555 33444444443333

>PRK12370 invasion protein regulator; Provisional

Probab=98.86  E-value=3.8e-08  Score=102.67  Aligned_cols=103  Identities=16%  Similarity=0.044  Sum_probs=87.6

Q ss_pred             HHHHHHhhhcc--ccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015006          185 EAEKIRVTGNR--LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  262 (414)
Q Consensus       185 ~a~~~k~~Gn~--~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al  262 (414)
                      .+..+...++.  +...+++.+|+..+.+|+.    ++|.+           ..++.++|.++..+|++++|+..+++|+
T Consensus       301 La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~----ldP~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~Al  365 (553)
T PRK12370        301 LAECYLSMAQMGIFDKQNAMIKAKEHAIKATE----LDHNN-----------PQALGLLGLINTIHSEYIVGSLLFKQAN  365 (553)
T ss_pred             HHHHHHHHHHcCCcccchHHHHHHHHHHHHHh----cCCCC-----------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            34444444432  3366789999999999999    78887           5688889999999999999999999999


Q ss_pred             HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          263 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       263 ~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      +++|+++.+++.+|.++..+|++++|+..|++|++++|.+
T Consensus       366 ~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~  405 (553)
T PRK12370        366 LLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR  405 (553)
T ss_pred             HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence            9999999999999999999999999999999999999987

>PRK12370 invasion protein regulator; Provisional

Probab=98.86  E-value=6.5e-08  Score=100.96  Aligned_cols=129  Identities=11%  Similarity=0.087  Sum_probs=106.1

Q ss_pred             HHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 015006          188 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  267 (414)
Q Consensus       188 ~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~  267 (414)
                      .+...|..+...|++.+|+..|.+|+.    +.|.+           ..+++++|.++..+|++++|+..+.++++++|.
T Consensus       340 a~~~lg~~~~~~g~~~~A~~~~~~Al~----l~P~~-----------~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~  404 (553)
T PRK12370        340 ALGLLGLINTIHSEYIVGSLLFKQANL----LSPIS-----------ADIKYYYGWNLFMAGQLEEALQTINECLKLDPT  404 (553)
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            355678888899999999999999999    78887           668999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015006          268 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD-KSSEPDATAALSKLKKQRQEVESKARKQFKGLFD  333 (414)
Q Consensus       268 ~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~-P~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  333 (414)
                      ++.+++.++.+++.+|++++|+..++++++.. |++ +.+...+..+.....+..+. ...+.++..
T Consensus       405 ~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~-~~~~~~la~~l~~~G~~~eA-~~~~~~~~~  469 (553)
T PRK12370        405 RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDN-PILLSMQVMFLSLKGKHELA-RKLTKEIST  469 (553)
T ss_pred             ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccC-HHHHHHHHHHHHhCCCHHHH-HHHHHHhhh
Confidence            99888888888999999999999999999886 555 66777777776554433333 334454443

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.85  E-value=5.1e-09  Score=104.05  Aligned_cols=98  Identities=27%  Similarity=0.399  Sum_probs=92.3

Q ss_pred             HHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 015006          189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  268 (414)
Q Consensus       189 ~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~  268 (414)
                      ....|..|+-.|+|.+|+.+|+.||.    ..|.+           ..+++.+|+.+..-.+..+|+..|.+||.+.|..
T Consensus       433 Q~~LGVLy~ls~efdraiDcf~~AL~----v~Pnd-----------~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y  497 (579)
T KOG1125|consen  433 QSGLGVLYNLSGEFDRAVDCFEAALQ----VKPND-----------YLLWNRLGATLANGNRSEEAISAYNRALQLQPGY  497 (579)
T ss_pred             HhhhHHHHhcchHHHHHHHHHHHHHh----cCCch-----------HHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe
Confidence            34578888899999999999999999    89988           7899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015006          269 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  301 (414)
Q Consensus       269 ~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~  301 (414)
                      +.+.|++|.+++.+|.|++|+..|..||.+.+.
T Consensus       498 VR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  498 VRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             eeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence            999999999999999999999999999999765

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.84  E-value=1.6e-07  Score=76.44  Aligned_cols=117  Identities=21%  Similarity=0.317  Sum_probs=99.4

Q ss_pred             hhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHH
Q 015006          180 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN  259 (414)
Q Consensus       180 ~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~  259 (414)
                      ..-++....+--+|..+-..|+...|++.|.++|.    +.|..           .++|+|+|.++.-.++.++|+.+.+
T Consensus        37 ~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~----l~P~r-----------aSayNNRAQa~RLq~~~e~ALdDLn  101 (175)
T KOG4555|consen   37 TQAIKASRELELKAIALAEAGDLDGALELFGQALC----LAPER-----------ASAYNNRAQALRLQGDDEEALDDLN  101 (175)
T ss_pred             hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH----hcccc-----------hHhhccHHHHHHHcCChHHHHHHHH
Confidence            44566777888889999999999999999999999    45554           7899999999999999999999999


Q ss_pred             HHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          260 KVLDANPAH----VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       260 ~al~~dp~~----~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                      +|+++....    ..+|..||..|..+|+-+.|..+|+.|-++-...   ++..|-.+.
T Consensus       102 ~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~F---Ar~QLV~lN  157 (175)
T KOG4555|consen  102 KALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKF---AREQLVELN  157 (175)
T ss_pred             HHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHH---HHHHHHhcC
Confidence            999987543    5689999999999999999999999999997543   555554443

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.84  E-value=8.2e-08  Score=92.19  Aligned_cols=106  Identities=17%  Similarity=0.179  Sum_probs=89.4

Q ss_pred             cccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 015006          199 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA  278 (414)
Q Consensus       199 ~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a  278 (414)
                      .+..+.++..+.++|..    .+.++       ......|+++|.+|..+|++.+|+.++.++++++|+++.+|+.+|.+
T Consensus        39 ~~~~e~~i~~~~~~l~~----~~~~~-------~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~  107 (296)
T PRK11189         39 TLQQEVILARLNQILAS----RDLTD-------EERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIY  107 (296)
T ss_pred             chHHHHHHHHHHHHHcc----ccCCc-------HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            35677899999998862    22221       12356899999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 015006          279 YMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  316 (414)
Q Consensus       279 ~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~  316 (414)
                      +..+|++++|+..|++|++++|++ ..+...+..+...
T Consensus       108 ~~~~g~~~~A~~~~~~Al~l~P~~-~~a~~~lg~~l~~  144 (296)
T PRK11189        108 LTQAGNFDAAYEAFDSVLELDPTY-NYAYLNRGIALYY  144 (296)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Confidence            999999999999999999999998 5666666665443

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.84  E-value=5.5e-08  Score=86.83  Aligned_cols=116  Identities=16%  Similarity=0.204  Sum_probs=73.7

Q ss_pred             hHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHH-----------------------HHhhhhhHHHH
Q 015006          183 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGK-----------------------VFVGKRNLLHL  239 (414)
Q Consensus       183 ~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~-----------------------~~~~~~~~~~~  239 (414)
                      -..+....+.|..++..|++..|....++||+    .+|++.....                       .+..-...+++
T Consensus        32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~----~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLN  107 (250)
T COG3063          32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALE----HDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLN  107 (250)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhh
Confidence            34577788999999999999999999999999    6776621100                       01111223445


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          240 NVAACLLKLGECRKSIEACNKVLDA--NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       240 N~a~~~~kl~~~~~A~~~~~~al~~--dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      |-|.-+..+|.|++|...+.+|+..  -+.-+..+-++|.|.++.|+++.|...|+++|+++|++
T Consensus       108 NYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~  172 (250)
T COG3063         108 NYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF  172 (250)
T ss_pred             hhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC
Confidence            5555555555555555555555432  12335666677777777777777777777777777776

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.84  E-value=2.1e-08  Score=74.85  Aligned_cols=67  Identities=24%  Similarity=0.431  Sum_probs=61.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 015006          242 AACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAA  309 (414)
Q Consensus       242 a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~  309 (414)
                      ...|++.++|..|+..+++++.++|+++.+++.+|.++..+|+|.+|+.+|++++++.|++ ..+...
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~-~~~~~~   68 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD-PDARAL   68 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc-HHHHHH
Confidence            4678899999999999999999999999999999999999999999999999999999987 444433

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.83  E-value=4.6e-08  Score=103.39  Aligned_cols=115  Identities=7%  Similarity=0.052  Sum_probs=99.9

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +..+...|......|.|++|...+..++.    +.|++           ..+..|+|.++.+++++++|+..|.++|..+
T Consensus        86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~----~~Pd~-----------~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~  150 (694)
T PRK15179         86 ELFQVLVARALEAAHRSDEGLAVWRGIHQ----RFPDS-----------SEAFILMLRGVKRQQGIEAGRAEIELYFSGG  150 (694)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHh----hCCCc-----------HHHHHHHHHHHHHhccHHHHHHHHHHHhhcC
Confidence            66677788888899999999999999999    77877           7789999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 015006          266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  316 (414)
Q Consensus       266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~  316 (414)
                      |+++.+++.+|.++.++|+|++|++.|++++..+|++ +.+.-.+..+-+.
T Consensus       151 p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~-~~~~~~~a~~l~~  200 (694)
T PRK15179        151 SSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEF-ENGYVGWAQSLTR  200 (694)
T ss_pred             CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHH
Confidence            9999999999999999999999999999999988876 5566666555443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.82  E-value=1.2e-07  Score=85.71  Aligned_cols=112  Identities=19%  Similarity=0.293  Sum_probs=86.1

Q ss_pred             HHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 015006          189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  268 (414)
Q Consensus       189 ~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~  268 (414)
                      +...|..++..|+|.+|+..|.+++..    .+.         .....++.++|.|+..+|++.+|+..+.+++..+|.+
T Consensus       102 ~~~~~~~~~~~g~~~~A~~~~~~~~~~----~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  168 (234)
T TIGR02521       102 LNNYGTFLCQQGKYEQAMQQFEQAIED----PLY---------PQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR  168 (234)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhc----ccc---------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence            445566666777777777777777762    110         1124578889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          269 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       269 ~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                      +.+++.+|.++..+|++++|+..+++++.+.|.+ ......+..+.
T Consensus       169 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~  213 (234)
T TIGR02521       169 PESLLELAELYYLRGQYKDARAYLERYQQTYNQT-AESLWLGIRIA  213 (234)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence            9999999999999999999999999999997776 44444444443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.82  E-value=7.4e-08  Score=105.64  Aligned_cols=104  Identities=15%  Similarity=0.179  Sum_probs=88.1

Q ss_pred             cccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 015006          199 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA  278 (414)
Q Consensus       199 ~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a  278 (414)
                      .|++.+|+..|.+++.    +.|.            ..++.|+|.++.++|++++|+..+.+++.++|+++.+++++|.+
T Consensus       589 ~Gr~~eAl~~~~~AL~----l~P~------------~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~a  652 (987)
T PRK09782        589 PGQPELALNDLTRSLN----IAPS------------ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYA  652 (987)
T ss_pred             CCCHHHHHHHHHHHHH----hCCC------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            3666666666666665    3442            45789999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 015006          279 YMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQE  319 (414)
Q Consensus       279 ~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~  319 (414)
                      +..+|++++|+..|++|++++|++ ..+...+..+......
T Consensus       653 L~~~G~~eeAi~~l~~AL~l~P~~-~~a~~nLA~al~~lGd  692 (987)
T PRK09782        653 LWDSGDIAQSREMLERAHKGLPDD-PALIRQLAYVNQRLDD  692 (987)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCC
Confidence            999999999999999999999998 6788777777655443

>PRK15331 chaperone protein SicA; Provisional

Probab=98.82  E-value=6.7e-08  Score=82.68  Aligned_cols=101  Identities=9%  Similarity=0.157  Sum_probs=89.8

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      .+.+-..|-.+|..|+|.+|...|+-...    .++.+           ...+..+|.|+..+++|++|+..+..|..++
T Consensus        37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~----~d~~n-----------~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~  101 (165)
T PRK15331         37 MDGLYAHAYEFYNQGRLDEAETFFRFLCI----YDFYN-----------PDYTMGLAAVCQLKKQFQKACDLYAVAFTLL  101 (165)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCcCc-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            44566778889999999999999987666    56665           4578999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      ++++...|+.|+|++.+|+.+.|+..|..|+. .|.+
T Consensus       102 ~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~  137 (165)
T PRK15331        102 KNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTED  137 (165)
T ss_pred             cCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-Ccch
Confidence            99999999999999999999999999999998 4554

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.81  E-value=6.2e-08  Score=81.33  Aligned_cols=111  Identities=16%  Similarity=0.163  Sum_probs=90.0

Q ss_pred             HHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 015006          207 AKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFE  286 (414)
Q Consensus       207 ~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~  286 (414)
                      ..|.+++.    ..|.+           ...+.++|.++++.+++.+|+..+.+++.++|.++.+++++|.++..+|+++
T Consensus         4 ~~~~~~l~----~~p~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~   68 (135)
T TIGR02552         4 ATLKDLLG----LDSEQ-----------LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYE   68 (135)
T ss_pred             hhHHHHHc----CChhh-----------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence            35677777    66665           5678899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 015006          287 EAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDK  334 (414)
Q Consensus       287 eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  334 (414)
                      +|+..|+++++++|++ ......+..+........+ ....+......
T Consensus        69 ~A~~~~~~~~~~~p~~-~~~~~~la~~~~~~g~~~~-A~~~~~~al~~  114 (135)
T TIGR02552        69 EAIDAYALAAALDPDD-PRPYFHAAECLLALGEPES-ALKALDLAIEI  114 (135)
T ss_pred             HHHHHHHHHHhcCCCC-hHHHHHHHHHHHHcCCHHH-HHHHHHHHHHh
Confidence            9999999999999997 6777777777655543332 23344444443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.80  E-value=1.6e-07  Score=84.94  Aligned_cols=99  Identities=26%  Similarity=0.369  Sum_probs=77.0

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      .+..+...|..++..|+|.+|+..|.+++.    ..|.+           ..++.++|.++..+|++++|+..+.+++++
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~----~~p~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~   94 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALE----HDPDD-----------YLAYLALALYYQQLGELEKAEDSFRRALTL   94 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCccc-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            366677788888888899999998888887    44544           456777777888888888888888888887


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006          265 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  298 (414)
Q Consensus       265 dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l  298 (414)
                      .|.+..+++++|.++..+|++++|+..|++++..
T Consensus        95 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  128 (234)
T TIGR02521        95 NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIED  128 (234)
T ss_pred             CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence            7777777777787777778888887777777765

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.78  E-value=7.4e-08  Score=97.30  Aligned_cols=119  Identities=19%  Similarity=0.337  Sum_probs=101.1

Q ss_pred             HHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 015006          187 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  266 (414)
Q Consensus       187 ~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp  266 (414)
                      +.|.-.|..|.|+++|+.|.-.|++|+.    ++|.+           ..+.+-++..+.++|+.++|+..+++|+.+||
T Consensus       490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~----INP~n-----------svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~  554 (638)
T KOG1126|consen  490 NAWYGLGTVYLKQEKLEFAEFHFQKAVE----INPSN-----------SVILCHIGRIQHQLKRKDKALQLYEKAIHLDP  554 (638)
T ss_pred             HHHHhhhhheeccchhhHHHHHHHhhhc----CCccc-----------hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC
Confidence            3566778888888888888888888888    78877           66777788889999999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 015006          267 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVE  321 (414)
Q Consensus       267 ~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~  321 (414)
                      .|+-..|.+|..+..+++|++|+..|++.-++-|++ .-+...+.++.+++....
T Consensus       555 kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~e-s~v~~llgki~k~~~~~~  608 (638)
T KOG1126|consen  555 KNPLCKYHRASILFSLGRYVEALQELEELKELVPQE-SSVFALLGKIYKRLGNTD  608 (638)
T ss_pred             CCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcch-HHHHHHHHHHHHHHccch
Confidence            999999999999999999999999999999999986 678888888877776544

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.76  E-value=1.1e-07  Score=101.17  Aligned_cols=105  Identities=18%  Similarity=0.177  Sum_probs=64.8

Q ss_pred             hccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCc
Q 015006          193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRK----SIEACNKVLDANPAH  268 (414)
Q Consensus       193 Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~----A~~~~~~al~~dp~~  268 (414)
                      |..++..|++.+|+..|.+++.    ..|.+           ..++.++|.++..+|++.+    |+..|.++++++|++
T Consensus       219 ~~~l~~~g~~~eA~~~~~~al~----~~p~~-----------~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~  283 (656)
T PRK15174        219 VDTLCAVGKYQEAIQTGESALA----RGLDG-----------AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDN  283 (656)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHh----cCCCC-----------HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCC
Confidence            5566677888888888888877    44544           3455556666666666654    566666666666666


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 015006          269 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  313 (414)
Q Consensus       269 ~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~  313 (414)
                      +.++..+|.++..+|++++|+..|++++.++|++ ..+...+..+
T Consensus       284 ~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~-~~a~~~La~~  327 (656)
T PRK15174        284 VRIVTLYADALIRTGQNEKAIPLLQQSLATHPDL-PYVRAMYARA  327 (656)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHH
Confidence            6666666666666666666666666666666655 3444444433

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.74  E-value=3.4e-08  Score=72.59  Aligned_cols=67  Identities=28%  Similarity=0.489  Sum_probs=60.2

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 015006          245 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK  312 (414)
Q Consensus       245 ~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~  312 (414)
                      +++.|+|.+|+..+++++..+|++..+++.+|.+++..|++++|...|++++..+|++ +.+...+..
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~-~~~~~l~a~   67 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN-PEYQQLLAQ   67 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH-HHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH-HHHHHHHhc
Confidence            3678999999999999999999999999999999999999999999999999999996 666655544

...

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.74  E-value=2.3e-07  Score=87.05  Aligned_cols=107  Identities=11%  Similarity=0.153  Sum_probs=89.3

Q ss_pred             Hhhhccc-cccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Q 015006          190 RVTGNRL-FKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA-  267 (414)
Q Consensus       190 k~~Gn~~-fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~-  267 (414)
                      ...+..+ ++.|+|.+|+..|.+.+.    ..|.+.        ....+++-+|.+|+..|+|++|+..|.+++...|+ 
T Consensus       146 Y~~A~~l~~~~~~y~~Ai~af~~fl~----~yP~s~--------~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s  213 (263)
T PRK10803        146 YNAAIALVQDKSRQDDAIVAFQNFVK----KYPDST--------YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS  213 (263)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH----HCcCCc--------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence            3444444 567999999999999999    455441        22457888999999999999999999999998887 


Q ss_pred             --cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 015006          268 --HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAA  309 (414)
Q Consensus       268 --~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~  309 (414)
                        .+.|++++|.++..+|++++|+..|+++++..|++ ..+...
T Consensus       214 ~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s-~~a~~A  256 (263)
T PRK10803        214 PKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT-DGAKQA  256 (263)
T ss_pred             cchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC-HHHHHH
Confidence              47899999999999999999999999999999997 344433

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.74  E-value=1e-07  Score=92.56  Aligned_cols=126  Identities=18%  Similarity=0.227  Sum_probs=103.2

Q ss_pred             HhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 015006          190 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV  269 (414)
Q Consensus       190 k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~  269 (414)
                      --.||-+--+++.+.|+..|++||+    ++|..           ..++.-+|.=|+.|++-..|+..+.+|++++|.+-
T Consensus       334 CiIaNYYSlr~eHEKAv~YFkRALk----LNp~~-----------~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~Dy  398 (559)
T KOG1155|consen  334 CIIANYYSLRSEHEKAVMYFKRALK----LNPKY-----------LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDY  398 (559)
T ss_pred             eeehhHHHHHHhHHHHHHHHHHHHh----cCcch-----------hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhH
Confidence            3468888888999999999999999    78776           67888889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015006          270 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLF  332 (414)
Q Consensus       270 ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  332 (414)
                      +|||-+|++|.-++...-|+-.|++|+++.|++ +.+...|..|..++....+ ..+.|++..
T Consensus       399 RAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnD-sRlw~aLG~CY~kl~~~~e-AiKCykrai  459 (559)
T KOG1155|consen  399 RAWYGLGQAYEIMKMHFYALYYFQKALELKPND-SRLWVALGECYEKLNRLEE-AIKCYKRAI  459 (559)
T ss_pred             HHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHhccHHH-HHHHHHHHH
Confidence            999999999988888888888899999988886 6788888888766654333 244454444

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.73  E-value=5.9e-08  Score=89.90  Aligned_cols=99  Identities=20%  Similarity=0.318  Sum_probs=82.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 015006          239 LNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  318 (414)
Q Consensus       239 ~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~  318 (414)
                      =+-|.-+++.++|.+|+..|++||+++|.|+--|.+||.||.+||+|+.|+++++.||.+||.. ..+.-.|..+.-.+.
T Consensus        85 K~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y-skay~RLG~A~~~~g  163 (304)
T KOG0553|consen   85 KNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY-SKAYGRLGLAYLALG  163 (304)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH-HHHHHHHHHHHHccC
Confidence            3566777899999999999999999999999999999999999999999999999999999986 567777777766665


Q ss_pred             HHHHHHHHHHHhhccCCCCCc
Q 015006          319 EVESKARKQFKGLFDKKPGEI  339 (414)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~  339 (414)
                      +....... |++.+.-.+...
T Consensus       164 k~~~A~~a-ykKaLeldP~Ne  183 (304)
T KOG0553|consen  164 KYEEAIEA-YKKALELDPDNE  183 (304)
T ss_pred             cHHHHHHH-HHhhhccCCCcH
Confidence            55555444 777777665544

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.71  E-value=2e-07  Score=99.09  Aligned_cols=100  Identities=17%  Similarity=0.234  Sum_probs=90.9

Q ss_pred             HHHhhhccccccccHHH----HHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015006          188 KIRVTGNRLFKEGKFEL----AKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  263 (414)
Q Consensus       188 ~~k~~Gn~~fk~g~y~~----A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~  263 (414)
                      .+...|..++..|++.+    |+..|++++.    +.|.+           ..++.++|.++.++|++++|+..+++++.
T Consensus       248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~----l~P~~-----------~~a~~~lg~~l~~~g~~~eA~~~l~~al~  312 (656)
T PRK15174        248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQ----FNSDN-----------VRIVTLYADALIRTGQNEKAIPLLQQSLA  312 (656)
T ss_pred             HHHHHHHHHHHcCCchhhHHHHHHHHHHHHh----hCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34567888899999986    8999999999    67776           67899999999999999999999999999


Q ss_pred             hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          264 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       264 ~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      ++|+++.+++.+|.++..+|++++|+..|++++..+|++
T Consensus       313 l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~  351 (656)
T PRK15174        313 THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT  351 (656)
T ss_pred             hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            999999999999999999999999999999999999986

>PLN02789 farnesyltranstransferase

Probab=98.71  E-value=3.3e-07  Score=88.54  Aligned_cols=112  Identities=17%  Similarity=0.098  Sum_probs=93.6

Q ss_pred             HHHHhhhccccccc-cHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCH--HHHHHHHHHHHH
Q 015006          187 EKIRVTGNRLFKEG-KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC--RKSIEACNKVLD  263 (414)
Q Consensus       187 ~~~k~~Gn~~fk~g-~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~--~~A~~~~~~al~  263 (414)
                      ..+..+|..+.+.| ++.+|+..+.+++.    .+|.+           ..++++++.++.+++.+  .+++..+.++|+
T Consensus        72 taW~~R~~iL~~L~~~l~eeL~~~~~~i~----~npkn-----------yqaW~~R~~~l~~l~~~~~~~el~~~~kal~  136 (320)
T PLN02789         72 TVWHFRRLCLEALDADLEEELDFAEDVAE----DNPKN-----------YQIWHHRRWLAEKLGPDAANKELEFTRKILS  136 (320)
T ss_pred             HHHHHHHHHHHHcchhHHHHHHHHHHHHH----HCCcc-----------hHHhHHHHHHHHHcCchhhHHHHHHHHHHHH
Confidence            34555666666666 57888888888888    67776           66899999999999874  788999999999


Q ss_pred             hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          264 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       264 ~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                      ++|.|..||+.|+.++..+|+|++|++.+.++|+++|.| ..+......+.
T Consensus       137 ~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N-~sAW~~R~~vl  186 (320)
T PLN02789        137 LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN-NSAWNQRYFVI  186 (320)
T ss_pred             hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc-hhHHHHHHHHH
Confidence            999999999999999999999999999999999999998 45665555543

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.70  E-value=8e-07  Score=82.67  Aligned_cols=125  Identities=25%  Similarity=0.325  Sum_probs=100.1

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +..+-..|..++..|+|..|+..|++.+.    ..|..+        ....+.+++|.+|+++++|.+|+..+++.++..
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~----~yP~s~--------~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~   99 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDN----RYPFGP--------YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN   99 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCh--------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence            44566778888999999999999999999    555552        234567899999999999999999999999999


Q ss_pred             CCc---HHHHHHHHHHHHHcCC------------------HHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHHHHHHHH
Q 015006          266 PAH---VKGLYRRGMAYMALGE------------------FEEAQRDFEMMMKVDKSSE--PDATAALSKLKKQRQEVES  322 (414)
Q Consensus       266 p~~---~ka~~r~g~a~~~l~~------------------~~eA~~~~~~al~l~P~n~--~~~~~~l~~~~~~~~~~~~  322 (414)
                      |++   ..|+|.+|.++..++.                  ...|+..|+..++..|+..  ++++..+..++.++.+.+-
T Consensus       100 P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~  179 (243)
T PRK10866        100 PTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEL  179 (243)
T ss_pred             cCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHH
Confidence            876   5689999999866651                  3578899999999999864  4566666777766665543

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.70  E-value=2.9e-07  Score=97.39  Aligned_cols=115  Identities=12%  Similarity=0.096  Sum_probs=101.0

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +......++.+++.+++++|+..+.+++.    ..|++           ...++++|.|+.++|+|++|+..|++++..+
T Consensus       120 ~~a~~~~a~~L~~~~~~eeA~~~~~~~l~----~~p~~-----------~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~  184 (694)
T PRK15179        120 SEAFILMLRGVKRQQGIEAGRAEIELYFS----GGSSS-----------AREILLEAKSWDEIGQSEQADACFERLSRQH  184 (694)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHhh----cCCCC-----------HHHHHHHHHHHHHhcchHHHHHHHHHHHhcC
Confidence            55677889999999999999999999999    78888           7899999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 015006          266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  315 (414)
Q Consensus       266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~  315 (414)
                      |++++++..+|.+++.+|+.++|...|++|+++..+-.+.....+..+..
T Consensus       185 p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  234 (694)
T PRK15179        185 PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLVDLNA  234 (694)
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999976543333344444443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.70  E-value=3.1e-07  Score=76.89  Aligned_cols=105  Identities=23%  Similarity=0.386  Sum_probs=90.4

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +..+-..|...++.|+|..|++.|+....    .-|..        +....+.++++-+|++.++|..|+..+++-|++.
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~----ryP~g--------~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh   77 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDT----RYPFG--------EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH   77 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHh----cCCCC--------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            55666778888999999999999998887    34443        2234688899999999999999999999999999


Q ss_pred             CCcH---HHHHHHHHHHHHcCC---------------HHHHHHHHHHHHhhCCCC
Q 015006          266 PAHV---KGLYRRGMAYMALGE---------------FEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       266 p~~~---ka~~r~g~a~~~l~~---------------~~eA~~~~~~al~l~P~n  302 (414)
                      |.++   -|+|++|.+++.+..               ...|..+|++.+..-|++
T Consensus        78 P~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S  132 (142)
T PF13512_consen   78 PTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS  132 (142)
T ss_pred             CCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence            9875   589999999999987               889999999999999987

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.69  E-value=3.2e-07  Score=83.51  Aligned_cols=115  Identities=19%  Similarity=0.229  Sum_probs=103.8

Q ss_pred             HHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 015006          187 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  266 (414)
Q Consensus       187 ~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp  266 (414)
                      ..++..|..+|..|+|..|+..+.++..    ..|.+           ..+++-+|.||.++|+++.|...+.+++++.|
T Consensus       101 ~ll~~~gk~~~~~g~~~~A~~~~rkA~~----l~p~d-----------~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~  165 (257)
T COG5010         101 ELLAAQGKNQIRNGNFGEAVSVLRKAAR----LAPTD-----------WEAWNLLGAALDQLGRFDEARRAYRQALELAP  165 (257)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHhc----cCCCC-----------hhhhhHHHHHHHHccChhHHHHHHHHHHHhcc
Confidence            3445589999999999999999999999    88888           66899999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 015006          267 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  317 (414)
Q Consensus       267 ~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~  317 (414)
                      +.+..+-++|..++-.|+++.|...+..+...-+.+ ..+..+|..+-...
T Consensus       166 ~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad-~~v~~NLAl~~~~~  215 (257)
T COG5010         166 NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAAD-SRVRQNLALVVGLQ  215 (257)
T ss_pred             CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHhhc
Confidence            999999999999999999999999999999887766 67888888775443

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.69  E-value=4.5e-07  Score=88.22  Aligned_cols=130  Identities=15%  Similarity=0.219  Sum_probs=110.9

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      ...+--.|-++...++-..|+..|++|++    ++|.+           ..+++-+|.+|--|+...=|+-++++|+.+.
T Consensus       364 ~~aWTLmGHEyvEmKNt~AAi~sYRrAvd----i~p~D-----------yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k  428 (559)
T KOG1155|consen  364 LSAWTLMGHEYVEMKNTHAAIESYRRAVD----INPRD-----------YRAWYGLGQAYEIMKMHFYALYYFQKALELK  428 (559)
T ss_pred             hHHHHHhhHHHHHhcccHHHHHHHHHHHh----cCchh-----------HHHHhhhhHHHHHhcchHHHHHHHHHHHhcC
Confidence            34455678889999999999999999999    77877           7899999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015006          266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLF  332 (414)
Q Consensus       266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  332 (414)
                      |++...|--+|+||.++++.++|+.+|.+|+...-.+ ..+...|.++.+.+...++. .+.|.+..
T Consensus       429 PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte-~~~l~~LakLye~l~d~~eA-a~~yek~v  493 (559)
T KOG1155|consen  429 PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE-GSALVRLAKLYEELKDLNEA-AQYYEKYV  493 (559)
T ss_pred             CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc-hHHHHHHHHHHHHHHhHHHH-HHHHHHHH
Confidence            9999999999999999999999999999999997765 56777888888777765543 33444333

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.67  E-value=1e-07  Score=93.78  Aligned_cols=64  Identities=14%  Similarity=0.197  Sum_probs=61.8

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006          235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG---LYRRGMAYMALGEFEEAQRDFEMMMKV  298 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka---~~r~g~a~~~l~~~~eA~~~~~~al~l  298 (414)
                      ...++|+|.+|+++++|++|+..|++||+++|++..+   ||++|.||..+|++++|+++|++|+++
T Consensus        75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            6799999999999999999999999999999999865   999999999999999999999999997

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.66  E-value=6.5e-07  Score=81.09  Aligned_cols=124  Identities=24%  Similarity=0.347  Sum_probs=96.5

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +..+-..|..+|..|+|.+|+..|++.+..    .|.+        .....+.+.+|.++++.++|..|+..++..+...
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~----~P~s--------~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y   72 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDR----YPNS--------PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY   72 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-----TTS--------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----CCCC--------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            667788999999999999999999999984    3433        2335678899999999999999999999999999


Q ss_pred             CCcH---HHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHHHHHHH
Q 015006          266 PAHV---KGLYRRGMAYMALG-----------EFEEAQRDFEMMMKVDKSSE--PDATAALSKLKKQRQEVE  321 (414)
Q Consensus       266 p~~~---ka~~r~g~a~~~l~-----------~~~eA~~~~~~al~l~P~n~--~~~~~~l~~~~~~~~~~~  321 (414)
                      |.++   .|+|.+|.+++.+.           ...+|+..|+..++..|++.  .+++..+..+...+.+.+
T Consensus        73 P~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e  144 (203)
T PF13525_consen   73 PNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHE  144 (203)
T ss_dssp             TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHH
Confidence            9764   59999999987764           34589999999999999874  456666677766665544

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.65  E-value=7.1e-08  Score=73.04  Aligned_cols=66  Identities=24%  Similarity=0.405  Sum_probs=58.5

Q ss_pred             hhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006          233 KRNLLHLNVAACLLKLGECRKSIEACNKVLDAN-------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  298 (414)
Q Consensus       233 ~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d-------p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l  298 (414)
                      ..+.+++|+|.+|..+|+|++|+.++++++.+.       |..+.+++++|.++..+|++++|++.|++|+++
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            457799999999999999999999999999762       234789999999999999999999999999986

...

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.63  E-value=4.9e-07  Score=86.91  Aligned_cols=114  Identities=24%  Similarity=0.350  Sum_probs=97.7

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhh-hhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVG-KRNLLHLNVAACLLKLGECRKSIEACNKVLD  263 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~-~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~  263 (414)
                      .+..++-+|..++-..+...|+..|+++|+    +.|...+....... -.....-+.|.-.+|.|+|..|.+.|+.+|.
T Consensus       202 n~~al~vrg~~~yy~~~~~ka~~hf~qal~----ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~  277 (486)
T KOG0550|consen  202 NAEALYVRGLCLYYNDNADKAINHFQQALR----LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN  277 (486)
T ss_pred             hhHHHHhcccccccccchHHHHHHHhhhhc----cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc
Confidence            367888999999999999999999999999    78876554433222 2234566788889999999999999999999


Q ss_pred             hCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          264 ANPAH----VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       264 ~dp~~----~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      +||+|    ++.|++||.+...+|+..+|+.++..|++|||.-
T Consensus       278 idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy  320 (486)
T KOG0550|consen  278 IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY  320 (486)
T ss_pred             CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH
Confidence            99975    7889999999999999999999999999999874

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.63  E-value=5.2e-07  Score=97.74  Aligned_cols=112  Identities=11%  Similarity=0.175  Sum_probs=99.9

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +..+...|..+.+.|++.+|+..|.+++.    ..|.+           ..++.++|.++...+++.+|+..+.+++..+
T Consensus        49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~----~~P~~-----------~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~  113 (765)
T PRK10049         49 ARGYAAVAVAYRNLKQWQNSLTLWQKALS----LEPQN-----------DDYQRGLILTLADAGQYDEALVKAKQLVSGA  113 (765)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            44467788889999999999999999999    67877           5577899999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                      |+++. ++.+|.++...|++++|+..|+++++++|++ ..+...+..+.
T Consensus       114 P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~-~~~~~~la~~l  160 (765)
T PRK10049        114 PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQT-QQYPTEYVQAL  160 (765)
T ss_pred             CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence            99999 9999999999999999999999999999998 55655555543

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.62  E-value=5.5e-07  Score=101.92  Aligned_cols=123  Identities=18%  Similarity=0.296  Sum_probs=96.5

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHH---HHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG---KVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  262 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~---~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al  262 (414)
                      +..+...|..+++.|++++|+..|++++.    ..|.+....   ..+......+..+++.++++.+++++|+..+.+++
T Consensus       303 ~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~----~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al  378 (1157)
T PRK11447        303 SEALGALGQAYSQQGDRARAVAQFEKALA----LDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQAR  378 (1157)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            34456778888888888888888888888    455442111   11111223345677899999999999999999999


Q ss_pred             HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 015006          263 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  313 (414)
Q Consensus       263 ~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~  313 (414)
                      .++|.++.+++.+|.++..+|++++|++.|+++++++|++ ..+...+..+
T Consensus       379 ~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~-~~a~~~L~~l  428 (1157)
T PRK11447        379 QVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGN-TNAVRGLANL  428 (1157)
T ss_pred             HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHH
Confidence            9999999999999999999999999999999999999998 4555555444

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.61  E-value=6.5e-07  Score=80.08  Aligned_cols=104  Identities=19%  Similarity=0.276  Sum_probs=92.1

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +.-+++-|..++.+|+|++|...|.+|+.     .|.-.        .....+.|++.|.+++|+++.|..+++++|+++
T Consensus       103 GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-----~P~Y~--------~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d  169 (250)
T COG3063         103 GDVLNNYGAFLCAQGRPEEAMQQFERALA-----DPAYG--------EPSDTLENLGLCALKAGQFDQAEEYLKRALELD  169 (250)
T ss_pred             cchhhhhhHHHHhCCChHHHHHHHHHHHh-----CCCCC--------CcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC
Confidence            56688999999999999999999999998     33221        124589999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      |+++-++.-+++.++..|+|-.|...+++...--+-+
T Consensus       170 p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~  206 (250)
T COG3063         170 PQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQ  206 (250)
T ss_pred             cCCChHHHHHHHHHHhcccchHHHHHHHHHHhccccc
Confidence            9999999999999999999999999999988776654

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.60  E-value=9.2e-07  Score=87.85  Aligned_cols=112  Identities=16%  Similarity=0.125  Sum_probs=76.0

Q ss_pred             hhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 015006          191 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK  270 (414)
Q Consensus       191 ~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~k  270 (414)
                      ..+..+.+.|+|.+|+..|.+++.    ..|.+..      .....++.++|.++++.+++++|+..+.++++.+|.+..
T Consensus       146 ~la~~~~~~g~~~~A~~~~~~~~~----~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  215 (389)
T PRK11788        146 QLLEIYQQEKDWQKAIDVAERLEK----LGGDSLR------VEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVR  215 (389)
T ss_pred             HHHHHHHHhchHHHHHHHHHHHHH----hcCCcch------HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHH
Confidence            344444455555555555555544    2221100      012345678888888889999999999999888888888


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 015006          271 GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK  312 (414)
Q Consensus       271 a~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~  312 (414)
                      +++.+|.++...|++++|+..|++++..+|.+...+...+..
T Consensus       216 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~  257 (389)
T PRK11788        216 ASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLME  257 (389)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHH
Confidence            888899999999999999999999888888753333333433

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.60  E-value=1.7e-07  Score=92.31  Aligned_cols=109  Identities=24%  Similarity=0.277  Sum_probs=96.4

Q ss_pred             hhhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHc---CCHHHHH
Q 015006          179 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL---GECRKSI  255 (414)
Q Consensus       179 ~~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl---~~~~~A~  255 (414)
                      +-+..+.++.++.+||..|-.+....|+..|.+++.+    .|..           ..+|.|+|++++|.   ++--.|+
T Consensus       367 ~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~----~~~~-----------~~~l~nraa~lmkRkW~~d~~~Al  431 (758)
T KOG1310|consen  367 FYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQY----VPDA-----------IYLLENRAAALMKRKWRGDSYLAL  431 (758)
T ss_pred             hhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhh----ccch-----------hHHHHhHHHHHHhhhccccHHHHH
Confidence            3577778999999999999999999999999999984    3333           77999999999986   4677899


Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          256 EACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       256 ~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      .+|..||+++|...||+||++.|+..++++.+|+.+...+....|.+
T Consensus       432 rDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd  478 (758)
T KOG1310|consen  432 RDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTD  478 (758)
T ss_pred             HhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchh
Confidence            99999999999999999999999999999999999877766677754

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.58  E-value=1.4e-07  Score=68.71  Aligned_cols=64  Identities=17%  Similarity=0.400  Sum_probs=57.1

Q ss_pred             hhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 015006          191 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV  269 (414)
Q Consensus       191 ~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~  269 (414)
                      ..|..+++.|+|.+|+..|++++.    ..|.+           ..+++.+|.|++.+|++++|+..+.++++++|+++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~----~~P~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALK----QDPDN-----------PEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHC----CSTTH-----------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            468889999999999999999999    66766           67999999999999999999999999999999875

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.57  E-value=1.2e-06  Score=95.38  Aligned_cols=113  Identities=25%  Similarity=0.409  Sum_probs=94.2

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      .+..+...|..++..|+|.+|+..|.+++.    ..|.+           ..++..+|.+++..++|.+|+..+.+++..
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~----~~~~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  188 (899)
T TIGR02917       124 AAELLALRGLAYLGLGQLELAQKSYEQALA----IDPRS-----------LYAKLGLAQLALAENRFDEARALIDEVLTA  188 (899)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCC-----------hhhHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            466777899999999999999999999998    56655           457788888899999999999999999998


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 015006          265 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  313 (414)
Q Consensus       265 dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~  313 (414)
                      +|.+..+++.+|.++...|++++|+..|++++.++|.+ ..+...+..+
T Consensus       189 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~~~~~~  236 (899)
T TIGR02917       189 DPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNN-PAVLLALATI  236 (899)
T ss_pred             CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHH
Confidence            99888999999999999999999999999999998887 4444444433

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.57  E-value=1.2e-06  Score=99.14  Aligned_cols=120  Identities=17%  Similarity=0.185  Sum_probs=96.4

Q ss_pred             HHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHH-------------------------------Hhhhhh
Q 015006          187 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKV-------------------------------FVGKRN  235 (414)
Q Consensus       187 ~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~-------------------------------~~~~~~  235 (414)
                      ..+...|..++..|++.+|+..|.+++.    ..|.+......                               ...+..
T Consensus       386 ~a~~~Lg~~~~~~g~~~eA~~~y~~aL~----~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~  461 (1157)
T PRK11447        386 YAVLGLGDVAMARKDYAAAERYYQQALR----MDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQN  461 (1157)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence            3456678899999999999999999998    55554321100                               011123


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 015006          236 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS  311 (414)
Q Consensus       236 ~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~  311 (414)
                      ..+.++|.++...+++++|+..++++++++|+++.+++++|.++..+|++++|+..|+++++++|++ ..+...+.
T Consensus       462 ~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~-~~~~~a~a  536 (1157)
T PRK11447        462 DRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPND-PEQVYAYG  536 (1157)
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHH
Confidence            3566788999999999999999999999999999999999999999999999999999999999987 45544443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.56  E-value=2.6e-07  Score=87.92  Aligned_cols=117  Identities=24%  Similarity=0.272  Sum_probs=95.2

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +..+...|..+.+.|++.+|+..|++|++    ..|.+           ..+..+++.+++.+|++.++...+.......
T Consensus       146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~----~~P~~-----------~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~  210 (280)
T PF13429_consen  146 ARFWLALAEIYEQLGDPDKALRDYRKALE----LDPDD-----------PDARNALAWLLIDMGDYDEAREALKRLLKAA  210 (280)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHHH----H-TT------------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCC-----------HHHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence            45577888899999999999999999999    78877           4577788999999999999888888888888


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 015006          266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  318 (414)
Q Consensus       266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~  318 (414)
                      |.++..+..+|.++..+|++++|+..|+++++.+|+| +.+...+..+.....
T Consensus       211 ~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d-~~~~~~~a~~l~~~g  262 (280)
T PF13429_consen  211 PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD-PLWLLAYADALEQAG  262 (280)
T ss_dssp             HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHT---
T ss_pred             cCHHHHHHHHHHHhccccccccccccccccccccccc-ccccccccccccccc
Confidence            8888888999999999999999999999999999997 667777776654443

>PLN02789 farnesyltranstransferase

Probab=98.55  E-value=1.7e-06  Score=83.67  Aligned_cols=108  Identities=15%  Similarity=0.128  Sum_probs=93.9

Q ss_pred             ccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHH
Q 015006          196 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG-ECRKSIEACNKVLDANPAHVKGLYR  274 (414)
Q Consensus       196 ~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~-~~~~A~~~~~~al~~dp~~~ka~~r  274 (414)
                      +.+.+.+.+|+..+.++|.    ++|.+           .+++.+++.++.+++ .+.+++..+++++..+|++..+|+.
T Consensus        47 l~~~e~serAL~lt~~aI~----lnP~~-----------ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~  111 (320)
T PLN02789         47 YASDERSPRALDLTADVIR----LNPGN-----------YTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHH  111 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHH----HCchh-----------HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHH
Confidence            4566789999999999999    78877           789999999999998 6899999999999999999999999


Q ss_pred             HHHHHHHcCCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 015006          275 RGMAYMALGEF--EEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQE  319 (414)
Q Consensus       275 ~g~a~~~l~~~--~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~  319 (414)
                      |+.++..+++.  ++++..+.++++++|.| -.+.....-+...+..
T Consensus       112 R~~~l~~l~~~~~~~el~~~~kal~~dpkN-y~AW~~R~w~l~~l~~  157 (320)
T PLN02789        112 RRWLAEKLGPDAANKELEFTRKILSLDAKN-YHAWSHRQWVLRTLGG  157 (320)
T ss_pred             HHHHHHHcCchhhHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHhhh
Confidence            99999999974  78899999999999998 5666666665555443

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.54  E-value=1.5e-06  Score=94.70  Aligned_cols=129  Identities=14%  Similarity=0.236  Sum_probs=102.9

Q ss_pred             HHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 015006          188 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  267 (414)
Q Consensus       188 ~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~  267 (414)
                      .+...|..++..|+|.+|+..|.+++.    ..|.+            ..+.+++.++.++|++.+|+..+.++++.+|+
T Consensus       705 ~~~~~~~~~~~~g~~~~A~~~~~~~~~----~~~~~------------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~  768 (899)
T TIGR02917       705 GFELEGDLYLRQKDYPAAIQAYRKALK----RAPSS------------QNAIKLHRALLASGNTAEAVKTLEAWLKTHPN  768 (899)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHh----hCCCc------------hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            345577888899999999999999998    44443            35678899999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 015006          268 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKK  335 (414)
Q Consensus       268 ~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  335 (414)
                      ++.+++.+|.++..+|++++|+..|+++++.+|++ ..+...+..+......  .+....+.+.+...
T Consensus       769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~~--~~A~~~~~~~~~~~  833 (899)
T TIGR02917       769 DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDN-AVVLNNLAWLYLELKD--PRALEYAEKALKLA  833 (899)
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCc--HHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999987 5666666666554443  23455555555543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.53  E-value=1.3e-06  Score=75.62  Aligned_cols=101  Identities=28%  Similarity=0.316  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCcHHH
Q 015006          202 FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL----------GECRKSIEACNKVLDANPAHVKG  271 (414)
Q Consensus       202 y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl----------~~~~~A~~~~~~al~~dp~~~ka  271 (414)
                      |+.|.+.|.....    .+|.+           ...++|-|.+++.+          ..+++|+.-++.||.++|+...|
T Consensus         7 FE~ark~aea~y~----~nP~D-----------adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdA   71 (186)
T PF06552_consen    7 FEHARKKAEAAYA----KNPLD-----------ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDA   71 (186)
T ss_dssp             HHHHHHHHHHHHH----H-TT------------HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred             HHHHHHHHHHHHH----hCcHh-----------HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHH
Confidence            6678888888777    57776           45666666666555          34778899999999999999999


Q ss_pred             HHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 015006          272 LYRRGMAYMALGE-----------FEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  318 (414)
Q Consensus       272 ~~r~g~a~~~l~~-----------~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~  318 (414)
                      ++.+|+||..++.           |++|..+|++|...+|+| ...+..|....+.-.
T Consensus        72 lw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n-e~Y~ksLe~~~kap~  128 (186)
T PF06552_consen   72 LWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN-ELYRKSLEMAAKAPE  128 (186)
T ss_dssp             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHhhHH
Confidence            9999999998755           789999999999999998 677777777754433

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5

Probab=98.53  E-value=9.4e-08  Score=75.30  Aligned_cols=42  Identities=24%  Similarity=0.273  Sum_probs=38.3

Q ss_pred             ccccCCcCcEEEEEEcCCCcCCCCC--CCCCCCCCeeeEEEEee
Q 015006            2 GIGTMTREEKAVIYVTSQYLTPSPL--MPVVEGCEEVHFEVELV   43 (414)
Q Consensus         2 ~~~~m~~Ge~~~~~i~~~~~~g~~~--~~~ip~~~~l~~~vel~   43 (414)
                      ||.+|++||++.|.|||++|||..+  ++.||++++|+|+|+|+
T Consensus        51 al~~m~~Ge~~~~~vp~~~ayg~~~~~~~~ip~~~~l~f~Iell   94 (94)
T PF00254_consen   51 ALIGMKVGEKREFYVPPELAYGEKGLEPPKIPPNSTLVFEIELL   94 (94)
T ss_dssp             HHTTSBTTEEEEEEEEGGGTTTTTTBCTTTBTTTSEEEEEEEEE
T ss_pred             hcccccCCCEeeeEeCChhhcCccccCCCCcCCCCeEEEEEEEC
Confidence            6889999999999999999999854  45699999999999996

2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.53  E-value=2.3e-06  Score=64.98  Aligned_cols=82  Identities=27%  Similarity=0.435  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 015006          237 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  316 (414)
Q Consensus       237 ~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~  316 (414)
                      +++++|.+++..+++.+|+..+.++++..|.+..+++.+|.++...+++++|+..|++++.+.|.+ ..+...+..+...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~   80 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN-AKAYYNLGLAYYK   80 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-hhHHHHHHHHHHH
Confidence            578899999999999999999999999999999999999999999999999999999999999987 4555555555544


Q ss_pred             HHH
Q 015006          317 RQE  319 (414)
Q Consensus       317 ~~~  319 (414)
                      ...
T Consensus        81 ~~~   83 (100)
T cd00189          81 LGK   83 (100)
T ss_pred             HHh
Confidence            443

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.52  E-value=2.1e-06  Score=79.28  Aligned_cols=122  Identities=15%  Similarity=0.172  Sum_probs=96.5

Q ss_pred             HHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHc--------CCHHHHHHHH
Q 015006          187 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL--------GECRKSIEAC  258 (414)
Q Consensus       187 ~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl--------~~~~~A~~~~  258 (414)
                      ..+...|..+++.|+|..|+..|.++++    ..|.+..        ...+++++|.|++++        +++..|+..+
T Consensus        71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~----~~p~~~~--------~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~  138 (235)
T TIGR03302        71 QAQLDLAYAYYKSGDYAEAIAAADRFIR----LHPNHPD--------ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAF  138 (235)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHH----HCcCCCc--------hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence            3456789999999999999999999999    5555421        123678899999887        8899999999


Q ss_pred             HHHHHhCCCcHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHHHHH
Q 015006          259 NKVLDANPAHVKGL-----------------YRRGMAYMALGEFEEAQRDFEMMMKVDKSSE--PDATAALSKLKKQRQE  319 (414)
Q Consensus       259 ~~al~~dp~~~ka~-----------------~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~--~~~~~~l~~~~~~~~~  319 (414)
                      .+++..+|++..++                 +.+|..++..|++.+|+..|+++++..|++.  ..+...+..+...+..
T Consensus       139 ~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~  218 (235)
T TIGR03302       139 QELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGL  218 (235)
T ss_pred             HHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC
Confidence            99999999986442                 4678899999999999999999999988752  3455566666555444


Q ss_pred             H
Q 015006          320 V  320 (414)
Q Consensus       320 ~  320 (414)
                      .
T Consensus       219 ~  219 (235)
T TIGR03302       219 K  219 (235)
T ss_pred             H
Confidence            3

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.51  E-value=2.7e-06  Score=84.50  Aligned_cols=131  Identities=18%  Similarity=0.209  Sum_probs=100.0

Q ss_pred             HHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 015006          187 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  266 (414)
Q Consensus       187 ~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp  266 (414)
                      ..+...|..+++.|++.+|+..|.+++.    ..|..           ..+++++|.++.+.|++++|+..+.+++..+|
T Consensus       181 ~~~~~la~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p  245 (389)
T PRK11788        181 HFYCELAQQALARGDLDAARALLKKALA----ADPQC-----------VRASILLGDLALAQGDYAAAIEALERVEEQDP  245 (389)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHh----HCcCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh
Confidence            3455678888899999999999999998    45544           45788899999999999999999999999998


Q ss_pred             Cc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 015006          267 AH-VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKK  335 (414)
Q Consensus       267 ~~-~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  335 (414)
                      .+ ..++..++.+|..+|++++|+..+++++++.|++ ..+ ..+..+....... +.....+..++...
T Consensus       246 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~-~~~-~~la~~~~~~g~~-~~A~~~l~~~l~~~  312 (389)
T PRK11788        246 EYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA-DLL-LALAQLLEEQEGP-EAAQALLREQLRRH  312 (389)
T ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-hHH-HHHHHHHHHhCCH-HHHHHHHHHHHHhC
Confidence            76 4678899999999999999999999999999986 333 3444443332222 22344455455443

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.50  E-value=9.4e-07  Score=89.60  Aligned_cols=145  Identities=19%  Similarity=0.202  Sum_probs=113.1

Q ss_pred             hhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015006          182 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV  261 (414)
Q Consensus       182 ~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~a  261 (414)
                      ....+..++..|+.+...++|.+|+..|.+|+.++..+...+       ++..+.++.|||.+|.+.|+|++|..+|++|
T Consensus       237 hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~-------h~~va~~l~nLa~ly~~~GKf~EA~~~~e~A  309 (508)
T KOG1840|consen  237 HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED-------HPAVAATLNNLAVLYYKQGKFAEAEEYCERA  309 (508)
T ss_pred             CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence            344566677899999999999999999999999887665555       5566889999999999999999999999999


Q ss_pred             HHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCC--HHHHHHHHHHHHHHHHHHHHHHHH
Q 015006          262 LDAN--------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD-----KSS--EPDATAALSKLKKQRQEVESKARK  326 (414)
Q Consensus       262 l~~d--------p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~-----P~n--~~~~~~~l~~~~~~~~~~~~~~~~  326 (414)
                      +++-        |.-...+...+.++..++++++|+..|++++++-     +.|  .+.++.+|..+.....+.++. ..
T Consensus       310 l~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea-~~  388 (508)
T KOG1840|consen  310 LEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEA-EE  388 (508)
T ss_pred             HHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHH-HH
Confidence            9774        3346788899999999999999999999999872     222  245667777776665544433 33


Q ss_pred             HHHhhccC
Q 015006          327 QFKGLFDK  334 (414)
Q Consensus       327 ~~~~~~~~  334 (414)
                      ++++...+
T Consensus       389 ~~k~ai~~  396 (508)
T KOG1840|consen  389 LYKKAIQI  396 (508)
T ss_pred             HHHHHHHH
Confidence            44444433

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.50  E-value=1.4e-06  Score=85.83  Aligned_cols=82  Identities=18%  Similarity=0.182  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 015006          238 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  317 (414)
Q Consensus       238 ~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~  317 (414)
                      +...|..++..++|..|+..+.+||+++|+++.+|+.+|.+|..+|++++|+.+|++|+.++|++ ..+...+..+...+
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~-~~a~~~lg~~~~~l   83 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL-AKAYLRKGTACMKL   83 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHh
Confidence            45578889999999999999999999999999999999999999999999999999999999998 66777777665554


Q ss_pred             HHH
Q 015006          318 QEV  320 (414)
Q Consensus       318 ~~~  320 (414)
                      .+.
T Consensus        84 g~~   86 (356)
T PLN03088         84 EEY   86 (356)
T ss_pred             CCH
Confidence            433

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.49  E-value=3e-06  Score=74.19  Aligned_cols=110  Identities=14%  Similarity=0.156  Sum_probs=88.5

Q ss_pred             hhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---
Q 015006          192 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH---  268 (414)
Q Consensus       192 ~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~---  268 (414)
                      ..+.+|-.+.|..+...+...++    ....         .....+++++|.++..+++|++|+..+.+++.+.|+.   
T Consensus         5 ~~~~~~~~~~~~~~~~~l~~~~~----~~~~---------~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~   71 (168)
T CHL00033          5 QRNDNFIDKTFTIVADILLRILP----TTSG---------EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDR   71 (168)
T ss_pred             cccccccccccccchhhhhHhcc----CCch---------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhh
Confidence            45677777778888777755544    2222         2246789999999999999999999999999987653   


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 015006          269 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  315 (414)
Q Consensus       269 ~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~  315 (414)
                      +-+++++|.++..+|++++|+..|++|+.++|.+ ......+..+..
T Consensus        72 ~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~-~~~~~~la~i~~  117 (168)
T CHL00033         72 SYILYNIGLIHTSNGEHTKALEYYFQALERNPFL-PQALNNMAVICH  117 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHH
Confidence            4589999999999999999999999999999987 556666665554

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.49  E-value=1.8e-06  Score=73.68  Aligned_cols=97  Identities=15%  Similarity=0.077  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 015006          236 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  315 (414)
Q Consensus       236 ~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~  315 (414)
                      ...+-+|.-++..|++++|...+..++.+||.++..||.+|.++..+|+|.+|+..|.+|+.++|++ +....++..|.-
T Consensus        36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd-p~~~~~ag~c~L  114 (157)
T PRK15363         36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA-PQAPWAAAECYL  114 (157)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-chHHHHHHHHHH
Confidence            4556688889999999999999999999999999999999999999999999999999999999998 678888888876


Q ss_pred             HHHHHHHHHHHHHHhhccC
Q 015006          316 QRQEVESKARKQFKGLFDK  334 (414)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~  334 (414)
                      .+.+... .++.|+..+..
T Consensus       115 ~lG~~~~-A~~aF~~Ai~~  132 (157)
T PRK15363        115 ACDNVCY-AIKALKAVVRI  132 (157)
T ss_pred             HcCCHHH-HHHHHHHHHHH
Confidence            6654433 34445444443

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.48  E-value=9.1e-07  Score=90.84  Aligned_cols=102  Identities=24%  Similarity=0.333  Sum_probs=95.1

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHH--HHHHHHH
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIE--ACNKVLD  263 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~--~~~~al~  263 (414)
                      +..+...|..+..+|++.+|...|..|+.    ++|.+           ..+..-+|.|+++.|+..-|..  ....+++
T Consensus       684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~----ldP~h-----------v~s~~Ala~~lle~G~~~la~~~~~L~dalr  748 (799)
T KOG4162|consen  684 ASVYYLRGLLLEVKGQLEEAKEAFLVALA----LDPDH-----------VPSMTALAELLLELGSPRLAEKRSLLSDALR  748 (799)
T ss_pred             HHHHHHhhHHHHHHHhhHHHHHHHHHHHh----cCCCC-----------cHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence            55678889999999999999999999999    88888           6788889999999999888887  9999999


Q ss_pred             hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          264 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       264 ~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      +||.|.+|||.+|.++..+|+.++|.++|..|+++++++
T Consensus       749 ~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~  787 (799)
T KOG4162|consen  749 LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN  787 (799)
T ss_pred             hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence            999999999999999999999999999999999999887

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.47  E-value=2.1e-06  Score=93.04  Aligned_cols=100  Identities=11%  Similarity=0.076  Sum_probs=93.1

Q ss_pred             HHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 015006          188 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  267 (414)
Q Consensus       188 ~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~  267 (414)
                      .+...|..+...|++.+|+..+.+++.    ..|.+           ..+++++|.++...|++++|+..+++++.++|+
T Consensus       361 a~~~~a~~l~~~g~~~eA~~~l~~al~----~~P~n-----------~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd  425 (765)
T PRK10049        361 GQSLLSQVAKYSNDLPQAEMRARELAY----NAPGN-----------QGLRIDYASVLQARGWPRAAENELKKAEVLEPR  425 (765)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Confidence            344567777889999999999999999    67877           569999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          268 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       268 ~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      +..+++.+|.+++.+++|++|...++++++.+|++
T Consensus       426 ~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~  460 (765)
T PRK10049        426 NINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQD  460 (765)
T ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999999999999998

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.46  E-value=3e-07  Score=81.36  Aligned_cols=133  Identities=21%  Similarity=0.232  Sum_probs=111.3

Q ss_pred             CCCCcceEEEEEEcccCCCCCCCCCchhhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhh
Q 015006          153 VPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVG  232 (414)
Q Consensus       153 ip~~~~l~~eieL~~~~~~~~~~~~~~~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~  232 (414)
                      +|-..++.-+|.+..+...-....++.+++   |.-+.++|+.+=..|-+..|..-|+++|.    +.|.-         
T Consensus        35 ~~~qp~lqqEV~iarlsqlL~~~~l~~eeR---A~l~fERGvlYDSlGL~~LAR~DftQaLa----i~P~m---------   98 (297)
T COG4785          35 VPLQPTLQQEVILARMSQILASRALTDEER---AQLLFERGVLYDSLGLRALARNDFSQALA----IRPDM---------   98 (297)
T ss_pred             ccCCccHHHHHHHHHHHHHHHhccCChHHH---HHHHHHhcchhhhhhHHHHHhhhhhhhhh----cCCCc---------
Confidence            444444555555544433323345565554   88899999999999999999999999999    67765         


Q ss_pred             hhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 015006          233 KRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  303 (414)
Q Consensus       233 ~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~  303 (414)
                        ..+++-+|.-+...++|+.|.+.++.++++||.+--|+.+||.+++.-|+|.-|.++|.+-..-||+++
T Consensus        99 --~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DP  167 (297)
T COG4785          99 --PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP  167 (297)
T ss_pred             --HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCCh
Confidence              668888999999999999999999999999999999999999999999999999999999999999873

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.43  E-value=5.5e-07  Score=66.07  Aligned_cols=67  Identities=27%  Similarity=0.397  Sum_probs=58.4

Q ss_pred             ccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 015006          196 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRR  275 (414)
Q Consensus       196 ~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~  275 (414)
                      +++.|+|.+|+..|++++.    ..|.+           ..+++++|.||++.|++++|...+.+++..+|+++..+.-+
T Consensus         1 ll~~~~~~~A~~~~~~~l~----~~p~~-----------~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~   65 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQ----RNPDN-----------PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL   65 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHH----HTTTS-----------HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            3578999999999999999    67777           66888999999999999999999999999999987777666


Q ss_pred             HH
Q 015006          276 GM  277 (414)
Q Consensus       276 g~  277 (414)
                      ++
T Consensus        66 a~   67 (68)
T PF14559_consen   66 AQ   67 (68)
T ss_dssp             HH
T ss_pred             hc
Confidence            54

...

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.41  E-value=4.6e-06  Score=67.75  Aligned_cols=100  Identities=25%  Similarity=0.362  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--HHHHHHH
Q 015006          236 LLHLNVAACLLKLGECRKSIEACNKVLDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE--PDATAAL  310 (414)
Q Consensus       236 ~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~---~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~--~~~~~~l  310 (414)
                      ..++++|.++++.++|.+|+..|.+++...|++   ..+++.+|.++...|++++|+..|++++..+|++.  ..+...+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~   82 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence            467889999999999999999999999999877   67999999999999999999999999999999862  3445555


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCC
Q 015006          311 SKLKKQRQEVESKARKQFKGLFDKKP  336 (414)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (414)
                      ..+....... ......+...+...+
T Consensus        83 ~~~~~~~~~~-~~A~~~~~~~~~~~p  107 (119)
T TIGR02795        83 GMSLQELGDK-EKAKATLQQVIKRYP  107 (119)
T ss_pred             HHHHHHhCCh-HHHHHHHHHHHHHCc
Confidence            5554433322 223345555554443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.39  E-value=2.4e-06  Score=72.93  Aligned_cols=95  Identities=21%  Similarity=0.370  Sum_probs=54.1

Q ss_pred             HHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 015006          189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  268 (414)
Q Consensus       189 ~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~  268 (414)
                      ....|..++..|+|++|+..|..++.    ..++.        .+...+.+++|.+++.+++|++|+..+..+ .-.+-.
T Consensus        51 ~l~lA~~~~~~g~~~~A~~~l~~~~~----~~~d~--------~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~  117 (145)
T PF09976_consen   51 ALQLAKAAYEQGDYDEAKAALEKALA----NAPDP--------ELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFK  117 (145)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHh----hCCCH--------HHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchH
Confidence            34455666666666666666666665    22111        123345566666666666666666666442 222334


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015006          269 VKGLYRRGMAYMALGEFEEAQRDFEMMM  296 (414)
Q Consensus       269 ~ka~~r~g~a~~~l~~~~eA~~~~~~al  296 (414)
                      +.++..+|.++...|++++|+..|++||
T Consensus       118 ~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  118 ALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            4556666666666666666666666653

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.38  E-value=8e-07  Score=67.19  Aligned_cols=72  Identities=22%  Similarity=0.292  Sum_probs=60.7

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      .+..+...|..++..|+|.+|+..|++|+.+.....+ +       ....+.++.|+|.|+..+|++++|+.++++|+++
T Consensus         4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-~-------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD-D-------HPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT-H-------HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC-C-------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            5778899999999999999999999999997443322 2       2334789999999999999999999999999876

...

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.37  E-value=4.4e-06  Score=87.90  Aligned_cols=118  Identities=16%  Similarity=0.192  Sum_probs=100.7

Q ss_pred             HHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 015006          187 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  266 (414)
Q Consensus       187 ~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp  266 (414)
                      ..+.-.+|.+|-.|+|..+...+..|+..-     .       ...+.+..++++|.||..+|+|++|..+|.+++..+|
T Consensus       271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~t-----~-------~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~  338 (1018)
T KOG2002|consen  271 VALNHLANHFYFKKDYERVWHLAEHAIKNT-----E-------NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADN  338 (1018)
T ss_pred             HHHHHHHHHHhhcccHHHHHHHHHHHHHhh-----h-------hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCC
Confidence            345667888899999999999999888731     1       1234466799999999999999999999999999999


Q ss_pred             Cc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 015006          267 AH-VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  317 (414)
Q Consensus       267 ~~-~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~  317 (414)
                      ++ +-+++.+|+.++..|+++.|+.+|+++++..|+| .+....|.-+....
T Consensus       339 d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~-~etm~iLG~Lya~~  389 (1018)
T KOG2002|consen  339 DNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNN-YETMKILGCLYAHS  389 (1018)
T ss_pred             CCccccccchhHHHHHhchHHHHHHHHHHHHHhCcch-HHHHHHHHhHHHhh
Confidence            98 9999999999999999999999999999999998 56777777665544

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.36  E-value=5.1e-06  Score=73.08  Aligned_cols=81  Identities=16%  Similarity=0.272  Sum_probs=70.5

Q ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 015006          234 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAAL  310 (414)
Q Consensus       234 ~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~---~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l  310 (414)
                      ...+++++|.++...|+|++|+.+|.+++.+.|+.   +.+++.+|.++..+|++++|+..|.+|+.++|.+ ......+
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l  112 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ-PSALNNI  112 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-HHHHHHH
Confidence            46689999999999999999999999999987653   5799999999999999999999999999999987 5555555


Q ss_pred             HHHHH
Q 015006          311 SKLKK  315 (414)
Q Consensus       311 ~~~~~  315 (414)
                      ..+..
T Consensus       113 g~~~~  117 (172)
T PRK02603        113 AVIYH  117 (172)
T ss_pred             HHHHH
Confidence            55543

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.36  E-value=6.8e-06  Score=76.73  Aligned_cols=103  Identities=20%  Similarity=0.307  Sum_probs=91.0

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcC---CHHHHHHHHHHHH
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG---ECRKSIEACNKVL  262 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~---~~~~A~~~~~~al  262 (414)
                      ++.+--.|..++..|++..|...|.+|++    +.|++           ..++.-+|.+++...   .-.++...++++|
T Consensus       156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~r----L~g~n-----------~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al  220 (287)
T COG4235         156 AEGWDLLGRAYMALGRASDALLAYRNALR----LAGDN-----------PEILLGLAEALYYQAGQQMTAKARALLRQAL  220 (287)
T ss_pred             chhHHHHHHHHHHhcchhHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence            56688899999999999999999999999    78888           446666676666553   4678899999999


Q ss_pred             HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 015006          263 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  303 (414)
Q Consensus       263 ~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~  303 (414)
                      .+||.|+.+++-+|..++..|+|.+|+..+++.|.+.|.+.
T Consensus       221 ~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~  261 (287)
T COG4235         221 ALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD  261 (287)
T ss_pred             hcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence            99999999999999999999999999999999999999874

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.35  E-value=3.2e-06  Score=82.05  Aligned_cols=112  Identities=17%  Similarity=0.183  Sum_probs=93.7

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +..+-+.||..|..|+|++|...|+.||.    -+.           .-..+++|++..+-++|+.++|+.++-+.-.+-
T Consensus       490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~----nda-----------sc~ealfniglt~e~~~~ldeald~f~klh~il  554 (840)
T KOG2003|consen  490 AAALTNKGNIAFANGDLDKAAEFYKEALN----NDA-----------SCTEALFNIGLTAEALGNLDEALDCFLKLHAIL  554 (840)
T ss_pred             HHHhhcCCceeeecCcHHHHHHHHHHHHc----Cch-----------HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH
Confidence            45677899999999999999999999998    111           114578999999999999999999998876666


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 015006          266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  313 (414)
Q Consensus       266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~  313 (414)
                      -+|+..++.+|.+|..+.+-.+|++.|.+|..+-|++ +.+...|..+
T Consensus       555 ~nn~evl~qianiye~led~aqaie~~~q~~slip~d-p~ilskl~dl  601 (840)
T KOG2003|consen  555 LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPND-PAILSKLADL  601 (840)
T ss_pred             HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCC-HHHHHHHHHH
Confidence            6899999999999999999999999999999999987 5555555543

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.34  E-value=6.4e-06  Score=76.00  Aligned_cols=106  Identities=17%  Similarity=0.302  Sum_probs=91.9

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      ++.+.+.+-.+++.|+|..|...|..-+.-+    |.+        .....+++=|+.|++.+|+|.+|...|..+.+-.
T Consensus       141 ~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y----P~s--------~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~  208 (262)
T COG1729         141 ATKLYNAALDLYKSGDYAEAEQAFQAFIKKY----PNS--------TYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY  208 (262)
T ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCC--------cccchhHHHHHHHHHhcccchHHHHHHHHHHHhC
Confidence            4447788899999999999999999999844    333        1224577779999999999999999999999998


Q ss_pred             CCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 015006          266 PAHV---KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  303 (414)
Q Consensus       266 p~~~---ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~  303 (414)
                      |+++   .++|.+|.+...+|+-++|...|+++++--|...
T Consensus       209 P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~  249 (262)
T COG1729         209 PKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTD  249 (262)
T ss_pred             CCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence            8764   5699999999999999999999999999999973

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.32  E-value=2.5e-06  Score=63.44  Aligned_cols=69  Identities=26%  Similarity=0.467  Sum_probs=61.9

Q ss_pred             ccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 015006          194 NRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLY  273 (414)
Q Consensus       194 n~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~  273 (414)
                      +.+++.++|..|+..+.+++.    +.|.+           ..++.++|.|+.++|+|.+|+.+++++++..|+++.+..
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~----~~p~~-----------~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~   67 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALE----LDPDD-----------PELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA   67 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHH----hCccc-----------chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence            467889999999999999999    67776           779999999999999999999999999999999988876


Q ss_pred             HHHH
Q 015006          274 RRGM  277 (414)
Q Consensus       274 r~g~  277 (414)
                      -++.
T Consensus        68 ~~a~   71 (73)
T PF13371_consen   68 LRAM   71 (73)
T ss_pred             HHHh
Confidence            5553

>TIGR00115 tig trigger factor

Probab=98.32  E-value=3.4e-06  Score=84.77  Aligned_cols=86  Identities=14%  Similarity=0.258  Sum_probs=71.2

Q ss_pred             CCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCCeEEEEecCCCccccCCCCCCC
Q 015006           74 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANV  153 (414)
Q Consensus        74 p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~~i  153 (414)
                      +..||.|+|+|+|+.   +|..| +++   ...++.|.+|.+.+++||+.+|.+|++|+...|.++....|+....    
T Consensus       147 ~~~gD~V~v~~~~~~---dg~~~-~~~---~~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~----  215 (408)
T TIGR00115       147 AEKGDRVTIDFEGFI---DGEAF-EGG---KAENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL----  215 (408)
T ss_pred             cCCCCEEEEEEEEEE---CCEEC-cCC---CCCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccC----
Confidence            367999999999975   37777 433   3568999999999999999999999999999999986556665443    


Q ss_pred             CCCcceEEEEEEcccCCC
Q 015006          154 PEGAHIQWEIELLGFEKP  171 (414)
Q Consensus       154 p~~~~l~~eieL~~~~~~  171 (414)
                       .|.++.|.|++.++...
T Consensus       216 -~gk~~~f~v~i~~I~~~  232 (408)
T TIGR00115       216 -AGKEATFKVTVKEVKEK  232 (408)
T ss_pred             -CCCeEEEEEEEEEeccC
Confidence             57889999999998764

Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.

>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=98.32  E-value=6.1e-07  Score=83.99  Aligned_cols=45  Identities=16%  Similarity=0.307  Sum_probs=42.5

Q ss_pred             ccccCCcCcEEEEEEcCCCcCCCCCCCCCCCCCeeeEEEEeeEEE
Q 015006            2 GIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLI   46 (414)
Q Consensus         2 ~~~~m~~Ge~~~~~i~~~~~~g~~~~~~ip~~~~l~~~vel~~~~   46 (414)
                      ||..|++|+++.|.|||+++||..+.++||||++|+|+|+|+++.
T Consensus       205 aL~~Mk~Gek~~l~IP~~laYG~~g~~gIppns~LvfeVeLl~V~  249 (269)
T PRK10902        205 GLKNIKKGGKIKLVIPPELAYGKAGVPGIPANSTLVFDVELLDVK  249 (269)
T ss_pred             HHhcCCCCcEEEEEECchhhCCCCCCCCCCCCCcEEEEEEEEEec
Confidence            689999999999999999999998888999999999999999875

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.32  E-value=1.5e-05  Score=83.34  Aligned_cols=125  Identities=19%  Similarity=0.308  Sum_probs=95.6

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHh-------hhhh----------------HHHHHH
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFV-------GKRN----------------LLHLNV  241 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~-------~~~~----------------~~~~N~  241 (414)
                      .+..+..++|.+|.+|++.+|.+.+..+|+    .+|.+......+-       ++..                ..|.-+
T Consensus       138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIk----qdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~l  213 (895)
T KOG2076|consen  138 ELRQLLGEANNLFARGDLEEAEEILMEVIK----QDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRL  213 (895)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----hCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHH
Confidence            377888999999999999999999999999    5666543221110       0111                234445


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 015006          242 AACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  315 (414)
Q Consensus       242 a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~  315 (414)
                      |.-..+++++.+|+-+|.+||..+|.+.+-+++++..|.++|++..|...|.+++.++|.  .+....+..+..
T Consensus       214 adls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~--~d~er~~d~i~~  285 (895)
T KOG2076|consen  214 ADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPP--VDIERIEDLIRR  285 (895)
T ss_pred             HHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc--hhHHHHHHHHHH
Confidence            555667888999999999999999999999999999999999999999999999999994  344444444443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.27  E-value=1.5e-05  Score=65.60  Aligned_cols=97  Identities=18%  Similarity=0.139  Sum_probs=82.2

Q ss_pred             HHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Q 015006          189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA-  267 (414)
Q Consensus       189 ~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~-  267 (414)
                      ..+.|..+-..|+..+|+..|.+|+.    .....        ..+..++.++|.++..+|++++|+..+++++.-.|+ 
T Consensus         4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~----~gL~~--------~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~   71 (120)
T PF12688_consen    4 LYELAWAHDSLGREEEAIPLYRRALA----AGLSG--------ADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDD   71 (120)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCc--------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Confidence            45667777888999999999999998    32222        123568889999999999999999999999998887 


Q ss_pred             --cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015006          268 --HVKGLYRRGMAYMALGEFEEAQRDFEMMMK  297 (414)
Q Consensus       268 --~~ka~~r~g~a~~~l~~~~eA~~~~~~al~  297 (414)
                        +.....-.+.++..+|+.++|+..+..++.
T Consensus        72 ~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   72 ELNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence              777778889999999999999999988775

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=98.26  E-value=1.6e-05  Score=63.69  Aligned_cols=106  Identities=20%  Similarity=0.365  Sum_probs=82.1

Q ss_pred             HhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Q 015006          190 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA-----  264 (414)
Q Consensus       190 k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~-----  264 (414)
                      ...|...+..|-|.+|...|++|+..-..+.+....+..-|   -.-||.-++.++.++|+|++++..+.++|.+     
T Consensus        13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GF---DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRG   89 (144)
T PF12968_consen   13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGF---DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRG   89 (144)
T ss_dssp             HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHH---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccH---HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcc
Confidence            35666777889999999999999998776665543333332   2568889999999999999999999999954     


Q ss_pred             --CC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006          265 --NP----AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  298 (414)
Q Consensus       265 --dp----~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l  298 (414)
                        +.    .++.+.|++|.++..+|+.++|+..|+++-++
T Consensus        90 EL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   90 ELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             -TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             ccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence              22    36889999999999999999999999998765

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.25  E-value=4.2e-06  Score=78.38  Aligned_cols=82  Identities=20%  Similarity=0.328  Sum_probs=72.9

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 015006          235 NLLHLNVAACLLKLGECRKSIEACNKVLDANP---AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS  311 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp---~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~  311 (414)
                      ..+++|+|.|.+-.++|+-++..+.+|+..--   .-+..||++|.+....|++..|..+|+-||..||+| .++..+|.
T Consensus       358 peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h-~ealnNLa  436 (478)
T KOG1129|consen  358 PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH-GEALNNLA  436 (478)
T ss_pred             hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch-HHHHHhHH
Confidence            45899999999999999999999999987642   357889999999999999999999999999999998 77888888


Q ss_pred             HHHHHH
Q 015006          312 KLKKQR  317 (414)
Q Consensus       312 ~~~~~~  317 (414)
                      .++.+.
T Consensus       437 vL~~r~  442 (478)
T KOG1129|consen  437 VLAARS  442 (478)
T ss_pred             HHHhhc
Confidence            886543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.22  E-value=2e-05  Score=85.13  Aligned_cols=149  Identities=10%  Similarity=0.008  Sum_probs=108.0

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHH-----------------HHHHh------hhhhHHHHHHH
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEE-----------------GKVFV------GKRNLLHLNVA  242 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e-----------------~~~~~------~~~~~~~~N~a  242 (414)
                      +......+...++.|+|..|+..|.++++    ..|.+...                 ...+.      ......+..+|
T Consensus        34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~----~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA  109 (822)
T PRK14574         34 ADTQYDSLIIRARAGDTAPVLDYLQEESK----AGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAA  109 (822)
T ss_pred             hhHHHHHHHHHHhCCCHHHHHHHHHHHHh----hCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHH
Confidence            44566778888999999999999999998    45554211                 00011      11123444557


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 015006          243 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVES  322 (414)
Q Consensus       243 ~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~  322 (414)
                      .++..+|+|.+|+..++++++.+|+++.+++-++.++..+++.++|+..+++++..+|.+ ... ..+..+..... ...
T Consensus       110 ~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~-~~~-l~layL~~~~~-~~~  186 (822)
T PRK14574        110 RAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTV-QNY-MTLSYLNRATD-RNY  186 (822)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcch-HHH-HHHHHHHHhcc-hHH
Confidence            789999999999999999999999999999999999999999999999999999999986 333 33444433322 222


Q ss_pred             HHHHHHHhhccCCCCCccc
Q 015006          323 KARKQFKGLFDKKPGEISE  341 (414)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~  341 (414)
                      +.-..+++++...+...+-
T Consensus       187 ~AL~~~ekll~~~P~n~e~  205 (822)
T PRK14574        187 DALQASSEAVRLAPTSEEV  205 (822)
T ss_pred             HHHHHHHHHHHhCCCCHHH
Confidence            3677888888887665533

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.22  E-value=2.2e-06  Score=53.74  Aligned_cols=33  Identities=30%  Similarity=0.632  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015006          269 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  301 (414)
Q Consensus       269 ~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~  301 (414)
                      +++|+++|.++..+|++++|+.+|++||+++|+
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            356777777777777777777777777777775

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.21  E-value=4e-06  Score=81.40  Aligned_cols=98  Identities=18%  Similarity=0.333  Sum_probs=87.8

Q ss_pred             HhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 015006          190 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV  269 (414)
Q Consensus       190 k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~  269 (414)
                      .+.||.+|++.+|.+|++.|+.||...+.+.          ..+++.++.|++..+.++|+|+.|+..+..+++..| |.
T Consensus       241 mnigni~~kkr~fskaikfyrmaldqvpsin----------k~~rikil~nigvtfiq~gqy~dainsfdh~m~~~p-n~  309 (840)
T KOG2003|consen  241 MNIGNIHFKKREFSKAIKFYRMALDQVPSIN----------KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAP-NF  309 (840)
T ss_pred             eeecceeeehhhHHHHHHHHHHHHhhccccc----------hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCc-cH
Confidence            3789999999999999999999999543332          457789999999999999999999999999999998 56


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006          270 KGLYRRGMAYMALGEFEEAQRDFEMMMKV  298 (414)
Q Consensus       270 ka~~r~g~a~~~l~~~~eA~~~~~~al~l  298 (414)
                      ++-+++-.|++..|+-+.-.+.|++.+.+
T Consensus       310 ~a~~nl~i~~f~i~d~ekmkeaf~kli~i  338 (840)
T KOG2003|consen  310 IAALNLIICAFAIGDAEKMKEAFQKLIDI  338 (840)
T ss_pred             HhhhhhhhhheecCcHHHHHHHHHHHhcC
Confidence            77789999999999999999999999876

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.18  E-value=2.9e-05  Score=70.88  Aligned_cols=78  Identities=18%  Similarity=0.264  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 015006          237 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  315 (414)
Q Consensus       237 ~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~  315 (414)
                      ++.-.+..++..|+|..|+..+.++..++|+++++|.-+|-+|.++|++++|...|.+|+++.|++ +.+..++.-..-
T Consensus       102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~-p~~~nNlgms~~  179 (257)
T COG5010         102 LLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNE-PSIANNLGMSLL  179 (257)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCC-chhhhhHHHHHH
Confidence            444488999999999999999999999999999999999999999999999999999999999987 566666665543

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.18  E-value=3.8e-05  Score=75.69  Aligned_cols=89  Identities=17%  Similarity=0.126  Sum_probs=76.9

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                      ..+..-++..+++.++.++|++.+.+++.++|+..-..+.+|++|++.|++.+|+..++..+.-+|++ +.....|.+..
T Consensus       340 ~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d-p~~w~~LAqay  418 (484)
T COG4783         340 PYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED-PNGWDLLAQAY  418 (484)
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC-chHHHHHHHHH
Confidence            44556678889999999999999999999999999999999999999999999999999999999998 78888888887


Q ss_pred             HHHHHHHHHH
Q 015006          315 KQRQEVESKA  324 (414)
Q Consensus       315 ~~~~~~~~~~  324 (414)
                      ..+....+..
T Consensus       419 ~~~g~~~~a~  428 (484)
T COG4783         419 AELGNRAEAL  428 (484)
T ss_pred             HHhCchHHHH
Confidence            6665444433

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.15  E-value=2.8e-05  Score=76.69  Aligned_cols=109  Identities=28%  Similarity=0.318  Sum_probs=89.2

Q ss_pred             hhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 015006          192 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG  271 (414)
Q Consensus       192 ~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka  271 (414)
                      .|..+++.+++.+|++.+++++.    +.|..           ..+..|+|.++++.|++.+|+...+..+.-+|+++..
T Consensus       346 ~~~i~~~~nk~~~A~e~~~kal~----l~P~~-----------~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~  410 (484)
T COG4783         346 AGDILLEANKAKEAIERLKKALA----LDPNS-----------PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNG  410 (484)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHh----cCCCc-----------cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchH
Confidence            34455667777777777777777    55554           5688999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 015006          272 LYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  316 (414)
Q Consensus       272 ~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~  316 (414)
                      |..+|++|..+|+-.+|...+-.++.+...- ..+...+...+++
T Consensus       411 w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~-~~A~~~l~~A~~~  454 (484)
T COG4783         411 WDLLAQAYAELGNRAEALLARAEGYALAGRL-EQAIIFLMRASQQ  454 (484)
T ss_pred             HHHHHHHHHHhCchHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHh
Confidence            9999999999999999999998888887764 4455555555443

>PRK01490 tig trigger factor; Provisional

Probab=98.15  E-value=1.2e-05  Score=81.60  Aligned_cols=86  Identities=14%  Similarity=0.208  Sum_probs=69.3

Q ss_pred             CCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCCeEEEEecCCCccccCCCCCCC
Q 015006           74 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANV  153 (414)
Q Consensus        74 p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~~i  153 (414)
                      +..||.|+|+|.|..   +|..|. +.   ...++.|.+|.+.+++||+.+|.+|++|+...|.++.-..|+....    
T Consensus       158 ~~~gD~V~vd~~~~~---~g~~~~-~~---~~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l----  226 (435)
T PRK01490        158 AENGDRVTIDFVGSI---DGEEFE-GG---KAEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL----  226 (435)
T ss_pred             CCCCCEEEEEEEEEE---CCEECc-CC---CCCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccC----
Confidence            468999999999996   377773 33   3568999999999999999999999999999988865444544332    


Q ss_pred             CCCcceEEEEEEcccCCC
Q 015006          154 PEGAHIQWEIELLGFEKP  171 (414)
Q Consensus       154 p~~~~l~~eieL~~~~~~  171 (414)
                       .|.+..|.|+|.++...
T Consensus       227 -agk~~~f~v~v~~V~~~  243 (435)
T PRK01490        227 -AGKEATFKVTVKEVKEK  243 (435)
T ss_pred             -CCCeEEEEEEEEEeccC
Confidence             56789999999998764

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.13  E-value=1.7e-05  Score=80.64  Aligned_cols=109  Identities=17%  Similarity=0.209  Sum_probs=94.3

Q ss_pred             HHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015006          184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  263 (414)
Q Consensus       184 ~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~  263 (414)
                      ..|..+.+.|..+++.|+|.+|..+|.+|+++.......+       .......++|+++.+..+++|++|+..+.++++
T Consensus       281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~-------~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~  353 (508)
T KOG1840|consen  281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGAS-------HPEVAAQLSELAAILQSMNEYEEAKKLLQKALK  353 (508)
T ss_pred             HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccC-------hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence            3588899999999999999999999999999877633333       334567899999999999999999999999987


Q ss_pred             hC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015006          264 AN--------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  299 (414)
Q Consensus       264 ~d--------p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~  299 (414)
                      +-        +.-++-+-++|.+|..+|+|++|.+.|++|+.+.
T Consensus       354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~  397 (508)
T KOG1840|consen  354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL  397 (508)
T ss_pred             HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence            63        2447889999999999999999999999999874

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.11  E-value=1.2e-05  Score=84.00  Aligned_cols=102  Identities=22%  Similarity=0.321  Sum_probs=88.7

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      .+.-+.+.+..+...|+|.+|+..|..++.    ..+..          ..-+|.++|.||..++.|++|+..+.+||.+
T Consensus       413 ~~dL~~d~a~al~~~~~~~~Al~~l~~i~~----~~~~~----------~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~  478 (895)
T KOG2076|consen  413 DVDLYLDLADALTNIGKYKEALRLLSPITN----REGYQ----------NAFVWYKLARCYMELGEYEEAIEFYEKVLIL  478 (895)
T ss_pred             hHHHHHHHHHHHHhcccHHHHHHHHHHHhc----Ccccc----------chhhhHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            355677888888899999999999999887    33322          1568999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 015006          265 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK  300 (414)
Q Consensus       265 dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P  300 (414)
                      +|++..+...++..+..+|+.++|++.+.....-||
T Consensus       479 ~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~  514 (895)
T KOG2076|consen  479 APDNLDARITLASLYQQLGNHEKALETLEQIINPDG  514 (895)
T ss_pred             CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCc
Confidence            999999999999999999999999999988764443

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.09  E-value=3.7e-05  Score=83.08  Aligned_cols=101  Identities=10%  Similarity=0.110  Sum_probs=79.8

Q ss_pred             ccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 015006          200 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAY  279 (414)
Q Consensus       200 g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~  279 (414)
                      |+|..|+..|++++.    ..|.+           ..++.-++.++..++++.+|+..+.+++..+|.+... .-++.++
T Consensus       116 gdyd~Aiely~kaL~----~dP~n-----------~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~  179 (822)
T PRK14574        116 KRWDQALALWQSSLK----KDPTN-----------PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLN  179 (822)
T ss_pred             CCHHHHHHHHHHHHh----hCCCC-----------HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHH
Confidence            789999999999999    78887           4466678999999999999999999999999985444 3345555


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 015006          280 MALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  317 (414)
Q Consensus       280 ~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~  317 (414)
                      ..++++.+|++.|+++++++|++ .++...+..+....
T Consensus       180 ~~~~~~~~AL~~~ekll~~~P~n-~e~~~~~~~~l~~~  216 (822)
T PRK14574        180 RATDRNYDALQASSEAVRLAPTS-EEVLKNHLEILQRN  216 (822)
T ss_pred             HhcchHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHc
Confidence            55777777999999999999998 45554554444433

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.08  E-value=3e-05  Score=81.78  Aligned_cols=129  Identities=22%  Similarity=0.308  Sum_probs=108.2

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      .+-+++.|-.+|..|++..|...|.+|+..+......+  +.   .....++.+|+|.|+=.++++..|...|..++...
T Consensus       452 ~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~d--e~---~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh  526 (1018)
T KOG2002|consen  452 PEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKD--EG---KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH  526 (1018)
T ss_pred             HHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcc--cc---ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence            55688999999999999999999999999643221111  11   23447789999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 015006          266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEV  320 (414)
Q Consensus       266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~  320 (414)
                      |..+.++.|+|......++..+|...++.++.++..| +.++..+..+..+..+.
T Consensus       527 p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~n-p~arsl~G~~~l~k~~~  580 (1018)
T KOG2002|consen  527 PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSN-PNARSLLGNLHLKKSEW  580 (1018)
T ss_pred             chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCC-cHHHHHHHHHHHhhhhh
Confidence            9999999999977777789999999999999999998 78999999776555443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.08  E-value=3.4e-05  Score=75.67  Aligned_cols=112  Identities=21%  Similarity=0.165  Sum_probs=90.0

Q ss_pred             HHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHH--------------------HHH------hhhhhHHHHH
Q 015006          187 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG--------------------KVF------VGKRNLLHLN  240 (414)
Q Consensus       187 ~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~--------------------~~~------~~~~~~~~~N  240 (414)
                      +....+|..++..|++..|...+.+++.    ..|.+..-.                    +.+      ......++.+
T Consensus        44 e~~~~~a~~~~~~g~~~~A~~~~~~~l~----~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  119 (355)
T cd05804          44 ERAHVEALSAWIAGDLPKALALLEQLLD----DYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGM  119 (355)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHH
Confidence            3344678888999999999999999988    344433110                    001      0111235678


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          241 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       241 ~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      +|.++..+|++.+|+..+.++++++|+++.++..+|.++...|++++|+..|++++...|.+
T Consensus       120 ~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~  181 (355)
T cd05804         120 LAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS  181 (355)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC
Confidence            89999999999999999999999999999999999999999999999999999999998753

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.08  E-value=8.7e-06  Score=50.78  Aligned_cols=34  Identities=35%  Similarity=0.612  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          269 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       269 ~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      +++++.+|.+++.+|+|++|+..|+++++++|+|
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            4678888888888888888888888888888875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.08  E-value=4.2e-05  Score=75.60  Aligned_cols=69  Identities=29%  Similarity=0.374  Sum_probs=61.2

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      .+..+.+.|+.+++.|+|++|+..|++||.    ++|.+.+        ...+|+|+|.||.++|++++|+.++.+||++
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe----L~Pd~ae--------A~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALE----LNPNPDE--------AQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCCCchH--------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            478888999999999999999999999999    7887722        0146999999999999999999999999998


Q ss_pred             C
Q 015006          265 N  265 (414)
Q Consensus       265 d  265 (414)
                      .
T Consensus       142 s  142 (453)
T PLN03098        142 Y  142 (453)
T ss_pred             c
Confidence            3

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.07  E-value=4.6e-05  Score=71.59  Aligned_cols=102  Identities=20%  Similarity=0.231  Sum_probs=78.2

Q ss_pred             HHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH--HHHHH
Q 015006          236 LLHLNVAACL-LKLGECRKSIEACNKVLDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP--DATAA  309 (414)
Q Consensus       236 ~~~~N~a~~~-~kl~~~~~A~~~~~~al~~dp~~---~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~--~~~~~  309 (414)
                      ...++.|.++ ++.++|++|+..|...+...|++   +.|+|++|.+|+..|+|++|+..|+++++..|++..  ++...
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            5677888887 67899999999999999999988   589999999999999999999999999999998732  33333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 015006          310 LSKLKKQRQEVESKARKQFKGLFDKKPGE  338 (414)
Q Consensus       310 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (414)
                      +..+...+ ....+.+..|..+....++.
T Consensus       223 lg~~~~~~-g~~~~A~~~~~~vi~~yP~s  250 (263)
T PRK10803        223 VGVIMQDK-GDTAKAKAVYQQVIKKYPGT  250 (263)
T ss_pred             HHHHHHHc-CCHHHHHHHHHHHHHHCcCC
Confidence            34443332 23444566666666655543

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=98.03  E-value=1.5e-05  Score=82.71  Aligned_cols=115  Identities=30%  Similarity=0.519  Sum_probs=102.2

Q ss_pred             CchhhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHc--CCHHHH
Q 015006          177 LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL--GECRKS  254 (414)
Q Consensus       177 ~~~~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl--~~~~~A  254 (414)
                      .+....+..+..++.+||.+|.+++|..|...|..++.++    |.+       +...+.++.|++.|++.+  ++|..+
T Consensus        44 ~di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~ll----p~~-------~~~~a~~~~~~~s~~m~~~l~~~~~~  112 (748)
T KOG4151|consen   44 EDIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLL----PKD-------HHVVATLRSNQASCYMQLGLGEYPKA  112 (748)
T ss_pred             cchHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheec----ccc-------chhhhhHHHHHHHHHhhcCccchhhh
Confidence            3556677889999999999999999999999999999954    433       233478999999998865  689999


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          255 IEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       255 ~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      +..|.-|+...|...+++++|+.+|..++.++-|++++.-...++|.+
T Consensus       113 ~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~  160 (748)
T KOG4151|consen  113 IPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSN  160 (748)
T ss_pred             cCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            999999999999999999999999999999999999999999999998

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.03  E-value=6.3e-06  Score=51.71  Aligned_cols=33  Identities=24%  Similarity=0.466  Sum_probs=31.3

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 015006          258 CNKVLDANPAHVKGLYRRGMAYMALGEFEEAQR  290 (414)
Q Consensus       258 ~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~  290 (414)
                      |++||+++|+|+.+|+++|.+|...|++++|++
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            789999999999999999999999999999973

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.03  E-value=0.0003  Score=59.88  Aligned_cols=109  Identities=17%  Similarity=0.096  Sum_probs=83.2

Q ss_pred             HHhhhccccccccHHHHHHHHHHHHhhcccCC-----C--CChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015006          189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVN-----P--QDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV  261 (414)
Q Consensus       189 ~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~-----p--~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~a  261 (414)
                      +...|......++...++..|.+++..+..-.     .  .-......++.....+...++.++...|++..|+..|.++
T Consensus         9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~   88 (146)
T PF03704_consen    9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA   88 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            34445555667788999999999998664321     1  1112334566677788889999999999999999999999


Q ss_pred             HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015006          262 LDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK  297 (414)
Q Consensus       262 l~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~  297 (414)
                      +.++|-+..++..+-.+|..+|+..+|+..|.++..
T Consensus        89 l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   89 LALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999988754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=98.02  E-value=3.9e-05  Score=74.14  Aligned_cols=113  Identities=12%  Similarity=0.262  Sum_probs=90.4

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccC----CCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV----NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK  260 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~----~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~  260 (414)
                      +.......|...|++++|..|+-.|..||++|...    .|...+. .....+..-+...+..||+++++.+.|+.+..+
T Consensus       175 wl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~-~di~~vaSfIetklv~CYL~~rkpdlALnh~hr  253 (569)
T PF15015_consen  175 WLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASA-EDISSVASFIETKLVTCYLRMRKPDLALNHSHR  253 (569)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCh-hhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhh
Confidence            45555567889999999999999999999987542    2222211 112233345677899999999999999999999


Q ss_pred             HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006          261 VLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  298 (414)
Q Consensus       261 al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l  298 (414)
                      .|.++|.+..-++|+|.++..+.+|.+|-..+.-|.-+
T Consensus       254 sI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ym  291 (569)
T PF15015_consen  254 SINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYM  291 (569)
T ss_pred             hhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998887766543

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.01  E-value=3.3e-05  Score=79.26  Aligned_cols=113  Identities=15%  Similarity=0.201  Sum_probs=95.2

Q ss_pred             HhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 015006          190 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV  269 (414)
Q Consensus       190 k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~  269 (414)
                      ...|+-.+..++|.+|.++++.+++    ++|-.           ...|++++.|.++++++..|..+|..++.++|++.
T Consensus       489 r~~~~~~~~~~~fs~~~~hle~sl~----~nplq-----------~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~  553 (777)
T KOG1128|consen  489 RSLALLILSNKDFSEADKHLERSLE----INPLQ-----------LGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNA  553 (777)
T ss_pred             HhhccccccchhHHHHHHHHHHHhh----cCccc-----------hhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCch
Confidence            4455666778999999999999998    55443           67899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 015006          270 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  318 (414)
Q Consensus       270 ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~  318 (414)
                      .+|-+++.+|+.+++-.+|...++.|++-+-.| -.+..+...+.-...
T Consensus       554 eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~-w~iWENymlvsvdvg  601 (777)
T KOG1128|consen  554 EAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH-WQIWENYMLVSVDVG  601 (777)
T ss_pred             hhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC-Ceeeechhhhhhhcc
Confidence            999999999999999999999999999998665 345555555544433

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.00  E-value=5.1e-05  Score=74.41  Aligned_cols=99  Identities=17%  Similarity=0.242  Sum_probs=86.1

Q ss_pred             HHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 015006          187 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  266 (414)
Q Consensus       187 ~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp  266 (414)
                      ..+...|..+...|++.+|...|++++.    ..|.+           ..++.++|.+++..|++++|+..+.+++...|
T Consensus       115 ~~~~~~a~~~~~~G~~~~A~~~~~~al~----~~p~~-----------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~  179 (355)
T cd05804         115 YLLGMLAFGLEEAGQYDRAEEAARRALE----LNPDD-----------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD  179 (355)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCCCC-----------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence            3444667788899999999999999999    67776           56889999999999999999999999999887


Q ss_pred             Cc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 015006          267 AH----VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK  300 (414)
Q Consensus       267 ~~----~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P  300 (414)
                      .+    ...++.+|.++..+|++++|+..|++++...|
T Consensus       180 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         180 CSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             CCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            43    24567899999999999999999999988777

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.99  E-value=1.3e-05  Score=50.08  Aligned_cols=33  Identities=18%  Similarity=0.430  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 015006          236 LLHLNVAACLLKLGECRKSIEACNKVLDANPAH  268 (414)
Q Consensus       236 ~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~  268 (414)
                      .+|+|+|.||+.+++|++|+.+|++||+++|++
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            479999999999999999999999999999975

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.98  E-value=0.00011  Score=75.59  Aligned_cols=113  Identities=15%  Similarity=0.143  Sum_probs=86.6

Q ss_pred             HHHHHhhhccccccc---cHHHHHHHHHHHHhhcccCCCCChH---------------------HHHH-H----------
Q 015006          186 AEKIRVTGNRLFKEG---KFELAKAKYEKVLRDFNHVNPQDDE---------------------EGKV-F----------  230 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g---~y~~A~~~Y~~al~~~~~~~p~~~~---------------------e~~~-~----------  230 (414)
                      |-.+.-+|..++..+   .+..|+.+|++|+.    ++|.+..                     .... .          
T Consensus       339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~----ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~  414 (517)
T PRK10153        339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILK----SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALP  414 (517)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcc
Confidence            344556676666544   48899999999998    4554311                     1000 0          


Q ss_pred             -hhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 015006          231 -VGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  303 (414)
Q Consensus       231 -~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~  303 (414)
                       ......+|.-+|..+...|++++|...+++|+.++| ++.+|..+|.++...|++++|++.|++|+.++|.++
T Consensus       415 ~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p  487 (517)
T PRK10153        415 ELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN  487 (517)
T ss_pred             cCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence             011124566778888889999999999999999999 588999999999999999999999999999999863

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.98  E-value=0.00013  Score=68.45  Aligned_cols=141  Identities=14%  Similarity=0.206  Sum_probs=105.1

Q ss_pred             CCchhhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhh----------cccC-CCCChHHHH-------------HHh
Q 015006          176 GLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRD----------FNHV-NPQDDEEGK-------------VFV  231 (414)
Q Consensus       176 ~~~~~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~----------~~~~-~p~~~~e~~-------------~~~  231 (414)
                      +++++++   ...+.+.|..|+..|-|+.|...|...+..          +-.+ .-..+++..             ...
T Consensus       100 dlT~~qr---~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~  176 (389)
T COG2956         100 DLTFEQR---LLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYR  176 (389)
T ss_pred             CCchHHH---HHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccch
Confidence            3455544   556778888888888888888888765541          0000 000011110             011


Q ss_pred             hhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 015006          232 GKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS  311 (414)
Q Consensus       232 ~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~  311 (414)
                      -..+..|+-+|..++-..+.+.|+....+|+..||.++.|-.-+|.+++..|+|..|++.++.+++.||+--..+...|.
T Consensus       177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~  256 (389)
T COG2956         177 VEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLY  256 (389)
T ss_pred             hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence            22356899999999999999999999999999999999999999999999999999999999999999987677777777


Q ss_pred             HHHHHHHH
Q 015006          312 KLKKQRQE  319 (414)
Q Consensus       312 ~~~~~~~~  319 (414)
                      .+...+.+
T Consensus       257 ~~Y~~lg~  264 (389)
T COG2956         257 ECYAQLGK  264 (389)
T ss_pred             HHHHHhCC
Confidence            77665543

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=97.98  E-value=3.6e-05  Score=73.10  Aligned_cols=118  Identities=19%  Similarity=0.282  Sum_probs=86.1

Q ss_pred             HhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 015006          190 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV  269 (414)
Q Consensus       190 k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~  269 (414)
                      ......++..+++..+...+.++.....  .+.+           ..++.-+|.++.+.|++++|+..+.+||+++|++.
T Consensus       114 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~--~~~~-----------~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~  180 (280)
T PF13429_consen  114 LSALQLYYRLGDYDEAEELLEKLEELPA--APDS-----------ARFWLALAEIYEQLGDPDKALRDYRKALELDPDDP  180 (280)
T ss_dssp             ----H-HHHTT-HHHHHHHHHHHHH-T-----T------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-H
T ss_pred             hHHHHHHHHHhHHHHHHHHHHHHHhccC--CCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence            3344456677889999988888775110  1222           56788899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 015006          270 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVE  321 (414)
Q Consensus       270 ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~  321 (414)
                      .++..++.++..+|++++|.+.+....+..|++ +.+...+..+...+.+..
T Consensus       181 ~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~-~~~~~~la~~~~~lg~~~  231 (280)
T PF13429_consen  181 DARNALAWLLIDMGDYDEAREALKRLLKAAPDD-PDLWDALAAAYLQLGRYE  231 (280)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTS-CCHCHHHHHHHHHHT-HH
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCH-HHHHHHHHHHhccccccc
Confidence            999999999999999999998888888887776 456666776666555433

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.95  E-value=2.4e-05  Score=60.05  Aligned_cols=74  Identities=26%  Similarity=0.412  Sum_probs=60.7

Q ss_pred             cCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 015006          248 LGECRKSIEACNKVLDANPA--HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESK  323 (414)
Q Consensus       248 l~~~~~A~~~~~~al~~dp~--~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~  323 (414)
                      .++|+.|+..++++++.+|.  +...++.+|.||+.+|+|++|+..+++ ++.+|.+ ..+...+.++.-.+.+..+.
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~-~~~~~l~a~~~~~l~~y~eA   77 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN-PDIHYLLARCLLKLGKYEEA   77 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH-HHHHHHHHHHHHHTT-HHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC-HHHHHHHHHHHHHhCCHHHH
Confidence            58899999999999999995  577888999999999999999999999 8888876 56777777776666555544

>PRK11906 transcriptional regulator; Provisional

Probab=97.94  E-value=0.00016  Score=71.65  Aligned_cols=77  Identities=17%  Similarity=0.042  Sum_probs=65.5

Q ss_pred             hHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 015006          235 NLLHLNVAACLLKL---------GECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPD  305 (414)
Q Consensus       235 ~~~~~N~a~~~~kl---------~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~  305 (414)
                      +.+|.-+|.||+..         ..-.+|+..+.+|+++||.++.|++.+|.++...++++.|...|++|+.++|+. +.
T Consensus       295 a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~-A~  373 (458)
T PRK11906        295 TECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDI-AS  373 (458)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCcc-HH
Confidence            67888888888765         235678889999999999999999999999999999999999999999999997 56


Q ss_pred             HHHHHHH
Q 015006          306 ATAALSK  312 (414)
Q Consensus       306 ~~~~l~~  312 (414)
                      +......
T Consensus       374 ~~~~~~~  380 (458)
T PRK11906        374 LYYYRAL  380 (458)
T ss_pred             HHHHHHH
Confidence            6655554

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.91  E-value=7.9e-05  Score=74.75  Aligned_cols=91  Identities=11%  Similarity=0.084  Sum_probs=80.8

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                      ..++.-||..|+-.++|++|+.+|+.||..+|++..-|-|+|-++..-.+.++|+..|.+||+|.|.. ..++.+|....
T Consensus       430 pdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y-VR~RyNlgIS~  508 (579)
T KOG1125|consen  430 PDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY-VRVRYNLGISC  508 (579)
T ss_pred             hhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe-eeeehhhhhhh
Confidence            45788899999999999999999999999999999999999999999999999999999999999997 56888888876


Q ss_pred             HHHHHHHHHHHH
Q 015006          315 KQRQEVESKARK  326 (414)
Q Consensus       315 ~~~~~~~~~~~~  326 (414)
                      --+..+++..+-
T Consensus       509 mNlG~ykEA~~h  520 (579)
T KOG1125|consen  509 MNLGAYKEAVKH  520 (579)
T ss_pred             hhhhhHHHHHHH
Confidence            666666655443

>TIGR00540 hemY_coli hemY protein

Probab=97.88  E-value=0.0006  Score=68.56  Aligned_cols=115  Identities=17%  Similarity=0.176  Sum_probs=64.8

Q ss_pred             hhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCCh----------------HHH-HHHhh------h-hh
Q 015006          180 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDD----------------EEG-KVFVG------K-RN  235 (414)
Q Consensus       180 ~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~----------------~e~-~~~~~------~-~~  235 (414)
                      ..+.+++...-.+|-..+..|+|..|.+...++.+    ..|...                +.. ..+..      . ..
T Consensus        78 ~r~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~----~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l  153 (409)
T TIGR00540        78 GRKRRKAQKQTEEALLKLAEGDYAKAEKLIAKNAD----HAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNI  153 (409)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhh----cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCch
Confidence            33555788888899999999999999999988887    333320                000 00000      0 00


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006          236 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  298 (414)
Q Consensus       236 ~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l  298 (414)
                      .+...++..++..++++.|+..++..++..|+++.+++..+.++...|++++|++.+.+.++.
T Consensus       154 ~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~  216 (409)
T TIGR00540       154 LVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA  216 (409)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence            122223444555555555555555555555555555555555555555555555555555544

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.87  E-value=9.6e-05  Score=70.43  Aligned_cols=109  Identities=18%  Similarity=0.232  Sum_probs=86.4

Q ss_pred             HHHHHHhhhcccccc-ccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015006          185 EAEKIRVTGNRLFKE-GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  263 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~-g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~  263 (414)
                      .|..+...|..+... |+++.|+..|.+|+.++....  .       ......++.++|.++.++++|.+|+..+.++..
T Consensus       113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--~-------~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~  183 (282)
T PF14938_consen  113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--S-------PHSAAECLLKAADLYARLGRYEEAIEIYEEVAK  183 (282)
T ss_dssp             HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--C-------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            477888999999998 999999999999999765332  1       123357899999999999999999999999987


Q ss_pred             hCCC------cHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          264 ANPA------HVK-GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       264 ~dp~------~~k-a~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      ..-+      +++ .+++.+.|++.+|++..|...|++....+|..
T Consensus       184 ~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F  229 (282)
T PF14938_consen  184 KCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF  229 (282)
T ss_dssp             TCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred             HhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            5321      344 45788999999999999999999999999854

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.87  E-value=0.00021  Score=77.08  Aligned_cols=109  Identities=17%  Similarity=0.118  Sum_probs=74.2

Q ss_pred             HHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 015006          188 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  267 (414)
Q Consensus       188 ~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~  267 (414)
                      .+-...+.+...+++.+|+..+..++.    ..|..           ..+|+-+|..++..+++..|...  .++.+-+.
T Consensus        33 a~~~Li~~~~~~~~~deai~i~~~~l~----~~P~~-----------i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~   95 (906)
T PRK14720         33 ELDDLIDAYKSENLTDEAKDICEEHLK----EHKKS-----------ISALYISGILSLSRRPLNDSNLL--NLIDSFSQ   95 (906)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHH----hCCcc-----------eehHHHHHHHHHhhcchhhhhhh--hhhhhccc
Confidence            344445556677899999999998888    45544           45566666666666665555444  44444443


Q ss_pred             cH-------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          268 HV-------------------KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       268 ~~-------------------ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                      +.                   .|++.+|.||-++|++++|.+.|+++|+++|+| ..+...++-..
T Consensus        96 ~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n-~~aLNn~AY~~  160 (906)
T PRK14720         96 NLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDN-PEIVKKLATSY  160 (906)
T ss_pred             ccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCccc-HHHHHHHHHHH
Confidence            33                   788888888888888888888888888888887 55555555443

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=97.85  E-value=0.00067  Score=67.98  Aligned_cols=121  Identities=11%  Similarity=0.062  Sum_probs=84.3

Q ss_pred             hhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015006          181 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK  260 (414)
Q Consensus       181 e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~  260 (414)
                      .+.+++......|-..+-.|+|..|.+...++-..     .+.+          ...|...|.+..+.|+++.|..++.+
T Consensus        79 rr~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~-----~~~p----------~l~~llaA~aA~~~g~~~~A~~~l~~  143 (398)
T PRK10747         79 RKRRRARKQTEQALLKLAEGDYQQVEKLMTRNADH-----AEQP----------VVNYLLAAEAAQQRGDEARANQHLER  143 (398)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-----ccch----------HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            35557888888899999999999999777765552     1110          22234445555788888888888888


Q ss_pred             HHHhCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 015006          261 VLDANPAHVK-GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  317 (414)
Q Consensus       261 al~~dp~~~k-a~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~  317 (414)
                      +.+.+|++.- ...+.+..+...|++++|+..++++++.+|+| ..+...+..+....
T Consensus       144 A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~-~~al~ll~~~~~~~  200 (398)
T PRK10747        144 AAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRH-PEVLRLAEQAYIRT  200 (398)
T ss_pred             HHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHH
Confidence            8888887743 33455888888888888888888888888887 45555555554333

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.83  E-value=0.0011  Score=56.50  Aligned_cols=100  Identities=18%  Similarity=0.234  Sum_probs=79.7

Q ss_pred             hHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015006          183 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  262 (414)
Q Consensus       183 ~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al  262 (414)
                      ...+..........+..+++..+...+.+.+.    ..|..        .....+.+.+|.+++..|+|++|+..+..++
T Consensus         8 ~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~----~~~~s--------~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~   75 (145)
T PF09976_consen    8 AEQASALYEQALQALQAGDPAKAEAAAEQLAK----DYPSS--------PYAALAALQLAKAAYEQGDYDEAKAALEKAL   75 (145)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HCCCC--------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            34566666666666778888888887887777    33433        1234577889999999999999999999999


Q ss_pred             HhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015006          263 DANPAH---VKGLYRRGMAYMALGEFEEAQRDFEM  294 (414)
Q Consensus       263 ~~dp~~---~ka~~r~g~a~~~l~~~~eA~~~~~~  294 (414)
                      ...|+.   ..+.+|+|.+++..|+|++|+..++.
T Consensus        76 ~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~  110 (145)
T PF09976_consen   76 ANAPDPELKPLARLRLARILLQQGQYDEALATLQQ  110 (145)
T ss_pred             hhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            987654   56899999999999999999999976

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.83  E-value=0.0004  Score=67.31  Aligned_cols=134  Identities=11%  Similarity=0.117  Sum_probs=89.9

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHH------------
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRK------------  253 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~------------  253 (414)
                      ...+.-+|+.+...++..+|+-.|+.|..    +.|..           ..+|--+-.||+-.+.+++            
T Consensus       334 ~~alilKG~lL~~~~R~~~A~IaFR~Aq~----Lap~r-----------L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~  398 (564)
T KOG1174|consen  334 HEALILKGRLLIALERHTQAVIAFRTAQM----LAPYR-----------LEIYRGLFHSYLAQKRFKEANALANWTIRLF  398 (564)
T ss_pred             chHHHhccHHHHhccchHHHHHHHHHHHh----cchhh-----------HHHHHHHHHHHHhhchHHHHHHHHHHHHHHh
Confidence            34567788888888999999999988888    45443           3344444444444444444            


Q ss_pred             ------------------------HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 015006          254 ------------------------SIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAA  309 (414)
Q Consensus       254 ------------------------A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~  309 (414)
                                              |...++++|.++|...+|...+|..+...|.+..++..++++|...|+.  .++..
T Consensus       399 ~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~--~LH~~  476 (564)
T KOG1174|consen  399 QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV--NLHNH  476 (564)
T ss_pred             hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc--HHHHH
Confidence                                    5555555667778888888888888888889999999999999888875  46666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 015006          310 LSKLKKQRQEVESKARKQFKGLFDKKPG  337 (414)
Q Consensus       310 l~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (414)
                      |..+-....+..+. -..|...+...+.
T Consensus       477 Lgd~~~A~Ne~Q~a-m~~y~~ALr~dP~  503 (564)
T KOG1174|consen  477 LGDIMRAQNEPQKA-MEYYYKALRQDPK  503 (564)
T ss_pred             HHHHHHHhhhHHHH-HHHHHHHHhcCcc
Confidence            77665544443332 2344444444443

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.83  E-value=5e-05  Score=50.60  Aligned_cols=40  Identities=30%  Similarity=0.395  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 015006          270 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAAL  310 (414)
Q Consensus       270 ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l  310 (414)
                      .+++.+|.+|..+|++++|++.|+++++.+|+| ..+...|
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~-~~a~~~L   41 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDD-PEAWRAL   41 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC-HHHHHHh
Confidence            355566666666666666666666666666665 4444443

>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=6.4e-05  Score=75.44  Aligned_cols=84  Identities=19%  Similarity=0.376  Sum_probs=65.4

Q ss_pred             CCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCCeEEE--EecCCCccccCCCCCC
Q 015006           75 LHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALV--TCPPDYAYDKFLRPAN  152 (414)
Q Consensus        75 ~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~~v--~i~~~~~yg~~~~~~~  152 (414)
                      ..||.|+|+|.|+.   +|..| .+.   ..+.+.|.||.|.++|||+.+|.+|++|+...|  ++|.+|.-+..     
T Consensus       159 ~~gD~v~IDf~g~i---Dg~~f-egg---~ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L-----  226 (441)
T COG0544         159 ENGDRVTIDFEGSV---DGEEF-EGG---KAENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL-----  226 (441)
T ss_pred             ccCCEEEEEEEEEE---cCeec-cCc---cccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHh-----
Confidence            58999999999975   37777 333   345799999999999999999999999999774  55666543322     


Q ss_pred             CCCCcceEEEEEEcccCCCC
Q 015006          153 VPEGAHIQWEIELLGFEKPK  172 (414)
Q Consensus       153 ip~~~~l~~eieL~~~~~~~  172 (414)
                        .|....|.|+|..+....
T Consensus       227 --aGK~a~F~V~vkeVk~~e  244 (441)
T COG0544         227 --AGKEATFKVKVKEVKKRE  244 (441)
T ss_pred             --CCCceEEEEEEEEEeecC
Confidence              356689999999887643

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.81  E-value=0.00013  Score=50.47  Aligned_cols=48  Identities=21%  Similarity=0.391  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 015006          270 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  318 (414)
Q Consensus       270 ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~  318 (414)
                      ..+|.+|.+++++|+|++|+..++.+|+++|+| ..+......++.++.
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N-~Qa~~L~~~i~~~i~   49 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDN-RQAQSLKELIEDKIQ   49 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS--HHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc-HHHHHHHHHHHHHHh
Confidence            357889999999999999999999999999998 567766666655543

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.78  E-value=0.0017  Score=59.69  Aligned_cols=124  Identities=22%  Similarity=0.297  Sum_probs=99.0

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +..+-+.|...++.|+|.+|+..|.....    ..|.++.        .-.+.+.++-+++|.++|..|+...++-+.+.
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~----~~p~s~~--------~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly  101 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDS----RHPFSPY--------SEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY  101 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCcc--------cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence            67778889999999999999999999887    5555532        24567789999999999999999999999999


Q ss_pred             CCcH---HHHHHHHHHHHHcC--------CHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHHHHHHH
Q 015006          266 PAHV---KGLYRRGMAYMALG--------EFEEAQRDFEMMMKVDKSSE--PDATAALSKLKKQRQEVE  321 (414)
Q Consensus       266 p~~~---ka~~r~g~a~~~l~--------~~~eA~~~~~~al~l~P~n~--~~~~~~l~~~~~~~~~~~  321 (414)
                      |.++   -++|-+|.+++..=        --.+|+..|+..+.--|+..  .+++..+..++..+...+
T Consensus       102 P~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~E  170 (254)
T COG4105         102 PTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHE  170 (254)
T ss_pred             CCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHH
Confidence            8764   57888999987642        24678899999999999863  466667777766665544

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.76  E-value=0.00068  Score=59.71  Aligned_cols=97  Identities=16%  Similarity=0.244  Sum_probs=70.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 015006          241 VAACLLKLGECRKSIEACNKVLDANPAH-----VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  315 (414)
Q Consensus       241 ~a~~~~kl~~~~~A~~~~~~al~~dp~~-----~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~  315 (414)
                      -+.-+++.|+|.+|...|..||++.|..     .-.|.++|.|+++++.++.|+.++.+|++|+|.+.+ +......+..
T Consensus       101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~k-Al~RRAeaye  179 (271)
T KOG4234|consen  101 EGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEK-ALERRAEAYE  179 (271)
T ss_pred             HHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHH-HHHHHHHHHH
Confidence            4556789999999999999999999865     346789999999999999999999999999998743 3222233333


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCCc
Q 015006          316 QRQEVESKARKQFKGLFDKKPGEI  339 (414)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~  339 (414)
                      ++. .-...-.-|+++....++..
T Consensus       180 k~e-k~eealeDyKki~E~dPs~~  202 (271)
T KOG4234|consen  180 KME-KYEEALEDYKKILESDPSRR  202 (271)
T ss_pred             hhh-hHHHHHHHHHHHHHhCcchH
Confidence            332 22223345666666655443

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.76  E-value=0.00015  Score=71.75  Aligned_cols=60  Identities=23%  Similarity=0.352  Sum_probs=40.0

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015006          235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEM  294 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~  294 (414)
                      ..++.-.|..+++.++|+.|+..++++..+.|+..++|+.+|.+|..+|+|+.|+..++.
T Consensus       234 ~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs  293 (395)
T PF09295_consen  234 SELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS  293 (395)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence            345555666666667777777777777777777777777777777777777777655553

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.76  E-value=4.3e-05  Score=73.77  Aligned_cols=111  Identities=18%  Similarity=0.225  Sum_probs=88.1

Q ss_pred             hhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHH
Q 015006          180 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN  259 (414)
Q Consensus       180 ~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~  259 (414)
                      .++..+...+-+.||.||-.|+|..|+..-+.-|.+....-.         +.....+|.|+|.||+-+++|+.|+++|+
T Consensus       189 gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD---------rAaeRRA~sNlgN~hiflg~fe~A~ehYK  259 (639)
T KOG1130|consen  189 GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD---------RAAERRAHSNLGNCHIFLGNFELAIEHYK  259 (639)
T ss_pred             hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhh---------HHHHHHhhcccchhhhhhcccHhHHHHHH
Confidence            345556778889999999999999999988887764322110         11224689999999999999999999999


Q ss_pred             HHHHhC----C--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015006          260 KVLDAN----P--AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  299 (414)
Q Consensus       260 ~al~~d----p--~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~  299 (414)
                      +++.+.    .  .-+...|.+|++|.-+.+|+.|+.++++-|.+.
T Consensus       260 ~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIA  305 (639)
T KOG1130|consen  260 LTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIA  305 (639)
T ss_pred             HHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            876543    2  236678999999999999999999999988774

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.75  E-value=0.00035  Score=64.62  Aligned_cols=101  Identities=22%  Similarity=0.248  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH--HHHHHHHH
Q 015006          238 HLNVAACLLKLGECRKSIEACNKVLDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP--DATAALSK  312 (414)
Q Consensus       238 ~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~---~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~--~~~~~l~~  312 (414)
                      .+|.|.-+++.|+|..|...|..-+..-|++   +.|+|++|++++.+|+|+.|...|..+++-.|++++  ++..-|..
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            7889999999999999999999999999876   789999999999999999999999999999998742  33333334


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCCCCc
Q 015006          313 LKKQRQEVESKARKQFKGLFDKKPGEI  339 (414)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (414)
                      +...+. .....+..++.+.++.++..
T Consensus       224 ~~~~l~-~~d~A~atl~qv~k~YP~t~  249 (262)
T COG1729         224 SLGRLG-NTDEACATLQQVIKRYPGTD  249 (262)
T ss_pred             HHHHhc-CHHHHHHHHHHHHHHCCCCH
Confidence            433333 34445667777777766544

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.75  E-value=0.00017  Score=67.90  Aligned_cols=96  Identities=17%  Similarity=0.224  Sum_probs=77.3

Q ss_pred             hhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 015006          191 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK  270 (414)
Q Consensus       191 ~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~k  270 (414)
                      +.|..+++.|-+.+|.+.++.+|..+..                ...+.-++.+|.+..+...|+..+...|+.-|.++-
T Consensus       228 Q~gkCylrLgm~r~AekqlqssL~q~~~----------------~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT  291 (478)
T KOG1129|consen  228 QMGKCYLRLGMPRRAEKQLQSSLTQFPH----------------PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVT  291 (478)
T ss_pred             HHHHHHHHhcChhhhHHHHHHHhhcCCc----------------hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhh
Confidence            6788999999999999999999984332                235566778888888888888888888888888888


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          271 GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       271 a~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      -+.-.|++|..++++++|++.|+.+++++|.|
T Consensus       292 ~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~n  323 (478)
T KOG1129|consen  292 YLLGQARIHEAMEQQEDALQLYKLVLKLHPIN  323 (478)
T ss_pred             hhhhhHHHHHHHHhHHHHHHHHHHHHhcCCcc
Confidence            88888888888888888888888888887766

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.73  E-value=8.6e-05  Score=49.45  Aligned_cols=42  Identities=14%  Similarity=0.168  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 015006          237 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA  278 (414)
Q Consensus       237 ~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a  278 (414)
                      ++..+|.+|..+|++++|+..++++++.+|+|+.+++.+|++
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l   44 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL   44 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence            678899999999999999999999999999999999998863

>PRK11906 transcriptional regulator; Provisional

Probab=97.72  E-value=0.00029  Score=69.90  Aligned_cols=87  Identities=11%  Similarity=0.038  Sum_probs=75.0

Q ss_pred             cHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 015006          201 KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYM  280 (414)
Q Consensus       201 ~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~  280 (414)
                      .-.+|.+.-.+|++    +++.|           ..++..+|.+....++++.|+..+++|+.++|+.+.++|..|..+.
T Consensus       319 ~~~~a~~~A~rAve----ld~~D-----------a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~  383 (458)
T PRK11906        319 AAQKALELLDYVSD----ITTVD-----------GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHF  383 (458)
T ss_pred             HHHHHHHHHHHHHh----cCCCC-----------HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHH
Confidence            34445555555555    55555           6688889999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCC
Q 015006          281 ALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       281 ~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      ..|+.++|++.+++|++++|.-
T Consensus       384 ~~G~~~~a~~~i~~alrLsP~~  405 (458)
T PRK11906        384 HNEKIEEARICIDKSLQLEPRR  405 (458)
T ss_pred             HcCCHHHHHHHHHHHhccCchh
Confidence            9999999999999999999973

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.71  E-value=8.6e-05  Score=70.17  Aligned_cols=63  Identities=21%  Similarity=0.342  Sum_probs=59.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015006          239 LNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  301 (414)
Q Consensus       239 ~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~  301 (414)
                      --.|.-|+|+|.|++||.+|.+++.++|.|+-.+-+||.||+++..|..|..+|..|+.|+-.
T Consensus       101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~  163 (536)
T KOG4648|consen  101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL  163 (536)
T ss_pred             HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH
Confidence            357889999999999999999999999999999999999999999999999999999999754

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.70  E-value=0.00087  Score=55.11  Aligned_cols=66  Identities=18%  Similarity=0.168  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015006          236 LLHLNVAACLLKLGECRKSIEACNKVLDANPA---HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  301 (414)
Q Consensus       236 ~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~---~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~  301 (414)
                      .+++++|.++-.+|+.++|+..|.+++.....   -..++..+|.++..+|++++|+..|++++...|+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~   70 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD   70 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            36789999999999999999999999997543   3679999999999999999999999999999887

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.70  E-value=0.00018  Score=72.01  Aligned_cols=132  Identities=16%  Similarity=0.170  Sum_probs=91.1

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCC------------ChHHHHHH-------hhhhhHHHHHHHHHHH
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQ------------DDEEGKVF-------VGKRNLLHLNVAACLL  246 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~------------~~~e~~~~-------~~~~~~~~~N~a~~~~  246 (414)
                      +..|..-|..+--.+..++|+.+|..|-+.+......            +.+-.+.+       -+.-.-++.-+|.+.+
T Consensus       346 gpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay  425 (611)
T KOG1173|consen  346 GPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAY  425 (611)
T ss_pred             cHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheee
Confidence            4456667777777777777777777777754332110            00000000       0011235667888999


Q ss_pred             HcCCHHHHHHHHHHHHHhCC-------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 015006          247 KLGECRKSIEACNKVLDANP-------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  318 (414)
Q Consensus       247 kl~~~~~A~~~~~~al~~dp-------~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~  318 (414)
                      +.+.|.+|+.++..+|..-+       .+.-.+.++|.++.++++|++|+..|++||.+.|.+ ..+...+.-+...+.
T Consensus       426 ~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~-~~~~asig~iy~llg  503 (611)
T KOG1173|consen  426 TYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD-ASTHASIGYIYHLLG  503 (611)
T ss_pred             hHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhc
Confidence            99999999999999983321       234458899999999999999999999999999998 667777766654443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.66  E-value=0.00014  Score=69.26  Aligned_cols=106  Identities=19%  Similarity=0.224  Sum_probs=74.2

Q ss_pred             hHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015006          183 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  262 (414)
Q Consensus       183 ~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al  262 (414)
                      -..+..+...|+.+-..|+|.+|...|.+|..+.....  +       ......+|.+.+.||.+. ++.+|+..+.+|+
T Consensus        32 e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~--~-------~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~  101 (282)
T PF14938_consen   32 EEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLG--D-------KFEAAKAYEEAANCYKKG-DPDEAIECYEKAI  101 (282)
T ss_dssp             HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcC--C-------HHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHH
Confidence            34577778888888888999999999999988654322  1       112245677777777666 8888888888887


Q ss_pred             HhC--C----CcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhh
Q 015006          263 DAN--P----AHVKGLYRRGMAYMAL-GEFEEAQRDFEMMMKV  298 (414)
Q Consensus       263 ~~d--p----~~~ka~~r~g~a~~~l-~~~~eA~~~~~~al~l  298 (414)
                      .+-  .    .-++++.++|.+|... +++++|++.|++|+.+
T Consensus       102 ~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~  144 (282)
T PF14938_consen  102 EIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAEL  144 (282)
T ss_dssp             HHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHH
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            652  1    1267778888888887 8888888888888876

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.64  E-value=0.00013  Score=45.30  Aligned_cols=33  Identities=21%  Similarity=0.371  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 015006          236 LLHLNVAACLLKLGECRKSIEACNKVLDANPAH  268 (414)
Q Consensus       236 ~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~  268 (414)
                      .++.++|.+++++|+|++|+.++.++++++|+|
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            478899999999999999999999999999975

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.62  E-value=0.0022  Score=56.02  Aligned_cols=102  Identities=19%  Similarity=0.304  Sum_probs=88.4

Q ss_pred             HHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 015006          187 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  266 (414)
Q Consensus       187 ~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp  266 (414)
                      ..-...||.+...|+|.+|...|.+++.-   +...+           ..+++.+|.+.+.++++..|....++..+.+|
T Consensus        90 qnr~rLa~al~elGr~~EA~~hy~qalsG---~fA~d-----------~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p  155 (251)
T COG4700          90 QNRYRLANALAELGRYHEAVPHYQQALSG---IFAHD-----------AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP  155 (251)
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHhcc---ccCCC-----------HHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC
Confidence            34456788889999999999999999973   22233           56788899999999999999999999999998


Q ss_pred             C--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          267 A--HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       267 ~--~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      .  .+..+.-.|.++..+|++.+|...|+.++.--|.-
T Consensus       156 a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~  193 (251)
T COG4700         156 AFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP  193 (251)
T ss_pred             ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH
Confidence            5  57888899999999999999999999999999984

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.62  E-value=0.00091  Score=61.01  Aligned_cols=122  Identities=18%  Similarity=0.153  Sum_probs=87.4

Q ss_pred             hhccccccccHHHHHHHHHHHHhhcccCCCCChHHHH-----------------HHhhhh------hHHHHHHHHHHHHc
Q 015006          192 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGK-----------------VFVGKR------NLLHLNVAACLLKL  248 (414)
Q Consensus       192 ~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~-----------------~~~~~~------~~~~~N~a~~~~kl  248 (414)
                      .|..+-..|+|.+|++.|...|.    -+|.+.--.+                 .+.+..      ..++.-+|..|+.+
T Consensus        92 kam~lEa~~~~~~A~e~y~~lL~----ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~  167 (289)
T KOG3060|consen   92 KAMLLEATGNYKEAIEYYESLLE----DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSE  167 (289)
T ss_pred             HHHHHHHhhchhhHHHHHHHHhc----cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhH
Confidence            34455566889999999999887    5555432111                 111111      23677788899999


Q ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 015006          249 GECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG---EFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  318 (414)
Q Consensus       249 ~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~---~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~  318 (414)
                      ++|.+|+-++++++-+.|-|+-.+-|+|..++-+|   ++.-|.+.|.+|++++|.| -.+...+-.+-..+.
T Consensus       168 ~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~-~ral~GI~lc~~~la  239 (289)
T KOG3060|consen  168 GDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN-LRALFGIYLCGSALA  239 (289)
T ss_pred             hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh-HHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999988876   5677899999999999865 334444555555554

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.60  E-value=0.00011  Score=45.74  Aligned_cols=32  Identities=31%  Similarity=0.605  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015006          270 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  301 (414)
Q Consensus       270 ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~  301 (414)
                      ++|+.+|.++..+|++++|+..|++|++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            57788888888888888888888888888874

...

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.57  E-value=0.00052  Score=69.88  Aligned_cols=115  Identities=15%  Similarity=0.147  Sum_probs=88.7

Q ss_pred             HHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 015006          189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  268 (414)
Q Consensus       189 ~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~  268 (414)
                      +..+.-..|..++|...++.-...|.    -.|...+           .+.-.|..+..+|+-++|...+..++..|+.+
T Consensus        10 lF~~~lk~yE~kQYkkgLK~~~~iL~----k~~eHge-----------slAmkGL~L~~lg~~~ea~~~vr~glr~d~~S   74 (700)
T KOG1156|consen   10 LFRRALKCYETKQYKKGLKLIKQILK----KFPEHGE-----------SLAMKGLTLNCLGKKEEAYELVRLGLRNDLKS   74 (700)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHH----hCCccch-----------hHHhccchhhcccchHHHHHHHHHHhccCccc
Confidence            44455566777788888777777777    3444422           22335666778899999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 015006          269 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQE  319 (414)
Q Consensus       269 ~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~  319 (414)
                      .-+|.-.|..+....+|++|+++|..||+++|+| ..+.+-|..++.+++.
T Consensus        75 ~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN-~qilrDlslLQ~QmRd  124 (700)
T KOG1156|consen   75 HVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDN-LQILRDLSLLQIQMRD  124 (700)
T ss_pred             chhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999998 5677777777665554

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.57  E-value=0.00027  Score=72.78  Aligned_cols=84  Identities=15%  Similarity=0.196  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 015006          236 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  315 (414)
Q Consensus       236 ~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~  315 (414)
                      .+...+|.-.+..++|.+|..+++..++++|-....||++|.|..+++++..|..+|.+++.++|+| ..+..++....-
T Consensus       486 rA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~-~eaWnNls~ayi  564 (777)
T KOG1128|consen  486 RAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDN-AEAWNNLSTAYI  564 (777)
T ss_pred             HHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCc-hhhhhhhhHHHH
Confidence            3333344445567999999999999999999999999999999999999999999999999999998 788888887765


Q ss_pred             HHHHH
Q 015006          316 QRQEV  320 (414)
Q Consensus       316 ~~~~~  320 (414)
                      ++.+.
T Consensus       565 ~~~~k  569 (777)
T KOG1128|consen  565 RLKKK  569 (777)
T ss_pred             HHhhh
Confidence            55433

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.56  E-value=0.0023  Score=60.32  Aligned_cols=116  Identities=20%  Similarity=0.218  Sum_probs=95.8

Q ss_pred             hhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015006          182 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV  261 (414)
Q Consensus       182 ~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~a  261 (414)
                      .++.|.-+.+.+..+....++..|.....+|+.    .+|..           +.+-.-+|..++..|+|..|+..+..+
T Consensus       176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq----a~~~c-----------vRAsi~lG~v~~~~g~y~~AV~~~e~v  240 (389)
T COG2956         176 RVEIAQFYCELAQQALASSDVDRARELLKKALQ----ADKKC-----------VRASIILGRVELAKGDYQKAVEALERV  240 (389)
T ss_pred             hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh----hCccc-----------eehhhhhhHHHHhccchHHHHHHHHHH
Confidence            345677788888888888999999999999998    56655           445555899999999999999999999


Q ss_pred             HHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          262 LDANPAH-VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       262 l~~dp~~-~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                      ++.||+. +..+-.+..||.++|+.++.+..+.++.+..+..  ++...+..+.
T Consensus       241 ~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~--~~~l~l~~li  292 (389)
T COG2956         241 LEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA--DAELMLADLI  292 (389)
T ss_pred             HHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc--cHHHHHHHHH
Confidence            9999987 5678889999999999999999999999998874  3444444443

>TIGR00540 hemY_coli hemY protein

Probab=97.55  E-value=0.00089  Score=67.34  Aligned_cols=119  Identities=18%  Similarity=0.035  Sum_probs=91.1

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      .......|..+...|+++.|.....++++    ..|++...         ....-+....+..++...++..++++++.+
T Consensus       263 ~~l~~~~a~~l~~~g~~~~A~~~l~~~l~----~~pd~~~~---------~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~  329 (409)
T TIGR00540       263 IALKIALAEHLIDCDDHDSAQEIIFDGLK----KLGDDRAI---------SLPLCLPIPRLKPEDNEKLEKLIEKQAKNV  329 (409)
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHh----hCCCcccc---------hhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence            44555677788899999999999999999    56655210         001112333445688899999999999999


Q ss_pred             CCcH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHhhCCCCHHHHHHHHHHHHHHHHH
Q 015006          266 PAHV--KGLYRRGMAYMALGEFEEAQRDFE--MMMKVDKSSEPDATAALSKLKKQRQE  319 (414)
Q Consensus       266 p~~~--ka~~r~g~a~~~l~~~~eA~~~~~--~al~l~P~n~~~~~~~l~~~~~~~~~  319 (414)
                      |+++  ..+..+|..++.+|+|++|.+.|+  ++++.+|++ . ....+..+..+..+
T Consensus       330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~-~~~~La~ll~~~g~  385 (409)
T TIGR00540       330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-N-DLAMAADAFDQAGD  385 (409)
T ss_pred             CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-H-HHHHHHHHHHHcCC
Confidence            9999  788899999999999999999999  688899985 3 34477777665544

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.55  E-value=0.0019  Score=58.41  Aligned_cols=69  Identities=23%  Similarity=0.322  Sum_probs=59.1

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 015006          235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  303 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~---~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~  303 (414)
                      ...++..|..++..|+|.+|+..+++++...|.+   .+|.+.+|.+++..|+|++|+..|++.++..|++.
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~   76 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP   76 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence            4567889999999999999999999999988764   78999999999999999999999999999999874

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=97.51  E-value=0.0032  Score=63.09  Aligned_cols=100  Identities=17%  Similarity=0.207  Sum_probs=83.6

Q ss_pred             hhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 015006          191 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK  270 (414)
Q Consensus       191 ~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~k  270 (414)
                      ..+....+.|++..|...|.+|.+    ..|++.          .....-.+..++..|+++.|+..++++++.+|+++.
T Consensus       123 laA~aA~~~g~~~~A~~~l~~A~~----~~~~~~----------~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~  188 (398)
T PRK10747        123 LAAEAAQQRGDEARANQHLERAAE----LADNDQ----------LPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPE  188 (398)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHh----cCCcch----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH
Confidence            334455899999999999999998    555541          122233578899999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 015006          271 GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP  304 (414)
Q Consensus       271 a~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~  304 (414)
                      ++..++.+|...|++++|+..+.+..+..+.++.
T Consensus       189 al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~  222 (398)
T PRK10747        189 VLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE  222 (398)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH
Confidence            9999999999999999999999998888776533

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.50  E-value=0.0015  Score=67.10  Aligned_cols=68  Identities=18%  Similarity=0.231  Sum_probs=64.9

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      .-+++.+|.+|..+|++.+|+.+.++||+..|..+..|+.+|+++.+.|++.+|.+.++.|-.+|+.+
T Consensus       194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D  261 (517)
T PF12569_consen  194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLAD  261 (517)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh
Confidence            44678899999999999999999999999999999999999999999999999999999999999986

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.49  E-value=0.0014  Score=63.67  Aligned_cols=113  Identities=17%  Similarity=0.215  Sum_probs=86.9

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHH-----------------HHHHhhhhhH------HHHHHH
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEE-----------------GKVFVGKRNL------LHLNVA  242 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e-----------------~~~~~~~~~~------~~~N~a  242 (414)
                      ..-+-..|..+|..|++.+|+-.|.++..    ++|..-+.                 ......+...      -++--+
T Consensus       232 vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~----~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~  307 (564)
T KOG1174|consen  232 EHLMMALGKCLYYNGDYFQAEDIFSSTLC----ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHA  307 (564)
T ss_pred             HHHHHHHhhhhhhhcCchHHHHHHHHHhh----CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhh
Confidence            44566889999999999999999999887    55543111                 1111111111      122223


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          243 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       243 ~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      ...+-.++|..|+.+..++|..+|.+..||.-+|.++..+++.++|+-.|+.|..+.|..
T Consensus       308 ~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r  367 (564)
T KOG1174|consen  308 QLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYR  367 (564)
T ss_pred             hhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhh
Confidence            345567899999999999999999999999999999999999999999999999999864

>PRK10941 hypothetical protein; Provisional

Probab=97.49  E-value=0.0014  Score=61.55  Aligned_cols=74  Identities=18%  Similarity=0.205  Sum_probs=68.2

Q ss_pred             hhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 015006          232 GKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDA  306 (414)
Q Consensus       232 ~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~  306 (414)
                      .+....+.|+=.+|++.++|..|+.+++.+|.++|+++--+.-||.+|.++|.+..|+.+|+..++..|++ +.+
T Consensus       178 ~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~d-p~a  251 (269)
T PRK10941        178 EVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPED-PIS  251 (269)
T ss_pred             HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCc-hhH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999987 433

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.48  E-value=0.002  Score=59.99  Aligned_cols=69  Identities=13%  Similarity=0.084  Sum_probs=62.6

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 015006          235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK---GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  303 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~k---a~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~  303 (414)
                      ...++..|.-++..|+|.+|+..+++++...|....   +.+.+|.+|+++++|++|+..|++.++++|+++
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~  103 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP  103 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC
Confidence            445677899999999999999999999999998754   459999999999999999999999999999884

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.48  E-value=0.0043  Score=58.23  Aligned_cols=125  Identities=17%  Similarity=0.134  Sum_probs=95.1

Q ss_pred             cHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 015006          201 KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYM  280 (414)
Q Consensus       201 ~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~  280 (414)
                      ..+..+...+.-|.    .+|.+           ..-+.-+|.+|+.++++..|...|.+|+++.|+|+..+.-.|.+++
T Consensus       137 ~~~~l~a~Le~~L~----~nP~d-----------~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~  201 (287)
T COG4235         137 EMEALIARLETHLQ----QNPGD-----------AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALY  201 (287)
T ss_pred             cHHHHHHHHHHHHH----hCCCC-----------chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            34455555566666    67777           4556679999999999999999999999999999999999999998


Q ss_pred             HcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccc
Q 015006          281 ALG---EFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPGEISEV  342 (414)
Q Consensus       281 ~l~---~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (414)
                      ...   .-.+|...|++|+++||+| ..+...|......... -+.....++.|++..+.+..-.
T Consensus       202 ~~a~~~~ta~a~~ll~~al~~D~~~-iral~lLA~~afe~g~-~~~A~~~Wq~lL~~lp~~~~rr  264 (287)
T COG4235         202 YQAGQQMTAKARALLRQALALDPAN-IRALSLLAFAAFEQGD-YAEAAAAWQMLLDLLPADDPRR  264 (287)
T ss_pred             HhcCCcccHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHccc-HHHHHHHHHHHHhcCCCCCchH
Confidence            864   3678999999999999998 5566666554433332 3344667888888776655443

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.42  E-value=0.00092  Score=54.90  Aligned_cols=61  Identities=21%  Similarity=0.270  Sum_probs=57.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015006          241 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  301 (414)
Q Consensus       241 ~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~  301 (414)
                      -|.+....++.+.|++-|.++|.+-|.++-||.+|++++.-.|+-++|+.++++|+++...
T Consensus        49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~  109 (175)
T KOG4555|consen   49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGD  109 (175)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCc
Confidence            4666778899999999999999999999999999999999999999999999999999754

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.41  E-value=0.0041  Score=56.83  Aligned_cols=51  Identities=20%  Similarity=0.285  Sum_probs=39.1

Q ss_pred             hHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 015006          235 NLLHLNVAACLLKLG---ECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF  285 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~---~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~  285 (414)
                      ..++..+|-.++-+|   ++.-|..++.++|+++|.+..++|-+-.+...+-+.
T Consensus       188 ~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~~  241 (289)
T KOG3060|consen  188 PLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQI  241 (289)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHHH
Confidence            556777787777665   678899999999999998888888876666555433

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.39  E-value=0.00075  Score=67.97  Aligned_cols=111  Identities=20%  Similarity=0.291  Sum_probs=94.5

Q ss_pred             HHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 015006          189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  268 (414)
Q Consensus       189 ~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~  268 (414)
                      +...|-.+-..|+-..|+.+...|+.    ..|...          -....|+|.+.++-+-...|-....++|.+....
T Consensus       610 ln~aglywr~~gn~~~a~~cl~~a~~----~~p~~~----------~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~se  675 (886)
T KOG4507|consen  610 LNEAGLYWRAVGNSTFAIACLQRALN----LAPLQQ----------DVPLVNLANLLIHYGLHLDATKLLLQALAINSSE  675 (886)
T ss_pred             eecccceeeecCCcHHHHHHHHHHhc----cChhhh----------cccHHHHHHHHHHhhhhccHHHHHHHHHhhcccC
Confidence            34566666788999999999999998    444321          2356789999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          269 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       269 ~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                      +-.+|-+|++++.+.+.+.|++.|+.|++++|++ ..+...|..+.
T Consensus       676 pl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~-~~~~~~l~~i~  720 (886)
T KOG4507|consen  676 PLTFLSLGNAYLALKNISGALEAFRQALKLTTKC-PECENSLKLIR  720 (886)
T ss_pred             chHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCC-hhhHHHHHHHH
Confidence            9999999999999999999999999999999998 67777776654

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.38  E-value=0.0011  Score=71.58  Aligned_cols=62  Identities=16%  Similarity=0.135  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006          236 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  298 (414)
Q Consensus       236 ~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l  298 (414)
                      .++..+|.||-++|++++|...++++|++||+|+-++-+.|..|... ++++|+..+.+|+..
T Consensus       117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~  178 (906)
T PRK14720        117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR  178 (906)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence            48889999999999999999999999999999999999999999999 999999999999876

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.37  E-value=0.0015  Score=63.37  Aligned_cols=103  Identities=21%  Similarity=0.219  Sum_probs=83.2

Q ss_pred             HHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 015006          187 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  266 (414)
Q Consensus       187 ~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp  266 (414)
                      ..+-+.||.+.-.|+|+.|++.|++++.....+...         ..-+...+.+|.+|.-+++|..||.+..+-|.+..
T Consensus       236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r---------~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq  306 (639)
T KOG1130|consen  236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNR---------TVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ  306 (639)
T ss_pred             HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcch---------hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345678999999999999999999988754333221         12245667799999999999999999998776642


Q ss_pred             ------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006          267 ------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  298 (414)
Q Consensus       267 ------~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l  298 (414)
                            .-..|++.+|+++..+|..+.|+...++.+++
T Consensus       307 eL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~  344 (639)
T KOG1130|consen  307 ELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS  344 (639)
T ss_pred             HHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence                  45889999999999999999999988888776

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.36  E-value=0.00098  Score=63.66  Aligned_cols=80  Identities=20%  Similarity=0.245  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHH--cC--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 015006          237 LHLNVAACLLK--LG--ECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK  312 (414)
Q Consensus       237 ~~~N~a~~~~k--l~--~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~  312 (414)
                      +..++|.+++.  .|  .+.+|...|+......+.+++.+..+|.|++.+|+|++|...++.|+..+|.+ +++..++..
T Consensus       165 ~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~-~d~LaNliv  243 (290)
T PF04733_consen  165 ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND-PDTLANLIV  243 (290)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC-HHHHHHHHH
Confidence            44455554443  33  58888888888777667888888889999999999999999999999988886 666666666


Q ss_pred             HHHHH
Q 015006          313 LKKQR  317 (414)
Q Consensus       313 ~~~~~  317 (414)
                      +...+
T Consensus       244 ~~~~~  248 (290)
T PF04733_consen  244 CSLHL  248 (290)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            65443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.30  E-value=0.0058  Score=51.39  Aligned_cols=69  Identities=16%  Similarity=0.233  Sum_probs=62.8

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 015006          235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPA---HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  303 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~---~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~  303 (414)
                      ...+++.|...++.|+|.+|+..++.+..--|-   ...|.+.+|.+|+..++|++|+..+++-++|+|.|+
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp   81 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP   81 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence            446778899999999999999999999888775   478999999999999999999999999999999984

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.29  E-value=0.0015  Score=62.43  Aligned_cols=87  Identities=21%  Similarity=0.261  Sum_probs=68.7

Q ss_pred             cHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 015006          201 KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYM  280 (414)
Q Consensus       201 ~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~  280 (414)
                      ++..|...|.....    ..+.+           ..+++.+|.|++.+|+|++|...+.+|+..+|.++.++.++..+..
T Consensus       182 ~~~~A~y~f~El~~----~~~~t-----------~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~  246 (290)
T PF04733_consen  182 KYQDAFYIFEELSD----KFGST-----------PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSL  246 (290)
T ss_dssp             CCCHHHHHHHHHHC----CS--S-----------HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHh----ccCCC-----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence            46666666666443    11222           4677889999999999999999999999999999999999999999


Q ss_pred             HcCCH-HHHHHHHHHHHhhCCCC
Q 015006          281 ALGEF-EEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       281 ~l~~~-~eA~~~~~~al~l~P~n  302 (414)
                      .+|+- +.+.+.+.+....+|++
T Consensus       247 ~~gk~~~~~~~~l~qL~~~~p~h  269 (290)
T PF04733_consen  247 HLGKPTEAAERYLSQLKQSNPNH  269 (290)
T ss_dssp             HTT-TCHHHHHHHHHCHHHTTTS
T ss_pred             HhCCChhHHHHHHHHHHHhCCCC
Confidence            99998 66777888888899998

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.28  E-value=0.00072  Score=60.33  Aligned_cols=72  Identities=17%  Similarity=0.235  Sum_probs=68.0

Q ss_pred             hhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 015006          232 GKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  303 (414)
Q Consensus       232 ~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~  303 (414)
                      +.++.+++-+|..|-.+|-|.-|..+++++|.+.|.-+.++-.+|.-+...|+|+.|.+.|...+++||.++
T Consensus        62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~  133 (297)
T COG4785          62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN  133 (297)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch
Confidence            345788999999999999999999999999999999999999999999999999999999999999999873

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.26  E-value=0.0006  Score=61.62  Aligned_cols=73  Identities=14%  Similarity=0.171  Sum_probs=64.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          241 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       241 ~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                      -+.+++.-+.|..|+..+.+||.++|..+.-+-+++.||+++.+|+.+..++.+|++++|+. ......|....
T Consensus        16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~-vk~h~flg~~~   88 (284)
T KOG4642|consen   16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNL-VKAHYFLGQWL   88 (284)
T ss_pred             ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHH-HHHHHHHHHHH
Confidence            45667778899999999999999999999999999999999999999999999999999986 45555555543

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.22  E-value=0.0016  Score=45.14  Aligned_cols=39  Identities=23%  Similarity=0.339  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 015006          237 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRR  275 (414)
Q Consensus       237 ~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~  275 (414)
                      +++.+|.+++++|+|..|..+|+.+|+++|+|..|.--+
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~   41 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK   41 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            667799999999999999999999999999998875443

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=97.20  E-value=0.0035  Score=65.21  Aligned_cols=115  Identities=16%  Similarity=0.146  Sum_probs=94.3

Q ss_pred             hhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 015006          191 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK  270 (414)
Q Consensus       191 ~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~k  270 (414)
                      ..+..+.+.++-.+|..+..+|-.+    .|           +....|+-+|.++...+++.+|...|..|+.+||+++.
T Consensus       655 laa~~~~~~~~~~~a~~CL~Ea~~~----~~-----------l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~  719 (799)
T KOG4162|consen  655 LAADLFLLSGNDDEARSCLLEASKI----DP-----------LSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVP  719 (799)
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHhc----ch-----------hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcH
Confidence            3344444556666676677776663    22           23678888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHH--HHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 015006          271 GLYRRGMAYMALGEFEEAQR--DFEMMMKVDKSSEPDATAALSKLKKQRQEVE  321 (414)
Q Consensus       271 a~~r~g~a~~~l~~~~eA~~--~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~  321 (414)
                      +..-+|.++...|+-.-|..  .+..|+++||.| .++...|..+-+++-..+
T Consensus       720 s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n-~eaW~~LG~v~k~~Gd~~  771 (799)
T KOG4162|consen  720 SMTALAELLLELGSPRLAEKRSLLSDALRLDPLN-HEAWYYLGEVFKKLGDSK  771 (799)
T ss_pred             HHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHccchH
Confidence            99999999999998777777  999999999999 789999999877665444

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.18  E-value=0.0039  Score=63.70  Aligned_cols=97  Identities=18%  Similarity=0.230  Sum_probs=83.1

Q ss_pred             HHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 015006          188 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  267 (414)
Q Consensus       188 ~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~  267 (414)
                      .+...|-.+-..++|.+|+++|+.|+.    +.++|           ..++..+|..+.++++|......=.+.|++.|.
T Consensus        77 CwHv~gl~~R~dK~Y~eaiKcy~nAl~----~~~dN-----------~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~  141 (700)
T KOG1156|consen   77 CWHVLGLLQRSDKKYDEAIKCYRNALK----IEKDN-----------LQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS  141 (700)
T ss_pred             hHHHHHHHHhhhhhHHHHHHHHHHHHh----cCCCc-----------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Confidence            344566666777899999999999999    77777           678888999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015006          268 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  299 (414)
Q Consensus       268 ~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~  299 (414)
                      +-..|+-.|.++..+|++..|...++.-.+..
T Consensus       142 ~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~  173 (700)
T KOG1156|consen  142 QRASWIGFAVAQHLLGEYKMALEILEEFEKTQ  173 (700)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999998777666654

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.16  E-value=0.0021  Score=60.06  Aligned_cols=92  Identities=22%  Similarity=0.336  Sum_probs=75.0

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      |....+.|-.+|+.|+|+.|++.|+.|+.+    ....           .-+-+|+|.|+++.++|..|+++...+++.-
T Consensus       144 Ad~~in~gCllykegqyEaAvqkFqaAlqv----sGyq-----------pllAYniALaHy~~~qyasALk~iSEIieRG  208 (459)
T KOG4340|consen  144 ADGQINLGCLLYKEGQYEAAVQKFQAALQV----SGYQ-----------PLLAYNLALAHYSSRQYASALKHISEIIERG  208 (459)
T ss_pred             cchhccchheeeccccHHHHHHHHHHHHhh----cCCC-----------chhHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence            667788999999999999999999999983    3222           4567899999999999999999999887542


Q ss_pred             ----CC-------------------------cHHHHHHHHHHHHHcCCHHHHHHHH
Q 015006          266 ----PA-------------------------HVKGLYRRGMAYMALGEFEEAQRDF  292 (414)
Q Consensus       266 ----p~-------------------------~~ka~~r~g~a~~~l~~~~eA~~~~  292 (414)
                          |.                         -+.|+--++-+++..++++.|.+.+
T Consensus       209 ~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaL  264 (459)
T KOG4340|consen  209 IRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEAL  264 (459)
T ss_pred             hhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHh
Confidence                21                         1567777788889999999888765

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.11  E-value=0.0022  Score=68.37  Aligned_cols=77  Identities=13%  Similarity=0.116  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 015006          238 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  315 (414)
Q Consensus       238 ~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~  315 (414)
                      +.-+|..|++.+++..|+.+++.||+.+|.+..++.-+|.||...|+|.-|++.|.+|..++|.+ .-.+.-...++.
T Consensus       565 W~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s-~y~~fk~A~~ec  641 (1238)
T KOG1127|consen  565 WVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS-KYGRFKEAVMEC  641 (1238)
T ss_pred             hhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh-HHHHHHHHHHHH
Confidence            34488889999999999999999999999999999999999999999999999999999999997 334443343333

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.10  E-value=0.002  Score=68.63  Aligned_cols=98  Identities=15%  Similarity=0.256  Sum_probs=91.3

Q ss_pred             HHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 015006          188 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  267 (414)
Q Consensus       188 ~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~  267 (414)
                      .+-.+|-.+.+.+++..|+..|+.|++    .+|.+           ..++.-++.+|...|.|..|++.+++|..++|.
T Consensus       564 nW~~rG~yyLea~n~h~aV~~fQsALR----~dPkD-----------~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~  628 (1238)
T KOG1127|consen  564 NWVQRGPYYLEAHNLHGAVCEFQSALR----TDPKD-----------YNLWLGLGEAYPESGRYSHALKVFTKASLLRPL  628 (1238)
T ss_pred             hhhhccccccCccchhhHHHHHHHHhc----CCchh-----------HHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence            455699999999999999999999999    88888           779999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 015006          268 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK  300 (414)
Q Consensus       268 ~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P  300 (414)
                      +.-+.|..|.....+|+|.+|+..+...+....
T Consensus       629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s  661 (1238)
T KOG1127|consen  629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFS  661 (1238)
T ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998887643

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.10  E-value=0.00095  Score=41.38  Aligned_cols=33  Identities=24%  Similarity=0.385  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 015006          236 LLHLNVAACLLKLGECRKSIEACNKVLDANPAH  268 (414)
Q Consensus       236 ~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~  268 (414)
                      .+|.++|.+|.++|++++|+.++.++++++|+|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            478899999999999999999999999999854

...

>PRK15331 chaperone protein SicA; Provisional

Probab=97.07  E-value=0.012  Score=50.79  Aligned_cols=81  Identities=6%  Similarity=-0.118  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 015006          237 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  316 (414)
Q Consensus       237 ~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~  316 (414)
                      ..+-.|.-++..|+|++|...|.-...+||.|.+-++-+|-|+..+++|++|+..|..|..+++++ +..-.....|.-.
T Consensus        39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d-p~p~f~agqC~l~  117 (165)
T PRK15331         39 GLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND-YRPVFFTGQCQLL  117 (165)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC-CCccchHHHHHHH
Confidence            344577778999999999999999999999999999999999999999999999999999998876 4444455555444


Q ss_pred             HH
Q 015006          317 RQ  318 (414)
Q Consensus       317 ~~  318 (414)
                      +.
T Consensus       118 l~  119 (165)
T PRK15331        118 MR  119 (165)
T ss_pred             hC
Confidence            43

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.01  E-value=0.01  Score=52.32  Aligned_cols=100  Identities=17%  Similarity=0.238  Sum_probs=79.7

Q ss_pred             HHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 015006          188 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  267 (414)
Q Consensus       188 ~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~  267 (414)
                      ...+.+..++..+++..|....+.++.     .+.+       ..+...+-.++|.+.+.++.+++|+...+..-.   .
T Consensus        91 aaL~lAk~~ve~~~~d~A~aqL~~~l~-----~t~D-------e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~---~  155 (207)
T COG2976          91 AALELAKAEVEANNLDKAEAQLKQALA-----QTKD-------ENLKALAALRLARVQLQQKKADAALKTLDTIKE---E  155 (207)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHc-----cchh-------HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc---c
Confidence            445667778888999999999999997     3443       235566788999999999999999988765522   3


Q ss_pred             cHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          268 HVKG--LYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       268 ~~ka--~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      +..+  --.+|.+++..|+-++|+..|.+|++.++++
T Consensus       156 ~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         156 SWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP  192 (207)
T ss_pred             cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence            3333  5678999999999999999999999998664

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.01  E-value=0.015  Score=57.82  Aligned_cols=107  Identities=18%  Similarity=0.175  Sum_probs=90.1

Q ss_pred             cccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 015006          199 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA  278 (414)
Q Consensus       199 ~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a  278 (414)
                      .++|..|+..+++...    ..|.              +..-+|.+++.+++-.+|+....++|...|.+...+.-.|..
T Consensus       182 t~~~~~ai~lle~L~~----~~pe--------------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~f  243 (395)
T PF09295_consen  182 TQRYDEAIELLEKLRE----RDPE--------------VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEF  243 (395)
T ss_pred             cccHHHHHHHHHHHHh----cCCc--------------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            3568888888887666    3332              233488999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 015006          279 YMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKA  324 (414)
Q Consensus       279 ~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~~  324 (414)
                      ++..++++.|+...++|.++.|++ -.....|..+.-.+...+..-
T Consensus       244 Ll~k~~~~lAL~iAk~av~lsP~~-f~~W~~La~~Yi~~~d~e~AL  288 (395)
T PF09295_consen  244 LLSKKKYELALEIAKKAVELSPSE-FETWYQLAECYIQLGDFENAL  288 (395)
T ss_pred             HHhcCCHHHHHHHHHHHHHhCchh-HHHHHHHHHHHHhcCCHHHHH
Confidence            999999999999999999999997 678888998887777666543

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.00  E-value=0.0013  Score=40.36  Aligned_cols=31  Identities=32%  Similarity=0.589  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015006          271 GLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  301 (414)
Q Consensus       271 a~~r~g~a~~~l~~~~eA~~~~~~al~l~P~  301 (414)
                      |+|++|.++..+|++++|+..|+++++..|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            6778888888888888888888888887776

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=96.96  E-value=0.0097  Score=49.20  Aligned_cols=83  Identities=16%  Similarity=0.280  Sum_probs=66.1

Q ss_pred             hHHHHHHHHHHHHcCC---HHHHHHHHHHHHH-hCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 015006          235 NLLHLNVAACLLKLGE---CRKSIEACNKVLD-ANPA-HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAA  309 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~---~~~A~~~~~~al~-~dp~-~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~  309 (414)
                      ..+.+|+|.|+.+..+   -.+.+..++..++ -.|. .-..+|.+|..|+++++|+.|+.++...|+.+|+| ..+...
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n-~Qa~~L  110 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN-RQALEL  110 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc-HHHHHH
Confidence            5678999999998765   5667788888886 3443 45688999999999999999999999999999998 566655


Q ss_pred             HHHHHHHHH
Q 015006          310 LSKLKKQRQ  318 (414)
Q Consensus       310 l~~~~~~~~  318 (414)
                      -..++.++.
T Consensus       111 k~~ied~it  119 (149)
T KOG3364|consen  111 KETIEDKIT  119 (149)
T ss_pred             HHHHHHHHh
Confidence            555554443

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=96.96  E-value=0.012  Score=60.50  Aligned_cols=122  Identities=16%  Similarity=0.123  Sum_probs=92.9

Q ss_pred             hhhccccccccHHHHHHHHHHHHhhcccCCCCChHHH-------------HHHhhhhh---------HHHHHHHHHHHHc
Q 015006          191 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG-------------KVFVGKRN---------LLHLNVAACLLKL  248 (414)
Q Consensus       191 ~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~-------------~~~~~~~~---------~~~~N~a~~~~kl  248 (414)
                      --+...+..|+...|......|..    ..|.+++-+             +..+.+..         .+|..-+....-+
T Consensus       589 M~ake~w~agdv~~ar~il~~af~----~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~l  664 (913)
T KOG0495|consen  589 MYAKEKWKAGDVPAARVILDQAFE----ANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYL  664 (913)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHH----hCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHh
Confidence            345566777888888888888887    455443211             11111211         2555556666678


Q ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 015006          249 GECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  317 (414)
Q Consensus       249 ~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~  317 (414)
                      ++.++|+..|+.+|+.-|...|.|..+|+++-.+++.+.|.+.|...++..|.. .-+.-.|.++..+.
T Consensus       665 d~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~-ipLWllLakleEk~  732 (913)
T KOG0495|consen  665 DNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS-IPLWLLLAKLEEKD  732 (913)
T ss_pred             hhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC-chHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999987 45777777776554

>smart00028 TPR Tetratricopeptide repeats

Probab=96.88  E-value=0.0017  Score=38.50  Aligned_cols=32  Identities=34%  Similarity=0.720  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015006          270 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  301 (414)
Q Consensus       270 ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~  301 (414)
                      .+++++|.++..+++++.|+..|.++++++|+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            45667777777777777777777777766664

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.88  E-value=0.0056  Score=62.45  Aligned_cols=103  Identities=17%  Similarity=0.221  Sum_probs=88.4

Q ss_pred             HHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 015006          187 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  266 (414)
Q Consensus       187 ~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp  266 (414)
                      ..+.+.+..+|+..+|..|++.|...+.++.    .+..     ....+.+.-|++.||+++.+.+.|.+++..|=+.||
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~----~D~~-----~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~  425 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDII----SDNY-----SDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDR  425 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhcc----chhh-----hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcc
Confidence            4567889999999999999999999999643    2211     112267888999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006          267 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  298 (414)
Q Consensus       267 ~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l  298 (414)
                      .++-..+..-++...-+.-++|+..+.+....
T Consensus       426 ~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  426 QSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             ccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence            99999999999999999999999988877655

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.87  E-value=0.001  Score=41.55  Aligned_cols=33  Identities=27%  Similarity=0.447  Sum_probs=30.0

Q ss_pred             HHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHH
Q 015006          208 KYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSI  255 (414)
Q Consensus       208 ~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~  255 (414)
                      +|++||+    ++|.+           ..+|+|+|.+|...|++++|+
T Consensus         1 ~y~kAie----~~P~n-----------~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIE----LNPNN-----------AEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHH----HCCCC-----------HHHHHHHHHHHHHCcCHHhhc
Confidence            4889999    78988           789999999999999999986

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.85  E-value=0.017  Score=53.17  Aligned_cols=114  Identities=17%  Similarity=0.288  Sum_probs=87.6

Q ss_pred             HHhhhccccccccHHHHHHHHHHHHhhcccCCCC-------------ChHHHH-----------HHh--hhhhHHHHHHH
Q 015006          189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQ-------------DDEEGK-----------VFV--GKRNLLHLNVA  242 (414)
Q Consensus       189 ~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~-------------~~~e~~-----------~~~--~~~~~~~~N~a  242 (414)
                      .....+.+...|.|.-.+..|.+.++..+...|.             +.+..+           .+.  .....++-|.|
T Consensus       180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a  259 (366)
T KOG2796|consen  180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA  259 (366)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence            3445667777888888888888877743222221             111000           011  12345788899


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          243 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       243 ~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      ..|+-.++|..|...+++++..||.++-|.-++|.|++.+|+...|++.++.++...|..
T Consensus       260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            999999999999999999999999999999999999999999999999999999999974

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.68  E-value=0.016  Score=54.97  Aligned_cols=67  Identities=16%  Similarity=0.156  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 015006          237 LHLNVAACLLKLGECRKSIEACNKVLDANPA----HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  303 (414)
Q Consensus       237 ~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~----~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~  303 (414)
                      -|---|.-|+|.++|..|+..|++.|...-.    |+-.|.+||-|.+.+|+|..|+.++.+|+.++|.+.
T Consensus        83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~  153 (390)
T KOG0551|consen   83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHL  153 (390)
T ss_pred             HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchh
Confidence            4445678899999999999999999987533    466789999999999999999999999999999984

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.68  E-value=0.0071  Score=57.80  Aligned_cols=108  Identities=14%  Similarity=0.161  Sum_probs=61.8

Q ss_pred             hhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH---------
Q 015006          192 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL---------  262 (414)
Q Consensus       192 ~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al---------  262 (414)
                      .|-.+|..|+|++|+..|+-+..    ....+           ..+..|+|.|++-+|.|.+|.....+|-         
T Consensus        63 ia~C~fhLgdY~~Al~~Y~~~~~----~~~~~-----------~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLl  127 (557)
T KOG3785|consen   63 IAHCYFHLGDYEEALNVYTFLMN----KDDAP-----------AELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLL  127 (557)
T ss_pred             HHHHHHhhccHHHHHHHHHHHhc----cCCCC-----------cccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHH
Confidence            35678999999999999988776    22212           3456666777666666666665544331         


Q ss_pred             -----HhC------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 015006          263 -----DAN------------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  315 (414)
Q Consensus       263 -----~~d------------p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~  315 (414)
                           +++            .+...-...+|..++..-.|.+|+..|.++|.-+|+- ..+...+..|--
T Consensus       128 fhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey-~alNVy~ALCyy  196 (557)
T KOG3785|consen  128 FHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEY-IALNVYMALCYY  196 (557)
T ss_pred             HHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhh-hhhHHHHHHHHH
Confidence                 111            0112223334555555556666666666666666553 334444444433

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=96.67  E-value=0.0024  Score=63.29  Aligned_cols=66  Identities=18%  Similarity=0.162  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          237 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       237 ~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      .+-|-|.-.++-+.|+.|+..|.+||+++|+++--+-+|++|+.+.++|..|+.++.+|++++|..
T Consensus         6 e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~   71 (476)
T KOG0376|consen    6 ELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY   71 (476)
T ss_pred             hhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh
Confidence            344567778899999999999999999999999999999999999999999999999999999986

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.62  E-value=0.011  Score=56.40  Aligned_cols=87  Identities=20%  Similarity=0.274  Sum_probs=66.7

Q ss_pred             cccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 015006          195 RLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYR  274 (414)
Q Consensus       195 ~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r  274 (414)
                      ++....+|..|+...+-.+.    +.   .+|+       ..+-.=+|.|++++|+|++|+..++-+.+-+..+.+...+
T Consensus        31 dfls~rDytGAislLefk~~----~~---~EEE-------~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vn   96 (557)
T KOG3785|consen   31 DFLSNRDYTGAISLLEFKLN----LD---REEE-------DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVN   96 (557)
T ss_pred             HHHhcccchhHHHHHHHhhc----cc---hhhh-------HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchh
Confidence            44566788888877665553    11   1111       2233348999999999999999999999988788999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHH
Q 015006          275 RGMAYMALGEFEEAQRDFEMM  295 (414)
Q Consensus       275 ~g~a~~~l~~~~eA~~~~~~a  295 (414)
                      +|.|++.+|.|.+|...-.+|
T Consensus        97 LAcc~FyLg~Y~eA~~~~~ka  117 (557)
T KOG3785|consen   97 LACCKFYLGQYIEAKSIAEKA  117 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHhhC
Confidence            999999999999998765554

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.62  E-value=0.0041  Score=39.30  Aligned_cols=29  Identities=24%  Similarity=0.436  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015006          271 GLYRRGMAYMALGEFEEAQRDFEMMMKVD  299 (414)
Q Consensus       271 a~~r~g~a~~~l~~~~eA~~~~~~al~l~  299 (414)
                      ||.++|.+|..+|+|++|+..|+++|.+.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            57889999999999999999999966553

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.61  E-value=0.058  Score=49.09  Aligned_cols=102  Identities=25%  Similarity=0.271  Sum_probs=77.4

Q ss_pred             hccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhC
Q 015006          193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE-------CRKSIEACNKVLDAN  265 (414)
Q Consensus       193 Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~-------~~~A~~~~~~al~~d  265 (414)
                      +..+-....+..|+..|.-||-.........        ...+.+++.+|.+|-.+++       +..|+..+.+|++..
T Consensus        84 ~~~~~~~Rt~~~ai~~YkLAll~~~~~~~~~--------s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e  155 (214)
T PF09986_consen   84 PRDFSGERTLEEAIESYKLALLCAQIKKEKP--------SKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENE  155 (214)
T ss_pred             cCCCCCCCCHHHHHHHHHHHHHHHHHhCCCH--------HHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhC
Confidence            3366677789999999999997544332222        2346789999999999998       555666666666554


Q ss_pred             C------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          266 P------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       266 p------~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      .      +....+|-+|..+..+|++++|+.+|.+++..--.+
T Consensus       156 ~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s  198 (214)
T PF09986_consen  156 DFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS  198 (214)
T ss_pred             cCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence            2      236889999999999999999999999999875443

>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.58  E-value=0.0019  Score=55.88  Aligned_cols=40  Identities=30%  Similarity=0.492  Sum_probs=36.3

Q ss_pred             EEcCCCCchHHHHHHhhhcCCCCeEEEEecCCCccccCCC
Q 015006          110 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLR  149 (414)
Q Consensus       110 f~lG~~~v~~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~  149 (414)
                      |++|.+++++|++.++.+|+.||+..+.+||+++||..+.
T Consensus         1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~   40 (188)
T KOG0549|consen    1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGR   40 (188)
T ss_pred             CcccceEEecCHHHHhhhhhccccceeccCCccccccccc
Confidence            4688999999999999999999999999999999995443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.57  E-value=0.015  Score=55.81  Aligned_cols=118  Identities=21%  Similarity=0.203  Sum_probs=90.0

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCC---------CCC----hHHHH---------------HHhhhhhH
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVN---------PQD----DEEGK---------------VFVGKRNL  236 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~---------p~~----~~e~~---------------~~~~~~~~  236 (414)
                      ++....+.|..++...++.+|+..+++.|..+....         +.-    .+-..               .-......
T Consensus         5 q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~e   84 (518)
T KOG1941|consen    5 QTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLE   84 (518)
T ss_pred             hhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466677889999999999999999999887554321         100    00000               01123446


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          237 LHLNVAACLLKLGECRKSIEACNKVLDANPAH-----VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       237 ~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~-----~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      +|.|++..+-++.+|.+++.+++-.+.+-...     -.++.-+|+||..++.|+.|++.|++|++...++
T Consensus        85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~  155 (518)
T KOG1941|consen   85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNN  155 (518)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhcc
Confidence            89999999999999999999999998875433     3678889999999999999999999999985544

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.54  E-value=0.0042  Score=55.92  Aligned_cols=60  Identities=25%  Similarity=0.451  Sum_probs=56.0

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 015006          244 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  303 (414)
Q Consensus       244 ~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~  303 (414)
                      ...+.++.+.|.+.+.++|++-|.+...|||.|.-..+.|+++.|.+.|.+.|+++|++.
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            345678999999999999999999999999999999999999999999999999999864

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.49  E-value=0.018  Score=58.94  Aligned_cols=99  Identities=18%  Similarity=0.259  Sum_probs=79.2

Q ss_pred             HHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 015006          189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  268 (414)
Q Consensus       189 ~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~  268 (414)
                      +...|..+..+|+.+.|+..|++++.    .    .   ..+.++...++..+|.|++-+.+|++|..++.+.++.+ .+
T Consensus       270 l~~~gR~~~~~g~~~~Ai~~~~~a~~----~----q---~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~W  337 (468)
T PF10300_consen  270 LFFEGRLERLKGNLEEAIESFERAIE----S----Q---SEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KW  337 (468)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHhcc----c----h---hhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-cc
Confidence            55677888889999999999999885    1    1   12345557799999999999999999999999988855 46


Q ss_pred             HHHH--HHHHHHHHHcCCH-------HHHHHHHHHHHhhC
Q 015006          269 VKGL--YRRGMAYMALGEF-------EEAQRDFEMMMKVD  299 (414)
Q Consensus       269 ~ka~--~r~g~a~~~l~~~-------~eA~~~~~~al~l~  299 (414)
                      .+|+  |-.|.|+..+++.       ++|.+.|.++-.+-
T Consensus       338 Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~  377 (468)
T PF10300_consen  338 SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK  377 (468)
T ss_pred             HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence            6766  4568899999999       88888888776653

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.42  E-value=0.064  Score=54.61  Aligned_cols=121  Identities=21%  Similarity=0.274  Sum_probs=84.4

Q ss_pred             HHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHH-----------------HHHhh-----hhhHHHHHHHHH
Q 015006          187 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG-----------------KVFVG-----KRNLLHLNVAAC  244 (414)
Q Consensus       187 ~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~-----------------~~~~~-----~~~~~~~N~a~~  244 (414)
                      ..+...-|.+-+.++|++|+....+.+.    ..|++...-                 .....     ......+-.|.|
T Consensus        13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~----~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc   88 (652)
T KOG2376|consen   13 EALLTDLNRHGKNGEYEEAVKTANKILS----IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYC   88 (652)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHh----cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHH
Confidence            3444555667778889999888888887    344432211                 00000     111223678999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHH
Q 015006          245 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS-EPDATAALSKLK  314 (414)
Q Consensus       245 ~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n-~~~~~~~l~~~~  314 (414)
                      +++++..++|+...+   -+++...+.+.-+|+.++.+++|++|+..|+..++-+-++ +.+.+.++..+.
T Consensus        89 ~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~  156 (652)
T KOG2376|consen   89 EYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA  156 (652)
T ss_pred             HHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence            999999999999988   5677778999999999999999999999999998776543 233444444443

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=96.41  E-value=0.027  Score=49.08  Aligned_cols=63  Identities=22%  Similarity=0.309  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          251 CRKSIEACNKVLDANPAHVKGLYRRGMAYMALGE----------FEEAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       251 ~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~----------~~eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                      |+.|.+.+..+...+|.++.+++|-|-|+..+.+          +++|+.-|+.||.++|+. .++.-.+..+.
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~-hdAlw~lGnA~   79 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNK-HDALWCLGNAY   79 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCch-HHHHHHHHHHH
Confidence            7889999999999999999999999999999855          467899999999999996 55555555443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=96.40  E-value=0.033  Score=57.41  Aligned_cols=77  Identities=19%  Similarity=0.211  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          237 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       237 ~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                      +++=.+.++...|++++|+.+....-..-.+....+-.+|.+++.+|++++|...|...|+.+|+| ......|..+.
T Consensus         6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn-~~Yy~~L~~~~   82 (517)
T PF12569_consen    6 LLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDN-YDYYRGLEEAL   82 (517)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-HHHHHHHHHHH
Confidence            333456777889999999999988877778889999999999999999999999999999999998 55666666654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.35  E-value=0.14  Score=52.17  Aligned_cols=131  Identities=15%  Similarity=0.272  Sum_probs=86.1

Q ss_pred             hhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----
Q 015006          191 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN-----  265 (414)
Q Consensus       191 ~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d-----  265 (414)
                      +++-.+|+.++.++|+..++       .+++.+           ..+..-+|..++++++|++|+..|...++-+     
T Consensus        84 EKAYc~Yrlnk~Dealk~~~-------~~~~~~-----------~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d  145 (652)
T KOG2376|consen   84 EKAYCEYRLNKLDEALKTLK-------GLDRLD-----------DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQD  145 (652)
T ss_pred             HHHHHHHHcccHHHHHHHHh-------cccccc-----------hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHH
Confidence            44445556666666666655       122222           2345558999999999999999998875332     


Q ss_pred             -------------------------C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCCCHHHHHHHHHH
Q 015006          266 -------------------------P-AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV-------DKSSEPDATAALSK  312 (414)
Q Consensus       266 -------------------------p-~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l-------~P~n~~~~~~~l~~  312 (414)
                                               | +.-.-+|+.|.++...|+|.+|++.+++|+++       +-.++.++..++..
T Consensus       146 ~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~  225 (652)
T KOG2376|consen  146 EERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNP  225 (652)
T ss_pred             HHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHH
Confidence                                     2 24567899999999999999999999999554       22333566777776


Q ss_pred             HHHHH------HHHHHHHHHHHHhhccCCCCCc
Q 015006          313 LKKQR------QEVESKARKQFKGLFDKKPGEI  339 (414)
Q Consensus       313 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~  339 (414)
                      ++-++      .-+.++....|...+.....+.
T Consensus       226 IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~  258 (652)
T KOG2376|consen  226 IRVQLAYVLQLQGQTAEASSIYVDIIKRNPADE  258 (652)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCc
Confidence            65332      1233444556777776654443

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.34  E-value=0.0068  Score=36.96  Aligned_cols=32  Identities=25%  Similarity=0.506  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 015006          237 LHLNVAACLLKLGECRKSIEACNKVLDANPAH  268 (414)
Q Consensus       237 ~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~  268 (414)
                      +++++|.|+.++|++++|+..++++++..|++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            57899999999999999999999999998874

>smart00028 TPR Tetratricopeptide repeats

Probab=96.33  E-value=0.0069  Score=35.67  Aligned_cols=33  Identities=27%  Similarity=0.471  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 015006          236 LLHLNVAACLLKLGECRKSIEACNKVLDANPAH  268 (414)
Q Consensus       236 ~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~  268 (414)
                      .++.++|.|+..++++..|+..+.+++.++|.+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            368899999999999999999999999998853

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.32  E-value=0.01  Score=56.88  Aligned_cols=99  Identities=20%  Similarity=0.215  Sum_probs=81.3

Q ss_pred             hhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---
Q 015006          191 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA---  267 (414)
Q Consensus       191 ~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~---  267 (414)
                      ..|+.+...+.|++|++.|++|+++........         +...++..++..|-.+++|++|+-+..+|+++-.+   
T Consensus       127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~---------LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l  197 (518)
T KOG1941|consen  127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAM---------LELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGL  197 (518)
T ss_pred             hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCce---------eeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCc
Confidence            378888999999999999999999754332211         22457888999999999999999999999877432   


Q ss_pred             -------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006          268 -------HVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  298 (414)
Q Consensus       268 -------~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l  298 (414)
                             ..-++|+++.++..+|++-.|.+.++.|.++
T Consensus       198 ~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl  235 (518)
T KOG1941|consen  198 KDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL  235 (518)
T ss_pred             CchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence                   2457899999999999999999999999876

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.32  E-value=0.0075  Score=38.09  Aligned_cols=29  Identities=21%  Similarity=0.221  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          237 LHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       237 ~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +|.|+|.+|.++|+|++|+..++++|.+.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            47899999999999999999999966543

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.23  E-value=0.028  Score=51.29  Aligned_cols=98  Identities=10%  Similarity=0.125  Sum_probs=69.8

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015006          235 NLLHLNVAACLLKLGECRKSIEACNKVLDA------------------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM  296 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~------------------dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al  296 (414)
                      +.++--.|.-++++|+|.+|...|..|+..                  +..+.--+.+.++|++..++|-++++.+..+|
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL  257 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL  257 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence            346666888899999999999999888632                  22345678899999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhccCC
Q 015006          297 KVDKSSEPDATAALSKLKKQRQEVESK-ARKQFKGLFDKK  335 (414)
Q Consensus       297 ~l~P~n~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~  335 (414)
                      ..+|.|   ++....+.+......+.. .+.-+++.+...
T Consensus       258 ~~~~~n---vKA~frRakAhaa~Wn~~eA~~D~~~vL~ld  294 (329)
T KOG0545|consen  258 RHHPGN---VKAYFRRAKAHAAVWNEAEAKADLQKVLELD  294 (329)
T ss_pred             hcCCch---HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence            999998   344445544444333222 233344444443

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.22  E-value=0.075  Score=46.22  Aligned_cols=95  Identities=31%  Similarity=0.510  Sum_probs=72.3

Q ss_pred             cccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHH
Q 015006          195 RLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA-HVKGLY  273 (414)
Q Consensus       195 ~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~-~~ka~~  273 (414)
                      .++..|++..|+..|.+++.    ..+..        ......+.+++..+...+++..|+..+.+++...+. ...+++
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~----~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  206 (291)
T COG0457         139 ALYELGDYEEALELYEKALE----LDPEL--------NELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALL  206 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHh----cCCCc--------cchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHH
Confidence            77788899999999999866    33310        001334555555577788888888888888888888 688888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015006          274 RRGMAYMALGEFEEAQRDFEMMMKVDKS  301 (414)
Q Consensus       274 r~g~a~~~l~~~~eA~~~~~~al~l~P~  301 (414)
                      .++.++...+.+.+|+..+..++...|.
T Consensus       207 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~  234 (291)
T COG0457         207 NLGLLYLKLGKYEEALEYYEKALELDPD  234 (291)
T ss_pred             HhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence            8888888888888888888888888876

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.19  E-value=0.025  Score=53.22  Aligned_cols=68  Identities=19%  Similarity=0.208  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 015006          236 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  303 (414)
Q Consensus       236 ~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~  303 (414)
                      .+-+|.|.-..+.|+.++|...+.-||.++|.++.++.+.|+....-++.-+|-.+|-+||.++|.|.
T Consensus       117 ~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns  184 (472)
T KOG3824|consen  117 ILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNS  184 (472)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch
Confidence            34556777778899999999999999999999999999999999999999999999999999999984

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.18  E-value=0.18  Score=49.07  Aligned_cols=118  Identities=13%  Similarity=0.107  Sum_probs=91.4

Q ss_pred             hhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015006          181 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK  260 (414)
Q Consensus       181 e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~  260 (414)
                      .+..+|...-..|-.-+-.|+|..|.+.-.++-+    ..+.           ...+|.--|.+...+|+++.|=.+..+
T Consensus        79 rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae----~~e~-----------p~l~~l~aA~AA~qrgd~~~an~yL~e  143 (400)
T COG3071          79 RKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAE----HGEQ-----------PVLAYLLAAEAAQQRGDEDRANRYLAE  143 (400)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhh----cCcc-----------hHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            4566788888899999999999999999988776    2211           245667677888889999999999988


Q ss_pred             HHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          261 VLDANP-AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       261 al~~dp-~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                      +-+..+ ++.-.+.-+++.+...|++..|...+.+++++.|.+ +.+.....++.
T Consensus       144 aae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~-~~vlrLa~r~y  197 (400)
T COG3071         144 AAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRH-PEVLRLALRAY  197 (400)
T ss_pred             HhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCC-hHHHHHHHHHH
Confidence            888833 456677888899999999999999999999999988 44444444443

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.04  E-value=0.049  Score=42.29  Aligned_cols=65  Identities=25%  Similarity=0.338  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHHHH
Q 015006          254 SIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS-EPDATAALSKLKKQRQ  318 (414)
Q Consensus       254 A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n-~~~~~~~l~~~~~~~~  318 (414)
                      .+..+.++++.+|+++.+.|.+|.+++..|++++|++.|..+++.+++. ...++..+-.+-..+.
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg   72 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLG   72 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcC
Confidence            3567788999999999999999999999999999999999999998864 2356666665554443

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.02  E-value=0.14  Score=46.53  Aligned_cols=103  Identities=21%  Similarity=0.261  Sum_probs=76.0

Q ss_pred             hhhcccccc-ccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-
Q 015006          191 VTGNRLFKE-GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH-  268 (414)
Q Consensus       191 ~~Gn~~fk~-g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~-  268 (414)
                      +.|..+-.. .+++.|+.+|.+|-.++..-..         ......|++..|.--..+++|.+|+..++++....-+| 
T Consensus       118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees---------~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~  188 (288)
T KOG1586|consen  118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEES---------VSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN  188 (288)
T ss_pred             hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhh---------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            444333333 6889999999999987653211         22335677777877888999999999999987654433 


Q ss_pred             -----HHHH-HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          269 -----VKGL-YRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       269 -----~ka~-~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                           +|.| ++.|.||+-..+.-.|...+++-.+++|..
T Consensus       189 LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F  228 (288)
T KOG1586|consen  189 LLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF  228 (288)
T ss_pred             HHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence                 5554 566888888889889999999999999976

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.94  E-value=0.085  Score=45.85  Aligned_cols=102  Identities=30%  Similarity=0.406  Sum_probs=83.2

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHH-HHHHcCCHHHHHHHHHHHHH
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA-CLLKLGECRKSIEACNKVLD  263 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~-~~~kl~~~~~A~~~~~~al~  263 (414)
                      ....+...|......+++..|+..+..++.    ..+.+           .......+. ++...+++..|+..+.+++.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-----------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  158 (291)
T COG0457          94 LAEALLNLGLLLEALGKYEEALELLEKALA----LDPDP-----------DLAEALLALGALYELGDYEEALELYEKALE  158 (291)
T ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHHHHHHc----CCCCc-----------chHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            355667778888888889999999999998    33333           112222333 89999999999999999999


Q ss_pred             hCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015006          264 ANP---AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  301 (414)
Q Consensus       264 ~dp---~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~  301 (414)
                      .+|   .....++.++..+...++++.|+..+.+++...+.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  199 (291)
T COG0457         159 LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD  199 (291)
T ss_pred             cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence            887   56788888888889999999999999999999988

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=95.91  E-value=0.063  Score=49.51  Aligned_cols=69  Identities=14%  Similarity=0.167  Sum_probs=63.1

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 015006          235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPA---HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  303 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~---~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~  303 (414)
                      ..-++|-|...+.-|+|.+|+..++.+....|.   ..++.+-++.|+++.++|++|+..+++-+++.|.++
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~  105 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHP  105 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Confidence            567888999999999999999999999988775   478999999999999999999999999999999874

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=95.77  E-value=0.059  Score=43.16  Aligned_cols=103  Identities=13%  Similarity=0.183  Sum_probs=70.0

Q ss_pred             hhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHH----HHHcCCHHHHHHHHHHHHHhCCC
Q 015006          192 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC----LLKLGECRKSIEACNKVLDANPA  267 (414)
Q Consensus       192 ~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~----~~kl~~~~~A~~~~~~al~~dp~  267 (414)
                      .+..+|.+|++-+|++.-++.+.    ..+.+...+ .++.+...++..+|..    -.|.--...+++.+.++..+.|.
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~----~h~~~~~~~-~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~   76 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLIS----RHGEDESSW-LLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPD   76 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHH----HccCCCchH-HHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChh
Confidence            45678999999999999999987    333332111 2222223333333321    11111245678888999999999


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015006          268 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  299 (414)
Q Consensus       268 ~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~  299 (414)
                      .+..+|.+|+-+-....|++++...+++|.+.
T Consensus        77 ~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~  108 (111)
T PF04781_consen   77 SAHSLFELASQLGSVKYYKKAVKKAKRGLSVT  108 (111)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence            98899999888888888888988888888763

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=95.74  E-value=0.1  Score=48.65  Aligned_cols=71  Identities=23%  Similarity=0.323  Sum_probs=66.2

Q ss_pred             hhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          232 GKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       232 ~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      .....+..|+=..++..++|..|+.+..+.|.++|.++-.+.-+|-+|.++|.+.-|+.++...++..|+.
T Consensus       178 ~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~  248 (269)
T COG2912         178 EILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDD  248 (269)
T ss_pred             HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCc
Confidence            34466788888999999999999999999999999999999999999999999999999999999999986

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.68  E-value=0.3  Score=46.39  Aligned_cols=123  Identities=13%  Similarity=-0.003  Sum_probs=89.5

Q ss_pred             CCchhhhhHHHHHHHhhhccccccc-cHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHH
Q 015006          176 GLSFDGIMDEAEKIRVTGNRLFKEG-KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKS  254 (414)
Q Consensus       176 ~~~~~e~~~~a~~~k~~Gn~~fk~g-~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A  254 (414)
                      .++++.....+..+.+-|..+++++ +|..|+...++|.++++.. +..........+++..++..++.+|+..+.++..
T Consensus        25 ~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~-~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~  103 (278)
T PF08631_consen   25 SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKP-GKMDKLSPDGSELRLSILRLLANAYLEWDTYESV  103 (278)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhh-hhccccCCcHHHHHHHHHHHHHHHHHcCCChHHH
Confidence            4566777788999999999999999 9999999999999987531 1111112234567888999999999999987654


Q ss_pred             HHHHHHHHH----hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 015006          255 IEACNKVLD----ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK  300 (414)
Q Consensus       255 ~~~~~~al~----~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P  300 (414)
                      .. |..+++    --|+.+-.++-.=.++...++.+++.+.+.+++.--+
T Consensus       104 ~k-a~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen  104 EK-ALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HH-HHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence            44 444443    3366666664555556667889999998988887643

It is also involved in sporulation [].

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.60  E-value=0.0041  Score=59.17  Aligned_cols=59  Identities=22%  Similarity=0.345  Sum_probs=55.0

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 015006          245 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  303 (414)
Q Consensus       245 ~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~  303 (414)
                      .+..|.++.|+++|..+|.++|.++--|-.||.+++++++...|+.+|..|++++|+..
T Consensus       124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa  182 (377)
T KOG1308|consen  124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSA  182 (377)
T ss_pred             HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccc
Confidence            34568899999999999999999999999999999999999999999999999999863

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=95.60  E-value=0.69  Score=46.58  Aligned_cols=110  Identities=14%  Similarity=0.045  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 015006          202 FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA  281 (414)
Q Consensus       202 y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~  281 (414)
                      ...-...|+.|+.-    .+.+           ..++++-..-..|.+.|.+.-..|.++|...|+++..|.--|.=.+.
T Consensus        87 ~~rIv~lyr~at~r----f~~D-----------~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe  151 (568)
T KOG2396|consen   87 PNRIVFLYRRATNR----FNGD-----------VKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFE  151 (568)
T ss_pred             HHHHHHHHHHHHHh----cCCC-----------HHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHh
Confidence            34456778888874    3334           66777776666677779999999999999999999999999988888


Q ss_pred             cCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015006          282 LGE-FEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQ  327 (414)
Q Consensus       282 l~~-~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~~~~~  327 (414)
                      .+. .+.|++.|.++|+.+|++ +.+..+.-++.-...+.-..++..
T Consensus       152 ~n~ni~saRalflrgLR~npds-p~Lw~eyfrmEL~~~~Kl~~rr~~  197 (568)
T KOG2396|consen  152 INLNIESARALFLRGLRFNPDS-PKLWKEYFRMELMYAEKLRNRREE  197 (568)
T ss_pred             hccchHHHHHHHHHHhhcCCCC-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            876 999999999999999998 677777766654444333333333

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.47  E-value=0.17  Score=44.69  Aligned_cols=102  Identities=18%  Similarity=0.137  Sum_probs=76.9

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      -..+.+.|+.+++.|++..|++.|.++..++..            ......+++++..+.+-.++|..+..+..+|-.+-
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~------------~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~  103 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTS------------PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI  103 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC------------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            456778999999999999999999998885321            22346788899999999999999999999886543


Q ss_pred             C--CcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015006          266 P--AHVK----GLYRRGMAYMALGEFEEAQRDFEMMMKVD  299 (414)
Q Consensus       266 p--~~~k----a~~r~g~a~~~l~~~~eA~~~~~~al~l~  299 (414)
                      .  .++.    .....|.+++..++|..|-..|-.++.-.
T Consensus       104 ~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  104 EKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             hccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence            2  2222    22234677778899999998887765443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.42  E-value=0.56  Score=44.24  Aligned_cols=111  Identities=20%  Similarity=0.285  Sum_probs=81.2

Q ss_pred             HHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH--------
Q 015006          189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK--------  260 (414)
Q Consensus       189 ~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~--------  260 (414)
                      ...++..+...|++..|...|..++.    ..|.+           ..+..-+|.||+.+|+.+.|...+..        
T Consensus       137 ~~~~~~~~~~~e~~~~a~~~~~~al~----~~~~~-----------~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~  201 (304)
T COG3118         137 ALAEAKELIEAEDFGEAAPLLKQALQ----AAPEN-----------SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK  201 (304)
T ss_pred             HHHHhhhhhhccchhhHHHHHHHHHH----hCccc-----------chHHHHHHHHHHHcCChHHHHHHHHhCcccchhh
Confidence            45677889999999999999999999    45554           34556688888888887555443322        


Q ss_pred             --------------------------HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHH
Q 015006          261 --------------------------VLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS-EPDATAALSKL  313 (414)
Q Consensus       261 --------------------------al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n-~~~~~~~l~~~  313 (414)
                                                .+..||++..+-+.+|..+...|+.++|.+.|-..++.+-.. +..+++.|-.+
T Consensus       202 ~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~  281 (304)
T COG3118         202 AAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLEL  281 (304)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHH
Confidence                                      224568999999999999999999999999998888875431 12355444444


Q ss_pred             H
Q 015006          314 K  314 (414)
Q Consensus       314 ~  314 (414)
                      -
T Consensus       282 f  282 (304)
T COG3118         282 F  282 (304)
T ss_pred             H
Confidence            3

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=95.37  E-value=0.19  Score=52.03  Aligned_cols=122  Identities=12%  Similarity=0.031  Sum_probs=91.5

Q ss_pred             ccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 015006          198 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGM  277 (414)
Q Consensus       198 k~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~  277 (414)
                      -.++.++|+++...+|+.    .|..           ..+|+-+|..+-.+++.+.|...|..-++..|..+--|.-++.
T Consensus       663 ~ld~~eeA~rllEe~lk~----fp~f-----------~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLak  727 (913)
T KOG0495|consen  663 YLDNVEEALRLLEEALKS----FPDF-----------HKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAK  727 (913)
T ss_pred             HhhhHHHHHHHHHHHHHh----CCch-----------HHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHH
Confidence            446677788888888874    3333           5789999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccCCCC
Q 015006          278 AYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEV-ESKARKQFKGLFDKKPG  337 (414)
Q Consensus       278 a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~  337 (414)
                      .--..|..-.|...|.++.-.+|.| ..+  .|..++-.++.- .........+.++..++
T Consensus       728 leEk~~~~~rAR~ildrarlkNPk~-~~l--wle~Ir~ElR~gn~~~a~~lmakALQecp~  785 (913)
T KOG0495|consen  728 LEEKDGQLVRARSILDRARLKNPKN-ALL--WLESIRMELRAGNKEQAELLMAKALQECPS  785 (913)
T ss_pred             HHHHhcchhhHHHHHHHHHhcCCCc-chh--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence            9999999999999999999999998 334  344444333321 11223344444444443

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=95.36  E-value=0.059  Score=55.73  Aligned_cols=66  Identities=14%  Similarity=0.155  Sum_probs=56.8

Q ss_pred             HHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 015006          189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  268 (414)
Q Consensus       189 ~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~  268 (414)
                      +...|-.+...|++++|...|++|+.    +.| +           ...|..+|.++...|++++|+..+.+|+.++|..
T Consensus       423 ~~ala~~~~~~g~~~~A~~~l~rAl~----L~p-s-----------~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~  486 (517)
T PRK10153        423 YEILAVQALVKGKTDEAYQAINKAID----LEM-S-----------WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE  486 (517)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH----cCC-C-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence            33455566678999999999999999    665 3           4589999999999999999999999999999988


Q ss_pred             HH
Q 015006          269 VK  270 (414)
Q Consensus       269 ~k  270 (414)
                      +.
T Consensus       487 pt  488 (517)
T PRK10153        487 NT  488 (517)
T ss_pred             ch
Confidence            75

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=95.34  E-value=0.21  Score=40.65  Aligned_cols=115  Identities=19%  Similarity=0.192  Sum_probs=78.3

Q ss_pred             HHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHH----HHHHh
Q 015006          189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN----KVLDA  264 (414)
Q Consensus       189 ~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~----~al~~  264 (414)
                      +-..|+..|+.+++-.|+-.|++|+.....+...++.+...+.-..+...-|+|.-+..+|+-+-.+++.+    +++.+
T Consensus         4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL   83 (140)
T PF10952_consen    4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL   83 (140)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence            44678889999999999999999999877665444444445555566778899999999999988888775    56777


Q ss_pred             CCCcHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 015006          265 NPAHVKGLYRRGMA-YMALGEFEEAQRDFEMMMKVDKSSEPDATAALS  311 (414)
Q Consensus       265 dp~~~ka~~r~g~a-~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~  311 (414)
                      -|..+..-   ..+ --.+|--..|+-+|   ++..|+  +.+.+.++
T Consensus        84 iPQCp~~~---C~afi~sLGCCk~ALl~F---~KRHPN--P~iA~~vq  123 (140)
T PF10952_consen   84 IPQCPNTE---CEAFIDSLGCCKKALLDF---MKRHPN--PEIARLVQ  123 (140)
T ss_pred             ccCCCCcc---hHHHHHhhhccHHHHHHH---HHhCCC--HHHHHHHH
Confidence            77654321   112 22344445555444   466776  44544443

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.32  E-value=0.17  Score=47.67  Aligned_cols=83  Identities=12%  Similarity=0.124  Sum_probs=66.8

Q ss_pred             ccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 015006          198 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGM  277 (414)
Q Consensus       198 k~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~  277 (414)
                      +..+|..|+++..--.+    ..|.+           ...++-+|.||+...+|..|..++++.-.+-|...+-.+..|+
T Consensus        22 ~d~ry~DaI~~l~s~~E----r~p~~-----------rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQ   86 (459)
T KOG4340|consen   22 RDARYADAIQLLGSELE----RSPRS-----------RAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQ   86 (459)
T ss_pred             HHhhHHHHHHHHHHHHh----cCccc-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence            44566667666555444    44444           4567779999999999999999999999999999998889999


Q ss_pred             HHHHcCCHHHHHHHHHHH
Q 015006          278 AYMALGEFEEAQRDFEMM  295 (414)
Q Consensus       278 a~~~l~~~~eA~~~~~~a  295 (414)
                      .+++.+.|..|+......
T Consensus        87 SLY~A~i~ADALrV~~~~  104 (459)
T KOG4340|consen   87 SLYKACIYADALRVAFLL  104 (459)
T ss_pred             HHHHhcccHHHHHHHHHh
Confidence            999999999998765543

>PRK04841 transcriptional regulator MalT; Provisional

Probab=95.27  E-value=0.12  Score=57.33  Aligned_cols=65  Identities=17%  Similarity=0.062  Sum_probs=52.0

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015006          235 NLLHLNVAACLLKLGECRKSIEACNKVLDANP--------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  299 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp--------~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~  299 (414)
                      ..++.++|.+++..|++..|...+.+++.+-.        ...-.+..+|.++...|++++|...+.+++.+.
T Consensus       531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~  603 (903)
T PRK04841        531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL  603 (903)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence            34678899999999999999999999887621        123345677889999999999999999998863

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.27  E-value=0.041  Score=35.31  Aligned_cols=30  Identities=17%  Similarity=0.185  Sum_probs=20.4

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          235 NLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      +.+++|+|.+|..+|+|.+|+..+.+++.+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            346677777777777777777777777654

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=95.20  E-value=0.15  Score=54.91  Aligned_cols=112  Identities=11%  Similarity=0.035  Sum_probs=68.6

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCC---------------hHH-HHHHhhh----hhHHHHHHHHHH
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQD---------------DEE-GKVFVGK----RNLLHLNVAACL  245 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~---------------~~e-~~~~~~~----~~~~~~N~a~~~  245 (414)
                      ...+...-+.+.+.|.+++|...|........ +.|..               -++ .+.+...    ....|..+..++
T Consensus       426 ~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g-~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~  504 (697)
T PLN03081        426 HVTFLAVLSACRYSGLSEQGWEIFQSMSENHR-IKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTAC  504 (697)
T ss_pred             HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC-CCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
Confidence            44455555566667777777777766654211 12211               000 0111110    134566666677


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006          246 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  298 (414)
Q Consensus       246 ~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l  298 (414)
                      .+.|+++.|...+++++.++|+++..|..+.++|...|++++|.+.++...+.
T Consensus       505 ~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~  557 (697)
T PLN03081        505 RIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK  557 (697)
T ss_pred             HHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            77788888888888888888877777777888888888888888777766543

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=95.00  E-value=0.49  Score=50.59  Aligned_cols=112  Identities=21%  Similarity=0.213  Sum_probs=79.7

Q ss_pred             ccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCcHHHHHH
Q 015006          196 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD-ANPAHVKGLYR  274 (414)
Q Consensus       196 ~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~-~dp~~~ka~~r  274 (414)
                      ....++|..|.....+.++    ..|..           ..+..--|..++++|.+++|. .|-.++. ..+++--.+--
T Consensus        19 ~ld~~qfkkal~~~~kllk----k~Pn~-----------~~a~vLkaLsl~r~gk~~ea~-~~Le~~~~~~~~D~~tLq~   82 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLK----KHPNA-----------LYAKVLKALSLFRLGKGDEAL-KLLEALYGLKGTDDLTLQF   82 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHH----HCCCc-----------HHHHHHHHHHHHHhcCchhHH-HHHhhhccCCCCchHHHHH
Confidence            3456788899999999888    44443           223333678889999999999 5555554 44566777788


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 015006          275 RGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKAR  325 (414)
Q Consensus       275 ~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~~~  325 (414)
                      +-.+|..++++++|...|++++..+|+ . +....+--+.-+...+++.++
T Consensus        83 l~~~y~d~~~~d~~~~~Ye~~~~~~P~-e-ell~~lFmayvR~~~yk~qQk  131 (932)
T KOG2053|consen   83 LQNVYRDLGKLDEAVHLYERANQKYPS-E-ELLYHLFMAYVREKSYKKQQK  131 (932)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhCCc-H-HHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999999999999998 3 344444444444444444333

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.95  E-value=0.3  Score=45.28  Aligned_cols=77  Identities=21%  Similarity=0.299  Sum_probs=58.9

Q ss_pred             HHHHHHHHHc----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          239 LNVAACLLKL----GECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       239 ~N~a~~~~kl----~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                      +-+|.++.++    ..+.+|...|+..-+--|.++.-+.-+|.|++.+++|++|...++.||..+++. ++...++-.+.
T Consensus       173 tQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d-petL~Nliv~a  251 (299)
T KOG3081|consen  173 TQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD-PETLANLIVLA  251 (299)
T ss_pred             HHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC-HHHHHHHHHHH
Confidence            3355555554    357888888888777567788899999999999999999999999999999887 56666665554


Q ss_pred             HH
Q 015006          315 KQ  316 (414)
Q Consensus       315 ~~  316 (414)
                      ..
T Consensus       252 ~~  253 (299)
T KOG3081|consen  252 LH  253 (299)
T ss_pred             HH
Confidence            43

>PRK04841 transcriptional regulator MalT; Provisional

Probab=94.92  E-value=0.2  Score=55.53  Aligned_cols=64  Identities=16%  Similarity=0.149  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015006          236 LLHLNVAACLLKLGECRKSIEACNKVLDANP-----AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  299 (414)
Q Consensus       236 ~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp-----~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~  299 (414)
                      .++.++|.+++..|++++|...+.+++.+..     ..+.++..+|.++...|++++|...+.+++.+.
T Consensus       574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~  642 (903)
T PRK04841        574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLL  642 (903)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            3567889999999999999999999987632     235677779999999999999999999998763

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=94.75  E-value=0.075  Score=50.07  Aligned_cols=84  Identities=20%  Similarity=0.221  Sum_probs=67.7

Q ss_pred             hHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015006          183 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  262 (414)
Q Consensus       183 ~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al  262 (414)
                      +..|......+....+.|+.++|...|..|+.    +.|.+           ..++..++...-.-++.-+|-++|.+||
T Consensus       113 ~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAla----laP~~-----------p~~L~e~G~f~E~~~~iv~ADq~Y~~AL  177 (472)
T KOG3824|consen  113 VKEAILALKAAGRSRKDGKLEKAMTLFEHALA----LAPTN-----------PQILIEMGQFREMHNEIVEADQCYVKAL  177 (472)
T ss_pred             hHHHHHHHHHHHHHHhccchHHHHHHHHHHHh----cCCCC-----------HHHHHHHhHHHHhhhhhHhhhhhhheee
Confidence            33455555566678899999999999999999    78888           4466667776666678888999999999


Q ss_pred             HhCCCcHHHHHHHHHHHHH
Q 015006          263 DANPAHVKGLYRRGMAYMA  281 (414)
Q Consensus       263 ~~dp~~~ka~~r~g~a~~~  281 (414)
                      .++|.|.+|+-+|++..--
T Consensus       178 tisP~nseALvnR~RT~pl  196 (472)
T KOG3824|consen  178 TISPGNSEALVNRARTTPL  196 (472)
T ss_pred             eeCCCchHHHhhhhccchH
Confidence            9999999999999876543

>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=94.75  E-value=0.033  Score=48.06  Aligned_cols=24  Identities=8%  Similarity=0.061  Sum_probs=22.4

Q ss_pred             ccccCCcCcEEEEEEcCCCcCCCC
Q 015006            2 GIGTMTREEKAVIYVTSQYLTPSP   25 (414)
Q Consensus         2 ~~~~m~~Ge~~~~~i~~~~~~g~~   25 (414)
                      ||.+|++||++.|.|||++|||..
T Consensus        51 aL~gm~~Ge~~~v~ipp~~ayG~~   74 (156)
T PRK15095         51 QLLGLKVGDKKTFSLEPEAAFGVP   74 (156)
T ss_pred             HHcCCCCCCEEEEEEChHHhcCCC
Confidence            688999999999999999999974

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=94.71  E-value=0.18  Score=37.67  Aligned_cols=68  Identities=16%  Similarity=0.232  Sum_probs=54.3

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      .+....+.|..+|...+...|+..++++|+.    .+..+        .+..++.-++.+|...|+|.+++.++..=+++
T Consensus         5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k----~~~~~--------~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    5 QAKQQIEKGLKLYHQNETQQALQKWRKALEK----ITDRE--------DRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhh----cCChH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677889999999999999999999999994    33321        23567777889999999999999988765543

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.67  E-value=0.11  Score=52.00  Aligned_cols=95  Identities=13%  Similarity=0.097  Sum_probs=73.9

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHh-hcccC----CCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLR-DFNHV----NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK  260 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~-~~~~~----~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~  260 (414)
                      +.-+.+.|-.+|+.|.|..++..|.+||+ .+..+    .|..  .......-...+.+|.+..|+..|+...|.+++.+
T Consensus       283 cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~--~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~  360 (696)
T KOG2471|consen  283 CIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAK--TFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQK  360 (696)
T ss_pred             heeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCc--ceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHH
Confidence            44457899999999999999999999996 33222    1111  00111222345889999999999999999999999


Q ss_pred             HHHhCCCcHHHHHHHHHHHHHc
Q 015006          261 VLDANPAHVKGLYRRGMAYMAL  282 (414)
Q Consensus       261 al~~dp~~~ka~~r~g~a~~~l  282 (414)
                      +...-..|+.-|.|+|.|.+..
T Consensus       361 av~vfh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  361 AVHVFHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             HHHHHhcCcHHHHHHHHHHHHH
Confidence            9999999999999999998764

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.65  E-value=0.059  Score=53.75  Aligned_cols=118  Identities=16%  Similarity=0.119  Sum_probs=82.2

Q ss_pred             HHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h---
Q 015006          189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD-A---  264 (414)
Q Consensus       189 ~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~-~---  264 (414)
                      +.-+.+..|-.|+|..|.+.....--.   ..+...   ..-+-.....++|++..++.++.|.-++..|.+||+ .   
T Consensus       243 l~LKsq~eY~~gn~~kA~KlL~~sni~---~~~g~~---~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~q  316 (696)
T KOG2471|consen  243 LLLKSQLEYAHGNHPKAMKLLLVSNIH---KEAGGT---ITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQ  316 (696)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHhcccc---cccCcc---ccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHH
Confidence            344456677778888777765432210   111110   000111234568999999999999999999999995 2   


Q ss_pred             -----CC---------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 015006          265 -----NP---------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  313 (414)
Q Consensus       265 -----dp---------~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~  313 (414)
                           .|         .....+|+.|.++...|+.-.|.++|.+|......| +.++..|..+
T Consensus       317 L~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n-PrlWLRlAEc  378 (696)
T KOG2471|consen  317 LRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN-PRLWLRLAEC  378 (696)
T ss_pred             HhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC-cHHHHHHHHH
Confidence                 11         346789999999999999999999999999998887 5566555554

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.37  E-value=0.076  Score=33.96  Aligned_cols=30  Identities=20%  Similarity=0.272  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015006          270 KGLYRRGMAYMALGEFEEAQRDFEMMMKVD  299 (414)
Q Consensus       270 ka~~r~g~a~~~l~~~~eA~~~~~~al~l~  299 (414)
                      ..|.++|.+-+..++|++|+.+|++||++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            468899999999999999999999999873

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=94.01  E-value=0.75  Score=44.92  Aligned_cols=107  Identities=22%  Similarity=0.205  Sum_probs=77.2

Q ss_pred             HhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 015006          190 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV  269 (414)
Q Consensus       190 k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~  269 (414)
                      ...+..+...|++++|.+.-..+++.     ..++           .++  +=.-.++.+++..=++..++.++..|+++
T Consensus       267 ~~~a~~li~l~~~~~A~~~i~~~Lk~-----~~D~-----------~L~--~~~~~l~~~d~~~l~k~~e~~l~~h~~~p  328 (400)
T COG3071         267 VAYAERLIRLGDHDEAQEIIEDALKR-----QWDP-----------RLC--RLIPRLRPGDPEPLIKAAEKWLKQHPEDP  328 (400)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHh-----ccCh-----------hHH--HHHhhcCCCCchHHHHHHHHHHHhCCCCh
Confidence            34444555677888888888888872     1111           111  11223577888899999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 015006          270 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  316 (414)
Q Consensus       270 ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~  316 (414)
                      ..++-+|+.+++.+.|.+|...|+.|++..|+.  .-...+..+-.+
T Consensus       329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~--~~~~~la~~~~~  373 (400)
T COG3071         329 LLLSTLGRLALKNKLWGKASEALEAALKLRPSA--SDYAELADALDQ  373 (400)
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh--hhHHHHHHHHHH
Confidence            999999999999999999999999999999874  344455544433

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=93.90  E-value=0.45  Score=47.91  Aligned_cols=123  Identities=12%  Similarity=0.105  Sum_probs=83.8

Q ss_pred             CCCCchhhhhHHHHHHHhhhc----ccc-----ccccHHHHHHHHHHHHhhcccCCCCCh------HHHHHH--hh--hh
Q 015006          174 WTGLSFDGIMDEAEKIRVTGN----RLF-----KEGKFELAKAKYEKVLRDFNHVNPQDD------EEGKVF--VG--KR  234 (414)
Q Consensus       174 ~~~~~~~e~~~~a~~~k~~Gn----~~f-----k~g~y~~A~~~Y~~al~~~~~~~p~~~------~e~~~~--~~--~~  234 (414)
                      |.+-++..+++.|.+-.+.-.    .+.     ......+|...|++|++.-+..-..+.      ...+..  ++  ..
T Consensus       179 WRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~  258 (539)
T PF04184_consen  179 WRERNPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVL  258 (539)
T ss_pred             HhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchh
Confidence            456677788877665433222    111     123468889999998875432211110      000111  11  22


Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015006          235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPA--HVKGLYRRGMAYMALGEFEEAQRDFEMMM  296 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~--~~ka~~r~g~a~~~l~~~~eA~~~~~~al  296 (414)
                      .-+...+|+|..++|+.++|++.+...++..|.  +...++++-.+++.++.|.++...+.+-=
T Consensus       259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd  322 (539)
T PF04184_consen  259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD  322 (539)
T ss_pred             hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence            345677999999999999999999999988774  67799999999999999999998888753

The molecular function of this protein is uncertain.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.89  E-value=0.14  Score=32.67  Aligned_cols=30  Identities=30%  Similarity=0.396  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006          269 VKGLYRRGMAYMALGEFEEAQRDFEMMMKV  298 (414)
Q Consensus       269 ~ka~~r~g~a~~~l~~~~eA~~~~~~al~l  298 (414)
                      +.++.++|.+|..+|++++|+..+++++.+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            457889999999999999999999999876

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.78  E-value=0.5  Score=43.34  Aligned_cols=131  Identities=11%  Similarity=0.093  Sum_probs=81.9

Q ss_pred             hhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH----HHhC-
Q 015006          191 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV----LDAN-  265 (414)
Q Consensus       191 ~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~a----l~~d-  265 (414)
                      +++-.....-+.+.|+..|++++.++..-.         .......++.-.+..+.+++.|.+|...+.+-    +..+ 
T Consensus       115 eKAak~lenv~Pd~AlqlYqralavve~~d---------r~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~  185 (308)
T KOG1585|consen  115 EKAAKALENVKPDDALQLYQRALAVVEEDD---------RDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDA  185 (308)
T ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHhccc---------hHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhh
Confidence            444455566678888888888888654221         12233567778888999999999988777653    2333 


Q ss_pred             -CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015006          266 -PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFD  333 (414)
Q Consensus       266 -p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  333 (414)
                       +.--|++.-.-.+|+...+|..|...|+....+..-+..+   .-..+++.+..+.+.....++++.+
T Consensus       186 y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~se---d~r~lenLL~ayd~gD~E~~~kvl~  251 (308)
T KOG1585|consen  186 YNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSE---DSRSLENLLTAYDEGDIEEIKKVLS  251 (308)
T ss_pred             cccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChH---HHHHHHHHHHHhccCCHHHHHHHHc
Confidence             3445566555566666779999999999988774332221   2233444455555554555555543

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=93.77  E-value=0.28  Score=50.15  Aligned_cols=101  Identities=16%  Similarity=0.200  Sum_probs=80.4

Q ss_pred             hhhcccc-ccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 015006          191 VTGNRLF-KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV  269 (414)
Q Consensus       191 ~~Gn~~f-k~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~  269 (414)
                      ..+-.|+ -+|+..+|+.+|..|+-+...   .+          .-.+++.+|..+.++|.-.+|--....|+.-.|.-.
T Consensus       217 ~~as~YWR~~G~~~~A~~Ca~~a~hf~~~---h~----------kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t  283 (886)
T KOG4507|consen  217 NMASFYWRIKGEPYQAVECAMRALHFSSR---HN----------KDIALLSLATVLHRAGFSADAAVILHAALDDADFFT  283 (886)
T ss_pred             HHHHHHHHHcCChhhhhHHHHHHhhhCCc---cc----------ccchhhhHHHHHHHcccccchhheeehhccCCcccc
Confidence            3333333 578999999999999984322   11          134677899999999999988887888887777666


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 015006          270 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP  304 (414)
Q Consensus       270 ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~  304 (414)
                      .-+|-+|+++..++.|.-....|..|++.+|...+
T Consensus       284 ~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q  318 (886)
T KOG4507|consen  284 SNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQ  318 (886)
T ss_pred             ccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhH
Confidence            67999999999999999999999999999997644

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.72  E-value=0.51  Score=45.24  Aligned_cols=107  Identities=17%  Similarity=0.135  Sum_probs=75.6

Q ss_pred             HHHHhhhccccccccHHHHHHHHHHHHhhcccCC------------CCChH-----HHHHHh------hhhhHHHHHHHH
Q 015006          187 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVN------------PQDDE-----EGKVFV------GKRNLLHLNVAA  243 (414)
Q Consensus       187 ~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~------------p~~~~-----e~~~~~------~~~~~~~~N~a~  243 (414)
                      ++....+..+|.+|++.+|...+.+.|.-++.-.            ..+.+     -.+++.      +..+-++--.|.
T Consensus       104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaF  183 (491)
T KOG2610|consen  104 EKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAF  183 (491)
T ss_pred             HhhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHh
Confidence            3445566778899999999999999887443210            00000     001110      112334445788


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 015006          244 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE  293 (414)
Q Consensus       244 ~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~  293 (414)
                      |+...|-|++|.+.+.++|++++.+..|...++.++...+++.++++...
T Consensus       184 gL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~  233 (491)
T KOG2610|consen  184 GLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMY  233 (491)
T ss_pred             hHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence            89999999999999999999999999999888888888888888887643

>PLN03218 maturation of RBCL 1; Provisional

Probab=93.68  E-value=0.84  Score=51.42  Aligned_cols=62  Identities=11%  Similarity=0.044  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006          237 LHLNVAACLLKLGECRKSIEACNKVLDAN-PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  298 (414)
Q Consensus       237 ~~~N~a~~~~kl~~~~~A~~~~~~al~~d-p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l  298 (414)
                      .|+.+..+|.+.|++++|+..+....+.+ +.+...|..+..+|.+.|++++|+..|....+.
T Consensus       581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~  643 (1060)
T PLN03218        581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK  643 (1060)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence            45556666666666666666666666554 334555555666666666666666666665543

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=93.45  E-value=1.6  Score=36.70  Aligned_cols=75  Identities=21%  Similarity=0.246  Sum_probs=53.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCC----------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006          241 VAACLLKLGECRKSIEACNKVLDANP----------------------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  298 (414)
Q Consensus       241 ~a~~~~kl~~~~~A~~~~~~al~~dp----------------------~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l  298 (414)
                      .|......++...++..+.+++.+-.                      ....++.+++.++...|++++|+..+++++.+
T Consensus        12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~   91 (146)
T PF03704_consen   12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALAL   91 (146)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence            44455566788888888888886541                      12667777888999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q 015006          299 DKSSEPDATAALSKLKKQ  316 (414)
Q Consensus       299 ~P~n~~~~~~~l~~~~~~  316 (414)
                      +|-+ ..+...+-.+...
T Consensus        92 dP~~-E~~~~~lm~~~~~  108 (146)
T PF03704_consen   92 DPYD-EEAYRLLMRALAA  108 (146)
T ss_dssp             STT--HHHHHHHHHHHHH
T ss_pred             CCCC-HHHHHHHHHHHHH
Confidence            9998 4565555555433

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=93.44  E-value=0.83  Score=40.32  Aligned_cols=66  Identities=21%  Similarity=0.279  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015006          236 LLHLNVAACLLKLGECRKSIEACNKVLD-ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  301 (414)
Q Consensus       236 ~~~~N~a~~~~kl~~~~~A~~~~~~al~-~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~  301 (414)
                      .-.+.+|.+...+|++.+|..++.+++. +-..++..+.-+++|.+.++++-+|...+++..+-+|.
T Consensus        90 qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa  156 (251)
T COG4700          90 QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA  156 (251)
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc
Confidence            3456789999999999999999999986 45677889999999999999999999999999998875

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=93.43  E-value=2  Score=42.87  Aligned_cols=72  Identities=18%  Similarity=0.206  Sum_probs=56.1

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHHH
Q 015006          242 AACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS---EPDATAALSKLKKQR  317 (414)
Q Consensus       242 a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n---~~~~~~~l~~~~~~~  317 (414)
                      |.-.+-.|+|.+|..++.=..+++| ++.++.-+|.|++...+|++|...|..   +-|++   +..+++++..|++.+
T Consensus       469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~---LP~n~~~~dskvqKAl~lCqKh~  543 (549)
T PF07079_consen  469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK---LPPNERMRDSKVQKALALCQKHL  543 (549)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh---CCCchhhHHHHHHHHHHHHHHhh
Confidence            4446688999999999999999999 999999999999999999999998764   33322   134555555555444

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=93.35  E-value=1.6  Score=43.75  Aligned_cols=99  Identities=16%  Similarity=0.152  Sum_probs=85.0

Q ss_pred             HHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 015006          189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  268 (414)
Q Consensus       189 ~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~  268 (414)
                      +..-|.---.++++..|...|.+||.    .+..+           .++++.-|-|-+|.++...|....++|+.+-|--
T Consensus        76 WikYaqwEesq~e~~RARSv~ERALd----vd~r~-----------itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV  140 (677)
T KOG1915|consen   76 WIKYAQWEESQKEIQRARSVFERALD----VDYRN-----------ITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV  140 (677)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHh----ccccc-----------chHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH
Confidence            33444444567788899999999998    44444           7899999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          269 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       269 ~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      -+.+|.--..--.+|+..-|.+.|++=++..|+.
T Consensus       141 dqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~e  174 (677)
T KOG1915|consen  141 DQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDE  174 (677)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcH
Confidence            8999988888888999999999999999999984

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.29  E-value=1.8  Score=40.38  Aligned_cols=88  Identities=19%  Similarity=0.184  Sum_probs=68.5

Q ss_pred             ccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 015006          200 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAY  279 (414)
Q Consensus       200 g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~  279 (414)
                      +++..|.-.|+..-.    ..+..           ..+.+-.|.|++.+++|++|......+|.-+++.+.++-++-.+-
T Consensus       187 ek~qdAfyifeE~s~----k~~~T-----------~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a  251 (299)
T KOG3081|consen  187 EKIQDAFYIFEELSE----KTPPT-----------PLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLA  251 (299)
T ss_pred             hhhhhHHHHHHHHhc----ccCCC-----------hHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence            346666666666444    11111           346778999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHH-hhCCCC
Q 015006          280 MALGEFEEAQRDFEMMM-KVDKSS  302 (414)
Q Consensus       280 ~~l~~~~eA~~~~~~al-~l~P~n  302 (414)
                      ..+|.-.++...+-.-| ..+|++
T Consensus       252 ~~~Gkd~~~~~r~l~QLk~~~p~h  275 (299)
T KOG3081|consen  252 LHLGKDAEVTERNLSQLKLSHPEH  275 (299)
T ss_pred             HHhCCChHHHHHHHHHHHhcCCcc
Confidence            99999877776655444 457776

>PLN03077 Protein ECB2; Provisional

Probab=93.27  E-value=1.4  Score=48.72  Aligned_cols=53  Identities=15%  Similarity=0.117  Sum_probs=32.7

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015006          244 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM  296 (414)
Q Consensus       244 ~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al  296 (414)
                      ++...++.+.|...++++++++|+++-.|..++++|...|+|++|.+..+...
T Consensus       666 ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~  718 (857)
T PLN03077        666 ACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMR  718 (857)
T ss_pred             HHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHH
Confidence            33445566666666666666666666666666666666666666666555443

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=93.21  E-value=3.3  Score=39.19  Aligned_cols=100  Identities=16%  Similarity=0.257  Sum_probs=72.4

Q ss_pred             ccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh----CC---C
Q 015006          196 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG-ECRKSIEACNKVLDA----NP---A  267 (414)
Q Consensus       196 ~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~-~~~~A~~~~~~al~~----dp---~  267 (414)
                      ..++|++..|..+|.|+-.......|..       ....+..++|.|...++.+ +|..|+...++|+++    .+   .
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~-------~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~   75 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDM-------AEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKL   75 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHH-------HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhcccc
Confidence            4578999999999999988654344433       2345778999999999999 999999999999887    21   1


Q ss_pred             -------cHHHHHHHHHHHHHcCCHHHH---HHHHHHHHhhCCCC
Q 015006          268 -------HVKGLYRRGMAYMALGEFEEA---QRDFEMMMKVDKSS  302 (414)
Q Consensus       268 -------~~ka~~r~g~a~~~l~~~~eA---~~~~~~al~l~P~n  302 (414)
                             ..+.+.-++++|+..+.++..   ...++.+-.-.|+.
T Consensus        76 ~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~  120 (278)
T PF08631_consen   76 SPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNK  120 (278)
T ss_pred             CCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCC
Confidence                   256677789999998876543   33333333334553

It is also involved in sporulation [].

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=93.10  E-value=0.5  Score=36.84  Aligned_cols=56  Identities=18%  Similarity=0.323  Sum_probs=46.5

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCC---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 015006          245 LLKLGECRKSIEACNKVLDANPA---------HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK  300 (414)
Q Consensus       245 ~~kl~~~~~A~~~~~~al~~dp~---------~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P  300 (414)
                      .++.++|..|++...+.+..-..         ..-|+.++|..+...|++++|+..++.|+++-.
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            46889999999888887765321         256889999999999999999999999998843

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=93.07  E-value=1.5  Score=41.68  Aligned_cols=89  Identities=10%  Similarity=0.035  Sum_probs=70.8

Q ss_pred             cccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 015006          199 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK-LGECRKSIEACNKVLDANPAHVKGLYRRGM  277 (414)
Q Consensus       199 ~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~k-l~~~~~A~~~~~~al~~dp~~~ka~~r~g~  277 (414)
                      .+..+.|-..|.+|+.    .....           ..+|...|..-++ .++.+.|...++.+++.-|.+...+..-..
T Consensus        14 ~~g~~~aR~vF~~a~~----~~~~~-----------~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~   78 (280)
T PF05843_consen   14 TEGIEAARKVFKRARK----DKRCT-----------YHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLD   78 (280)
T ss_dssp             HHHHHHHHHHHHHHHC----CCCS------------THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             hCChHHHHHHHHHHHc----CCCCC-----------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            3447888999999986    22222           4578778888666 567777999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          278 AYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       278 a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      -+..+++.+.|+..|++++..-|..
T Consensus        79 ~l~~~~d~~~aR~lfer~i~~l~~~  103 (280)
T PF05843_consen   79 FLIKLNDINNARALFERAISSLPKE  103 (280)
T ss_dssp             HHHHTT-HHHHHHHHHHHCCTSSCH
T ss_pred             HHHHhCcHHHHHHHHHHHHHhcCch
Confidence            9999999999999999999987764

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.94  E-value=0.41  Score=47.81  Aligned_cols=117  Identities=18%  Similarity=0.196  Sum_probs=68.7

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHc--CC-----HHHHHHHH
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL--GE-----CRKSIEAC  258 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl--~~-----~~~A~~~~  258 (414)
                      .......|-.+|..|+|.+|+..|+.+|..+.-+.-.+.++..+++++...|..-+-.+.+.+  +.     .+.....+
T Consensus       204 L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~l  283 (422)
T PF06957_consen  204 LEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNL  283 (422)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHH
Confidence            334445789999999999999999999988766666666666666666555432222222221  21     12222233


Q ss_pred             HHH-----HHhCCCcHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          259 NKV-----LDANPAHVKGLYRRG-MAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       259 ~~a-----l~~dp~~~ka~~r~g-~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      +.|     .++.|.+.---+|.| ...+++++|--|....++.|++.|..
T Consensus       284 ELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~  333 (422)
T PF06957_consen  284 ELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP  333 (422)
T ss_dssp             HHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence            333     234454433333444 34457899999999999999999986

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=92.89  E-value=1.6  Score=43.78  Aligned_cols=99  Identities=16%  Similarity=0.151  Sum_probs=71.9

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      -|..+.-.+....++.+...|.+..-.||.    ..|.+            .++-----.-+++++++.|...+.+-|+.
T Consensus       403 FaKiWlmyA~feIRq~~l~~ARkiLG~AIG----~cPK~------------KlFk~YIelElqL~efDRcRkLYEkfle~  466 (677)
T KOG1915|consen  403 FAKIWLMYAQFEIRQLNLTGARKILGNAIG----KCPKD------------KLFKGYIELELQLREFDRCRKLYEKFLEF  466 (677)
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHhc----cCCch------------hHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            344444444444555666666666666666    23332            11111222346889999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015006          265 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  299 (414)
Q Consensus       265 dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~  299 (414)
                      .|.|.-++...|..-..||+.+.|...|.-|+...
T Consensus       467 ~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp  501 (677)
T KOG1915|consen  467 SPENCYAWSKYAELETSLGDTDRARAIFELAISQP  501 (677)
T ss_pred             ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence            99999999999999999999999999999998763

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=92.70  E-value=0.71  Score=43.42  Aligned_cols=72  Identities=18%  Similarity=0.173  Sum_probs=60.6

Q ss_pred             hHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015006          224 DEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMM  295 (414)
Q Consensus       224 ~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~a  295 (414)
                      +.+.+.+..+...++.-.|..|+..|.+.+|++.|++++.++|-+...+.-+-+.++.+|+--.|+..|++.
T Consensus       268 edererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         268 EDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            345556666667778888999999999999999999999999999999999999999999977777776654

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=92.63  E-value=1  Score=43.77  Aligned_cols=111  Identities=15%  Similarity=0.132  Sum_probs=72.9

Q ss_pred             hhhccccccccHHHHHHHHHHHHh-hcccC-CCCCh-----------------HHHHHHhhhhhHHHHHHHHHHHHc---
Q 015006          191 VTGNRLFKEGKFELAKAKYEKVLR-DFNHV-NPQDD-----------------EEGKVFVGKRNLLHLNVAACLLKL---  248 (414)
Q Consensus       191 ~~Gn~~fk~g~y~~A~~~Y~~al~-~~~~~-~p~~~-----------------~e~~~~~~~~~~~~~N~a~~~~kl---  248 (414)
                      +.++.++..|+...|+......+. .+... .+...                 ..........+.+++-+|.-...+   
T Consensus       189 e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~  268 (352)
T PF02259_consen  189 EYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSK  268 (352)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccc
Confidence            344455556666778877777666 22211 00000                 001122334456777777777777   


Q ss_pred             ---CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH-----------------HHHHHHHHHHHhhCCC
Q 015006          249 ---GECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF-----------------EEAQRDFEMMMKVDKS  301 (414)
Q Consensus       249 ---~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~-----------------~eA~~~~~~al~l~P~  301 (414)
                         +.++.++..+..|+.++|.+.+++++.|..+..+=+.                 ..|+..|-+|+.+.+.
T Consensus       269 ~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  269 LSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             cccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence               7888899999999999999999999999888765221                 3478888888888776

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=92.63  E-value=0.7  Score=37.58  Aligned_cols=75  Identities=19%  Similarity=0.166  Sum_probs=55.8

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      |-.+--....+...|+|.+++..-.+||.+|+..-.-++++.+    +.+.+-+|+|.++--+|..++|+..+..+-++
T Consensus        55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGk----lWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGK----LWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHH----HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccch----hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            4445555667778899999999999999998764433434433    44778899999999999999999999988653

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.58  E-value=3  Score=38.22  Aligned_cols=98  Identities=15%  Similarity=0.182  Sum_probs=60.4

Q ss_pred             hccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----
Q 015006          193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA-----  267 (414)
Q Consensus       193 Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~-----  267 (414)
                      ||-+--.++|..|-..|-+|..+.......+         ...++|.-.+.||-+. +..+|+.+..+++++--+     
T Consensus        41 an~yklaK~w~~AG~aflkaA~~h~k~~skh---------Daat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~Grf~  110 (288)
T KOG1586|consen   41 ANMYKLAKNWSAAGDAFLKAADLHLKAGSKH---------DAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMGRFT  110 (288)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHhcCCch---------hHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhhHHH
Confidence            3333344566666666666665432222211         1256777777777555 888888888888877432     


Q ss_pred             -cHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCC
Q 015006          268 -HVKGLYRRGMAYMA-LGEFEEAQRDFEMMMKVDK  300 (414)
Q Consensus       268 -~~ka~~r~g~a~~~-l~~~~eA~~~~~~al~l~P  300 (414)
                       -++-+.-+|..|-. +.++++|+..|++|-+--.
T Consensus       111 ~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk  145 (288)
T KOG1586|consen  111 MAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYK  145 (288)
T ss_pred             HHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHc
Confidence             13334445555554 4788899999998877643

>PLN03218 maturation of RBCL 1; Provisional

Probab=92.48  E-value=2.7  Score=47.51  Aligned_cols=61  Identities=10%  Similarity=0.013  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015006          237 LHLNVAACLLKLGECRKSIEACNKVLDAN-PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK  297 (414)
Q Consensus       237 ~~~N~a~~~~kl~~~~~A~~~~~~al~~d-p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~  297 (414)
                      .|+.+..+|.+.+++++|+..+...++.. +.+...|..+..+|.+.|++++|+..|+....
T Consensus       651 TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~  712 (1060)
T PLN03218        651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS  712 (1060)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            34444444555555555555555544432 22444555555555555555555555555443

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.28  E-value=1.5  Score=45.45  Aligned_cols=67  Identities=22%  Similarity=0.210  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          236 LLHLNVAACLLKLGECRKSIEACNKVLDANPA------HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       236 ~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~------~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      .++.|-|.-++++++|..+++.|...|..-|.      .+|....++.||..+.+++.|++.++.|=+.+|.+
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~  427 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQS  427 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccc
Confidence            56778999999999999999999999876553      48889999999999999999999999999999987

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=92.04  E-value=0.71  Score=35.96  Aligned_cols=64  Identities=13%  Similarity=0.195  Sum_probs=47.3

Q ss_pred             ccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          196 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       196 ~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      ..+.|+|..|+..+.+...+.........      ......+.+|+|.++...|++++|+..++.|+.+-
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~------~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSS------NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA   71 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchh------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            35679999999999888875432211110      11234568899999999999999999999998774

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=92.03  E-value=0.74  Score=49.66  Aligned_cols=110  Identities=14%  Similarity=0.019  Sum_probs=75.3

Q ss_pred             HHHhhhccccccccHHHHHHHHHHHHhhcccCCCCC---------------hHHHHHHh--------hhhhHHHHHHHHH
Q 015006          188 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQD---------------DEEGKVFV--------GKRNLLHLNVAAC  244 (414)
Q Consensus       188 ~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~---------------~~e~~~~~--------~~~~~~~~N~a~~  244 (414)
                      .+......+.+.|++++|+..|.+....  .+.|+.               -++...+.        .....+++.+..+
T Consensus       292 t~n~li~~y~~~g~~~eA~~lf~~M~~~--g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~  369 (697)
T PLN03081        292 AWNSMLAGYALHGYSEEALCLYYEMRDS--GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDL  369 (697)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHH
Confidence            4555666777888888888888876541  112221               01111111        1112467778888


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCC
Q 015006          245 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV--DKSS  302 (414)
Q Consensus       245 ~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l--~P~n  302 (414)
                      |.|.|++++|...+++..+   .+...|..+..+|...|+.++|++.|++.++.  .|+.
T Consensus       370 y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~  426 (697)
T PLN03081        370 YSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNH  426 (697)
T ss_pred             HHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCH
Confidence            8889999999888887643   36778888999999999999999999998764  5653

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=91.80  E-value=1.4  Score=41.54  Aligned_cols=72  Identities=18%  Similarity=0.230  Sum_probs=65.7

Q ss_pred             HHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006          227 GKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  298 (414)
Q Consensus       227 ~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l  298 (414)
                      ...+.+....++.-++..+.-.++++.++...++.+.++|-+-++|.++=.+|+..|+...|+..|.+.-++
T Consensus       145 R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         145 RRALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            345566778899999999999999999999999999999999999999999999999999999999887663

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=91.57  E-value=0.66  Score=45.51  Aligned_cols=96  Identities=15%  Similarity=0.185  Sum_probs=76.3

Q ss_pred             HHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 015006          189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA----  264 (414)
Q Consensus       189 ~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~----  264 (414)
                      +.+.|.-|..-|++..|+++|.++-.+|..            ....+..+.|+-.+-+-+++|.....+..+|...    
T Consensus       153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs------------~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~  220 (466)
T KOG0686|consen  153 LEDLGDHYLDCGQLDNALRCYSRARDYCTS------------AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDAN  220 (466)
T ss_pred             HHHHHHHHHHhccHHHHHhhhhhhhhhhcc------------hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhh
Confidence            456777788899999999999998887643            2234668889999999999999999998888765    


Q ss_pred             C----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015006          265 N----PAHVKGLYRRGMAYMALGEFEEAQRDFEMMM  296 (414)
Q Consensus       265 d----p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al  296 (414)
                      .    .-.++...-.|.|++.+++|..|.+.|-.+.
T Consensus       221 ~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~  256 (466)
T KOG0686|consen  221 ENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE  256 (466)
T ss_pred             hhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            1    1236677778999999999999998886653

>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=91.34  E-value=0.26  Score=44.06  Aligned_cols=24  Identities=8%  Similarity=-0.101  Sum_probs=22.3

Q ss_pred             ccccCCcCcEEEEEEcCCCcCCCC
Q 015006            2 GIGTMTREEKAVIYVTSQYLTPSP   25 (414)
Q Consensus         2 ~~~~m~~Ge~~~~~i~~~~~~g~~   25 (414)
                      +|.+|+.|++..|.|+|+-|||..
T Consensus        48 aL~G~~~Gd~~~v~l~peeAyGe~   71 (196)
T PRK10737         48 ALEGHEVGDKFDVAVGANDAYGQY   71 (196)
T ss_pred             HHcCCCCCCEEEEEEChHHhcCCC
Confidence            688999999999999999999974

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.21  E-value=5.5  Score=36.78  Aligned_cols=104  Identities=13%  Similarity=0.068  Sum_probs=63.5

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +..+-..++.+-..++|++|..+..+|++..+.-...         -..+..|--.++..-.+..|.++...+++|..+-
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrsl---------fhAAKayEqaamLake~~klsEvvdl~eKAs~lY  101 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSL---------FHAAKAYEQAAMLAKELSKLSEVVDLYEKASELY  101 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccH---------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            4444445555556778888888888888644321110         1124456666666677788888888888887653


Q ss_pred             -----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006          266 -----PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  298 (414)
Q Consensus       266 -----p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l  298 (414)
                           |+.+-.-.-+|-=..+.-+.++|+..|++++.+
T Consensus       102 ~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralav  139 (308)
T KOG1585|consen  102 VECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAV  139 (308)
T ss_pred             HHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence                 333333333333344556778888888888776

>PRK10941 hypothetical protein; Provisional

Probab=90.79  E-value=1.6  Score=41.25  Aligned_cols=76  Identities=17%  Similarity=0.173  Sum_probs=63.0

Q ss_pred             HHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 015006          189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  268 (414)
Q Consensus       189 ~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~  268 (414)
                      +.+.-..+.+.++|..|+++-...+.    +.|+++.+           +--+|.+|.+++.+..|+.+++.-++..|+.
T Consensus       184 l~nLK~~~~~~~~~~~AL~~~e~ll~----l~P~dp~e-----------~RDRGll~~qL~c~~~A~~DL~~fl~~~P~d  248 (269)
T PRK10941        184 LDTLKAALMEEKQMELALRASEALLQ----FDPEDPYE-----------IRDRGLIYAQLDCEHVALSDLSYFVEQCPED  248 (269)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHH----hCCCCHHH-----------HHHHHHHHHHcCCcHHHHHHHHHHHHhCCCc
Confidence            34445678899999999999999999    78888433           3449999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 015006          269 VKGLYRRGMAY  279 (414)
Q Consensus       269 ~ka~~r~g~a~  279 (414)
                      +.+-.-+.+..
T Consensus       249 p~a~~ik~ql~  259 (269)
T PRK10941        249 PISEMIRAQIH  259 (269)
T ss_pred             hhHHHHHHHHH
Confidence            88876665544

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.75  E-value=2.2  Score=37.93  Aligned_cols=103  Identities=15%  Similarity=0.240  Sum_probs=72.0

Q ss_pred             hccccccc---cHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhh-hH-----HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015006          193 GNRLFKEG---KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKR-NL-----LHLNVAACLLKLGECRKSIEACNKVLD  263 (414)
Q Consensus       193 Gn~~fk~g---~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~-~~-----~~~N~a~~~~kl~~~~~A~~~~~~al~  263 (414)
                      |-.++...   +...|...|.+++..+..-.|......+.|..-. .+     .-+-+|..+...+++++|+...+.+|.
T Consensus        38 GW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~  117 (207)
T COG2976          38 GWRYWQSHQVEQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA  117 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc
Confidence            44455443   4558999999999876555554433333333322 22     345678888999999999999999985


Q ss_pred             hCC-CcHHH--HHHHHHHHHHcCCHHHHHHHHHHH
Q 015006          264 ANP-AHVKG--LYRRGMAYMALGEFEEAQRDFEMM  295 (414)
Q Consensus       264 ~dp-~~~ka--~~r~g~a~~~l~~~~eA~~~~~~a  295 (414)
                      .-. ++.++  -.|+|.++..++.+++|+..+...
T Consensus       118 ~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~  152 (207)
T COG2976         118 QTKDENLKALAALRLARVQLQQKKADAALKTLDTI  152 (207)
T ss_pred             cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc
Confidence            533 35554  578999999999999999887654

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=90.55  E-value=2.2  Score=43.12  Aligned_cols=52  Identities=21%  Similarity=0.161  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHHHHHH
Q 015006          269 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS-SEPDATAALSKLKKQRQEV  320 (414)
Q Consensus       269 ~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~-n~~~~~~~l~~~~~~~~~~  320 (414)
                      +-+.+|+|.|..++|+.++|++.|+..++..|. +...++.+|-.+--.++.+
T Consensus       259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Y  311 (539)
T PF04184_consen  259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAY  311 (539)
T ss_pred             hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCH
Confidence            456688999999999999999999999998886 3355776666554433333

The molecular function of this protein is uncertain.

>PLN03077 Protein ECB2; Provisional

Probab=90.55  E-value=3  Score=46.20  Aligned_cols=121  Identities=16%  Similarity=0.094  Sum_probs=66.5

Q ss_pred             HHHhhhccccccccHHHHHHHHHHHHhhcccCCCCCh---------------HH-HHHHhhhh--------hHHHHHHHH
Q 015006          188 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDD---------------EE-GKVFVGKR--------NLLHLNVAA  243 (414)
Q Consensus       188 ~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~---------------~e-~~~~~~~~--------~~~~~N~a~  243 (414)
                      .+....+.+.+.|+..+|+..|++....  .+.|+..               ++ ...+..+.        ...|..+..
T Consensus       556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~--g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~  633 (857)
T PLN03077        556 SWNILLTGYVAHGKGSMAVELFNRMVES--GVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD  633 (857)
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence            3555666788899999999999987651  1333320               01 01111111        124555666


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 015006          244 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  313 (414)
Q Consensus       244 ~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~  313 (414)
                      ++.+.|++++|...+++. .+.| ++..|-.+-.++...++.+.|....+++++++|++ ......|..+
T Consensus       634 ~l~r~G~~~eA~~~~~~m-~~~p-d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~-~~~y~ll~n~  700 (857)
T PLN03077        634 LLGRAGKLTEAYNFINKM-PITP-DPAVWGALLNACRIHRHVELGELAAQHIFELDPNS-VGYYILLCNL  700 (857)
T ss_pred             HHHhCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-cchHHHHHHH
Confidence            666666666666665543 2333 23444444445555666666666666667777765 3344444444

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=90.15  E-value=7.2  Score=37.71  Aligned_cols=121  Identities=17%  Similarity=0.133  Sum_probs=85.8

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      .+..+...+..+.+.|.|..|.....++..........           ...+..-.|......|+..+|+......+..
T Consensus       145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~-----------~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~  213 (352)
T PF02259_consen  145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL-----------LPRVFLEYAKLLWAQGEQEEAIQKLRELLKC  213 (352)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC-----------CcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            46667788888889999999999998888732111111           1335555677777788888888877766651


Q ss_pred             --C--------------------------------CCcHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhCCCCHH
Q 015006          265 --N--------------------------------PAHVKGLYRRGMAYMAL------GEFEEAQRDFEMMMKVDKSSEP  304 (414)
Q Consensus       265 --d--------------------------------p~~~ka~~r~g~a~~~l------~~~~eA~~~~~~al~l~P~n~~  304 (414)
                        .                                ...+++++.+|.-...+      +.+++++..|..|++++|+. .
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~  292 (352)
T PF02259_consen  214 RLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSW-E  292 (352)
T ss_pred             HhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhH-H
Confidence              0                                11267888888888888      88999999999999999987 3


Q ss_pred             HHHHHHHHHHHHH
Q 015006          305 DATAALSKLKKQR  317 (414)
Q Consensus       305 ~~~~~l~~~~~~~  317 (414)
                      .+...+......+
T Consensus       293 k~~~~~a~~~~~~  305 (352)
T PF02259_consen  293 KAWHSWALFNDKL  305 (352)
T ss_pred             HHHHHHHHHHHHH
Confidence            4555555544433

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=90.11  E-value=6.1  Score=36.23  Aligned_cols=118  Identities=14%  Similarity=0.117  Sum_probs=68.6

Q ss_pred             cccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCH-HHHH-HHHHHHHH-hC-CCcHHHH
Q 015006          197 FKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC-RKSI-EACNKVLD-AN-PAHVKGL  272 (414)
Q Consensus       197 fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~-~~A~-~~~~~al~-~d-p~~~ka~  272 (414)
                      |-.|+|..|+....-||..=. ..|..-  ...+-.+.+.-..+-|...++.|.- +-.. ..+..+.. .+ |+-+.|-
T Consensus        94 ~D~Gd~~~AL~ia~yAI~~~l-~~Pd~f--~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAK  170 (230)
T PHA02537         94 FDIGDFDGALEIAEYALEHGL-TMPDQF--RRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAK  170 (230)
T ss_pred             eeccCHHHHHHHHHHHHHcCC-CCCccc--cCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHH
Confidence            556899999999999988321 223220  0011122233445566666666652 2221 12222211 11 4545554


Q ss_pred             HH--HHHHHH---------HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 015006          273 YR--RGMAYM---------ALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQE  319 (414)
Q Consensus       273 ~r--~g~a~~---------~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~  319 (414)
                      +.  .|.++.         ..++...|+..|++|+.++|.  .-++..++++.++++.
T Consensus       171 l~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k--~GVK~~i~~l~~~lr~  226 (230)
T PHA02537        171 LYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK--CGVKKDIERLERRLKA  226 (230)
T ss_pred             HHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC--CChHHHHHHHHHHHhh
Confidence            44  455552         346788999999999999987  4688888888877763

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=90.07  E-value=1.1  Score=28.26  Aligned_cols=33  Identities=21%  Similarity=0.416  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHH--HHHHHhhCCCC
Q 015006          270 KGLYRRGMAYMALGEFEEAQRD--FEMMMKVDKSS  302 (414)
Q Consensus       270 ka~~r~g~a~~~l~~~~eA~~~--~~~al~l~P~n  302 (414)
                      +.++-.|-.+...|++++|+..  |.-+..++|.|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            4566667777777777777777  33666666653

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=89.86  E-value=5.4  Score=45.22  Aligned_cols=66  Identities=15%  Similarity=0.011  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015006          236 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  301 (414)
Q Consensus       236 ~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~  301 (414)
                      .+|.-|+-.|.+-..+++|.+.++.-++--.+..+.|.+.|..++..++-++|...+.+||+--|.
T Consensus      1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred             HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence            467778888888999999999999888877778899999999999999999999999999999887

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=89.85  E-value=0.73  Score=38.35  Aligned_cols=40  Identities=20%  Similarity=0.250  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 015006          236 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRR  275 (414)
Q Consensus       236 ~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~  275 (414)
                      .+.+-+|..|+++++|..++.+++..|+.+|+|..|.--+
T Consensus        72 e~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk  111 (149)
T KOG3364|consen   72 ECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK  111 (149)
T ss_pred             hhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            4566699999999999999999999999999998875433

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=89.82  E-value=0.66  Score=42.19  Aligned_cols=59  Identities=24%  Similarity=0.319  Sum_probs=51.7

Q ss_pred             cccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 015006          195 RLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  268 (414)
Q Consensus       195 ~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~  268 (414)
                      .+++.+++..|.+.|.+|+.    +.|..           ..-++.++...-|.|+++.|...+.++|++||..
T Consensus         4 ~~~~~~D~~aaaely~qal~----lap~w-----------~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           4 MLAESGDAEAAAELYNQALE----LAPEW-----------AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             hhcccCChHHHHHHHHHHhh----cCchh-----------hhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            45688999999999999999    55554           5678889999999999999999999999999865

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.61  E-value=10  Score=35.55  Aligned_cols=79  Identities=14%  Similarity=0.196  Sum_probs=58.9

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 015006          235 NLLHLNVAACLLKLGECRKSIEACNKVLD----AN--PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATA  308 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~----~d--p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~  308 (414)
                      ..+..-++...++.|+-+.|..+++.+-+    ++  ..+.-.+.+.+..|...++|-+|...|.+++..||.+ +.+..
T Consensus       212 p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~-~~a~N  290 (366)
T KOG2796|consen  212 PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRN-AVANN  290 (366)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCc-hhhhc
Confidence            45677788888999999999988885532    22  2345667777788888889999999999999999987 44544


Q ss_pred             HHHHHH
Q 015006          309 ALSKLK  314 (414)
Q Consensus       309 ~l~~~~  314 (414)
                      ..+.|.
T Consensus       291 nKALcl  296 (366)
T KOG2796|consen  291 NKALCL  296 (366)
T ss_pred             hHHHHH
Confidence            444443

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=89.45  E-value=0.54  Score=27.08  Aligned_cols=24  Identities=25%  Similarity=0.307  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH
Q 015006          270 KGLYRRGMAYMALGEFEEAQRDFE  293 (414)
Q Consensus       270 ka~~r~g~a~~~l~~~~eA~~~~~  293 (414)
                      .+++.+|.++..+|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            355666677777777777666553

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=88.94  E-value=1.8  Score=43.15  Aligned_cols=100  Identities=14%  Similarity=0.153  Sum_probs=56.3

Q ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCC-HHHHHHHH
Q 015006          234 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK-GLYRRGMAYMA-LGEFEEAQRDFEMMMKVDKSS-EPDATAAL  310 (414)
Q Consensus       234 ~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~k-a~~r~g~a~~~-l~~~~eA~~~~~~al~l~P~n-~~~~~~~l  310 (414)
                      .+++++..|-||+.+++|.+|+..+..+|-.-. ..| .+..+..-+-. ....++....+--++.+.|.. +..+...+
T Consensus       163 ~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~-r~k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~l  241 (404)
T PF10255_consen  163 HISTYYYVGFAYLMLRRYADAIRTFSQILLYIQ-RTKNQYHQRSYQYDQINKKNEQMYALLAICLSLCPQRLDESISSQL  241 (404)
T ss_pred             heehHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhccccchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence            467889999999999999999999998875321 111 22222222222 234566666677777778852 12222222


Q ss_pred             H-HHHHHHHHHHHHHHHHHHhhccC
Q 015006          311 S-KLKKQRQEVESKARKQFKGLFDK  334 (414)
Q Consensus       311 ~-~~~~~~~~~~~~~~~~~~~~~~~  334 (414)
                      . +...++..-.+-....|..+|..
T Consensus       242 keky~ek~~kmq~gd~~~f~elF~~  266 (404)
T PF10255_consen  242 KEKYGEKMEKMQRGDEEAFEELFSF  266 (404)
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHh
Confidence            2 22222222222244566777754

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=88.77  E-value=7.3  Score=39.95  Aligned_cols=67  Identities=18%  Similarity=0.206  Sum_probs=56.7

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015006          235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPA----HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  301 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~----~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~  301 (414)
                      .-.++..|..+...|+.++|+..+++++.....    ..-++|.+|-+++.+++|++|...|.+.++.+.-
T Consensus       267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W  337 (468)
T PF10300_consen  267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW  337 (468)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc
Confidence            446788999999999999999999999854432    3457899999999999999999999999987654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=88.37  E-value=5.1  Score=44.39  Aligned_cols=107  Identities=14%  Similarity=0.249  Sum_probs=72.3

Q ss_pred             hccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHc-------CCHHHHHHHHHHHHHhC
Q 015006          193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL-------GECRKSIEACNKVLDAN  265 (414)
Q Consensus       193 Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl-------~~~~~A~~~~~~al~~d  265 (414)
                      ...+...+.|..|+..|++...    ..|.-.|-.        .+.+..|.+.+..       ..+.+|+.-+++. .--
T Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  548 (932)
T PRK13184        482 PDAFLAEKLYDQALIFYRRIRE----SFPGRKEGY--------EAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGG  548 (932)
T ss_pred             cHHHHhhHHHHHHHHHHHHHhh----cCCCcccch--------HHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCC
Confidence            3455677788888888888777    344432221        2333444444322       2477777777663 344


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 015006          266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  313 (414)
Q Consensus       266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~  313 (414)
                      |.-+--|.-+|.+|..+|+|++-+++|.-|++--|.+ +.+-.....+
T Consensus       549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  595 (932)
T PRK13184        549 VGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQH-PEISRLRDHL  595 (932)
T ss_pred             CCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCC-CccHHHHHHH
Confidence            6667788899999999999999999999999999988 4444333333

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=88.35  E-value=3.5  Score=37.49  Aligned_cols=85  Identities=15%  Similarity=0.100  Sum_probs=55.5

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      .|--++..|+......-+..|+..|.+|+..-..  |....       -...+.+-+|..+.++|++++|+..+.+++..
T Consensus       124 lAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~--~~~~~-------~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~  194 (214)
T PF09986_consen  124 LAWLYRDLGDEENEKRFLRKALEFYEEAYENEDF--PIEGM-------DEATLLYLIGELNRRLGNYDEAKRWFSRVIGS  194 (214)
T ss_pred             HHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcC--CCCCc-------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence            4555666666555555677788888888773221  11110       11346677999999999999999999999876


Q ss_pred             CCCcH-HHHHHHHHH
Q 015006          265 NPAHV-KGLYRRGMA  278 (414)
Q Consensus       265 dp~~~-ka~~r~g~a  278 (414)
                      ...+. ..+..+|+-
T Consensus       195 ~~~s~~~~l~~~AR~  209 (214)
T PF09986_consen  195 KKASKEPKLKDMARD  209 (214)
T ss_pred             CCCCCcHHHHHHHHH
Confidence            54332 355565553

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=88.12  E-value=2.1  Score=28.31  Aligned_cols=25  Identities=24%  Similarity=0.469  Sum_probs=21.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHh
Q 015006          273 YRRGMAYMALGEFEEAQRDFEMMMK  297 (414)
Q Consensus       273 ~r~g~a~~~l~~~~eA~~~~~~al~  297 (414)
                      +.+|.+|..+|+++.|+..++.++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            6788888889999999888888884

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=87.89  E-value=4.4  Score=40.01  Aligned_cols=102  Identities=12%  Similarity=0.130  Sum_probs=74.3

Q ss_pred             cccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------h-----
Q 015006          199 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD---------A-----  264 (414)
Q Consensus       199 ~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~---------~-----  264 (414)
                      ...|.++...|..++...   +|..--.--.....-+..++-+|.++..+|++..|...+++||-         .     
T Consensus         7 s~~Y~~~q~~F~~~v~~~---Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~   83 (360)
T PF04910_consen    7 SKAYQEAQEQFYAAVQSH---DPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRS   83 (360)
T ss_pred             CHHHHHHHHHHHHHHHcc---CHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            346778888888877621   11110000111223466788899999999999999999998871         1     


Q ss_pred             C------------CCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 015006          265 N------------PAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  303 (414)
Q Consensus       265 d------------p~~---~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~  303 (414)
                      +            +.|   -.|+||..+++.+.|-+.-|++.++-.+.+||.++
T Consensus        84 ~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~D  137 (360)
T PF04910_consen   84 NLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDED  137 (360)
T ss_pred             ccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC
Confidence            1            122   68899999999999999999999999999999843

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.84  E-value=9.1  Score=39.51  Aligned_cols=110  Identities=20%  Similarity=0.348  Sum_probs=60.6

Q ss_pred             chHHHHHHhhhcCCCCeEEEEecCCCccccCCCCCCCCCCcceEEEEEEcccCCCCCCCCCchhhhhHHHHHHHhhhccc
Q 015006          117 VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRL  196 (414)
Q Consensus       117 v~~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~~ip~~~~l~~eieL~~~~~~~~~~~~~~~e~~~~a~~~k~~Gn~~  196 (414)
                      .-..+..++..|-++....+.++.-|                                   -.+..+..|...+..|..-
T Consensus       257 aq~~F~~av~~~d~n~v~~lL~ssPY-----------------------------------HvdsLLqva~~~r~qgD~e  301 (665)
T KOG2422|consen  257 AQRDFYLAVIVHDPNNVLILLISSPY-----------------------------------HVDSLLQVADIFRFQGDRE  301 (665)
T ss_pred             HHHHHHHHHhhcCCcceeeeeccCCc-----------------------------------chhHHHHHHHHHHHhcchh
Confidence            55567777777777777666664322                                   1223455566666655555


Q ss_pred             cccccHHHHHHHHHHHHhhcccCCCCC--------hHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 015006          197 FKEGKFELAKAKYEKVLRDFNHVNPQD--------DEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  267 (414)
Q Consensus       197 fk~g~y~~A~~~Y~~al~~~~~~~p~~--------~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~  267 (414)
                      ...+-.++|+-.+.+|+.-.  ..|..        -.+...+.    .+++.--...-+.|.|.-|.++|+-.|.++|.
T Consensus       302 ~aadLieR~Ly~~d~a~hp~--F~~~sg~cRL~y~~~eNR~Fy----L~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~  374 (665)
T KOG2422|consen  302 MAADLIERGLYVFDRALHPN--FIPFSGNCRLPYIYPENRQFY----LALFRYMQSLAQRGCWRTALEWCKLLLSLDPS  374 (665)
T ss_pred             hHHHHHHHHHHHHHHHhccc--cccccccccCcccchhhHHHH----HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCc
Confidence            55555555555555555311  11111        11112211    11122223334789999999999999999987

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=87.83  E-value=9.8  Score=32.78  Aligned_cols=82  Identities=16%  Similarity=0.088  Sum_probs=65.5

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                      ...+..+..+-++.++..++...+...--+.|.++..-.--|..++..|+|.+|+..|+.+..-.|.. +-++..+..|.
T Consensus        10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~-p~~kALlA~CL   88 (160)
T PF09613_consen   10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGF-PYAKALLALCL   88 (160)
T ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC-hHHHHHHHHHH
Confidence            44566677777888888888888877777889999888889999999999999999999887777775 67777777776


Q ss_pred             HHH
Q 015006          315 KQR  317 (414)
Q Consensus       315 ~~~  317 (414)
                      ..+
T Consensus        89 ~~~   91 (160)
T PF09613_consen   89 YAL   91 (160)
T ss_pred             HHc
Confidence            544

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=87.82  E-value=1.2  Score=33.40  Aligned_cols=34  Identities=21%  Similarity=0.264  Sum_probs=29.5

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhccc
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  218 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~  218 (414)
                      .|..+..+|+.+=+.|+|.+|+.+|.+||.+|..
T Consensus         5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~   38 (77)
T cd02683           5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQ   38 (77)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            5677778888899999999999999999997754

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

Probab=87.65  E-value=0.69  Score=40.26  Aligned_cols=25  Identities=4%  Similarity=-0.170  Sum_probs=22.7

Q ss_pred             ccccCCcCcEEEEEEcCCCcCCCCC
Q 015006            2 GIGTMTREEKAVIYVTSQYLTPSPL   26 (414)
Q Consensus         2 ~~~~m~~Ge~~~~~i~~~~~~g~~~   26 (414)
                      ||.+|.+||+..|.|||+-|||..-
T Consensus        49 al~g~~~Ge~~~V~IpPE~AfGe~~   73 (174)
T COG1047          49 ALLGKEVGEEFTVEIPPEDAFGEYD   73 (174)
T ss_pred             HHhCCCCCceeEEEeCchHhcCCCC
Confidence            6789999999999999999999843

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=87.30  E-value=2.1  Score=31.87  Aligned_cols=35  Identities=26%  Similarity=0.333  Sum_probs=30.5

Q ss_pred             HHHHHHHhhhccccccccHHHHHHHHHHHHhhccc
Q 015006          184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  218 (414)
Q Consensus       184 ~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~  218 (414)
                      +.|..+-.++..+=+.|+|.+|+.+|++|+..|..
T Consensus         4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q   38 (75)
T cd02682           4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQ   38 (75)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            45778888899999999999999999999987654

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.03  E-value=3.8  Score=44.17  Aligned_cols=120  Identities=17%  Similarity=0.190  Sum_probs=77.9

Q ss_pred             hHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHH-----Hc--CCHHHHH
Q 015006          183 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLL-----KL--GECRKSI  255 (414)
Q Consensus       183 ~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~-----kl--~~~~~A~  255 (414)
                      +.......+.|-.++..|+|.+|+++|..+|-.+.-+.-++.++..+.+++...+..-+....+     ++  .....++
T Consensus       988 l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ 1067 (1202)
T KOG0292|consen  988 LSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQL 1067 (1202)
T ss_pred             HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHH
Confidence            5556677788999999999999999999998765544445555555555554444222211111     12  2334442


Q ss_pred             HH--HHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          256 EA--CNKVLDANPAH-VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       256 ~~--~~~al~~dp~~-~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      +.  |=.-+.+.|-+ .-|+.-.-.+++++++|..|.....+.|++-|..
T Consensus      1068 ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~ 1117 (1202)
T KOG0292|consen 1068 ELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSP 1117 (1202)
T ss_pred             HHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC
Confidence            21  11223555644 4555555678899999999999999999999975

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.76  E-value=2.3  Score=31.81  Aligned_cols=35  Identities=14%  Similarity=0.111  Sum_probs=30.1

Q ss_pred             HHHHHHHhhhccccccccHHHHHHHHHHHHhhccc
Q 015006          184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  218 (414)
Q Consensus       184 ~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~  218 (414)
                      ..|..+-.++..+=+.|+|.+|+.+|..|+.+|..
T Consensus         4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~   38 (76)
T cd02681           4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY   38 (76)
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            45777888888999999999999999999997643

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.63  E-value=9.5  Score=38.61  Aligned_cols=98  Identities=20%  Similarity=0.280  Sum_probs=71.3

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD-A  264 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~-~  264 (414)
                      +....-.|-....-+.|+.|...|..|++....            .++.+-+..|+|..|+..++-+.    +.++++ +
T Consensus       367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~------------~dl~a~~nlnlAi~YL~~~~~ed----~y~~ld~i  430 (629)
T KOG2300|consen  367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTES------------IDLQAFCNLNLAISYLRIGDAED----LYKALDLI  430 (629)
T ss_pred             HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH------------HHHHHHHHHhHHHHHHHhccHHH----HHHHHHhc
Confidence            334445566666667788888888888883221            33567788999999999776443    333433 4


Q ss_pred             CCCc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015006          265 NPAH----------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  299 (414)
Q Consensus       265 dp~~----------~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~  299 (414)
                      .|.|          ..++|-.|.-.+..+++.||...+.+.|++.
T Consensus       431 ~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  431 GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence            4543          5678888999999999999999999999885

>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.62  E-value=1.7  Score=32.43  Aligned_cols=36  Identities=19%  Similarity=0.194  Sum_probs=31.0

Q ss_pred             hHHHHHHHhhhccccccccHHHHHHHHHHHHhhccc
Q 015006          183 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  218 (414)
Q Consensus       183 ~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~  218 (414)
                      +..|..+..+|...=..|+|.+|+.+|..||.+|..
T Consensus         3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~   38 (75)
T cd02684           3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVP   38 (75)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            456778888888899999999999999999997753

This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=86.59  E-value=7.6  Score=38.26  Aligned_cols=74  Identities=18%  Similarity=0.190  Sum_probs=59.4

Q ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 015006          234 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAAL  310 (414)
Q Consensus       234 ~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l  310 (414)
                      +..++.-.|...+. -+...|..++..++++.|+.+-+-.--+.+++..|+..++-..++.+-+.+|.  +++....
T Consensus       229 rAvLLtAkA~s~ld-adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH--P~ia~lY  302 (531)
T COG3898         229 RAVLLTAKAMSLLD-ADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH--PDIALLY  302 (531)
T ss_pred             HHHHHHHHHHHHhc-CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC--hHHHHHH
Confidence            34455444444433 35889999999999999999999999999999999999999999999999987  3444333

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=86.42  E-value=11  Score=39.13  Aligned_cols=103  Identities=22%  Similarity=0.079  Sum_probs=74.4

Q ss_pred             cccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhCCCcHHHHH
Q 015006          195 RLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRK-SIEACNKVLDANPAHVKGLY  273 (414)
Q Consensus       195 ~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~-A~~~~~~al~~dp~~~ka~~  273 (414)
                      .+...+....|+.....++.    .+|.+           ..++.|++.+....+..-. +...+..+....|.|...+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~l~----~~~~~-----------~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~  140 (620)
T COG3914          76 LLAPLADSTLAFLAKRIPLS----VNPEN-----------CPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLG  140 (620)
T ss_pred             hccccccchhHHHHHhhhHh----cCccc-----------chHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHh
Confidence            33444555555555555555    45554           7799999998887776555 55566668999999988777


Q ss_pred             HH------HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 015006          274 RR------GMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  313 (414)
Q Consensus       274 r~------g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~  313 (414)
                      -+      |+.+..+++..+|..++.++..+.|.+ ..+...+...
T Consensus       141 ~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~-~~~~~~~~~~  185 (620)
T COG3914         141 HLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKY-PRVLGALMTA  185 (620)
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhh-hhhHhHHHHH
Confidence            77      888999999999999999999999998 4444343333

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=85.79  E-value=8.6  Score=29.69  Aligned_cols=48  Identities=21%  Similarity=0.290  Sum_probs=37.4

Q ss_pred             HHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 015006          206 KAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  268 (414)
Q Consensus       206 ~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~  268 (414)
                      +....+++.    .+|.+           ..+.+.+|.+++..|+|+.|+..+-.++..++.+
T Consensus         8 ~~al~~~~a----~~P~D-----------~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen    8 IAALEAALA----ANPDD-----------LDARYALADALLAAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHHHH----HSTT------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred             HHHHHHHHH----cCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            445566666    57777           5688889999999999999999999999999876

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=85.68  E-value=2.4  Score=40.41  Aligned_cols=78  Identities=13%  Similarity=0.146  Sum_probs=63.1

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 015006          235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYR-RGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  313 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r-~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~  313 (414)
                      ..++.-.++-..+.+.|.+.-..|.++|...|.|+.-|.. -+.-+...++++.|+..|.++|+++|++ +.++.+.-++
T Consensus       107 ~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~-p~iw~eyfr~  185 (435)
T COG5191         107 PKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS-PRIWIEYFRM  185 (435)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC-chHHHHHHHH
Confidence            3456656666677889999999999999999999988765 4556777899999999999999999998 5666555544

>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.24  E-value=2.2  Score=31.76  Aligned_cols=36  Identities=17%  Similarity=0.156  Sum_probs=30.2

Q ss_pred             hHHHHHHHhhhccccccccHHHHHHHHHHHHhhccc
Q 015006          183 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  218 (414)
Q Consensus       183 ~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~  218 (414)
                      +..|..+..+|...=+.|+|.+|..+|..+|..|..
T Consensus         3 l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~   38 (75)
T cd02677           3 LEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLK   38 (75)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            346777777888888889999999999999998754

This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.

>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.21  E-value=2.5  Score=31.32  Aligned_cols=36  Identities=17%  Similarity=0.274  Sum_probs=29.7

Q ss_pred             hHHHHHHHhhhccccccccHHHHHHHHHHHHhhccc
Q 015006          183 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  218 (414)
Q Consensus       183 ~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~  218 (414)
                      +..|..+...|...=+.|+|.+|+.+|..|+..|..
T Consensus         3 ~~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~   38 (75)
T cd02656           3 LQQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQ   38 (75)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            446777777888888889999999999999987654

The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=85.03  E-value=1.9  Score=27.48  Aligned_cols=29  Identities=17%  Similarity=0.161  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          237 LHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       237 ~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +|..+|-+-+-.++|.+|+.++.++|++.
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            67789999999999999999999999874

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=85.00  E-value=8.5  Score=40.36  Aligned_cols=91  Identities=15%  Similarity=0.152  Sum_probs=70.7

Q ss_pred             hhhccccccc-----cHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcC---CHHHHHHHHHHHH
Q 015006          191 VTGNRLFKEG-----KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG---ECRKSIEACNKVL  262 (414)
Q Consensus       191 ~~Gn~~fk~g-----~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~---~~~~A~~~~~~al  262 (414)
                      ..|..+++..     ++..|...|.+|..    ...             ..+.+++|.||..-.   ++..|..++..|.
T Consensus       293 ~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~----~g~-------------~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa  355 (552)
T KOG1550|consen  293 GLGRLYLQGLGVEKIDYEKALKLYTKAAE----LGN-------------PDAQYLLGVLYETGTKERDYRRAFEYYSLAA  355 (552)
T ss_pred             HHHHHHhcCCCCccccHHHHHHHHHHHHh----cCC-------------chHHHHHHHHHHcCCccccHHHHHHHHHHHH
Confidence            3555555532     77888888888887    333             337778999988766   6789999999886


Q ss_pred             HhCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhCC
Q 015006          263 DANPAHVKGLYRRGMAYMAL----GEFEEAQRDFEMMMKVDK  300 (414)
Q Consensus       263 ~~dp~~~ka~~r~g~a~~~l----~~~~eA~~~~~~al~l~P  300 (414)
                      ..  .++.|+|++|.+|..=    .+...|..+|++|.+..+
T Consensus       356 ~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~  395 (552)
T KOG1550|consen  356 KA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN  395 (552)
T ss_pred             Hc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC
Confidence            55  6899999999998763    578999999999999873

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=84.09  E-value=10  Score=37.38  Aligned_cols=78  Identities=19%  Similarity=0.264  Sum_probs=50.2

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccC----------CCCC--------hHHHHHHhhhhhHHHHHHHHHHHH
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV----------NPQD--------DEEGKVFVGKRNLLHLNVAACLLK  247 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~----------~p~~--------~~e~~~~~~~~~~~~~N~a~~~~k  247 (414)
                      +..+.+.+..+..+|++..|....++||-.+...          ....        ..++.    -...+.........+
T Consensus        40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR----~fflal~r~i~~L~~  115 (360)
T PF04910_consen   40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENR----QFFLALFRYIQSLGR  115 (360)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccch----HHHHHHHHHHHHHHh
Confidence            4455666666667777777777777777554311          1100        01111    112345556677788


Q ss_pred             cCCHHHHHHHHHHHHHhCCC
Q 015006          248 LGECRKSIEACNKVLDANPA  267 (414)
Q Consensus       248 l~~~~~A~~~~~~al~~dp~  267 (414)
                      .|.|.-|++.|+-.+.+||.
T Consensus       116 RG~~rTAlE~~KlLlsLdp~  135 (360)
T PF04910_consen  116 RGCWRTALEWCKLLLSLDPD  135 (360)
T ss_pred             cCcHHHHHHHHHHHHhcCCC
Confidence            99999999999999999987

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=83.66  E-value=2.5  Score=31.45  Aligned_cols=36  Identities=22%  Similarity=0.280  Sum_probs=31.4

Q ss_pred             hHHHHHHHhhhccccccccHHHHHHHHHHHHhhccc
Q 015006          183 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  218 (414)
Q Consensus       183 ~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~  218 (414)
                      +..|..+..+|...=..|+|.+|+.+|.+|+..|..
T Consensus         3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~   38 (75)
T cd02678           3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMH   38 (75)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            457888888999999999999999999999997643

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=83.10  E-value=2.9  Score=38.87  Aligned_cols=59  Identities=19%  Similarity=0.213  Sum_probs=30.2

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 015006          235 NLLHLNVAACLLKLGECRKSIEACNKVLDANP------AHVKGLYRRGMAYMALGEFEEAQRDFE  293 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp------~~~ka~~r~g~a~~~l~~~~eA~~~~~  293 (414)
                      ..+...+|.-|+++|+|++|+..+..++..-.      -....+.++..|...+|+.+..+...-
T Consensus       178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~l  242 (247)
T PF11817_consen  178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSL  242 (247)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            44445555555666666666655555554321      113444555555555555555554433

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=82.85  E-value=5.9  Score=37.01  Aligned_cols=62  Identities=16%  Similarity=0.095  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 015006          254 SIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  316 (414)
Q Consensus       254 A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~  316 (414)
                      |+.+|.+|+.+.|.+-..|..+|..+...++.-.|+-.|-+++-..-.. +.++.+|..+-.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf-~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPF-PSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB---HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHH
Confidence            6789999999999999999999999999999999999999999775554 5677777776554

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=82.16  E-value=16  Score=38.76  Aligned_cols=127  Identities=19%  Similarity=0.186  Sum_probs=90.1

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCC---CCCh--------HHHHHHhhhhhHHHHHHHHHHHHcCCHHHH
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVN---PQDD--------EEGKVFVGKRNLLHLNVAACLLKLGECRKS  254 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~---p~~~--------~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A  254 (414)
                      +-.+.--|-.....+....|.+.+.++++.+....   +...        +.......+...++...+.|.+-+++|..|
T Consensus       301 ~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a  380 (608)
T PF10345_consen  301 ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKA  380 (608)
T ss_pred             HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence            44455557777777877799999999998776544   1111        112334456667888899999999999999


Q ss_pred             HHHHHHHHHhC---C------CcHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHhhCCCCHHHHHHHHHH
Q 015006          255 IEACNKVLDAN---P------AHVKGLYRRGMAYMALGEFEEAQRDFE--------MMMKVDKSSEPDATAALSK  312 (414)
Q Consensus       255 ~~~~~~al~~d---p------~~~ka~~r~g~a~~~l~~~~eA~~~~~--------~al~l~P~n~~~~~~~l~~  312 (414)
                      ......+....   |      -.+..+|-.|..+...|+++.|+..|.        .+....+.++-.+-..|..
T Consensus       381 ~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl  455 (608)
T PF10345_consen  381 TQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNL  455 (608)
T ss_pred             HHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHH
Confidence            98888776543   2      247889999999999999999999998        5555566553333333333

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=82.09  E-value=4.5  Score=34.16  Aligned_cols=49  Identities=20%  Similarity=0.173  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 015006          237 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF  285 (414)
Q Consensus       237 ~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~  285 (414)
                      ....+|...+..|+|.-|+..++.++..+|+|..|..-++.++..++.-
T Consensus        72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~  120 (141)
T PF14863_consen   72 KVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ  120 (141)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence            4455677777778888888888888888888777777777777776543

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=81.52  E-value=2.3  Score=24.35  Aligned_cols=23  Identities=22%  Similarity=0.244  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHH
Q 015006          237 LHLNVAACLLKLGECRKSIEACN  259 (414)
Q Consensus       237 ~~~N~a~~~~kl~~~~~A~~~~~  259 (414)
                      +++++|.++..+|++++|...+.
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            67899999999999999998764

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.40  E-value=4.6  Score=30.11  Aligned_cols=35  Identities=14%  Similarity=0.045  Sum_probs=30.2

Q ss_pred             HHHHHHHhhhccccccccHHHHHHHHHHHHhhccc
Q 015006          184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  218 (414)
Q Consensus       184 ~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~  218 (414)
                      +.|..+..+|...=..|+|++|+.+|..||++|..
T Consensus         4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~   38 (75)
T cd02680           4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN   38 (75)
T ss_pred             HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence            46777778888888999999999999999998765

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=80.96  E-value=38  Score=29.69  Aligned_cols=65  Identities=11%  Similarity=0.164  Sum_probs=55.9

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015006          235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPA---HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  299 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~---~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~  299 (414)
                      ..++..+|.-|.+.|++..|++.|.++......   -...+++.-++.+..+++..+...+.+|-.+-
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~  103 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI  103 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            457889999999999999999999998876532   36677888899999999999999999988763

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=80.82  E-value=2.6  Score=42.02  Aligned_cols=59  Identities=20%  Similarity=0.445  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015006          238 HLNVAACLLKLGECRKSIEACNKVLDA---------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK  297 (414)
Q Consensus       238 ~~N~a~~~~kl~~~~~A~~~~~~al~~---------dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~  297 (414)
                      ..-+..+|.-+|+|..|++..+-+ ++         -+.++..+|..|-||+.+++|.+|++.|...|-
T Consensus       125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344566778899999999887543 22         245688899999999999999999999998874

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=80.53  E-value=3.2  Score=27.45  Aligned_cols=26  Identities=19%  Similarity=0.447  Sum_probs=24.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          239 LNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       239 ~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      +++|.+|+.+|+++.|....+.++.-
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~~   28 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIEE   28 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence            67999999999999999999999953

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>smart00745 MIT Microtubule Interacting and Trafficking molecule domain

Probab=80.30  E-value=7.2  Score=28.89  Aligned_cols=36  Identities=17%  Similarity=0.259  Sum_probs=30.2

Q ss_pred             hHHHHHHHhhhccccccccHHHHHHHHHHHHhhccc
Q 015006          183 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  218 (414)
Q Consensus       183 ~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~  218 (414)
                      +..|..+...|..+=+.|+|.+|+.+|..|+..|..
T Consensus         5 ~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~   40 (77)
T smart00745        5 LSKAKELISKALKADEAGDYEEALELYKKAIEYLLE   40 (77)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            456777788888888899999999999999987654

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=80.22  E-value=9.6  Score=41.26  Aligned_cols=96  Identities=19%  Similarity=0.197  Sum_probs=71.5

Q ss_pred             hhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 015006          192 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG  271 (414)
Q Consensus       192 ~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka  271 (414)
                      .|-.+++.|++.+|.. .-+++..   ..+.+           -..+.-+-.||..++++++|...+++++..+|+ -+-
T Consensus        49 kaLsl~r~gk~~ea~~-~Le~~~~---~~~~D-----------~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eel  112 (932)
T KOG2053|consen   49 KALSLFRLGKGDEALK-LLEALYG---LKGTD-----------DLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EEL  112 (932)
T ss_pred             HHHHHHHhcCchhHHH-HHhhhcc---CCCCc-----------hHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHH
Confidence            3456778888888883 3334431   33333           123444778999999999999999999999998 899


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 015006          272 LYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  303 (414)
Q Consensus       272 ~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~  303 (414)
                      ++.+-.||.+-+.|.+=.+.--+..+..|++.
T Consensus       113 l~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~  144 (932)
T KOG2053|consen  113 LYHLFMAYVREKSYKKQQKAALQLYKNFPKRA  144 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            99999999999999876666666666777763

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=80.21  E-value=26  Score=33.96  Aligned_cols=120  Identities=15%  Similarity=0.141  Sum_probs=84.9

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHH--HHHHHHHHHH
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRK--SIEACNKVLD  263 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~--A~~~~~~al~  263 (414)
                      |.-=.+-|..+....+|..|..+|-.|.+-+..+...-    +.     ...+--+-.|-+.++..++  ++-....+++
T Consensus       209 a~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v----~A-----~~sLKYMlLcKIMln~~ddv~~lls~K~~l~  279 (411)
T KOG1463|consen  209 ATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDV----KA-----LTSLKYMLLCKIMLNLPDDVAALLSAKLALK  279 (411)
T ss_pred             HHHHHhccceeecccccchHHHHHHHHHccccccCCcH----HH-----HHHHHHHHHHHHHhcCHHHHHHHHhhHHHHh
Confidence            44445678888888999999999999998665443221    11     1222224566677777766  5556677889


Q ss_pred             hCCCcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 015006          264 ANPAHVKGLYRRGMAYMA--LGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  318 (414)
Q Consensus       264 ~dp~~~ka~~r~g~a~~~--l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~  318 (414)
                      ++.....|+...|.|+.+  +.+|+.|+..|..=|..||    -++.++..+...+-
T Consensus       280 y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~----ivr~Hl~~Lyd~lL  332 (411)
T KOG1463|consen  280 YAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP----IVRSHLQSLYDNLL  332 (411)
T ss_pred             ccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh----HHHHHHHHHHHHHH
Confidence            888899999999999976  5689999999998887765    46666666554433

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=80.05  E-value=2  Score=31.23  Aligned_cols=35  Identities=17%  Similarity=0.236  Sum_probs=29.3

Q ss_pred             hHHHHHHHhhhccccccccHHHHHHHHHHHHhhcc
Q 015006          183 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFN  217 (414)
Q Consensus       183 ~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~  217 (414)
                      +..|..+...|..+=+.|+|.+|+.+|.+|+..+.
T Consensus         2 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~   36 (69)
T PF04212_consen    2 LDKAIELIKKAVEADEAGNYEEALELYKEAIEYLM   36 (69)
T ss_dssp             HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            34577777888888889999999999999998664

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	414
1qz2_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Compl		7e-26
1p5q_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Lengt		4e-24
2if4_A	338	Crystal Structure Of A Multi-Domain Immunophilin Fr		9e-22
1kt1_A	457	Structure Of The Large Fkbp-Like Protein, Fkbp51, I		7e-21
1kt0_A	457	Structure Of The Large Fkbp-like Protein, Fkbp51, I		8e-21
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		1e-11
3jxv_A	356	Crystal Structure Of The 3 Fkbp Domains Of Wheat Fk		3e-10
3jym_A	377	Crystal Structure Of The 3 Fkbp Domains Of Wheat Fk		4e-10
3o5e_A	144	Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144		1e-09
4drh_A	144	Co-crystal Structure Of The Ppiase Domain Of Fkbp51		2e-09
3o5g_A	128	Fk1 Domain Of Fkbp51, Crystal Form I Length = 128		2e-09
4apo_A	165	Aip Tpr Domain In Complex With Human Tomm20 Peptide		2e-09
3o5l_A	128	Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Le		2e-09
1a17_A	166	Tetratricopeptide Repeats Of Protein Phosphatase 5		3e-09
3o5d_A	264	Crystal Structure Of A Fragment Of Fkbp51 Comprisin		3e-09
2fbn_A	198	Plasmodium Falciparum Putative Fk506-Binding Protei		7e-09
1rot_A	149	Structure Of Fkbp59-I, The N-Terminal Domain Of A 5		1e-08
1n1a_A	140	Crystal Structure Of The N-Terminal Domain Of Human		1e-08
1wao_1	477	Pp5 Structure Length = 477		2e-08
4drj_A	144	O-crystal Structure Of The Ppiase Domain Of Fkbp52,		2e-08
2bug_A	140	Solution Structure Of The Tpr Domain From Protein P		2e-08
1q1c_A	280	Crystal Structure Of N(1-260) Of Human Fkbp52 Lengt		2e-08
3uqi_A	108	Crystallographic Structure Of Fkbp12 From Aedes Aeg		5e-08
1c9h_A	107	Crystal Structure Of Fkbp12.6 In Complex With Rapam		5e-08
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		6e-08
2dg4_A	107	Fk506-Binding Protein Mutant Wf59 Complexed With Ra		3e-07
2dba_A	148	The Solution Structure Of The Tetratrico Peptide Re		3e-07
4aif_A	144	Aip Tpr Domain In Complex With Human Hsp90 Peptide		3e-07
1fkk_A	107	Atomic Structure Of Fkbp12, An Immunophilin Binding		8e-07
1r9h_A	135	Structural Genomics Of C.Elegans: Fkbp-Type Peptidy		1e-06
3h9r_B	109	Crystal Structure Of The Kinase Domain Of Type I Ac		1e-06
2fap_A	107	The Structure Of The Immunophilin-Immunosuppressant		1e-06
1fkb_A	107	Atomic Structure Of The Rapamycin Human Immunophili		1e-06
2dg9_A	107	Fk506-Binding Protein Mutant Wl59 Complexed With Ra		2e-06
1bkf_A	107	Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX		2e-06
1tco_C	107	Ternary Complex Of A Calcineurin A Fragment, Calcin		2e-06
2ppp_A	107	Crystal Structure Of E60q Mutant Of Fkbp12 Length =		3e-06
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		3e-06
2ki3_A	126	Structural And Biochemical Characterization Of Fk50		4e-06
3rkv_A	162	C-Terminal Domain Of Protein C56c10.10, A Putative		5e-06
2ppo_A	107	Crystal Structure Of E60a Mutant Of Fkbp12 Length =		5e-06
1bl4_A	107	Fkbp Mutant F36v Complexed With Remodeled Synthetic		5e-06
1eym_A	107	Fk506 Binding Protein Mutant, Homodimeric Complex L		6e-06
1yat_A	113	Improved Calcineurin Inhibition By Yeast Fkbp12-Dru		1e-05
3fp2_A	537	Crystal Structure Of Tom71 Complexed With Hsp82 C-T		2e-05
3lca_A	533	Structure Of Tom71 Complexed With Hsp70 Ssa1 C Term		2e-05
2lgo_A	130	Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prol		2e-05
3uqa_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		2e-05
3uqb_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		6e-05
3uf8_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		6e-05
2vn1_A	129	Crystal Structure Of The Fk506-Binding Domain Of Pl		8e-05
2ofn_A	135	Solution Structure Of Fk506-Binding Domain (Fkbd)of		8e-05
4ggq_C	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		8e-05
3vaw_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		8e-05
2f4e_A	180	N-Terminal Domain Of Fkbp42 From Arabidopsis Thalia		1e-04
2pbc_A	102	Fk506-Binding Protein 2 Length = 102		1e-04
2lni_A	133	Solution Nmr Structure Of Stress-Induced-Phosphopro		4e-04
3b7x_A	134	Crystal Structure Of Human Fk506-Binding Protein 6		4e-04
1pbk_A	116	Homologous Domain Of Human Fkbp25 Length = 116		8e-04

>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336

Iteration: 1
 Score =  114 bits (286), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 90/324 (27%), Positives = 165/324 (50%), Gaps = 40/324 (12%)
Query: 51  MLGDGRLIKRRIRDGKG-EFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 109
           M  DG +I+R    G+G   P +  + +  L  +YK  L               D + L 
Sbjct: 21  MEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLF--------------DQRELR 66
Query: 110 FSSGEGL---VPEGFEMCVRLMLPGEIALVTCPPDYAY-----DKFLRPANVPEGAHIQW 161
           F  GEG    +P G E  ++ M  GE ++V   P YA+     +KF     +P  A +++
Sbjct: 67  FEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKF----QIPPNAELKY 122
Query: 162 EIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNP 221
           E+ L  FEK K+   ++ +  ++++  ++  G   FKEGK++ A  +Y+K++    + + 
Sbjct: 123 ELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS 182
Query: 222 QDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA 281
             +EE +     R   HLN+A C LKL     +IE+CNK L+ +  + KGL+RRG A++A
Sbjct: 183 FSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLA 242
Query: 282 LGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVE---SKARKQFKGLFDKKPGE 338
           + +FE A+ DF+ ++++     P+  AA ++L   +Q +    ++ +K +  +F++   E
Sbjct: 243 VNDFELARADFQKVLQLY----PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEE 298
Query: 339 ISEVGIENQGEDQAAGKNENDDSE 362
                 EN+ + +A+  +   D+E
Sbjct: 299 ------ENKAKAEASSGDHPTDTE 316

>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336

Iteration: 1
 Score =  108 bits (271), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 162/324 (50%), Gaps = 40/324 (12%)
Query: 51  MLGDGRLIKRRIRDGKG-EFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 109
           M  DG +I+R    G+G   P +  + +  L  +YK  L               D + L 
Sbjct: 21  MEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLF--------------DQRELR 66
Query: 110 FSSGEGL---VPEGFEMCVRLMLPGEIALVTCPPDYAY-----DKFLRPANVPEGAHIQW 161
           F  GEG    +P G E  ++    GE ++V   P YA+     +KF     +P  A +++
Sbjct: 67  FEIGEGENLDLPYGLERAIQRXEKGEHSIVYLKPSYAFGSVGKEKF----QIPPNAELKY 122
Query: 162 EIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNP 221
           E+ L  FEK K+    + +  ++++  ++  G   FKEGK++ A  +Y+K++    + + 
Sbjct: 123 ELHLKSFEKAKESWEXNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS 182
Query: 222 QDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA 281
             +EE +     R   HLN+A C LKL     +IE+CNK L+ +  + KGL RRG A++A
Sbjct: 183 FSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLA 242
Query: 282 LGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVE---SKARKQFKGLFDKKPGE 338
           + +FE A+ DF+ ++++     P+  AA ++L   +Q +    ++ +K +  +F++   E
Sbjct: 243 VNDFELARADFQKVLQLY----PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEE 298
Query: 339 ISEVGIENQGEDQAAGKNENDDSE 362
                 EN+ + +A+  +   D+E
Sbjct: 299 ------ENKAKAEASSGDHPTDTE 316

>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From Arabidopsis Thaliana Length = 338

Iteration: 1
 Score =  101 bits (251), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 98/300 (32%), Positives = 147/300 (49%), Gaps = 36/300 (12%)
Query: 54  DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 113
           D ++ K+ I++G G  P       S   +HY+    N + K F DT   ++ QP+E   G
Sbjct: 48  DEKVSKQIIKEGHGSKPSKY----STCFLHYRAWTKNSQHK-FEDTW--HEQQPIELVLG 100
Query: 114 -EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDK---FLRPANVPEGAHIQWEIELLGFE 169
            E     G  + V  M  GE ALV    + AY K   F  P NVP  A + +E+E++GF+
Sbjct: 101 KEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFP-NVPPMADLLYEVEVIGFD 159
Query: 170 KPKDWTGLSFDGIMDE----AEKIRVTGNRLFKEGKFELAKAKYEKVLR----DFN---H 218
           + K+    S D  ++E    A++ ++ GN LFKE K E A  +YE  +     DF    +
Sbjct: 160 ETKEGKARS-DMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLY 218
Query: 219 VNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA 278
              QD     + +  +N  HLN+AACL+KL    ++I  CN VL     + K L+RRG A
Sbjct: 219 GKYQD-----MALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKA 273
Query: 279 YMALGEFEEAQRDFEMMMKVDKSSEPDATA---ALSKLKKQRQEVESKARKQFKGLFDKK 335
              LG+ + A+ DF    K      PD  A    L  L +Q + +  K ++ +KG+F  K
Sbjct: 274 KAELGQMDSARDDFRKAQKY----APDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGK 329

>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 98.2 bits (243), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 140/289 (48%), Gaps = 18/289 (6%)
Query: 50  DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 109
           D+L DG +I+R  R G+G      P   + + +H +G       +VF       D + + 
Sbjct: 141 DLLEDGGIIRRTKRRGEG---YSNPNEGARVQIHLEGRCGG---RVF-------DCRDVA 187
Query: 110 FSSGEGL---VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIEL 165
           F+ GEG    +P G +  +  M   E  ++   P Y + +  +P   +   A + +E+ L
Sbjct: 188 FTVGEGEDHDIPIGIDKALEKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTL 247
Query: 166 LGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDE 225
             FEK K+   +     +++A  ++  G   FK GK+  A  +Y K++          ++
Sbjct: 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEK 307
Query: 226 EGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF 285
           E K          LN+A C LKL E  K++E C+K L  + A+ KGLYRRG A + + EF
Sbjct: 308 ESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEF 367
Query: 286 EEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDK 334
           E A+ DFE +++V+  ++  A   +   +K+ +E   + R+ +  +F K
Sbjct: 368 ESAKGDFEKVLEVNPQNKA-ARLQIFMCQKKAKEHNERDRRTYANMFKK 415

>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 98.2 bits (243), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 138/289 (47%), Gaps = 18/289 (6%)
Query: 50  DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 109
           D+  DG +I+R  R G+G      P   + + +H +G          +D R       + 
Sbjct: 141 DLFEDGGIIRRTKRKGEG---YSNPNEGATVEIHLEGRCGGR----MFDCR------DVA 187
Query: 110 FSSGEGL---VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIEL 165
           F+ GEG    +P G +  +  M   E  ++   P Y + +  +P   +   A + +E+ L
Sbjct: 188 FTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTL 247
Query: 166 LGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDE 225
             FEK K+   +     +++A  ++  G   FK GK+  A  +Y K++          ++
Sbjct: 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEK 307
Query: 226 EGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF 285
           E K          LN+A C LKL E  K++E C+K L  + A+ KGLYRRG A + + EF
Sbjct: 308 ESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEF 367
Query: 286 EEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDK 334
           E A+ DFE +++V+  ++  A   +S  +K+ +E   + R+ +  +F K
Sbjct: 368 ESAKGDFEKVLEVNPQNKA-ARLQISMCQKKAKEHNERDRRIYANMFKK 415

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 83/154 (53%), Gaps = 6/154 (3%)
Query: 180 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLR--DFNHVNPQDDEEGKVFVGKRNLL 237
           D I+  +E ++  GN  FK   +E+A  KY KVLR  + +    +D +  K+     + +
Sbjct: 217 DKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCV 276
Query: 238 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 297
            LN+ AC LK+ + + ++++C + L+ +P++ K LYRR   +  L E+++A  D +   +
Sbjct: 277 -LNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335
Query: 298 V---DKSSEPDATAALSKLKKQRQEVESKARKQF 328
           +   DK+ + +      K+K Q+ + ++   K F
Sbjct: 336 IAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMF 369

>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73 Length = 356

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 63/120 (52%), Gaps = 6/120 (5%)
Query: 71  MDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLP 130
            D P     + VHY G LL+ +K   +D+  D D    +F  G+G V +G++  ++ M  
Sbjct: 24  WDTPEVGDEVEVHYTGTLLDGKK---FDSSRDRD-DTFKFKLGQGQVIKGWDQGIKTMKK 79
Query: 131 GEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWT--GLSFDGIMDEAEK 188
           GE AL T PP+ AY +   P  +P  A +Q+++ELL +   +D    G  F  I+ E +K
Sbjct: 80  GENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDK 139

>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73 Length = 377

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 63/120 (52%), Gaps = 6/120 (5%)
Query: 71  MDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLP 130
            D P     + VHY G LL+ +K   +D+  D D    +F  G+G V +G++  ++ M  
Sbjct: 40  WDTPEVGDEVEVHYTGTLLDGKK---FDSSRDRD-DTFKFKLGQGQVIKGWDQGIKTMKK 95
Query: 131 GEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWT--GLSFDGIMDEAEK 188
           GE AL T PP+ AY +   P  +P  A +Q+++ELL +   +D    G  F  I+ E +K
Sbjct: 96  GENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDK 155

>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 54  DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 113
           D  ++K   R G GE   + P+    + VHYKG L N +K   +D+  D + +P  FS G
Sbjct: 34  DRGVLKIVKRVGNGE---ETPMIGDKVYVHYKGKLSNGKK---FDSSHDRN-EPFVFSLG 86
Query: 114 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 169
           +G V + +++ V  M  GEI  + C P+YAY        +P  A + +EIELL F+
Sbjct: 87  KGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFK 142

>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51, Rapamycin And The Frb Fragment Of Mtor At Low Ph Length = 144

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 54  DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 113
           D  ++K   R G GE   + P+    + VHYKG L N +K   +D+  D + +P  FS G
Sbjct: 34  DRGVLKIVKRVGNGE---ETPMIGDKVYVHYKGKLSNGKK---FDSSHDRN-EPFVFSLG 86
Query: 114 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 169
           +G V + +++ V  M  GEI  + C P+YAY        +P  A + +EIELL F+
Sbjct: 87  KGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFK 142

>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I Length = 128

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 54  DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 113
           D  ++K   R G GE   + P+    + VHYKG L N +K   +D+  D + +P  FS G
Sbjct: 18  DRGVLKIVKRVGNGE---ETPMIGDKVYVHYKGKLSNGKK---FDSSHDRN-EPFVFSLG 70
Query: 114 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 169
           +G V + +++ V  M  GEI  + C P+YAY        +P  A + +EIELL F+
Sbjct: 71  KGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFK 126

>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide Length = 165

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 77/147 (52%), Gaps = 3/147 (2%)
Query: 189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVG---KRNLLHLNVAACL 245
           I   GNRL++EG  + A AKY   +    ++  ++      ++    +   L LN   C 
Sbjct: 17  IHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPLLLNYCQCK 76
Query: 246 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPD 305
           L + E  + ++ C+ +L+    +VK  ++RG A+ A+   +EAQ DF  ++++D +  P 
Sbjct: 77  LVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLELDPALAPV 136
Query: 306 ATAALSKLKKQRQEVESKARKQFKGLF 332
            +  L  L+ + ++ + + + +F+G+F
Sbjct: 137 VSRELQALEARIRQKDEEDKARFRGIF 163

>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Length = 128

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 54  DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 113
           D  ++K   R G GE   + P+    + VHYKG L N +K   +D+  D + +P  FS G
Sbjct: 18  DRGVLKIVKRVGNGE---ETPMIGDKVYVHYKGKLSNGKK---FDSSHDRN-EPFVFSLG 70
Query: 114 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 169
           +G V + +++ V  M  GEI  + C P+YAY        +P  A + +EIELL F+
Sbjct: 71  KGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFK 126

>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5 Length = 166

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 15/119 (12%)
Query: 180 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHL 239
           DG +  AE+++   N  FK   +E A   Y + +     +NP +     ++ G R+L +L
Sbjct: 7   DGALKRAEELKTQANDYFKAKDYENAIKFYSQAI----ELNPSN----AIYYGNRSLAYL 58
Query: 240 NVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 298
                   LG+  ++IE   K       ++KG YRR  + MALG+F  A RD+E ++KV
Sbjct: 59  RTECYGYALGDATRAIELDKK-------YIKGYYRRAASNMALGKFRAALRDYETVVKV 110

>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The Fk1 And Fk2 Domains Length = 264

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 7/107 (6%)
Query: 63  RDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFE 122
           R G GE   + P+    + VHYKG L N +K   +D+  D + +P  FS G+G V + ++
Sbjct: 43  RVGNGE---ETPMIGDKVYVHYKGKLSNGKK---FDSSHDRN-EPFVFSLGKGQVIKAWD 95
Query: 123 MCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 169
           + V  M  GEI  + C P+YAY        +P  A + +EIELL F+
Sbjct: 96  IGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFK 142

>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein Pfl2275c, C-Terminal Tpr-Containing Domain Length = 198

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 78/154 (50%), Gaps = 12/154 (7%)
Query: 189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNL---LHLNVAACL 245
           I+  GN  FK+ +   A  KY++ L  F H    DD+   +   K+N+    +LN+A C 
Sbjct: 41  IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ--ILLDKKKNIEISCNLNLATCY 98
Query: 246 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS--- 302
            K  +  K+I+  +KVL  +  +VK LY+ G+A M  G  EEA+ +      ++ ++   
Sbjct: 99  NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI 158
Query: 303 EPDATAALSKLKKQRQEVESKARKQFKGLFDKKP 336
                  ++KLK+ R+    K +  F G+FDK P
Sbjct: 159 RNSYELCVNKLKEARK----KDKLTFGGMFDKGP 188

>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda Fk506-Binding Protein, Nmr, Minimized Average Structure Length = 149

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 60/116 (51%), Gaps = 7/116 (6%)
Query: 54  DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 113
           D  ++K   R+G G    + P+    + VHY G LL+  K   +D+ +D   +   F  G
Sbjct: 29  DEGVLKVIKREGTG---TETPMIGDRVFVHYTGWLLDGTK---FDSSLDRKDK-FSFDLG 81
Query: 114 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 169
           +G V + +++ V  M  GE+  +TC P+YAY     P  +P  A + +E+EL  F+
Sbjct: 82  KGEVIKAWDIAVATMKVGELCRITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFK 137

>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52 Length = 140

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 7/116 (6%)
Query: 54  DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 113
           D  ++K   R+G G    + P+    + VHY G LL+  K   +D+ +D   +   F  G
Sbjct: 30  DEGVLKVIKREGTG---TEMPMIGDRVFVHYTGWLLDGTK---FDSSLDRKDK-FSFDLG 82
Query: 114 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 169
           +G V + +++ +  M  GE+  +TC P+YAY     P  +P  A + +E+EL  F+
Sbjct: 83  KGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFK 138

>pdb|1WAO|1 Chain 1, Pp5 Structure Length = 477

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 20/175 (11%)
Query: 181 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLN 240
           G +  AE+++   N  FK   +E A   Y + +     +NP +     ++ G R+L +L 
Sbjct: 1   GALKRAEELKTQANDYFKAKDYENAIKFYSQAIE----LNPSN----AIYYGNRSLAYLR 52
Query: 241 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 300
                  LG+  ++IE   K       ++KG YRR  + MALG+F  A RD+E ++KV  
Sbjct: 53  TECYGYALGDATRAIELDKK-------YIKGYYRRAASNMALGKFRAALRDYETVVKV-- 103
Query: 301 SSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPGEISEVGIENQG-EDQAAG 354
             +P    A  K ++  + V+ KA ++     + K   +  + IE+   ED+ +G
Sbjct: 104 --KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSG 156

>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52, Rapamycin And The Frb Fragment Of Mtor Length = 144

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 7/116 (6%)
Query: 54  DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 113
           D  ++K   R+G G    + P+    + VHY G LL+  K   +D+ +D   +   F  G
Sbjct: 34  DEGVLKVIKREGTG---TEMPMIGDRVFVHYTGWLLDGTK---FDSSLDRKDK-FSFDLG 86
Query: 114 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 169
           +G V + +++ +  M  GE+  +TC P+YAY     P  +P  A + +E+EL  F+
Sbjct: 87  KGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFK 142

>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52 Length = 280

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 7/115 (6%)
Query: 54  DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 113
           D  ++K   R+G G    + P+    + VHY G LL+  K   +D+ +D   +   F  G
Sbjct: 50  DEGVLKVIKREGTG---TEMPMIGDRVFVHYTGWLLDGTK---FDSSLDRKDK-FSFDLG 102
Query: 114 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF 168
           +G V + +++ +  M  GE+  +TC P+YAY     P  +P  A + +E+EL  F
Sbjct: 103 KGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 157

>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti Length = 108

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 74  PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 133
           P    +  VHY G L   + KVF  +R    G+P  F+ G G V  G++  V  M  G+ 
Sbjct: 17  PKAGQVAVVHYTGTL--ADGKVFDSSRTR--GKPFRFTVGRGEVIRGWDEGVAQMSVGQR 72
Query: 134 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 169
           A + C PDYAY     P  +P  A + +++ELL  E
Sbjct: 73  AKLVCSPDYAYGSRGHPGVIPPNATLTFDVELLRVE 108

>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin Length = 107

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 4/96 (4%)
Query: 74  PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 133
           P       VHY GML N +K   +D+  D + +P +F  G+  V +GFE     M  G+ 
Sbjct: 16  PKKGQTCVVHYTGMLQNGKK---FDSSRDRN-KPFKFRIGKQEVIKGFEEGAAQMSLGQR 71
Query: 134 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 169
           A +TC PD AY     P  +P  A + +++ELL  E
Sbjct: 72  AKLTCTPDVAYGATGHPGVIPPNATLIFDVELLNLE 107

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 15/118 (12%)
Query: 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACL 245
           A++ +  GN  FK+G +  A       +R +N    +D E          +L+ N AACL
Sbjct: 13  AQEEKNKGNEYFKKGDYPTA-------MRHYNEAVKRDPENA--------ILYSNRAACL 57
Query: 246 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 303
            KL E +++++ C+  +  +   +KG  R+    +A+ E+ +AQR +E  ++VD S+E
Sbjct: 58  TKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE 115

>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin Length = 107

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 74  PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 133
           P       VHY GML  E+ K F  +R  N  +P +F  G+  V  GFE  V  M  G+ 
Sbjct: 16  PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGFEEGVAQMSVGQR 71
Query: 134 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 169
           A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 72  AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 12/113 (10%)
Query: 187 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLL 246
           E++R  GN LFK G +  A A Y + L       PQD          + +LH N AAC L
Sbjct: 29  EQLRKEGNELFKCGDYGGALAAYTQAL--GLDATPQD----------QAVLHRNRAACHL 76
Query: 247 KLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 299
           KL +  K+    +K ++ +   VK LYRR  A   LG  ++A  D +  + ++
Sbjct: 77  KLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLE 129

>pdb|4AIF|A Chain A, Aip Tpr Domain In Complex With Human Hsp90 Peptide Length = 144

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 65/129 (50%), Gaps = 3/129 (2%)
Query: 189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVG---KRNLLHLNVAACL 245
           I   GNRL++EG  + A AKY   +    ++  ++      ++    +   L LN   C 
Sbjct: 11  IHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPLLLNYCQCK 70
Query: 246 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPD 305
           L + E  + ++ C+ +L+    +VK  ++RG A+ A+   +EAQ DF  ++++D +  P 
Sbjct: 71  LVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLELDPALAPV 130
Query: 306 ATAALSKLK 314
            +  L  L+
Sbjct: 131 VSRELQALE 139

>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding Protein Length = 107

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 74  PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 133
           P       VHY GML  E+ K F  +R  N  +P +F  G+  V  G+E  V  M  G+ 
Sbjct: 16  PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFVLGKQEVIRGWEEGVAQMSVGQR 71
Query: 134 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 169
           A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 72  AKLTISPDYAYGATGHPGIIPPNATLIFDVELLKLE 107

>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl Isomerase Length = 135

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 7/113 (6%)
Query: 54  DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 113
           DG ++K   ++G+G      P   + + VHY G L N  K   +D+  D  G    F+ G
Sbjct: 13  DGGVLKLIKKEGQGVVK---PTTGTTVKVHYVGTLENGTK---FDSSRDR-GDQFSFNLG 65
Query: 114 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELL 166
            G V +G+++ V  M  GE+A  T   DY Y     P  +P GA + +E+EL 
Sbjct: 66  RGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELF 118

>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin Length = 109

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 74  PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 133
           P       VHY GML  E+ K F  +R  N  +P +F  G+  V  G+E  V  M  G+ 
Sbjct: 18  PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGWEEGVAQMSVGQR 73
Query: 134 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 169
           A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 74  AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 109

>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With Huma Length = 107

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 74  PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 133
           P       VHY GML  E+ K F  +R  N  +P +F  G+  V  G+E  V  M  G+ 
Sbjct: 16  PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGWEEGVAQMSVGQR 71
Query: 134 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 169
           A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 72  AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp- 12 Complex Length = 107

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 74  PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 133
           P       VHY GML  E+ K F  +R  N  +P +F  G+  V  G+E  V  M  G+ 
Sbjct: 16  PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGWEEGVAQMSVGQR 71
Query: 134 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 169
           A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 72  AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin Length = 107

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 74  PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 133
           P       VHY GML  E+ K F  +R  N  +P +F  G+  V  G E  V  M  G+ 
Sbjct: 16  PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGLEEGVAQMSVGQR 71
Query: 134 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 169
           A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 72  AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH Immunosuppressant Fk506 Length = 107

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 74  PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 133
           P       VHY GML  E+ K F  +R  N  +P +F  G+  V  G+E  V  M  G+ 
Sbjct: 16  PKRGQTCVVHYTGML--EDGKKFDSSRDKN--KPFKFMLGKQEVIRGWEEGVAQMSVGQR 71
Query: 134 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 169
           A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 72  AKLTISPDYAYGATGVPGIIPPHATLVFDVELLKLE 107

>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin B, Fkbp12 And The Immunosuppressant Drug Fk506 (tacrolimus) Length = 107

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 81  CVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPP 140
            VHY GML  E+ K F  +R  N  +P +F  G+  V  G+E  V  M  G+ A +T  P
Sbjct: 23  VVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISP 78
Query: 141 DYAYDKFLRPANVPEGAHIQWEIELLGFE 169
           DYAY     P  +P  A + +++ELL  E
Sbjct: 79  DYAYGATGHPGIIPPHATLVFDVELLKLE 107

>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12 Length = 107

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 74  PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 133
           P       VHY GML  E+ K F  +R  N  +P +F  G+  V  G++  V  M  G+ 
Sbjct: 16  PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGWQEGVAQMSVGQR 71
Query: 134 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 169
           A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 72  AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 22/142 (15%)
Query: 181 GIMD---EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLL 237
           G MD    AE  +  GN  +K+G ++ A   Y+K L     ++P +              
Sbjct: 1   GAMDPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALE----LDPNNASA----------- 45
Query: 238 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 297
             N+     K G+ +K+IE   K L+ +P + K  YRRG AY   G++++A  D++  ++
Sbjct: 46  WYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALE 105
Query: 298 VDKSSEPDATAALSKLKKQRQE 319
           +D    P+   A   L   +Q+
Sbjct: 106 LD----PNNAKAKQNLGNAKQK 123

>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506 Binding Domain From Plasmodium Vivax Length = 126

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 4/115 (3%)
Query: 54  DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 113
           DG ++K  +R G+G    + P   + + VHY G L     KVF  +R  N   P +F  G
Sbjct: 14  DGGVVKTILRKGEGG-EENAPKKGNEVTVHYVGKL-ESSGKVFDSSRERN--VPFKFHLG 69
Query: 114 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF 168
           +G V +G+++CV  M   E   V     Y Y +     ++P  + + +EIEL+ F
Sbjct: 70  QGEVIKGWDICVASMTKNEKCSVRLDSKYGYGEEGCGESIPGNSVLIFEIELISF 124

>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative Peptidylprolyl Isomerase, From Caenorhabditis Elegans Length = 162

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 78/156 (50%), Gaps = 3/156 (1%)
Query: 180 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDD--EEGKVFVGKRNL- 236
           D  +   E +R  GN LF +  ++ A   Y   L   + +  ++   E   V + ++N+ 
Sbjct: 5   DDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIP 64
Query: 237 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 296
           L+ N++ C L +G+  ++ E  ++VL     + K L+RR  A +A  + +EA+ D ++++
Sbjct: 65  LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLL 124
Query: 297 KVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLF 332
           +   ++       +  + ++R E ++ +R  +  +F
Sbjct: 125 RNHPAAASVVAREMKIVTERRAEKKADSRVTYSKMF 160

>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12 Length = 107

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 74  PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 133
           P       VHY GML  E+ K F  +R  N  +P +F  G+  V  G+   V  M  G+ 
Sbjct: 16  PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGWAEGVAQMSVGQR 71
Query: 134 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 169
           A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 72  AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand Length = 107

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 4/96 (4%)
Query: 74  PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 133
           P       VHY GML  + KKV  D+  D + +P +F  G+  V  G+E  V  M  G+ 
Sbjct: 16  PKRGQTCVVHYTGML-EDGKKV--DSSRDRN-KPFKFMLGKQEVIRGWEEGVAQMSVGQR 71
Query: 134 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 169
           A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 72  AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex Length = 107

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 74  PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 133
           P       VHY GML + +K    D+  D + +P +F  G+  V  G+E  V  M  G+ 
Sbjct: 16  PKRGQTCVVHYTGMLEDGKK---MDSSRDRN-KPFKFMLGKQEVIRGWEEGVAQMSVGQR 71
Query: 134 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 169
           A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 72  AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug Complexes. Crystallographic And Functional Analysis Length = 113

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 7/113 (6%)
Query: 54  DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 113
           +G +   RI  G G      P    L+ +HY G L N +K   +D+ VD  G P + + G
Sbjct: 5   EGNVKIDRISPGDGA---TFPKTGDLVTIHYTGTLENGQK---FDSSVDR-GSPFQCNIG 57
Query: 114 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELL 166
            G V +G+++ +  +  GE A +T P  YAY     P  +P  + + +++ELL
Sbjct: 58  VGQVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFPGLIPPNSTLVFDVELL 110

>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal Fragment Length = 537

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 59/140 (42%), Gaps = 21/140 (15%)
Query: 156 GAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRD 215
           G+H+  E ++   +      GLS       A +++  GN  F    F  A   Y+  +  
Sbjct: 1   GSHMNGEPDIAQLK------GLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIE- 53
Query: 216 FNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRR 275
              ++P +            + + N++AC +  G+  K IE   K L+  P H K L RR
Sbjct: 54  ---LDPNEP-----------VFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRR 99
Query: 276 GMAYMALGEFEEAQRDFEMM 295
             A  +LG F +A  D  ++
Sbjct: 100 ASANESLGNFTDAMFDLSVL 119

>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal Tail Indicating Conformational Plasticity Length = 533

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 236 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMM 295
           + + N++AC +  G+  K IE   K L+  P H K L RR  A  +LG F +A  D  ++
Sbjct: 56  VFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVL 115

>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl Cis-Trans Isomerase From Giardia Lamblia, Seattle Structural Genomics Center For Infectious Disease Target Gilaa.00840.A Length = 130

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 56  RLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEG 115
           +L K+ +  G G   +  P     + VHY G     + K F  +R  + G+P +F+ G G
Sbjct: 25  QLEKKVLTPGDG---VTKPQAGKKVTVHYDGRF--PDGKQFDSSR--SRGKPFQFTLGAG 77
Query: 116 LVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELL 166
            V +G++  V  M  GE AL T P   AY +   P  +P  A + +E+ELL
Sbjct: 78  EVIKGWDQGVATMTLGEKALFTIPYQLAYGERGYPPVIPPKATLVFEVELL 128

>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation A54e From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 80  LCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCP 139
           + VHY G L + +K   +D+  D +  P EF  G G+V +G++  V+ M  G +  +T P
Sbjct: 125 VSVHYTGWLTDGQK---FDSSKDRN-DPFEFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 180
Query: 140 PDYAYDKFLRPANVPEGAHIQWEIELL 166
           P   Y        +P  A + +E+ELL
Sbjct: 181 PQLGYGARGAGGVIPPNATLVFEVELL 207

>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation D44g From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 80  LCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCP 139
           + VHY G L + +K  F  ++  ND  P  F  G G+V +G++  V+ M  G +  +T P
Sbjct: 125 VSVHYTGWLTDGQK--FGSSKDRND--PFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 180
Query: 140 PDYAYDKFLRPANVPEGAHIQWEIELL 166
           P   Y        +P  A + +E+ELL
Sbjct: 181 PQLGYGARGAGGVIPPNATLVFEVELL 207

>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With A G95a Surface Mutation From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 80  LCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCP 139
           + VHY G L + +K   +D+  D +  P  F  G G+V +G++  V+ M  G +  +T P
Sbjct: 125 VSVHYTGWLTDGQK---FDSSKDRN-DPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 180
Query: 140 PDYAYDKFLRPANVPEGAHIQWEIELL 166
           P   Y        +P  A + +E+ELL
Sbjct: 181 PQLGYGARGAAGVIPPNATLVFEVELL 207

>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of Plasmodium Falciparum Fkbp35 In Complex With Fk506 Length = 129

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 4/119 (3%)
Query: 50  DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 109
           ++  DG +IK  ++ G  E   + P   + + VHY G L  E     +D+  D +  P +
Sbjct: 11  ELTADGGVIKTILKKGD-EGEENIPKKGNEVTVHYVGKL--ESTGKVFDSSFDRN-VPFK 66
Query: 110 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF 168
           F   +G V +G+++CV  M   E  LV     Y Y       ++P  + + +EIELL F
Sbjct: 67  FHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSF 125

>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35 From Plasmodium Falciparum Length = 135

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 4/119 (3%)
Query: 50  DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 109
           ++  DG +IK  ++ G  E   + P   + + VHY G L  E     +D+  D +  P +
Sbjct: 11  ELTADGGVIKTILKKGD-EGEENIPKKGNEVTVHYVGKL--ESTGKVFDSSFDRN-VPFK 66
Query: 110 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF 168
           F   +G V +G+++CV  M   E  LV     Y Y       ++P  + + +EIELL F
Sbjct: 67  FHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSF 125

>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed With Cj40 Length = 209

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 80  LCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCP 139
           + VHY G L + +K   +D+  D +  P  F  G G+V +G++  V+ M  G +  +T P
Sbjct: 125 VSVHYTGWLTDGQK---FDSSKDRN-DPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 180
Query: 140 PDYAYDKFLRPANVPEGAHIQWEIELL 166
           P   Y        +P  A + +E+ELL
Sbjct: 181 PQLGYGARGAGGVIPPNATLVFEVELL 207

>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation V3i From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 80  LCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCP 139
           + VHY G L + +K  F  ++  ND  P  F  G G+V +G++  V+ M  G +  +T P
Sbjct: 125 VSVHYTGWLTDGQK--FDSSKDRND--PFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 180
Query: 140 PDYAYDKFLRPANVPEGAHIQWEIELL 166
           P   Y        +P  A + +E+ELL
Sbjct: 181 PQLGYGARGAGGVIPPNATLVFEVELL 207

>pdb|2F4E|A Chain A, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana Length = 180

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 62/124 (50%), Gaps = 12/124 (9%)
Query: 54  DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 113
           D ++ K+ I++G G  P       S   +HY+    N + K F DT   ++ QP+E   G
Sbjct: 48  DEKVSKQIIKEGHGSKPSKY----STCFLHYRAWTKNSQHK-FEDTW--HEQQPIELVLG 100
Query: 114 -EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDK---FLRPANVPEGAHIQWEIELLGFE 169
            E     G  + V  M  GE ALV    + AY K   F  P NVP  A + +E+E++GF+
Sbjct: 101 KEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFP-NVPPMADLLYEVEVIGFD 159
Query: 170 KPKD 173
           + K+
Sbjct: 160 ETKE 163

>pdb|2PBC|A Chain A, Fk506-Binding Protein 2 Length = 102

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 79  LLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTC 138
           +L +HY G L   E    +D+ +  + QP  FS G G V +G++  +  M  GE   +  
Sbjct: 11  VLHMHYTGKL---EDGTEFDSSLPQN-QPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVI 66
Query: 139 PPDYAYDKFLRPANVPEGAHIQWEIELLGFEK 170
           P +  Y +   P  +P GA + +E+ELL  E+
Sbjct: 67  PSELGYGERGAPPKIPGGATLVFEVELLKIER 98

>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 15/123 (12%)
Query: 184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 243
           D A  ++  GN  F++G +  A   Y + ++     NP+D +           L+ N AA
Sbjct: 14  DLALMVKNKGNECFQKGDYPQAMKHYTEAIKR----NPKDAK-----------LYSNRAA 58
Query: 244 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 303
           C  KL E + +++ C + +   P  +KG  R+  A  A+ ++ +A   ++  + +D S +
Sbjct: 59  CYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCK 118
Query: 304 PDA 306
             A
Sbjct: 119 EAA 121

>pdb|3B7X|A Chain A, Crystal Structure Of Human Fk506-Binding Protein 6 Length = 134

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 7/122 (5%)
Query: 47  QVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQ 106
           ++ D+ GD  ++K  IR+G G    D    D+ + V Y G L + ++   +D+       
Sbjct: 18  RMLDISGDRGVLKDVIREGAG----DLVAPDASVLVKYSGYLEHMDRP--FDSNYFRK-T 70
Query: 107 PLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELL 166
           P     GE +   G E+ +  M  GE+A     P+YAY     P  +P    + +EIELL
Sbjct: 71  PRLMKLGEDITLWGMELGLLSMRRGELARFLFKPNYAYGTLGCPPLIPPNTTVLFEIELL 130
Query: 167 GF 168
            F
Sbjct: 131 DF 132

>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25 Length = 116

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 10/103 (9%)
Query: 71  MDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDN------DGQPLEFSSGEGLVPEGFEMC 124
            + P    ++   Y G L   +    +DT +        + +PL F  G G V  G++  
Sbjct: 14  TNFPKKGDVVHCWYTGTL---QDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEA 70
Query: 125 VRLMLPGEIALVTCPPDYAYDKFLRP-ANVPEGAHIQWEIELL 166
           +  M  GE A +   P++AY K  +P A +P  A + +E+EL+
Sbjct: 71  LLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELV 113

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	414
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	9e-79
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	5e-15
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	2e-77
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	9e-71
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	4e-47
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	6e-44
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	2e-36
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	9e-34
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	4e-20
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	3e-18
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	4e-28
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	1e-25
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	9e-25
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	2e-24
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	7e-24
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	9e-24
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	2e-23
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	7e-23
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	1e-22
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	8e-22
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	1e-21
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	3e-21
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	1e-20
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-20
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-15
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-13
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-06
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	1e-19
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	2e-19
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-19
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-16
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-14
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-08
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	3e-19
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	6e-16
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	6e-18
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	9e-18
2l6j_A	111	TPR repeat-containing protein associated with HSP;	2e-17
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	3e-17
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	4e-17
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	8e-17
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	2e-16
2ppn_A	107	FK506-binding protein 1A; high resolution protein	2e-16
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-16
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-12
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	5e-10
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-09
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-16
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-11
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-06
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	5e-16
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	5e-16
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	7e-16
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-15
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-09
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-04
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	4e-15
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-14
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	4e-14
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	9e-14
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	1e-13
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	5e-13
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-12
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	1e-11
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	1e-11
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	3e-11
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-11
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-08
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-08
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-08
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-06
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	1e-10
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-10
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	9e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-10
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-10
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-09
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-05
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	4e-10
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-10
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	6e-10
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	6e-08
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-10
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-10
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-09
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-09
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-06
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	5e-10
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	4e-07
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	7e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	9e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-05
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-09
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-08
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-09
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-09
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	5e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	7e-05
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-09
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	1e-04
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	2e-09
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	3e-09
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	3e-09
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	9e-08
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	4e-09
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	9e-08
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	1e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-09
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-09
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	4e-09
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-08
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	5e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	6e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	9e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	7e-04
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	5e-09
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	6e-08
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	9e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-06
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	1e-08
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-08
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	3e-06
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	2e-08
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	2e-05
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	5e-05
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-08
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-06
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	4e-06
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	5e-08
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	8e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-06
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	4e-05
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	7e-08
3k9i_A	117	BH0479 protein; putative protein binding protein,	9e-08
3k9i_A	117	BH0479 protein; putative protein binding protein,	3e-04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	2e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	3e-07
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-06
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07
2kat_A	115	Uncharacterized protein; NESG, structure, structur	9e-07
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	2e-06
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	4e-04
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	6e-06
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	3e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	9e-06
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	2e-05
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	2e-05
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	1e-04
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	2e-05
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	2e-05
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	3e-05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	6e-05
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	1e-04
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	2e-04
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	3e-04
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	4e-04
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	4e-04
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	7e-04
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	7e-04

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score =  249 bits (638), Expect = 9e-79
 Identities = 88/385 (22%), Positives = 166/385 (43%), Gaps = 26/385 (6%)

Query: 1   MGIGTMTREEKAVIYVTSQYLT-PSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIK 59
           +G+ TM R E   +    +Y    +  +P +     + FE+EL+           G + +
Sbjct: 92  IGVATMKRGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKGEDLFEDGGIIRR 151

Query: 60  RRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL--- 116
            + +      P +     + + +H +G       ++F       D + + F+ GEG    
Sbjct: 152 TKRKGEGYSNPNEG----ATVEIHLEGRC---GGRMF-------DCRDVAFTVGEGEDHD 197

Query: 117 VPEGFEMCVRLMLPGEIALVTCPPDYAY-DKFLRPANVPEGAHIQWEIELLGFEKPKDWT 175
           +P G +  +  M   E  ++   P Y + +       +   A + +E+ L  FEK K+  
Sbjct: 198 IPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESW 257

Query: 176 GLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRN 235
            +     +++A  ++  G   FK GK+  A  +Y K++          ++E K       
Sbjct: 258 EMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLL 317

Query: 236 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMM 295
              LN+A C LKL E  K++E C+K L  + A+ KGLYRRG A + + EFE A+ DFE +
Sbjct: 318 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKV 377

Query: 296 MKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPGEISEVGIENQGEDQAAGK 355
           ++V+  ++  A   +S  +K+ +E   + R+ +  +F K   + ++       E   A  
Sbjct: 378 LEVNPQNK-AARLQISMCQKKAKEHNERDRRIYANMFKKFAEQDAKE------EANKAMG 430

Query: 356 NENDDSEQESDGDEAQEFHEAAAEA 380
            +  +      G ++Q   E   E 
Sbjct: 431 KKTSEGVTNEKGTDSQAMEEEKPEG 455

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 75.5 bits (185), Expect = 5e-15
 Identities = 41/125 (32%), Positives = 58/125 (46%), Gaps = 9/125 (7%)

Query: 50  DMLGDGRLIKRRIRDGKG-EFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPL 108
               D  ++K   R G G E PM        + VHYKG L N   K F  +   +  +P 
Sbjct: 26  TSKKDRGVLKIVKRVGNGEETPMI----GDKVYVHYKGKLSNG--KKFDSSH--DRNEPF 77

Query: 109 EFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF 168
            FS G+G V + +++ V  M  GEI  + C P+YAY        +P  A + +EIELL F
Sbjct: 78  VFSLGKGQVIKAWDIGVATMKRGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 137

Query: 169 EKPKD 173
           +    
Sbjct: 138 KGEDL 142

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score =  242 bits (620), Expect = 2e-77
 Identities = 85/331 (25%), Positives = 165/331 (49%), Gaps = 18/331 (5%)

Query: 50  DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 109
            M  DG +I+R    G+G      P   +++ V  +G   ++   +F       D + L 
Sbjct: 20  HMEEDGGIIRRIQTRGEGY---AKPNEGAIVEVALEGYYKDK---LF-------DQRELR 66

Query: 110 FSSGEGL---VPEGFEMCVRLMLPGEIALVTCPPDYAYDKF-LRPANVPEGAHIQWEIEL 165
           F  GEG    +P G E  ++ M  GE ++V   P YA+         +P  A +++E+ L
Sbjct: 67  FEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHL 126

Query: 166 LGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDE 225
             FEK K+   ++ +  ++++  ++  G   FKEGK++ A  +Y+K++    + +   +E
Sbjct: 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNE 186

Query: 226 EGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF 285
           E +     R   HLN+A C LKL     +IE+CNK L+ +  + KGL RRG A++A+ +F
Sbjct: 187 EAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDF 246

Query: 286 EEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPGEISEVGIE 345
           E A+ DF+ ++++  ++   A   L+  +++ +   ++ +K +  +F++   E ++   E
Sbjct: 247 ELARADFQKVLQLYPNN-KAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKAE 305

Query: 346 NQGEDQAAGKNENDDSEQESDGDEAQEFHEA 376
               D        ++ +  + G ++Q   EA
Sbjct: 306 ASSGDHPTDTEMKEEQKSNTAGSQSQVETEA 336

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score =  225 bits (574), Expect = 9e-71
 Identities = 92/340 (27%), Positives = 153/340 (45%), Gaps = 26/340 (7%)

Query: 5   TMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRD 64
           T T ++++ I      +  S          +V  E E+           D ++ K+ I++
Sbjct: 9   TQTHDQESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEV----------LDEKVSKQIIKE 58

Query: 65  GKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG-EGLVPEGFEM 123
           G G  P       S   +HY+    N +   F DT   ++ QP+E   G E     G  +
Sbjct: 59  GHGSKPSKY----STCFLHYRAWTKNSQH-KFEDTW--HEQQPIELVLGKEKKELAGLAI 111

Query: 124 CVRLMLPGEIALVTCPPDYAYDKFLRPA--NVPEGAHIQWEIELLGFEKPK---DWTGLS 178
            V  M  GE ALV    + AY K    +  NVP  A + +E+E++GF++ K     + ++
Sbjct: 112 GVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMT 171

Query: 179 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLR--DFNHVNPQDDEEGKVFVGKRNL 236
            +  +  A++ ++ GN LFKE K E A  +YE  +     + +     +   + +  +N 
Sbjct: 172 VEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNP 231

Query: 237 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 296
            HLN+AACL+KL    ++I  CN VL     + K L+RRG A   LG+ + A+ DF    
Sbjct: 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQ 291

Query: 297 KVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKP 336
           K            L  L +Q + +  K ++ +KG+F  K 
Sbjct: 292 KYAPDD-KAIRRELRALAEQEKALYQKQKEMYKGIFKGKD 330

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score =  159 bits (404), Expect = 4e-47
 Identities = 48/175 (27%), Positives = 79/175 (45%), Gaps = 3/175 (1%)

Query: 164 ELLGFEKPKDWTG-LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQ 222
           E L F+  K      + +  +  A  I+  GN  FK+ +   A  KY++ L  F H    
Sbjct: 15  ENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEW 74

Query: 223 DDEEGKVFVGK-RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA 281
           DD+             +LN+A C  K  +  K+I+  +KVL  +  +VK LY+ G+A M 
Sbjct: 75  DDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMY 134

Query: 282 LGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKP 336
            G  EEA+ +      ++ ++  D   +      + +E   K +  F G+FDK P
Sbjct: 135 FGFLEEAKENLYKAASLNPNN-LDIRNSYELCVNKLKEARKKDKLTFGGMFDKGP 188

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score =  149 bits (379), Expect = 6e-44
 Identities = 33/158 (20%), Positives = 73/158 (46%), Gaps = 3/158 (1%)

Query: 178 SFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNP---QDDEEGKVFVGKR 234
           + D  +   E +R  GN LF +  ++ A   Y   L   + +       + E      K 
Sbjct: 3   AEDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKN 62

Query: 235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEM 294
             L+ N++ C L +G+  ++ E  ++VL     + K L+RR  A +A  + +EA+ D ++
Sbjct: 63  IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKL 122

Query: 295 MMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLF 332
           +++   ++       +  + ++R E ++ +R  +  +F
Sbjct: 123 LLRNHPAAASVVAREMKIVTERRAEKKADSRVTYSKMF 160

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score =  135 bits (342), Expect = 2e-36
 Identities = 40/156 (25%), Positives = 76/156 (48%), Gaps = 2/156 (1%)

Query: 178 SFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEE-GKVFVGKRNL 236
             D I+  +E ++  GN  FK   +E+A  KY KVLR         ++  G         
Sbjct: 215 DVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALS 274

Query: 237 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 296
             LN+ AC LK+ + + ++++C + L+ +P++ K LYRR   +  L E+++A  D +   
Sbjct: 275 CVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQ 334

Query: 297 KVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLF 332
           ++         A L K+K++ +  + K +  +  +F
Sbjct: 335 EIAPED-KAIQAELLKVKQKIKAQKDKEKAAYAKMF 369

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356

 Score =  128 bits (323), Expect = 9e-34
 Identities = 49/178 (27%), Positives = 84/178 (47%), Gaps = 14/178 (7%)

Query: 1   MGIGTMTREEKAVIYVTSQY------LTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGD 54
             + TM + EK ++ V  QY         +     V     +  ++ELV    V ++  D
Sbjct: 184 KAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDD 243

Query: 55  GRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGE 114
            +++K+ +++ +     + P   +++ V   G L +    VF     D + +P EF + E
Sbjct: 244 KKILKKVLKEXE---GYERPNEGAVVTVKITGKLQD--GTVFLKKGHD-EQEPFEFKTDE 297

Query: 115 GLVPEGFEMCVRLMLPGEIALVTCPPDYAYDK--FLRPANVPEGAHIQWEIELLGFEK 170
             V EG +  V  M  GE+ALVT PP+YAY      + A VP  + + +E+EL+ F K
Sbjct: 298 EAVIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFVK 355

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356

 Score = 89.9 bits (223), Expect = 4e-20
 Identities = 50/223 (22%), Positives = 88/223 (39%), Gaps = 26/223 (11%)

Query: 1   MGIGTMTREEKAVIYVTSQY---LTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRL 57
            GI TM + E A+  +  +     + SP  P +     + F+VEL+    VRD+  DG +
Sbjct: 72  QGIKTMKKGENALFTIPPELAYGESGSP--PTIPANATLQFDVELLSWTSVRDIAKDGGI 129

Query: 58  IKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLV 117
            K+ +++G      + P     + V Y+  L +    V   +        +EF+  +G +
Sbjct: 130 FKKILKEGDK---WENPKDPDEVFVKYEARLEDG--TVVSKSE------GVEFTVKDGHL 178

Query: 118 PEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPAN-----VPEGAHIQWEIELLGFEKPK 172
                  V+ M  GE  L+   P Y + +  RPA      VP  A +  ++EL+ ++   
Sbjct: 179 CPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVT 238

Query: 173 DWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRD 215
           +      D  + +       G     EG       K    L+D
Sbjct: 239 EIG---DDKKILKKVLKEXEGYERPNEGAV--VTVKITGKLQD 276

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356

 Score = 84.5 bits (209), Expect = 3e-18
 Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 12/164 (7%)

Query: 52  LGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFS 111
           +G   L K+ +++G+G    D P     + VHY G LL+   K F  +R  +     +F 
Sbjct: 8   IGKQGLKKKLLKEGEGW---DTPEVGDEVEVHYTGTLLD--GKKFDSSR--DRDDTFKFK 60

Query: 112 SGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKP 171
            G+G V +G++  ++ M  GE AL T PP+ AY +   P  +P  A +Q+++ELL +   
Sbjct: 61  LGQGQVIKGWDQGIKTMKKGENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSV 120

Query: 172 KDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRD 215
           +D             +KI   G++       +    KYE  L D
Sbjct: 121 RDI-----AKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLED 159

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score =  107 bits (268), Expect = 4e-28
 Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 13/133 (9%)

Query: 183 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVA 242
               E++R  GN LFK G +  A A Y + L     ++    ++          LH N A
Sbjct: 25  ASSVEQLRKEGNELFKCGDYGGALAAYTQALG----LDATPQDQAV--------LHRNRA 72

Query: 243 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 302
           AC LKL +  K+    +K ++ +   VK LYRR  A   LG  ++A  D +  + ++  +
Sbjct: 73  ACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN 132

Query: 303 EPDATAALSKLKK 315
           +     AL  +  
Sbjct: 133 K-VFQEALRNISG 144

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 99.7 bits (249), Expect = 1e-25
 Identities = 32/146 (21%), Positives = 60/146 (41%), Gaps = 19/146 (13%)

Query: 184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 243
             A++++  GNRLF   K+  A A Y + +      NP              + + N A 
Sbjct: 7   PSAQELKEQGNRLFVGRKYPEAAACYGRAIT----RNPLVA-----------VYYTNRAL 51

Query: 244 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 303
           C LK+ +  +++  C + L+ +   VK  +  G   + +  ++EA  + +    + K   
Sbjct: 52  CYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 111

Query: 304 P----DATAALSKLKKQRQEVESKAR 325
                D  +AL   KK+R     + R
Sbjct: 112 LNFGDDIPSALRIAKKKRWNSIEERR 137

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 135

 Score = 97.8 bits (244), Expect = 9e-25
 Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 11/130 (8%)

Query: 50  DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 109
           D+LG+G L K+ +  G        P+   ++ VH +  L N        TRV      L 
Sbjct: 12  DILGNGLLRKKTLVPGPP--GSSRPVKGQVVTVHLQTSLEN-------GTRVQE-EPELV 61

Query: 110 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAY-DKFLRPANVPEGAHIQWEIELLGF 168
           F+ G+  V +  ++ V LM  GE A+VT    Y Y  +  R   +P  A +  E+ L   
Sbjct: 62  FTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTA 121

Query: 169 EKPKDWTGLS 178
               D     
Sbjct: 122 VDRPDLEMSG 131

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 96.1 bits (240), Expect = 2e-24
 Identities = 30/134 (22%), Positives = 61/134 (45%), Gaps = 16/134 (11%)

Query: 183 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVA 242
           M++  +++  GN+    G  + A   Y + ++    ++P +           ++L+ N +
Sbjct: 1   MEQVNELKEKGNKALSVGNIDDALQCYSEAIK----LDPHN-----------HVLYSNRS 45

Query: 243 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 302
           A   K G+ +K+ E   K +D  P   KG  R+  A   L  FEEA+R +E  +K + ++
Sbjct: 46  AAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN 105

Query: 303 EPDATAALSKLKKQ 316
                  L  ++ +
Sbjct: 106 P-QLKEGLQNMEAR 118

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 95.0 bits (237), Expect = 7e-24
 Identities = 28/139 (20%), Positives = 58/139 (41%), Gaps = 17/139 (12%)

Query: 185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC 244
           +AE+ R+ G   F +  +  A   Y ++++      P+D              + N AA 
Sbjct: 3   KAEEARLEGKEYFTKSDWPNAVKAYTEMIK----RAPED-----------ARGYSNRAAA 47

Query: 245 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP 304
           L KL    ++I  CNK ++ +P  V+   R+  A +A+ E+  A    +     D   E 
Sbjct: 48  LAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDA--EV 105

Query: 305 DATAALSKLKKQRQEVESK 323
           +  ++  ++ +   +   +
Sbjct: 106 NNGSSAREIDQLYYKASQQ 124

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 99.2 bits (247), Expect = 9e-24
 Identities = 40/223 (17%), Positives = 80/223 (35%), Gaps = 24/223 (10%)

Query: 184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 243
             A++++  GNRLF   K+  A A Y + +      NP              + + N A 
Sbjct: 2   PSAQELKEQGNRLFVGRKYPEAAACYGRAIT----RNPLVA-----------VYYTNRAL 46

Query: 244 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK--- 300
           C LK+ +  +++  C + L+ +   VK  +  G   + +  ++EA  + +    + K   
Sbjct: 47  CYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 106

Query: 301 -SSEPDATAALSKLKKQRQEVESKARKQFKG-----LFDKKPGEISEVGIENQGEDQAAG 354
            +   D  +AL   KK+R     + R   +      L      E      E Q   +   
Sbjct: 107 LNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHE 166

Query: 355 KNENDDSEQESDGDEAQEFHEAAAEAPRKGCSTAFGLPVEDYF 397
            + +  ++Q     +  ++     E   +         + DY 
Sbjct: 167 DDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRKKRDIPDYL 209

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 93.8 bits (234), Expect = 2e-23
 Identities = 33/132 (25%), Positives = 68/132 (51%), Gaps = 16/132 (12%)

Query: 184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 243
           + A++ +  GN  FK+G +  A   Y + ++     +P++            +L+ N AA
Sbjct: 11  ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK----RDPEN-----------AILYSNRAA 55

Query: 244 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 303
           CL KL E +++++ C+  +  +   +KG  R+    +A+ E+ +AQR +E  ++VD S+E
Sbjct: 56  CLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE 115

Query: 304 PDATAALSKLKK 315
            +A   +    +
Sbjct: 116 -EAREGVRNCLR 126

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 93.6 bits (233), Expect = 7e-23
 Identities = 31/142 (21%), Positives = 62/142 (43%), Gaps = 16/142 (11%)

Query: 183 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVA 242
           +  AE+++   N  FK   +E A   Y + +     +NP +            + + N +
Sbjct: 10  LKRAEELKTQANDYFKAKDYENAIKFYSQAIE----LNPSNA-----------IYYGNRS 54

Query: 243 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 302
              L+      ++    + ++ +  ++KG YRR  + MALG+F  A RD+E ++KV    
Sbjct: 55  LAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 114

Query: 303 EPDATAALSKLKKQRQEVESKA 324
           + DA     +  K  ++   + 
Sbjct: 115 K-DAKMKYQECNKIVKQKAFER 135

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 91.5 bits (228), Expect = 1e-22
 Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 16/134 (11%)

Query: 184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 243
           D A  ++  GN  F++G +  A   Y + ++     NP+D             L+ N AA
Sbjct: 14  DLALMVKNKGNECFQKGDYPQAMKHYTEAIK----RNPKD-----------AKLYSNRAA 58

Query: 244 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 303
           C  KL E + +++ C + +   P  +KG  R+  A  A+ ++ +A   ++  + +D S +
Sbjct: 59  CYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCK 118

Query: 304 PDATAALSKLKKQR 317
            +A     +    +
Sbjct: 119 -EAADGYQRCMMAQ 131

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Length = 118

 Score = 89.2 bits (222), Expect = 8e-22
 Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 10/120 (8%)

Query: 50  DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 109
           D+LG+G L K+ +  G        P+   ++ VH +  L N        TRV  +   L 
Sbjct: 8   DILGNGLLRKKTLVPGPP--GSSRPVKGQVVTVHLQTSLEN-------GTRVQ-EEPELV 57

Query: 110 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 169
           F+ G+  V +  ++ V LM  GE A+VT    Y Y    R   +P  A +  E+ L    
Sbjct: 58  FTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGRSPYIPPHAALCLEVTLKTAV 117

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 89.2 bits (222), Expect = 1e-21
 Identities = 35/143 (24%), Positives = 59/143 (41%), Gaps = 23/143 (16%)

Query: 184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 243
            EAE+++  GN   K   FE A   Y K +     +NP +                N AA
Sbjct: 10  AEAERLKTEGNEQMKVENFEAAVHFYGKAIE----LNPANAV-----------YFCNRAA 54

Query: 244 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 303
              KLG    +++ C + +  +PA+ K   R G+A  +L +  EA   ++  +++D  +E
Sbjct: 55  AYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNE 114

Query: 304 PDATAALSKLKKQRQEVESKARK 326
                     K   +  E K R+
Sbjct: 115 --------TYKSNLKIAELKLRE 129

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 89.0 bits (221), Expect = 3e-21
 Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 16/145 (11%)

Query: 184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 243
            E++K++  GN      ++  A   Y + L     + P +            +   N AA
Sbjct: 9   PESDKLKSEGNAAMARKEYSKAIDLYTQALS----IAPAN-----------PIYLSNRAA 53

Query: 244 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 303
                G+  K+ E        +P + K   R G+A   + +++ A+  +E  ++ + +  
Sbjct: 54  AYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGG 113

Query: 304 PDAT-AALSKLKKQRQEVESKARKQ 327
            DA    L   K++ +E    A   
Sbjct: 114 SDAMKRGLETTKRKIEEANRGAEPP 138

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Length = 157

 Score = 86.7 bits (215), Expect = 1e-20
 Identities = 34/127 (26%), Positives = 53/127 (41%), Gaps = 12/127 (9%)

Query: 50  DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 109
           D+LG+G L K+ +  G        P+   ++ VH +  L N        TRV      L 
Sbjct: 38  DILGNGLLRKKTLVPGPP--GSSRPVKGQVVTVHLQTSLEN-------GTRVQE-EPELV 87

Query: 110 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAY-DKFLRPANVPEGAHIQWEIELLGF 168
           F+ G+  V +  ++ V LM  GE A+VT    Y Y  +  R   +P  A +  E+ L   
Sbjct: 88  FTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTA 147

Query: 169 -EKPKDW 174
            +     
Sbjct: 148 VDLEHHH 154

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 89.6 bits (223), Expect = 5e-20
 Identities = 30/155 (19%), Positives = 61/155 (39%), Gaps = 20/155 (12%)

Query: 170 KPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKV 229
                   +    + +  K+  +   L ++G++  A +KYE V++      P   E    
Sbjct: 218 DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK----TEPSVAEY--- 270

Query: 230 FVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQ 289
                      +  C  K  +  ++I  C++VL   P +V  L  R  AY+    ++EA 
Sbjct: 271 ----TVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAI 326

Query: 290 RDFEMMMKVDKSSEPDATA------ALSKLKKQRQ 318
           +D+E   + +++   D         A   LK+ ++
Sbjct: 327 QDYEAAQEHNEN---DQQIREGLEKAQRLLKQSQK 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 75.4 bits (186), Expect = 3e-15
 Identities = 25/141 (17%), Positives = 56/141 (39%), Gaps = 16/141 (11%)

Query: 185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC 244
           + EK    G +L   G+   A +++   +      +P +              +   A  
Sbjct: 2   DVEKHLELGKKLLAAGQLADALSQFHAAVD----GDPDNYI-----------AYYRRATV 46

Query: 245 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP 304
            L +G+ + ++    KV+           +RG   +  G+ +EA+ DF+ ++K + S   
Sbjct: 47  FLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE-Q 105

Query: 305 DATAALSKLKKQRQEVESKAR 325
           +   A S+L K  +    +++
Sbjct: 106 EEKEAESQLVKADEMQRLRSQ 126

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 29/152 (19%), Positives = 50/152 (32%), Gaps = 19/152 (12%)

Query: 174 WTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGK 233
               S     DE +++R      F    +  A    +K+L     V   D E        
Sbjct: 108 KEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILE----VCVWDAE-------- 155

Query: 234 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
              L    A C +K GE RK+I            + +  Y+    Y  LG+ E +  +  
Sbjct: 156 ---LRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVR 212

Query: 294 MMMKVDKSSEPDATAALSKLKKQRQEVESKAR 325
             +K+D     D     +  K+ ++  +    
Sbjct: 213 ECLKLD----QDHKRCFAHYKQVKKLNKLIES 240

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 18/137 (13%), Positives = 41/137 (29%), Gaps = 31/137 (22%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
                KEG+   A +  +   +    +   + E               ++    +LG+  
Sbjct: 161 AECFIKEGEPRKAISDLKAASK----LKSDNTE-----------AFYKISTLYYQLGDHE 205

Query: 253 KSIEACNKVLDANPAH------------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 300
            S+    + L  +  H            +  L       +  G + +A   +E +MK + 
Sbjct: 206 LSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE- 264

Query: 301 SSEPDATAALSKLKKQR 317
              P       + K++ 
Sbjct: 265 ---PSVAEYTVRSKERI 278

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 83.5 bits (207), Expect = 1e-19
 Identities = 25/139 (17%), Positives = 51/139 (36%), Gaps = 24/139 (17%)

Query: 184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 243
           D A   +  GN  +K+  FE A   Y+K +     ++P +              + N AA
Sbjct: 6   DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIE----LDPSNIT-----------FYNNKAA 50

Query: 244 CLLKLGECRKSIEACNKVLDANPAH-------VKGLYRRGMAYMALGEFEEAQRDFEMMM 296
              +  +  + ++ C K ++             K + R G A+    +   A + F   +
Sbjct: 51  VYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSL 110

Query: 297 KVDKSSEPDATAALSKLKK 315
              +   P+    + +L+K
Sbjct: 111 SEFRD--PELVKKVKELEK 127

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 83.1 bits (206), Expect = 2e-19
 Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 24/144 (16%)

Query: 185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC 244
           +A K +  GN  +K+  F+ A   Y+K       ++P +                N AA 
Sbjct: 3   QALKEKELGNDAYKKKDFDTALKHYDKAKE----LDPTN-----------MTYITNQAAV 47

Query: 245 LLKLGECRKSIEACNKVLDANPAH-------VKGLYRRGMAYMALGEFEEAQRDFEMMMK 297
             + G+  K  E C K ++    +        K   R G +Y    ++++A   +   + 
Sbjct: 48  YFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA 107

Query: 298 VDKSSEPDATAALSKLKKQRQEVE 321
             ++  PD      + +K  +E E
Sbjct: 108 EHRT--PDVLKKCQQAEKILKEQE 129

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 88.6 bits (220), Expect = 2e-19
 Identities = 29/151 (19%), Positives = 64/151 (42%), Gaps = 12/151 (7%)

Query: 181 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLN 240
             + +  K+  +   L ++G++  A +KYE V++      P   E               
Sbjct: 252 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMK----TEPSIAEY-------TVRSKER 300

Query: 241 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 300
           +  C  K  +  ++I  C++VL   P +V  L  R  AY+    ++EA +D+E   + ++
Sbjct: 301 ICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE 360

Query: 301 SSEPDATAALSKLKKQRQEVESKARKQFKGL 331
           +        L K ++  ++ + +   +  G+
Sbjct: 361 ND-QQIREGLEKAQRLLKQSQKRDYYKILGV 390

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 80.1 bits (198), Expect = 1e-16
 Identities = 26/140 (18%), Positives = 55/140 (39%), Gaps = 16/140 (11%)

Query: 179 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLH 238
           +   M + EK    G +L   G+   A +++   +      +P +              +
Sbjct: 19  YFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVD----GDPDNYI-----------AY 63

Query: 239 LNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 298
              A   L +G+ + ++    KV+           +RG   +  G+ +EA+ DF+ ++K 
Sbjct: 64  YRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS 123

Query: 299 DKSSEPDATAALSKLKKQRQ 318
           + S   +   A S+L K  +
Sbjct: 124 NPSE-NEEKEAQSQLIKSDE 142

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 72.4 bits (178), Expect = 5e-14
 Identities = 31/155 (20%), Positives = 54/155 (34%), Gaps = 19/155 (12%)

Query: 171 PKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVF 230
            ++    S     DE +++R      F  G +  A A  +K+L     V   D E     
Sbjct: 128 NEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILE----VCVWDAE----- 178

Query: 231 VGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQR 290
                 L    A C +K GE RK+I            + +  Y+    Y  LG+ E +  
Sbjct: 179 ------LRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLS 232

Query: 291 DFEMMMKVDKSSEPDATAALSKLKKQRQEVESKAR 325
           +    +K+D     D     +  K+ ++  +    
Sbjct: 233 EVRECLKLD----QDHKRCFAHYKQVKKLNKLIES 263

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 24/121 (19%), Positives = 44/121 (36%), Gaps = 30/121 (24%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
           G  L  E  +  + A  EK                          HL +   LL  G+  
Sbjct: 10  GVDLGTENLYFQSMADVEK--------------------------HLELGKKLLAAGQLA 43

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 312
            ++   +  +D +P +    YRR   ++A+G+ + A  D   ++++      D TAA  +
Sbjct: 44  DALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK----MDFTAARLQ 99

Query: 313 L 313
            
Sbjct: 100 R 100

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280

 Score = 86.5 bits (214), Expect = 3e-19
 Identities = 45/182 (24%), Positives = 71/182 (39%), Gaps = 25/182 (13%)

Query: 1   MGIGTMTREEKAVIYVTSQY---LTPSPLMPVVEGCEEVHFEVELVHLIQVRDM--LGDG 55
           + I TM   E   I    +Y      SP  P +     + FEVEL              G
Sbjct: 112 IAIATMKVGEVCHITCKPEYAYGSAGSP--PKIPPNATLVFEVELFEFKGEDLTEEEDGG 169

Query: 56  RLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEG 115
            + + + R      P +     +++ V  +G   +   K+F       D + L F  GEG
Sbjct: 170 IIRRIQTRGEGYAKPNE----GAIVEVALEGYYKD---KLF-------DQRELRFEIGEG 215

Query: 116 LV---PEGFEMCVRLMLPGEIALVTCPPDYAY-DKFLRPANVPEGAHIQWEIELLGFEKP 171
                P G E  ++ M  GE ++V   P YA+         +P  A +++E+ L  FEK 
Sbjct: 216 ENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKA 275

Query: 172 KD 173
           K+
Sbjct: 276 KE 277

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280

 Score = 76.4 bits (188), Expect = 6e-16
 Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 7/136 (5%)

Query: 53  GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSS 112
            D  ++K   R+G G    + P+    + VHY G LL+     F  +   +      F  
Sbjct: 49  QDEGVLKVIKREGTGT---EMPMIGDRVFVHYTGWLLD--GTKFDSSL--DRKDKFSFDL 101

Query: 113 GEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPK 172
           G+G V + +++ +  M  GE+  +TC P+YAY     P  +P  A + +E+EL  F+   
Sbjct: 102 GKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKGED 161

Query: 173 DWTGLSFDGIMDEAEK 188
                    I     +
Sbjct: 162 LTEEEDGGIIRRIQTR 177

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Length = 134

 Score = 78.8 bits (195), Expect = 6e-18
 Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 7/119 (5%)

Query: 50  DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 109
           D+ GD  ++K  IR+G G+        D+ + V Y G L + ++   +D+       P  
Sbjct: 21  DISGDRGVLKDVIREGAGDLVAP----DASVLVKYSGYLEHMDRP--FDSNYF-RKTPRL 73

Query: 110 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF 168
              GE +   G E+ +  M  GE+A     P+YAY     P  +P    + +EIELL F
Sbjct: 74  MKLGEDITLWGMELGLLSMRRGELARFLFKPNYAYGTLGCPPLIPPNTTVLFEIELLDF 132

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 84.0 bits (208), Expect = 9e-18
 Identities = 43/191 (22%), Positives = 82/191 (42%), Gaps = 20/191 (10%)

Query: 183 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVA 242
           +  AE+++   N  FK   +E A   Y + +     +NP +            + + N +
Sbjct: 3   LKRAEELKTQANDYFKAKDYENAIKFYSQAIE----LNPSN-----------AIYYGNRS 47

Query: 243 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 302
              L+      ++    + ++ +  ++KG YRR  + MALG+F  A RD+E ++KV    
Sbjct: 48  LAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK--- 104

Query: 303 EPDATAALSKLKKQRQEVESKARKQFKGLFDKKPGEISEVGIENQG-EDQAAGKNENDDS 361
            P    A  K ++  + V+ KA ++     + K   +  + IE+   ED+ +G    D  
Sbjct: 105 -PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGK 163

Query: 362 EQESDGDEAQE 372
              S   E  +
Sbjct: 164 VTISFMKELMQ 174

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 76.6 bits (189), Expect = 2e-17
 Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 21/126 (16%)

Query: 183 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVA 242
           M + EK +  GN LFK+G +  A   Y++++       PQ+            + + N A
Sbjct: 1   MSQFEKQKEQGNSLFKQGLYREAVHCYDQLIT----AQPQN-----------PVGYSNKA 45

Query: 243 ACLLKLGECRKSIEACNKVLDANPAHVKGL------YRRGMAYMALGEFEEAQRDFEMMM 296
             L+KLGE  ++I+ C + L                YR  +A  A+G  +    + + + 
Sbjct: 46  MALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELP 105

Query: 297 KVDKSS 302
           +    S
Sbjct: 106 EGYDRS 111

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Length = 135

 Score = 76.5 bits (189), Expect = 3e-17
 Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 8/131 (6%)

Query: 53  GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSS 112
            DG ++K   ++G+G      P   + + VHY G L N     F D+  D  G    F+ 
Sbjct: 12  KDGGVLKLIKKEGQGV---VKPTTGTTVKVHYVGTLEN--GTKF-DSSRDR-GDQFSFNL 64

Query: 113 GEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPK 172
           G G V +G+++ V  M  GE+A  T   DY Y     P  +P GA + +E+EL  +   +
Sbjct: 65  GRGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEW-SAE 123

Query: 173 DWTGLSFDGIM 183
           D +      I+
Sbjct: 124 DISPDRDGTIL 134

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Length = 128

 Score = 76.1 bits (188), Expect = 4e-17
 Identities = 42/118 (35%), Positives = 60/118 (50%), Gaps = 7/118 (5%)

Query: 53  GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSS 112
            D  ++K   R G GE   + P+    + VHYKG L N   K F D+  D   +P  FS 
Sbjct: 17  KDRGVLKIVKRVGNGE---ETPMIGDKVYVHYKGKLSN--GKKF-DSSHD-RNEPFVFSL 69

Query: 113 GEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEK 170
           G+G V + +++ V  M  GEI  + C P+YAY        +P  A + +EIELL F+ 
Sbjct: 70  GKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKG 127

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Length = 180

 Score = 77.2 bits (190), Expect = 8e-17
 Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 13/140 (9%)

Query: 53  GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSS 112
            D ++ K+ I++G G  P       S   +HY+    N + K  ++       QP+E   
Sbjct: 47  LDEKVSKQIIKEGHGSKPSK----YSTCFLHYRAWTKNSQHK--FEDTWHE-QQPIELVL 99

Query: 113 G-EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDK--FLRPANVPEGAHIQWEIELLGFE 169
           G E     G  + V  M  GE ALV    + AY K       NVP  A + +E+E++GF+
Sbjct: 100 GKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFD 159

Query: 170 KPKDWTGLSFDGIMDEAEKI 189
           + K+         M   E+I
Sbjct: 160 ETKE---GKARSDMTVEERI 176

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Length = 129

 Score = 74.2 bits (183), Expect = 2e-16
 Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 4/123 (3%)

Query: 50  DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 109
           ++  DG +IK  ++ G      + P   + + VHY G L +  K   +D+  D    P +
Sbjct: 11  ELTADGGVIKTILKKGDEG-EENIPKKGNEVTVHYVGKLESTGKV--FDSSFD-RNVPFK 66

Query: 110 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 169
           F   +G V +G+++CV  M   E  LV     Y Y       ++P  + + +EIELL F 
Sbjct: 67  FHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSFR 126

Query: 170 KPK 172
           + +
Sbjct: 127 ELE 129

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Length = 107

 Score = 73.4 bits (181), Expect = 2e-16
 Identities = 37/113 (32%), Positives = 51/113 (45%), Gaps = 7/113 (6%)

Query: 57  LIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL 116
           +    I  G G      P       VHY GML +   K F D+  D   +P +F  G+  
Sbjct: 2   VQVETISPGDGR---TFPKRGQTCVVHYTGMLED--GKKF-DSSRDR-NKPFKFMLGKQE 54

Query: 117 VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 169
           V  G+E  V  M  G+ A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 55  VIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 76.8 bits (190), Expect = 3e-16
 Identities = 28/138 (20%), Positives = 58/138 (42%), Gaps = 18/138 (13%)

Query: 184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 243
           ++AE+ R+ G   F +  +  A   Y ++++      P+D              + N AA
Sbjct: 137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIK----RAPEDAR-----------GYSNRAA 181

Query: 244 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 303
            L KL    ++I  CNK ++ +P  V+   R+  A +A+ E+  A    +     D    
Sbjct: 182 ALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEV- 240

Query: 304 PDATA--ALSKLKKQRQE 319
            + ++   + +L  +  +
Sbjct: 241 NNGSSAREIDQLYYKASQ 258

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 65.3 bits (160), Expect = 4e-12
 Identities = 18/109 (16%), Positives = 33/109 (30%), Gaps = 18/109 (16%)

Query: 185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC 244
           + EK    GN+ +K  +F+ A   Y K       ++                   N AA 
Sbjct: 6   DKEKAE--GNKFYKARQFDEAIEHYNKAWE----LHKDIT------------YLNNRAAA 47

Query: 245 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
             + GE   +I   N  ++              ++  +G       D +
Sbjct: 48  EYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLK 96

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 58.7 bits (143), Expect = 5e-10
 Identities = 21/102 (20%), Positives = 31/102 (30%), Gaps = 15/102 (14%)

Query: 192 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC 251
           T + L K    E    K E        VNP+  EE                       + 
Sbjct: 111 TADILTKLRNAEKELKKAEAEAY----VNPEKAEE-----------ARLEGKEYFTKSDW 155

Query: 252 RKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
             +++A  +++   P   +G   R  A   L  F EA  D  
Sbjct: 156 PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 197

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 56.0 bits (136), Expect = 4e-09
 Identities = 9/101 (8%), Positives = 30/101 (29%), Gaps = 16/101 (15%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
               +++G++E A +     +        +   +           +  ++    ++G   
Sbjct: 45  AAAEYEKGEYETAISTLNDAVE----QGREMRAD-----------YKVISKSFARIGNAY 89

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
             +    K ++     +   +R       L   E+  +  E
Sbjct: 90  HKLGDLKKTIEYYQKSLT-EHRTADILTKLRNAEKELKKAE 129

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 53.3 bits (129), Expect = 3e-08
 Identities = 21/130 (16%), Positives = 35/130 (26%), Gaps = 27/130 (20%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
                + G         +K +        +   E               A  L KL    
Sbjct: 79  SKSFARIGNAYHKLGDLKKTIEY----YQKSLTE------------HRTADILTKLRNAE 122

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPD-ATA--- 308
           K ++        NP   +     G  Y    ++  A + +  M+K      P+ A     
Sbjct: 123 KELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA----PEDARGYSN 178

Query: 309 ---ALSKLKK 315
              AL+KL  
Sbjct: 179 RAAALAKLMS 188

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 79.0 bits (195), Expect = 5e-16
 Identities = 34/192 (17%), Positives = 60/192 (31%), Gaps = 25/192 (13%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
           GN  F    F  A   Y+  +     ++P +              + N++AC +  G+  
Sbjct: 32  GNHFFTAKNFNEAIKYYQYAIE----LDPNEPV-----------FYSNISACYISTGDLE 76

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 312
           K IE   K L+  P H K L RR  A  +LG F +A  D  ++              L +
Sbjct: 77  KVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLER 136

Query: 313 LKK----QRQEVESKARKQFKGLFDKKPGEISEVGIENQGEDQAAGKNENDDSEQESDGD 368
                  +         +            ++       G   +  +  + +    S+ D
Sbjct: 137 NLNKQAMKVLNENLSKDEGRGSQVLPSNTSLA----SFFGIFDSHLEVSSVN--TSSNYD 190

Query: 369 EAQEFHEAAAEA 380
            A      A + 
Sbjct: 191 TAYALLSDALQR 202

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 64.0 bits (156), Expect = 3e-11
 Identities = 18/101 (17%), Positives = 39/101 (38%), Gaps = 16/101 (15%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
           G   F +     A+   ++ +     ++P  +             ++ +A  L      +
Sbjct: 250 GIFHFLKNNLLDAQVLLQESIN----LHPTPN------------SYIFLALTLADKENSQ 293

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
           +  +   K +D NP +    Y RG  Y  L +++ A+ DF+
Sbjct: 294 EFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ 334

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 61.3 bits (149), Expect = 2e-10
 Identities = 18/138 (13%), Positives = 46/138 (33%), Gaps = 12/138 (8%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDE----EGKVFVGKRNL-LHLNVAACLLK 247
              L   G F+ A  +Y+   R    +    ++     G +      L    +     L 
Sbjct: 385 AEILTDRGDFDTAIKQYDIAKR----LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLD 440

Query: 248 LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDAT 307
             +   +I+   K  + +P   +         + + + +EA   FE    + + +  +  
Sbjct: 441 EEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR-TMDEKL 499

Query: 308 AALS--KLKKQRQEVESK 323
            A +  +  K ++ + + 
Sbjct: 500 QATTFAEAAKIQKRLRAD 517

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 19/149 (12%), Positives = 48/149 (32%), Gaps = 19/149 (12%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
           G   F    ++ AK  ++K       +NP++              ++ +A  L K G+  
Sbjct: 317 GQMYFILQDYKNAKEDFQKAQS----LNPENVY-----------PYIQLACLLYKQGKFT 361

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 312
           +S    N+     P   +            G+F+ A + +++  +++             
Sbjct: 362 ESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE----EVQEKIHVG 417

Query: 313 LKKQRQEVESKARKQFKGLFDKKPGEISE 341
           +     +    AR+  +        + + 
Sbjct: 418 IGPLIGKATILARQSSQDPTQLDEEKFNA 446

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 56.7 bits (137), Expect = 6e-09
 Identities = 14/101 (13%), Positives = 31/101 (30%), Gaps = 15/101 (14%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
              L  +   +     ++K +     +NP+               + +       L + +
Sbjct: 283 ALTLADKENSQEFFKFFQKAVD----LNPEYPP-----------TYYHRGQMYFILQDYK 327

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
            + E   K    NP +V    +        G+F E++  F 
Sbjct: 328 NAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFN 368

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 22/185 (11%), Positives = 53/185 (28%), Gaps = 19/185 (10%)

Query: 200 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN 259
           G     +    ++      ++P   +          +   N            ++I+   
Sbjct: 1   GSHMNGEPDIAQLKG----LSPSQRQA-------YAVQLKNRGNHFFTAKNFNEAIKYYQ 49

Query: 260 KVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK----LKK 315
             ++ +P            Y++ G+ E+        +++     PD + AL +     + 
Sbjct: 50  YAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK----PDHSKALLRRASANES 105

Query: 316 QRQEVESKARKQFKGLFDKKPGEISEVGIENQGEDQAAGKNENDDSEQESDGDEAQEFHE 375
                ++        L     G   E  +E     QA      + S+ E  G +    + 
Sbjct: 106 LGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNT 165

Query: 376 AAAEA 380
           + A  
Sbjct: 166 SLASF 170

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 47.0 bits (112), Expect = 7e-06
 Identities = 11/128 (8%), Positives = 28/128 (21%), Gaps = 23/128 (17%)

Query: 194 NRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRK 253
           + +     ++ A A     L+       +        + K                    
Sbjct: 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTK-------------STDMYHS 227

Query: 254 SIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATA----- 308
            + A              L   G+ +       +AQ   +  + +     P   +     
Sbjct: 228 LLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH----PTPNSYIFLA 283

Query: 309 -ALSKLKK 315
             L+  + 
Sbjct: 284 LTLADKEN 291

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} PDB: 1pbk_A* Length = 119

 Score = 73.1 bits (180), Expect = 5e-16
 Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 7/121 (5%)

Query: 53  GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEK---KVFYDTRVDNDGQPLE 109
           G  +  K  ++ G      + P    ++   Y G L +       +   ++   + +PL 
Sbjct: 2   GPPKYTKSILKKGDKT---NFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLS 58

Query: 110 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANV-PEGAHIQWEIELLGF 168
           F  G G V  G++  +  M  GE A +   P++AY K  +P    P    + +E+EL+  
Sbjct: 59  FKVGVGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELVDI 118

Query: 169 E 169
           +
Sbjct: 119 D 119

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Length = 144

 Score = 73.5 bits (181), Expect = 5e-16
 Identities = 42/118 (35%), Positives = 60/118 (50%), Gaps = 7/118 (5%)

Query: 53  GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSS 112
            D  ++K   R G GE   + P+    + VHYKG L N   K F D+  D   +P  FS 
Sbjct: 33  KDRGVLKIVKRVGNGE---ETPMIGDKVYVHYKGKLSN--GKKF-DSSHDR-NEPFVFSL 85

Query: 113 GEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEK 170
           G+G V + +++ V  M  GEI  + C P+YAY        +P  A + +EIELL F+ 
Sbjct: 86  GKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKG 143

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 102

 Score = 71.8 bits (177), Expect = 7e-16
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 4/92 (4%)

Query: 82  VHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPD 141
           +HY G L +     F D+ +    QP  FS G G V +G++  +  M  GE   +  P +
Sbjct: 14  MHYTGKLED--GTEF-DSSLPQ-NQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSE 69

Query: 142 YAYDKFLRPANVPEGAHIQWEIELLGFEKPKD 173
             Y +   P  +P GA + +E+ELL  E+  +
Sbjct: 70  LGYGERGAPPKIPGGATLVFEVELLKIERRTE 101

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 77.1 bits (190), Expect = 2e-15
 Identities = 30/145 (20%), Positives = 53/145 (36%), Gaps = 17/145 (11%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
           GN+ F+  K++ A   Y   L     +                  + N++AC + +G+ +
Sbjct: 13  GNQFFRNKKYDDAIKYYNWALE----LKEDPV------------FYSNLSACYVSVGDLK 56

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 312
           K +E   K L+  P + K L RR  A   LG+F +A  D  ++      ++      L +
Sbjct: 57  KVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLER 116

Query: 313 -LKKQRQEVESKARKQFKGLFDKKP 336
            L KQ      +             
Sbjct: 117 NLNKQAMSKLKEKFGDIDTATATPT 141

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 65.1 bits (159), Expect = 1e-11
 Identities = 15/109 (13%), Positives = 37/109 (33%), Gaps = 18/109 (16%)

Query: 185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC 244
            + +    G   F +     A    +K +     + P+ +             ++ +A  
Sbjct: 238 ISLEHT--GIFKFLKNDPLGAHEDIKKAIE----LFPRVN------------SYIYMALI 279

Query: 245 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
           +    +  +     +K L  +  +    Y RG     L  +++A +DF+
Sbjct: 280 MADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFD 328

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 63.2 bits (154), Expect = 6e-11
 Identities = 18/133 (13%), Positives = 46/133 (34%), Gaps = 11/133 (8%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLH-LNVAACLLKLGEC 251
              L  +  F+ A  +Y+  +     +  + D    ++VG   L+    +      +   
Sbjct: 379 AEILTDKNDFDKALKQYDLAIE----LENKLDG---IYVGIAPLVGKATLLTRNPTVENF 431

Query: 252 RKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS 311
            ++     K    +P   +         +   + +EA   FE    + + +  +   A++
Sbjct: 432 IEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR-TMEEKLQAIT 490

Query: 312 --KLKKQRQEVES 322
             +  K +Q + S
Sbjct: 491 FAEAAKVQQRIRS 503

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 61.7 bits (150), Expect = 2e-10
 Identities = 11/142 (7%), Positives = 41/142 (28%), Gaps = 19/142 (13%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
           G   F    ++ A   ++K       ++P++              ++ +A    +  +  
Sbjct: 311 GQMNFILQNYDQAGKDFDKAKE----LDPENIFP-----------YIQLACLAYRENKFD 355

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 312
                 ++     P   +             +F++A + +++ ++++             
Sbjct: 356 DCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE----NKLDGIYVG 411

Query: 313 LKKQRQEVESKARKQFKGLFDK 334
           +     +     R      F +
Sbjct: 412 IAPLVGKATLLTRNPTVENFIE 433

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 57.1 bits (138), Expect = 4e-09
 Identities = 7/107 (6%), Positives = 31/107 (28%), Gaps = 15/107 (14%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
              +            ++K L+    ++  +             ++ +       L    
Sbjct: 277 ALIMADRNDSTEYYNYFDKALK----LDSNNSS-----------VYYHRGQMNFILQNYD 321

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 299
           ++ +  +K  + +P ++    +         +F++ +  F    +  
Sbjct: 322 QAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF 368

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 51.3 bits (123), Expect = 3e-07
 Identities = 15/102 (14%), Positives = 34/102 (33%), Gaps = 2/102 (1%)

Query: 198 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEA 257
               ++ A   + K  R F     +++E+ K+   K  +   +         +   + E 
Sbjct: 201 SPESYDKADESFTKAARLFEEQLDKNNEDEKLK-EKLAISLEHTGIFKFLKNDPLGAHED 259

Query: 258 CNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 299
             K ++  P  V       +      +  E    F+  +K+D
Sbjct: 260 IKKAIELFP-RVNSYIYMALIMADRNDSTEYYNYFDKALKLD 300

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 16/141 (11%), Positives = 33/141 (23%), Gaps = 14/141 (9%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
               F   K EL  A Y++       +        K              +         
Sbjct: 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPES---YDKADESFTKAARLFE 220

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATA---- 308
           + ++  N+           L   G+      +   A  D +  +++     P   +    
Sbjct: 221 EQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF----PRVNSYIYM 276

Query: 309 ALSKLKKQRQEVESKARKQFK 329
           AL    +       +    F 
Sbjct: 277 ALIMADRNDST---EYYNYFD 294

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 6/56 (10%), Positives = 18/56 (32%), Gaps = 1/56 (1%)

Query: 238 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
             +      +  +   +I+  N  L+     V         Y+++G+ ++      
Sbjct: 9   LKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVEMST 63

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Length = 113

 Score = 70.3 bits (173), Expect = 4e-15
 Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 7/114 (6%)

Query: 54  DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 113
           +G +   RI  G G      P    L+ +HY G L N   + F D+ VD  G P + + G
Sbjct: 5   EGNVKIDRISPGDGA---TFPKTGDLVTIHYTGTLEN--GQKF-DSSVDR-GSPFQCNIG 57

Query: 114 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLG 167
            G V +G+++ +  +  GE A +T P  YAY     P  +P  + + +++ELL 
Sbjct: 58  VGQVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFPGLIPPNSTLVFDVELLK 111

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 69.0 bits (169), Expect = 2e-14
 Identities = 19/143 (13%), Positives = 54/143 (37%), Gaps = 16/143 (11%)

Query: 184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 243
           D  E++   G   ++ GK++ A+  ++ +      ++  D               L + A
Sbjct: 16  DTLEQLYALGFNQYQAGKWDDAQKIFQALCM----LDHYDAR-----------YFLGLGA 60

Query: 244 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 303
           C   LG   +++++ +     +    +  +     ++ LG+ + A+  F     +  +  
Sbjct: 61  CRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ- 119

Query: 304 PDATAALSKLKKQRQEVESKARK 326
           P   A  ++     + V ++  +
Sbjct: 120 PAHEALAARAGAMLEAVTARKDR 142

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Length = 130

 Score = 67.7 bits (166), Expect = 4e-14
 Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 7/114 (6%)

Query: 54  DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 113
             +L K+ +  G G      P     + VHY G   +   K F D+     G+P +F+ G
Sbjct: 23  SAQLEKKVLTPGDGV---TKPQAGKKVTVHYDGRFPD--GKQF-DSSRSR-GKPFQFTLG 75

Query: 114 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLG 167
            G V +G++  V  M  GE AL T P   AY +   P  +P  A + +E+ELL 
Sbjct: 76  AGEVIKGWDQGVATMTLGEKALFTIPYQLAYGERGYPPVIPPKATLVFEVELLA 129

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 67.5 bits (165), Expect = 9e-14
 Identities = 14/133 (10%), Positives = 44/133 (33%), Gaps = 17/133 (12%)

Query: 184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 243
           D  + I       + +G+ E A+  +  +       +  + +             + +AA
Sbjct: 34  DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI----YDFYNVD-----------YIMGLAA 78

Query: 244 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 303
                 + +++ +               ++  G   + L    +A+  FE++++     +
Sbjct: 79  IYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138

Query: 304 --PDATAALSKLK 314
               A + L  ++
Sbjct: 139 LKIKAQSYLDAIQ 151

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Length = 125

 Score = 66.2 bits (162), Expect = 1e-13
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 82  VHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPD 141
           VHY+G L  +    F+ T   N+GQP+ F+ G     +G++  ++ M  GE   +  PP 
Sbjct: 37  VHYEGYLEKDGSL-FHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEKRKLIIPPA 95

Query: 142 YAYDKFLRPANVPEGAHIQWEIELLGFEKP 171
             Y K      +P  + + + I+LL     
Sbjct: 96  LGYGK-EGKGKIPPESTLIFNIDLLEIRNG 124

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 66.7 bits (163), Expect = 5e-13
 Identities = 19/138 (13%), Positives = 46/138 (33%), Gaps = 2/138 (1%)

Query: 193 GNRLFKEGKFELAKAKYEKVLR-DFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC 251
            +   + G+   A + + + +  + +                 + L   +A    K    
Sbjct: 11  VSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNY 70

Query: 252 RKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS 311
            K+     ++L   P +V  L       +  G+ ++A R +E +++++  +   A   L 
Sbjct: 71  DKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN-LAANIFLG 129

Query: 312 KLKKQRQEVESKARKQFK 329
                  E E K  +   
Sbjct: 130 NYYYLTAEQEKKKLETDY 147

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 65.2 bits (159), Expect = 2e-12
 Identities = 23/130 (17%), Positives = 48/130 (36%), Gaps = 18/130 (13%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE-C 251
                  G+ + A   YEK+L+    +   +              ++ +        E  
Sbjct: 95  AEMQVCRGQEKDALRMYEKILQ----LEADNLA-----------ANIFLGNYYYLTAEQE 139

Query: 252 RKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS 311
           +K +E   K L +        YR G++ +    +E+A+   + ++    S+E  A   L 
Sbjct: 140 KKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE--AQKTLD 197

Query: 312 KLKKQRQEVE 321
           K+ +  +EV 
Sbjct: 198 KILRIEKEVN 207

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Length = 133

 Score = 61.1 bits (149), Expect = 1e-11
 Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query: 57  LIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL 116
           L    + +G G            + VHY G L +   + F D+  D    P  F  G G+
Sbjct: 30  LKYEDLTEGSGAEARA----GQTVSVHYTGWLTD--GQKF-DSSKDR-NDPFAFVLGGGM 81

Query: 117 VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLG 167
           V +G++  V+ M  G +  +T PP   Y        +P  A + +E+ELL 
Sbjct: 82  VIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLD 132

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 1euv_B 3v60_A 3v61_A 3v62_A* Length = 209

 Score = 62.5 bits (152), Expect = 1e-11
 Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query: 57  LIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL 116
           L    + +G G            + VHY G L +   + F D+  D    P  F  G G+
Sbjct: 106 LKYEDLTEGSGAEARA----GQTVSVHYTGWLTD--GQKF-DSSKDR-NDPFAFVLGGGM 157

Query: 117 VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLG 167
           V +G++  V+ M  G +  +T PP   Y        +P  A + +E+ELL 
Sbjct: 158 VIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAAGVIPPNATLVFEVELLD 208

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 59.9 bits (145), Expect = 3e-11
 Identities = 17/144 (11%), Positives = 50/144 (34%), Gaps = 16/144 (11%)

Query: 184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 243
           D  E++       ++ G +E A   ++ +      ++  D               L + A
Sbjct: 19  DTLEQLYSLAFNQYQSGXYEDAHXVFQALCV----LDHYDSR-----------FFLGLGA 63

Query: 244 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 303
           C   +G+   +I + +     +    +  +      +  GE  EA+    +  ++   + 
Sbjct: 64  CRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA-NX 122

Query: 304 PDATAALSKLKKQRQEVESKARKQ 327
           P+     +++    + ++ K   +
Sbjct: 123 PEFXELSTRVSSMLEAIKLKKEMK 146

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 62.3 bits (152), Expect = 4e-11
 Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 15/101 (14%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
           G  L K+G+  LA  +Y+  +      +    +           ++  + +     G   
Sbjct: 81  GKILMKKGQDSLAIQQYQAAVD----RDTTRLD-----------MYGQIGSYFYNKGNFP 125

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
            +I+   K +       K  Y  G AY    E+ +A   F 
Sbjct: 126 LAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFV 166

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 6/84 (7%)

Query: 238 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 297
               A  L K     ++IE  NK+            RR + Y  L +++ AQ+D E    
Sbjct: 6   EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS 65

Query: 298 VDKSSEPDATA------ALSKLKK 315
              +++  +         L K  +
Sbjct: 66  KVNATKAKSADFEYYGKILMKKGQ 89

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 21/104 (20%), Positives = 34/104 (32%), Gaps = 18/104 (17%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
           G+  + +G F LA    EK +R        D +           +   +        E  
Sbjct: 115 GSYFYNKGNFPLAIQYMEKQIR----PTTTDPK-----------VFYELGQAYYYNKEYV 159

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALG---EFEEAQRDFE 293
           K+  +  KVL+  P    G   R  A  A     +   A+  +E
Sbjct: 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYE 203

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 14/104 (13%), Positives = 30/104 (28%), Gaps = 18/104 (17%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
            + LFK   +  A   + K+                        ++   A C  +L +  
Sbjct: 10  ADFLFKNNNYAEAIEVFNKLEA----KKYNSPY-----------IYNRRAVCYYELAKYD 54

Query: 253 KSIEACN---KVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
            + +        ++A  A        G   M  G+   A + ++
Sbjct: 55  LAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQ 98

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 16/141 (11%), Positives = 37/141 (26%), Gaps = 34/141 (24%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
           G   +   ++  A + + KVL     + P                +L  A          
Sbjct: 149 GQAYYYNKEYVKADSSFVKVLE----LKPNIYI-----------GYLWRARANAAQDPDT 193

Query: 253 K---SIEACNKVL--------DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 301
           K   +     K++              ++        Y    +  +A   ++ ++ +D  
Sbjct: 194 KQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD-- 251

Query: 302 SEPDATAALSK----LKKQRQ 318
             P    A+      L+    
Sbjct: 252 --PTNKKAIDGLKMKLEHHHH 270

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 61.8 bits (151), Expect = 1e-10
 Identities = 20/101 (19%), Positives = 29/101 (28%), Gaps = 15/101 (14%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
              L   G  E A   Y   L+     NP               +  ++   L  LG   
Sbjct: 108 AAALVAAGDMEGAVQAYVSALQ----YNPDLYC-----------VRSDLGNLLKALGRLE 152

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
           ++     K ++  P         G  + A GE   A   FE
Sbjct: 153 EAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFE 193

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 61.8 bits (151), Expect = 1e-10
 Identities = 16/101 (15%), Positives = 34/101 (33%), Gaps = 15/101 (14%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
            +R ++ G FE A+    ++ R      P +             + L +++   +     
Sbjct: 6   AHREYQAGDFEAAERHCMQLWR----QEPDNTG-----------VLLLLSSIHFQCRRLD 50

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
           +S       +  NP   +     G  Y   G+ +EA   + 
Sbjct: 51  RSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYR 91

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 61.0 bits (149), Expect = 2e-10
 Identities = 16/101 (15%), Positives = 35/101 (34%), Gaps = 15/101 (14%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
            +  F+  + + +       ++     NP   E            + N+     + G+ +
Sbjct: 40  SSIHFQCRRLDRSAHFSTLAIK----QNPLLAE-----------AYSNLGNVYKERGQLQ 84

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
           ++IE     L   P  + G      A +A G+ E A + + 
Sbjct: 85  EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 60.6 bits (148), Expect = 3e-10
 Identities = 20/101 (19%), Positives = 29/101 (28%), Gaps = 15/101 (14%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
           GN L   G+ E AKA Y K +       P                  N+       GE  
Sbjct: 142 GNLLKALGRLEEAKACYLKAIE----TQPNFAV-----------AWSNLGCVFNAQGEIW 186

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
            +I    K +  +P  +      G        F+ A   + 
Sbjct: 187 LAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYL 227

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 60.2 bits (147), Expect = 3e-10
 Identities = 25/121 (20%), Positives = 43/121 (35%), Gaps = 19/121 (15%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
               +++G  +LA   Y + +     + P   +            + N+A  L + G   
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIE----LQPHFPD-----------AYCNLANALKEKGSVA 288

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 312
           ++ +  N  L   P H   L          G  EEA R +   ++V     P+  AA S 
Sbjct: 289 EAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF----PEFAAAHSN 344

Query: 313 L 313
           L
Sbjct: 345 L 345

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 60.2 bits (147), Expect = 4e-10
 Identities = 16/101 (15%), Positives = 34/101 (33%), Gaps = 15/101 (14%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
           G     +G+  LA   +EK +     ++P   +            ++N+   L +     
Sbjct: 176 GCVFNAQGEIWLAIHHFEKAVT----LDPNFLD-----------AYINLGNVLKEARIFD 220

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
           +++ A  + L  +P H          Y   G  + A   + 
Sbjct: 221 RAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYR 261

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 59.5 bits (145), Expect = 6e-10
 Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 15/101 (14%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
           GN   + G+ + A   Y   LR    + P   +            ++N+AA L+  G+  
Sbjct: 74  GNVYKERGQLQEAIEHYRHALR----LKPDFID-----------GYINLAAALVAAGDME 118

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
            +++A    L  NP         G    ALG  EEA+  + 
Sbjct: 119 GAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL 159

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 58.3 bits (142), Expect = 1e-09
 Identities = 20/121 (16%), Positives = 39/121 (32%), Gaps = 19/121 (15%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
            N L ++G    A+  Y   LR    + P   +              N+A    + G   
Sbjct: 278 ANALKEKGSVAEAEDCYNTALR----LCPTHAD-----------SLNNLANIKREQGNIE 322

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 312
           +++    K L+  P                G+ +EA   ++  +++     P    A S 
Sbjct: 323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS----PTFADAYSN 378

Query: 313 L 313
           +
Sbjct: 379 M 379

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 56.8 bits (138), Expect = 5e-09
 Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 15/101 (14%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
           GN L +   F+ A A Y + L     ++P               +H N+A    + G   
Sbjct: 210 GNVLKEARIFDRAVAAYLRALS----LSPNHAV-----------VHGNLACVYYEQGLID 254

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
            +I+   + ++  P           A    G   EA+  + 
Sbjct: 255 LAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYN 295

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 49.5 bits (119), Expect = 9e-07
 Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 15/92 (16%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
            N   ++G  E A   Y K L     V P+               H N+A+ L + G+ +
Sbjct: 312 ANIKREQGNIEEAVRLYRKALE----VFPEFAA-----------AHSNLASVLQQQGKLQ 356

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGE 284
           +++    + +  +P         G     + +
Sbjct: 357 EALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 49.1 bits (118), Expect = 1e-06
 Identities = 5/55 (9%), Positives = 16/55 (29%)

Query: 239 LNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
           + +A    + G+   +   C ++    P +   L      +      + +     
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFST 57

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 58.7 bits (141), Expect = 1e-10
 Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 17/152 (11%)

Query: 185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC 244
            A        R    G+++ A A   + + + +H  P   EE     G     H  +A  
Sbjct: 10  GAYLALSDAQRQLVAGEYDEAAANCRRAM-EISHTMP--PEEAFDHAGFDAFCHAGLAEA 66

Query: 245 LLKLGECRKSIEACNKVL-----------DANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
           L  L    +++ + +K L           D     +  +Y R +A   LG   EA  +F+
Sbjct: 67  LAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFK 126

Query: 294 MMMKVD---KSSEPDATAALSKLKKQRQEVES 322
            ++++    K   P     +     +  ++ +
Sbjct: 127 KVVEMIEERKGETPGKERMMEVAIDRIAQLGA 158

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 21/123 (17%), Positives = 45/123 (36%), Gaps = 10/123 (8%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
           G   F+ G+++ A+  +   L     +  +   +      K   L  N+     KL +  
Sbjct: 200 GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVD------KWEPLLNNLGHVCRKLKKYA 253

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 312
           ++++   + L   P +       G  +  +G FE A   F   + +      D T +++ 
Sbjct: 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR----RDDTFSVTM 309

Query: 313 LKK 315
           L  
Sbjct: 310 LGH 312

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 12/96 (12%), Positives = 26/96 (27%), Gaps = 15/96 (15%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
           G+   K  K+  A   + + L     + PQ+              +  +      +G   
Sbjct: 243 GHVCRKLKKYAEALDYHRQALV----LIPQNAS-----------TYSAIGYIHSLMGNFE 287

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEA 288
            +++  +  L         +   G          EA
Sbjct: 288 NAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEA 323

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 16/116 (13%), Positives = 36/116 (31%), Gaps = 17/116 (14%)

Query: 193 GNRLFKEGKFELAKAKYEKVLR-DFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC 251
           G+    E + + A A Y    +       P                 L +          
Sbjct: 132 GHSFAVESEHDQAMAAYFTAAQLMKGCHLP----------------MLYIGLEYGLTNNS 175

Query: 252 RKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDAT 307
           + +    ++ L   P     ++  G+     GE++ A++ F   ++  K+   + T
Sbjct: 176 KLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT 231

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 15/102 (14%), Positives = 33/102 (32%), Gaps = 16/102 (15%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
             R +    F++       V+      +P                       L++L +  
Sbjct: 29  AERHYYNCDFKMCYKLTSVVME----KDPFHAS-----------CLPVHIGTLVELNKAN 73

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGE-FEEAQRDFE 293
           +     +K++D  P++    +  G  Y+ +G   E A+R   
Sbjct: 74  ELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLS 115

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 46.1 bits (110), Expect = 9e-06
 Identities = 12/102 (11%), Positives = 22/102 (21%), Gaps = 16/102 (15%)

Query: 193 GNRLFKEGK-FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC 251
           G      G   E A+    K       +                   +          E 
Sbjct: 97  GCYYLMVGHKNEHARRYLSKATT----LEKTYGP-----------AWIAYGHSFAVESEH 141

Query: 252 RKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
            +++ A              +   G+ Y      + A+R F 
Sbjct: 142 DQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFS 183

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 13/94 (13%), Positives = 34/94 (36%), Gaps = 3/94 (3%)

Query: 237 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 296
           + +++A       + +   +  + V++ +P H   L       + L +  E       ++
Sbjct: 24  VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLV 83

Query: 297 KVDKSSEPDATAAL-SKLKKQRQEVESKARKQFK 329
            +  S+ P +  A+         + E  AR+   
Sbjct: 84  DLYPSN-PVSWFAVGCYYLMVGHKNE-HARRYLS 115

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 58.6 bits (143), Expect = 2e-10
 Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 19/123 (15%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
           G    +  K++LA     KV       NP +             +   +   L  LG   
Sbjct: 83  GLTYVQVQKYDLAVPLLIKVAE----ANPINFN-----------VRFRLGVALDNLGRFD 127

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 312
           ++I++    L   P   K       +Y  +G  EEA   F+   ++D      A+  L+ 
Sbjct: 128 EAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD----EGASVELAL 183

Query: 313 LKK 315
           + +
Sbjct: 184 VPR 186

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 57.5 bits (140), Expect = 5e-10
 Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 15/101 (14%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
           G    K G++  A    E+V       +  D +           + L++    +K G   
Sbjct: 15  GISHAKAGRYSQAVMLLEQVYD----ADAFDVD-----------VALHLGIAYVKTGAVD 59

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
           +  E   + L   P +VK     G+ Y+ + +++ A     
Sbjct: 60  RGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLI 100

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 54.8 bits (133), Expect = 5e-09
 Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 15/101 (14%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
           G    K G  +      E+ L       P + +           +   +    +++ +  
Sbjct: 49  GIAYVKTGAVDRGTELLERSLA----DAPDNVK-----------VATVLGLTYVQVQKYD 93

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
            ++    KV +ANP +    +R G+A   LG F+EA   F+
Sbjct: 94  LAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFK 134

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 44.8 bits (107), Expect = 1e-05
 Identities = 11/56 (19%), Positives = 21/56 (37%)

Query: 238 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
           + +      K G   +++    +V DA+   V      G+AY+  G  +      E
Sbjct: 11  YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLE 66

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Length = 129

 Score = 56.6 bits (137), Expect = 4e-10
 Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 19/122 (15%)

Query: 57  LIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL 116
           L       G G   +       L+  HY G L N   KVF D+  +  G+PL F  G G 
Sbjct: 14  LAFCDKVVGYGPEAV----KGQLIKAHYVGKLEN--GKVF-DSSYNR-GKPLTFRIGVGE 65

Query: 117 VPEGFEMCV------RLMLPGEIALVTCPPDYAY-----DKFLRPANVPEGAHIQWEIEL 165
           V +G++  +        ML G    +  PP+ AY             +P  + + ++IE 
Sbjct: 66  VIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEY 125

Query: 166 LG 167
           +G
Sbjct: 126 IG 127

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 59.2 bits (144), Expect = 4e-10
 Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 15/101 (14%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
           G      G   LA+  + + L     + P   E           +   +   L + G   
Sbjct: 50  GVLYDSLGLRALARNDFSQALA----IRPDMPE-----------VFNYLGIYLTQAGNFD 94

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
            + EA + VL+ +P +      RG+A    G  + AQ D  
Sbjct: 95  AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLL 135

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 58.9 bits (143), Expect = 6e-10
 Identities = 15/101 (14%), Positives = 30/101 (29%), Gaps = 11/101 (10%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
              L    + E+  A+ E++L      + +  +           L          LG   
Sbjct: 12  AVPLQPTLQQEVILARMEQILASRALTDDERAQ-----------LLYERGVLYDSLGLRA 60

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
            +    ++ L   P   +     G+     G F+ A   F+
Sbjct: 61  LARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFD 101

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 52.7 bits (127), Expect = 6e-08
 Identities = 21/137 (15%), Positives = 39/137 (28%), Gaps = 15/137 (10%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
           G  L + G F+ A   ++ VL     ++P  +             HLN    L   G  +
Sbjct: 84  GIYLTQAGNFDAAYEAFDSVLE----LDPTYNY-----------AHLNRGIALYYGGRDK 128

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 312
            + +        +P          +A   L E +  +   +   K DK            
Sbjct: 129 LAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYL 188

Query: 313 LKKQRQEVESKARKQFK 329
                Q +  + +    
Sbjct: 189 GNISEQTLMERLKADAT 205

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 10/99 (10%), Positives = 26/99 (26%), Gaps = 15/99 (15%)

Query: 195 RLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKS 254
            + ++   E  KA           +     E            +  +    L LG+   +
Sbjct: 190 NISEQTLMERLKADATDNTS----LAEHLSE-----------TNFYLGKYYLSLGDLDSA 234

Query: 255 IEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
                  +  N  +        +    LG+ ++   + +
Sbjct: 235 TALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESD 273

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 58.7 bits (143), Expect = 4e-10
 Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 15/101 (14%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
             R  + G +E A   + K +      N +D              ++N A  L  + E  
Sbjct: 30  MGRGSEFGDYEKAAEAFTKAIE----ENKEDAI-----------PYINFANLLSSVNELE 74

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
           +++   +K L+ + +     Y  G  Y+    ++EA+  FE
Sbjct: 75  RALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFE 115

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 58.7 bits (143), Expect = 4e-10
 Identities = 19/101 (18%), Positives = 39/101 (38%), Gaps = 15/101 (14%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
           GN    +  ++ AK  +EK LR       ++ +           L   +   L+KL + +
Sbjct: 98  GNVYVVKEMYKEAKDMFEKALR----AGMENGD-----------LFYMLGTVLVKLEQPK 142

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
            ++    + ++ N    +  ++ GM     G  +EA   F 
Sbjct: 143 LALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFA 183

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 57.1 bits (139), Expect = 1e-09
 Identities = 15/101 (14%), Positives = 30/101 (29%), Gaps = 15/101 (14%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
            N L    + E A A Y+K L     ++                 +       +     +
Sbjct: 64  ANLLSSVNELERALAFYDKALE----LDSSAAT-----------AYYGAGNVYVVKEMYK 108

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
           ++ +   K L A   +    Y  G   + L + + A    +
Sbjct: 109 EAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQ 149

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 57.1 bits (139), Expect = 2e-09
 Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 15/101 (14%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
           G  L K  + +LA    ++ +     +N  D E                  CL   G   
Sbjct: 132 GTVLVKLEQPKLALPYLQRAVE----LNENDTE-----------ARFQFGMCLANEGMLD 176

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
           +++     V + +P H    Y  G+ Y      E+A    +
Sbjct: 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLD 217

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 48.3 bits (116), Expect = 1e-06
 Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 15/92 (16%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
           G  L  EG  + A +++  V       +P   +              N            
Sbjct: 166 GMCLANEGMLDEALSQFAAVTE----QDPGHAD-----------AFYNAGVTYAYKENRE 210

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGE 284
           K++E  +K +D  P H+  L+ + +       
Sbjct: 211 KALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 47.5 bits (114), Expect = 2e-06
 Identities = 10/89 (11%), Positives = 24/89 (26%), Gaps = 11/89 (12%)

Query: 205 AKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 264
           +   +           P+            ++          + G+  K+ EA  K ++ 
Sbjct: 4   SHHHHHHSSGLV----PRGSHM-------ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE 52

Query: 265 NPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
           N               ++ E E A   ++
Sbjct: 53  NKEDAIPYINFANLLSSVNELERALAFYD 81

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 60.2 bits (146), Expect = 5e-10
 Identities = 15/121 (12%), Positives = 32/121 (26%), Gaps = 19/121 (15%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
            +     G     +   ++ L     ++P   E               +           
Sbjct: 30  ADAELGMGDTTAGEMAVQRGLA----LHPGHPE-----------AVARLGRVRWTQQRHA 74

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 312
           ++     +  DA P H       G A    G+ E A   +    ++     P+     ++
Sbjct: 75  EAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL----PEEPYITAQ 130

Query: 313 L 313
           L
Sbjct: 131 L 131

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 51.0 bits (122), Expect = 4e-07
 Identities = 18/114 (15%), Positives = 29/114 (25%), Gaps = 19/114 (16%)

Query: 200 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN 259
                   +    +R      PQD               L +A   L +G+      A  
Sbjct: 3   ADGPRELLQLRAAVR----HRPQDFV-----------AWLMLADAELGMGDTTAGEMAVQ 47

Query: 260 KVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 313
           + L  +P H + + R G          EA    +          P+       L
Sbjct: 48  RGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA----PEHPGIALWL 97

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 Length = 167

 Score = 56.6 bits (137), Expect = 7e-10
 Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 9/118 (7%)

Query: 57  LIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL 116
           L+ +RI  G G+     P  D    VHY G L +    VF D+  +  G+P  F   E  
Sbjct: 39  LVFQRIARGSGK---RAPAIDDKCEVHYTGRLRD--GTVF-DSSRER-GKPTTFRPNE-- 89

Query: 117 VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDW 174
           V +G+   ++LM  G+   +  P D AY        +P  + +++++EL+  +     
Sbjct: 90  VIKGWTEALQLMREGDRWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELISIKDGGKG 147

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 59.5 bits (144), Expect = 9e-10
 Identities = 17/123 (13%), Positives = 33/123 (26%), Gaps = 12/123 (9%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
           G   F +   + A   ++  L         +                N+     KL    
Sbjct: 482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNEK--------PWAATWANLGHAYRKLKMYD 533

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 312
            +I+A N+ L  +           + Y+       A       + +     P+   A   
Sbjct: 534 AAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS----PNEIMASDL 589

Query: 313 LKK 315
           LK+
Sbjct: 590 LKR 592

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 56.0 bits (135), Expect = 1e-08
 Identities = 13/108 (12%), Positives = 23/108 (21%), Gaps = 22/108 (20%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
           G +  + G   LA    +        +   D             L   +        + +
Sbjct: 448 GMQHMQLGNILLANEYLQSSYA----LFQYDPL-----------LLNELGVVAFNKSDMQ 492

Query: 253 KSIEACNKVLDA-------NPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
            +I      L                    G AY  L  ++ A     
Sbjct: 493 TAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 55.6 bits (134), Expect = 2e-08
 Identities = 17/101 (16%), Positives = 26/101 (25%), Gaps = 15/101 (14%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
           G       K   A+  + K       ++PQ                +  A      GE  
Sbjct: 380 GIYYLCVNKISEARRYFSKSST----MDPQFGP-----------AWIGFAHSFAIEGEHD 424

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
           ++I A                  GM +M LG    A    +
Sbjct: 425 QAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQ 465

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 55.6 bits (134), Expect = 2e-08
 Identities = 18/124 (14%), Positives = 38/124 (30%), Gaps = 18/124 (14%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
            +    EG+ + A + Y    R    +                  +L +    ++LG   
Sbjct: 414 AHSFAIEGEHDQAISAYTTAAR----LFQGTHL-----------PYLFLGMQHMQLGNIL 458

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE---MMMKVDKSSEPDATAA 309
            + E               L   G+      + + A   F+   +++K  +S+E    A 
Sbjct: 459 LANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT 518

Query: 310 LSKL 313
            + L
Sbjct: 519 WANL 522

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 48.3 bits (115), Expect = 3e-06
 Identities = 18/124 (14%), Positives = 38/124 (30%), Gaps = 27/124 (21%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDE----EGKVFV--GKRNLL--------- 237
            + LF   +F    A   K+L     ++P + +            G++N L         
Sbjct: 312 ADTLFVRSRFIDVLAITTKILE----IDPYNLDVYPLHLASLHESGEKNKLYLISNDLVD 367

Query: 238 --------HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQ 289
                    L V    L + +  ++    +K    +P           ++   GE ++A 
Sbjct: 368 RHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAI 427

Query: 290 RDFE 293
             + 
Sbjct: 428 SAYT 431

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 47.5 bits (113), Expect = 5e-06
 Identities = 19/148 (12%), Positives = 41/148 (27%), Gaps = 14/148 (9%)

Query: 182 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNV 241
             ++A  +R        +   E    + E  L   N    +  +           L L  
Sbjct: 264 SKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING-LEKSSD-----------LLLCK 311

Query: 242 AACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 301
           A  L         +    K+L+ +P ++        +    GE  +       ++     
Sbjct: 312 ADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE 371

Query: 302 SEPDATAALSKLKKQRQEVESKARKQFK 329
                  A+        ++  +AR+ F 
Sbjct: 372 K-AVTWLAVGIYYLCVNKIS-EARRYFS 397

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 12/87 (13%), Positives = 25/87 (28%), Gaps = 15/87 (17%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
           G+   K   ++ A     + L     ++  D             +H  +A   L      
Sbjct: 523 GHAYRKLKMYDAAIDALNQGLL----LSTNDAN-----------VHTAIALVYLHKKIPG 567

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAY 279
            +I   ++ L  +P  +        A 
Sbjct: 568 LAITHLHESLAISPNEIMASDLLKRAL 594

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 18/142 (12%), Positives = 51/142 (35%), Gaps = 20/142 (14%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
           G  L+++ ++E A  +  +  +D   + P+              +  N+    L++ +  
Sbjct: 112 GGFLYEQKRYEEAYQRLLEASQDT--LYPERSR-----------VFENLGLVSLQMKKPA 158

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDA---TAA 309
           ++ E   K L  N                  E+  A++ +++  +    +   +      
Sbjct: 159 QAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN-ARSLLLGIR 217

Query: 310 LSKLKKQRQEVES---KARKQF 328
           L+K+ + R    S   + ++ +
Sbjct: 218 LAKVFEDRDTAASYGLQLKRLY 239

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 19/101 (18%), Positives = 32/101 (31%), Gaps = 15/101 (14%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
           G    + G  E AK    K L     ++P   +            H  +A       E +
Sbjct: 44  GLGYLQRGNTEQAKVPLRKALE----IDPSSAD-----------AHAALAVVFQTEMEPK 88

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
            + E   K L ++  + + L   G        +EEA +   
Sbjct: 89  LADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLL 129

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 10/101 (9%), Positives = 29/101 (28%), Gaps = 16/101 (15%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
            + L   G     +    K  +       +  +            ++ +    L+ G   
Sbjct: 11  SSGLVPRGSHMGDQN-PLKTDKG----RDEARD-----------AYIQLGLGYLQRGNTE 54

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
           ++     K L+ +P+         + +    E + A  ++ 
Sbjct: 55  QAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYR 95

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 12/101 (11%), Positives = 27/101 (26%), Gaps = 15/101 (14%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
           G  + K      A   +E V +      P+ +E              ++     +  +  
Sbjct: 28  GLSMLKLANLAEAALAFEAVCQ----AAPEREE-----------AWRSLGLTQAENEKDG 72

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
            +I A N     +P  +       +++        A     
Sbjct: 73  LAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLR 113

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 18/101 (17%), Positives = 41/101 (40%), Gaps = 15/101 (14%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
           G        ++ A A   + +     + P D +           L   + A L      +
Sbjct: 179 GVLYNLSNNYDSAAANLRRAVE----LRPDDAQ-----------LWNKLGATLANGNRPQ 223

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
           ++++A N+ LD NP +V+ +Y   ++Y  + +++ A +   
Sbjct: 224 EALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLV 264

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 16/105 (15%), Positives = 29/105 (27%), Gaps = 8/105 (7%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDE----EGKVFVGKRNLLHLNVAACLLKL 248
                 E     A A     L       PQ ++      +  V   +L   +        
Sbjct: 96  AVSHTNEHNANAALASLRAWLL----SQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAP 151

Query: 249 GECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
            E R+     +  L+ NP   +     G+ Y     ++ A  +  
Sbjct: 152 NEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLR 196

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 10/96 (10%), Positives = 24/96 (25%), Gaps = 15/96 (15%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
                   ++   +      L     +NP D +           LH ++           
Sbjct: 145 DFFFAAPNEYRECRTLLHAALE----MNPNDAQ-----------LHASLGVLYNLSNNYD 189

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEA 288
            +     + ++  P   +   + G         +EA
Sbjct: 190 SAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEA 225

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 13/116 (11%), Positives = 28/116 (24%), Gaps = 30/116 (25%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
           G    +  K  LA             ++P+D             +H  +A          
Sbjct: 62  GLTQAENEKDGLAIIALNHARM----LDPKDIA-----------VHAALAVSHTNEHNAN 106

Query: 253 KSIEACNKVLDANPAHV---------------KGLYRRGMAYMALGEFEEAQRDFE 293
            ++ +    L + P +                  +      + A  E+ E +    
Sbjct: 107 AALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLH 162

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 43.4 bits (103), Expect = 7e-05
 Identities = 15/94 (15%), Positives = 22/94 (23%), Gaps = 15/94 (15%)

Query: 200 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN 259
           G        Y      F   NP    E            +     +LKL    ++  A  
Sbjct: 1   GHMLQNNTDYP-----FEANNPYMYHEN----------PMEEGLSMLKLANLAEAALAFE 45

Query: 260 KVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
            V  A P   +     G+      +   A     
Sbjct: 46  AVCQAAPEREEAWRSLGLTQAENEKDGLAIIALN 79

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 14/101 (13%), Positives = 34/101 (33%), Gaps = 18/101 (17%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
           G     +  ++ A       L  F+ V                 +  N+      L    
Sbjct: 13  GVLAADKKDWKGA-------LDAFSAVQDPHSR-----------ICFNIGCMYTILKNMT 54

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
           ++ +A  + ++ +       ++RGM Y    +++ A +D +
Sbjct: 55  EAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLK 95

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 12/143 (8%), Positives = 34/143 (23%), Gaps = 32/143 (22%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
           G           A+  + + +      +                 +        +  +  
Sbjct: 44  GCMYTILKNMTEAEKAFTRSIN----RDKHLAV-----------AYFQRGMLYYQTEKYD 88

Query: 253 KSIEACNKVLDANPA----------------HVKGLYRRGMAYMALGEFEEAQRDFEMMM 296
            +I+   + L                       + LY     Y    E+++A+    +  
Sbjct: 89  LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148

Query: 297 KVD-KSSEPDATAALSKLKKQRQ 318
            +  +        A+  + KQ+ 
Sbjct: 149 SMKSEPRHSKIDKAMECVWKQKL 171

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A* Length = 213

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 25/110 (22%), Positives = 41/110 (37%), Gaps = 10/110 (9%)

Query: 62  IRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGF 121
           I  G G  P         + V Y G L++    VF D+     G+P  F   +  V  G+
Sbjct: 113 INSGNGVKPGK----SDTVTVEYTGRLID--GTVF-DSTEKT-GKPATFQVSQ--VIPGW 162

Query: 122 EMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKP 171
              ++LM  G    +  P   AY        +     + ++I L+  +K 
Sbjct: 163 TEALQLMPAGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLISVKKS 212

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} Length = 219

 Score = 55.9 bits (135), Expect = 3e-09
 Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 13/109 (11%)

Query: 62  IRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGF 121
           +  G G  P      +  + V Y G L +   K+F     D   QP  F     ++  G+
Sbjct: 124 LTPGTGPKPDA----NGRVEVRYVGRLPD--GKIF-----DQSTQPQWFRLD-SVIS-GW 170

Query: 122 EMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEK 170
              ++ M  G    +  P D AY        +     + +EIEL+   +
Sbjct: 171 TSALQNMPTGAKWRLVIPSDQAYGAEGAGDLIDPFTPLVFEIELIAVSQ 219

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 53.2 bits (129), Expect = 3e-09
 Identities = 13/103 (12%), Positives = 34/103 (33%), Gaps = 17/103 (16%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
           G   +  G +  +   +EK ++    ++P++ +             L     L  L    
Sbjct: 13  GVLQYDAGNYTESIDLFEKAIQ----LDPEESK-----------YWLMKGKALYNLERYE 57

Query: 253 KSIEACNKVLD--ANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
           ++++  N V++   +  +      +  A   +   E      E
Sbjct: 58  EAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAE 100

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 49.4 bits (119), Expect = 9e-08
 Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 7/91 (7%)

Query: 238 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 297
           +          G   +SI+   K +  +P   K    +G A   L  +EEA   +  ++ 
Sbjct: 9   YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVIN 68

Query: 298 VDKSSEPDATA------ALSKLKKQRQEVES 322
           V +    +         AL  ++ +  E E 
Sbjct: 69  VIEDEY-NKDVWAAKADALRYIEGKEVEAEI 98

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 53.9 bits (131), Expect = 4e-09
 Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 15/101 (14%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
           GN  +K+G ++ A   Y+K L     ++P+  E              N+     K G+  
Sbjct: 8   GNAYYKQGDYDEAIEYYQKALE----LDPRSAE-----------AWYNLGNAYYKQGDYD 52

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
           ++IE   K L+ +P   +  Y  G AY   G+++EA   ++
Sbjct: 53  EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 93

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 49.7 bits (120), Expect = 9e-08
 Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 15/101 (14%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
           GN  +K+G ++ A   Y+K L     ++P+  E              N+     K G+  
Sbjct: 42  GNAYYKQGDYDEAIEYYQKALE----LDPRSAE-----------AWYNLGNAYYKQGDYD 86

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
           ++IE   K L+ +P   +  Y  G AY   G+++EA   ++
Sbjct: 87  EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 40.8 bits (97), Expect = 1e-04
 Identities = 15/56 (26%), Positives = 27/56 (48%)

Query: 238 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
             N+     K G+  ++IE   K L+ +P   +  Y  G AY   G+++EA   ++
Sbjct: 4   WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 59

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 57.0 bits (138), Expect = 4e-09
 Identities = 16/101 (15%), Positives = 33/101 (32%), Gaps = 15/101 (14%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
           G +  KEG   +     E  +      +P D E               +     +    +
Sbjct: 72  GLKRLKEGDLPVTILFMEAAIL----QDPGDAE-----------AWQFLGITQAENENEQ 116

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
            +I A  + L+  P ++K L    ++Y      ++A    +
Sbjct: 117 AAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALK 157

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 56.6 bits (137), Expect = 4e-09
 Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 15/101 (14%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
           G      G+F  A   +   L     V P+D             L   + A L       
Sbjct: 220 GVLFHLSGEFNRAIDAFNAALT----VRPEDYS-----------LWNRLGATLANGDRSE 264

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
           +++EA  + L+  P  ++  Y  G++ + LG + EA  +F 
Sbjct: 265 EAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFL 305

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 11/109 (10%), Positives = 32/109 (29%), Gaps = 15/109 (13%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
           G    +    + A    ++ L     + P + +             + +A         +
Sbjct: 106 GITQAENENEQAAIVALQRCLE----LQPNNLK-----------ALMALAVSYTNTSHQQ 150

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 301
            + EA    +  NP +   +  +  +        ++  D  ++  V + 
Sbjct: 151 DACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKEL 199

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 17/108 (15%), Positives = 31/108 (28%), Gaps = 11/108 (10%)

Query: 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACL 245
            E  R       +E + ++  +  EK    F+  NP  D  G                  
Sbjct: 27  EEMARRNWISENQEAQNQVTVSASEKGYY-FHTENPFKDWPG----------AFEEGLKR 75

Query: 246 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
           LK G+   +I      +  +P   +     G+        + A    +
Sbjct: 76  LKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQ 123

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 17/102 (16%), Positives = 25/102 (24%), Gaps = 15/102 (14%)

Query: 193 GNRLFKEGKFELAKA---KYEKVLRDFN---HVNPQDDEEGKVFVGKRNLLHLNVAACLL 246
                   +   +       E V   +    H N    +           L   +     
Sbjct: 174 KGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPD---------LQTGLGVLFH 224

Query: 247 KLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEA 288
             GE  ++I+A N  L   P       R G         EEA
Sbjct: 225 LSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEA 266

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 13/113 (11%), Positives = 27/113 (23%), Gaps = 27/113 (23%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
                     + A    +  ++     NP+              L  N            
Sbjct: 140 AVSYTNTSHQQDACEALKNWIK----QNPKYKY-----------LVKNKKGSPGLTRRMS 184

Query: 253 KSIEACNKVLDANPAHVKGLYR------------RGMAYMALGEFEEAQRDFE 293
           KS    + +      +++  ++             G+ +   GEF  A   F 
Sbjct: 185 KSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFN 237

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 56.6 bits (137), Expect = 4e-09
 Identities = 14/101 (13%), Positives = 31/101 (30%), Gaps = 15/101 (14%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
           G R  +EG    A   +E  ++     +P+  E               +     +  +  
Sbjct: 71  GLRRLQEGDLPNAVLLFEAAVQ----QDPKHME-----------AWQYLGTTQAENEQEL 115

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
            +I A  + L+  P +   L    +++       +A     
Sbjct: 116 LAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILR 156

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 15/101 (14%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
           G      G+++ A   +   L     V P D             L   + A L    +  
Sbjct: 224 GVLFNLSGEYDKAVDCFTAALS----VRPNDYL-----------LWNKLGATLANGNQSE 268

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
           +++ A  + L+  P +++  Y  G++ + LG   EA   F 
Sbjct: 269 EAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFL 309

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 15/107 (14%), Positives = 26/107 (24%), Gaps = 10/107 (9%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDE----EGKVFVGKRNLLHLNVAACLLKL 248
                 E     A       LR      P          +   G        +   LL  
Sbjct: 139 AVSFTNESLQRQACEILRDWLR----YTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194

Query: 249 GECRKSIEACNKVLDANPAHV--KGLYRRGMAYMALGEFEEAQRDFE 293
               +  E     +  +P  +        G+ +   GE+++A   F 
Sbjct: 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFT 241

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 47.0 bits (112), Expect = 6e-06
 Identities = 14/97 (14%), Positives = 27/97 (27%), Gaps = 11/97 (11%)

Query: 197 FKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIE 256
           +     +L  A Y+K  + F   NP  D                     L+ G+   ++ 
Sbjct: 37  WLSDYDDLTSATYDKGYQ-FEEENPLRDHPQ----------PFEEGLRRLQEGDLPNAVL 85

Query: 257 ACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
                +  +P H++     G       +   A     
Sbjct: 86  LFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALR 122

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 46.6 bits (111), Expect = 9e-06
 Identities = 14/96 (14%), Positives = 27/96 (28%), Gaps = 13/96 (13%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
              L  +  F   K  +   +R    ++P   +           +   +       GE  
Sbjct: 188 LGSLLSDSLFLEVKELFLAAVR----LDPTSIDPD---------VQCGLGVLFNLSGEYD 234

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEA 288
           K+++     L   P       + G       + EEA
Sbjct: 235 KAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEA 270

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 17/108 (15%), Positives = 30/108 (27%), Gaps = 26/108 (24%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
           G  L    + E A A Y + L     + P                  N+    + LG  R
Sbjct: 258 GATLANGNQSEEAVAAYRRALE----LQPGYIR-----------SRYNLGISCINLGAHR 302

Query: 253 KSIEACNKVLDANPAHVKGLYRR-----------GMAYMALGEFEEAQ 289
           +++E   + L+                        +A   LG+ +   
Sbjct: 303 EAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 57.1 bits (137), Expect = 5e-09
 Identities = 22/128 (17%), Positives = 47/128 (36%), Gaps = 19/128 (14%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
            + L ++GK + A   Y++ +R    ++P   +            + N+   L ++ + +
Sbjct: 50  ASVLQQQGKLQEALMHYKEAIR----ISPTFAD-----------AYSNMGNTLKEMQDVQ 94

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 312
            +++   + +  NPA           +   G   EA   +   +K+     PD   A   
Sbjct: 95  GALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK----PDFPDAYCN 150

Query: 313 LKKQRQEV 320
           L    Q V
Sbjct: 151 LAHCLQIV 158

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 54.0 bits (129), Expect = 6e-08
 Identities = 21/121 (17%), Positives = 44/121 (36%), Gaps = 19/121 (15%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
            N   ++G  E A   Y K L     V P+               H N+A+ L + G+ +
Sbjct: 16  ANIKREQGNIEEAVRLYRKALE----VFPEFAA-----------AHSNLASVLQQQGKLQ 60

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 312
           +++    + +  +P         G     + + + A + +   ++++    P    A S 
Sbjct: 61  EALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN----PAFADAHSN 116

Query: 313 L 313
           L
Sbjct: 117 L 117

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 47.1 bits (111), Expect = 9e-06
 Identities = 15/110 (13%), Positives = 33/110 (30%), Gaps = 15/110 (13%)

Query: 184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 243
             A+     GN L +    + A   Y + ++    +NP   +            H N+A+
Sbjct: 75  TFADAYSNMGNTLKEMQDVQGALQCYTRAIQ----INPAFAD-----------AHSNLAS 119

Query: 244 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
                G   ++I +    L   P               + ++ +     +
Sbjct: 120 IHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMK 169

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 13/130 (10%), Positives = 28/130 (21%), Gaps = 18/130 (13%)

Query: 184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 243
           ++   I   G         +       +       + P+                 +   
Sbjct: 376 EQVVAIASNGGGKQALETVQRLLPVLCQAHG----LTPEQVVA-----------IASHDG 420

Query: 244 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 303
               L   ++ +    +     P  V  +   G    AL          +       +  
Sbjct: 421 GKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPD---PALAALT 477

Query: 304 PDATAALSKL 313
            D   AL+ L
Sbjct: 478 NDHLVALACL 487

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 8/116 (6%), Positives = 20/116 (17%), Gaps = 15/116 (12%)

Query: 184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 243
            +   I             +       +       + P+                 +   
Sbjct: 104 QQVVAIASHDGGKQALETVQRLLPVLCQAHG----LTPEQVV-----------AIASHDG 148

Query: 244 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 299
               L   +  +    +     P  V  +   G    AL   +           + 
Sbjct: 149 GKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 204

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 54.0 bits (130), Expect = 4e-08
 Identities = 10/128 (7%), Positives = 25/128 (19%), Gaps = 19/128 (14%)

Query: 184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 243
            +   I             +       +       + PQ                 +   
Sbjct: 274 QQVVAIASNSGGKQALETVQRLLPVLCQAHG----LTPQQVVA-----------IASNGG 318

Query: 244 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 303
               L   ++ +    +     P  V  +        AL   +           +     
Sbjct: 319 GKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLT---- 374

Query: 304 PDATAALS 311
           P+   A++
Sbjct: 375 PEQVVAIA 382

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 54.0 bits (130), Expect = 5e-08
 Identities = 7/110 (6%), Positives = 19/110 (17%), Gaps = 15/110 (13%)

Query: 184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 243
            +   I             +       +       + P+                 +   
Sbjct: 342 QQVVAIASHDGGKQALETVQRLLPVLCQAHG----LTPEQVV-----------AIASNGG 386

Query: 244 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
               L   ++ +    +     P  V  +        AL   +       
Sbjct: 387 GKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLC 436

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 51.7 bits (124), Expect = 2e-07
 Identities = 10/110 (9%), Positives = 22/110 (20%), Gaps = 15/110 (13%)

Query: 184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 243
           ++   I   G         +       +       + PQ                 +   
Sbjct: 172 EQVVAIASNGGGKQALETVQRLLPVLCQAHG----LTPQQVV-----------AIASNGG 216

Query: 244 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
               L   ++ +    +     P  V  +   G    AL   +       
Sbjct: 217 GKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLC 266

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 51.7 bits (124), Expect = 2e-07
 Identities = 8/101 (7%), Positives = 18/101 (17%), Gaps = 15/101 (14%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
           G         +       +       + PQ                 +       L   +
Sbjct: 215 GGGKQALETVQRLLPVLCQAHG----LTPQQVV-----------AIASNGGGKQALETVQ 259

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
           + +    +     P  V  +        AL   +       
Sbjct: 260 RLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLC 300

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 8/96 (8%), Positives = 19/96 (19%), Gaps = 12/96 (12%)

Query: 199 EGKFELAKAKYEKVLRDF-NHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEA 257
                 A   +   L     ++ P+                 +       L   ++ +  
Sbjct: 46  GVTAVEAVHAWRNALTGAPLNLTPEQVVA-----------IASHDGGKQALETVQRLLPV 94

Query: 258 CNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
             +     P  V  +        AL   +       
Sbjct: 95  LCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLC 130

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 54.7 bits (131), Expect = 1e-08
 Identities = 24/143 (16%), Positives = 46/143 (32%), Gaps = 18/143 (12%)

Query: 196 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR--K 253
           L K  + +LA+ + +K+       +               L  L  A   L  G  +   
Sbjct: 140 LLKLDRLDLARKELKKMQD----QDEDAT-----------LTQLATAWVSLAAGGEKLQD 184

Query: 254 SIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 313
           +     ++ D     +  L  +   +MA G +E A+   +  +  D S  P+    L  L
Sbjct: 185 AYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVL 243

Query: 314 KKQRQEVESKARKQFKGLFDKKP 336
            +   +      +    L D   
Sbjct: 244 SQHLGKPPEVTNRYLSQLKDAHR 266

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 51.7 bits (124), Expect = 2e-08
 Identities = 12/101 (11%), Positives = 27/101 (26%), Gaps = 15/101 (14%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
           G  + K      A   +E V +      P+ +E              ++     +  +  
Sbjct: 24  GLSMLKLANLAEAALAFEAVCQ----KEPEREE-----------AWRSLGLTQAENEKDG 68

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
            +I A N     +P  +       +++        A     
Sbjct: 69  LAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLR 109

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 16/98 (16%), Positives = 25/98 (25%), Gaps = 14/98 (14%)

Query: 216 FNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRR 275
           F   NP    E            +     +LKL    ++  A   V    P   +     
Sbjct: 8   FEANNPYMYHEN----------PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSL 57

Query: 276 GMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 313
           G+      +   A         +D    P   A  + L
Sbjct: 58  GLTQAENEKDGLAIIALNHARMLD----PKDIAVHAAL 91

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 51.6 bits (125), Expect = 2e-08
 Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 15/101 (14%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
           GN  +K+G ++ A   Y+K L     ++P + E              N+     K G+  
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALE----LDPNNAE-----------AWYNLGNAYYKQGDYD 60

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
           ++IE   K L+ +P + +  Y  G AY   G+++EA   ++
Sbjct: 61  EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 101

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 42.8 bits (102), Expect = 2e-05
 Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 10/74 (13%)

Query: 220 NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAY 279
           +P +  E             N+     K G+  ++IE   K L+ +P + +  Y  G AY
Sbjct: 4   DPGNSAEA----------WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 53

Query: 280 MALGEFEEAQRDFE 293
              G+++EA   ++
Sbjct: 54  YKQGDYDEAIEYYQ 67

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 41.6 bits (99), Expect = 5e-05
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 15/91 (16%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
           GN  +K+G ++ A   Y+K L     ++P + E              N+     K G+  
Sbjct: 50  GNAYYKQGDYDEAIEYYQKALE----LDPNNAE-----------AWYNLGNAYYKQGDYD 94

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALG 283
           ++IE   K L+ +P + +     G A    G
Sbjct: 95  EAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 22/138 (15%), Positives = 38/138 (27%), Gaps = 17/138 (12%)

Query: 193 GNRLFKE-GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC 251
           G  L     +   + A ++K L D     P                +LN   C  K G+ 
Sbjct: 83  GWFLCGRLNRPAESMAYFDKALAD--PTYPTPYI-----------ANLNKGICSAKQGQF 129

Query: 252 RKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDA---TA 308
             +     + L A P             M  G+  +A   F+      +  + D      
Sbjct: 130 GLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGW 189

Query: 309 ALSKLKKQRQEVESKARK 326
            ++K     Q       +
Sbjct: 190 KIAKALGNAQAAYEYEAQ 207

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 16/102 (15%), Positives = 29/102 (28%), Gaps = 16/102 (15%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
                +   +  A A  E  L+     +P+++              L  A     L    
Sbjct: 15  AMEYMRGQDYRQATASIEDALK----SDPKNEL-----------AWLVRAEIYQYLKVND 59

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMA-LGEFEEAQRDFE 293
           K+ E+  + L   P   +     G      L    E+   F+
Sbjct: 60  KAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFD 101

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 10/57 (17%), Positives = 23/57 (40%)

Query: 237 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
           +   +A   ++  + R++  +    L ++P +      R   Y  L   ++AQ  F 
Sbjct: 10  IKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFR 66

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 52.2 bits (126), Expect = 5e-08
 Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 16/102 (15%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
           G      G+ + A+A  ++ L     +    +            +   +A   L +G   
Sbjct: 125 GLVYALLGERDKAEASLKQALA----LEDTPE------------IRSALAELYLSMGRLD 168

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEM 294
           +++    K L+  P  +    R   A +  G+ EEA R   +
Sbjct: 169 EALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL 210

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 49.8 bits (120), Expect = 3e-07
 Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 26/112 (23%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
           G +L+  G+++ A   +E+ L+     NPQD E               +A   LKLG   
Sbjct: 12  GVQLYALGRYDAALTLFERALK----ENPQDPE-----------ALYWLARTQLKLGLVN 56

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMAL-----------GEFEEAQRDFE 293
            ++E    ++   P ++ G      AY+AL           G  E+A    +
Sbjct: 57  PALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLK 108

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 48.7 bits (117), Expect = 8e-07
 Identities = 16/105 (15%), Positives = 33/105 (31%), Gaps = 12/105 (11%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDE----EGKVFVGKRNLLHLNVAACLLKL 248
                K G    A    + ++       P+         + +V     L+          
Sbjct: 46  ARTQLKLGLVNPALENGKTLVA----RTPRYLGGYMVLSEAYVA----LYRQAEDRERGK 97

Query: 249 GECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
           G   +++         NP +     +RG+ Y  LGE ++A+   +
Sbjct: 98  GYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLK 142

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 47.1 bits (113), Expect = 2e-06
 Identities = 21/108 (19%), Positives = 35/108 (32%), Gaps = 16/108 (14%)

Query: 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACL 245
               R   +R   +G  E A +  +   R    VNP+              LHL      
Sbjct: 84  VALYRQAEDRERGKGYLEQALSVLKDAER----VNPRYAP-----------LHLQRGLVY 128

Query: 246 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
             LGE  K+  +  + L       +        Y+++G  +EA   + 
Sbjct: 129 ALLGERDKAEASLKQALALED-TPEIRSALAELYLSMGRLDEALAQYA 175

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 43.7 bits (104), Expect = 4e-05
 Identities = 12/56 (21%), Positives = 20/56 (35%)

Query: 238 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
            L +   L  LG    ++    + L  NP   + LY      + LG    A  + +
Sbjct: 8   PLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGK 63

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A Length = 224

 Score = 51.7 bits (124), Expect = 7e-08
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 13/109 (11%)

Query: 62  IRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGF 121
           +  GKGE P D       + V+YKG L++   K F D      G+PL F      V  G+
Sbjct: 128 VEAGKGEAPKD----SDTVVVNYKGTLID--GKEF-DNSYTR-GEPLSFRLDG--VIPGW 177

Query: 122 EMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFE 169
              ++ +  G    +  PP+ AY K       +P  + + +++ELL  +
Sbjct: 178 TEGLKNIKKGGKIKLVIPPELAYGK--AGVPGIPPNSTLVFDVELLDVK 224

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 49.3 bits (118), Expect = 9e-08
 Identities = 19/94 (20%), Positives = 30/94 (31%), Gaps = 12/94 (12%)

Query: 200 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN 259
           G    A   YEK +   + +  +D  E           +L + +    LGE RK+     
Sbjct: 4   GLEAQAVPYYEKAIA--SGLQGKDLAEC----------YLGLGSTFRTLGEYRKAEAVLA 51

Query: 260 KVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
             +   P H        M    LG +E+      
Sbjct: 52  NGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLL 85

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 16/90 (17%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
           G+     G++  A+A     ++ F    P               L +  A  L  LG   
Sbjct: 34  GSTFRTLGEYRKAEAVLANGVKQF----PNHQA-----------LRVFYAMVLYNLGRYE 78

Query: 253 KSIEACNKVLDANPAHVK-GLYRRGMAYMA 281
           + +E   K++           Y++ + + A
Sbjct: 79  QGVELLLKIIAETSDDETIQSYKQAILFYA 108

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 50.2 bits (120), Expect = 2e-07
 Identities = 16/136 (11%), Positives = 44/136 (32%), Gaps = 22/136 (16%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE-- 250
           G     +  +  +   Y + L+    +  ++ E           L+  +A  L       
Sbjct: 51  GEYYLWQNDYSNSLLAYRQALQ----LRGENAE-----------LYAALATVLYYQASQH 95

Query: 251 -CRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATA- 308
              ++    +K L  +   +  L            + +A   ++ +M ++          
Sbjct: 96  MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLV 155

Query: 309 ---ALSKLKKQRQEVE 321
               ++KL ++R ++E
Sbjct: 156 ESINMAKLLQRRSDLE 171

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 52.0 bits (124), Expect = 2e-07
 Identities = 13/138 (9%), Positives = 29/138 (21%), Gaps = 19/138 (13%)

Query: 184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 243
           D+   I             +       +       + P                  +   
Sbjct: 258 DQVVAIASNIGGKQALETVQRLLPVLCQAHG----LTPDQVVA-----------IASHGG 302

Query: 244 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 303
               L   ++ +    +     P  V  +        AL   +           +     
Sbjct: 303 GKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLT---- 358

Query: 304 PDATAALSKLKKQRQEVE 321
           PD   A++     +Q +E
Sbjct: 359 PDQVVAIASNGGGKQALE 376

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 51.2 bits (122), Expect = 4e-07
 Identities = 11/138 (7%), Positives = 27/138 (19%), Gaps = 19/138 (13%)

Query: 184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 243
            +   I             +       +         P                  +   
Sbjct: 597 VQVVAIASNIGGKQALETVQRLLPVLCQAHGL----TPAQVV-----------AIASHDG 641

Query: 244 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 303
               L   ++ +    +     P  V  +   G    AL   +           +     
Sbjct: 642 GKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLT---- 697

Query: 304 PDATAALSKLKKQRQEVE 321
            +   A++     +Q +E
Sbjct: 698 QEQVVAIASNNGGKQALE 715

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 50.0 bits (119), Expect = 1e-06
 Identities = 12/138 (8%), Positives = 28/138 (20%), Gaps = 19/138 (13%)

Query: 184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 243
            +   I             +       +       + P                  +   
Sbjct: 190 AQVVAIASNNGGKQALETVQRLLPVLCQAHG----LTPAQVVA-----------IASHDG 234

Query: 244 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 303
               L   ++ +    +     P  V  +        AL   +           +     
Sbjct: 235 GKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLT---- 290

Query: 304 PDATAALSKLKKQRQEVE 321
           PD   A++     +Q +E
Sbjct: 291 PDQVVAIASHGGGKQALE 308

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 49.3 bits (117), Expect = 2e-06
 Identities = 13/128 (10%), Positives = 27/128 (21%), Gaps = 19/128 (14%)

Query: 184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 243
           D+   I   G         +       +       + P                  +   
Sbjct: 292 DQVVAIASHGGGKQALETVQRLLPVLCQAHG----LTPDQVV-----------AIASHDG 336

Query: 244 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 303
               L   ++ +    +     P  V  +   G    AL   +           +     
Sbjct: 337 GKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLT---- 392

Query: 304 PDATAALS 311
           PD   A++
Sbjct: 393 PDQVVAIA 400

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 49.3 bits (117), Expect = 2e-06
 Identities = 8/110 (7%), Positives = 19/110 (17%), Gaps = 15/110 (13%)

Query: 184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 243
           D+   I   G         +       +       + P                  +   
Sbjct: 529 DQVVAIASNGGGKQALETVQRLLPVLCQAHG----LTPDQVVA-----------IASNGG 573

Query: 244 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
               L   ++ +    +        V  +        AL   +       
Sbjct: 574 GKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLC 623

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 48.5 bits (115), Expect = 3e-06
 Identities = 11/138 (7%), Positives = 27/138 (19%), Gaps = 19/138 (13%)

Query: 184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 243
            +   I             +       +       + P                  +   
Sbjct: 631 AQVVAIASHDGGKQALETVQRLLPVLCQAHG----LTPDQVVA-----------IASNGG 675

Query: 244 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 303
               L   ++ +    +        V  +        AL   +           +     
Sbjct: 676 GKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLT---- 731

Query: 304 PDATAALSKLKKQRQEVE 321
           PD   A++     +Q +E
Sbjct: 732 PDQVVAIASNGGGKQALE 749

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.5 bits (102), Expect = 1e-04
 Identities = 14/142 (9%), Positives = 32/142 (22%), Gaps = 19/142 (13%)

Query: 184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 243
           D+   I   G         +       +       +  +                 +   
Sbjct: 665 DQVVAIASNGGGKQALETVQRLLPVLCQAHG----LTQEQVVA-----------IASNNG 709

Query: 244 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 303
               L   ++ +    +     P  V  +   G    AL   +           +     
Sbjct: 710 GKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLT---- 765

Query: 304 PDATAALSKLKKQRQEVESKAR 325
           P    A++     +Q +E+  R
Sbjct: 766 PAQVVAIASNIGGKQALETVQR 787

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 9/110 (8%), Positives = 20/110 (18%), Gaps = 16/110 (14%)

Query: 184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 243
           D+   I   G         +       +       + P                  +   
Sbjct: 360 DQVVAIASNGGGKQALETVQRLLPVLCQAHG----LTPDQVV-----------AIASNGG 404

Query: 244 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
               L   ++ +    +     P  V  +        AL   +       
Sbjct: 405 -KQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLC 453

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 41.2 bits (96), Expect = 7e-04
 Identities = 6/56 (10%), Positives = 14/56 (25%)

Query: 238 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
             +       L   ++ +    +     PA V  +        AL   ++      
Sbjct: 432 IASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLC 487

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 40.8 bits (95), Expect = 7e-04
 Identities = 7/110 (6%), Positives = 17/110 (15%), Gaps = 15/110 (13%)

Query: 184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 243
            +   I             +       +                            +   
Sbjct: 461 AQVVAIASHDGGKQALETVQQLLPVLCQAHG-LTPDQVV--------------AIASNIG 505

Query: 244 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
               L   ++ +    +     P  V  +   G    AL   +       
Sbjct: 506 GKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLC 555

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 51.2 bits (122), Expect = 3e-07
 Identities = 16/138 (11%), Positives = 34/138 (24%), Gaps = 23/138 (16%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLH-LNVAACLLKLGEC 251
           G   +K+G    A   +   L                      +L  L   +        
Sbjct: 144 GEVYWKKGDVTSAHTCFSGALTH----CKNKV----SLQNLSMVLRQLQTDSGDEHSRHV 195

Query: 252 RKSIEACNKVLDANPAHVKGLYRRGMAYMA--------LGEFEEAQRDFEMMMKVDKSSE 303
             S+      +  +    +  Y  G AY++            ++A   +    KVD+ + 
Sbjct: 196 MDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255

Query: 304 PDATA------ALSKLKK 315
            +              + 
Sbjct: 256 SNPDLHLNRATLHKYEES 273

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 48.5 bits (115), Expect = 2e-06
 Identities = 13/96 (13%), Positives = 28/96 (29%), Gaps = 16/96 (16%)

Query: 199 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE-CRKSIEA 257
           + + E    + E+VL         + +             +     L    +   ++   
Sbjct: 81  QEEMEKTLQQMEEVLGS----AQVEAQ-----------ALMLKGKALNVTPDYSPEAEVL 125

Query: 258 CNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
            +K +   P  V+   + G  Y   G+   A   F 
Sbjct: 126 LSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 13/100 (13%), Positives = 27/100 (27%), Gaps = 12/100 (12%)

Query: 194 NRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRK 253
           N        + A + Y +  +  +     + +           LHLN A          +
Sbjct: 229 NTGQNPKISQQALSAYAQAEK-VDRKASSNPD-----------LHLNRATLHKYEESYGE 276

Query: 254 SIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
           ++E  ++    +PA  +   R       L           
Sbjct: 277 ALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 8e-07
 Identities = 72/466 (15%), Positives = 129/466 (27%), Gaps = 151/466 (32%)

Query: 41  ELVHLIQVRDMLGDGRLIKRRIRDGKGE-----FPMDCPLHD------SLLCVHYKGMLL 89
           E+ H+I  +D +     +   +   K E     F ++  L        S +    +   +
Sbjct: 50  EIDHIIMSKDAVSGTLRLFWTLLS-KQEEMVQKF-VEEVLRINYKFLMSPIKTEQRQPSM 107

Query: 90  NEEKKVFYDTRVDNDGQP-------------------LEFSSGEGLVPEG---------- 120
                +    R+ ND Q                    LE    + ++ +G          
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167

Query: 121 FEMC----VRLMLPGEI-----ALVTCPPD---------YAYDKFL-----RPANVPEGA 157
            ++C    V+  +  +I          P           Y  D          +N+    
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227

Query: 158 H-IQWEIELLGFEKP-----------KDWTGL-SFD------------GIMDEAEKIRVT 192
           H IQ E+  L   KP           ++     +F+             + D       T
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDD-EEGKVFVGKRNLLHLNVAACLLKLGEC 251
              L       L   + + +L  +    PQD   E        N   L++ A  ++ G  
Sbjct: 288 HISL-DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL----TTNPRRLSIIAESIRDGLA 342

Query: 252 R-------------KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 298
                           IE+   VL+  PA  + ++        L  F        +   +
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLE--PAEYRKMFD------RLSVFPP---SAHIPTIL 391

Query: 299 DKSSEPDATAALSKL--KKQRQEVESKARK-QFKGLFDKKPGEISEVGIENQGEDQAAGK 355
                      LS +     + +V     K     L +K+P E S + I +   +    K
Sbjct: 392 -----------LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE-STISIPSIYLELKV-K 438

Query: 356 NENDDSEQESDGDEAQEFHEAAAEA---PRKGCSTAFGLPVED-YF 397
            EN+              H +  +    P+   S     P  D YF
Sbjct: 439 LENE-----------YALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 46.6 bits (111), Expect = 9e-07
 Identities = 13/117 (11%), Positives = 33/117 (28%), Gaps = 20/117 (17%)

Query: 205 AKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 264
              + E +L         +             L   +     +  +   ++      LD 
Sbjct: 4   ITERLEAMLA----QGTDNML-----------LRFTLGKTYAEHEQFDAALPHLRAALDF 48

Query: 265 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV-----DKSSEPDATAALSKLKKQ 316
           +P +       G      G+   A++ +E  +       D+    +    L +L ++
Sbjct: 49  DPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLARE 105

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 45.3 bits (108), Expect = 2e-06
 Identities = 11/65 (16%), Positives = 27/65 (41%)

Query: 236 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMM 295
                +A   LK     +++    ++++ +P +V   Y  G  Y  L   ++A   +   
Sbjct: 8   FTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67

Query: 296 MKVDK 300
           ++V +
Sbjct: 68  IEVAR 72

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 9/100 (9%), Positives = 25/100 (25%), Gaps = 17/100 (17%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
                K      A A +E+++      +P                + ++     +L    
Sbjct: 14  AQEHLKHDNASRALALFEELVE----TDPDYVG-----------TYYHLGKLYERLDRTD 58

Query: 253 KSIEACNKVLDANPAHVKGLYRRGM--AYMALGEFEEAQR 290
            +I+   + ++             +  A +     E    
Sbjct: 59  DAIDTYAQGIEVAREEGTQKDLSELQDAKLKAEGLEHHHH 98

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 43.9 bits (104), Expect = 6e-06
 Identities = 16/78 (20%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 238 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLY-RRGMAYMALGEFEEAQRDFEMMM 296
            L     L+  G+   +++A  + L   P      Y   G AY  LG++++A  +++  +
Sbjct: 3   QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62

Query: 297 KVDKSSEPDATAALSKLK 314
           +++    PD+ A  ++  
Sbjct: 63  ELN----PDSPALQARKM 76

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 14/75 (18%)

Query: 192 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC 251
           T   L  +G  E A    E+ L+      P   +E           +  +     KLG+ 
Sbjct: 6   TIKELINQGDIENALQALEEFLQ----TEPVGKDE----------AYYLMGNAYRKLGDW 51

Query: 252 RKSIEACNKVLDANP 266
           +K++      ++ NP
Sbjct: 52  QKALNNYQSAIELNP 66

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 46.5 bits (110), Expect = 9e-06
 Identities = 18/147 (12%), Positives = 42/147 (28%), Gaps = 14/147 (9%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEE----GKVFVGKRNLLHLNVAACLLKL 248
                ++ + + A    +K L       P +       G  +  K   +       +   
Sbjct: 254 AKFYRRKDEPDKAIELLKKALE----YIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGK 309

Query: 249 GEC----RKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP 304
            +       ++    K  +AN    +        +    ++EEA+  F+     + +   
Sbjct: 310 RKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVA 369

Query: 305 DATAALS--KLKKQRQEVESKARKQFK 329
                L     +  + + E KA   F 
Sbjct: 370 KQLLHLRYGNFQLYQMKCEDKAIHHFI 396

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori} Length = 151

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 27/137 (19%), Positives = 49/137 (35%), Gaps = 23/137 (16%)

Query: 82  VHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPD 141
           + Y+     +   +  D+ +    +PLEF  G   +  G E  V     GE   V   P+
Sbjct: 15  IEYEVRE--QGSSIVLDSNIS--KEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPE 70

Query: 142 YAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGK 201
            AY  +   + +        E+    FE  +   G+S  G  ++ + I+           
Sbjct: 71  EAYGVY-ESSYL-------QEVPRDQFEGIELEKGMSVFGQTEDNQTIQAI--------- 113

Query: 202 FELAKAKYEKVLRDFNH 218
             +       V+ D+NH
Sbjct: 114 --IKDFSATHVMVDYNH 128

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 42.0 bits (100), Expect = 2e-05
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 15/91 (16%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
           GN  +K+G ++ A   Y+K L     ++P + E              N+     K G+  
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALE----LDPNNAE-----------AWYNLGNAYYKQGDYD 60

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALG 283
           ++IE   K L+ +P + +     G A    G
Sbjct: 61  EAIEYYQKALELDPNNAEAKQNLGNAKQKQG 91

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 39.7 bits (94), Expect = 1e-04
 Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 10/74 (13%)

Query: 220 NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAY 279
           +P +  E             N+     K G+  ++IE   K L+ +P + +  Y  G AY
Sbjct: 4   DPGNSAEA----------WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 53

Query: 280 MALGEFEEAQRDFE 293
              G+++EA   ++
Sbjct: 54  YKQGDYDEAIEYYQ 67

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Length = 129

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 21/125 (16%), Positives = 41/125 (32%), Gaps = 16/125 (12%)

Query: 196 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSI 255
             K GK++ A     ++   F  + P                   +          + + 
Sbjct: 12  ALKNGKYDDA----SQLFLSFLELYPNGVYTPNA--------LYWLGESYYATRNFQLAE 59

Query: 256 EACNKVLDANPAHVK---GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 312
                ++   P H K   GL + G++    G+  EAQ+  + +      S+  A  A  +
Sbjct: 60  AQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDA-ARVAQER 118

Query: 313 LKKQR 317
           L+  R
Sbjct: 119 LQSIR 123

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli} Length = 169

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 77  DSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALV 136
           +S + VH+   L  ++      TR  N+G+P  F  G+  + EG E  +  +  G+    
Sbjct: 28  NSAVLVHFTLKL--DDGTTAESTR--NNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTF 83

Query: 137 TCPPDYAY 144
           +  PD A+
Sbjct: 84  SLEPDAAF 91

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 44.5 bits (105), Expect = 3e-05
 Identities = 29/206 (14%), Positives = 62/206 (30%), Gaps = 27/206 (13%)

Query: 181 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLN 240
           G  D A        +L +      A   Y++    F      ++EE      +   L   
Sbjct: 110 GTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVF------ENEERLRQAAE---LIGK 160

Query: 241 VAACLLKLGECRKSIEACNKVLDAN------PAHVKGLYRRGMAYMALGEFEEAQRDFEM 294
            +  L++  +  ++  +  K           P   K    + +  +   ++  AQ+    
Sbjct: 161 ASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220

Query: 295 MMKVDKSSEPDATAALSKL----KKQRQEVESKARKQFKGLFDKKPGEISE------VGI 344
              +   S  +  AAL  L     +Q +E   +  +    L      + ++      V  
Sbjct: 221 SYSIPGFSGSEDCAALEDLLQAYDEQDEEQLLRVCRS--PLVTYMDNDYAKLAISLKVPG 278

Query: 345 ENQGEDQAAGKNENDDSEQESDGDEA 370
              G+ + +        E+E D    
Sbjct: 279 GGGGKKKPSASASAQPQEEEDDEYAG 304

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 25/200 (12%), Positives = 57/200 (28%), Gaps = 34/200 (17%)

Query: 200 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN 259
           G        ++   +  +  +               L        L   G+CR  +    
Sbjct: 22  GSGGGGTNSHDGNSQQGSGSDGGSSM---------CLELALEGERLCNAGDCRAGVAFFQ 72

Query: 260 KVL----DANPAHVKGLYRRGMAYMALGEFEEA----QRDFEMMMKV-DKSSEPDATA-- 308
             +    +          + G AY  LG++ +A    + D  +   + D+  E  A +  
Sbjct: 73  AAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE--AKSSG 130

Query: 309 ----ALSKLKKQRQEVES--KARKQFKGLFDKKPGE---ISEVGI--ENQGEDQAAGKNE 357
                L  + +  +      +     + L D+   E   +  +G     +G+        
Sbjct: 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDR-LSEGRALYNLGNVYHAKGKHLGQRNPG 189

Query: 358 NDDSEQESDGDEAQEFHEAA 377
               + +     A EF++  
Sbjct: 190 KFGDDVKEALTRAVEFYQEN 209

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 18/116 (15%), Positives = 35/116 (30%), Gaps = 17/116 (14%)

Query: 184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 243
               ++ + G RL K G      + +E  ++        +D +         +    +  
Sbjct: 7   ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-----TEDLK-----TLSAIYS-QLGN 55

Query: 244 CLLKLGECRKSIEACNKVLDA------NPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
               L +  K++E  +  L             K     G     LG F+EA    +
Sbjct: 56  AYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQ 111

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1 Length = 151

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 9/77 (11%)

Query: 77  DSLLCVHYKGMLLN---------EEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRL 127
              + V Y G L +         E  K       D + +PLEF  GEG + +GFE  V  
Sbjct: 5   GVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLD 64

Query: 128 MLPGEIALVTCPPDYAY 144
           M  G+   V  P + AY
Sbjct: 65  MEVGDEKTVKIPAEKAY 81

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli} Length = 171

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 5/68 (7%)

Query: 77  DSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALV 136
           D ++ + Y+     E+  +  ++       PL++  G G +  G E  +     G+   V
Sbjct: 6   DLVVSLAYQVRT--EDGVLVDESP---VSAPLDYLHGHGSLISGLETALEGHEVGDKFDV 60

Query: 137 TCPPDYAY 144
               + AY
Sbjct: 61  AVGANDAY 68

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli} Length = 196

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 5/69 (7%)

Query: 76  HDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIAL 135
            D ++ + Y+    +    +  ++       PL++  G G +  G E  +     G+   
Sbjct: 5   KDLVVSLAYQVRTEDGV--LVDESP---VSAPLDYLHGHGSLISGLETALEGHEVGDKFD 59

Query: 136 VTCPPDYAY 144
           V    + AY
Sbjct: 60  VAVGANDAY 68

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282

 Score = 40.9 bits (95), Expect = 4e-04
 Identities = 19/105 (18%), Positives = 30/105 (28%), Gaps = 7/105 (6%)

Query: 208 KYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLL-KLGECRKSIEACNKVLDANP 266
           ++  V+          D+    F+     +   VAA  L    E  + +   N       
Sbjct: 150 RWTDVIDQVKSAGKWPDK----FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEA 205

Query: 267 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS 311
                 +   MA  + G    A    E +       EP   AAL 
Sbjct: 206 CARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAALK 248

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176

 Score = 39.6 bits (92), Expect = 7e-04
 Identities = 15/89 (16%), Positives = 32/89 (35%)

Query: 239 LNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 298
           L   + LL+ GE  +++     + D   +       +    +   +FE AQ     +   
Sbjct: 10  LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE 69

Query: 299 DKSSEPDATAALSKLKKQRQEVESKARKQ 327
            + +   +  A  +L +Q  E     R +
Sbjct: 70  YQDNSYKSLIAKLELHQQAAESPELKRLE 98

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 40.3 bits (95), Expect = 7e-04
 Identities = 17/115 (14%), Positives = 32/115 (27%), Gaps = 17/115 (14%)

Query: 185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC 244
              ++ + G RL K G      + +E  ++                     +    +   
Sbjct: 4   SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLK----------TLSAIYS-QLGNA 52

Query: 245 LLKLGECRKSIEACNKVLDA------NPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
              L +  K++E  +  L             K     G     LG F+EA    +
Sbjct: 53  YFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQ 107

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	414
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	100.0
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	100.0
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	100.0
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	100.0
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.97
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	99.97
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	99.97
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.9
2lkn_A	165	AH receptor-interacting protein; FKBP-type domain,	99.9
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	99.89
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.88
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	99.88
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.88
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	99.88
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	99.87
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	99.87
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	99.86
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	99.86
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	99.86
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	99.85
2ppn_A	107	FK506-binding protein 1A; high resolution protein	99.85
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	99.84
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	99.84
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	99.84
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	99.83
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	99.83
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.83
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.82
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	99.81
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	99.81
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	99.8
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.8
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	99.79
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	99.78
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	99.78
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.75
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.74
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.71
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.66
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.64
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.6
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.6
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.6
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.57
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.57
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.54
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.53
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.52
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.51
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.5
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.49
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.48
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.48
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.48
1hxv_A	113	Trigger factor; FKBP fold, ppiase, chaperone; NMR	99.48
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.47
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.47
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.46
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	99.46
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.46
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.44
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.44
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.43
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.42
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.42
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.4
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.39
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.38
3prb_A	231	FKBP-type peptidyl-prolyl CIS-trans isomerase; cha	99.37
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.37
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.36
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.36
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	99.36
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.35
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.35
3pr9_A	157	FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB	99.34
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.32
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.31
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.3
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	99.3
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.3
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	99.3
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.29
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.27
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.27
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.27
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.27
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.26
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.25
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.25
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	99.24
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.22
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.22
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.21
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.2
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.19
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.18
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.18
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.18
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.18
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.17
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.17
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.17
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.16
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.16
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.15
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.14
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.14
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.14
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.14
3cgm_A	158	SLYD, peptidyl-prolyl CIS-trans isomerase; chapero	99.13
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.12
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.12
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.12
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.11
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.1
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.09
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.09
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.09
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.09
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.08
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.08
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.08
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.06
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.06
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.06
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.06
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.06
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.04
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.04
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.04
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.03
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.03
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	99.02
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.01
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.01
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.01
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.01
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.01
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.01
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.0
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.99
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.99
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.98
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.97
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.96
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.95
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.95
1w26_A	432	Trigger factor, TF; chaperone, protein folding, ri	98.95
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.93
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.92
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.92
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.92
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	98.91
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.91
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.88
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.87
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.86
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.86
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.85
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.85
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.84
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.84
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	98.84
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	98.84
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.84
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.84
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.83
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.82
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.82
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.82
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	98.81
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.8
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.8
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	98.79
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.78
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	98.78
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.77
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.77
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.76
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	98.76
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.76
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.76
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.76
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.75
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	98.75
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	98.75
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.75
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	98.75
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.75
1t11_A	392	Trigger factor, TF; helix-turn-helix, four-helix-b	98.74
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	98.74
2ppn_A	107	FK506-binding protein 1A; high resolution protein	98.73
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	98.72
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.72
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.71
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.71
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	98.7
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.69
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.68
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.68
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.68
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	98.67
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.67
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.67
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	98.66
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	98.66
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.66
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.65
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.64
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.64
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.63
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.6
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.59
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.57
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.57
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	98.56
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.56
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.54
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.53
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.53
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.53
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.53
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.5
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.5
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.49
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.49
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.48
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.47
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.46
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.43
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.43
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.43
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.42
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.39
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.37
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.35
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.33
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.28
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.26
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.25
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.23
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.21
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.15
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.1
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.07
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.06
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	98.0
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.87
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.86
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.86
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.84
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.82
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	97.8
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.79
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.74
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.71
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.7
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.64
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.62
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.58
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.55
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.5
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.49
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.26
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	97.21
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.09
2lkn_A	165	AH receptor-interacting protein; FKBP-type domain,	97.07
3gty_X	433	Trigger factor, TF; chaperone-client complex, cell	96.97
1hxv_A	113	Trigger factor; FKBP fold, ppiase, chaperone; NMR	96.94
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	96.88
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.58
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	96.5
3prb_A	231	FKBP-type peptidyl-prolyl CIS-trans isomerase; cha	96.36
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.3
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.28
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.04
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	95.97
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	95.84
3cgm_A	158	SLYD, peptidyl-prolyl CIS-trans isomerase; chapero	95.56
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	95.42
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.4
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	95.14
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	95.13
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	94.84
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	94.77
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	94.74
3pr9_A	157	FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB	94.73
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	94.65
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	94.44
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	94.0
1w26_A	432	Trigger factor, TF; chaperone, protein folding, ri	93.58
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	93.43
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	92.71
3mv2_A	325	Coatomer subunit alpha; vesicular membrane coat CO	92.69
3mkr_B	320	Coatomer subunit alpha; tetratricopeptide repeats	92.58
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	92.34
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	90.92
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	90.13
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	89.9
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	87.6
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	87.42
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	86.82
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	86.78
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	85.34
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	84.59
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	83.9
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	83.69
1t11_A	392	Trigger factor, TF; helix-turn-helix, four-helix-b	83.68
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	82.58
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	82.26

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=100.00  E-value=1.8e-48  Score=394.70  Aligned_cols=323  Identities=28%  Similarity=0.488  Sum_probs=284.3

Q ss_pred             ccccCCcCcEEEEEEcCCCcCCCC-CCCCCCCCCeeeEEEEeeEEEeeeeecCCCceEEEEeecccCCCCCCCCCCCCeE
Q 015006            2 GIGTMTREEKAVIYVTSQYLTPSP-LMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLL   80 (414)
Q Consensus         2 ~~~~m~~Ge~~~~~i~~~~~~g~~-~~~~ip~~~~l~~~vel~~~~~~~dv~~dg~~~k~i~~~G~g~~~~~~p~~~~~v   80 (414)
                      ||.+|++||++.|+|||++|||.. .+|.||+|++|+|+|+|++|.. .|++.||+++++++++|.|.   .+|..|+.|
T Consensus        93 ~l~~m~~Ge~~~~~i~~~~~yg~~g~~~~i~~~~~l~~~v~l~~~~~-~~~~~dg~~~k~i~~~g~~~---~~p~~g~~V  168 (457)
T 1kt0_A           93 GVATMKRGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKG-EDLFEDGGIIRRTKRKGEGY---SNPNEGATV  168 (457)
T ss_dssp             HHTTCCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC-EETTSSSSEEEEEEECCBCS---CCCCTTCEE
T ss_pred             HHhhCCCCCEEEEEEChHHhccccCCCCCCCCCCcEEEEEeeceeec-ccccCCcceEEEEEecCCCC---CCCCCCCEE
Confidence            789999999999999999999984 5689999999999999999975 58899999999999999986   457899999


Q ss_pred             EEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCC---chHHHHHHhhhcCCCCeEEEEecCCCccccCCCC-CCCCCC
Q 015006           81 CVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL---VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRP-ANVPEG  156 (414)
Q Consensus        81 ~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~---v~~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~-~~ip~~  156 (414)
                      +|||+|++ +  |++| +++      +++|.+|+|.   ++++|+.|+..|+.||++.|.++|.++|+..|.. ..||++
T Consensus       169 ~v~y~g~~-~--g~~f-~~~------~~~f~~g~g~~~~v~~~~e~al~~~~~ge~~~l~i~P~~ay~~~g~~~~~ip~~  238 (457)
T 1kt0_A          169 EIHLEGRC-G--GRMF-DCR------DVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPN  238 (457)
T ss_dssp             EEEEEEEE-T--TEEE-EEE------EEEEETTCGGGGTCCHHHHHHHTTCCBTCEEEEEECGGGTTCSSCBGGGTBCTT
T ss_pred             EEEEEEEe-C--CeEE-ecC------ceEEEeCCCccccCChHHHHHHHhCCCCCEEEEEECcccccCCCCCcccCCCCC
Confidence            99999998 4  8887 442      5999999874   8999999999999999999999999999999875 369999


Q ss_pred             cceEEEEEEcccCCCCCCCCCchhhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhH
Q 015006          157 AHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNL  236 (414)
Q Consensus       157 ~~l~~eieL~~~~~~~~~~~~~~~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~  236 (414)
                      +.+.|.+.+..+......+.+........+..++..|+.+++.|+|.+|+..|.+|+.+........+++......+...
T Consensus       239 ~~l~y~~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~  318 (457)
T 1kt0_A          239 AELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLA  318 (457)
T ss_dssp             CCEEEEEEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHH
T ss_pred             CEEEEEhhhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHH
Confidence            99999999999999888889999999999999999999999999999999999999996554333334556667778889


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 015006          237 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  316 (414)
Q Consensus       237 ~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~  316 (414)
                      +|+|+|.||+++++|++|+.+|++||+++|+++++||++|.+|+.+|+|++|+.+|++|++++|++ ..+...+..+...
T Consensus       319 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~-~~a~~~l~~~~~~  397 (457)
T 1kt0_A          319 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN-KAARLQISMCQKK  397 (457)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999998 6899999999999


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCc
Q 015006          317 RQEVESKARKQFKGLFDKKPGEI  339 (414)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~  339 (414)
                      +.+..++++..+++||.+.....
T Consensus       398 ~~~~~~a~~~~~~~~f~k~~~~d  420 (457)
T 1kt0_A          398 AKEHNERDRRIYANMFKKFAEQD  420 (457)
T ss_dssp             HHHHHHHHHHHHHHC--------
T ss_pred             HHHHHHHHHHHHHHHHhhhhhcc
Confidence            99999999999999998765543

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=100.00  E-value=6.6e-42  Score=333.25  Aligned_cols=273  Identities=30%  Similarity=0.465  Sum_probs=205.1

Q ss_pred             CceEEEEeecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCC-CchHHHHHHhhhcCCCCe
Q 015006           55 GRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEG-LVPEGFEMCVRLMLPGEI  133 (414)
Q Consensus        55 g~~~k~i~~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~-~v~~gle~~l~~M~~GE~  133 (414)
                      ++|.++|+++|.|..    |..|+.|+|||+|++.+ +|++| ++++. +++|++|.+|.| .+++||+.+|.+|++||+
T Consensus        49 ~~~~~~~~~~g~g~~----~~~gd~v~v~y~g~~~~-~g~~f-d~~~~-~~~~~~~~lg~~~~~i~g~e~~l~~m~~Ge~  121 (338)
T 2if4_A           49 EKVSKQIIKEGHGSK----PSKYSTCFLHYRAWTKN-SQHKF-EDTWH-EQQPIELVLGKEKKELAGLAIGVASMKSGER  121 (338)
T ss_dssp             TTEEEEEEECCBSCC----CCTTCEEEEEEEEEETT-TCCCC-EEHHH-HTCCEEEETTSCCGGGHHHHHHHHHCCBTCE
T ss_pred             CCeEEEEEeCCCCCC----CCCCCEEEEEEEEEEcC-CCcEe-ecccC-CCCCeEEEcCCCCcccHHHHHHHhcCCCCCe
Confidence            479999999999974    46899999999999865 48888 55443 468999999999 899999999999999999


Q ss_pred             EEEEecCCCccccCCC--CCCCCCCcceEEEEEEcccCCCC---CCCCCchhhhhHHHHHHHhhhccccccccHHHHHHH
Q 015006          134 ALVTCPPDYAYDKFLR--PANVPEGAHIQWEIELLGFEKPK---DWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAK  208 (414)
Q Consensus       134 ~~v~i~~~~~yg~~~~--~~~ip~~~~l~~eieL~~~~~~~---~~~~~~~~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~  208 (414)
                      +.|+|||.++||..+.  .+.||+++++.|.|+|+++....   ..|.++.+++...+..++..|+.+++.|+|.+|+..
T Consensus       122 ~~~~i~~~~~yg~~~~~~~~~ip~~~~l~f~v~L~~~~~~~e~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~  201 (338)
T 2if4_A          122 ALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQ  201 (338)
T ss_dssp             EEEEECGGGSSCSSCCCSSSCCCTTCCEEEEEEEEEEECCCCCBTTTBCCHHHHHHHHHHHHHHHHHTCSSSCCHHHHHH
T ss_pred             EEEEECHHHhcCCCCCCCCCCCCCCCcEEEEEEEEEecCCccccccccCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            9999999999999987  36899999999999999987644   467889999999999999999999999999999999


Q ss_pred             HHHHHhhcccCCCCCh------HHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 015006          209 YEKVLRDFNHVNPQDD------EEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMAL  282 (414)
Q Consensus       209 Y~~al~~~~~~~p~~~------~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l  282 (414)
                      |.+|+.+.    |.+.      ........+...+|+|+|.||+++++|.+|+.+|.++|+++|+++++||++|.+|..+
T Consensus       202 y~~Al~~~----p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~  277 (338)
T 2if4_A          202 YEMAIAYM----GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAEL  277 (338)
T ss_dssp             HHHHHHHS----CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHh----ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            99999943    3221      1122334445579999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCc
Q 015006          283 GEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPGEI  339 (414)
Q Consensus       283 ~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (414)
                      |+|++|+.+|++|++++|++ ..++..|..+........++++..|+++|...+...
T Consensus       278 g~~~~A~~~l~~al~l~p~~-~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~  333 (338)
T 2if4_A          278 GQMDSARDDFRKAQKYAPDD-KAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGG  333 (338)
T ss_dssp             TCHHHHHHHHHHTTC------------------------------------------
T ss_pred             CCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence            99999999999999999998 789999999988888888888899999998766543

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=100.00  E-value=5e-38  Score=305.56  Aligned_cols=277  Identities=29%  Similarity=0.496  Sum_probs=245.3

Q ss_pred             eeeeecCCCceEEEEeecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCC---chHHHHH
Q 015006           47 QVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL---VPEGFEM  123 (414)
Q Consensus        47 ~~~dv~~dg~~~k~i~~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~---v~~gle~  123 (414)
                      .+.|+++||+|+|+|+++|.|.   .+|..|+.|+|||+|++ +  |++| |++      |++|.+|.|.   ++++|+.
T Consensus        17 ~~~~~~~~~~~~~~~~~~g~g~---~~p~~~~~v~v~y~g~~-~--g~~f-d~~------~~~f~lG~g~~~~~~~~~e~   83 (336)
T 1p5q_A           17 RGSHMEEDGGIIRRIQTRGEGY---AKPNEGAIVEVALEGYY-K--DKLF-DQR------ELRFEIGEGENLDLPYGLER   83 (336)
T ss_dssp             -----CCTTSEEEEEEECCCCS---CCCCTTCEEEEEEEEEE-T--TEEE-EEE------EEEEETTCGGGGTCCHHHHH
T ss_pred             cceeecCCCcEEEEEEeCCCCC---CCCCCCCeEEEEEEEEE-C--CEEE-ecC------CeEEEeCCCCccccchHHHH
Confidence            3467889999999999999996   34679999999999998 4  8888 443      7999999987   5899999


Q ss_pred             HhhhcCCCCeEEEEecCCCccccCCCCC-CCCCCcceEEEEEEcccCCCCCCCCCchhhhhHHHHHHHhhhccccccccH
Q 015006          124 CVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKF  202 (414)
Q Consensus       124 ~l~~M~~GE~~~v~i~~~~~yg~~~~~~-~ip~~~~l~~eieL~~~~~~~~~~~~~~~e~~~~a~~~k~~Gn~~fk~g~y  202 (414)
                      ||.+|++||++.|.|+|+++||..|... .||+++++.|++.|.++......+.+..+.....+..+...|+.+++.|+|
T Consensus        84 al~~~~~Ge~~~l~i~p~~ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~  163 (336)
T 1p5q_A           84 AIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKY  163 (336)
T ss_dssp             HHTTCCTTCEEEEEECTTTTTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred             HHhcCCCCCeEEEEECCccccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCH
Confidence            9999999999999999999999999765 699999999999999999988888888888888999999999999999999


Q ss_pred             HHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 015006          203 ELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMAL  282 (414)
Q Consensus       203 ~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l  282 (414)
                      .+|+..|.+|+.+.........+.......+...+|+|+|.||+++++|++|+.+|.+||+++|+++++++++|.+|..+
T Consensus       164 ~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~  243 (336)
T 1p5q_A          164 KQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAV  243 (336)
T ss_dssp             HHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence            99999999999965433222344556667777899999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 015006          283 GEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPG  337 (414)
Q Consensus       283 ~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (414)
                      |++++|+.+|++|++++|++ ..+...+..+...+.+..++++..|++||.+...
T Consensus       244 g~~~~A~~~~~~al~l~P~~-~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  297 (336)
T 1p5q_A          244 NDFELARADFQKVLQLYPNN-KAAKTQLAVCQQRIRRQLAREKKLYANMFERLAE  297 (336)
T ss_dssp             TCHHHHHHHHHHHHHHCSSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999998 6899999999999999999999999999976543

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A

Probab=100.00  E-value=5.6e-32  Score=264.34  Aligned_cols=163  Identities=31%  Similarity=0.499  Sum_probs=147.8

Q ss_pred             ccccCCcCcEEEEEEcCCCcCCCCCCC------CCCCCCeeeEEEEeeEEEeeeeecCCCceEEEEeecccCCCCCCCCC
Q 015006            2 GIGTMTREEKAVIYVTSQYLTPSPLMP------VVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPL   75 (414)
Q Consensus         2 ~~~~m~~Ge~~~~~i~~~~~~g~~~~~------~ip~~~~l~~~vel~~~~~~~dv~~dg~~~k~i~~~G~g~~~~~~p~   75 (414)
                      ||.+|++||+++|+|+|+||||+.+.|      .||||++|.|+|+|++|..+.|++.|++++++++++|.|.   .+|.
T Consensus       185 ~l~~m~~GE~~~~~v~p~~~yg~~G~~~~~~~~~ip~~~~l~~~vel~~~~~v~dv~~d~~~~~~i~~~g~g~---~~~~  261 (356)
T 3jxv_A          185 AVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEXEGY---ERPN  261 (356)
T ss_dssp             HHTTCCBTCEEEEEECGGGTTTTTCBCCCC--CCBCTTCCEEEEEEEEEEECEEEESTTCCEEEEEEECCBSS---CCCC
T ss_pred             HHhhCCCCCEEEEEEChHhhcCCCCCCcccccccCCCCcEEEEEEEEEEEecccccccccceeEEeeeccccc---CCCC
Confidence            789999999999999999999985432      5999999999999999999999999999999999999995   3468


Q ss_pred             CCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCCeEEEEecCCCccccCCC--CCCC
Q 015006           76 HDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLR--PANV  153 (414)
Q Consensus        76 ~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~--~~~i  153 (414)
                      .|+.|+|||+|++.|  |++|+++... +++|+.|.+|.+.+++||+.+|.+|++||++.|+|||.++||..+.  ...|
T Consensus       262 ~gd~V~v~y~g~l~d--G~~fd~~~~~-~~~p~~f~~G~g~~i~G~e~~l~gm~~Ge~~~v~ip~~~aYG~~~~~~~~~I  338 (356)
T 3jxv_A          262 EGAVVTVKITGKLQD--GTVFLKKGHD-EQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIV  338 (356)
T ss_dssp             TTCEEEEEEEEEESS--SCEEEEESCT-TSCCCEEETTTTSSCHHHHHHHTTCCBTCEEEEEECGGGTTTTSCEESSSEE
T ss_pred             CCCEEEEEEEEEECC--CCEEeecccc-CCcCEEEEECCCccchHHHHHHhCCCCCCEEEEEEChHHccCCCCcCCCCcC
Confidence            999999999999976  9999666444 5789999999999999999999999999999999999999998874  3579


Q ss_pred             CCCcceEEEEEEcccCC
Q 015006          154 PEGAHIQWEIELLGFEK  170 (414)
Q Consensus       154 p~~~~l~~eieL~~~~~  170 (414)
                      |+|++|+|+|+|++|.+
T Consensus       339 p~~~~l~f~vel~~~~~  355 (356)
T 3jxv_A          339 PPNSTVIYEVELVSFVK  355 (356)
T ss_dssp             CTTCCEEEEEEEEEEEC
T ss_pred             CcCCeEEEEEEEEEEEc
Confidence            99999999999998754

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.97  E-value=7.6e-31  Score=265.39  Aligned_cols=279  Identities=24%  Similarity=0.351  Sum_probs=175.0

Q ss_pred             eeeec--CCCceEEEEeecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHh
Q 015006           48 VRDML--GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCV  125 (414)
Q Consensus        48 ~~dv~--~dg~~~k~i~~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l  125 (414)
                      ..||+  .+++|.++|+++|.|..   +|..|+.|+|||+|++.+  |++| ++++. ++.|++|.+|.+.+++||+.+|
T Consensus        22 ~~~~~~~~~~g~~~~~~~~G~g~~---~~~~gd~v~v~y~~~~~~--g~~~-dss~~-~~~p~~~~~g~~~~i~g~~~~l   94 (457)
T 1kt0_A           22 GEDITSKKDRGVLKIVKRVGNGEE---TPMIGDKVYVHYKGKLSN--GKKF-DSSHD-RNEPFVFSLGKGQVIKAWDIGV   94 (457)
T ss_dssp             -----------CEEEC-----------CCCBTCEEEEEEEEEC-------C-BC-------CEEEETTSTTSCHHHHHHH
T ss_pred             cccccCCCCCcEEEEEEECCCCCC---CCCCCCEEEEEEEEEECC--CCEE-eccCC-CCCCeEEEeCCcchhhHHHHHH
Confidence            45777  78999999999999974   357899999999999855  9998 55554 5689999999999999999999


Q ss_pred             hhcCCCCeEEEEecCCCccccCCCCCCCCCCcceEEEEEEcccCCCCCC-CCCchhhhhHHHHH-------------H--
Q 015006          126 RLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDW-TGLSFDGIMDEAEK-------------I--  189 (414)
Q Consensus       126 ~~M~~GE~~~v~i~~~~~yg~~~~~~~ip~~~~l~~eieL~~~~~~~~~-~~~~~~e~~~~a~~-------------~--  189 (414)
                      .+|++||++.|+|||.++||..|.++.||++++++|+|+|+++....-. ...-....+.....             +  
T Consensus        95 ~~m~~Ge~~~~~i~~~~~yg~~g~~~~i~~~~~l~~~v~l~~~~~~~~~~dg~~~k~i~~~g~~~~~p~~g~~V~v~y~g  174 (457)
T 1kt0_A           95 ATMKRGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKGEDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEG  174 (457)
T ss_dssp             TTCCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEECEETTSSSSEEEEEEECCBCSCCCCTTCEEEEEEEE
T ss_pred             hhCCCCCEEEEEEChHHhccccCCCCCCCCCCcEEEEEeeceeecccccCCcceEEEEEecCCCCCCCCCCCEEEEEEEE
Confidence            9999999999999999999999998899999999999999987542100 00000000000000             0  


Q ss_pred             Hhhhc------ccccc---------ccHHHHHHHHHH----HHhhcc------------cCCCCCh--------------
Q 015006          190 RVTGN------RLFKE---------GKFELAKAKYEK----VLRDFN------------HVNPQDD--------------  224 (414)
Q Consensus       190 k~~Gn------~~fk~---------g~y~~A~~~Y~~----al~~~~------------~~~p~~~--------------  224 (414)
                      +..|.      .-|..         ..++.|+..+++    +|.+-+            .+.|...              
T Consensus       175 ~~~g~~f~~~~~~f~~g~g~~~~v~~~~e~al~~~~~ge~~~l~i~P~~ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A~  254 (457)
T 1kt0_A          175 RCGGRMFDCRDVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAK  254 (457)
T ss_dssp             EETTEEEEEEEEEEETTCGGGGTCCHHHHHHHTTCCBTCEEEEEECGGGTTCSSCBGGGTBCTTCCEEEEEEEEEEECCC
T ss_pred             EeCCeEEecCceEEEeCCCccccCChHHHHHHHhCCCCCEEEEEECcccccCCCCCcccCCCCCCEEEEEhhhhhcccCc
Confidence            00000      01111         134444444443    211000            0000000              


Q ss_pred             ---HHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHcCCHH
Q 015006          225 ---EEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH---------------VKGLYRRGMAYMALGEFE  286 (414)
Q Consensus       225 ---~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~---------------~ka~~r~g~a~~~l~~~~  286 (414)
                         ............++.++|.+++++++|.+|+..|.+||+++|.+               ..+|+++|.||..+|+|+
T Consensus       255 ~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~  334 (457)
T 1kt0_A          255 ESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYT  334 (457)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             chhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence               00011223346689999999999999999999999999999998               799999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 015006          287 EAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKK  335 (414)
Q Consensus       287 eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  335 (414)
                      +|+.+|++||+++|++ ..+...+..+...+.+..+ ....+.+.+...
T Consensus       335 ~A~~~~~~al~~~p~~-~~a~~~~g~a~~~~g~~~~-A~~~~~~al~l~  381 (457)
T 1kt0_A          335 KAVECCDKALGLDSAN-EKGLYRRGEAQLLMNEFES-AKGDFEKVLEVN  381 (457)
T ss_dssp             HHHHHHHHHHHHSTTC-HHHHHHHHHHHHHTTCHHH-HHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhcCCcc-HHHHHHHHHHHHHccCHHH-HHHHHHHHHHhC
Confidence            9999999999999998 5677777766655443333 233444444443

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A

Probab=99.97  E-value=8.8e-31  Score=255.87  Aligned_cols=159  Identities=26%  Similarity=0.472  Sum_probs=104.6

Q ss_pred             CccccCCcCcEEEEEEcCCCcCCCC-CCCCCCCCCeeeEEEEeeEEEeeeeecCCCceEEEEeecccCCCCCCCCCCCCe
Q 015006            1 MGIGTMTREEKAVIYVTSQYLTPSP-LMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSL   79 (414)
Q Consensus         1 ~~~~~m~~Ge~~~~~i~~~~~~g~~-~~~~ip~~~~l~~~vel~~~~~~~dv~~dg~~~k~i~~~G~g~~~~~~p~~~~~   79 (414)
                      .||.+|++||++.|+|||++|||.. .++.||||++|+|+|+|++|....|+..|++++|+++++|.|+   .+|..|+.
T Consensus        72 ~~l~gm~~Ge~~~~~ip~~~aYG~~g~~~~Ip~~~~l~f~vel~~~~~~~di~~D~~~~k~i~~~G~g~---~~p~~g~~  148 (356)
T 3jxv_A           72 QGIKTMKKGENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDKW---ENPKDPDE  148 (356)
T ss_dssp             ----------------------------------------------CCEEETTSSSSEEEEEEECCBSS---CCCCTTCE
T ss_pred             HHHhcCCCCCEEEEEEChHHhCCCCCCCCCcCCCCEEEEEeeEEeeecccccccCceeEEEEEecCccc---CCCCCCCE
Confidence            3789999999999999999999985 4579999999999999999999999999999999999999996   35789999


Q ss_pred             EEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCCeEEEEecCCCccccCCCCC-----CCC
Q 015006           80 LCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-----NVP  154 (414)
Q Consensus        80 v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~-----~ip  154 (414)
                      |+|||+|++.|  |++|+++      .++.|.+|++.+++||+.+|.+|++||++.|+|+|+|+||+.|.++     .||
T Consensus       149 V~v~y~g~l~d--gt~~~~~------~~~~f~~g~~~v~~gl~~~l~~m~~GE~~~~~v~p~~~yg~~G~~~~~~~~~ip  220 (356)
T 3jxv_A          149 VFVKYEARLED--GTVVSKS------EGVEFTVKDGHLCPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVP  220 (356)
T ss_dssp             EEEEEEEEETT--SCEEEEE------EEEEEEGGGCSSSHHHHHHHTTCCBTCEEEEEECGGGTTTTTCBCCCC--CCBC
T ss_pred             EEEEEEEEECC--CCEEecc------CCEEEEeCCCCcchHHHHHHhhCCCCCEEEEEEChHhhcCCCCCCcccccccCC
Confidence            99999999976  9998554      2799999999999999999999999999999999999999998764     599


Q ss_pred             CCcceEEEEEEcccCC
Q 015006          155 EGAHIQWEIELLGFEK  170 (414)
Q Consensus       155 ~~~~l~~eieL~~~~~  170 (414)
                      ++++|.|+|+|+++..
T Consensus       221 ~~~~l~~~vel~~~~~  236 (356)
T 3jxv_A          221 PNASLVIDLELVSWKT  236 (356)
T ss_dssp             TTCCEEEEEEEEEEEC
T ss_pred             CCcEEEEEEEEEEEec
Confidence            9999999999999865

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A

Probab=99.97  E-value=8.8e-30  Score=239.79  Aligned_cols=160  Identities=31%  Similarity=0.480  Sum_probs=143.1

Q ss_pred             ccccCCcCcEEEEEEcCCCcCCC-CCCCCCCCCCeeeEEEEeeEEEeeeeec--CCCceEEEEeecccCCCCCCCCCCCC
Q 015006            2 GIGTMTREEKAVIYVTSQYLTPS-PLMPVVEGCEEVHFEVELVHLIQVRDML--GDGRLIKRRIRDGKGEFPMDCPLHDS   78 (414)
Q Consensus         2 ~~~~m~~Ge~~~~~i~~~~~~g~-~~~~~ip~~~~l~~~vel~~~~~~~dv~--~dg~~~k~i~~~G~g~~~~~~p~~~~   78 (414)
                      ||.+|++||++.|+|||++|||. +.++.||+|++|+|+|+|+++.. .++.  +|++++++++++|.|..   .|..|+
T Consensus       113 aL~gm~~Ge~~~v~ipp~~aYG~~g~~~~Ip~~~~lvf~Vel~~i~~-~~~~~~~d~gl~~~il~~G~G~~---~~~~gd  188 (280)
T 1q1c_A          113 AIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKG-EDLTEEEDGGIIRRIQTRGEGYA---KPNEGA  188 (280)
T ss_dssp             HHTTCCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC-EECCTTCSSSEEEEEEECCSCSC---CCCTTC
T ss_pred             HHhcCCCCCEEEEEECcHHhCCCcCccCCCCCCCcEEEEEEeeeecc-cccccccccceeEEeeecccccc---cccCCc
Confidence            78999999999999999999998 44688999999999999999975 5888  89999999999999973   357899


Q ss_pred             eEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCC---chHHHHHHhhhcCCCCeEEEEecCCCccccCCCCC-CCC
Q 015006           79 LLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL---VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVP  154 (414)
Q Consensus        79 ~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~---v~~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~-~ip  154 (414)
                      .|+|||+|++ +  |++| ++      .|+.|.+|.|.   +++||+.+|.+|++||++.|+|||+++||..+.+. .||
T Consensus       189 ~V~i~y~g~~-d--G~~f-d~------~~~~f~lG~g~~~~~i~G~e~~l~gmk~Ge~~~v~ip~~~~yG~~~~~~~~IP  258 (280)
T 1q1c_A          189 IVEVALEGYY-K--DKLF-DQ------RELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIP  258 (280)
T ss_dssp             EEEEEEEEEE-T--TEEE-EE------EEEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCBGGGTBC
T ss_pred             eEEEEEEEEe-C--CEEE-ec------CCeEEEecCCcccccchhHHHHHhCCCCCcEEEEEEChhHcCCcCCCccCccC
Confidence            9999999997 4  8888 43      38999999998   59999999999999999999999999999988664 599


Q ss_pred             CCcceEEEEEEcccCCCCCCC
Q 015006          155 EGAHIQWEIELLGFEKPKDWT  175 (414)
Q Consensus       155 ~~~~l~~eieL~~~~~~~~~~  175 (414)
                      +|++++|+|+|+++...++.|
T Consensus       259 ~~~~l~f~V~L~~i~~~~~~W  279 (280)
T 1q1c_A          259 PNAELKYELHLKSFEKAKESW  279 (280)
T ss_dssp             TTCCEEEEEEEEEEECCCC--
T ss_pred             CCCeEEEEEEEEEEeCCCCCC
Confidence            999999999999999888766

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A

Probab=99.90  E-value=2.5e-23  Score=176.57  Aligned_cols=116  Identities=38%  Similarity=0.604  Sum_probs=105.0

Q ss_pred             eeeeec--CCCceEEEEeecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHH
Q 015006           47 QVRDML--GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMC  124 (414)
Q Consensus        47 ~~~dv~--~dg~~~k~i~~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~  124 (414)
                      +.+||+  .|++|+++++++|.|..   .|..|+.|+|||+|++.|  |++| +++++ ++.|+.|.+|.+.+++||+.+
T Consensus        25 ~~~di~~~~d~gv~~~i~~~G~G~~---~p~~gd~V~v~Y~g~~~d--G~~f-dss~~-~~~p~~f~lG~g~~i~G~e~~   97 (144)
T 3o5e_A           25 QGEDITSKKDRGVLKIVKRVGNGEE---TPMIGDKVYVHYKGKLSN--GKKF-DSSHD-RNEPFVFSLGKGQVIKAWDIG   97 (144)
T ss_dssp             HCEECCSSCSSSEEEEEEECCBSSC---CCCTTCEEEEEEEEECTT--SCEE-EESGG-GTSCEEEETTSSSSCHHHHHH
T ss_pred             ccccccccCCCeEEEEEEECCCCCc---cCCCCCEEEEEEEEEECC--CCEE-Eeecc-cCCCeEEEeCCCcccHHHHHH
Confidence            457888  89999999999999962   357999999999999865  8998 55544 478999999999999999999


Q ss_pred             hhhcCCCCeEEEEecCCCccccCCCCCCCCCCcceEEEEEEcccC
Q 015006          125 VRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE  169 (414)
Q Consensus       125 l~~M~~GE~~~v~i~~~~~yg~~~~~~~ip~~~~l~~eieL~~~~  169 (414)
                      |.+|++||++.|.|||+++||..+.++.||++++|+|+|+|+++.
T Consensus        98 l~gm~~Ge~~~v~ipp~~aYG~~g~~~~Ipp~~~L~f~VeL~~ik  142 (144)
T 3o5e_A           98 VATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFK  142 (144)
T ss_dssp             HTTCCBTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             HhCCCCCCEEEEEEChHHCcCCCCCCCCcCCCCeEEEEEEEEEec
Confidence            999999999999999999999999988999999999999999875

>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}

Probab=99.90  E-value=9.4e-24  Score=181.29  Aligned_cols=119  Identities=24%  Similarity=0.369  Sum_probs=98.2

Q ss_pred             CCCceEEEEeecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCC
Q 015006           53 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGE  132 (414)
Q Consensus        53 ~dg~~~k~i~~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE  132 (414)
                      .+.+|.|+|+++|+|..|.  +..|++|+|||+|++.|++|++| ||+++ +++|++|.||.++||+||+.+|.+|++||
T Consensus         8 ~~~Gv~~~vl~~G~G~~p~--~~~G~~V~vhY~g~l~d~~G~~F-DsS~~-rg~P~~f~lG~g~vI~Gwd~gl~~M~~Ge   83 (165)
T 2lkn_A            8 REDGIQKRVIQEGRGELPD--FQDGTKATFHYRTLHSDDEGTVL-DDSRA-RGKPMELIIGKKFKLPVWETIVCTMREGE   83 (165)
T ss_dssp             HTTSCCCCEEECCSSCCCC--CCTTCEEEEECEEECSSSSCCEE-EESTT-TTCCEEEESSSSCSCSHHHHHHTTCCTTC
T ss_pred             cCCCeEEEEEECCcCCCCC--CCCCCEEEEEEEEEEeCCCccEE-Eeccc-CCCCEEEEecCCCccHHHHHHHhcCccCc
Confidence            4567999999999997652  24799999999999987779998 66666 68999999999999999999999999999


Q ss_pred             eEEEEecCCCcccc--------CCCCCC-----------------------------CCCCcceEEEEEEcccCCCCCCC
Q 015006          133 IALVTCPPDYAYDK--------FLRPAN-----------------------------VPEGAHIQWEIELLGFEKPKDWT  175 (414)
Q Consensus       133 ~~~v~i~~~~~yg~--------~~~~~~-----------------------------ip~~~~l~~eieL~~~~~~~~~~  175 (414)
                      ++.|+|||++|||.        ......                             |++..+|+|+|||++|+.+.++.
T Consensus        84 ~~~~~ipp~laYG~p~v~~~~r~~~~~~~p~~~~~~~~g~~~~~~~~~~g~~d~~~li~~p~~L~FeIELl~Ve~P~eye  163 (165)
T 2lkn_A           84 IAQFLCDIKHVVLYPLVAKSLRNIAVGKDPLEGQRHCCGVAQMREHSSLGHADLDALQQNPQPLIFHMEMLKVESPGTYQ  163 (165)
T ss_dssp             EEEEECCHHHHSSHHHHHHHHTTGGGSSTTTTTCSCCSSCCSCCCCCCCCCSTTTHHHHSCCCCEEEEEEEEEECTTTCC
T ss_pred             eEEEEECHHHhcCCcchhhhhhhccccCCCccccccceeeeeccccccccccccccccCCCCCeEEEEEEEEEcCCcccc
Confidence            99999999999982        000111                             23346799999999999877653

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}

Probab=99.89  E-value=7.4e-23  Score=179.90  Aligned_cols=125  Identities=28%  Similarity=0.439  Sum_probs=100.3

Q ss_pred             CceEEEEeecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCC-CchHHHHHHhhhcCCCCe
Q 015006           55 GRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEG-LVPEGFEMCVRLMLPGEI  133 (414)
Q Consensus        55 g~~~k~i~~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~-~v~~gle~~l~~M~~GE~  133 (414)
                      ++|.++++++|.|..|    ..|+.|+|||+|++.+ +|++| ++++. ++.|+.|.+|.+ .+++||+.+|.+|++||+
T Consensus        49 ~gl~~~vl~~G~G~~~----~~Gd~V~v~Y~g~l~~-dG~~f-dss~~-~~~p~~f~lG~g~~vi~G~eeaL~gMk~Ge~  121 (180)
T 2f4e_A           49 EKVSKQIIKEGHGSKP----SKYSTCFLHYRAWTKN-SQHKF-EDTWH-EQQPIELVLGKEKKELAGLAIGVASMKSGER  121 (180)
T ss_dssp             TTEEEEEEECCBSCCB----CTTCEEEEEEEEEETT-TCCEE-EETTT-TTCCEEEETTSCCGGGHHHHHHHTTCCBTCE
T ss_pred             CceEEEEEeCCCCCCC----CCCCEEEEEEEEEECC-CCcEE-eccCc-cCCCEEEEeCCCCchhHHHHHHHhCCCCCCE
Confidence            4799999999999744    6899999999999874 48888 55554 478999999999 999999999999999999


Q ss_pred             EEEEecCCCccccCCC--CCCCCCCcceEEEEEEcccCCCCC---CCCCchhhhhHHH
Q 015006          134 ALVTCPPDYAYDKFLR--PANVPEGAHIQWEIELLGFEKPKD---WTGLSFDGIMDEA  186 (414)
Q Consensus       134 ~~v~i~~~~~yg~~~~--~~~ip~~~~l~~eieL~~~~~~~~---~~~~~~~e~~~~a  186 (414)
                      +.|.|||+++||..+.  ++.||+|++|+|+|+|+++....+   .|.|+.+|++..|
T Consensus       122 ~~v~iPp~~aYG~~g~~~~~~Ip~~s~l~F~VeL~~v~~~~e~~~~~~mt~eErl~~A  179 (180)
T 2f4e_A          122 ALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAA  179 (180)
T ss_dssp             EEEEECGGGTTTTTCBSSSSCBCTTCCEEEEEEEEEESCBCCC---------------
T ss_pred             EEEEECchHhCCcCCcccCCCcCCCCeEEEEEEEEEEecCccccccccCCHHHHHhhc
Confidence            9999999999999886  467999999999999999988777   8999999998876

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A

Probab=99.88  E-value=1.6e-22  Score=168.25  Aligned_cols=115  Identities=37%  Similarity=0.602  Sum_probs=103.2

Q ss_pred             eeeec--CCCceEEEEeecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHh
Q 015006           48 VRDML--GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCV  125 (414)
Q Consensus        48 ~~dv~--~dg~~~k~i~~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l  125 (414)
                      .+||+  .|++++++++++|+|..   .|..|+.|+|||++++.|  |++| +++++ ++.|+.|.+|.+.+++||+.+|
T Consensus        10 ~~di~~~~d~gv~~~i~~~G~G~~---~p~~gd~V~v~Y~g~~~d--G~~f-dss~~-~~~p~~f~lG~g~~i~G~e~~l   82 (128)
T 3o5q_A           10 GEDITSKKDRGVLKIVKRVGNGEE---TPMIGDKVYVHYKGKLSN--GKKF-DSSHD-RNEPFVFSLGKGQVIKAWDIGV   82 (128)
T ss_dssp             CEECCSSCSSSEEEEEEECCSSSC---CCCTTCEEEEEEEEEETT--SCEE-EEHHH-HTSCEEEETTSSSSCHHHHHHH
T ss_pred             cceecccCCCCEEEEEEECCCCCc---cCCCCCEEEEEEEEEECC--CCEE-EecCC-CCCCEEEEECCCCccHHHHHHH
Confidence            46777  88999999999999962   357999999999999865  8998 55543 4679999999999999999999


Q ss_pred             hhcCCCCeEEEEecCCCccccCCCCCCCCCCcceEEEEEEcccC
Q 015006          126 RLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE  169 (414)
Q Consensus       126 ~~M~~GE~~~v~i~~~~~yg~~~~~~~ip~~~~l~~eieL~~~~  169 (414)
                      .+|++||++.|.|||+++||..+.++.||++++|+|+|+|+++.
T Consensus        83 ~gm~~Ge~~~v~ip~~~aYG~~g~~~~Ip~~~~l~f~vel~~i~  126 (128)
T 3o5q_A           83 ATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFK  126 (128)
T ss_dssp             TTCCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             hcCCCCCEEEEEEChHHcCCCCCCCCCcCCCCEEEEEEEEEEec
Confidence            99999999999999999999999888999999999999999875

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens}

Probab=99.88  E-value=7.3e-23  Score=171.65  Aligned_cols=116  Identities=31%  Similarity=0.503  Sum_probs=98.5

Q ss_pred             eeeeecCCCceEEEEeecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhh
Q 015006           47 QVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVR  126 (414)
Q Consensus        47 ~~~dv~~dg~~~k~i~~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~  126 (414)
                      ++.||+.+++|.++++++|.|..+    ..|+.|+|||+|++.+ +|++| +++.. +++|++|.+|.+.+++||+.+|.
T Consensus        18 ~~~~v~~~~gl~~~vl~~G~g~~~----~~gd~V~v~Y~g~l~~-~G~~f-dss~~-~~~p~~f~lG~g~~i~G~e~aL~   90 (134)
T 3b7x_A           18 RMLDISGDRGVLKDVIREGAGDLV----APDASVLVKYSGYLEH-MDRPF-DSNYF-RKTPRLMKLGEDITLWGMELGLL   90 (134)
T ss_dssp             TCEESSSSSSEEEEEEECCEEEEC----CTTCEEEEEEEEECTT-CSSCS-EEC--------CEEC-CCCCCHHHHHHHH
T ss_pred             ccceeeCCCCEEEEEEEcCCCCCC----CCCCEEEEEEEEEECC-CCeEE-EecCC-CCCCEEEEcCCcchhHHHHHHHh
Confidence            467999999999999999999754    4799999999999864 48888 55543 46799999999999999999999


Q ss_pred             hcCCCCeEEEEecCCCccccCCCCCCCCCCcceEEEEEEcccC
Q 015006          127 LMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE  169 (414)
Q Consensus       127 ~M~~GE~~~v~i~~~~~yg~~~~~~~ip~~~~l~~eieL~~~~  169 (414)
                      +|++||++.|+|||++|||..+.++.||+|++|+|+|+|+++.
T Consensus        91 gm~~Ge~~~v~ip~~~aYG~~~~~~~Ip~~~~l~f~VeL~~i~  133 (134)
T 3b7x_A           91 SMRRGELARFLFKPNYAYGTLGCPPLIPPNTTVLFEIELLDFL  133 (134)
T ss_dssp             TCEETCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEC
T ss_pred             CCCCCCEEEEEECHHHCcCCCCCCCCcCcCCeEEEEEEEEEEe
Confidence            9999999999999999999999888899999999999999874

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.88  E-value=2.5e-22  Score=173.12  Aligned_cols=154  Identities=22%  Similarity=0.412  Sum_probs=129.4

Q ss_pred             hhhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccC----CCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHH
Q 015006          179 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV----NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKS  254 (414)
Q Consensus       179 ~~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~----~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A  254 (414)
                      .+++++.+..+++.|+.+|+.|+|..|+..|.+|+..+...    .|.+ ++...+......+|+|+|.||+++|+|.+|
T Consensus         4 ~~e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~nla~~~~~~~~~~~A   82 (162)
T 3rkv_A            4 EDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGE-PEWVELDRKNIPLYANMSQCYLNIGDLHEA   82 (162)
T ss_dssp             ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTS-HHHHHHHHTHHHHHHHHHHHHHHHTCHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCH-HHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            46788899999999999999999999999999999965432    2333 334455677788999999999999999999


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015006          255 IEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFD  333 (414)
Q Consensus       255 ~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  333 (414)
                      +.+|.+||.++|.++++|+++|.+|..+|+|++|+.+|++|++++|++...+...+..+..++++..+++++.|++||+
T Consensus        83 ~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~  161 (162)
T 3rkv_A           83 EETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADSRVTYSKMFQ  161 (162)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSSCC-------
T ss_pred             HHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999985478999999999999999999999999985

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A

Probab=99.88  E-value=9.4e-22  Score=163.97  Aligned_cols=116  Identities=33%  Similarity=0.564  Sum_probs=100.6

Q ss_pred             eeecCCCceEEEEeecc-cCCCCCCCCCCCCeEEEEEEEEe-ecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhh
Q 015006           49 RDMLGDGRLIKRRIRDG-KGEFPMDCPLHDSLLCVHYKGML-LNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVR  126 (414)
Q Consensus        49 ~dv~~dg~~~k~i~~~G-~g~~~~~~p~~~~~v~v~y~g~~-~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~  126 (414)
                      .+++.||.++++++++| .|.-  ..|..|+.|+|||+|++ .+  |++| +++.. ++.|++|.+|.+.+++||+.+|.
T Consensus        10 ~~~~~~g~~~~~il~~G~~g~g--~~~~~gd~V~v~Y~g~~~~d--G~~f-d~s~~-~~~p~~f~lG~g~~i~g~e~~l~   83 (129)
T 2vn1_A           10 VELTADGGVIKTILKKGDEGEE--NIPKKGNEVTVHYVGKLEST--GKVF-DSSFD-RNVPFKFHLEQGEVIKGWDICVS   83 (129)
T ss_dssp             EECSTTSSEEEEEEECCCCSGG--GSCCTTCEEEEEEEEEETTT--CCEE-EEGGG-TTCCEEEETTSSSSCHHHHHHHT
T ss_pred             cEECCCCCEEEEEEeCCCCCCC--CcCCCCCEEEEEEEEEECCC--CeEE-EecCC-CCccEEEEeCCCCcCHHHHHHHh
Confidence            46779999999999977 4421  12468999999999998 44  8998 55543 46899999999999999999999


Q ss_pred             hcCCCCeEEEEecCCCccccCCCCCCCCCCcceEEEEEEcccCC
Q 015006          127 LMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEK  170 (414)
Q Consensus       127 ~M~~GE~~~v~i~~~~~yg~~~~~~~ip~~~~l~~eieL~~~~~  170 (414)
                      +|++||++.|.|||+++||..+.++.||+|++++|+|+|+++..
T Consensus        84 gm~~Ge~~~v~ip~~~aYG~~~~~~~Ip~~~~l~f~vel~~v~~  127 (129)
T 2vn1_A           84 SMRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSFRE  127 (129)
T ss_dssp             TCCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC
T ss_pred             CCCCCCEEEEEEChHHcCCCCCCCCCcCCCCeEEEEEEEEEEec
Confidence            99999999999999999999998888999999999999998865

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1

Probab=99.87  E-value=5.7e-22  Score=166.41  Aligned_cols=117  Identities=32%  Similarity=0.560  Sum_probs=104.0

Q ss_pred             eeeec--CCCceEEEEeecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHh
Q 015006           48 VRDML--GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCV  125 (414)
Q Consensus        48 ~~dv~--~dg~~~k~i~~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l  125 (414)
                      +.||+  .+++|.++++++|.|..   .|..|+.|+|||+|++.+  |++| +++.. +++|++|.+|.+.+++||+.+|
T Consensus         5 ~~dv~~~~~~gl~~~~l~~G~g~~---~~~~gd~V~v~Y~g~~~d--G~~f-dss~~-~~~p~~f~lG~~~vi~G~e~~l   77 (135)
T 1r9h_A            5 KIDITPKKDGGVLKLIKKEGQGVV---KPTTGTTVKVHYVGTLEN--GTKF-DSSRD-RGDQFSFNLGRGNVIKGWDLGV   77 (135)
T ss_dssp             CEECSTTCCSSEEEEEEECCBSSC---CCCTTCEEEEEEEEEETT--SCEE-EEHHH-HTSCEEEETTTTSSCHHHHHHH
T ss_pred             ceecccCCCCcEEEEEEEccCCCc---CCCCCCEEEEEEEEEECC--CCEE-EecCc-CCCCEEEEeCCCCccHHHHHHH
Confidence            56888  88999999999999962   357899999999999855  9998 55432 3579999999999999999999


Q ss_pred             hhcCCCCeEEEEecCCCccccCCCCCCCCCCcceEEEEEEcccCCC
Q 015006          126 RLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKP  171 (414)
Q Consensus       126 ~~M~~GE~~~v~i~~~~~yg~~~~~~~ip~~~~l~~eieL~~~~~~  171 (414)
                      .+|++||++.|.|||+++||..+.++.||++++++|+|+|+++...
T Consensus        78 ~gm~~Ge~~~v~ip~~~aYG~~g~~~~Ip~~~~l~f~v~l~~i~~~  123 (135)
T 1r9h_A           78 ATMTKGEVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEWSAE  123 (135)
T ss_dssp             TTCCBTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC-
T ss_pred             hcCCCCCEEEEEEChHHcCCCCCCCCCcCcCCcEEEEEEEEEeecC
Confidence            9999999999999999999999988899999999999999998653

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A

Probab=99.87  E-value=1.8e-21  Score=159.58  Aligned_cols=113  Identities=27%  Similarity=0.368  Sum_probs=100.9

Q ss_pred             eeeeecCCCceEEEEeecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhh
Q 015006           47 QVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVR  126 (414)
Q Consensus        47 ~~~dv~~dg~~~k~i~~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~  126 (414)
                      .|.++++||++.++++++|.|..  ..|..|+.|+|||++++.+  |++|+ ++     +|+.|.+|.+.+++||+.+|.
T Consensus         5 ~~~~~~~~g~~~~~vl~~G~G~~--~~~~~gd~V~v~y~g~~~d--G~~~d-s~-----~p~~f~lG~~~~i~g~e~~l~   74 (118)
T 2awg_A            5 EWLDILGNGLLRKKTLVPGPPGS--SRPVKGQVVTVHLQTSLEN--GTRVQ-EE-----PELVFTLGDCDVIQALDLSVP   74 (118)
T ss_dssp             CEEESSSSSSEEEEEEECCCTTC--CCCCTTSEEEEEEEEECTT--SCEEE-EE-----EEEEEETTSSCSCHHHHHHGG
T ss_pred             cceEECCCCCEEEEEEEcCCCCC--ccCCCCCEEEEEEEEEECC--CCEEE-CC-----CCEEEEECCCChhHHHHHHHh
Confidence            35789999999999999999962  1357899999999999854  89884 32     589999999999999999999


Q ss_pred             hcCCCCeEEEEecCCCccccCCCCCCCCCCcceEEEEEEcccC
Q 015006          127 LMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE  169 (414)
Q Consensus       127 ~M~~GE~~~v~i~~~~~yg~~~~~~~ip~~~~l~~eieL~~~~  169 (414)
                      +|++||++.|.|||+++||..+.++.||++++++|+|+|+++.
T Consensus        75 gm~~Ge~~~~~ip~~~ayG~~~~~~~Ip~~~~l~f~v~l~~v~  117 (118)
T 2awg_A           75 LMDVGETAMVTADSKYCYGPQGRSPYIPPHAALCLEVTLKTAV  117 (118)
T ss_dssp             GSCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             CCCCCCEEEEEEChHHccCCCCCCCccCCCCeEEEEEEEEEec
Confidence            9999999999999999999999888899999999999999864

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A*

Probab=99.86  E-value=2.3e-21  Score=159.31  Aligned_cols=109  Identities=28%  Similarity=0.535  Sum_probs=95.6

Q ss_pred             CceEEEEeecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccCC------CCCceEEEcCCCCchHHHHHHhhhc
Q 015006           55 GRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDN------DGQPLEFSSGEGLVPEGFEMCVRLM  128 (414)
Q Consensus        55 g~~~k~i~~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~------~~~p~~f~lG~~~v~~gle~~l~~M  128 (414)
                      .++.|+|+++|+|..   .|..|+.|+|||+|++.|  |++| ++++..      .++|+.|.+|.+.+++||+.+|.+|
T Consensus         4 ~g~~~~il~~G~g~~---~p~~gd~V~v~Y~g~~~d--G~~f-dss~~~~~~~~~~~~p~~f~lG~~~~i~G~e~~l~gm   77 (119)
T 3kz7_A            4 PKYTKSILKKGDKTN---FPKKGDVVHCWYTGTLPD--GTVF-DTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTM   77 (119)
T ss_dssp             CSEEEEEEECCCSSC---CCCTTCEEEEEEEEECTT--SCEE-EECCCCSSSTTTTCCCEEEETTSSSSCHHHHHHHTTC
T ss_pred             CccEEEEEEcCCCCC---cCCCCCEEEEEEEEEECC--CCEE-EeccccccccccCCCCEEEEECCCChhHHHHHHHhCC
Confidence            478999999999952   357999999999999865  9998 454421      1479999999999999999999999


Q ss_pred             CCCCeEEEEecCCCccccCCCCC-CCCCCcceEEEEEEcccC
Q 015006          129 LPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFE  169 (414)
Q Consensus       129 ~~GE~~~v~i~~~~~yg~~~~~~-~ip~~~~l~~eieL~~~~  169 (414)
                      ++||++.|.|||++|||..+.++ .||++++|+|+|+|++++
T Consensus        78 ~~Ge~~~v~ip~~~aYG~~g~~~~~Ip~~~~l~f~veL~~i~  119 (119)
T 3kz7_A           78 SKGEKARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELVDID  119 (119)
T ss_dssp             CTTCEEEEEECGGGTTCTTCBGGGTBCTTCCEEEEEEEEEEC
T ss_pred             CCCCEEEEEECcHHhcCCCCCCCCccCcCCeEEEEEEEEEeC
Confidence            99999999999999999999865 799999999999999863

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens}

Probab=99.86  E-value=2.6e-21  Score=165.66  Aligned_cols=115  Identities=27%  Similarity=0.352  Sum_probs=101.7

Q ss_pred             eeeecCCCceEEEEeecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhh
Q 015006           48 VRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRL  127 (414)
Q Consensus        48 ~~dv~~dg~~~k~i~~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~  127 (414)
                      +.|++.+|.+.++++++|+|..  ..|..||.|+|||+|++.|  |++|+ +     ++|++|.+|.+.+++||+.+|.+
T Consensus        36 ~~~~~~sG~v~~~vl~~G~G~~--~~p~~gd~V~v~Y~g~l~d--G~~fd-s-----~~p~~f~lG~g~vi~G~eeaL~g  105 (157)
T 2jwx_A           36 WLDILGNGLLRKKTLVPGPPGS--SRPVKGQVVTVHLQTSLEN--GTRVQ-E-----EPELVFTLGDCDVIQALDLSVPL  105 (157)
T ss_dssp             CEESSSSSSEEEEEEECCSTTS--CCCCTTEEEEEEEEEECTT--SCEEE-E-----EEEEEEETTTTSSCHHHHHHTTT
T ss_pred             cceECCCCCEEEEEEEccCCCc--cCCCCCCEEEEEEEEEECC--CCEee-c-----CCCEEEEeCCCChhHHHHHHHcC
Confidence            4578899999999999999961  1357899999999999865  99984 3     25899999999999999999999


Q ss_pred             cCCCCeEEEEecCCCccccCC-CCCCCCCCcceEEEEEEcccCCCC
Q 015006          128 MLPGEIALVTCPPDYAYDKFL-RPANVPEGAHIQWEIELLGFEKPK  172 (414)
Q Consensus       128 M~~GE~~~v~i~~~~~yg~~~-~~~~ip~~~~l~~eieL~~~~~~~  172 (414)
                      |++||++.|.|||+++||..+ .++.||+|++|+|+|+|+++....
T Consensus       106 Mk~Ge~~~v~IP~~~aYG~~g~~~~~IPp~stLiF~VeL~~i~~~~  151 (157)
T 2jwx_A          106 MDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDLE  151 (157)
T ss_dssp             SCTTCEEEEEECGGGTTTTTCCSSSCCCTTCCEEEEEEEEEEEECS
T ss_pred             CCCCCEEEEEECchhcCCcccccCCCcCCCCeEEEEEEEEEEEccc
Confidence            999999999999999999999 667899999999999999987654

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.86  E-value=1.2e-21  Score=164.51  Aligned_cols=123  Identities=26%  Similarity=0.319  Sum_probs=107.9

Q ss_pred             eeeeecCCCceEEEEeecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhh
Q 015006           47 QVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVR  126 (414)
Q Consensus        47 ~~~dv~~dg~~~k~i~~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~  126 (414)
                      .+.++++||.+.++++++|.|..  ..|..|+.|+|||++++.+  |++|+ +     +.|+.|.+|.+.+++||+.+|.
T Consensus         9 ~~~~~~~~g~l~~~vl~~G~G~~--~~~~~gd~V~v~Y~g~~~d--G~~fd-s-----~~p~~f~lG~g~~i~G~e~~L~   78 (135)
T 2d9f_A            9 EWLDILGNGLLRKKTLVPGPPGS--SRPVKGQVVTVHLQTSLEN--GTRVQ-E-----EPELVFTLGDCDVIQALDLSVP   78 (135)
T ss_dssp             SCEESSSSSSSEEEEEECCCSSC--CCCCTTSEEEEEEEEEESS--SCEEE-E-----EEEEEEETTSCCSCTTTTTTGG
T ss_pred             cCcEECCCCCEEEEEEEcCCCCC--ccCCCCCEEEEEEEEEECC--CCEEe-c-----CCCEEEEeCCCChhHHHHHHHh
Confidence            35688999999999999999961  1357899999999999865  89884 3     2589999999999999999999


Q ss_pred             hcCCCCeEEEEecCCCccccCC-CCCCCCCCcceEEEEEEcccCCCCCCCCCch
Q 015006          127 LMLPGEIALVTCPPDYAYDKFL-RPANVPEGAHIQWEIELLGFEKPKDWTGLSF  179 (414)
Q Consensus       127 ~M~~GE~~~v~i~~~~~yg~~~-~~~~ip~~~~l~~eieL~~~~~~~~~~~~~~  179 (414)
                      +|++||++.|.|||+++||..+ .++.||+|++|+|+|+|+++....+...++.
T Consensus        79 gm~~Ge~~~v~ip~~~aYG~~~~~~~~Ip~~~~l~f~vel~~v~~~~~~e~~s~  132 (135)
T 2d9f_A           79 LMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDRPDLEMSGP  132 (135)
T ss_dssp             GSCTTCEEEEEECHHHHTCTTCCSSSCCCTTCCEEEEEEEEEEESSCSSSSCCC
T ss_pred             CCCCCCEEEEEEChhHccCcCCcCCCccCCCCeEEEEEEEEEeecCCchhhcCc
Confidence            9999999999999999999998 6678999999999999999988777666654

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1

Probab=99.85  E-value=7.1e-21  Score=154.89  Aligned_cols=107  Identities=33%  Similarity=0.568  Sum_probs=95.5

Q ss_pred             CceEEEEeecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCCeE
Q 015006           55 GRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIA  134 (414)
Q Consensus        55 g~~~k~i~~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~  134 (414)
                      .++.++++++|.|..   +|..|+.|+|||++++.|  |++| +++.+ +++|+.|.+|.+.+++||+.+|.+|++||++
T Consensus         6 ~g~~~~~~~~G~g~~---~~~~gd~V~v~y~~~~~d--G~~~-d~s~~-~~~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~   78 (113)
T 1yat_A            6 GNVKIDRISPGDGAT---FPKTGDLVTIHYTGTLEN--GQKF-DSSVD-RGSPFQCNIGVGQVIKGWDVGIPKLSVGEKA   78 (113)
T ss_dssp             GGCEEEEEECCCSSC---CCCTTCEEEEEEEEEETT--SCEE-EESTT-TTCCEEEETTSSSSCHHHHHHGGGCCTTCEE
T ss_pred             CCeEEEEEECCCCcc---cCCCCCEEEEEEEEEECC--CCEE-EecCC-CCCcEEEEeCCCCccHHHHHHHhCCCCCCEE
Confidence            368999999999974   246899999999999854  8998 55543 4689999999999999999999999999999


Q ss_pred             EEEecCCCccccCCCCCCCCCCcceEEEEEEccc
Q 015006          135 LVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF  168 (414)
Q Consensus       135 ~v~i~~~~~yg~~~~~~~ip~~~~l~~eieL~~~  168 (414)
                      .|.|||.++||..+.++.||+|++++|+|+|+++
T Consensus        79 ~v~ip~~~ayG~~~~~~~Ip~~~~l~f~vel~~i  112 (113)
T 1yat_A           79 RLTIPGPYAYGPRGFPGLIPPNSTLVFDVELLKV  112 (113)
T ss_dssp             EEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEE
T ss_pred             EEEECHHHCcCCCCCCCCcCCCCeEEEEEEEEEe
Confidence            9999999999999988789999999999999876

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...

Probab=99.85  E-value=5e-21  Score=154.29  Aligned_cols=107  Identities=35%  Similarity=0.537  Sum_probs=94.9

Q ss_pred             ceEEEEeecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCCeEE
Q 015006           56 RLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIAL  135 (414)
Q Consensus        56 ~~~k~i~~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~~  135 (414)
                      +|.++++++|+|..   +|..||.|+|||++++.|  |++| +++.. +++|++|.+|.+.+++||+.+|.+|++||++.
T Consensus         1 Gl~~~~~~~G~g~~---~~~~gd~V~v~y~~~~~d--G~~~-d~s~~-~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~   73 (107)
T 2ppn_A            1 GVQVETISPGDGRT---FPKRGQTCVVHYTGMLED--GKKF-DSSRD-RNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAK   73 (107)
T ss_dssp             CEEEEEEECCCSSC---CCCTTCEEEEEEEEEETT--SCEE-EEHHH-HTSCEEEETTSCCSCHHHHHHHTTCCTTCEEE
T ss_pred             CcEEEEEECcCCCc---CCCCCCEEEEEEEEEECC--CCEE-EecCC-CCCCEEEEeCCCChHHHHHHHHhCCCCCCEEE
Confidence            57899999999964   246899999999999865  8998 44443 35799999999999999999999999999999


Q ss_pred             EEecCCCccccCCCCCCCCCCcceEEEEEEcccC
Q 015006          136 VTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE  169 (414)
Q Consensus       136 v~i~~~~~yg~~~~~~~ip~~~~l~~eieL~~~~  169 (414)
                      |.|||+++||..+.++.||+|++++|+|+|++++
T Consensus        74 ~~ip~~~ayG~~~~~~~Ip~~~~l~f~v~l~~v~  107 (107)
T 2ppn_A           74 LTISPDYAYGATGHPGIIPPHATLVFDVELLKLE  107 (107)
T ss_dssp             EEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEC
T ss_pred             EEECHHHccCCCCCCCCcCCCCeEEEEEEEEEeC
Confidence            9999999999998888899999999999998763

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*

Probab=99.84  E-value=1.5e-20  Score=157.04  Aligned_cols=108  Identities=28%  Similarity=0.482  Sum_probs=96.4

Q ss_pred             CCCceEEEEeecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCC
Q 015006           53 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGE  132 (414)
Q Consensus        53 ~dg~~~k~i~~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE  132 (414)
                      .+.++.++++++|.|..    |..|+.|+|+|++++.+  |++| +++++ +++|++|.+|.+.+++||+.+|.+|++||
T Consensus        26 ~~~gl~~~~l~~G~G~~----~~~gd~V~v~Y~g~~~d--G~~f-dss~~-~~~p~~f~lG~g~vi~G~eeaL~gmk~Ge   97 (133)
T 2y78_A           26 TESGLKYEDLTEGSGAE----ARAGQTVSVHYTGWLTD--GQKF-DSSKD-RNDPFAFVLGGGMVIKGWDEGVQGMKVGG   97 (133)
T ss_dssp             CTTSCEEEEEECCSSCB----CCTTSEEEEEEEEEETT--SCEE-EETTT-TTCCEEEETTSSSSCHHHHHHSTTCBTTC
T ss_pred             CCCCEEEEEEEcCCCCC----CCCCCEEEEEEEEEECC--CCEE-eccCc-CCCCEEEEeCCCChhHHHHHHHcCCCCCC
Confidence            45678999999999964    46899999999999854  8988 55543 46899999999999999999999999999


Q ss_pred             eEEEEecCCCccccCCCCCCCCCCcceEEEEEEccc
Q 015006          133 IALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF  168 (414)
Q Consensus       133 ~~~v~i~~~~~yg~~~~~~~ip~~~~l~~eieL~~~  168 (414)
                      ++.|.|||.++||..+.++.|||+++++|+|+|+++
T Consensus        98 ~~~v~ip~~~aYG~~~~~~~Ipp~~~l~f~VeL~~I  133 (133)
T 2y78_A           98 VRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLDV  133 (133)
T ss_dssp             EEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEC
T ss_pred             EEEEEECcHHhCCCCCCCCCCCCCCeEEEEEEEEEC
Confidence            999999999999999988789999999999999864

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens}

Probab=99.84  E-value=1.4e-20  Score=156.02  Aligned_cols=117  Identities=21%  Similarity=0.336  Sum_probs=99.2

Q ss_pred             eeecCCCceEEEEeecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccC-CCCCceEEEcCCCCchHHHHHHhhh
Q 015006           49 RDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVD-NDGQPLEFSSGEGLVPEGFEMCVRL  127 (414)
Q Consensus        49 ~dv~~dg~~~k~i~~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~-~~~~p~~f~lG~~~v~~gle~~l~~  127 (414)
                      ..+..+.++.++++++|.+.  ...|..|+.|+|||+|++.+ +|++|+ ++.. ..++|++|.+|.+.+++||+.+|.+
T Consensus         6 ~~~~~~~gl~~~~l~~g~~~--g~~~~~gd~V~v~Y~g~~~~-dG~~fd-ss~~~~~~~p~~f~lG~~~~i~G~e~~l~g   81 (125)
T 4dip_A            6 GALIPEPEVKIEVLQKPFIC--HRKTKGGDLMLVHYEGYLEK-DGSLFH-STHKHNNGQPIWFTLGILEALKGWDQGLKG   81 (125)
T ss_dssp             GGGCCCCCCEEEEEECCSCC--SCCCCTTCEEEEEEEEEETT-TCCEEE-EHHHHTTTCCEEEETTSCSSCHHHHHHSTT
T ss_pred             ceEECCCCeEEEEEEcCCCC--CCcCCCCCEEEEEEEEEECC-CCcEEE-EcccCCCCcCEEEEeCCCChhHHHHHHHhC
Confidence            34556778999999999832  12357999999999999973 399984 4432 1368999999999999999999999


Q ss_pred             cCCCCeEEEEecCCCccccCCCCCCCCCCcceEEEEEEcccCC
Q 015006          128 MLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEK  170 (414)
Q Consensus       128 M~~GE~~~v~i~~~~~yg~~~~~~~ip~~~~l~~eieL~~~~~  170 (414)
                      |++||++.|.|||++|||..+.+ .||++++|+|+|+|+++..
T Consensus        82 m~~Ge~~~~~ip~~~aYG~~g~~-~Ip~~~~l~f~vel~~i~~  123 (125)
T 4dip_A           82 MCVGEKRKLIIPPALGYGKEGKG-KIPPESTLIFNIDLLEIRN  123 (125)
T ss_dssp             CCTTCEEEEEECGGGTTTTTCBT-TBCTTCCEEEEEEEEEEEC
T ss_pred             CCCCCEEEEEEChHHhcCCCCCC-CCCCCCeEEEEEEEEEEEc
Confidence            99999999999999999999865 8999999999999999865

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1

Probab=99.84  E-value=1.5e-20  Score=162.66  Aligned_cols=121  Identities=26%  Similarity=0.410  Sum_probs=102.2

Q ss_pred             CCCceEEEEeecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCC
Q 015006           53 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGE  132 (414)
Q Consensus        53 ~dg~~~k~i~~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE  132 (414)
                      .+.+|.++++++|+|..   +|..|+.|+|||+|++.|  |++| +++.. ++.|++|.+  +.+++||+.+|.+|++||
T Consensus        35 ~~sGl~~~vl~~G~G~~---~~~~gd~V~v~Y~g~l~d--G~~f-dss~~-~g~p~~f~l--g~vI~G~eeaL~gMk~Ge  105 (167)
T 1jvw_A           35 LPSGLVFQRIARGSGKR---APAIDDKCEVHYTGRLRD--GTVF-DSSRE-RGKPTTFRP--NEVIKGWTEALQLMREGD  105 (167)
T ss_dssp             CTTSCEEEEEECCCCSB---CCCTTCCEEEEEEEECTT--SCEE-EEHHH-HTSCEEECG--GGSCHHHHHHHTTCCTTC
T ss_pred             CCCCEEEEEEEcCCCCc---CCCCCCEEEEEEEEEECC--CCEE-eeccc-cCCCEEEEe--CchhHHHHHHHcCCCCCC
Confidence            35578999999999974   257899999999999865  9998 55543 468999999  479999999999999999


Q ss_pred             eEEEEecCCCccccCCCCCCCCCCcceEEEEEEcccCCCCCCCCCchhhhhH
Q 015006          133 IALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMD  184 (414)
Q Consensus       133 ~~~v~i~~~~~yg~~~~~~~ip~~~~l~~eieL~~~~~~~~~~~~~~~e~~~  184 (414)
                      ++.|.|||.++||..+.++.||||++|+|+|+|+++....  +.++.+++-+
T Consensus       106 ~~~~~Ip~~laYG~~g~~~~Ipp~s~LiF~VeL~~i~~~~--~~~~~~e~~~  155 (167)
T 1jvw_A          106 RWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELISIKDGG--KGRTAEEVDE  155 (167)
T ss_dssp             EEEEEECGGGTTTTTCSSSSSCTTCCEEEEEEEEEEGGGC--CSCBHHHHHH
T ss_pred             EEEEEECchhhCCCCCCCCCcCCCCeEEEEEEEEEEEcCC--CCCCHHHHHH
Confidence            9999999999999999888899999999999999998543  3456665444

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=99.83  E-value=5.3e-20  Score=165.45  Aligned_cols=112  Identities=27%  Similarity=0.462  Sum_probs=99.9

Q ss_pred             eeecCCCceEEEEeecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhc
Q 015006           49 RDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLM  128 (414)
Q Consensus        49 ~dv~~dg~~~k~i~~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M  128 (414)
                      ..++.+.++.++++++|+|..    |..|+.|+|||+|++.|  |++| +++++ .+.|++|.+|.+.+++||+.+|.+|
T Consensus        98 t~~~~~sGl~~~vl~~G~G~~----~~~gd~V~v~Y~g~l~d--G~~f-dss~~-~~~P~~f~lG~g~vi~G~eeaL~gM  169 (209)
T 3uf8_A           98 TVVTTESGLKYEDLTEGSGAE----ARAGQTVSVHYTGWLTD--GQKF-DSSKD-RNDPFAFVLGGGMVIKGWDEGVQGM  169 (209)
T ss_dssp             CCEECTTSCEEEEEECCCSCB----CCTTCEEEEEEEEEETT--SCEE-EESGG-GTCCEEEETTSSSSCHHHHHHHTTC
T ss_pred             cccCCCCceEEEEEEcCCCCc----CCCCCEEEEEEEEEECC--CCEE-EEccc-cCCCEEEEeCCCccchhHHHHHhCC
Confidence            345567789999999999975    46899999999999865  9998 55544 4789999999999999999999999


Q ss_pred             CCCCeEEEEecCCCccccCCCCCCCCCCcceEEEEEEccc
Q 015006          129 LPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF  168 (414)
Q Consensus       129 ~~GE~~~v~i~~~~~yg~~~~~~~ip~~~~l~~eieL~~~  168 (414)
                      ++||++.|.|||++|||..+.++.||++++|+|+|+|+++
T Consensus       170 ~~Ge~~~v~Ipp~~aYG~~g~~~~IP~~s~LvF~VeL~~I  209 (209)
T 3uf8_A          170 KVGGVRRLTIPPQLGYGARGAAGVIPPNATLVFEVELLDV  209 (209)
T ss_dssp             BTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEC
T ss_pred             CCCCEEEEEECcHHhCCCCCCCCCcCCCCeEEEEEEEEEC
Confidence            9999999999999999999988889999999999999864

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia}

Probab=99.83  E-value=4e-20  Score=153.98  Aligned_cols=103  Identities=34%  Similarity=0.544  Sum_probs=91.8

Q ss_pred             EEEeecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCCeEEEEe
Q 015006           59 KRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTC  138 (414)
Q Consensus        59 k~i~~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~~v~i  138 (414)
                      |+++++|+|..   +|..||.|+|+|+|++.|  |++| +++++ +++|+.|.+|.+.+++||+.+|.+|++||++.|.|
T Consensus        28 K~~l~~G~G~~---~~~~gd~V~v~Y~g~~~d--G~~f-dss~~-~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~~~v~i  100 (130)
T 2lgo_A           28 KKVLTPGDGVT---KPQAGKKVTVHYDGRFPD--GKQF-DSSRS-RGKPFQFTLGAGEVIKGWDQGVATMTLGEKALFTI  100 (130)
T ss_dssp             EEEEECCCSSC---CCCTTSEEEEEEEEECTT--SCEE-ECTTT-TTCCEEEETTSTTSCHHHHHHHHHSCTTEEEEEEE
T ss_pred             EEEEeccCCCc---cCCCCCEEEEEEEEEECC--CCEE-EccCc-CCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEEEE
Confidence            55999999974   246899999999999854  8988 55544 46899999999999999999999999999999999


Q ss_pred             cCCCccccCCCCCCCCCCcceEEEEEEccc
Q 015006          139 PPDYAYDKFLRPANVPEGAHIQWEIELLGF  168 (414)
Q Consensus       139 ~~~~~yg~~~~~~~ip~~~~l~~eieL~~~  168 (414)
                      ||.++||..+.++.||+|++++|+|+|+++
T Consensus       101 p~~~aYG~~~~~~~Ip~~~~l~f~VeL~~i  130 (130)
T 2lgo_A          101 PYQLAYGERGYPPVIPPKATLVFEVELLAV  130 (130)
T ss_dssp             CTTTSTTTTCCSTTSCSSCCEEEEEEEEEC
T ss_pred             CcHHHCCCCCCCCCcCCCCeEEEEEEEEEC
Confidence            999999999988889999999999999864

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.83  E-value=7.3e-20  Score=151.69  Aligned_cols=113  Identities=28%  Similarity=0.552  Sum_probs=106.8

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      .|..++++|+.+|+.|+|.+|+..|++|+.    +.|.+           ..+|+|+|.||+++|+|++|+.+|.+||++
T Consensus        12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~   76 (126)
T 4gco_A           12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVK----RDPEN-----------AILYSNRAACLTKLMEFQRALDDCDTCIRL   76 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHhhHHHhhccHHHHHHHHHHHHHh
Confidence            588999999999999999999999999999    67777           679999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 015006          265 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  313 (414)
Q Consensus       265 dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~  313 (414)
                      +|+++++|+++|.++..+|++++|+.+|++|++++|+| ..++..|..|
T Consensus        77 ~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~-~~a~~~l~~~  124 (126)
T 4gco_A           77 DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSN-EEAREGVRNC  124 (126)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCC-HHHHHHHHHh
Confidence            99999999999999999999999999999999999998 6787777665

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.82  E-value=2.3e-20  Score=159.70  Aligned_cols=140  Identities=17%  Similarity=0.161  Sum_probs=117.8

Q ss_pred             hhhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHH-HHHhhhhhHHHHHHHHHHHHcCCHHHHHHH
Q 015006          179 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG-KVFVGKRNLLHLNVAACLLKLGECRKSIEA  257 (414)
Q Consensus       179 ~~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~-~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~  257 (414)
                      +-..+..|..++..|+.+|+.|+|++|+..|++||.+.+    .+++.. .........+|+|+|.|+.++|+|++|+.+
T Consensus         4 ~~~~~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p----~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~   79 (159)
T 2hr2_A            4 PLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISH----TMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHS   79 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT----TSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC----CCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHH
Confidence            333466899999999999999999999999999999544    321110 001122345999999999999999999999


Q ss_pred             HHHHHHh-------CCCcHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 015006          258 CNKVLDA-------NPAHVKGL----YRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESK  323 (414)
Q Consensus       258 ~~~al~~-------dp~~~ka~----~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~  323 (414)
                      |++||++       +|+++++|    ||+|.++..+|++++|+.+|++|++++|++ ..+...+..+++.++++.++
T Consensus        80 ~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d-~~~~~~~~~~~~~~~~~~~k  155 (159)
T 2hr2_A           80 ADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER-KGETPGKERMMEVAIDRIAQ  155 (159)
T ss_dssp             HHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC-CSCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHHHHHHHH
Confidence            9999999       99999999    999999999999999999999999999997 67888888888887766654

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A

Probab=99.81  E-value=1.5e-19  Score=169.97  Aligned_cols=120  Identities=30%  Similarity=0.589  Sum_probs=104.9

Q ss_pred             eEEEeeeeec--CCCceEEEEeecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHH
Q 015006           43 VHLIQVRDML--GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEG  120 (414)
Q Consensus        43 ~~~~~~~dv~--~dg~~~k~i~~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~g  120 (414)
                      ++| +..||+  .+++|.++++++|.|..   .|..|+.|+|||+|++.|  |++| +++.+ ++.|++|.+|.+.+++|
T Consensus        38 ~~~-~~~di~~~~~~gl~~~vl~~G~G~~---~~~~gd~V~v~Y~g~~~d--G~~f-dss~~-~~~p~~f~lG~g~vi~G  109 (280)
T 1q1c_A           38 LPM-EGVDISPKQDEGVLKVIKREGTGTE---MPMIGDRVFVHYTGWLLD--GTKF-DSSLD-RKDKFSFDLGKGEVIKA  109 (280)
T ss_dssp             ----CCEECCSSCSSSEEEEEEECCSSSC---CCCTTCEEEEEEEEEETT--SCEE-EESTT-SSSCEEEETTTTSSCHH
T ss_pred             cCc-cccccccCCCCceEEEEEeCCCCCc---CCCCCCEEEEEEEEEECC--CCEE-Eeccc-CCCCEEEEECCcChhHH
Confidence            344 356888  88999999999999974   357899999999999855  9998 55543 46899999999999999


Q ss_pred             HHHHhhhcCCCCeEEEEecCCCccccCCCCCCCCCCcceEEEEEEcccCC
Q 015006          121 FEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEK  170 (414)
Q Consensus       121 le~~l~~M~~GE~~~v~i~~~~~yg~~~~~~~ip~~~~l~~eieL~~~~~  170 (414)
                      |+.+|.+|++||++.|+|||+++||..+.++.||++++++|+|+|+++..
T Consensus       110 ~e~aL~gm~~Ge~~~v~ipp~~aYG~~g~~~~Ip~~~~lvf~Vel~~i~~  159 (280)
T 1q1c_A          110 WDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKG  159 (280)
T ss_dssp             HHHHHTTCCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC
T ss_pred             HHHHHhcCCCCCEEEEEECcHHhCCCcCccCCCCCCCcEEEEEEeeeecc
Confidence            99999999999999999999999999998889999999999999998764

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0

Probab=99.81  E-value=8.7e-20  Score=163.81  Aligned_cols=104  Identities=24%  Similarity=0.299  Sum_probs=94.0

Q ss_pred             CCCceEEEEeecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCC
Q 015006           53 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGE  132 (414)
Q Consensus        53 ~dg~~~k~i~~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE  132 (414)
                      .+.+|.++++++|+|..    |..|+.|+|||+|++.|  |++| |++    +.|++|.+|  .+++||+.+|.+|++|+
T Consensus       115 ~~sGl~y~vl~~G~G~~----p~~gd~V~V~Y~g~l~d--G~vf-Dss----~~P~~f~lG--~vI~G~eeaL~gMk~Ge  181 (219)
T 3oe2_A          115 LADGILMTELTPGTGPK----PDANGRVEVRYVGRLPD--GKIF-DQS----TQPQWFRLD--SVISGWTSALQNMPTGA  181 (219)
T ss_dssp             CGGGCEEEEEECCCSCC----CCTTSEEEEEEEEECTT--SCEE-EEC----SSCEEEEGG--GSCHHHHHHHTTCCTTC
T ss_pred             CCCCeEEEEEecCCCcc----CCCCCEEEEEEEEEECC--CCEe-ecc----CCcEEEEec--chhHHHHHHHhCCCCCC
Confidence            45679999999999964    47899999999999876  9998 444    579999998  79999999999999999


Q ss_pred             eEEEEecCCCccccCCCCCCCCCCcceEEEEEEcccC
Q 015006          133 IALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE  169 (414)
Q Consensus       133 ~~~v~i~~~~~yg~~~~~~~ip~~~~l~~eieL~~~~  169 (414)
                      ++.|.|||++|||..+.++.|||+++|+|+|+|+++.
T Consensus       182 k~~v~IPp~lAYG~~g~~~~IPpnstLvFeVeLl~Ik  218 (219)
T 3oe2_A          182 KWRLVIPSDQAYGAEGAGDLIDPFTPLVFEIELIAVS  218 (219)
T ss_dssp             EEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             EEEEEECchhcCCCCCCCCCCCCCCeEEEEEEEEEEe
Confidence            9999999999999999888899999999999999874

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*

Probab=99.80  E-value=2.1e-19  Score=161.35  Aligned_cols=108  Identities=24%  Similarity=0.382  Sum_probs=95.5

Q ss_pred             CCCceEEEEeecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCC
Q 015006           53 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGE  132 (414)
Q Consensus        53 ~dg~~~k~i~~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE  132 (414)
                      ...++.++++++|+|..    |..|+.|+|||+|++.|  |++| ++++. ++.|++|.+|  .+++||+.+|.+|++|+
T Consensus       104 ~~sGl~y~vl~~G~G~~----p~~gD~V~V~Y~g~l~d--G~vf-dss~~-~g~p~~f~lg--~vI~G~eeaL~gMk~Ge  173 (213)
T 1fd9_A          104 LPSGLQYKVINSGNGVK----PGKSDTVTVEYTGRLID--GTVF-DSTEK-TGKPATFQVS--QVIPGWTEALQLMPAGS  173 (213)
T ss_dssp             CTTSCEEEEEECCCSCC----CCTTCEEEEEEEEEETT--SCEE-EEHHH-HCSCEEEEGG--GSCHHHHHHHTTCCTTC
T ss_pred             CCCccEEEEEecCCCcc----CCCCCEEEEEEEEEECC--CCEE-eeccc-cCCCEEEEcC--chhhHHHHHHcCCCCCC
Confidence            45578999999999964    46899999999999875  9998 55543 4689999994  79999999999999999


Q ss_pred             eEEEEecCCCccccCCCCCCCCCCcceEEEEEEcccCC
Q 015006          133 IALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEK  170 (414)
Q Consensus       133 ~~~v~i~~~~~yg~~~~~~~ip~~~~l~~eieL~~~~~  170 (414)
                      ++.|.|||+++||..+.++.||||++|+|+|+|+++..
T Consensus       174 k~~v~IP~~laYG~~g~~~~Ipp~stLiF~VeLl~v~~  211 (213)
T 1fd9_A          174 TWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLISVKK  211 (213)
T ss_dssp             EEEEEECGGGTTTTCCCSSSCCTTCCEEEEEEEEEEEC
T ss_pred             EEEEEECchhccCccCCCCCCCCCCeEEEEEEEEEEEc
Confidence            99999999999999998788999999999999998764

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.80  E-value=1.6e-18  Score=154.14  Aligned_cols=171  Identities=25%  Similarity=0.302  Sum_probs=132.5

Q ss_pred             EEEEEcccCCCCCCCCCchhhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChH-----HHHHHhhhhh
Q 015006          161 WEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDE-----EGKVFVGKRN  235 (414)
Q Consensus       161 ~eieL~~~~~~~~~~~~~~~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~-----e~~~~~~~~~  235 (414)
                      ....+..++...+.|.++.+++...+..+...|+.++..|+|.+|+..|.+++..    .|.+.+     .......+..
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~~~~~~~   88 (198)
T 2fbn_A           13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF----FIHTEEWDDQILLDKKKNIEI   88 (198)
T ss_dssp             ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TTTCTTCCCHHHHHHHHHHHH
T ss_pred             hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----HhcccccchhhHHHHHHHHHH
Confidence            3445566788888999999999999999999999999999999999999999994    343320     1111233446


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 015006          236 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  315 (414)
Q Consensus       236 ~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~  315 (414)
                      .++.|+|.|++++++|++|+.+|.+++.++|.++++++++|.++..+|++++|+..|+++++++|++ ..+...+..+..
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~  167 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN-LDIRNSYELCVN  167 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHH
Confidence            7999999999999999999999999999999999999999999999999999999999999999998 789999999999


Q ss_pred             HHHHHHHHHHHHHHhhccCCC
Q 015006          316 QRQEVESKARKQFKGLFDKKP  336 (414)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~  336 (414)
                      .+.+..+..+..++++|....
T Consensus       168 ~~~~~~~~~~~~~~~~f~~~~  188 (198)
T 2fbn_A          168 KLKEARKKDKLTFGGMFDKGP  188 (198)
T ss_dssp             HHHHHHC--------------
T ss_pred             HHHHHHHHHHHHHHHHhcccc
Confidence            998888888889999998654

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A

Probab=99.79  E-value=2e-19  Score=149.66  Aligned_cols=107  Identities=30%  Similarity=0.450  Sum_probs=93.8

Q ss_pred             CCceEEEEeecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhh------
Q 015006           54 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRL------  127 (414)
Q Consensus        54 dg~~~k~i~~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~------  127 (414)
                      +.+|.++++++|.|..+    ..|+.|+|||++++.+  |++| ++++. +++|++|.+|.+.+++||+.+|.+      
T Consensus        11 ~~Gl~~~~l~~G~G~~~----~~gd~V~v~Y~g~~~d--G~~f-dss~~-~~~p~~f~lG~~~~i~G~~~~L~G~~~~~~   82 (129)
T 1u79_A           11 PSGLAFCDKVVGYGPEA----VKGQLIKAHYVGKLEN--GKVF-DSSYN-RGKPLTFRIGVGEVIKGWDQGILGSDGIPP   82 (129)
T ss_dssp             TTSCEEEEEECCSSCBC----CTTCEEEEEEEEECTT--SCEE-EEHHH-HTSCEEEETTSSSSCHHHHHHHHCBTTBCC
T ss_pred             CCCeEEEEEEcCCCCCC----CCCCEEEEEEEEEECC--CCEE-EecCC-CCCCEEEEeCCCCccHHHHHHhcccccccc
Confidence            45689999999999644    6899999999999854  8998 55442 367999999999999999999988      


Q ss_pred             cCCCCeEEEEecCCCccccCCCC-----CCCCCCcceEEEEEEccc
Q 015006          128 MLPGEIALVTCPPDYAYDKFLRP-----ANVPEGAHIQWEIELLGF  168 (414)
Q Consensus       128 M~~GE~~~v~i~~~~~yg~~~~~-----~~ip~~~~l~~eieL~~~  168 (414)
                      |++||++.|.|||.++||..+.+     +.||+|++++|+|+|+++
T Consensus        83 m~~Ge~~~v~ip~~~aYG~~~~~~~~~~~~Ip~~~~l~f~vel~~i  128 (129)
T 1u79_A           83 MLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  128 (129)
T ss_dssp             CBTTCEEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             cCCCCEEEEEEChHHccCCCCCCccccCCcCCCCCeEEEEEEEEEe
Confidence            99999999999999999998863     579999999999999875

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A

Probab=99.78  E-value=9.7e-19  Score=158.14  Aligned_cols=104  Identities=30%  Similarity=0.536  Sum_probs=92.6

Q ss_pred             CCceEEEEeecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCCe
Q 015006           54 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI  133 (414)
Q Consensus        54 dg~~~k~i~~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~  133 (414)
                      ..++.++++++|.|..    |..||.|+|||+|++.|  |++| ++++. ++.|++|.+|  .+++||+.+|.+|++|++
T Consensus       120 ~sGl~y~vl~~G~G~~----p~~gD~V~V~Y~g~l~d--G~vf-dss~~-~g~p~~f~lg--~vI~G~eeaL~gMk~Gek  189 (224)
T 1q6h_A          120 STGLVYQVVEAGKGEA----PKDSDTVVVNYKGTLID--GKEF-DNSYT-RGEPLSFRLD--GVIPGWTEGLKNIKKGGK  189 (224)
T ss_dssp             TTSCEEEEEECCSSCC----CCTTCEEEEEEEEEETT--SCEE-EEGGG-GTSCEEEEGG--GSCHHHHHHGGGSCTTCE
T ss_pred             CCceEEEEEecccCcc----ccCCCEEEEEEEEEeCC--CCEE-eeccc-cCCCEEEEcC--CcchhHHHHHcCCCCCCE
Confidence            4578899999999974    46899999999999875  9998 55554 4689999994  799999999999999999


Q ss_pred             EEEEecCCCccccCCCCCCCCCCcceEEEEEEccc
Q 015006          134 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF  168 (414)
Q Consensus       134 ~~v~i~~~~~yg~~~~~~~ip~~~~l~~eieL~~~  168 (414)
                      +.|.|||+++||..+.++ ||+|++++|+|+|+++
T Consensus       190 ~~v~IP~~laYG~~g~~~-IPp~stLiF~VeL~~i  223 (224)
T 1q6h_A          190 IKLVIPPELAYGKAGVPG-IPPNSTLVFDVELLDV  223 (224)
T ss_dssp             EEEEECGGGTTTTTCBTT-BCTTCCEEEEEEEEEE
T ss_pred             EEEEECchhhcCcCCCCC-CCCCCEEEEEEEEEEe
Confidence            999999999999998765 9999999999999976

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.78  E-value=6.3e-19  Score=140.63  Aligned_cols=94  Identities=31%  Similarity=0.543  Sum_probs=84.7

Q ss_pred             CCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCCeEEEEecCCCccccCCCCCCC
Q 015006           74 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANV  153 (414)
Q Consensus        74 p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~~i  153 (414)
                      |..||.|+|||++++.+  |++| ++++. +++|++|.+|.+.+++||+.+|.+|++||++.|.|||+++||..+.++.|
T Consensus         6 ~~~gd~V~v~y~~~~~d--G~~~-d~s~~-~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~v~ip~~~ayG~~~~~~~I   81 (102)
T 2pbc_A            6 SRKGDVLHMHYTGKLED--GTEF-DSSLP-QNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGAPPKI   81 (102)
T ss_dssp             CCTTCEEEEEEEEECTT--SCEE-EESTT-TTCCEEEETTSSSSCHHHHTTSTTCCTTCEEEEEECGGGTTTTTCBTTTB
T ss_pred             CCCCCEEEEEEEEEECC--CCEE-EeCCC-CCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEEEECHHHCcCCCCCCCCc
Confidence            57899999999999754  9998 55543 46899999999999999999999999999999999999999999888889


Q ss_pred             CCCcceEEEEEEcccCCC
Q 015006          154 PEGAHIQWEIELLGFEKP  171 (414)
Q Consensus       154 p~~~~l~~eieL~~~~~~  171 (414)
                      |+|++++|+|+|+++...
T Consensus        82 p~~~~l~f~v~l~~v~~~   99 (102)
T 2pbc_A           82 PGGATLVFEVELLKIERR   99 (102)
T ss_dssp             CTTCCEEEEEEEEEEGGG
T ss_pred             CcCCeEEEEEEEEEeccc
Confidence            999999999999998653

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.75  E-value=9.6e-18  Score=164.70  Aligned_cols=156  Identities=26%  Similarity=0.480  Sum_probs=132.1

Q ss_pred             CchhhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCC-CCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHH
Q 015006          177 LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVN-PQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSI  255 (414)
Q Consensus       177 ~~~~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~-p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~  255 (414)
                      .+.++.+..+..++..|+.+++.|+|.+|+..|++|+.++.... ....++..........+|+|+|.||+++++|++|+
T Consensus       214 ~~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~  293 (370)
T 1ihg_A          214 KDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAV  293 (370)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHH
Confidence            35788899999999999999999999999999999998644210 00112222345566789999999999999999999


Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015006          256 EACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFD  333 (414)
Q Consensus       256 ~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  333 (414)
                      .+|.+||+++|+++++++++|.+|..+|++++|+.+|++|++++|++ ..+...+..+...+.+..++++..+++||+
T Consensus       294 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~-~~~~~~l~~~~~~~~~~~~a~k~~~~kmf~  370 (370)
T 1ihg_A          294 DSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED-KAIQAELLKVKQKIKAQKDKEKAAYAKMFA  370 (370)
T ss_dssp             HHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999998 789999999999999888888888888874

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.74  E-value=1.4e-17  Score=137.84  Aligned_cols=115  Identities=21%  Similarity=0.354  Sum_probs=102.4

Q ss_pred             hhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015006          182 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV  261 (414)
Q Consensus       182 ~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~a  261 (414)
                      ..+.|..+++.|+.+|+.|+|.+|+..|++||.    +.|.+           ..+|+|+|.||+++|+|++|+.+|.++
T Consensus         4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~----~~p~~-----------~~~~~nlg~~~~~~~~~~~A~~~~~~a   68 (127)
T 4gcn_A            4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIE----LDPSN-----------ITFYNNKAAVYFEEKKFAECVQFCEKA   68 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence            345788999999999999999999999999999    67777           779999999999999999999999999


Q ss_pred             HHhCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 015006          262 LDANPAH-------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  313 (414)
Q Consensus       262 l~~dp~~-------~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~  313 (414)
                      |+++|++       +++|+++|.++..+|++++|+..|+++|.++|+  ++....|..+
T Consensus        69 l~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~--~~~~~~l~~l  125 (127)
T 4gcn_A           69 VEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD--PELVKKVKEL  125 (127)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC--HHHHHHHHHH
T ss_pred             HHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC--HHHHHHHHHh
Confidence            9999866       479999999999999999999999999999987  3454444444

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.71  E-value=9.4e-17  Score=131.67  Aligned_cols=116  Identities=26%  Similarity=0.405  Sum_probs=107.6

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      .+..+...|+.+++.|+|.+|+..|.+++.    ..|.+           ..+++|+|.|++++|+|++|+.++.+++++
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   67 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIK----RAPED-----------ARGYSNRAAALAKLMSFPEAIADCNKAIEK   67 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHH----hCCCC-----------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            478899999999999999999999999999    67766           679999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHH
Q 015006          265 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD------KSSEPDATAALSKLKKQ  316 (414)
Q Consensus       265 dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~------P~n~~~~~~~l~~~~~~  316 (414)
                      +|+++.+++++|.++..+|++++|+..|+++++++      |++ ..+...+..+..+
T Consensus        68 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~-~~~~~~l~~~~~~  124 (126)
T 3upv_A           68 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA-REIDQLYYKASQQ  124 (126)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTH-HHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhH-HHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999      886 6788777777654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.66  E-value=9.3e-16  Score=131.90  Aligned_cols=120  Identities=19%  Similarity=0.322  Sum_probs=106.8

Q ss_pred             hHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015006          183 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  262 (414)
Q Consensus       183 ~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al  262 (414)
                      ...+..+...|+.++..|+|.+|+..|.+++.    +.|.+           ..+++|+|.||+++++|++|+.++.+++
T Consensus         8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~al   72 (164)
T 3sz7_A            8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALS----IAPAN-----------PIYLSNRAAAYSASGQHEKAAEDAELAT   72 (164)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCcC-----------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            34688999999999999999999999999999    56666           6799999999999999999999999999


Q ss_pred             HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH--HHHHHHHHHHHHH
Q 015006          263 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPD--ATAALSKLKKQRQ  318 (414)
Q Consensus       263 ~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~--~~~~l~~~~~~~~  318 (414)
                      +++|+++.+|+++|.++..+|++++|+..|+++++++|++ ..  +...+..++.++.
T Consensus        73 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~l~~~~~~~~  129 (164)
T 3sz7_A           73 VVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNG-GSDAMKRGLETTKRKIE  129 (164)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999987 34  4445555544443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.64  E-value=2.6e-15  Score=128.33  Aligned_cols=103  Identities=11%  Similarity=0.142  Sum_probs=98.3

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      .+..+...|..+++.|+|.+|+..|++++.    +.|.+           ..+++|+|.|+..+|+|++|+..|.+++++
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~----~~P~~-----------~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l   99 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCI----YDFYN-----------VDYIMGLAAIYQIKEQFQQAADLYAVAFAL   99 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence            467788999999999999999999999999    78887           679999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          265 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       265 dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      +|+++.+++++|.+|..+|++++|+..|++|+++.|+.
T Consensus       100 ~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~  137 (151)
T 3gyz_A          100 GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE  137 (151)
T ss_dssp             SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred             CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence            99999999999999999999999999999999999985

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.60  E-value=6.1e-15  Score=121.91  Aligned_cols=120  Identities=26%  Similarity=0.418  Sum_probs=107.9

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +..+...|..++..|+|..|+..|.+++.    ..|.+           ..+++++|.|++.+++|++|+..+.+++.++
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~   73 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAIT----RNPLV-----------AVYYTNRALCYLKMQQPEQALADCRRALELD   73 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHh----hCcCc-----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            67788999999999999999999999999    56666           6799999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHHHHHHH
Q 015006          266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS-----SEPDATAALSKLKKQRQEVE  321 (414)
Q Consensus       266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~-----n~~~~~~~l~~~~~~~~~~~  321 (414)
                      |.++.+++++|.++..+|++++|+..|+++++++|+     + ..+...+..+..+.....
T Consensus        74 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~-~~~~~~l~~~~~~~~~~~  133 (137)
T 3q49_B           74 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFG-DDIPSALRIAKKKRWNSI  133 (137)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCT-THHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999987     4 567777777766554433

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.60  E-value=1.1e-14  Score=122.17  Aligned_cols=119  Identities=14%  Similarity=0.235  Sum_probs=105.0

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      .+..+...|..+++.|+|.+|+..|.+++.    ..|.+           ..++.++|.|+.++|+|++|+..+.+++.+
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   81 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQKIFQALCM----LDHYD-----------ARYFLGLGACRQSLGLYEQALQSYSYGALM   81 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHH----hCCcc-----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            356677899999999999999999999999    67777           678999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 015006          265 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQE  319 (414)
Q Consensus       265 dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~  319 (414)
                      +|+++.+++.+|.++..+|++++|+..|+++++++|++ +........+...+..
T Consensus        82 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~l~~  135 (142)
T 2xcb_A           82 DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ-PAHEALAARAGAMLEA  135 (142)
T ss_dssp             CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC-GGGHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999987 4455555555544443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.60  E-value=8.7e-15  Score=124.35  Aligned_cols=116  Identities=13%  Similarity=0.214  Sum_probs=102.5

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      .+..+...|..++..|+|.+|+..|.+++.    ..|.+           ..+++++|.|+..+|+|++|+..|.+++.+
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l   84 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCV----LDHYD-----------SRFFLGLGACRQAMGQYDLAIHSYSYGAVM   84 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHH----cCccc-----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            466778899999999999999999999999    67777           678999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 015006          265 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  316 (414)
Q Consensus       265 dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~  316 (414)
                      +|+++.+++++|.++..+|++++|+..|+++++++|++ +........+...
T Consensus        85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~  135 (148)
T 2vgx_A           85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANX-PEFXELSTRVSSM  135 (148)
T ss_dssp             STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHH
T ss_pred             CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC-CcchHHHHHHHHH
Confidence            99999999999999999999999999999999999987 3343334444333

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.57  E-value=1.2e-14  Score=123.62  Aligned_cols=112  Identities=14%  Similarity=0.102  Sum_probs=85.9

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +..+...|+.+++.|+|++|+..|++++.    +.|.+           ..+|.++|.||.++|++++|+.++.++++++
T Consensus        31 ~~~~~~la~~y~~~~~~~~A~~~~~~al~----~~p~~-----------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~   95 (150)
T 4ga2_A           31 SIKGFYFAKLYYEAKEYDLAKKYICTYIN----VQERD-----------PKAHRFLGLLYELEENTDKAVECYRRSVELN   95 (150)
T ss_dssp             HTTHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCchHHHHHHHHHHHHhC
Confidence            33445677888888888888888888888    56766           5678888888888888888888888888888


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhhCCCCHHHHHHHHHHH
Q 015006          266 PAHVKGLYRRGMAYMALGEFEEAQRD-FEMMMKVDKSSEPDATAALSKL  313 (414)
Q Consensus       266 p~~~ka~~r~g~a~~~l~~~~eA~~~-~~~al~l~P~n~~~~~~~l~~~  313 (414)
                      |+++.+++++|.++..+|++++|... +++|++++|+| +.+...+..+
T Consensus        96 p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~-~~~~~l~~~l  143 (150)
T 4ga2_A           96 PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGS-PAVYKLKEQL  143 (150)
T ss_dssp             TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTC-HHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCC-HHHHHHHHHH
Confidence            88888888888888888888776655 47888888887 4554444433

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.57  E-value=4.7e-15  Score=143.56  Aligned_cols=102  Identities=10%  Similarity=0.041  Sum_probs=57.6

Q ss_pred             HHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 015006          187 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  266 (414)
Q Consensus       187 ~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp  266 (414)
                      ..+.+.|..+++.|+|.+|+..|.++|.    +.|.+           ..+|+|+|.||+.+++|++|+.++.++++++|
T Consensus       231 ~~~~nla~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p  295 (338)
T 2if4_A          231 PCHLNIAACLIKLKRYDEAIGHCNIVLT----EEEKN-----------PKALFRRGKAKAELGQMDSARDDFRKAQKYAP  295 (338)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHTTTCHHHHHHHHHHTTC---
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence            3678899999999999999999999999    56766           67999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCCCH
Q 015006          267 AHVKGLYRRGMAY-MALGEFEEAQRDFEMMMKVDKSSE  303 (414)
Q Consensus       267 ~~~ka~~r~g~a~-~~l~~~~eA~~~~~~al~l~P~n~  303 (414)
                      ++..++..++.+. ...+..++|...|.+++.+.|++.
T Consensus       296 ~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~  333 (338)
T 2if4_A          296 DDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGG  333 (338)
T ss_dssp             --------------------------------------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence            9999999999984 455678899999999999999873

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.54  E-value=1.2e-14  Score=123.73  Aligned_cols=112  Identities=11%  Similarity=0.054  Sum_probs=96.7

Q ss_pred             hhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 015006          192 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG  271 (414)
Q Consensus       192 ~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka  271 (414)
                      .|..+..+|++++|+..|.+++.    ..|.+           ...++++|.+|+++|+|++|+.++.++|+++|+++.+
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~----~~p~~-----------~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a   67 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTP----SPRQK-----------SIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKA   67 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSC----SHHHH-----------HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcc----cCccc-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence            57888999999999999999998    33322           5578899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 015006          272 LYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQE  319 (414)
Q Consensus       272 ~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~  319 (414)
                      |+.+|.++..+|++++|+..|++|++++|++ ..+...+..+......
T Consensus        68 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~  114 (150)
T 4ga2_A           68 HRFLGLLYELEENTDKAVECYRRSVELNPTQ-KDLVLKIAELLCKNDV  114 (150)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHcCchHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCC
Confidence            9999999999999999999999999999998 6788888877655443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.53  E-value=1.3e-13  Score=109.72  Aligned_cols=114  Identities=26%  Similarity=0.461  Sum_probs=104.1

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      .+..+...|..++..|+|.+|+..|.+++.    ..|.+           ..++.++|.+++.+++|.+|+..+.+++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   67 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIK----LDPHN-----------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDL   67 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHH----HCCCc-----------HHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence            467788999999999999999999999999    56655           668999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          265 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       265 dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                      +|.++.+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+.
T Consensus        68 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~  116 (118)
T 1elw_A           68 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN-PQLKEGLQNME  116 (118)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC-HHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC-HHHHHHHHHhh
Confidence            99999999999999999999999999999999999998 56766666654

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.52  E-value=6.8e-13  Score=112.62  Aligned_cols=120  Identities=27%  Similarity=0.459  Sum_probs=108.5

Q ss_pred             hhhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHH
Q 015006          179 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEAC  258 (414)
Q Consensus       179 ~~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~  258 (414)
                      .......+..+...|..++..|+|..|+..|.+++.    ..|.+           ..++.++|.|+..+++|.+|+..+
T Consensus         6 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----~~~~~-----------~~~~~~~a~~~~~~~~~~~A~~~~   70 (166)
T 1a17_A            6 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIE----LNPSN-----------AIYYGNRSLAYLRTECYGYALGDA   70 (166)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTC-----------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCCCC-----------hHHHHHHHHHHHHcCCHHHHHHHH
Confidence            356677899999999999999999999999999999    55655           678999999999999999999999


Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          259 NKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       259 ~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                      .+++.++|.++.+++++|.++..+|++++|+..|+++++++|.+ ..+...+..+.
T Consensus        71 ~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~~~~~~  125 (166)
T 1a17_A           71 TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD-KDAKMKYQECN  125 (166)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHH
T ss_pred             HHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998 55665555553

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.51  E-value=2.2e-13  Score=122.05  Aligned_cols=125  Identities=14%  Similarity=0.118  Sum_probs=102.6

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHH-----HhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKV-----FVGKRNLLHLNVAACLLKLGECRKSIEACNK  260 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~-----~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~  260 (414)
                      +..+..+|..++..|+|.+|+..|.+++.    ..|.+.+-.-.     .......+++++|.+|.++|+|++|+..+.+
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~   79 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIA----LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKE   79 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            55677889999999999999999999999    45544210000     0011223344499999999999999999999


Q ss_pred             HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 015006          261 VLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  315 (414)
Q Consensus       261 al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~  315 (414)
                      +++++|+++.+++++|.++..+|++++|+..|+++++++|++ ..+...+..+.-
T Consensus        80 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~-~~a~~~lg~~~~  133 (208)
T 3urz_A           80 LLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN-LAANIFLGNYYY  133 (208)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHH
T ss_pred             HHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998 678878877653

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=4.6e-13  Score=111.45  Aligned_cols=116  Identities=31%  Similarity=0.489  Sum_probs=103.7

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +..+...|..++..|+|..|+..|.+++.    ..|.+        .....++.++|.|++++++|++|+..+.+++.++
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~----~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~   95 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALG----LDATP--------QDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD   95 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHT----SCCCH--------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHH----Hcccc--------hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence            67788999999999999999999999998    55543        1235789999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                      |.++.+++++|.++..+|++++|+..|+++++++|++ ..+...+..+.
T Consensus        96 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~  143 (148)
T 2dba_A           96 GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN-KVFQEALRNIS  143 (148)
T ss_dssp             SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSC-HHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHH
Confidence            9999999999999999999999999999999999998 56666666553

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.49  E-value=3.1e-13  Score=143.31  Aligned_cols=116  Identities=19%  Similarity=0.301  Sum_probs=75.8

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      .+..+.+.|+.+.+.|+|++|+..|++||+    +.|.+           ..+|+|+|.+|.++|++++|+.++++||++
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~----l~P~~-----------~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l   72 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALE----VFPEF-----------AAAHSNLASVLQQQGKLQEALMHYKEAIRI   72 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            467777888888888888888888888888    56665           445666666666666666666666666666


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 015006          265 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  316 (414)
Q Consensus       265 dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~  316 (414)
                      +|+++.+|+++|.++..+|++++|++.|++|++++|++ ..+...|..+...
T Consensus        73 ~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~-~~a~~~Lg~~~~~  123 (723)
T 4gyw_A           73 SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF-ADAHSNLASIHKD  123 (723)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Confidence            66666666666666666666666666666666666655 4455555554433

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.48  E-value=3.9e-13  Score=109.56  Aligned_cols=114  Identities=25%  Similarity=0.470  Sum_probs=103.9

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      .+..+...|..++..|+|.+|+..|.+++.    ..|.+           ..++.++|.++..+++|++|+..+.+++++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~----~~~~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~   79 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIK----RNPKD-----------AKLYSNRAACYTKLLEFQLALKDCEECIQL   79 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHT----TCTTC-----------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCc-----------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            477888999999999999999999999999    56665           678999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          265 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       265 dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                      +|.++.+++++|.++..+|++++|+..|+++++++|.+ ..+...+..+.
T Consensus        80 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~  128 (133)
T 2lni_A           80 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC-KEAADGYQRCM  128 (133)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG-THHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCc-hHHHHHHHHHH
Confidence            99999999999999999999999999999999999987 55666666554

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.48  E-value=1.4e-12  Score=105.45  Aligned_cols=120  Identities=26%  Similarity=0.385  Sum_probs=106.9

Q ss_pred             hhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015006          181 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK  260 (414)
Q Consensus       181 e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~  260 (414)
                      .....+..+...|..++..|+|..|+..|.+++.    ..|.+           ..++.++|.++..+++|++|+..+.+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~   71 (131)
T 2vyi_A            7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIE----LNPAN-----------AVYFCNRAAAYSKLGNYAGAVQDCER   71 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHH----cCCCC-----------HHHHHHHHHHHHHhhchHHHHHHHHH
Confidence            3445688899999999999999999999999999    45555           56899999999999999999999999


Q ss_pred             HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 015006          261 VLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  316 (414)
Q Consensus       261 al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~  316 (414)
                      ++.++|.++.+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+...
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~  126 (131)
T 2vyi_A           72 AICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDN-ETYKSNLKIAELK  126 (131)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHH
T ss_pred             HHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccc-hHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999997 5666666665443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.48  E-value=1.3e-13  Score=112.83  Aligned_cols=99  Identities=11%  Similarity=0.025  Sum_probs=89.1

Q ss_pred             HHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 015006          189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  268 (414)
Q Consensus       189 ~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~  268 (414)
                      +...|..+++.|+|.+|+..|.+++.    ..|.+           ..+++++|.|+..+|++.+|+..+.++++++|++
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~----~~P~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~   84 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQ----KEPER-----------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD   84 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            45678888999999999999999999    67777           6799999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          269 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       269 ~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      +.+++.+|.++..+|++++|+..|+++++++|++
T Consensus        85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~  118 (121)
T 1hxi_A           85 IAVHAALAVSHTNEHNANAALASLRAWLLSQPQY  118 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence            9999999999999999999999999999999986

>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1

Probab=99.48  E-value=7.1e-14  Score=112.91  Aligned_cols=82  Identities=16%  Similarity=0.282  Sum_probs=70.4

Q ss_pred             CCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCCeEEEEec-CCCccccCCCCCC
Q 015006           74 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCP-PDYAYDKFLRPAN  152 (414)
Q Consensus        74 p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~~v~i~-~~~~yg~~~~~~~  152 (414)
                      |..||.|+|+|+|++ |  |++| +++   .++|+.|.+|.+.+++||+.+|.+|++||++.|.|+ |.. ||..+.   
T Consensus        30 ~~~gD~V~v~Y~g~~-d--G~~f-dss---~~~p~~f~lG~g~vi~G~ee~L~Gmk~Ge~~~v~i~fP~~-Yg~~~~---   98 (113)
T 1hxv_A           30 LANGDIAIIDFTGIV-D--NKKL-ASA---SAQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSD-YHVKEL---   98 (113)
T ss_dssp             CCSSEEEEEEEEEEE-T--TEEC-STT---CCSEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTT-SSSSGG---
T ss_pred             CCCCCEEEEEEEEEE-C--CEEc-ccC---CccCEEEEECCCChhHHHHHHHCCCCCCCEEEEEEeCchh-hCcCCC---
Confidence            468999999999997 5  8988 555   367999999999999999999999999999999995 444 776552   


Q ss_pred             CCCCcceEEEEEEccc
Q 015006          153 VPEGAHIQWEIELLGF  168 (414)
Q Consensus       153 ip~~~~l~~eieL~~~  168 (414)
                        +|++++|+|+|+++
T Consensus        99 --~g~~l~F~V~l~~V  112 (113)
T 1hxv_A           99 --QSKPVTFEVVLKAI  112 (113)
T ss_dssp             --GSCCCEEEEEECCB
T ss_pred             --CCCEEEEEEEEEEE
Confidence              57899999999876

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.47  E-value=5.4e-13  Score=108.11  Aligned_cols=118  Identities=23%  Similarity=0.380  Sum_probs=105.5

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      .+..+...|..++..|+|..|+..|.+++.    ..|.+           ..++.++|.++..+++|++|+..+.+++.+
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~----~~~~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~   67 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKE----LDPTN-----------MTYITNQAAVYFEKGDYNKCRELCEKAIEV   67 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHh----cCCcc-----------HHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence            467788999999999999999999999999    45555           578999999999999999999999999999


Q ss_pred             CCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 015006          265 NPAH-------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQE  319 (414)
Q Consensus       265 dp~~-------~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~  319 (414)
                      .|.+       +.+++++|.++..+|++++|+..|++++++.|+  ..+...+..+...+.+
T Consensus        68 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~  127 (131)
T 1elr_A           68 GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT--PDVLKKCQQAEKILKE  127 (131)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHH
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHHH
Confidence            9877       999999999999999999999999999999994  5677777777665543

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.47  E-value=1.6e-13  Score=116.98  Aligned_cols=105  Identities=20%  Similarity=0.259  Sum_probs=92.9

Q ss_pred             ccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCC
Q 015006          198 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC----------RKSIEACNKVLDANPA  267 (414)
Q Consensus       198 k~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~----------~~A~~~~~~al~~dp~  267 (414)
                      +.+.|++|+..|.+++.    +.|.+           ..+++|+|.|+..++++          ++|+..|++||+++|+
T Consensus        14 r~~~feeA~~~~~~Ai~----l~P~~-----------aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~   78 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYK----SNPLD-----------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK   78 (158)
T ss_dssp             HHHHHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHhHHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC
Confidence            44689999999999999    78888           67999999999999876          4999999999999999


Q ss_pred             cHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 015006          268 HVKGLYRRGMAYMALG-----------EFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  318 (414)
Q Consensus       268 ~~ka~~r~g~a~~~l~-----------~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~  318 (414)
                      ++.|||++|.||..+|           +|++|+..|++|++++|++ ...+..+..+.+...
T Consensus        79 ~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~-~~y~~al~~~~ka~e  139 (158)
T 1zu2_A           79 KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN-THYLKSLEMTAKAPQ  139 (158)
T ss_dssp             CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHTHHH
T ss_pred             cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHhCHh
Confidence            9999999999999985           8999999999999999998 667777766654443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.46  E-value=1e-12  Score=107.20  Aligned_cols=113  Identities=17%  Similarity=0.202  Sum_probs=97.8

Q ss_pred             HHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 015006          189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  268 (414)
Q Consensus       189 ~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~  268 (414)
                      +...|..++..|+|.+|+..|.+++.    ..|.+.        ....+++++|.|++++|+|++|+..+.+++..+|++
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~----~~p~~~--------~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~   72 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLE----LYPNGV--------YTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH   72 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH----HCSSST--------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHH----HCCCCc--------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC
Confidence            45678889999999999999999999    455541        123688999999999999999999999999999999


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          269 ---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       269 ---~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                         +.+++++|.++..+|++++|+..|+++++..|++ ..+...+..+.
T Consensus        73 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~a~~~l~  120 (129)
T 2xev_A           73 DKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGS-DAARVAQERLQ  120 (129)
T ss_dssp             TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTS-HHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-hHHHHHHHHHH
Confidence               8999999999999999999999999999999997 45555444443

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}

Probab=99.46  E-value=1.1e-13  Score=119.23  Aligned_cols=71  Identities=21%  Similarity=0.302  Sum_probs=62.7

Q ss_pred             CCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCCeEEEEecCCCccccCC
Q 015006           74 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFL  148 (414)
Q Consensus        74 p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~~v~i~~~~~yg~~~  148 (414)
                      +..|+.|+|||+|++.+  |++| |+++. +++|++|.+|.+.+++||+.+|.+|++||++.|.|||++|||...
T Consensus        25 i~~gd~V~v~Y~g~l~d--G~vf-Dss~~-~~~P~~f~lG~g~vipG~eeaL~gm~~Ge~~~v~Ipp~~AYG~~~   95 (169)
T 4dt4_A           25 VQSNSAVLVHFTLKLDD--GTTA-ESTRN-NGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAAFGVPS   95 (169)
T ss_dssp             CCTTCEEEEEEEEEETT--SCEE-EEHHH-HTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEECGGGTTCCCC
T ss_pred             CCCCCEEEEEEEEEECC--CCEE-EecCC-CCCCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence            46899999999999865  9998 55543 358999999999999999999999999999999999999999643

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.46  E-value=1e-13  Score=133.98  Aligned_cols=206  Identities=12%  Similarity=0.105  Sum_probs=140.8

Q ss_pred             ccccCCcCcEEEEEEcCCCcCCCCCCC--CCCCCCeeeEEEEeeEEEeeeeecCCCceEEEEeecccCCCCCCCCCCCCe
Q 015006            2 GIGTMTREEKAVIYVTSQYLTPSPLMP--VVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSL   79 (414)
Q Consensus         2 ~~~~m~~Ge~~~~~i~~~~~~g~~~~~--~ip~~~~l~~~vel~~~~~~~dv~~dg~~~k~i~~~G~g~~~~~~p~~~~~   79 (414)
                      ||.+|++||++.|.|+|+|+||..+.+  .||+++++.|+++|.++....+.+.      +.+..    .    |.   .
T Consensus        84 al~~~~~Ge~~~l~i~p~~ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~------~a~~~----~----p~---~  146 (336)
T 1p5q_A           84 AIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWE------MNSEE----K----LE---Q  146 (336)
T ss_dssp             HHTTCCTTCEEEEEECTTTTTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGG------CCHHH----H----HH---H
T ss_pred             HHhcCCCCCeEEEEECCccccCcCCCCccCCCCCCeEEEEEEEeecccccchhc------CCHHH----H----HH---H
Confidence            688999999999999999999986653  6999999999999999864322110      00000    0    00   0


Q ss_pred             EEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCC-CchHHHHHHhhhcCCCCeEEEEecCCCccccCCCCCCCCCCcc
Q 015006           80 LCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEG-LVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAH  158 (414)
Q Consensus        80 v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~-~v~~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~~ip~~~~  158 (414)
                      +..++     . -|...+             ..|+- ..+..++.++...           |..              ..
T Consensus       147 a~~~~-----~-~g~~~~-------------~~g~~~~A~~~y~~Al~~~-----------p~~--------------~~  182 (336)
T 1p5q_A          147 STIVK-----E-RGTVYF-------------KEGKYKQALLQYKKIVSWL-----------EYE--------------SS  182 (336)
T ss_dssp             HHHHH-----H-HHHHHH-------------HHTCHHHHHHHHHHHHHHT-----------TTC--------------CC
T ss_pred             HHHHH-----H-HHHHHH-------------HCCCHHHHHHHHHHHHHHh-----------hcc--------------cc
Confidence            00000     0 011111             11211 1333444444321           110              00


Q ss_pred             eEEEEEEcccCCCCCCCCCchhhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHH
Q 015006          159 IQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLH  238 (414)
Q Consensus       159 l~~eieL~~~~~~~~~~~~~~~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~  238 (414)
                               +.     ......-.-..+..+...|..+++.|+|.+|+..|.+|+.    +.|.+           ..++
T Consensus       183 ---------~~-----~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~a~  233 (336)
T 1p5q_A          183 ---------FS-----NEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE----LDSNN-----------EKGL  233 (336)
T ss_dssp             ---------CC-----SHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHH
T ss_pred             ---------CC-----hHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCc-----------HHHH
Confidence                     00     0000011112367888999999999999999999999999    57766           6799


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHh
Q 015006          239 LNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQ-RDFEMMMK  297 (414)
Q Consensus       239 ~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~-~~~~~al~  297 (414)
                      +|+|.||+.+++|++|+.++.++++++|++..+++.+|.++..++++++|. ..|++++.
T Consensus       234 ~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~  293 (336)
T 1p5q_A          234 SRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE  293 (336)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999994 45555553

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.44  E-value=5.4e-13  Score=125.50  Aligned_cols=102  Identities=25%  Similarity=0.443  Sum_probs=96.8

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +..+...|+.+++.|+|.+|+..|.+|+.    ..|.+           ..+++|+|.||+++|+|++|+.++.++++++
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~   68 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAIT----RNPLV-----------AVYYTNRALCYLKMQQPEQALADCRRALELD   68 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCcc-----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            56788999999999999999999999999    56766           6799999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      |+++++++++|.++..+|++++|+..|+++++++|++
T Consensus        69 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           69 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            9999999999999999999999999999999999865

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.44  E-value=2e-12  Score=116.61  Aligned_cols=102  Identities=15%  Similarity=0.265  Sum_probs=95.5

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCC-CChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNP-QDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p-~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      +..+...|..++..|+|.+|+..|.+++.    ..| .+           ..+++++|.|+.++|+|++|+.++.+++++
T Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~~~~~-----------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~   71 (228)
T 4i17_A            7 PNQLKNEGNDALNAKNYAVAFEKYSEYLK----LTNNQD-----------SVTAYNCGVCADNIKKYKEAADYFDIAIKK   71 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HTTTCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHh----ccCCCC-----------cHHHHHHHHHHHHhhcHHHHHHHHHHHHHh
Confidence            36788899999999999999999999999    455 44           468888999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          265 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       265 dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      +|.++.+++.+|.++..+|++++|+..|+++++++|++
T Consensus        72 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~  109 (228)
T 4i17_A           72 NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGN  109 (228)
T ss_dssp             TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence            99999999999999999999999999999999999998

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.43  E-value=1.3e-12  Score=117.82  Aligned_cols=113  Identities=23%  Similarity=0.295  Sum_probs=79.0

Q ss_pred             HHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 015006          187 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  266 (414)
Q Consensus       187 ~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp  266 (414)
                      ..+...|..+++.|+|.+|+..|++++.    ..|.+           ..+++++|.++.++|++++|+..+.++++++|
T Consensus         6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P   70 (217)
T 2pl2_A            6 QNPLRLGVQLYALGRYDAALTLFERALK----ENPQD-----------PEALYWLARTQLKLGLVNPALENGKTLVARTP   70 (217)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHT----TSSSC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            3455677777788888888888888887    66666           45666777777777777777777777777777


Q ss_pred             CcHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 015006          267 AHVKGLYRRGMAYMAL-----------GEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  315 (414)
Q Consensus       267 ~~~ka~~r~g~a~~~l-----------~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~  315 (414)
                      +++.+++.+|.++..+           |++++|+..|+++++++|++ ..+...+..+..
T Consensus        71 ~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~-~~~~~~lg~~~~  129 (217)
T 2pl2_A           71 RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY-APLHLQRGLVYA  129 (217)
T ss_dssp             TCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHH
Confidence            7777777777777777           77777777777777777766 455555555543

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.42  E-value=1.2e-12  Score=132.59  Aligned_cols=117  Identities=26%  Similarity=0.443  Sum_probs=106.9

Q ss_pred             HHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015006          184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  263 (414)
Q Consensus       184 ~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~  263 (414)
                      +.+..+...|+.+++.|+|.+|+..|++|+.    ..|.+           ..++.|+|.||+++++|++|+.++.+|++
T Consensus         4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~----~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~   68 (477)
T 1wao_1            4 KRAEELKTQANDYFKAKDYENAIKFYSQAIE----LNPSN-----------AIYYGNRSLAYLRTECYGYALGDATRAIE   68 (477)
T ss_dssp             HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----hCCcc-----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            4677888999999999999999999999999    56666           67999999999999999999999999999


Q ss_pred             hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 015006          264 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  316 (414)
Q Consensus       264 ~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~  316 (414)
                      ++|.++.+++++|.+|..+|++++|+..|++|++++|++ ..+...+..+...
T Consensus        69 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~l~~~~~~  120 (477)
T 1wao_1           69 LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD-KDAKMKYQECNKI  120 (477)
T ss_dssp             SCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-TTHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999997 5677777666433

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.42  E-value=9.8e-13  Score=139.49  Aligned_cols=116  Identities=18%  Similarity=0.251  Sum_probs=107.5

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +..+.+.|+.+++.|+|.+|+..|++|++    +.|.+           ..+|+|+|.++..+|++++|+..+++||+++
T Consensus        43 ~~a~~nLg~~l~~~g~~~eA~~~~~~Al~----l~P~~-----------~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~  107 (723)
T 4gyw_A           43 AAAHSNLASVLQQQGKLQEALMHYKEAIR----ISPTF-----------ADAYSNMGNTLKEMQDVQGALQCYTRAIQIN  107 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            56678899999999999999999999999    67777           6799999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 015006          266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  317 (414)
Q Consensus       266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~  317 (414)
                      |+++.+|+++|.+|..+|++++|+..|++|++++|++ ..+...|..+...+
T Consensus       108 P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~-~~a~~~L~~~l~~~  158 (723)
T 4gyw_A          108 PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF-PDAYCNLAHCLQIV  158 (723)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-HHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHhhhhhHHHhc
Confidence            9999999999999999999999999999999999998 67888887776543

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.40  E-value=5.1e-13  Score=108.07  Aligned_cols=97  Identities=19%  Similarity=0.149  Sum_probs=82.1

Q ss_pred             ccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 015006          198 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGM  277 (414)
Q Consensus       198 k~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~  277 (414)
                      ..|+|.+|+..|.+++.    ..+.+        +....++.|+|.||+.+|+|++|+..+.++++++|+++.+++++|.
T Consensus         2 ~~g~~~~A~~~~~~al~----~~~~~--------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   69 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIA----SGLQG--------KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAM   69 (117)
T ss_dssp             -----CCCHHHHHHHHS----SCCCH--------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHH----cCCCC--------ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence            35889999999999999    43221        1226789999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 015006          278 AYMALGEFEEAQRDFEMMMKVDKSSEPDAT  307 (414)
Q Consensus       278 a~~~l~~~~eA~~~~~~al~l~P~n~~~~~  307 (414)
                      ++..+|++++|+..|++++.+.|++ +.+.
T Consensus        70 ~~~~~g~~~~A~~~~~~al~~~p~~-~~~~   98 (117)
T 3k9i_A           70 VLYNLGRYEQGVELLLKIIAETSDD-ETIQ   98 (117)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHCCC-HHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCc-HHHH
Confidence            9999999999999999999999998 4443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.39  E-value=1.9e-12  Score=127.39  Aligned_cols=115  Identities=8%  Similarity=0.037  Sum_probs=91.3

Q ss_pred             HHHHHhhhcccccccc-HHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          186 AEKIRVTGNRLFKEGK-FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~-y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      +..+..+|..++..|+ |.+|+..|.+||.    +.|.+           ..+|+|+|.++.++|+|.+|+.+|.+||++
T Consensus       131 ~~a~~~~g~~l~~~g~d~~eAl~~~~~al~----l~P~~-----------~~a~~~~g~~~~~~g~~~eAl~~~~kal~l  195 (382)
T 2h6f_A          131 YTVWHFRRVLLKSLQKDLHEEMNYITAIIE----EQPKN-----------YQVWHHRRVLVEWLRDPSQELEFIADILNQ  195 (382)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            4455667777777775 7777777777777    56665           668888888888888888888888888888


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 015006          265 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  316 (414)
Q Consensus       265 dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~  316 (414)
                      +|.+..+|+++|.++..+|++++|+.+|+++|+++|+| ..+...+..+...
T Consensus       196 dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~-~~a~~~lg~~l~~  246 (382)
T 2h6f_A          196 DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN-NSVWNQRYFVISN  246 (382)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Confidence            88888888888888888888888888888888888887 5677777666544

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.38  E-value=1.6e-11  Score=98.17  Aligned_cols=113  Identities=27%  Similarity=0.490  Sum_probs=101.6

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +..+...|..++..|+|..|+..|.+++.    ..|.+           ..++.++|.++...+++++|+..+.+++.++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~   73 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALE----LDPNN-----------AEAWYNLGNAYYKQGDYDEAIEYYQKALELD   73 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCcCc-----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence            56677889999999999999999999998    45554           5688999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                      |.++.+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+.
T Consensus        74 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~  121 (125)
T 1na0_A           74 PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAKQNLGNAK  121 (125)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHH
Confidence            9999999999999999999999999999999999998 56766666654

>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A

Probab=99.37  E-value=1.2e-12  Score=118.20  Aligned_cols=70  Identities=29%  Similarity=0.421  Sum_probs=61.1

Q ss_pred             CCCCeEEEEEEEEeecCCCceEeeeccCC------------CCCceEEEcCCCCchHHHHHHhhhcCCCCeEEEEecCCC
Q 015006           75 LHDSLLCVHYKGMLLNEEKKVFYDTRVDN------------DGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDY  142 (414)
Q Consensus        75 ~~~~~v~v~y~g~~~~~~g~~~~~s~~~~------------~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~~v~i~~~~  142 (414)
                      ..|+.|+|||+|++ +  |++| ||+...            .+.|+.|.+|.|.+++||+.+|.+|++||++.|.|||++
T Consensus         3 ~~Gd~V~v~Y~g~l-d--G~vf-Dss~~~~A~e~gi~~~~~~~~P~~f~lG~g~vIpG~eeaL~Gm~vGek~~v~Ippe~   78 (231)
T 3prb_A            3 EKGKMVKISYDGYV-D--GKLF-DTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEK   78 (231)
T ss_dssp             CTTCEEEEEEEEEE-T--TEEE-EESCHHHHHHTTCCCTTSCCSCEEEETTSSSSCHHHHHHHHTCCTTCEEEEEECGGG
T ss_pred             CCCCEEEEEEEEEE-C--CEEE-EeccchhcccccccccccCCCCEEEEeCCCcHHHHHHHHHcCCCCCCEEEEEeCcHH
Confidence            46899999999998 5  9998 555420            137999999999999999999999999999999999999


Q ss_pred             ccccCC
Q 015006          143 AYDKFL  148 (414)
Q Consensus       143 ~yg~~~  148 (414)
                      |||..+
T Consensus        79 AYGe~~   84 (231)
T 3prb_A           79 AFGKRD   84 (231)
T ss_dssp             TTCCCC
T ss_pred             hcCCCC
Confidence            999754

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.37  E-value=3.1e-12  Score=125.85  Aligned_cols=118  Identities=9%  Similarity=0.019  Sum_probs=108.3

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE-CRKSIEACNKVLD  263 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~-~~~A~~~~~~al~  263 (414)
                      .+..+...|..+++.|+|.+|+..|.++|.    +.|.+           ..+|+|+|.++..+|+ |++|+.++.++|.
T Consensus        96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~----l~P~~-----------~~a~~~~g~~l~~~g~d~~eAl~~~~~al~  160 (382)
T 2h6f_A           96 FRDVYDYFRAVLQRDERSERAFKLTRDAIE----LNAAN-----------YTVWHFRRVLLKSLQKDLHEEMNYITAIIE  160 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHH----hCccC-----------HHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Confidence            466778899999999999999999999999    78887           7899999999999997 9999999999999


Q ss_pred             hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 015006          264 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  318 (414)
Q Consensus       264 ~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~  318 (414)
                      ++|++..+|+++|.++..+|++++|+..|++||+++|+| ..+...+..+...+.
T Consensus       161 l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~-~~a~~~lg~~~~~~g  214 (382)
T 2h6f_A          161 EQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN-YHAWQHRQWVIQEFK  214 (382)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHT
T ss_pred             HCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC-HHHHHHHHHHHHHcC
Confidence            999999999999999999999999999999999999998 678877777765544

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.36  E-value=8e-12  Score=111.80  Aligned_cols=107  Identities=16%  Similarity=0.186  Sum_probs=92.4

Q ss_pred             hhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 015006          191 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK  270 (414)
Q Consensus       191 ~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~k  270 (414)
                      ..|..+++.|+|.+|+..|.+++.    +.|.+           ..+++++|.+++.+|++++|+.++.++++++|+++.
T Consensus        59 ~lg~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~  123 (208)
T 3urz_A           59 ELALAYKKNRNYDKAYLFYKELLQ----KAPNN-----------VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLA  123 (208)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence            489999999999999999999999    67877           679999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHH-----------------------------------cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          271 GLYRRGMAYMA-----------------------------------LGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       271 a~~r~g~a~~~-----------------------------------l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                      +++++|.+|..                                   +|+|++|+.+|++|++++|++  .+...|..+.
T Consensus       124 a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~--~~~~~l~~i~  200 (208)
T 3urz_A          124 ANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST--EAQKTLDKIL  200 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH--HHHHHHHHHH
Confidence            88888877643                                   356889999999999999974  3555555554

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.36  E-value=7.8e-12  Score=112.66  Aligned_cols=132  Identities=16%  Similarity=0.240  Sum_probs=110.8

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHc-----------CCHHHH
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL-----------GECRKS  254 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl-----------~~~~~A  254 (414)
                      +..+...|..+++.|++.+|+..|.+++.    +.|.+           ..++.|+|.++.++           |++++|
T Consensus        39 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~----~~P~~-----------~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A  103 (217)
T 2pl2_A           39 PEALYWLARTQLKLGLVNPALENGKTLVA----RTPRY-----------LGGYMVLSEAYVALYRQAEDRERGKGYLEQA  103 (217)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHhhhhhhhhcccccCHHHH
Confidence            45677889999999999999999999999    67877           67899999999999           999999


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 015006          255 IEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDK  334 (414)
Q Consensus       255 ~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  334 (414)
                      +..+.++++++|+++.+++.+|.++..+|++++|+..|++|++++ ++ ..+...+..+.....+..+. ...+.+....
T Consensus       104 ~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~-~~~~~~la~~~~~~g~~~~A-~~~~~~al~~  180 (217)
T 2pl2_A          104 LSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DT-PEIRSALAELYLSMGRLDEA-LAQYAKALEQ  180 (217)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC-HHHHHHHHHHHHHHTCHHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cc-hHHHHHHHHHHHHcCCHHHH-HHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999 66 67887888776555443332 4445555444


Q ss_pred             C
Q 015006          335 K  335 (414)
Q Consensus       335 ~  335 (414)
                      .
T Consensus       181 ~  181 (217)
T 2pl2_A          181 A  181 (217)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}

Probab=99.36  E-value=4.4e-12  Score=109.75  Aligned_cols=69  Identities=19%  Similarity=0.272  Sum_probs=61.3

Q ss_pred             CCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCCeEEEEecCCCccccCC
Q 015006           75 LHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFL  148 (414)
Q Consensus        75 ~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~~v~i~~~~~yg~~~  148 (414)
                      ..|+.|+|+|++++.+  |++| ++++  .++|+.|.+|.+.+++||+.+|.+|++||++.|.|||+.+||..+
T Consensus         4 ~~gd~V~v~Y~g~~~d--G~~f-dss~--~~~P~~f~lG~g~vipG~eeaL~Gm~~Ge~~~v~ippe~aYG~~~   72 (171)
T 2k8i_A            4 AKDLVVSLAYQVRTED--GVLV-DESP--VSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD   72 (171)
T ss_dssp             CTTEEEEEEEEEEETT--SCEE-EECC--SSSCEEEETTSCSSCSHHHHHHTTCCTTCEEEEEEETTTSSCCCC
T ss_pred             CCCCEEEEEEEEEECC--CCEE-eecc--CCcCEEEEECCCCcchHHHHHHcCCCCCCEEEEEECcHHhcCCCC
Confidence            4789999999999754  9998 5554  347999999999999999999999999999999999999999763

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.35  E-value=5.2e-12  Score=99.36  Aligned_cols=100  Identities=14%  Similarity=0.193  Sum_probs=92.7

Q ss_pred             HHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 015006          188 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  267 (414)
Q Consensus       188 ~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~  267 (414)
                      .+...|..++..|+|.+|+..|.+++.    ..|.+           ..++.++|.+++.+++|++|+..+.++++++|.
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~----~~~~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~   72 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQ----LDPEE-----------SKYWLMKGKALYNLERYEEAVDCYNYVINVIED   72 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHH----hCcCC-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence            456778889999999999999999999    45655           568899999999999999999999999999999


Q ss_pred             --cHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC
Q 015006          268 --HVKGLYRRGMAYMAL-GEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       268 --~~ka~~r~g~a~~~l-~~~~eA~~~~~~al~l~P~n  302 (414)
                        +..+++.+|.++..+ |++++|++.|++++...|.+
T Consensus        73 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           73 EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence              999999999999999 99999999999999999975

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.35  E-value=1.4e-11  Score=107.02  Aligned_cols=142  Identities=19%  Similarity=0.277  Sum_probs=99.3

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHH-----------------------HHhhhhhHHHHHHH
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGK-----------------------VFVGKRNLLHLNVA  242 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~-----------------------~~~~~~~~~~~N~a  242 (414)
                      +..+...|+.+++.|+|++|+..|+++++    ++|.+.+-..                       ........++.++|
T Consensus         5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   80 (184)
T 3vtx_A            5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLK----ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILG   80 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence            56778899999999999999999999999    6776632110                       01111234566677


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 015006          243 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVES  322 (414)
Q Consensus       243 ~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~  322 (414)
                      .++...+++..|+..+.+++.++|.++.+++.+|.++..+|++++|+..|+++++++|.+ ..+...+..+.....+..+
T Consensus        81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF-IRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchh-hhHHHHHHHHHHHCCCHHH
Confidence            777777777777777777777777778888888888888888888888888888888877 5677777776655543332


Q ss_pred             HHHHHHHhhcc
Q 015006          323 KARKQFKGLFD  333 (414)
Q Consensus       323 ~~~~~~~~~~~  333 (414)
                       ....+.+.++
T Consensus       160 -A~~~~~~al~  169 (184)
T 3vtx_A          160 -AVKYFKKALE  169 (184)
T ss_dssp             -HHHHHHHHHH
T ss_pred             -HHHHHHHHHh
Confidence             2334444443

>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A

Probab=99.34  E-value=1.7e-12  Score=110.62  Aligned_cols=70  Identities=29%  Similarity=0.421  Sum_probs=61.2

Q ss_pred             CCCCeEEEEEEEEeecCCCceEeeeccCC------------CCCceEEEcCCCCchHHHHHHhhhcCCCCeEEEEecCCC
Q 015006           75 LHDSLLCVHYKGMLLNEEKKVFYDTRVDN------------DGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDY  142 (414)
Q Consensus        75 ~~~~~v~v~y~g~~~~~~g~~~~~s~~~~------------~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~~v~i~~~~  142 (414)
                      ..|+.|+|||+|++ +  |++| |++...            .++|++|.+|.+.+++||+.+|.+|++||++.|.|||++
T Consensus         3 ~~Gd~V~v~Y~g~l-d--G~vf-Dss~~~~a~~~g~~~~~~~~~P~~f~vG~g~vi~G~eeaL~gm~~Ge~~~v~Ipp~~   78 (157)
T 3pr9_A            3 EKGKMVKISYDGYV-D--GKLF-DTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEK   78 (157)
T ss_dssp             CTTCEEEEEEEEEE-T--TEEE-EESCHHHHHHHTCCCTTSCCSCEEEETTSSSSCHHHHHHHHHCCTTCEEEEEECGGG
T ss_pred             CCCCEEEEEEEEEE-C--CEEE-EeccccccccccccccccCCCCEEEEECCCcHHHHHHHHHcCCCCCCEEEEEECcHH
Confidence            46899999999998 5  9998 555420            137999999999999999999999999999999999999


Q ss_pred             ccccCC
Q 015006          143 AYDKFL  148 (414)
Q Consensus       143 ~yg~~~  148 (414)
                      |||..+
T Consensus        79 aYG~~~   84 (157)
T 3pr9_A           79 AFGKRD   84 (157)
T ss_dssp             TTCCCC
T ss_pred             hcCCCC
Confidence            999765

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.32  E-value=2.3e-11  Score=109.59  Aligned_cols=114  Identities=15%  Similarity=0.162  Sum_probs=101.6

Q ss_pred             HHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 015006          188 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  267 (414)
Q Consensus       188 ~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~  267 (414)
                      .+...|..++..|+|.+|+..|.+++.    ..|.+           ..++.++|.+|..+|+|++|+..+.++++++|+
T Consensus        44 ~~~~~~~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~  108 (228)
T 4i17_A           44 TAYNCGVCADNIKKYKEAADYFDIAIK----KNYNL-----------ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG  108 (228)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCSH-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHH----hCcch-----------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence            445589999999999999999999998    66665           678999999999999999999999999999999


Q ss_pred             cH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHH
Q 015006          268 HV-------KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS--SEPDATAALSKLKKQR  317 (414)
Q Consensus       268 ~~-------ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~--n~~~~~~~l~~~~~~~  317 (414)
                      ++       .+++++|.++..+|++++|+..|++|++++|+  + ..+...+..+....
T Consensus       109 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~l~~~~~~~  166 (228)
T 4i17_A          109 NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWK-TDALYSLGVLFYNN  166 (228)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHH-HHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCccc-HHHHHHHHHHHHHH
Confidence            98       77999999999999999999999999999998  7 56776777665433

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.31  E-value=3.4e-11  Score=114.56  Aligned_cols=122  Identities=22%  Similarity=0.401  Sum_probs=106.9

Q ss_pred             HHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 015006          187 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  266 (414)
Q Consensus       187 ~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp  266 (414)
                      ......|..+++.|+|.+|+..|.+++.    ..|.+.       .....++.++|.++.++|++++|+..+.++++++|
T Consensus       235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  303 (359)
T 3ieg_A          235 NKLIESAEELIRDGRYTDATSKYESVMK----TEPSVA-------EYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP  303 (359)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCSSH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCch-------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence            3445668899999999999999999999    455552       23346788999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 015006          267 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEV  320 (414)
Q Consensus       267 ~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~  320 (414)
                      +++.+++++|.++..+|++++|+..|+++++++|++ ..+...+..+...+++.
T Consensus       304 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~~~~~~~  356 (359)
T 3ieg_A          304 DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEND-QQIREGLEKAQRLLKQS  356 (359)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC-HHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999998 67888888887766543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.30  E-value=2.5e-11  Score=104.98  Aligned_cols=112  Identities=11%  Similarity=0.199  Sum_probs=98.2

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHH-HHHcCCH--HHHHHHHHHHH
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC-LLKLGEC--RKSIEACNKVL  262 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~-~~kl~~~--~~A~~~~~~al  262 (414)
                      +..+...|..++..|+|.+|+..|.+++.    +.|.+           ..++.++|.+ ++..+++  ++|+..+.+++
T Consensus        44 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~la~~l~~~~~~~~~~~A~~~~~~al  108 (177)
T 2e2e_A           44 SEQWALLGEYYLWQNDYSNSLLAYRQALQ----LRGEN-----------AELYAALATVLYYQASQHMTAQTRAMIDKAL  108 (177)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHCSC-----------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCC-----------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            45677889999999999999999999999    45655           5688999999 8899999  99999999999


Q ss_pred             HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 015006          263 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  313 (414)
Q Consensus       263 ~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~  313 (414)
                      .++|.++.+++.+|.++..+|++++|+..|+++++++|++ ......+..+
T Consensus       109 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~i  158 (177)
T 2e2e_A          109 ALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR-INRTQLVESI  158 (177)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT-SCHHHHHHHH
T ss_pred             HhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC-ccHHHHHHHH
Confidence            9999999999999999999999999999999999999987 3344333333

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}

Probab=99.30  E-value=1.1e-11  Score=105.25  Aligned_cols=71  Identities=24%  Similarity=0.313  Sum_probs=62.5

Q ss_pred             CCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCCeEEEEecCCCccccCC
Q 015006           74 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFL  148 (414)
Q Consensus        74 p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~~v~i~~~~~yg~~~  148 (414)
                      +..|+.|++||+|++.. +|++| ++++  .++|+.|.+|.+.+++||+.+|.+|++|+++.|.|||+.+||..+
T Consensus         7 i~~gd~V~v~Y~g~~~~-dG~~f-dss~--~~~p~~f~~G~g~vipg~e~aL~gm~~Ge~~~v~ipp~~aYG~~~   77 (151)
T 2kr7_A            7 ESIKQAALIEYEVREQG-SSIVL-DSNI--SKEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYGVYE   77 (151)
T ss_dssp             TTSCCEEEEEEEEEESS-CSCEE-EEST--TTCCEEEETTCCCSCHHHHHHHTTCCBTCEEEEEECGGGTTCSSC
T ss_pred             CCCCCEEEEEEEEEECC-CCCEE-EeCC--CCcCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEecHHHcCCCC
Confidence            35799999999999762 38998 5554  357999999999999999999999999999999999999999865

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.30  E-value=2.1e-11  Score=100.36  Aligned_cols=100  Identities=15%  Similarity=0.197  Sum_probs=86.1

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                      +..+.|+|.++++.|+|++|+..++++|+++|.++.+|+++|.++..+|++++|+.+|++|++++|++ ..+...+..+.
T Consensus        13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~   91 (126)
T 4gco_A           13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF-IKGYIRKAACL   91 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh-hHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999998 67888888887


Q ss_pred             HHHHHHHHHHHHHHHhhccCCC
Q 015006          315 KQRQEVESKARKQFKGLFDKKP  336 (414)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~  336 (414)
                      ..+....+ ....+.+.+...+
T Consensus        92 ~~~~~~~~-A~~~~~~al~l~P  112 (126)
T 4gco_A           92 VAMREWSK-AQRAYEDALQVDP  112 (126)
T ss_dssp             HHTTCHHH-HHHHHHHHHHHCT
T ss_pred             HHCCCHHH-HHHHHHHHHHHCc
Confidence            66654443 3445555554443

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1

Probab=99.30  E-value=2.4e-12  Score=109.41  Aligned_cols=71  Identities=35%  Similarity=0.486  Sum_probs=61.6

Q ss_pred             CCCCeEEEEEEEEeecCCCceEeeeccC------------CCCCceEEEcCCCCchHHHHHHhhhcCCCCeEEEEecCCC
Q 015006           75 LHDSLLCVHYKGMLLNEEKKVFYDTRVD------------NDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDY  142 (414)
Q Consensus        75 ~~~~~v~v~y~g~~~~~~g~~~~~s~~~------------~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~~v~i~~~~  142 (414)
                      ..|+.|+|||+|++.+  |++| ++++.            ....|+.|.+|.|.+++||+.+|.+|++||++.|+|||+.
T Consensus         3 ~~gd~V~v~Y~g~~~d--G~~f-dss~~~~a~~~g~~~~~~~~~P~~f~~G~g~vi~G~eeaL~gm~~Ge~~~v~ipp~~   79 (151)
T 1ix5_A            3 DKGVKIKVDYIGKLES--GDVF-DTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEK   79 (151)
T ss_dssp             CTTCEEEECCEECCTT--SCCC-EESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTT
T ss_pred             CCCCEEEEEEEEEECC--CCEE-EecchhhcccccccccccCCCCEEEEECCCChhHHHHHHHcCCCCCCEEEEEECcHH
Confidence            5799999999999754  9998 55431            1246999999999999999999999999999999999999


Q ss_pred             ccccCC
Q 015006          143 AYDKFL  148 (414)
Q Consensus       143 ~yg~~~  148 (414)
                      |||..+
T Consensus        80 aYG~~~   85 (151)
T 1ix5_A           80 AYGNRN   85 (151)
T ss_dssp             SSCSCC
T ss_pred             HCCCCC
Confidence            999765

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.29  E-value=3.7e-11  Score=106.65  Aligned_cols=134  Identities=15%  Similarity=0.211  Sum_probs=110.1

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      .+..+...|+.++..|+|.+|+..|.+++.      + +           ..+++|+|.+++++|+|.+|+..+.+++.+
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~------~-~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   66 (213)
T 1hh8_A            5 EAISLWNEGVLAADKKDWKGALDAFSAVQD------P-H-----------SRICFNIGCMYTILKNMTEAEKAFTRSINR   66 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSSS------C-C-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHcC------C-C-----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            566778899999999999999999999853      1 2           568999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015006          265 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE---------------PDATAALSKLKKQRQEVESKARKQFK  329 (414)
Q Consensus       265 dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~---------------~~~~~~l~~~~~~~~~~~~~~~~~~~  329 (414)
                      +|.++.+++++|.++..+|++++|+..|++++++.|.+.               ..+...+..+.....+.. +....+.
T Consensus        67 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~  145 (213)
T 1hh8_A           67 DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWK-KAEEQLA  145 (213)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHH-HHHHHHH
T ss_pred             CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHH-HHHHHHH
Confidence            999999999999999999999999999999999998762               156666776665544333 3344555


Q ss_pred             hhccCCCC
Q 015006          330 GLFDKKPG  337 (414)
Q Consensus       330 ~~~~~~~~  337 (414)
                      +.....+.
T Consensus       146 ~al~~~p~  153 (213)
T 1hh8_A          146 LATSMKSE  153 (213)
T ss_dssp             HHHTTCCS
T ss_pred             HHHHcCcc
Confidence            55555443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.27  E-value=1.1e-10  Score=101.36  Aligned_cols=113  Identities=19%  Similarity=0.227  Sum_probs=88.5

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHH-----------------------HHHhhhhhHHHHHHH
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG-----------------------KVFVGKRNLLHLNVA  242 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~-----------------------~~~~~~~~~~~~N~a  242 (414)
                      +..+...|..+++.|++.+|+..|.+++.    ..|.+..-.                       ....+....++.++|
T Consensus        39 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg  114 (184)
T 3vtx_A           39 VETLLKLGKTYMDIGLPNDAIESLKKFVV----LDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLG  114 (184)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence            34455666677777777777777777766    233321110                       011122356889999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          243 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       243 ~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      .++.++|+|++|+..++++++++|.++.+++++|.+|..+|++++|+..|++|++++|++
T Consensus       115 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  174 (184)
T 3vtx_A          115 LVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK  174 (184)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred             HHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence            999999999999999999999999999999999999999999999999999999999975

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.27  E-value=1.5e-12  Score=103.13  Aligned_cols=95  Identities=29%  Similarity=0.427  Sum_probs=77.3

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      .+..+...|+.++..|+|.+|+..|.+++.    ..|.+           ..+++|+|.|++++|+|++|+.++.+++++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   67 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLIT----AQPQN-----------PVGYSNKAMALIKLGEYTQAIQMCQQGLRY   67 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCC-----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            356677888888888888888888888888    56655           567888888888888888888888888888


Q ss_pred             CCCc------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015006          265 NPAH------VKGLYRRGMAYMALGEFEEAQRDFEM  294 (414)
Q Consensus       265 dp~~------~ka~~r~g~a~~~l~~~~eA~~~~~~  294 (414)
                      +|++      ..+++++|.++..+|++++|+..|++
T Consensus        68 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           68 TSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             CSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence            8888      88888888888888888777766543

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.27  E-value=5.9e-12  Score=107.36  Aligned_cols=98  Identities=8%  Similarity=-0.005  Sum_probs=84.8

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                      ..+++++|.+++++|+|++|+..|.+++.++|.++.+|+.+|.++..+|+|++|+..|++|++++|++ ..+...+..+.
T Consensus        36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~-~~~~~~lg~~~  114 (151)
T 3gyz_A           36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND-YTPVFHTGQCQ  114 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC-cHHHHHHHHHH
Confidence            66899999999999999999999999999999999999999999999999999999999999999998 67888888887


Q ss_pred             HHHHHHHHHHHHHHHhhccC
Q 015006          315 KQRQEVESKARKQFKGLFDK  334 (414)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~  334 (414)
                      ..+.+..+. ...|.+....
T Consensus       115 ~~lg~~~eA-~~~~~~al~l  133 (151)
T 3gyz_A          115 LRLKAPLKA-KECFELVIQH  133 (151)
T ss_dssp             HHTTCHHHH-HHHHHHHHHH
T ss_pred             HHcCCHHHH-HHHHHHHHHh
Confidence            666544433 4445544443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.27  E-value=4.6e-11  Score=119.90  Aligned_cols=116  Identities=25%  Similarity=0.395  Sum_probs=103.6

Q ss_pred             hhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015006          182 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV  261 (414)
Q Consensus       182 ~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~a  261 (414)
                      +.+.+..+...|+.+++.|+|.+|+..|++++.    ..| +           ..++.++|.|++++|+|++|+..+.++
T Consensus         2 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p-~-----------~~~~~~la~~~~~~g~~~~A~~~~~~a   65 (514)
T 2gw1_A            2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALE----LKE-D-----------PVFYSNLSACYVSVGDLKKVVEMSTKA   65 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH----HCC-C-----------HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHhccHHHHHHHHHHHHh----cCc-c-----------HHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence            456799999999999999999999999999999    445 3           568999999999999999999999999


Q ss_pred             HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 015006          262 LDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  313 (414)
Q Consensus       262 l~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~  313 (414)
                      ++++|+++.+++.+|.++..+|++++|+..|++++.++|.+.......+..+
T Consensus        66 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  117 (514)
T 2gw1_A           66 LELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERN  117 (514)
T ss_dssp             HHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHH
T ss_pred             hccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHH
Confidence            9999999999999999999999999999999999999997654444444433

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.26  E-value=4.2e-11  Score=108.64  Aligned_cols=111  Identities=26%  Similarity=0.410  Sum_probs=85.9

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +..+...|..++..|+|.+|+..|.+++.    ..|.+           ..++.++|.++.++|+|++|+..+.++++++
T Consensus       139 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~----~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  203 (258)
T 3uq3_A          139 AEEARLEGKEYFTKSDWPNAVKAYTEMIK----RAPED-----------ARGYSNRAAALAKLMSFPEAIADCNKAIEKD  203 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHh----cCccc-----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence            44566778888888888888888888887    45554           4677888888888888888888888888888


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHH
Q 015006          266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD------KSSEPDATAALSK  312 (414)
Q Consensus       266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~------P~n~~~~~~~l~~  312 (414)
                      |+++.+++.+|.++..+|++++|+..|+++++++      |++ ..+...+..
T Consensus       204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~-~~~~~~l~~  255 (258)
T 3uq3_A          204 PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA-REIDQLYYK  255 (258)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCch-HHHHHHHHH
Confidence            8888888888888888888888888888888887      765 455555543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.25  E-value=4.3e-11  Score=106.27  Aligned_cols=102  Identities=9%  Similarity=0.094  Sum_probs=94.6

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +..+...|..++..|+|.+|+..|.+++.    ..|.+           ..+++|+|.+++.+|+|++|+.++.+++++.
T Consensus        37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~~~~-----------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  101 (213)
T 1hh8_A           37 SRICFNIGCMYTILKNMTEAEKAFTRSIN----RDKHL-----------AVAYFQRGMLYYQTEKYDLAIKDLKEALIQL  101 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCccc-----------hHHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Confidence            45778899999999999999999999999    45655           6789999999999999999999999999988


Q ss_pred             CCcH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          266 PAHV----------------KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       266 p~~~----------------ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      |.+.                .+++++|.++..+|++++|+..|+++++++|++
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A          102 RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence            8776                999999999999999999999999999999976

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.25  E-value=1.6e-10  Score=106.00  Aligned_cols=104  Identities=21%  Similarity=0.234  Sum_probs=97.6

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      .+..+...|..++..|+|.+|+..|.+++.    ..|.+           ..++.++|.++..+|+|++|+..+.+++++
T Consensus        42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~----~~~~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~  106 (275)
T 1xnf_A           42 RAQLLYERGVLYDSLGLRALARNDFSQALA----IRPDM-----------PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL  106 (275)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHH----cCCCc-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            467788899999999999999999999999    56665           668999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 015006          265 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  303 (414)
Q Consensus       265 dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~  303 (414)
                      +|.++.+++.+|.++..+|++++|+..|+++++++|++.
T Consensus       107 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  145 (275)
T 1xnf_A          107 DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP  145 (275)
T ss_dssp             CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence            999999999999999999999999999999999999983

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}

Probab=99.24  E-value=2.6e-11  Score=107.05  Aligned_cols=69  Identities=19%  Similarity=0.272  Sum_probs=61.5

Q ss_pred             CCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCCeEEEEecCCCccccCC
Q 015006           75 LHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFL  148 (414)
Q Consensus        75 ~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~~v~i~~~~~yg~~~  148 (414)
                      ..|+.|+|+|++++.+  |++| ++++  ..+|++|.+|.+.+++||+.+|.+|++|+++.|+|||+.+||...
T Consensus         4 ~~gd~V~v~Y~g~~~d--G~~f-dss~--~~~P~~f~lG~g~vipG~eeaL~Gm~vGe~~~v~Ippe~aYGe~~   72 (196)
T 2kfw_A            4 AKDLVVSLAYQVRTED--GVLV-DESP--VSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD   72 (196)
T ss_dssp             CSSCEEEEEEEEEETT--TEEE-EECC--TTSCCEEESSSSSSCHHHHHHHSSSCTTCEEEEECSTTTTSSCCC
T ss_pred             CCCCEEEEEEEEEECC--CCEE-EecC--CCCCEEEEECCCCcchHHHHHHcCCCCCCEEEEEeCcHHhcCCCC
Confidence            4789999999999744  8988 5554  347999999999999999999999999999999999999999765

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.22  E-value=3.1e-10  Score=90.88  Aligned_cols=83  Identities=14%  Similarity=0.195  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 015006          204 LAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG  283 (414)
Q Consensus       204 ~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~  283 (414)
                      .|+..|.+++.    ..|.+           ..+++++|.+++.+|+|++|+..+.+++.++|.++.+++.+|.++..+|
T Consensus         3 ~a~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g   67 (115)
T 2kat_A            3 AITERLEAMLA----QGTDN-----------MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQG   67 (115)
T ss_dssp             CHHHHHHHHHT----TTCCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcC
Confidence            57889999999    67777           6789999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCC
Q 015006          284 EFEEAQRDFEMMMKVDKS  301 (414)
Q Consensus       284 ~~~eA~~~~~~al~l~P~  301 (414)
                      ++++|+..|+++++++|.
T Consensus        68 ~~~~A~~~~~~al~~~~~   85 (115)
T 2kat_A           68 DRAGARQAWESGLAAAQS   85 (115)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhccc
Confidence            999999999999999884

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.22  E-value=5.5e-11  Score=102.78  Aligned_cols=134  Identities=12%  Similarity=0.113  Sum_probs=107.0

Q ss_pred             HHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 015006          188 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  267 (414)
Q Consensus       188 ~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~  267 (414)
                      ++...++.++..|+|.+|+..|.+++.    ..|.+           ..++.++|.+++.+|+|++|+..+.+++.++|.
T Consensus        12 ~~~~~~~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~   76 (177)
T 2e2e_A           12 RQRDPLHQFASQQNPEAQLQALQDKIR----ANPQN-----------SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE   76 (177)
T ss_dssp             CSSTTTCCCC-----CCCCHHHHHHHH----HCCSC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS
T ss_pred             HHhhhhhhhhhccCHHHHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            344667888999999999999999999    56666           568999999999999999999999999999999


Q ss_pred             cHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 015006          268 HVKGLYRRGMA-YMALGEF--EEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPGE  338 (414)
Q Consensus       268 ~~ka~~r~g~a-~~~l~~~--~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (414)
                      ++.+++.+|.+ +...|++  ++|+..|+++++++|++ ..+...+..+........ .....+.+.+...+..
T Consensus        77 ~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~p~~  148 (177)
T 2e2e_A           77 NAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNE-ITALMLLASDAFMQANYA-QAIELWQKVMDLNSPR  148 (177)
T ss_dssp             CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHH-HHHHHHHHHHHTCCTT
T ss_pred             CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcccHH-HHHHHHHHHHhhCCCC
Confidence            99999999999 8899999  99999999999999998 667777777765554333 3344566666554443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.21  E-value=1.2e-10  Score=117.62  Aligned_cols=119  Identities=10%  Similarity=0.055  Sum_probs=106.4

Q ss_pred             HHHHhhhcccccc---------ccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHc--------C
Q 015006          187 EKIRVTGNRLFKE---------GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL--------G  249 (414)
Q Consensus       187 ~~~k~~Gn~~fk~---------g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl--------~  249 (414)
                      ..+...|..++..         |+|.+|+..|.+|+.    +.|.+           ..+++|+|.+|..+        +
T Consensus       171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~~~~~~~~~g  235 (474)
T 4abn_A          171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ----MDVLD-----------GRSWYILGNAYLSLYFNTGQNPK  235 (474)
T ss_dssp             HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHHHHTTCCHH
T ss_pred             HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHHHHhhccccc
Confidence            4566788888888         999999999999999    67776           67899999999999        9


Q ss_pred             CHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 015006          250 ECRKSIEACNKVLDANP---AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVE  321 (414)
Q Consensus       250 ~~~~A~~~~~~al~~dp---~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~  321 (414)
                      +|++|+..+.++++++|   .++.+++++|.+|..+|++++|+..|++|++++|++ ..+...+..+...+.+..
T Consensus       236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-~~a~~~l~~~~~~lg~~~  309 (474)
T 4abn_A          236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW-PEPQQREQQLLEFLSRLT  309 (474)
T ss_dssp             HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHH
Confidence            99999999999999999   999999999999999999999999999999999998 677777777766555433

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.20  E-value=2e-10  Score=118.28  Aligned_cols=116  Identities=14%  Similarity=0.090  Sum_probs=106.5

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +..+...|..++..|+|.+|+..|++++.    ..|.+           ..++.++|.+|..+|+|++|+..+.++++++
T Consensus        23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   87 (568)
T 2vsy_A           23 FVAWLMLADAELGMGDTTAGEMAVQRGLA----LHPGH-----------PEAVARLGRVRWTQQRHAEAAVLLQQASDAA   87 (568)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHT----TSTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            55677889999999999999999999999    67776           6789999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 015006          266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  317 (414)
Q Consensus       266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~  317 (414)
                      |+++.+++++|.++..+|++++|+..|+++++++|++ ..+...+..+....
T Consensus        88 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~  138 (568)
T 2vsy_A           88 PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE-PYITAQLLNWRRRL  138 (568)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999998 67777777776655

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.19  E-value=2e-10  Score=105.73  Aligned_cols=105  Identities=11%  Similarity=0.202  Sum_probs=94.6

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +..+...|..+++.|+|.+|+..|.+++.    ..|.++        ....+++++|.||+++|+|.+|+..+.+++.+.
T Consensus        15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~----~~p~~~--------~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~   82 (261)
T 3qky_A           15 PQEAFERAMEFYNQGKYDRAIEYFKAVFT----YGRTHE--------WAADAQFYLARAYYQNKEYLLAASEYERFIQIY   82 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHGG----GCSCST--------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHH----hCCCCc--------chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC
Confidence            66778899999999999999999999999    555542        235689999999999999999999999999998


Q ss_pred             CCc---HHHHHHHHHHHHH--------cCCHHHHHHHHHHHHhhCCCC
Q 015006          266 PAH---VKGLYRRGMAYMA--------LGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       266 p~~---~ka~~r~g~a~~~--------l~~~~eA~~~~~~al~l~P~n  302 (414)
                      |++   +.++|++|.++..        +|++++|+..|+++++++|++
T Consensus        83 p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~  130 (261)
T 3qky_A           83 QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNH  130 (261)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTC
T ss_pred             CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCc
Confidence            854   7899999999999        999999999999999999987

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.18  E-value=6e-11  Score=100.38  Aligned_cols=110  Identities=9%  Similarity=0.046  Sum_probs=89.4

Q ss_pred             HHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 015006          207 AKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFE  286 (414)
Q Consensus       207 ~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~  286 (414)
                      ..|++++.    +.|.+           ..+++++|.+++..|+|.+|+..+.+++.++|.++.+++.+|.++..+|+++
T Consensus         8 ~~~~~al~----~~p~~-----------~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~   72 (148)
T 2vgx_A            8 GTIAMLNE----ISSDT-----------LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYD   72 (148)
T ss_dssp             CSHHHHTT----CCHHH-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             hhHHHHHc----CCHhh-----------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHH
Confidence            34667776    45443           6688999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015006          287 EAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFD  333 (414)
Q Consensus       287 eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  333 (414)
                      +|+..|++|+.++|++ ..+...+..+...+.+..+. ...+.+...
T Consensus        73 ~A~~~~~~al~l~p~~-~~~~~~lg~~~~~~g~~~~A-~~~~~~al~  117 (148)
T 2vgx_A           73 LAIHSYSYGAVMDIXE-PRFPFHAAECLLQXGELAEA-ESGLFLAQE  117 (148)
T ss_dssp             HHHHHHHHHHHHSTTC-THHHHHHHHHHHHTTCHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCC-chHHHHHHHHHHHcCCHHHH-HHHHHHHHH
Confidence            9999999999999998 57777777776555443332 334444443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.18  E-value=2e-10  Score=103.81  Aligned_cols=106  Identities=20%  Similarity=0.297  Sum_probs=92.8

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +..+...|..+++.|+|.+|+..|.+++.    ..|.++        ....+++++|.|++++|+|++|+..+.++++.+
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~----~~p~~~--------~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~   71 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDN----RYPFGP--------YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN   71 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTTST--------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCh--------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence            45567788999999999999999999998    455442        124589999999999999999999999999999


Q ss_pred             CCcHH---HHHHHHHHHHH------------------cCCHHHHHHHHHHHHhhCCCCH
Q 015006          266 PAHVK---GLYRRGMAYMA------------------LGEFEEAQRDFEMMMKVDKSSE  303 (414)
Q Consensus       266 p~~~k---a~~r~g~a~~~------------------l~~~~eA~~~~~~al~l~P~n~  303 (414)
                      |++..   |+|++|.++..                  +|++++|+..|+++++..|++.
T Consensus        72 P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~  130 (225)
T 2yhc_A           72 PTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQ  130 (225)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCT
T ss_pred             cCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCCh
Confidence            99875   89999999987                  5789999999999999999974

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.18  E-value=3.5e-10  Score=111.78  Aligned_cols=119  Identities=23%  Similarity=0.407  Sum_probs=104.4

Q ss_pred             HHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 015006          188 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  267 (414)
Q Consensus       188 ~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~  267 (414)
                      .+...|..++..|+|.+|+..|.+++.    ..|.+.       .....++.++|.++.++|++++|+..+.+++.++|+
T Consensus       259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~----~~p~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~  327 (450)
T 2y4t_A          259 KLIESAEELIRDGRYTDATSKYESVMK----TEPSIA-------EYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD  327 (450)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHH----HCCSSH-------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCcch-------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            345569999999999999999999999    556552       223568999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 015006          268 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  318 (414)
Q Consensus       268 ~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~  318 (414)
                      ++.+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+.....
T Consensus       328 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~  377 (450)
T 2y4t_A          328 NVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEND-QQIREGLEKAQRLLK  377 (450)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC-HHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcch-HHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999998 678878877765544

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.18  E-value=4.6e-10  Score=103.32  Aligned_cols=141  Identities=20%  Similarity=0.266  Sum_probs=112.2

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHH--------cCCHHHHHHH
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK--------LGECRKSIEA  257 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~k--------l~~~~~A~~~  257 (414)
                      +..+...|..+++.|+|.+|+..|.+++.    ..|.++        ....+++++|.|+++        +|++.+|+..
T Consensus        52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~----~~p~~~--------~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~  119 (261)
T 3qky_A           52 ADAQFYLARAYYQNKEYLLAASEYERFIQ----IYQIDP--------RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEA  119 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCT--------THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHH----HCCCCc--------hhHHHHHHHHHHHHHhcccccccchhHHHHHHH
Confidence            56677889999999999999999999999    455442        124689999999999        9999999999


Q ss_pred             HHHHHHhCCCcHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHHH-
Q 015006          258 CNKVLDANPAHVKGL-----------------YRRGMAYMALGEFEEAQRDFEMMMKVDKSSE--PDATAALSKLKKQR-  317 (414)
Q Consensus       258 ~~~al~~dp~~~ka~-----------------~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~--~~~~~~l~~~~~~~-  317 (414)
                      +.++++..|++..+.                 +.+|.+|..+|+|++|+..|+++++..|++.  ..+...+..+...+ 
T Consensus       120 ~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g  199 (261)
T 3qky_A          120 FQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYA  199 (261)
T ss_dssp             HHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhc
Confidence            999999999986666                 9999999999999999999999999999852  34555565555443 


Q ss_pred             --------HHHHHHHHHHHHhhccCCCCC
Q 015006          318 --------QEVESKARKQFKGLFDKKPGE  338 (414)
Q Consensus       318 --------~~~~~~~~~~~~~~~~~~~~~  338 (414)
                              ...-.+....+++.....+..
T Consensus       200 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  228 (261)
T 3qky_A          200 EQSVRARQPERYRRAVELYERLLQIFPDS  228 (261)
T ss_dssp             HTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             ccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence                    123344456666666665544

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.17  E-value=2.6e-10  Score=115.24  Aligned_cols=115  Identities=13%  Similarity=0.117  Sum_probs=105.2

Q ss_pred             HHHHHhhhccccccccH-HHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          186 AEKIRVTGNRLFKEGKF-ELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y-~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      +..+...|..++..|+| .+|+..|.+|+.    +.|.+           ..+++++|.||+++|+|++|+..+.+++++
T Consensus       102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~----~~p~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~  166 (474)
T 4abn_A          102 AQALMLKGKALNVTPDYSPEAEVLLSKAVK----LEPEL-----------VEAWNQLGEVYWKKGDVTSAHTCFSGALTH  166 (474)
T ss_dssp             HHHHHHHHHHHTSSSSCCHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHh----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            66788899999999999 999999999999    67766           679999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 015006          265 NPAHVKGLYRRGMAYMAL---------GEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  317 (414)
Q Consensus       265 dp~~~ka~~r~g~a~~~l---------~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~  317 (414)
                      +|+ ..+++++|.++..+         |++++|+..|++|++++|++ ..+...+..+....
T Consensus       167 ~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~  226 (474)
T 4abn_A          167 CKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD-GRSWYILGNAYLSL  226 (474)
T ss_dssp             CCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHH
T ss_pred             CCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHH
Confidence            998 79999999999999         99999999999999999998 67777777776544

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.17  E-value=5.6e-10  Score=95.50  Aligned_cols=117  Identities=19%  Similarity=0.248  Sum_probs=98.6

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +..+...|..++..|++.+|+..|.+++.    ..|.+           ..++.++|.++...+++++|+..+.+++..+
T Consensus        42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~  106 (186)
T 3as5_A           42 VDVALHLGIAYVKTGAVDRGTELLERSLA----DAPDN-----------VKVATVLGLTYVQVQKYDLAVPLLIKVAEAN  106 (186)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCC-----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            44566778888888999999999999988    45544           5688899999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 015006          266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  318 (414)
Q Consensus       266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~  318 (414)
                      |.++.+++.+|.++..+|++++|+..|++++++.|.+ ..+...+..+.....
T Consensus       107 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~  158 (186)
T 3as5_A          107 PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE-GKVHRAIAFSYEQMG  158 (186)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTT
T ss_pred             cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc-hHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999987 566666666655443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.17  E-value=3.8e-10  Score=91.02  Aligned_cols=113  Identities=25%  Similarity=0.431  Sum_probs=98.1

Q ss_pred             HHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 015006          188 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  267 (414)
Q Consensus       188 ~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~  267 (414)
                      .+...|..++..|++.+|+..|.+++.    ..|.+           ..++.++|.++...+++++|+..+.+++...|.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~   67 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALE----LDPRS-----------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR   67 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHH----cCCcc-----------hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence            355678888899999999999999998    45544           567889999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 015006          268 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  316 (414)
Q Consensus       268 ~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~  316 (414)
                      ++.+++.+|.++...|++++|+..|++++++.|.+ ..+...+..+...
T Consensus        68 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~  115 (136)
T 2fo7_A           68 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-AEAWYNLGNAYYK  115 (136)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHH
Confidence            99999999999999999999999999999999987 5565556555433

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.16  E-value=4.9e-10  Score=101.51  Aligned_cols=128  Identities=16%  Similarity=0.162  Sum_probs=105.9

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHH---------------HHHHhhhhhHHHHHHHHHHHHcCC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEE---------------GKVFVGKRNLLHLNVAACLLKLGE  250 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e---------------~~~~~~~~~~~~~N~a~~~~kl~~  250 (414)
                      +..+...|..++..|+|.+|+..|.+++..    .|.....               ..........++.++|.+++.+|+
T Consensus        79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (258)
T 3uq3_A           79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTE----HRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD  154 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhc----CchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence            677888999999999999999999999983    3321100               000122345689999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 015006          251 CRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  318 (414)
Q Consensus       251 ~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~  318 (414)
                      |++|+..+.+++.++|.++.+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+.....
T Consensus       155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~g  221 (258)
T 3uq3_A          155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF-VRAYIRKATAQIAVK  221 (258)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHH-HHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999998 667777776655444

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.16  E-value=8e-11  Score=119.07  Aligned_cols=112  Identities=29%  Similarity=0.487  Sum_probs=99.9

Q ss_pred             CCCchhhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHH
Q 015006          175 TGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKS  254 (414)
Q Consensus       175 ~~~~~~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A  254 (414)
                      ..++..++...+..+...|+.+++.|+|.+|+..|++++.    ..|.+           ..+++++|.|++++|+|++|
T Consensus        14 ~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~la~~~~~~g~~~~A   78 (537)
T 3fp2_A           14 KGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIE----LDPNE-----------PVFYSNISACYISTGDLEKV   78 (537)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHH
T ss_pred             cCCCcchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh----hCCCC-----------cHHHHHHHHHHHHcCCHHHH
Confidence            4567788888999999999999999999999999999999    57766           67999999999999999999


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          255 IEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       255 ~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      +..|.+++.++|+++.+++++|.++..+|++++|+..|+ ++.++|+.
T Consensus        79 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~  125 (537)
T 3fp2_A           79 IEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDF  125 (537)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-----
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCC
Confidence            999999999999999999999999999999999999995 99998875

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.15  E-value=4.4e-11  Score=126.35  Aligned_cols=133  Identities=14%  Similarity=0.109  Sum_probs=98.4

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +..+...|..++..|+|.+|+..|.+++.    ..|.+           ..+++|+|.+++.+|+|++|+.++++|++++
T Consensus       433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~  497 (681)
T 2pzi_A          433 VELPLMEVRALLDLGDVAKATRKLDDLAE----RVGWR-----------WRLVWYRAVAELLTGDYDSATKHFTEVLDTF  497 (681)
T ss_dssp             SHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HHCCC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHhc----cCcch-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            66788889999999999999999999998    56666           5677788888888888888888888888888


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 015006          266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKP  336 (414)
Q Consensus       266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (414)
                      |+++.+++++|.++..+|++++ +..|++|++++|++ ..+...+..+...+.+..+ ....+.+.....+
T Consensus       498 P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~-~~a~~~lg~~~~~~g~~~~-A~~~~~~al~l~P  565 (681)
T 2pzi_A          498 PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGV-ISAAFGLARARSAEGDRVG-AVRTLDEVPPTSR  565 (681)
T ss_dssp             TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHH-HHHHHHTSCTTST
T ss_pred             CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCch-HHHHHHHHHHHHHcCCHHH-HHHHHHhhcccCc
Confidence            8888888888888888888887 88888888888876 5566666666554443332 2334444444333

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.14  E-value=8.5e-11  Score=124.21  Aligned_cols=111  Identities=15%  Similarity=0.132  Sum_probs=100.8

Q ss_pred             HHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 015006          187 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  266 (414)
Q Consensus       187 ~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp  266 (414)
                      ..+...|..++..|+|++|+..|++|+.    +.|.+           ..+++|+|.|+.++|+|++ +.+|++|++++|
T Consensus       468 ~a~~~lg~~~~~~g~~~~A~~~~~~al~----l~P~~-----------~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P  531 (681)
T 2pzi_A          468 RLVWYRAVAELLTGDYDSATKHFTEVLD----TFPGE-----------LAPKLALAATAELAGNTDE-HKFYQTVWSTND  531 (681)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHH----HSTTC-----------SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC
Confidence            3567889999999999999999999999    67777           6789999999999999999 999999999999


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          267 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       267 ~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                      +++.+++++|.++..+|++++|+..|++|++++|++ ..+...+..+.
T Consensus       532 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-~~a~~~~~~~~  578 (681)
T 2pzi_A          532 GVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHF-TTARLTSAVTL  578 (681)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTH-HHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCccc-HHHHHHHHHHH
Confidence            999999999999999999999999999999999997 66776666654

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.14  E-value=5.4e-10  Score=106.10  Aligned_cols=110  Identities=20%  Similarity=0.375  Sum_probs=100.3

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +..+...|+.++..|+|.+|+..|.+++.    ..|.+           ..++.++|.|++.+|+|++|+..+.+++.++
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~----~~p~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~   67 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVD----GDPDN-----------YIAYYRRATVFLAMGKSKAALPDLTKVIALK   67 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCccc-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            56788899999999999999999999999    56666           5689999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHH
Q 015006          266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK---SSEPDATAALS  311 (414)
Q Consensus       266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P---~n~~~~~~~l~  311 (414)
                      |.++.+++.+|.++..+|++++|+..|+++++++|   ++ ..+...+.
T Consensus        68 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~  115 (359)
T 3ieg_A           68 MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEE-KEAESQLV  115 (359)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHH-HHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccCh-HHHHHHHH
Confidence            99999999999999999999999999999999999   65 45555553

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.14  E-value=6.3e-10  Score=95.17  Aligned_cols=117  Identities=17%  Similarity=0.191  Sum_probs=104.0

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      .+..+...|..++..|++.+|+..|.+++.    ..|.+           ..++.++|.++...+++++|+..+.+++.+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~   71 (186)
T 3as5_A            7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYD----ADAFD-----------VDVALHLGIAYVKTGAVDRGTELLERSLAD   71 (186)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHTTTCC----TTSCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcCHHHHHHHHHHHHH----hCccC-----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            466788899999999999999999999988    55655           568999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 015006          265 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  317 (414)
Q Consensus       265 dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~  317 (414)
                      +|.++.+++.+|.++...|++++|+..|+++++++|.+ ..+...+..+....
T Consensus        72 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~~~~  123 (186)
T 3as5_A           72 APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN-FNVRFRLGVALDNL  123 (186)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh-HHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999997 56666666655443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.14  E-value=5.2e-10  Score=107.73  Aligned_cols=113  Identities=17%  Similarity=0.125  Sum_probs=96.2

Q ss_pred             hhhccccccccHHHHHHHHHHHHhhcccCCCC--ChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 015006          191 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQ--DDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  268 (414)
Q Consensus       191 ~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~--~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~  268 (414)
                      ..|..+...|++.+|+..|.+++.    ..|.  +           ..+++++|.++..+|+|++|+..+.++++++|.+
T Consensus       182 ~l~~~~~~~g~~~~A~~~~~~al~----~~p~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  246 (365)
T 4eqf_A          182 RMSKSPVDSSVLEGVKELYLEAAH----QNGDMID-----------PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED  246 (365)
T ss_dssp             -------CCHHHHHHHHHHHHHHH----HSCSSCC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHH----hCcCccC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            348889999999999999999999    4555  3           5689999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 015006          269 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQE  319 (414)
Q Consensus       269 ~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~  319 (414)
                      +.+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+......
T Consensus       247 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~  296 (365)
T 4eqf_A          247 YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGF-IRSRYNLGISCINLGA  296 (365)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHCCC
Confidence            9999999999999999999999999999999998 6777777777655543

>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*

Probab=99.13  E-value=1.9e-10  Score=98.17  Aligned_cols=77  Identities=19%  Similarity=0.236  Sum_probs=63.8

Q ss_pred             CCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCCeEEEEecCCCccccCCCCCCCC
Q 015006           75 LHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVP  154 (414)
Q Consensus        75 ~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~~ip  154 (414)
                      ..|+.|+|+|+|+ .+  |++| +++.      +.|.+|.+.+++||+.+|.+|++||++.|.|||+.+||..+      
T Consensus         4 ~~gd~V~v~Y~g~-~d--G~~f-dss~------~~f~~G~g~vipG~e~aL~Gm~~Ge~~~v~ipp~~aYG~~~------   67 (158)
T 3cgm_A            4 GQDKVVTIRYTLQ-VE--GEVL-DQGE------LSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGPHD------   67 (158)
T ss_dssp             CTTEEEEEEEEEE-ET--TEEE-EEEE------EEEETTSSSSCHHHHHHHTTCBTTCEEEEEECGGGTTCCCC------
T ss_pred             CCCCEEEEEEEEE-EC--CEEE-EeeE------EEEEECCCCcChHHHHHHcCCCCCCEEEEEECcHHHcCCCC------
Confidence            4789999999999 54  9988 4542      89999999999999999999999999999999999999864      


Q ss_pred             CCcceEEEEEEcccC
Q 015006          155 EGAHIQWEIELLGFE  169 (414)
Q Consensus       155 ~~~~l~~eieL~~~~  169 (414)
                        ..+++.+.+..|.
T Consensus        68 --~~lv~~v~~~~f~   80 (158)
T 3cgm_A           68 --PEGVQVVPLSAFP   80 (158)
T ss_dssp             --GGGEEEEEGGGSC
T ss_pred             --cceEEEEEHHHCC
Confidence              2355555555553

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.12  E-value=4.2e-10  Score=101.25  Aligned_cols=117  Identities=15%  Similarity=0.107  Sum_probs=93.8

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +..+...|..++..|++.+|+..|.+++.    ..|.+           ..++.++|.++..+|++++|+..+.++++++
T Consensus        57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  121 (243)
T 2q7f_A           57 AIPYINFANLLSSVNELERALAFYDKALE----LDSSA-----------ATAYYGAGNVYVVKEMYKEAKDMFEKALRAG  121 (243)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCcc-----------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            56677778888888888888888888887    34444           5678888888888888888888888888888


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 015006          266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  318 (414)
Q Consensus       266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~  318 (414)
                      |.+..+++.+|.++..+|++++|+..|++++++.|++ ..+...+..+.....
T Consensus       122 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~  173 (243)
T 2q7f_A          122 MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND-TEARFQFGMCLANEG  173 (243)
T ss_dssp             CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc-HHHHHHHHHHHHHcC
Confidence            8888888888888888888888888888888888887 556666665554443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.12  E-value=5.9e-10  Score=102.34  Aligned_cols=141  Identities=16%  Similarity=0.165  Sum_probs=90.8

Q ss_pred             HHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHH----------------H-HHH---------hhhhhHHHHHHH
Q 015006          189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEE----------------G-KVF---------VGKRNLLHLNVA  242 (414)
Q Consensus       189 ~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e----------------~-~~~---------~~~~~~~~~N~a  242 (414)
                      +...|..++..|+|.+|+..|.+++.    ..|.+..-                . ..+         ......++.++|
T Consensus         6 ~~~~a~~~~~~~~~~~A~~~~~~~l~----~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg   81 (272)
T 3u4t_A            6 EFRYADFLFKNNNYAEAIEVFNKLEA----KKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG   81 (272)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHH----TTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence            34556666666777777777777766    33333110                0 000         012234578888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH-HHHHHHHHHH
Q 015006          243 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS-KLKKQRQEVE  321 (414)
Q Consensus       243 ~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~-~~~~~~~~~~  321 (414)
                      .++..+|++++|+..+.++++++|.++.+++.+|.++..+|++++|+..|+++++++|.+ ..+...+. .+....  .-
T Consensus        82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~~--~~  158 (272)
T 3u4t_A           82 KILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD-PKVFYELGQAYYYNK--EY  158 (272)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCC-HHHHHHHHHHHHHTT--CH
T ss_pred             HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCc-HHHHHHHHHHHHHHH--HH
Confidence            888888888888888888888888888888888888888888888888888888888877 55665555 433322  23


Q ss_pred             HHHHHHHHhhccCCC
Q 015006          322 SKARKQFKGLFDKKP  336 (414)
Q Consensus       322 ~~~~~~~~~~~~~~~  336 (414)
                      .+....+.+.....+
T Consensus       159 ~~A~~~~~~a~~~~p  173 (272)
T 3u4t_A          159 VKADSSFVKVLELKP  173 (272)
T ss_dssp             HHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHhCc
Confidence            333445555554433

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.12  E-value=4e-10  Score=92.56  Aligned_cols=68  Identities=13%  Similarity=0.251  Sum_probs=65.5

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      +.++.|+|.++++.|+|++|+.++++||+++|+++.+|+++|.+|..+|+|++|+.+|++|++++|++
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~   75 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET   75 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc
Confidence            56788999999999999999999999999999999999999999999999999999999999998865

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.11  E-value=1.5e-09  Score=97.53  Aligned_cols=131  Identities=21%  Similarity=0.262  Sum_probs=102.6

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +..+...|..++..|++.+|+..|.+++.    ..|.+           ..++.++|.+++++|++++|+..+.+++.++
T Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~  155 (243)
T 2q7f_A           91 ATAYYGAGNVYVVKEMYKEAKDMFEKALR----AGMEN-----------GDLFYMLGTVLVKLEQPKLALPYLQRAVELN  155 (243)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HTCCS-----------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            44566778888899999999999999998    45554           4578889999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015006          266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFD  333 (414)
Q Consensus       266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  333 (414)
                      |.++.+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+........ .....+++.+.
T Consensus       156 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~-~A~~~~~~~~~  221 (243)
T 2q7f_A          156 ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGH-ADAFYNAGVTYAYKENRE-KALEMLDKAID  221 (243)
T ss_dssp             TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCTT-HHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHccCHH-HHHHHHHHHHc
Confidence            9999999999999999999999999999999999987 566666666654443222 22334444443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.10  E-value=3.6e-10  Score=108.84  Aligned_cols=102  Identities=23%  Similarity=0.409  Sum_probs=94.6

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +..+...|..++..|+|.+|+..|.+++.    ..|.+           ..+++++|.++.++|++++|+..+.++++++
T Consensus       213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  277 (365)
T 4eqf_A          213 PDLQTGLGVLFHLSGEFNRAIDAFNAALT----VRPED-----------YSLWNRLGATLANGDRSEEAVEAYTRALEIQ  277 (365)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            44567789999999999999999999999    56665           6689999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      |+++.+++.+|.++..+|++++|+..|+++++++|++
T Consensus       278 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  314 (365)
T 4eqf_A          278 PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKS  314 (365)
T ss_dssp             TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC
T ss_pred             CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            9999999999999999999999999999999999874

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.09  E-value=1.4e-09  Score=88.40  Aligned_cols=85  Identities=15%  Similarity=0.134  Sum_probs=77.1

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                      ...+.++|.++++.|+|.+|+..+.++++++|.++.+++++|.++..+|++++|+..|+++++++|++ ..+...+..+.
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~   82 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF-VRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999998 67777777776


Q ss_pred             HHHHHH
Q 015006          315 KQRQEV  320 (414)
Q Consensus       315 ~~~~~~  320 (414)
                      ..+...
T Consensus        83 ~~~~~~   88 (126)
T 3upv_A           83 IAVKEY   88 (126)
T ss_dssp             HHTTCH
T ss_pred             HHHhCH
Confidence            555433

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.09  E-value=1.8e-09  Score=106.64  Aligned_cols=103  Identities=20%  Similarity=0.393  Sum_probs=97.4

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      .+..+...|..+++.|+|.+|+..|.+++.    ..|.+           ..+++++|.|++.+|++++|+..+.+++++
T Consensus        25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~----~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   89 (450)
T 2y4t_A           25 DVEKHLELGKKLLAAGQLADALSQFHAAVD----GDPDN-----------YIAYYRRATVFLAMGKSKAALPDLTKVIQL   89 (450)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCcc-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            477888999999999999999999999998    56665           679999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          265 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       265 dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      +|.++.+++.+|.++..+|++++|+..|+++++++|++
T Consensus        90 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  127 (450)
T 2y4t_A           90 KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE  127 (450)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCH
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence            99999999999999999999999999999999999986

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.09  E-value=9.5e-10  Score=88.60  Aligned_cols=101  Identities=27%  Similarity=0.492  Sum_probs=91.1

Q ss_pred             HHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 015006          187 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  266 (414)
Q Consensus       187 ~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp  266 (414)
                      ..+...|..++..|++.+|+..|.+++.    ..|.+           ..++.++|.++..++++++|+..+.+++...|
T Consensus        36 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  100 (136)
T 2fo7_A           36 EAWYNLGNAYYKQGDYDEAIEYYQKALE----LDPRS-----------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP  100 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred             hHHHHHHHHHHHhcCHHHHHHHHHHHHH----HCCCc-----------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence            3455678888889999999999999998    45544           56789999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          267 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       267 ~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      .+..+++.+|.++..+|++++|+..|++++.++|++
T Consensus       101 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A          101 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             CChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence            999999999999999999999999999999999863

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.09  E-value=1.2e-09  Score=106.24  Aligned_cols=143  Identities=16%  Similarity=0.263  Sum_probs=90.7

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHH-----------------H------HHhhhhhHHHHHHH
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG-----------------K------VFVGKRNLLHLNVA  242 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~-----------------~------~~~~~~~~~~~N~a  242 (414)
                      +..+...|..+...|++.+|+..|.+++.    ..|.+..-.                 .      ...+....++.++|
T Consensus       169 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  244 (388)
T 1w3b_A          169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVT----LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA  244 (388)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHH
Confidence            45566667777777777777777777776    344431100                 0      01111245677777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 015006          243 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVES  322 (414)
Q Consensus       243 ~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~  322 (414)
                      .++.++|++++|+..+.++++++|.++.+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+........ 
T Consensus       245 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~-  322 (388)
T 1w3b_A          245 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH-ADSLNNLANIKREQGNIE-  322 (388)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTTTCHH-
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc-HHHHHHHHHHHHHcCCHH-
Confidence            778888888888888888888777777778888888888888888888888888877776 455555555544333222 


Q ss_pred             HHHHHHHhhccC
Q 015006          323 KARKQFKGLFDK  334 (414)
Q Consensus       323 ~~~~~~~~~~~~  334 (414)
                      .....+.++...
T Consensus       323 ~A~~~~~~al~~  334 (388)
T 1w3b_A          323 EAVRLYRKALEV  334 (388)
T ss_dssp             HHHHHHHHHTTS
T ss_pred             HHHHHHHHHHhc
Confidence            223444444443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.09  E-value=9e-10  Score=103.94  Aligned_cols=112  Identities=21%  Similarity=0.257  Sum_probs=61.1

Q ss_pred             HHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHH-------------------HHH------hhhhhHHHHHH
Q 015006          187 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG-------------------KVF------VGKRNLLHLNV  241 (414)
Q Consensus       187 ~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~-------------------~~~------~~~~~~~~~N~  241 (414)
                      ..+...|..+.+.|++.+|+..|++++.    ..|.+....                   ..+      .+....+++|+
T Consensus       131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~----~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~l  206 (291)
T 3mkr_A          131 ECMAMTVQILLKLDRLDLARKELKKMQD----QDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQ  206 (291)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHh----hCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            3445566677777777777777777776    344331000                   000      00113345555


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhhCCCC
Q 015006          242 AACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEE-AQRDFEMMMKVDKSS  302 (414)
Q Consensus       242 a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~e-A~~~~~~al~l~P~n  302 (414)
                      |.|+.++|+|++|+..+.++|.++|+++.+++++|.++..+|++++ |...++++++++|++
T Consensus       207 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~  268 (291)
T 3mkr_A          207 AACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH  268 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCC
Confidence            5555555555555555555555555555555555555555555544 344555555555555

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.09  E-value=3.9e-10  Score=94.16  Aligned_cols=85  Identities=11%  Similarity=0.082  Sum_probs=76.9

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                      ...++++|.++++.|+|.+|+..+.+++.++|.++.+++.+|.++..+|+|++|+..|++|+.++|++ ..+...+..+.
T Consensus        18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~   96 (142)
T 2xcb_A           18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE-PRFPFHAAECH   96 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-THHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-cHHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999998 56777777776


Q ss_pred             HHHHHH
Q 015006          315 KQRQEV  320 (414)
Q Consensus       315 ~~~~~~  320 (414)
                      ..+...
T Consensus        97 ~~~g~~  102 (142)
T 2xcb_A           97 LQLGDL  102 (142)
T ss_dssp             HHTTCH
T ss_pred             HHcCCH
Confidence            555433

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.08  E-value=2.6e-09  Score=86.90  Aligned_cols=98  Identities=12%  Similarity=0.084  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 015006          236 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  315 (414)
Q Consensus       236 ~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~  315 (414)
                      ..++++|.++++.|+|.+|+..+.++++++|+++.+++.+|.++..+|++++|+..|++|++++|++ ..+...+..+..
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~la~~~~   96 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD-IAVHAALAVSHT   96 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHH
Confidence            3567899999999999999999999999999999999999999999999999999999999999998 678888888776


Q ss_pred             HHHHHHHHHHHHHHhhccCC
Q 015006          316 QRQEVESKARKQFKGLFDKK  335 (414)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~  335 (414)
                      ......+. ...+.+.+...
T Consensus        97 ~~g~~~~A-~~~~~~al~~~  115 (121)
T 1hxi_A           97 NEHNANAA-LASLRAWLLSQ  115 (121)
T ss_dssp             HHHHHHHH-HHHHHHHHC--
T ss_pred             HcCCHHHH-HHHHHHHHHhC
Confidence            66544433 34555555443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.08  E-value=1.9e-09  Score=81.62  Aligned_cols=79  Identities=24%  Similarity=0.446  Sum_probs=73.1

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                      ..++.++|.+++.+++|.+|+..+.+++.++|.++.+++++|.++..+|++++|+..|+++++++|++ ..+...+..+.
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~   87 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-HHHHHHHHHHH
Confidence            56889999999999999999999999999999999999999999999999999999999999999998 56766666654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.08  E-value=6.1e-10  Score=106.87  Aligned_cols=101  Identities=22%  Similarity=0.366  Sum_probs=63.3

Q ss_pred             HHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 015006          187 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  266 (414)
Q Consensus       187 ~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp  266 (414)
                      ..+...|..++..|+|.+|+..|.+++.    ..|.+           ..++.++|.++.++|++++|+..+.+++.++|
T Consensus       218 ~~~~~l~~~~~~~g~~~~A~~~~~~al~----~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  282 (368)
T 1fch_A          218 DVQCGLGVLFNLSGEYDKAVDCFTAALS----VRPND-----------YLLWNKLGATLANGNQSEEAVAAYRRALELQP  282 (368)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCcCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            3344556666666666666666666666    34433           34566666666666666666666666666666


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          267 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       267 ~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      .++.+++.+|.++..+|++++|+..|++++++.|++
T Consensus       283 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  318 (368)
T 1fch_A          283 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS  318 (368)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred             CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            666666666666666666666666666666666654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.08  E-value=8.4e-10  Score=103.79  Aligned_cols=121  Identities=17%  Similarity=0.216  Sum_probs=98.2

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +..+...|..++..|+|.+|+..|.+++...........      ......++.++|.++.++|++++|+..+.++++++
T Consensus       193 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  266 (330)
T 3hym_B          193 PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT------VDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI  266 (330)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCT------TTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccccc------ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence            344566777788888888888888888875432211100      01225689999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 015006          266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  313 (414)
Q Consensus       266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~  313 (414)
                      |+++.+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+
T Consensus       267 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~  313 (330)
T 3hym_B          267 PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDD-TFSVTMLGHC  313 (330)
T ss_dssp             TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCC-HHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCc-hHHHHHHHHH
Confidence            9999999999999999999999999999999999998 5666666654

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.06  E-value=1.1e-09  Score=100.48  Aligned_cols=116  Identities=16%  Similarity=0.204  Sum_probs=99.5

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +..+...|..++..|+|.+|+..|.+++.    ..|.+           ..++.++|.+|..+|+|++|+..+.++++++
T Consensus        74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  138 (272)
T 3u4t_A           74 SADFEYYGKILMKKGQDSLAIQQYQAAVD----RDTTR-----------LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT  138 (272)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTC-----------THHHHHHHHHHHHTTCHHHHHHHHGGGCCSS
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHh----cCccc-----------HHHHHHHHHHHHHccCHHHHHHHHHHHhhcC
Confidence            55577889999999999999999999999    56655           5689999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 015006          266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  317 (414)
Q Consensus       266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~  317 (414)
                      |.++.+++.+|......+++++|+..|+++++++|++ ..+...+..+...+
T Consensus       139 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~~~~~~~~~  189 (272)
T 3u4t_A          139 TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI-YIGYLWRARANAAQ  189 (272)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-hHHHHHHHHHHHHc
Confidence            9999999999955555569999999999999999998 55655555554433

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.06  E-value=3.1e-09  Score=97.35  Aligned_cols=131  Identities=16%  Similarity=0.157  Sum_probs=104.2

Q ss_pred             hhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 015006          191 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK  270 (414)
Q Consensus       191 ~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~k  270 (414)
                      ..+..+...|+|.+|+..|.+++..    .+.++       .....++.++|.++..+|+|++|+..+.+++.++|.++.
T Consensus        10 ~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~   78 (275)
T 1xnf_A           10 VLAVPLQPTLQQEVILARMEQILAS----RALTD-------DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE   78 (275)
T ss_dssp             GSCCCCCCCHHHHHHHHHHHHHHTS----SCCCH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH
T ss_pred             ceeeccCccchHHHHHHHHHHHHhc----ccccC-------chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHH
Confidence            3455667789999999999999983    22221       223678999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 015006          271 GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDK  334 (414)
Q Consensus       271 a~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  334 (414)
                      +++.+|.++..+|++++|+..|+++++++|.+ ..+...+..+........ .....+.+.+..
T Consensus        79 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~-~A~~~~~~a~~~  140 (275)
T 1xnf_A           79 VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-NYAHLNRGIALYYGGRDK-LAQDDLLAFYQD  140 (275)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-THHHHHHHHHHHHTTCHH-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCccc-cHHHHHHHHHHHHhccHH-HHHHHHHHHHHh
Confidence            99999999999999999999999999999997 567777776655443332 223344444443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.06  E-value=3e-09  Score=94.09  Aligned_cols=97  Identities=16%  Similarity=0.160  Sum_probs=49.4

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +..+...|..++..|++.+|+..|.+++.    ..|.+           ..++.++|.++..+|++++|+..+.+++.++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~   72 (225)
T 2vq2_A            8 SNIKTQLAMEYMRGQDYRQATASIEDALK----SDPKN-----------ELAWLVRAEIYQYLKVNDKAQESFRQALSIK   72 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHH----hCccc-----------hHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence            44555666666666666666666666666    33333           2344444444444444444444444444444


Q ss_pred             CCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHh
Q 015006          266 PAHVKGLYRRGMAYMAL-GEFEEAQRDFEMMMK  297 (414)
Q Consensus       266 p~~~ka~~r~g~a~~~l-~~~~eA~~~~~~al~  297 (414)
                      |.+..+++.+|.++..+ |++++|+..|+++++
T Consensus        73 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~  105 (225)
T 2vq2_A           73 PDSAEINNNYGWFLCGRLNRPAESMAYFDKALA  105 (225)
T ss_dssp             TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred             CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence            44444444444444444 444444444444444

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.06  E-value=1.4e-09  Score=85.18  Aligned_cols=67  Identities=16%  Similarity=0.307  Sum_probs=64.7

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015006          235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  301 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~  301 (414)
                      ..+++++|.+++++|+|++|+..+.++++++|+++.+++.+|.++..+|++++|+..|++++++.|.
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            6789999999999999999999999999999999999999999999999999999999999999764

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.06  E-value=2.3e-09  Score=104.12  Aligned_cols=125  Identities=20%  Similarity=0.153  Sum_probs=83.5

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHH-----------------------HHHhhhhhHHHHHHH
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG-----------------------KVFVGKRNLLHLNVA  242 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~-----------------------~~~~~~~~~~~~N~a  242 (414)
                      +..+...|..+...|++.+|+..|.+++.    ..|.+..-.                       ....+....++.++|
T Consensus       135 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg  210 (388)
T 1w3b_A          135 YCVRSDLGNLLKALGRLEEAKACYLKAIE----TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLG  210 (388)
T ss_dssp             THHHHHHHHHHHTTSCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            44566788889999999999999999998    455542110                       001122234566667


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 015006          243 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  315 (414)
Q Consensus       243 ~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~  315 (414)
                      .++..+++|++|+..+.+++.++|+++.+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+..
T Consensus       211 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~  282 (388)
T 1w3b_A          211 NVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF-PDAYCNLANALK  282 (388)
T ss_dssp             HHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC-HHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHH
Confidence            777777777777777777777777777777777777777777777777777777777766 445555554443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.06  E-value=2.4e-09  Score=97.16  Aligned_cols=111  Identities=14%  Similarity=0.199  Sum_probs=65.5

Q ss_pred             HHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hC
Q 015006          188 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD--AN  265 (414)
Q Consensus       188 ~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~--~d  265 (414)
                      .+...|..++..|++.+|+..|.+++.    ..|.+           ..++.++|.++..+|++++|+..+.+++.  ..
T Consensus        73 ~~~~la~~~~~~~~~~~A~~~~~~a~~----~~~~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  137 (252)
T 2ho1_A           73 AHAALAVVFQTEMEPKLADEEYRKALA----SDSRN-----------ARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLY  137 (252)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH----HCcCc-----------HHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccC
Confidence            445556666666677777777777666    33333           34555666666666666666666666666  55


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                      |.++.+++.+|.++..+|++++|+..|+++++++|.+ ..+...+..+.
T Consensus       138 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~  185 (252)
T 2ho1_A          138 PERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ-PSVALEMADLL  185 (252)
T ss_dssp             TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-HHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc-HHHHHHHHHHH
Confidence            5566666666666666666666666666666666655 34444444443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.06  E-value=2.8e-09  Score=94.33  Aligned_cols=65  Identities=18%  Similarity=0.219  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 015006          236 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK  300 (414)
Q Consensus       236 ~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P  300 (414)
                      .++.++|.++.++|++++|+..+.++++.+|.++.+++.+|.++..+|++++|+..|+++++++|
T Consensus       114 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  178 (225)
T 2vq2_A          114 IANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE  178 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            34455555555555555555555555555555555555555555555555555555555555555

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.04  E-value=1.4e-09  Score=102.33  Aligned_cols=117  Identities=14%  Similarity=0.158  Sum_probs=94.8

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHH----------
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSI----------  255 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~----------  255 (414)
                      +..+...|..++..|++.+|+..|++++.    ..|.+           ..+++++|.+++.+|++++|+          
T Consensus       117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~----~~P~~-----------~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~  181 (287)
T 3qou_A          117 EELXAQQAMQLMQESNYTDALPLLXDAWQ----LSNQN-----------GEIGLLLAETLIALNRSEDAEAVLXTIPLQD  181 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HTTSC-----------HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG
T ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHH----hCCcc-----------hhHHHHHHHHHHHCCCHHHHHHHHHhCchhh
Confidence            45577889999999999999999999999    67777           456777777777777776665          


Q ss_pred             ------------------------HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHH
Q 015006          256 ------------------------EACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE-PDATAAL  310 (414)
Q Consensus       256 ------------------------~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~-~~~~~~l  310 (414)
                                              ..+.+++..+|+++.+++.+|.++...|++++|+..|.++++++|++. ..++..|
T Consensus       182 p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l  261 (287)
T 3qou_A          182 QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTF  261 (287)
T ss_dssp             CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHH
T ss_pred             cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHH
Confidence                                    445556778899999999999999999999999999999999999862 3566666


Q ss_pred             HHHHHHH
Q 015006          311 SKLKKQR  317 (414)
Q Consensus       311 ~~~~~~~  317 (414)
                      ..+...+
T Consensus       262 ~~~~~~~  268 (287)
T 3qou_A          262 QEILAAL  268 (287)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHc
Confidence            6665544

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.04  E-value=2.6e-09  Score=100.73  Aligned_cols=90  Identities=14%  Similarity=0.147  Sum_probs=68.2

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 015006          247 KLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARK  326 (414)
Q Consensus       247 kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~~~~  326 (414)
                      ..+++++|+..+.++++.+|+++.+++.+|.++..+|++++|+..|++|++++|++ .++..++..+........+....
T Consensus       178 ~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~-~~~l~~l~~~~~~~g~~~eaa~~  256 (291)
T 3mkr_A          178 GGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH-PETLINLVVLSQHLGKPPEVTNR  256 (291)
T ss_dssp             CTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCCHHHHHH
Confidence            34889999999999999999999999999999999999999999999999999988 67777777665554433333334


Q ss_pred             HHHhhccCCCC
Q 015006          327 QFKGLFDKKPG  337 (414)
Q Consensus       327 ~~~~~~~~~~~  337 (414)
                      .+++.....+.
T Consensus       257 ~~~~~~~~~P~  267 (291)
T 3mkr_A          257 YLSQLKDAHRS  267 (291)
T ss_dssp             HHHHHHHHCTT
T ss_pred             HHHHHHHhCCC
Confidence            44444444433

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.04  E-value=2.5e-09  Score=108.23  Aligned_cols=134  Identities=11%  Similarity=0.043  Sum_probs=105.7

Q ss_pred             hhhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHH
Q 015006          179 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEAC  258 (414)
Q Consensus       179 ~~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~  258 (414)
                      ..+.+..+....+.+..+..+|+|.+|+..|.++|.....+...+       +.....+++|+|.+|..+|+|++|+..+
T Consensus       302 v~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~-------Hp~~a~~~~nLa~~y~~~g~~~eA~~~~  374 (490)
T 3n71_A          302 VKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADT-------NLYVLRLLSIASEVLSYLQAYEEASHYA  374 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTT-------SHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            345556677777888888899999999999999999776554444       4456789999999999999999999999


Q ss_pred             HHHHHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHHH---HHHHHHHHHHHHH
Q 015006          259 NKVLDAN--------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV-----DKSSEPDAT---AALSKLKKQRQEV  320 (414)
Q Consensus       259 ~~al~~d--------p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l-----~P~n~~~~~---~~l~~~~~~~~~~  320 (414)
                      .++|++.        |+-+.++.++|.+|..+|+|++|+..|++||++     -|++ +.+.   ..|..+...+...
T Consensus       375 ~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H-p~~~~~~~~l~~~~~e~~~~  451 (490)
T 3n71_A          375 RRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH-PITKDLEAMRMQTEMELRMF  451 (490)
T ss_dssp             HHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHHHHHH
Confidence            9999763        445788999999999999999999999999986     5666 3344   3444444433333

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.04  E-value=2.9e-09  Score=83.74  Aligned_cols=68  Identities=19%  Similarity=0.340  Sum_probs=65.9

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      ...+.++|.+++.+|+|++|+..+.++++++|.++.+++++|.++..+|++++|+..|+++++++|++
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            45789999999999999999999999999999999999999999999999999999999999999987

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.04  E-value=2e-09  Score=101.00  Aligned_cols=118  Identities=17%  Similarity=0.263  Sum_probs=96.4

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +..+...|..++..|++.+|+..|.+++.    ..|.+           ..++.++|.++..+|++++|+..+.++++++
T Consensus       172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  236 (327)
T 3cv0_A          172 AQLHASLGVLYNLSNNYDSAAANLRRAVE----LRPDD-----------AQLWNKLGATLANGNRPQEALDAYNRALDIN  236 (327)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            34566778888888999999999999988    45555           5678899999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----------HHHHHHHHHHHHHHHH
Q 015006          266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS-----------EPDATAALSKLKKQRQ  318 (414)
Q Consensus       266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n-----------~~~~~~~l~~~~~~~~  318 (414)
                      |.++.+++.+|.++..+|++++|+..|+++++++|++           ...+...+..+...+.
T Consensus       237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  300 (327)
T 3cv0_A          237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMN  300 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999998882           2456556665554443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.03  E-value=1.7e-09  Score=103.73  Aligned_cols=101  Identities=13%  Similarity=0.124  Sum_probs=94.0

Q ss_pred             HHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 015006          188 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  267 (414)
Q Consensus       188 ~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~  267 (414)
                      .+...|..++..|+|.+|+..|.+++.    ..|.+           ..++.++|.|+.++|++++|+..+.++++++|.
T Consensus        66 ~~~~~~~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  130 (368)
T 1fch_A           66 QPFEEGLRRLQEGDLPNAVLLFEAAVQ----QDPKH-----------MEAWQYLGTTQAENEQELLAISALRRCLELKPD  130 (368)
T ss_dssp             SHHHHHHHHHHTTCHHHHHHHHHHHHH----SCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC
Confidence            345678889999999999999999999    67766           678999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 015006          268 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  303 (414)
Q Consensus       268 ~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~  303 (414)
                      ++.+++.+|.++..+|++++|+..|+++++++|.+.
T Consensus       131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  166 (368)
T 1fch_A          131 NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYA  166 (368)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTG
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Confidence            999999999999999999999999999999999863

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.03  E-value=2e-09  Score=97.65  Aligned_cols=117  Identities=18%  Similarity=0.161  Sum_probs=103.1

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      .+..+...|..++..|+|.+|+..|.+++.    ..|.+           ..++.++|.++..+|++++|+..+.+++.+
T Consensus        36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----~~~~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  100 (252)
T 2ho1_A           36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALE----IDPSS-----------ADAHAALAVVFQTEMEPKLADEEYRKALAS  100 (252)
T ss_dssp             HHHHHHHHHHHHHHTTCTGGGHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHh----cCCCh-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            377888999999999999999999999998    45555           568999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHHH
Q 015006          265 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK--VDKSSEPDATAALSKLKKQR  317 (414)
Q Consensus       265 dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~--l~P~n~~~~~~~l~~~~~~~  317 (414)
                      +|.+..+++.+|.++..+|++++|+..|++++.  ..|.+ ..+...+..+....
T Consensus       101 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~la~~~~~~  154 (252)
T 2ho1_A          101 DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPER-SRVFENLGLVSLQM  154 (252)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTH-HHHHHHHHHHHHHT
T ss_pred             CcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCccc-HHHHHHHHHHHHHc
Confidence            999999999999999999999999999999999  77775 55666666554433

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1

Probab=99.02  E-value=1.8e-10  Score=96.06  Aligned_cols=57  Identities=32%  Similarity=0.464  Sum_probs=42.6

Q ss_pred             ccccCCcCcEEEEEEcCCCcCCC-CCCCCCCCCCeeeEEEEeeEEEeeeeec--CCCceEE
Q 015006            2 GIGTMTREEKAVIYVTSQYLTPS-PLMPVVEGCEEVHFEVELVHLIQVRDML--GDGRLIK   59 (414)
Q Consensus         2 ~~~~m~~Ge~~~~~i~~~~~~g~-~~~~~ip~~~~l~~~vel~~~~~~~dv~--~dg~~~k   59 (414)
                      ||.+|++||++.|.|||++|||. +.++.||+|++|+|+|+|+++.. .|+.  +||+|+|
T Consensus        76 ~l~gm~~Ge~~~v~ip~~~aYG~~g~~~~Ip~~~~l~f~v~l~~i~~-~~l~~~~d~~v~k  135 (135)
T 1r9h_A           76 GVATMTKGEVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEWSA-EDISPDRDGTILR  135 (135)
T ss_dssp             HHTTCCBTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC--------------
T ss_pred             HHhcCCCCCEEEEEEChHHcCCCCCCCCCcCcCCcEEEEEEEEEeec-CCcCcCCCCcccC
Confidence            68999999999999999999998 45688999999999999999975 5888  8898876

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.01  E-value=4.3e-09  Score=98.86  Aligned_cols=117  Identities=13%  Similarity=0.063  Sum_probs=101.8

Q ss_pred             HHHHHhhhccccccc-cHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          186 AEKIRVTGNRLFKEG-KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g-~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      +..+...|..++..| ++.+|+..|.+++.    ..|.+           ..++.++|.++..+|++++|+..+.+++.+
T Consensus        90 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~----~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  154 (330)
T 3hym_B           90 PVSWFAVGCYYLMVGHKNEHARRYLSKATT----LEKTY-----------GPAWIAYGHSFAVESEHDQAMAAYFTAAQL  154 (330)
T ss_dssp             THHHHHHHHHHHHSCSCHHHHHHHHHHHHT----TCTTC-----------THHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHH----hCCcc-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            345667788888999 99999999999998    56665           568999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 015006          265 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  318 (414)
Q Consensus       265 dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~  318 (414)
                      .|.+..+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+.....
T Consensus       155 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~~  207 (330)
T 3hym_B          155 MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED-PFVMHEVGVVAFQNG  207 (330)
T ss_dssp             TTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC-HHHHHHHHHHHHHTT
T ss_pred             ccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHcc
Confidence            99999999999999999999999999999999999998 567667766655443

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.01  E-value=1.6e-09  Score=107.90  Aligned_cols=122  Identities=16%  Similarity=0.064  Sum_probs=98.3

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +..+...|..++..|+|++|+..|++|+.++....+..      .......+|.|+|.+|..+|+|++|+.++.+++++.
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~------~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~  124 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQ------AEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC  124 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGG------CTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccc------cchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence            55677889999999999999999999998654322111      012236689999999999999999999999999874


Q ss_pred             --------CCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          266 --------PAHVKGLYRRGMAYMALG--EFEEAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       266 --------p~~~ka~~r~g~a~~~l~--~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                              +..+.++..+|.++..++  +|++|+..|++|++++|++ ..+...+..+.
T Consensus       125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~-~~~~~~~~~~~  182 (472)
T 4g1t_A          125 EKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN-PEFTSGLAIAS  182 (472)
T ss_dssp             HHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTC-HHHHHHHHHHH
T ss_pred             HhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence                    456788999999888765  6999999999999999998 66766666554

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.01  E-value=1.4e-09  Score=94.11  Aligned_cols=114  Identities=17%  Similarity=0.204  Sum_probs=80.2

Q ss_pred             HHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHH--------------
Q 015006          189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKS--------------  254 (414)
Q Consensus       189 ~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A--------------  254 (414)
                      +...|..++..|+|.+|+..|++++.    ..|.+           ..++.++|.+++.+|++++|              
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~----~~P~~-----------~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~   73 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSD----ELQSR-----------GDVKLAKADCLLETKQFELAQELLATIPLEYQDN   73 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCH----HHHTS-----------HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCc-----------HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCCh
Confidence            34566677777888888888888877    45554           34555555555555555554              


Q ss_pred             --------------------HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHH
Q 015006          255 --------------------IEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE-PDATAALSKL  313 (414)
Q Consensus       255 --------------------~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~-~~~~~~l~~~  313 (414)
                                          +..+.++++++|+++.+++.+|.++..+|++++|+..|+++++++|++. ..+...+..+
T Consensus        74 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~  153 (176)
T 2r5s_A           74 SYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDI  153 (176)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHH
Confidence                                4455566677888888899999999999999999999999999988641 3466666655


Q ss_pred             HHHH
Q 015006          314 KKQR  317 (414)
Q Consensus       314 ~~~~  317 (414)
                      ...+
T Consensus       154 ~~~~  157 (176)
T 2r5s_A          154 LSAL  157 (176)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            5443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.01  E-value=4e-09  Score=89.94  Aligned_cols=101  Identities=21%  Similarity=0.219  Sum_probs=84.9

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                      ...+.++|.++++.++|++|+..+.++++++|.++.+++++|.++..+|+|++|+..|+++++++|++ ..+...+..+.
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~   89 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY-SKAWSRLGLAR   89 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence            66899999999999999999999999999999999999999999999999999999999999999998 67888888777


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCC
Q 015006          315 KQRQEVESKARKQFKGLFDKKPG  337 (414)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~  337 (414)
                      ..+.+..+ ....+.+.+...+.
T Consensus        90 ~~~g~~~~-A~~~~~~al~~~p~  111 (164)
T 3sz7_A           90 FDMADYKG-AKEAYEKGIEAEGN  111 (164)
T ss_dssp             HHTTCHHH-HHHHHHHHHHHHSS
T ss_pred             HHccCHHH-HHHHHHHHHHhCCC
Confidence            66554433 23444444444333

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.01  E-value=2.3e-10  Score=88.82  Aligned_cols=68  Identities=22%  Similarity=0.475  Sum_probs=54.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 015006          239 LNVAACLLKLGECRKSIEACNKVLDANPAHVK-GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDAT  307 (414)
Q Consensus       239 ~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~k-a~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~  307 (414)
                      +++|.++++.++|++|+..+.++++.+|.++. +++.+|.++..+|++++|+..|+++++++|++ ..+.
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~   72 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS-PALQ   72 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS-THHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-HHHH
Confidence            46788888888888888888888888888888 88888888888888888888888888888877 3443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.01  E-value=3.4e-09  Score=95.56  Aligned_cols=136  Identities=15%  Similarity=0.167  Sum_probs=102.8

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHH------------------
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK------------------  247 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~k------------------  247 (414)
                      ...+...|..+++.|+|.+|+..|.+++.    ..|.+..        ...+++++|.|+.+                  
T Consensus        41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~----~~P~~~~--------~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~  108 (225)
T 2yhc_A           41 QQVQLDLIYAYYKNADLPLAQAAIDRFIR----LNPTHPN--------IDYVMYMRGLTNMALDDSALQGFFGVDRSDRD  108 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCTT--------HHHHHHHHHHHHHHHHC--------------C
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----HCcCCCc--------HHHHHHHHHHHHHhhhhhhhhhhhccchhhcC
Confidence            34567789999999999999999999999    5666521        12467788888876                  


Q ss_pred             cCCHHHHHHHHHHHHHhCCCcHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH--HHHH
Q 015006          248 LGECRKSIEACNKVLDANPAHVKGL-----------------YRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP--DATA  308 (414)
Q Consensus       248 l~~~~~A~~~~~~al~~dp~~~ka~-----------------~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~--~~~~  308 (414)
                      ++++++|+..+.++++..|++..+.                 +.+|.++...|++++|+..|+++++..|++..  .+..
T Consensus       109 ~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~  188 (225)
T 2yhc_A          109 PQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALP  188 (225)
T ss_dssp             CHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHH
Confidence            5789999999999999999987654                 67899999999999999999999999999742  3444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccC
Q 015006          309 ALSKLKKQRQEVESKARKQFKGLFDK  334 (414)
Q Consensus       309 ~l~~~~~~~~~~~~~~~~~~~~~~~~  334 (414)
                      .+..+...+....+. ...++.+...
T Consensus       189 ~l~~~~~~~g~~~~A-~~~~~~l~~~  213 (225)
T 2yhc_A          189 LMENAYRQMQMNAQA-EKVAKIIAAN  213 (225)
T ss_dssp             HHHHHHHHTTCHHHH-HHHHHHHHHC
T ss_pred             HHHHHHHHcCCcHHH-HHHHHHHHhh
Confidence            455554444333322 3444444443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.00  E-value=1.8e-09  Score=101.59  Aligned_cols=109  Identities=12%  Similarity=0.088  Sum_probs=93.3

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL-GECRKSIEACNKVLD  263 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl-~~~~~A~~~~~~al~  263 (414)
                      .+..+.+.|+.+.+.|+|.+|+.+|.+|+.+.....  +       ......++.|+|.+|..+ |++++|+.++.+|++
T Consensus        76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g--~-------~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~  146 (292)
T 1qqe_A           76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG--Q-------FRRGANFKFELGEILENDLHDYAKAIDCYELAGE  146 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--C-------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC--C-------HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence            477888999999999999999999999998653221  1       112256899999999995 999999999999999


Q ss_pred             hCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          264 ANPAH------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       264 ~dp~~------~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      +.|.+      ..++.++|.++..+|+|++|+..|++++++.|++
T Consensus       147 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  191 (292)
T 1qqe_A          147 WYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN  191 (292)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred             HHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC
Confidence            98754      5789999999999999999999999999999976

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.99  E-value=2.4e-09  Score=98.05  Aligned_cols=126  Identities=15%  Similarity=0.157  Sum_probs=102.7

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      .+..+...|..++..|+|.+|+..|.+++.........+       ......++.++|.++..+|+|++|+..+.+++.+
T Consensus        42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  114 (283)
T 3edt_B           42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKD-------HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI  114 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCc-------chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            477788999999999999999999999998653321111       1234678999999999999999999999999998


Q ss_pred             --------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHHHH
Q 015006          265 --------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV--------DKSSEPDATAALSKLKKQRQ  318 (414)
Q Consensus       265 --------dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l--------~P~n~~~~~~~l~~~~~~~~  318 (414)
                              +|....+++++|.++..+|++++|+..|++++++        .|.. ..+...+..+.....
T Consensus       115 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g  183 (283)
T 3edt_B          115 REKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV-AKTKNNLASCYLKQG  183 (283)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHH-HHHHHHHHHHHHHHT
T ss_pred             HHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHHHHcC
Confidence                    5778999999999999999999999999999998        4443 445556666554443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.99  E-value=3.1e-09  Score=90.54  Aligned_cols=87  Identities=14%  Similarity=0.108  Sum_probs=75.0

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------cHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhh----
Q 015006          235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPA-------HVK-----GLYRRGMAYMALGEFEEAQRDFEMMMKV----  298 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~-------~~k-----a~~r~g~a~~~l~~~~eA~~~~~~al~l----  298 (414)
                      +..+.|+|.+++++|+|++|+..|++||+++|+       +..     +|+++|.|+..+|+|++|+.+|.+||++    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            557899999999999999999999999999999       444     9999999999999999999999999999    


Q ss_pred             ---CCCCHHHHH----HHHHHHHHHHHHHHH
Q 015006          299 ---DKSSEPDAT----AALSKLKKQRQEVES  322 (414)
Q Consensus       299 ---~P~n~~~~~----~~l~~~~~~~~~~~~  322 (414)
                         +|++ ..+.    ..+..+...+....+
T Consensus        91 ~e~~pd~-~~A~~~~~~~rG~aL~~lgr~eE  120 (159)
T 2hr2_A           91 GELNQDE-GKLWISAVYSRALALDGLGRGAE  120 (159)
T ss_dssp             CCTTSTH-HHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             ccCCCch-HHHHHHHHHhHHHHHHHCCCHHH
Confidence               9986 5676    666666555544433

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.98  E-value=6.2e-09  Score=87.71  Aligned_cols=104  Identities=13%  Similarity=0.178  Sum_probs=87.2

Q ss_pred             ccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CcHHHH
Q 015006          198 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG---ECRKSIEACNKVLDAN-P-AHVKGL  272 (414)
Q Consensus       198 k~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~---~~~~A~~~~~~al~~d-p-~~~ka~  272 (414)
                      .......+.+.|.+.+.    ..+.+           ..+.+|.|.|+.+.+   ++.+++..++.+++.+ | .+..++
T Consensus        10 ~~~~l~~~~~~y~~e~~----~~~~~-----------~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~l   74 (152)
T 1pc2_A           10 SVEDLLKFEKKFQSEKA----AGSVS-----------KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYV   74 (152)
T ss_dssp             CHHHHHHHHHHHHHHHH----TTCCC-----------HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHc----cCCCc-----------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHH
Confidence            33455667788888876    44444           568999999999998   7779999999999999 7 679999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 015006          273 YRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  317 (414)
Q Consensus       273 ~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~  317 (414)
                      |.+|.+++++++|++|+..++++|+++|+| ..+......+..++
T Consensus        75 Y~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n-~QA~~Lk~~ie~~~  118 (152)
T 1pc2_A           75 FYLAVGNYRLKEYEKALKYVRGLLQTEPQN-NQAKELERLIDKAM  118 (152)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHH
Confidence            999999999999999999999999999999 66777666665544

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.97  E-value=1.7e-09  Score=101.57  Aligned_cols=108  Identities=15%  Similarity=0.129  Sum_probs=92.5

Q ss_pred             HHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015006          184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  263 (414)
Q Consensus       184 ~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~  263 (414)
                      ..+..+...|..++..|+|.+|+..|.+|+..+..... +       ......+++|+|.+|.++|+|++|+.++.++++
T Consensus       153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~-~-------~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~  224 (293)
T 3u3w_A          153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD-N-------EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE  224 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC-C-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-c-------hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            34667889999999999999999999999986654322 2       234467999999999999999999999999998


Q ss_pred             hCCCc------HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhC
Q 015006          264 ANPAH------VKGLYRRGMAYMALG-EFEEAQRDFEMMMKVD  299 (414)
Q Consensus       264 ~dp~~------~ka~~r~g~a~~~l~-~~~eA~~~~~~al~l~  299 (414)
                      +.+..      +.+++++|.++..+| .+++|+..|++|+.+.
T Consensus       225 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          225 ISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            87543      889999999999999 5799999999999873

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.96  E-value=4.5e-09  Score=79.55  Aligned_cols=84  Identities=26%  Similarity=0.412  Sum_probs=76.2

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      .+..+...|..++..|+|.+|+..|.+++.    ..|.+           ..++.++|.++.+++++++|+..+.+++.+
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~----~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~   72 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALE----LDPNN-----------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL   72 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHh----cCCCC-----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            356777889999999999999999999999    45655           568999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcC
Q 015006          265 NPAHVKGLYRRGMAYMALG  283 (414)
Q Consensus       265 dp~~~ka~~r~g~a~~~l~  283 (414)
                      +|.++.+++++|.++..+|
T Consensus        73 ~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           73 DPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             CTTCHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHhcC
Confidence            9999999999999998765

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.95  E-value=6.1e-09  Score=80.63  Aligned_cols=62  Identities=13%  Similarity=0.077  Sum_probs=55.5

Q ss_pred             hhhH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          233 KRNL-LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       233 ~~~~-~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      .... +++++|.|++++|+|++|+..+.++++++|++..++++        +.+.+|+..|++++.++|++
T Consensus        32 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           32 VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMVMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHHHHHHHHHCCTTHHHHCC
T ss_pred             CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHHHHHHHHHHHHhccCccc
Confidence            3456 99999999999999999999999999999999998865        67888999999999888875

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.95  E-value=1.8e-09  Score=101.68  Aligned_cols=109  Identities=15%  Similarity=0.097  Sum_probs=89.5

Q ss_pred             HHHHHHhhhcccccc-ccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015006          185 EAEKIRVTGNRLFKE-GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  263 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~-g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~  263 (414)
                      .+..+...|..+... |+|.+|+..|.+|+.+.....  +       ......++.|+|.++.++|+|++|+..+.++++
T Consensus       116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~--~-------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  186 (292)
T 1qqe_A          116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ--S-------VALSNKCFIKCADLKALDGQYIEASDIYSKLIK  186 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT--C-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC--C-------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            356788899999996 999999999999999543211  1       112246899999999999999999999999999


Q ss_pred             hCCCcHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          264 ANPAHVK-------GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       264 ~dp~~~k-------a~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      +.|.+..       +++++|.++..+|++++|+..|+++++++|++
T Consensus       187 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  232 (292)
T 1qqe_A          187 SSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF  232 (292)
T ss_dssp             TTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred             HHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            9987643       78999999999999999999999999999986

>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5

Probab=98.95  E-value=1.4e-09  Score=108.16  Aligned_cols=85  Identities=16%  Similarity=0.249  Sum_probs=74.9

Q ss_pred             CCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCCeEEEEecCCCccccCCCCCCC
Q 015006           74 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANV  153 (414)
Q Consensus        74 p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~~i  153 (414)
                      +..||.|+|||+|+.   +|++| +++.   +.|+.|.+|.|.+++||+.+|.+|++|++..|.+++..+||..+.    
T Consensus       158 ~~~gD~V~i~y~g~~---dG~~f-d~~~---~~~~~~~lG~g~~ipgfee~L~G~k~Ge~~~v~v~~~~~yg~~~l----  226 (432)
T 1w26_A          158 VEAEDRVTIDFTGSV---DGEEF-EGGK---ASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENL----  226 (432)
T ss_dssp             CCTTCEEEECEEEES---SSCBC-SSCC---CSSEEEETTSCCSCTTHHHHSSSCCSSCEEEEEEECCTTCSCTTT----
T ss_pred             CCCCCEEEEEEEEee---CCeEc-cCCC---ccceEEEeCCCCcchHHHHHhCCCCCCCEEEEEECCchhhCCCCC----
Confidence            468999999999994   48988 5542   579999999999999999999999999999999999999997653    


Q ss_pred             CCCcceEEEEEEcccCC
Q 015006          154 PEGAHIQWEIELLGFEK  170 (414)
Q Consensus       154 p~~~~l~~eieL~~~~~  170 (414)
                       +|.++.|+|+|+++..
T Consensus       227 -ag~~~~F~V~v~~v~~  242 (432)
T 1w26_A          227 -KGKAAKFAINLKKVEE  242 (432)
T ss_dssp             -SSCEEEEEEECCEECC
T ss_pred             -CCceEEEEEEEEEEec
Confidence             5789999999999875

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.93  E-value=1.1e-08  Score=103.29  Aligned_cols=83  Identities=14%  Similarity=0.161  Sum_probs=72.5

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                      ..++.++|.++..+|+|++|+..+.+++.++|.++.+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+.
T Consensus       310 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~  388 (537)
T 3fp2_A          310 PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL-PEVPTFFAEIL  388 (537)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-THHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHH
Confidence            56889999999999999999999999999999999999999999999999999999999999999987 56766776665


Q ss_pred             HHHH
Q 015006          315 KQRQ  318 (414)
Q Consensus       315 ~~~~  318 (414)
                      ....
T Consensus       389 ~~~g  392 (537)
T 3fp2_A          389 TDRG  392 (537)
T ss_dssp             HHTT
T ss_pred             HHhC
Confidence            4443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.92  E-value=6.4e-09  Score=107.04  Aligned_cols=102  Identities=10%  Similarity=0.047  Sum_probs=95.6

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +..+...|..++..|+|++|+..|.+++.    ..|.+           ..+++|+|.+|.++|++++|+..+.++++++
T Consensus        57 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  121 (568)
T 2vsy_A           57 PEAVARLGRVRWTQQRHAEAAVLLQQASD----AAPEH-----------PGIALWLGHALEDAGQAEAAAAAYTRAHQLL  121 (568)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            45677889999999999999999999999    56766           6689999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCC
Q 015006          266 PAHVKGLYRRGMAYMAL---GEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       266 p~~~ka~~r~g~a~~~l---~~~~eA~~~~~~al~l~P~n  302 (414)
                      |+++.+++.+|.++..+   |++++|+..|+++++++|++
T Consensus       122 p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~  161 (568)
T 2vsy_A          122 PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA  161 (568)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred             CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence            99999999999999999   99999999999999999986

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.92  E-value=1.1e-08  Score=101.87  Aligned_cols=119  Identities=10%  Similarity=0.049  Sum_probs=96.1

Q ss_pred             hhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015006          182 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV  261 (414)
Q Consensus       182 ~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~a  261 (414)
                      .+..+....+.+...-..|+|.+|+..|.++|.+.......+       +...+..+.|+|.+|..+|+|++|+..+.++
T Consensus       294 ~~~~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~-------Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a  366 (433)
T 3qww_A          294 MVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDS-------NVYMLHMMYQAMGVCLYMQDWEGALKYGQKI  366 (433)
T ss_dssp             HHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTT-------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChh-------chHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence            333445555566666677899999999999999776554443       4456789999999999999999999999999


Q ss_pred             HHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHHHH
Q 015006          262 LDAN--------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV-----DKSSEPDATA  308 (414)
Q Consensus       262 l~~d--------p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l-----~P~n~~~~~~  308 (414)
                      |++.        |+-+..++++|.+|..+|+|++|+..|++|+++     -|++ +.+..
T Consensus       367 L~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~H-p~~~~  425 (433)
T 3qww_A          367 IKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDH-PYISE  425 (433)
T ss_dssp             HHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC-HHHHH
T ss_pred             HHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCC-hHHHH
Confidence            9763        455788999999999999999999999999987     5776 44443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.92  E-value=1.7e-08  Score=82.51  Aligned_cols=85  Identities=14%  Similarity=0.134  Sum_probs=77.5

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                      ...++++|.++++.++|++|+..+.+++.++|.++.+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+.
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~   87 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS-VKAHFFLGQCQ   87 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh-HHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999998 67777777776


Q ss_pred             HHHHHH
Q 015006          315 KQRQEV  320 (414)
Q Consensus       315 ~~~~~~  320 (414)
                      ......
T Consensus        88 ~~~~~~   93 (137)
T 3q49_B           88 LEMESY   93 (137)
T ss_dssp             HHTTCH
T ss_pred             HHHhhH
Confidence            555433

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=98.91  E-value=1.7e-08  Score=94.58  Aligned_cols=108  Identities=9%  Similarity=0.129  Sum_probs=97.1

Q ss_pred             cccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 015006          195 RLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYR  274 (414)
Q Consensus       195 ~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r  274 (414)
                      .++..|++.+|+..|.+++.    ..|.+           ..++.++|.++.++|++++|+..+.+++.++|.++.+++.
T Consensus       147 ~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  211 (327)
T 3cv0_A          147 FFAAPNEYRECRTLLHAALE----MNPND-----------AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNK  211 (327)
T ss_dssp             CTTSHHHHHHHHHHHHHHHH----HSTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHh----hCCCC-----------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            58899999999999999998    45555           5789999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 015006          275 RGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  318 (414)
Q Consensus       275 ~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~  318 (414)
                      +|.++..+|++++|+..|+++++++|++ ..+...+..+.....
T Consensus       212 l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~g  254 (327)
T 3cv0_A          212 LGATLANGNRPQEALDAYNRALDINPGY-VRVMYNMAVSYSNMS  254 (327)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhc
Confidence            9999999999999999999999999997 567777777655444

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.91  E-value=6.3e-09  Score=81.33  Aligned_cols=99  Identities=17%  Similarity=0.114  Sum_probs=81.7

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHH
Q 015006          235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS--SEPDATAALSK  312 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~--n~~~~~~~l~~  312 (414)
                      ..++.++|.+++..++|.+|+..+.++++++|.+..+++.+|.++..+|++++|+..|+++++++|.  + ..+...+..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~l~~   84 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYN-KDVWAAKAD   84 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTC-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccch-HHHHHHHHH
Confidence            4577889999999999999999999999999999999999999999999999999999999999999  8 567777777


Q ss_pred             HHHHH-HHHHHHHHHHHHhhccCC
Q 015006          313 LKKQR-QEVESKARKQFKGLFDKK  335 (414)
Q Consensus       313 ~~~~~-~~~~~~~~~~~~~~~~~~  335 (414)
                      +.... .... +....+.......
T Consensus        85 ~~~~~~~~~~-~A~~~~~~~~~~~  107 (112)
T 2kck_A           85 ALRYIEGKEV-EAEIAEARAKLEH  107 (112)
T ss_dssp             HHTTCSSCSH-HHHHHHHHHGGGC
T ss_pred             HHHHHhCCHH-HHHHHHHHHhhcc
Confidence            66554 4332 2344445444443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.88  E-value=1e-08  Score=93.81  Aligned_cols=108  Identities=15%  Similarity=0.133  Sum_probs=93.6

Q ss_pred             HHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015006          184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  263 (414)
Q Consensus       184 ~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~  263 (414)
                      ..+..+...|..++..|+|.+|+..|.+++..+......+       ......++.|+|.++..+|+|++|+..+.+++.
T Consensus        83 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  155 (283)
T 3edt_B           83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF-------HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALE  155 (283)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC-------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3567788999999999999999999999999653321111       123467899999999999999999999999999


Q ss_pred             h--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006          264 A--------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  298 (414)
Q Consensus       264 ~--------dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l  298 (414)
                      +        .|..+.+++.+|.++..+|++++|+..|++++++
T Consensus       156 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          156 IYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             HHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            9        7888999999999999999999999999999987

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.87  E-value=1.3e-08  Score=86.50  Aligned_cols=99  Identities=13%  Similarity=0.192  Sum_probs=82.3

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015006          235 NLLHLNVAACLLKLGECRKSIEACNKVLDA------------------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM  296 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~------------------dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al  296 (414)
                      +..+.++|.++++.|+|.+|+..+.++|.+                  +|.++.+|+++|.||+.+|+|++|+.+|.+|+
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            567899999999999999999999999999                  88888999999999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 015006          297 KVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKK  335 (414)
Q Consensus       297 ~l~P~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  335 (414)
                      +++|++ ..+...+..+...+....+. ...+.+.+...
T Consensus        91 ~~~p~~-~~a~~~~g~~~~~~g~~~~A-~~~~~~al~l~  127 (162)
T 3rkv_A           91 KREETN-EKALFRRAKARIAAWKLDEA-EEDLKLLLRNH  127 (162)
T ss_dssp             HHSTTC-HHHHHHHHHHHHHTTCHHHH-HHHHHHHHHHC
T ss_pred             hcCCcc-hHHHHHHHHHHHHHhcHHHH-HHHHHHHHhcC
Confidence            999998 66777777776655544433 33444444433

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.86  E-value=1.3e-08  Score=85.86  Aligned_cols=98  Identities=14%  Similarity=0.104  Sum_probs=85.1

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +..+...|..++..|+|.+|+..|.+++.    ..|.+           ..++.++|.++..+|++++|+..+.+++.++
T Consensus        47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~----~~~~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~  111 (166)
T 1a17_A           47 AIYYGNRSLAYLRTECYGYALGDATRAIE----LDKKY-----------IKGYYRRAASNMALGKFRAALRDYETVVKVK  111 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCccc-----------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            45567788899999999999999999999    55655           5689999999999999999999999999999


Q ss_pred             CCcHHHHHH--HHHHHHHcCCHHHHHHHHHHHHhh
Q 015006          266 PAHVKGLYR--RGMAYMALGEFEEAQRDFEMMMKV  298 (414)
Q Consensus       266 p~~~ka~~r--~g~a~~~l~~~~eA~~~~~~al~l  298 (414)
                      |.+..++..  ++..+..+|++++|+..+.++..+
T Consensus       112 p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A          112 PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence            999988844  555588889999999999887654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.86  E-value=1.5e-08  Score=84.25  Aligned_cols=108  Identities=19%  Similarity=0.202  Sum_probs=92.2

Q ss_pred             hHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015006          183 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  262 (414)
Q Consensus       183 ~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al  262 (414)
                      ...+..+...|..++..|+|.+|+..|.+++.......  +       ......++.++|.++..+|+|++|+..+.+++
T Consensus         6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~   76 (164)
T 3ro3_A            6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--D-------KAAERIAYSNLGNAYIFLGEFETASEYYKKTL   76 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--C-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhC--C-------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34678889999999999999999999999998654321  1       12335689999999999999999999999999


Q ss_pred             HhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015006          263 DANPAH------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  299 (414)
Q Consensus       263 ~~dp~~------~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~  299 (414)
                      .+.+..      ..+++++|.++..+|++++|+..|++++++.
T Consensus        77 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  119 (164)
T 3ro3_A           77 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA  119 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            876543      7789999999999999999999999999874

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.85  E-value=2.7e-08  Score=101.99  Aligned_cols=115  Identities=14%  Similarity=0.097  Sum_probs=91.2

Q ss_pred             HHHhhhccccccccHHHHHHHHHHHHhhcccC--CCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          188 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV--NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       188 ~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~--~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      .+...|..+++.|++++|+..|.+++......  .|.          ....++.+++.++.+.|++++|+..++++++++
T Consensus       477 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  546 (597)
T 2xpi_A          477 LLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEK----------PWAATWANLGHAYRKLKMYDAAIDALNQGLLLS  546 (597)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSG----------GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchh----------hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            34555666666666666666666666532211  111          125689999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 015006          266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  313 (414)
Q Consensus       266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~  313 (414)
                      |+++.+++.+|.+|..+|++++|+..|+++++++|++ ..+...|..+
T Consensus       547 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~  593 (597)
T 2xpi_A          547 TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNE-IMASDLLKRA  593 (597)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHT
T ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC-hHHHHHHHHH
Confidence            9999999999999999999999999999999999998 5666666544

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.85  E-value=1.1e-08  Score=102.42  Aligned_cols=77  Identities=12%  Similarity=0.108  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 015006          237 LHLNVAACLLK---LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  313 (414)
Q Consensus       237 ~~~N~a~~~~k---l~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~  313 (414)
                      ++.++|.++..   +|++++|+..+.+++.++|+++.+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+
T Consensus       414 ~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~  492 (514)
T 2gw1_A          414 PLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM-EEKLQAITFA  492 (514)
T ss_dssp             HHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSH-HHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcccc-HHHHHHHHHH
Confidence            89999999999   9999999999999999999999999999999999999999999999999999997 5666655444


Q ss_pred             H
Q 015006          314 K  314 (414)
Q Consensus       314 ~  314 (414)
                      .
T Consensus       493 ~  493 (514)
T 2gw1_A          493 E  493 (514)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.84  E-value=3.3e-08  Score=98.44  Aligned_cols=122  Identities=11%  Similarity=0.101  Sum_probs=96.8

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +..+...-..+.++|+|.+|+..|.++|......-+.+       +.....++.|+|.+|..+|+|++|+..+.++|.+.
T Consensus       287 ~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~-------h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~  359 (429)
T 3qwp_A          287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDI-------NIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPY  359 (429)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTT-------SHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCcc-------chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhH
Confidence            34444555567788999999999999998765544444       44567899999999999999999999999999763


Q ss_pred             --------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHH
Q 015006          266 --------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV-----DKSSEPDATAALSKLKK  315 (414)
Q Consensus       266 --------p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l-----~P~n~~~~~~~l~~~~~  315 (414)
                              |.-+..++++|.+|..+|++++|+..|++|+++     -|++ +.+...+..+..
T Consensus       360 ~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~H-p~~~~~~~~l~~  421 (429)
T 3qwp_A          360 RIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREH-SLIEDLILLLEE  421 (429)
T ss_dssp             HHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS-HHHHHHHHHHHH
T ss_pred             HHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHH
Confidence                    445778999999999999999999999999986     5666 445544444433

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.84  E-value=7.6e-09  Score=97.12  Aligned_cols=107  Identities=14%  Similarity=0.123  Sum_probs=89.9

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      .+..+...|..++..|+|.+|+..|.+|+.++... +.+.       .....+++|+|.+|.++|+|++|+.++.+++.+
T Consensus       154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~-~~~~-------~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~  225 (293)
T 2qfc_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL-HDNE-------EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI  225 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-CCCH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-Cccc-------cchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            46788899999999999999999999999765432 2221       122368999999999999999999999999988


Q ss_pred             CCC------cHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhhC
Q 015006          265 NPA------HVKGLYRRGMAYMALGEFEEA-QRDFEMMMKVD  299 (414)
Q Consensus       265 dp~------~~ka~~r~g~a~~~l~~~~eA-~~~~~~al~l~  299 (414)
                      .+.      .+.+++++|.++..+|++++| ...|++|+.+.
T Consensus       226 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            643      278999999999999999999 77899999774

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens}

Probab=98.84  E-value=2.5e-09  Score=87.86  Aligned_cols=46  Identities=13%  Similarity=0.143  Sum_probs=43.0

Q ss_pred             ccccCCcCcEEEEEEcCCCcCCCCCCCCCCCCCeeeEEEEeeEEEe
Q 015006            2 GIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQ   47 (414)
Q Consensus         2 ~~~~m~~Ge~~~~~i~~~~~~g~~~~~~ip~~~~l~~~vel~~~~~   47 (414)
                      ||.+|++||++.|.|||++|||..+.+.||||++|+|+|+|+++.+
T Consensus        78 ~l~gm~~Ge~~~~~ip~~~aYG~~g~~~Ip~~~~l~f~vel~~i~~  123 (125)
T 4dip_A           78 GLKGMCVGEKRKLIIPPALGYGKEGKGKIPPESTLIFNIDLLEIRN  123 (125)
T ss_dssp             HSTTCCTTCEEEEEECGGGTTTTTCBTTBCTTCCEEEEEEEEEEEC
T ss_pred             HHhCCCCCCEEEEEEChHHhcCCCCCCCCCCCCeEEEEEEEEEEEc
Confidence            7899999999999999999999977779999999999999999753

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A

Probab=98.84  E-value=2.2e-09  Score=90.44  Aligned_cols=45  Identities=24%  Similarity=0.463  Sum_probs=41.8

Q ss_pred             ccccCCcCcEEEEEEcCCCcCCCC-CCCCCCCCCeeeEEEEeeEEE
Q 015006            2 GIGTMTREEKAVIYVTSQYLTPSP-LMPVVEGCEEVHFEVELVHLI   46 (414)
Q Consensus         2 ~~~~m~~Ge~~~~~i~~~~~~g~~-~~~~ip~~~~l~~~vel~~~~   46 (414)
                      ||.+|++||++.|.|||++|||.. .++.||||++|+|+|+|+++.
T Consensus        97 ~l~gm~~Ge~~~v~ipp~~aYG~~g~~~~Ipp~~~L~f~VeL~~ik  142 (144)
T 3o5e_A           97 GVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFK  142 (144)
T ss_dssp             HHTTCCBTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             HHhCCCCCCEEEEEEChHHCcCCCCCCCCcCCCCeEEEEEEEEEec
Confidence            689999999999999999999985 458999999999999999985

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.84  E-value=1.4e-08  Score=95.22  Aligned_cols=124  Identities=14%  Similarity=0.104  Sum_probs=96.0

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA-  264 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~-  264 (414)
                      +.-+...|..++..++|.+|+..|.+|+.......  +       ......+++|+|.+|..+|+|++|+.++.+|+++ 
T Consensus       115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~--~-------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  185 (293)
T 3u3w_A          115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI--D-------VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQL  185 (293)
T ss_dssp             HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCS--C-------TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccc--c-------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            44555688888999999999999999998432211  1       0123568999999999999999999999999952 


Q ss_pred             ------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHHHH
Q 015006          265 ------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS-----EPDATAALSKLKKQRQ  318 (414)
Q Consensus       265 ------dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n-----~~~~~~~l~~~~~~~~  318 (414)
                            .+..+.+++++|.+|..+|+|++|+..|++|+++.+..     ...+...+..+...+.
T Consensus       186 ~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g  250 (293)
T 3u3w_A          186 EALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLE  250 (293)
T ss_dssp             HHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTT
T ss_pred             HhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhC
Confidence                  23446799999999999999999999999999986432     1456666666665554

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.84  E-value=6.5e-08  Score=76.00  Aligned_cols=99  Identities=11%  Similarity=0.135  Sum_probs=82.1

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                      ...++++|.+++..++|++|+..+.+++..+|.++.+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~   82 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW-GKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc-HHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999997 66777777766


Q ss_pred             HHHHHHHHHHHHHHHhhccCC
Q 015006          315 KQRQEVESKARKQFKGLFDKK  335 (414)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~  335 (414)
                      .......+ ....+.+.....
T Consensus        83 ~~~~~~~~-A~~~~~~~~~~~  102 (118)
T 1elw_A           83 EFLNRFEE-AKRTYEEGLKHE  102 (118)
T ss_dssp             HHTTCHHH-HHHHHHHHHTTC
T ss_pred             HHHhhHHH-HHHHHHHHHHcC
Confidence            55443332 344455554443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.83  E-value=1e-08  Score=99.67  Aligned_cols=109  Identities=14%  Similarity=0.073  Sum_probs=96.0

Q ss_pred             HHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015006          184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  263 (414)
Q Consensus       184 ~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~  263 (414)
                      ..+..+...|..++..|+|.+|+..|.+|+.......  +       ......++.|+|.||..+|+|++|+.++.+++.
T Consensus       180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~--~-------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~  250 (378)
T 3q15_A          180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ--N-------DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK  250 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--C-------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC--C-------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            4577888999999999999999999999999654331  1       123467899999999999999999999999999


Q ss_pred             -----hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015006          264 -----ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  301 (414)
Q Consensus       264 -----~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~  301 (414)
                           .+|..+.+++.+|.++..+|++++|+..|++|+++.+.
T Consensus       251 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          251 VSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             HHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred             HHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence                 78888999999999999999999999999999998553

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.82  E-value=2.1e-08  Score=97.46  Aligned_cols=125  Identities=15%  Similarity=0.151  Sum_probs=96.4

Q ss_pred             hHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015006          183 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  262 (414)
Q Consensus       183 ~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al  262 (414)
                      ...+..+...|..++..|+|..|+..|.+|+.++..... .       ......+++|+|.+|..+|+|++|+.++.+|+
T Consensus       140 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~-~-------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  211 (383)
T 3ulq_A          140 IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA-Y-------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAY  211 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST-T-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc-c-------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            345778889999999999999999999999997654321 1       12235788999999999999999999999999


Q ss_pred             HhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----C-CCCHHHHHHHHHHHHHH
Q 015006          263 DANPAH------VKGLYRRGMAYMALGEFEEAQRDFEMMMKV-----D-KSSEPDATAALSKLKKQ  316 (414)
Q Consensus       263 ~~dp~~------~ka~~r~g~a~~~l~~~~eA~~~~~~al~l-----~-P~n~~~~~~~l~~~~~~  316 (414)
                      ++.+..      +.+++++|.++..+|++++|+..|++|+++     + |.. ..+...+..+...
T Consensus       212 ~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~l~~~~~~  276 (383)
T 3ulq_A          212 SMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL-PQAYFLITQIHYK  276 (383)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH-HHHHHHHHHHHHH
T ss_pred             HHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH-HHHHHHHHHHHHH
Confidence            875433      358999999999999999999999999984     4 443 4555555555443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.82  E-value=1.1e-08  Score=97.01  Aligned_cols=107  Identities=10%  Similarity=0.033  Sum_probs=89.2

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      .+..+...|..+.. |+|.+|+..|.+|+.+.....  +       ......++.|+|.+|.++|+|++|+.++.+++.+
T Consensus       115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~--~-------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  184 (307)
T 2ifu_A          115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEE--R-------LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM  184 (307)
T ss_dssp             HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTT--C-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCC--C-------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            46677788888888 999999999999998654211  1       1123578999999999999999999999999998


Q ss_pred             CCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          265 NPAH------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       265 dp~~------~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      .|.+      ..+++.+|.++..+|++++|+..|++++ ++|.+
T Consensus       185 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~  227 (307)
T 2ifu_A          185 YKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF  227 (307)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred             HHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC
Confidence            7643      4588999999999999999999999999 99975

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.82  E-value=2.4e-08  Score=97.34  Aligned_cols=104  Identities=16%  Similarity=0.241  Sum_probs=93.6

Q ss_pred             HHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015006          184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  263 (414)
Q Consensus       184 ~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~  263 (414)
                      ..+..+...|..++..|+|.+|+..|.+++.    ..|.+.       .....++.++|.+|+.+|+|++|+..+.+++.
T Consensus        46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~----~~~~~~-------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  114 (411)
T 4a1s_A           46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQ----AGTEDL-------RTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLT  114 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCSCH-------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH----hcccCh-------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            4577888999999999999999999999999    455552       23356899999999999999999999999999


Q ss_pred             h------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006          264 A------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  298 (414)
Q Consensus       264 ~------dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l  298 (414)
                      +      +|..+.+++.+|.++..+|++++|+..|++++++
T Consensus       115 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  155 (411)
T 4a1s_A          115 LAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTL  155 (411)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            8      6788999999999999999999999999999998

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens}

Probab=98.81  E-value=4.5e-09  Score=89.57  Aligned_cols=47  Identities=19%  Similarity=0.244  Sum_probs=42.6

Q ss_pred             ccccCCcCcEEEEEEcCCCcCCCCC--CCCCCCCCeeeEEEEeeEEEee
Q 015006            2 GIGTMTREEKAVIYVTSQYLTPSPL--MPVVEGCEEVHFEVELVHLIQV   48 (414)
Q Consensus         2 ~~~~m~~Ge~~~~~i~~~~~~g~~~--~~~ip~~~~l~~~vel~~~~~~   48 (414)
                      ||.+|++||++.|.|||++|||..+  ++.||||++|+|+|+|+++...
T Consensus       102 aL~gMk~Ge~~~v~IP~~~aYG~~g~~~~~IPp~stLiF~VeL~~i~~~  150 (157)
T 2jwx_A          102 SVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDL  150 (157)
T ss_dssp             HTTTSCTTCEEEEEECGGGTTTTTCCSSSCCCTTCCEEEEEEEEEEEEC
T ss_pred             HHcCCCCCCEEEEEECchhcCCcccccCCCcCCCCeEEEEEEEEEEEcc
Confidence            7899999999999999999999855  4789999999999999998653

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.80  E-value=2.6e-08  Score=96.83  Aligned_cols=108  Identities=10%  Similarity=0.103  Sum_probs=94.5

Q ss_pred             HHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015006          184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  263 (414)
Q Consensus       184 ~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~  263 (414)
                      ..+..+...|..+...|+|.+|+..|.+|+.......  +       ......++.|+|.||..+|+|++|+.++.+|++
T Consensus       182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~-------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  252 (383)
T 3ulq_A          182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK--Q-------PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA  252 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--C-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC--C-------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3577888999999999999999999999999655331  1       223467899999999999999999999999999


Q ss_pred             -----hC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 015006          264 -----AN-PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK  300 (414)
Q Consensus       264 -----~d-p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P  300 (414)
                           .+ |..+.+++++|.++..+|++++|+..|++|+++.+
T Consensus       253 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  295 (383)
T 3ulq_A          253 VFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ  295 (383)
T ss_dssp             HHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence                 46 88899999999999999999999999999999843

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.80  E-value=9.2e-09  Score=97.43  Aligned_cols=109  Identities=10%  Similarity=0.021  Sum_probs=91.2

Q ss_pred             HHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015006          184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  263 (414)
Q Consensus       184 ~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~  263 (414)
                      ..+..+.+.|+.+...|+|.+|+..|.+|+.+.....  +       ......++.|+|.+|.. ++|++|+.++.+|+.
T Consensus        74 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g--~-------~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~  143 (307)
T 2ifu_A           74 HAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG--T-------PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAA  143 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT--C-------HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC--C-------HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Confidence            3466788889999999999999999999998654221  1       11235689999999999 999999999999999


Q ss_pred             hCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          264 ANPAH------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       264 ~dp~~------~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      +.|..      ..+++++|.++..+|+|++|+..|++++++.|.+
T Consensus       144 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  188 (307)
T 2ifu_A          144 VFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM  188 (307)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence            87643      6899999999999999999999999999997644

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=98.79  E-value=3.7e-09  Score=83.58  Aligned_cols=47  Identities=26%  Similarity=0.304  Sum_probs=42.2

Q ss_pred             CccccCCcCcEEEEEEcCCCcCCCCC-CCCCCCCCeeeEEEEeeEEEe
Q 015006            1 MGIGTMTREEKAVIYVTSQYLTPSPL-MPVVEGCEEVHFEVELVHLIQ   47 (414)
Q Consensus         1 ~~~~~m~~Ge~~~~~i~~~~~~g~~~-~~~ip~~~~l~~~vel~~~~~   47 (414)
                      .||.+|++||++.|.|||++|||..+ ++.||||++|+|+|+|+++.+
T Consensus        51 ~~l~gm~~Ge~~~v~ip~~~ayG~~~~~~~Ip~~~~l~f~v~l~~v~~   98 (102)
T 2pbc_A           51 QGLLGMCEGEKRKLVIPSELGYGERGAPPKIPGGATLVFEVELLKIER   98 (102)
T ss_dssp             TTSTTCCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEGG
T ss_pred             HHHhCCCCCCEEEEEECHHHCcCCCCCCCCcCcCCeEEEEEEEEEecc
Confidence            37899999999999999999999854 568999999999999999754

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.78  E-value=2.4e-08  Score=92.87  Aligned_cols=110  Identities=23%  Similarity=0.295  Sum_probs=93.1

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      .+..+...|..++..|+|.+|+..|.+++..+......+       ......++.++|.++..+|++++|+..+.+++.+
T Consensus       152 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  224 (311)
T 3nf1_A          152 VAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPD-------DPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR  224 (311)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTT-------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            456677889999999999999999999999654432222       1223678999999999999999999999999974


Q ss_pred             -------------------------------------------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015006          265 -------------------------------------------------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMM  295 (414)
Q Consensus       265 -------------------------------------------------dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~a  295 (414)
                                                                       .|..+.+++.+|.+|..+|++++|+..|++|
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  304 (311)
T 3nf1_A          225 AHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAA  304 (311)
T ss_dssp             HHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence                                                             4667899999999999999999999999999


Q ss_pred             HhhCCC
Q 015006          296 MKVDKS  301 (414)
Q Consensus       296 l~l~P~  301 (414)
                      +++.|.
T Consensus       305 l~l~~~  310 (311)
T 3nf1_A          305 MRSRKQ  310 (311)
T ss_dssp             HHHHC-
T ss_pred             HHHhhc
Confidence            999875

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A

Probab=98.78  E-value=5e-09  Score=86.46  Aligned_cols=45  Identities=24%  Similarity=0.463  Sum_probs=41.6

Q ss_pred             ccccCCcCcEEEEEEcCCCcCCCC-CCCCCCCCCeeeEEEEeeEEE
Q 015006            2 GIGTMTREEKAVIYVTSQYLTPSP-LMPVVEGCEEVHFEVELVHLI   46 (414)
Q Consensus         2 ~~~~m~~Ge~~~~~i~~~~~~g~~-~~~~ip~~~~l~~~vel~~~~   46 (414)
                      ||.+|++||++.|.|||++|||.. .++.||||++|+|+|+|+++.
T Consensus        81 ~l~gm~~Ge~~~v~ip~~~aYG~~g~~~~Ip~~~~l~f~vel~~i~  126 (128)
T 3o5q_A           81 GVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFK  126 (128)
T ss_dssp             HHTTCCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             HHhcCCCCCEEEEEEChHHcCCCCCCCCCcCCCCEEEEEEEEEEec
Confidence            689999999999999999999985 457999999999999999985

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.77  E-value=6.5e-08  Score=78.02  Aligned_cols=84  Identities=17%  Similarity=0.234  Sum_probs=76.4

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                      ...+.++|.+++..++|.+|+..+.+++..+|.+..+++.+|.++..+|++++|+..|+++++++|.+ ..+...+..+.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~   94 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF-IKGYTRKAAAL   94 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc-hHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999997 66777777766


Q ss_pred             HHHHH
Q 015006          315 KQRQE  319 (414)
Q Consensus       315 ~~~~~  319 (414)
                      .....
T Consensus        95 ~~~~~   99 (133)
T 2lni_A           95 EAMKD   99 (133)
T ss_dssp             HHTTC
T ss_pred             HHHhh
Confidence            55443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.77  E-value=7.3e-08  Score=77.80  Aligned_cols=99  Identities=20%  Similarity=0.251  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHH
Q 015006          237 LHLNVAACLLKLGECRKSIEACNKVLDANPAHV---KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE--PDATAALS  311 (414)
Q Consensus       237 ~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~---ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~--~~~~~~l~  311 (414)
                      .++++|.+++..|+|.+|+..+.+++..+|+++   .+++.+|.++..+|+|++|+..|+++++++|++.  ..+...+.
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la   83 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG   83 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence            567899999999999999999999999999998   8999999999999999999999999999999873  34555666


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCC
Q 015006          312 KLKKQRQEVESKARKQFKGLFDKKP  336 (414)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~  336 (414)
                      .+........ +....+.......+
T Consensus        84 ~~~~~~g~~~-~A~~~~~~~~~~~p  107 (129)
T 2xev_A           84 LSQYGEGKNT-EAQQTLQQVATQYP  107 (129)
T ss_dssp             HHHHHTTCHH-HHHHHHHHHHHHST
T ss_pred             HHHHHcCCHH-HHHHHHHHHHHHCC
Confidence            6654433322 33445555554443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.76  E-value=1.1e-07  Score=89.12  Aligned_cols=121  Identities=13%  Similarity=0.080  Sum_probs=91.4

Q ss_pred             HHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH---Hh
Q 015006          188 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL---DA  264 (414)
Q Consensus       188 ~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al---~~  264 (414)
                      .+...|..+...|+|.+|+..|.+|+.........         .....+++|+|.+|..+|+|++|+.++.+|+   +.
T Consensus       117 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~  187 (293)
T 2qfc_A          117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV---------YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEA  187 (293)
T ss_dssp             HHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT---------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch---------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence            34456777788889999999999998754321111         1135689999999999999999999999999   44


Q ss_pred             CCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHHH
Q 015006          265 NPAH----VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS-----EPDATAALSKLKKQR  317 (414)
Q Consensus       265 dp~~----~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n-----~~~~~~~l~~~~~~~  317 (414)
                      .|++    +.+++++|.+|..+|+|++|+..|++|+++.+..     ...+...+..+...+
T Consensus       188 ~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~  249 (293)
T 2qfc_A          188 LHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKL  249 (293)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHT
T ss_pred             cCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc
Confidence            5553    3799999999999999999999999999885421     134555555555444

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens}

Probab=98.76  E-value=3.6e-09  Score=88.05  Aligned_cols=45  Identities=27%  Similarity=0.389  Sum_probs=41.0

Q ss_pred             ccccCCcCcEEEEEEcCCCcCCCCC-CCCCCCCCeeeEEEEeeEEE
Q 015006            2 GIGTMTREEKAVIYVTSQYLTPSPL-MPVVEGCEEVHFEVELVHLI   46 (414)
Q Consensus         2 ~~~~m~~Ge~~~~~i~~~~~~g~~~-~~~ip~~~~l~~~vel~~~~   46 (414)
                      ||.+|++||++.|.|||++|||..+ ++.||||++|+|+|+|+++.
T Consensus        88 aL~gm~~Ge~~~v~ip~~~aYG~~~~~~~Ip~~~~l~f~VeL~~i~  133 (134)
T 3b7x_A           88 GLLSMRRGELARFLFKPNYAYGTLGCPPLIPPNTTVLFEIELLDFL  133 (134)
T ss_dssp             HHHTCEETCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEC
T ss_pred             HHhCCCCCCEEEEEECHHHCcCCCCCCCCcCcCCeEEEEEEEEEEe
Confidence            6889999999999999999999854 56799999999999999874

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.76  E-value=2.1e-08  Score=99.76  Aligned_cols=119  Identities=11%  Similarity=0.036  Sum_probs=95.8

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcC--CHHHHHHHHHHHHH
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG--ECRKSIEACNKVLD  263 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~--~~~~A~~~~~~al~  263 (414)
                      +..+.+.|..++..|+|.+|+..|.+++.+........       ......++.|+|.++++++  +|++|+.++.+|++
T Consensus        94 ~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~-------~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~  166 (472)
T 4g1t_A           94 LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY-------RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALE  166 (472)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS-------CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc-------chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHH
Confidence            45667889999999999999999999998655432211       1122568889998888765  69999999999999


Q ss_pred             hCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 015006          264 ANPAHVKGLYRRGMAYMA---LGEFEEAQRDFEMMMKVDKSSEPDATAALSK  312 (414)
Q Consensus       264 ~dp~~~ka~~r~g~a~~~---l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~  312 (414)
                      ++|+++.+++.+|.++..   .+++++|+..|++|++++|++ ..+...+..
T Consensus       167 ~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~-~~~~~~l~~  217 (472)
T 4g1t_A          167 KKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN-QYLKVLLAL  217 (472)
T ss_dssp             HSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC-HHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc-hHHHHHHHH
Confidence            999999999999998655   577789999999999999998 556655543

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.76  E-value=4.7e-09  Score=106.12  Aligned_cols=102  Identities=14%  Similarity=0.121  Sum_probs=89.3

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +..+...|..+++.|+|.+|+..|++|+.    +.|.+           ..+++|+|.+|.++|+|++|+..+.++++++
T Consensus        40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~----l~p~~-----------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~  104 (477)
T 1wao_1           40 AIYYGNRSLAYLRTECYGYALGDATRAIE----LDKKY-----------IKGYYRRAASNMALGKFRAALRDYETVVKVK  104 (477)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----SCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            56678899999999999999999999999    67776           6799999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHhhCCCC
Q 015006          266 PAHVKGLYRRGMA--YMALGEFEEAQRDFE-----------MMMKVDKSS  302 (414)
Q Consensus       266 p~~~ka~~r~g~a--~~~l~~~~eA~~~~~-----------~al~l~P~n  302 (414)
                      |++..+++.++.+  +..+|++++|++.++           +++.++|+.
T Consensus       105 p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1          105 PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence            9999999999999  888999999999999           888887754

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.76  E-value=6.9e-08  Score=98.93  Aligned_cols=115  Identities=17%  Similarity=0.099  Sum_probs=92.9

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +..+...|..+++.|++.+|+..|.+++.    ..|.+           ..++++++.+|.+.|++++|+..+.+++...
T Consensus       373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  437 (597)
T 2xpi_A          373 AVTWLAVGIYYLCVNKISEARRYFSKSST----MDPQF-----------GPAWIGFAHSFAIEGEHDQAISAYTTAARLF  437 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            33455677778888888888888888887    45554           5678889999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 015006          266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  316 (414)
Q Consensus       266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~  316 (414)
                      |.++.+++.+|.++...|++++|+..|+++++++|.+ ..+...+..+...
T Consensus       438 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~  487 (597)
T 2xpi_A          438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD-PLLLNELGVVAFN  487 (597)
T ss_dssp             TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999887 5566555555443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.75  E-value=2.7e-08  Score=82.60  Aligned_cols=108  Identities=22%  Similarity=0.244  Sum_probs=91.0

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      .+..+...|..++..|+|.+|+..|.+++.......  +       ......++.|+|.++..+++|++|+..+.+++.+
T Consensus        48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~--~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  118 (164)
T 3ro3_A           48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK--D-------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI  118 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--C-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC--C-------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            456778899999999999999999999999654332  1       1233668999999999999999999999999977


Q ss_pred             CC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015006          265 NP------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  301 (414)
Q Consensus       265 dp------~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~  301 (414)
                      .+      ..+.+++.+|.++..+|++++|+..|++++++...
T Consensus       119 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          119 AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            42      23678999999999999999999999999988544

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A

Probab=98.75  E-value=6.3e-09  Score=85.97  Aligned_cols=46  Identities=22%  Similarity=0.353  Sum_probs=41.8

Q ss_pred             ccccCCcCcEEEEEEcCCCcCCCC-CCCCCCCCCeeeEEEEeeEEEe
Q 015006            2 GIGTMTREEKAVIYVTSQYLTPSP-LMPVVEGCEEVHFEVELVHLIQ   47 (414)
Q Consensus         2 ~~~~m~~Ge~~~~~i~~~~~~g~~-~~~~ip~~~~l~~~vel~~~~~   47 (414)
                      ||.+|++||++.|.|||++|||.. .++.||||++|+|+|+|+++..
T Consensus        81 ~l~gm~~Ge~~~v~ip~~~aYG~~~~~~~Ip~~~~l~f~vel~~v~~  127 (129)
T 2vn1_A           81 CVSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSFRE  127 (129)
T ss_dssp             HHTTCCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC
T ss_pred             HHhCCCCCCEEEEEEChHHcCCCCCCCCCcCCCCeEEEEEEEEEEec
Confidence            689999999999999999999985 4578999999999999999863

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A

Probab=98.75  E-value=7.3e-09  Score=84.20  Aligned_cols=45  Identities=20%  Similarity=0.235  Sum_probs=41.1

Q ss_pred             ccccCCcCcEEEEEEcCCCcCCCCC-CCCCCCCCeeeEEEEeeEEE
Q 015006            2 GIGTMTREEKAVIYVTSQYLTPSPL-MPVVEGCEEVHFEVELVHLI   46 (414)
Q Consensus         2 ~~~~m~~Ge~~~~~i~~~~~~g~~~-~~~ip~~~~l~~~vel~~~~   46 (414)
                      ||.+|++||++.|.|||++|||..+ ++.||||++|+|+|+|+++.
T Consensus        72 ~l~gm~~Ge~~~~~ip~~~ayG~~~~~~~Ip~~~~l~f~v~l~~v~  117 (118)
T 2awg_A           72 SVPLMDVGETAMVTADSKYCYGPQGRSPYIPPHAALCLEVTLKTAV  117 (118)
T ss_dssp             HGGGSCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             HHhCCCCCCEEEEEEChHHccCCCCCCCccCCCCeEEEEEEEEEec
Confidence            6899999999999999999999854 57899999999999999864

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.75  E-value=3.9e-08  Score=91.83  Aligned_cols=105  Identities=18%  Similarity=0.254  Sum_probs=91.8

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA-  264 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~-  264 (414)
                      +..+...|..++..|+|.+|+..|.+++.    ..|.+.       .....++.++|.+++.+|+|++|+..+.+++.+ 
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~----~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~   73 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQ----VGTEDL-------KTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA   73 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCSCH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHh----hCcccH-------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            45677889999999999999999999999    455552       233568999999999999999999999999987 


Q ss_pred             -----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015006          265 -----NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  301 (414)
Q Consensus       265 -----dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~  301 (414)
                           .|..+.+++.+|.++..+|++++|+..|++++++.|.
T Consensus        74 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  115 (338)
T 3ro2_A           74 RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE  115 (338)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence                 5566889999999999999999999999999998653

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A*

Probab=98.75  E-value=5.6e-09  Score=84.98  Aligned_cols=44  Identities=27%  Similarity=0.372  Sum_probs=40.2

Q ss_pred             ccccCCcCcEEEEEEcCCCcCCCCCCC--CCCCCCeeeEEEEeeEE
Q 015006            2 GIGTMTREEKAVIYVTSQYLTPSPLMP--VVEGCEEVHFEVELVHL   45 (414)
Q Consensus         2 ~~~~m~~Ge~~~~~i~~~~~~g~~~~~--~ip~~~~l~~~vel~~~   45 (414)
                      ||.+|++||++.|.|||++|||..+.+  .||||++|+|+|+|+++
T Consensus        73 ~l~gm~~Ge~~~v~ip~~~aYG~~g~~~~~Ip~~~~l~f~veL~~i  118 (119)
T 3kz7_A           73 ALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELVDI  118 (119)
T ss_dssp             HHTTCCTTCEEEEEECGGGTTCTTCBGGGTBCTTCCEEEEEEEEEE
T ss_pred             HHhCCCCCCEEEEEECcHHhcCCCCCCCCccCcCCeEEEEEEEEEe
Confidence            689999999999999999999996543  79999999999999985

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.75  E-value=3.1e-08  Score=92.04  Aligned_cols=125  Identities=15%  Similarity=0.180  Sum_probs=99.7

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      .+..+...|..++..|+|.+|+..|.+++.........+       ......++.++|.++..+|+|++|+..+.+++.+
T Consensus        68 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  140 (311)
T 3nf1_A           68 VATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD-------HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI  140 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC-------ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence            466778899999999999999999999998653221111       1234678999999999999999999999999987


Q ss_pred             C--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHHH
Q 015006          265 N--------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV--------DKSSEPDATAALSKLKKQR  317 (414)
Q Consensus       265 d--------p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l--------~P~n~~~~~~~l~~~~~~~  317 (414)
                      .        |....+++.+|.++..+|++++|+..|++++++        .|.. ..+...+..+....
T Consensus       141 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~la~~~~~~  208 (311)
T 3nf1_A          141 REKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNV-AKTKNNLASCYLKQ  208 (311)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHH-HHHHHHHHHHHHHH
T ss_pred             HHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHHHHc
Confidence            4        667889999999999999999999999999998        4432 34455555554433

>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A

Probab=98.74  E-value=5.3e-09  Score=102.64  Aligned_cols=85  Identities=14%  Similarity=0.203  Sum_probs=70.4

Q ss_pred             CCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCCeEEEEecCCCccccCCCCCCC
Q 015006           74 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANV  153 (414)
Q Consensus        74 p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~~i  153 (414)
                      +..||.|+|||+|+.   +|+.| +++   .+.|+.|.+|.|.+++||+.+|.+|++||+..|.++....|+..+.    
T Consensus       161 ~~~gD~V~i~y~g~~---dG~~f-d~~---~~~~~~~~lG~g~~ipgfee~L~Gmk~Ge~~~v~v~fp~dy~~~~l----  229 (392)
T 1t11_A          161 AENGKRVSIDFVGSI---DGVEF-EGG---KAENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAENL----  229 (392)
T ss_dssp             CCTTCEEEEEEEEES---SSSCC-TTC---EEEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTTT----
T ss_pred             CCCCCEEEEEEEEEE---CCEEc-cCC---CccceEEEecCCCcchhHHHHhCCCCCCCEEEEEEeCccccccCCC----
Confidence            468999999999994   48888 444   2569999999999999999999999999999999963345665432    


Q ss_pred             CCCcceEEEEEEcccCC
Q 015006          154 PEGAHIQWEIELLGFEK  170 (414)
Q Consensus       154 p~~~~l~~eieL~~~~~  170 (414)
                       +|.++.|+|+|+++..
T Consensus       230 -aGk~~~F~V~v~~i~~  245 (392)
T 1t11_A          230 -KGKAAKFAIKVNKVEA  245 (392)
T ss_dssp             -SSCEEEECCCEEEEEE
T ss_pred             -CCCeEEEEEEEEEEEc
Confidence             6789999999998865

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1

Probab=98.74  E-value=7.5e-09  Score=83.42  Aligned_cols=44  Identities=23%  Similarity=0.320  Sum_probs=40.5

Q ss_pred             ccccCCcCcEEEEEEcCCCcCCCCC-CCCCCCCCeeeEEEEeeEE
Q 015006            2 GIGTMTREEKAVIYVTSQYLTPSPL-MPVVEGCEEVHFEVELVHL   45 (414)
Q Consensus         2 ~~~~m~~Ge~~~~~i~~~~~~g~~~-~~~ip~~~~l~~~vel~~~   45 (414)
                      ||.+|++||++.|.|||++|||..+ ++.||||++|+|+|+|+++
T Consensus        68 ~l~gm~~Ge~~~v~ip~~~ayG~~~~~~~Ip~~~~l~f~vel~~i  112 (113)
T 1yat_A           68 GIPKLSVGEKARLTIPGPYAYGPRGFPGLIPPNSTLVFDVELLKV  112 (113)
T ss_dssp             HGGGCCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEE
T ss_pred             HHhCCCCCCEEEEEECHHHCcCCCCCCCCcCCCCeEEEEEEEEEe
Confidence            6899999999999999999999854 5679999999999999986

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...

Probab=98.73  E-value=7.9e-09  Score=82.41  Aligned_cols=44  Identities=20%  Similarity=0.385  Sum_probs=40.4

Q ss_pred             ccccCCcCcEEEEEEcCCCcCCCCC-CCCCCCCCeeeEEEEeeEE
Q 015006            2 GIGTMTREEKAVIYVTSQYLTPSPL-MPVVEGCEEVHFEVELVHL   45 (414)
Q Consensus         2 ~~~~m~~Ge~~~~~i~~~~~~g~~~-~~~ip~~~~l~~~vel~~~   45 (414)
                      ||.+|++||++.|.|||++|||..+ ++.||||++|+|+|+|+++
T Consensus        62 ~l~gm~~Ge~~~~~ip~~~ayG~~~~~~~Ip~~~~l~f~v~l~~v  106 (107)
T 2ppn_A           62 GVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKL  106 (107)
T ss_dssp             HHTTCCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEE
T ss_pred             HHhCCCCCCEEEEEECHHHccCCCCCCCCcCCCCeEEEEEEEEEe
Confidence            6899999999999999999999854 5789999999999999885

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1

Probab=98.72  E-value=9.1e-09  Score=88.63  Aligned_cols=45  Identities=11%  Similarity=0.208  Sum_probs=41.6

Q ss_pred             ccccCCcCcEEEEEEcCCCcCCCCC-CCCCCCCCeeeEEEEeeEEE
Q 015006            2 GIGTMTREEKAVIYVTSQYLTPSPL-MPVVEGCEEVHFEVELVHLI   46 (414)
Q Consensus         2 ~~~~m~~Ge~~~~~i~~~~~~g~~~-~~~ip~~~~l~~~vel~~~~   46 (414)
                      ||.+|++||++.|.|||++|||..+ ++.||||++|+|+|+|+++.
T Consensus        97 aL~gMk~Ge~~~~~Ip~~laYG~~g~~~~Ipp~s~LiF~VeL~~i~  142 (167)
T 1jvw_A           97 ALQLMREGDRWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELISIK  142 (167)
T ss_dssp             HHTTCCTTCEEEEEECGGGTTTTTCSSSSSCTTCCEEEEEEEEEEG
T ss_pred             HHcCCCCCCEEEEEECchhhCCCCCCCCCcCCCCeEEEEEEEEEEE
Confidence            7899999999999999999999854 57899999999999999975

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.72  E-value=5.4e-08  Score=94.06  Aligned_cols=105  Identities=18%  Similarity=0.254  Sum_probs=92.4

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA-  264 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~-  264 (414)
                      +..+...|..++..|+|.+|+..|.+++.    ..|.+.       .....++.++|.+++.+|+|.+|+..+.+++.+ 
T Consensus         9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~----~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~   77 (406)
T 3sf4_A            9 CLELALEGERLCKSGDCRAGVSFFEAAVQ----VGTEDL-------KTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA   77 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCSCH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHh----cCcccH-------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            66677889999999999999999999999    455552       234578999999999999999999999999887 


Q ss_pred             -----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015006          265 -----NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  301 (414)
Q Consensus       265 -----dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~  301 (414)
                           .|..+.+++.+|.++..+|++++|+..|++++++.|.
T Consensus        78 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  119 (406)
T 3sf4_A           78 RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE  119 (406)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence                 4566889999999999999999999999999998664

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.71  E-value=6.6e-08  Score=93.96  Aligned_cols=129  Identities=12%  Similarity=0.042  Sum_probs=101.7

Q ss_pred             hHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015006          183 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  262 (414)
Q Consensus       183 ~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al  262 (414)
                      ...+..+...|..++..|++..|+..|.+|+.++......        ......+++|+|.+|..+|+|++|+..+.+|+
T Consensus       138 ~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al  209 (378)
T 3q15_A          138 IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY--------SIRTIQSLFVIAGNYDDFKHYDKALPHLEAAL  209 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc--------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            3457777888888888889999999999988865532211        11246789999999999999999999999999


Q ss_pred             HhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hCCCCHHHHHHHHHHHHHHHHHH
Q 015006          263 DANP------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMK-----VDKSSEPDATAALSKLKKQRQEV  320 (414)
Q Consensus       263 ~~dp------~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~-----l~P~n~~~~~~~l~~~~~~~~~~  320 (414)
                      ++.+      ..+.+++++|.++..+|++++|+..|++|++     .+|.. ..+...+..+.....+.
T Consensus       210 ~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~la~~~~~~g~~  277 (378)
T 3q15_A          210 ELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLFGLSWTLCKAGQT  277 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHTTCH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHHHHHHHHHHHCCCH
Confidence            8743      2367899999999999999999999999999     66665 56666777766554433

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.71  E-value=5.4e-08  Score=84.91  Aligned_cols=106  Identities=11%  Similarity=0.121  Sum_probs=91.0

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      .+..+...|..++..|+|.+|+..|.+++..+.....         ......++.|+|.++..+|+|++|+..+.+++.+
T Consensus        25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   95 (203)
T 3gw4_A           25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD---------HTAEHRALHQVGMVERMAGNWDAARRCFLEEREL   95 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC---------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4677888999999999999999999999997654321         1234678999999999999999999999999998


Q ss_pred             ---CC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015006          265 ---NP----AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  299 (414)
Q Consensus       265 ---dp----~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~  299 (414)
                         .+    ....+++++|.++..+|++++|+..|++++.+.
T Consensus        96 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  137 (203)
T 3gw4_A           96 LASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYA  137 (203)
T ss_dssp             HHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence               33    346789999999999999999999999999874

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.70  E-value=8.8e-09  Score=85.76  Aligned_cols=49  Identities=18%  Similarity=0.222  Sum_probs=43.6

Q ss_pred             CccccCCcCcEEEEEEcCCCcCCCCC--CCCCCCCCeeeEEEEeeEEEeee
Q 015006            1 MGIGTMTREEKAVIYVTSQYLTPSPL--MPVVEGCEEVHFEVELVHLIQVR   49 (414)
Q Consensus         1 ~~~~~m~~Ge~~~~~i~~~~~~g~~~--~~~ip~~~~l~~~vel~~~~~~~   49 (414)
                      .||.+|++||++.|.|||++|||..+  ++.||||++|+|+|+|+++....
T Consensus        75 ~~L~gm~~Ge~~~v~ip~~~aYG~~~~~~~~Ip~~~~l~f~vel~~v~~~~  125 (135)
T 2d9f_A           75 LSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDRP  125 (135)
T ss_dssp             TTGGGSCTTCEEEEEECHHHHTCTTCCSSSCCCTTCCEEEEEEEEEEESSC
T ss_pred             HHHhCCCCCCEEEEEEChhHccCcCCcCCCccCCCCeEEEEEEEEEeecCC
Confidence            37899999999999999999999854  57899999999999999987543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.69  E-value=3.4e-07  Score=73.13  Aligned_cols=84  Identities=18%  Similarity=0.215  Sum_probs=75.7

Q ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 015006          234 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  313 (414)
Q Consensus       234 ~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~  313 (414)
                      ...++.++|.+++..++|.+|+..+.+++..+|.++.+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~   89 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY-SKAYGRMGLA   89 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC-HHHHHHHHHH
Confidence            356889999999999999999999999999999999999999999999999999999999999999998 5677677666


Q ss_pred             HHHHH
Q 015006          314 KKQRQ  318 (414)
Q Consensus       314 ~~~~~  318 (414)
                      .....
T Consensus        90 ~~~~~   94 (131)
T 2vyi_A           90 LSSLN   94 (131)
T ss_dssp             HHHTT
T ss_pred             HHHhC
Confidence            55444

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.68  E-value=2.3e-07  Score=76.34  Aligned_cols=97  Identities=12%  Similarity=0.115  Sum_probs=81.2

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 015006          235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS  311 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~---~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~  311 (414)
                      ...+.++|.+++..++|.+|+..+.++++++|++   ..+++++|.++..+|++++|+..|+++++++|++ ..+...+.
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a  106 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD-VKALYRRS  106 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC-HHHHHHHH
Confidence            6688999999999999999999999999999998   9999999999999999999999999999999998 66777777


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcc
Q 015006          312 KLKKQRQEVESKARKQFKGLFD  333 (414)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~  333 (414)
                      .+........+ ....+.+.+.
T Consensus       107 ~~~~~~~~~~~-A~~~~~~al~  127 (148)
T 2dba_A          107 QALEKLGRLDQ-AVLDLQRCVS  127 (148)
T ss_dssp             HHHHHHTCHHH-HHHHHHHHHH
T ss_pred             HHHHHcCCHHH-HHHHHHHHHH
Confidence            77655543333 2344444443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.68  E-value=1.8e-07  Score=96.45  Aligned_cols=116  Identities=17%  Similarity=0.081  Sum_probs=101.0

Q ss_pred             HHHHHhhhcccccccc----------HHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcC--CHHH
Q 015006          186 AEKIRVTGNRLFKEGK----------FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG--ECRK  253 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~----------y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~--~~~~  253 (414)
                      ...+..+|..+.+.++          |.+|+..|.+++.    ..|.+           ..++++++.++.+++  +|++
T Consensus        63 ~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~----~~pK~-----------y~aW~hR~w~l~~l~~~~~~~  127 (567)
T 1dce_A           63 ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR----VNPKS-----------YGTWHHRCWLLSRLPEPNWAR  127 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHTCSSCCHHH
T ss_pred             HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcccccHHH
Confidence            3445666666666666          9999999999999    78887           789999999999999  7799


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 015006          254 SIEACNKVLDANPAHVKGLYRRGMAYMALG-EFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  317 (414)
Q Consensus       254 A~~~~~~al~~dp~~~ka~~r~g~a~~~l~-~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~  317 (414)
                      |+..|+++|++||.|..||+.|+.++..++ .+++|++++.++++++|.| ..+...+..+...+
T Consensus       128 el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n-~saW~~r~~ll~~l  191 (567)
T 1dce_A          128 ELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN-YSSWHYRSCLLPQL  191 (567)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCC-ccHHHHHHHHHHhh
Confidence            999999999999999999999999999999 9999999999999999998 56766666665443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.68  E-value=1.7e-07  Score=87.73  Aligned_cols=82  Identities=15%  Similarity=0.136  Sum_probs=74.4

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                      ...+.++|.++++.|+|.+|+..+.+++.++|.++.+++++|.++..+|++++|+.+|++|++++|++ ..+...+..+.
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~   82 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS-VKAHFFLGQCQ   82 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999998 56666666655


Q ss_pred             HHH
Q 015006          315 KQR  317 (414)
Q Consensus       315 ~~~  317 (414)
                      ..+
T Consensus        83 ~~~   85 (281)
T 2c2l_A           83 LEM   85 (281)
T ss_dssp             HHT
T ss_pred             HHc
Confidence            443

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*

Probab=98.67  E-value=1.4e-08  Score=84.29  Aligned_cols=43  Identities=21%  Similarity=0.180  Sum_probs=39.5

Q ss_pred             ccccCCcCcEEEEEEcCCCcCCCCCC-CCCCCCCeeeEEEEeeE
Q 015006            2 GIGTMTREEKAVIYVTSQYLTPSPLM-PVVEGCEEVHFEVELVH   44 (414)
Q Consensus         2 ~~~~m~~Ge~~~~~i~~~~~~g~~~~-~~ip~~~~l~~~vel~~   44 (414)
                      ||.+|++||++.|.|||++|||..+. +.||||++|+|+|+|++
T Consensus        89 aL~gmk~Ge~~~v~ip~~~aYG~~~~~~~Ipp~~~l~f~VeL~~  132 (133)
T 2y78_A           89 GVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLD  132 (133)
T ss_dssp             HSTTCBTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEE
T ss_pred             HHcCCCCCCEEEEEECcHHhCCCCCCCCCCCCCCeEEEEEEEEE
Confidence            68999999999999999999998554 66999999999999986

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.67  E-value=1.4e-07  Score=89.14  Aligned_cols=87  Identities=11%  Similarity=0.025  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHH
Q 015006          202 FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK-GLYRRGMAYM  280 (414)
Q Consensus       202 y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~k-a~~r~g~a~~  280 (414)
                      +.+|+..|.+|+..   +.|.+           ..++.++|.++.++|++++|+..++++|+++|.++. +|+.+|.++.
T Consensus        80 ~~~A~~~~~rAl~~---~~p~~-----------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  145 (308)
T 2ond_A           80 SDEAANIYERAIST---LLKKN-----------MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR  145 (308)
T ss_dssp             HHHHHHHHHHHHTT---TTTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH---hCccc-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHH
Confidence            49999999999983   25555           557888888888888888888888888888888776 8888888888


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCC
Q 015006          281 ALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       281 ~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      .+|++++|+..|++|++++|.+
T Consensus       146 ~~~~~~~A~~~~~~a~~~~p~~  167 (308)
T 2ond_A          146 RAEGIKSGRMIFKKAREDARTR  167 (308)
T ss_dssp             HHHCHHHHHHHHHHHHTSTTCC
T ss_pred             HhcCHHHHHHHHHHHHhcCCCC
Confidence            8888888888888888887765

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.67  E-value=1.4e-07  Score=89.05  Aligned_cols=111  Identities=11%  Similarity=0.031  Sum_probs=77.0

Q ss_pred             HHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 015006          188 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNL-LHLNVAACLLKLGECRKSIEACNKVLDANP  266 (414)
Q Consensus       188 ~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~-~~~N~a~~~~kl~~~~~A~~~~~~al~~dp  266 (414)
                      .+...|..+.+.|++.+|...|.+++.    +.|.+           .. ++.+++.++.++|++++|+..+.+|++.+|
T Consensus       101 ~~~~~~~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p  165 (308)
T 2ond_A          101 LYFAYADYEESRMKYEKVHSIYNRLLA----IEDID-----------PTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR  165 (308)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHT----SSSSC-----------THHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHh----ccccC-----------ccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence            455666677778899999999999998    56655           22 677777777777777777777777777777


Q ss_pred             CcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          267 AHVKGLYRRGMAYMA-LGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       267 ~~~ka~~r~g~a~~~-l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                      .+..++...+..... +|++++|+..|++|++++|++ ..+...+..+.
T Consensus       166 ~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~  213 (308)
T 2ond_A          166 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI-PEYVLAYIDYL  213 (308)
T ss_dssp             CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHH
Confidence            776666654444332 577777777777777777776 44554444443

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia}

Probab=98.66  E-value=1.4e-08  Score=83.96  Aligned_cols=44  Identities=34%  Similarity=0.393  Sum_probs=39.9

Q ss_pred             ccccCCcCcEEEEEEcCCCcCCCCC-CCCCCCCCeeeEEEEeeEE
Q 015006            2 GIGTMTREEKAVIYVTSQYLTPSPL-MPVVEGCEEVHFEVELVHL   45 (414)
Q Consensus         2 ~~~~m~~Ge~~~~~i~~~~~~g~~~-~~~ip~~~~l~~~vel~~~   45 (414)
                      ||.+|++||++.|.|||++|||..+ ++.||||++|+|+|+|+++
T Consensus        86 aL~gm~~Ge~~~v~ip~~~aYG~~~~~~~Ip~~~~l~f~VeL~~i  130 (130)
T 2lgo_A           86 GVATMTLGEKALFTIPYQLAYGERGYPPVIPPKATLVFEVELLAV  130 (130)
T ss_dssp             HHHHSCTTEEEEEEECTTTSTTTTCCSTTSCSSCCEEEEEEEEEC
T ss_pred             HHhCCCCCCEEEEEECcHHHCCCCCCCCCcCCCCeEEEEEEEEEC
Confidence            6889999999999999999999854 5679999999999999863

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}

Probab=98.66  E-value=1.5e-08  Score=88.55  Aligned_cols=47  Identities=21%  Similarity=0.333  Sum_probs=42.7

Q ss_pred             ccccCCcCcEEEEEEcCCCcCCCCC---CCCCCCCCeeeEEEEeeEEEee
Q 015006            2 GIGTMTREEKAVIYVTSQYLTPSPL---MPVVEGCEEVHFEVELVHLIQV   48 (414)
Q Consensus         2 ~~~~m~~Ge~~~~~i~~~~~~g~~~---~~~ip~~~~l~~~vel~~~~~~   48 (414)
                      ||.+|++||++.|.|||++|||..+   ++.||||++|+|+|+|+++...
T Consensus       112 aL~gMk~Ge~~~v~iPp~~aYG~~g~~~~~~Ip~~s~l~F~VeL~~v~~~  161 (180)
T 2f4e_A          112 GVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDET  161 (180)
T ss_dssp             HHTTCCBTCEEEEEECGGGTTTTTCBSSSSCBCTTCCEEEEEEEEEESCB
T ss_pred             HHhCCCCCCEEEEEECchHhCCcCCcccCCCcCCCCeEEEEEEEEEEecC
Confidence            6899999999999999999999865   4789999999999999998653

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.66  E-value=3.6e-07  Score=84.14  Aligned_cols=62  Identities=15%  Similarity=0.123  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhC
Q 015006          236 LLHLNVAACLLK----LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKVD  299 (414)
Q Consensus       236 ~~~~N~a~~~~k----l~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~----l~~~~eA~~~~~~al~l~  299 (414)
                      .+++++|.+|..    .+++.+|+..+.++++.+  ++.+++++|.++..    .+++++|+..|++|++++
T Consensus        75 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~  144 (273)
T 1ouv_A           75 NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN  144 (273)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC
Confidence            355555555555    555555555555555542  45555555555555    555555555555555554

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.65  E-value=4.5e-07  Score=71.50  Aligned_cols=82  Identities=11%  Similarity=0.024  Sum_probs=70.6

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 015006          235 NLLHLNVAACLLKLGECRKSIEACNKVLDAN-------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDAT  307 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d-------p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~  307 (414)
                      ..-++.+|..+++.++|..|+..+..|+...       +..+..++.+|.++.++|+++.|+..+++|++++|++ ..+.
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~   83 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH-QRAN   83 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-HHHH
Confidence            4567889999999999999999999999863       3568899999999999999999999999999999998 5666


Q ss_pred             HHHHHHHHHH
Q 015006          308 AALSKLKKQR  317 (414)
Q Consensus       308 ~~l~~~~~~~  317 (414)
                      .++..++..+
T Consensus        84 ~n~~~~~~~~   93 (104)
T 2v5f_A           84 GNLKYFEYIM   93 (104)
T ss_dssp             HHHHHHHHHH
T ss_pred             hhHHHHHHHH
Confidence            6666555433

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.64  E-value=5e-07  Score=71.46  Aligned_cols=83  Identities=22%  Similarity=0.381  Sum_probs=74.2

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                      ..++.++|.++...++|++|+..+.+++..+|.++.+++.+|.++...|++++|+..|+++++++|.+ ..+...+..+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~   87 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc-HHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999987 56666666665


Q ss_pred             HHHH
Q 015006          315 KQRQ  318 (414)
Q Consensus       315 ~~~~  318 (414)
                      ....
T Consensus        88 ~~~~   91 (125)
T 1na0_A           88 YKQG   91 (125)
T ss_dssp             HHTT
T ss_pred             HHhc
Confidence            4433

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.64  E-value=3.5e-07  Score=80.21  Aligned_cols=98  Identities=14%  Similarity=0.058  Sum_probs=81.3

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006          235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV----------------KGLYRRGMAYMALGEFEEAQRDFEMMMKV  298 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~----------------ka~~r~g~a~~~l~~~~eA~~~~~~al~l  298 (414)
                      ...+.++|.++++.++|.+|+..+.+++.+.|.++                .+++++|.++..+|+|++|+..|++++++
T Consensus        38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  117 (198)
T 2fbn_A           38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI  117 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            56788999999999999999999999999999887                89999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 015006          299 DKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDK  334 (414)
Q Consensus       299 ~P~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  334 (414)
                      +|++ ..+...+..+...+.+..+ ....+.+.+..
T Consensus       118 ~p~~-~~~~~~lg~~~~~~~~~~~-A~~~~~~al~~  151 (198)
T 2fbn_A          118 DKNN-VKALYKLGVANMYFGFLEE-AKENLYKAASL  151 (198)
T ss_dssp             STTC-HHHHHHHHHHHHHHTCHHH-HHHHHHHHHHH
T ss_pred             Cccc-HHHHHHHHHHHHHcccHHH-HHHHHHHHHHH
Confidence            9998 6677777777655544333 23344444443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.63  E-value=6.2e-07  Score=69.36  Aligned_cols=68  Identities=13%  Similarity=0.087  Sum_probs=63.1

Q ss_pred             hHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          235 NLLHLNVAACLLKLGE---CRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~---~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      ..++..+|.+++..++   ..+|...+.+||.+||+++.|++-+|.+++..|+|++|+..|+++++.+|.+
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            5678889999986666   7999999999999999999999999999999999999999999999999983

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.60  E-value=1.2e-07  Score=91.51  Aligned_cols=108  Identities=19%  Similarity=0.178  Sum_probs=92.1

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      .+..+...|..++..|+|.+|+..|.+++........         ......++.++|.++..+|++++|+..+.+++.+
T Consensus       186 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  256 (406)
T 3sf4_A          186 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---------KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL  256 (406)
T ss_dssp             HHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC---------cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            3556788899999999999999999999996543211         1233568999999999999999999999999998


Q ss_pred             CCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015006          265 NPAH------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  301 (414)
Q Consensus       265 dp~~------~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~  301 (414)
                      .+..      +.+++.+|.++..+|++++|+..|++++++.+.
T Consensus       257 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  299 (406)
T 3sf4_A          257 ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE  299 (406)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence            7765      889999999999999999999999999998543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.59  E-value=1.6e-07  Score=91.71  Aligned_cols=91  Identities=11%  Similarity=0.063  Sum_probs=83.9

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +..+.+.|..+++.|+|.+|+..|++||.    +.|.+           ..+++++|.||..+++|++|+.++.+|++++
T Consensus       273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~  337 (370)
T 1ihg_A          273 LSCVLNIGACKLKMSDWQGAVDSCLEALE----IDPSN-----------TKALYRRAQGWQGLKEYDQALADLKKAQEIA  337 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHT----TCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHH----hCchh-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            55677899999999999999999999999    67766           6799999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHH
Q 015006          266 PAHVKGLYRRGMAYMALGEFEEAQRD  291 (414)
Q Consensus       266 p~~~ka~~r~g~a~~~l~~~~eA~~~  291 (414)
                      |++..++..++.++..++++++|...
T Consensus       338 P~~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          338 PEDKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999888654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.57  E-value=4.3e-07  Score=93.65  Aligned_cols=123  Identities=13%  Similarity=0.086  Sum_probs=99.2

Q ss_pred             cccccH-HHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhC
Q 015006          197 FKEGKF-ELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE----------CRKSIEACNKVLDAN  265 (414)
Q Consensus       197 fk~g~y-~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~----------~~~A~~~~~~al~~d  265 (414)
                      .+.|.| ++|+..|.++|.    .+|.+           ..++++++.++.++++          +++++..++++|+.+
T Consensus        39 ~~~~~~~eeal~~~~~~l~----~nP~~-----------~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~  103 (567)
T 1dce_A           39 RQAGELDESVLELTSQILG----ANPDF-----------ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN  103 (567)
T ss_dssp             HHTTCCSHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHcCCCCHHHHHHHHHHHH----HCchh-----------HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC
Confidence            344544 578999999999    78887           7899999999999998          999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 015006          266 PAHVKGLYRRGMAYMALG--EFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKK  335 (414)
Q Consensus       266 p~~~ka~~r~g~a~~~l~--~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  335 (414)
                      |++..||+.|+-++..++  ++++|++.+.++++++|.| ..+......+...+....+.+-..+.++....
T Consensus       104 pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N-~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~  174 (567)
T 1dce_A          104 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN-FHCWDYRRFVAAQAAVAPAEELAFTDSLITRN  174 (567)
T ss_dssp             TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT
T ss_pred             CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcccc-ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC
Confidence            999999999999999999  7799999999999999998 56777666665554312223333444444433

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.57  E-value=3.1e-07  Score=85.79  Aligned_cols=108  Identities=13%  Similarity=0.020  Sum_probs=81.2

Q ss_pred             HHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Q 015006          188 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN--  265 (414)
Q Consensus       188 ~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d--  265 (414)
                      .....|..+++.++|.+|+..|+.++..     + ++       .+...+++++|.++..+|++.+|+..+.+++...  
T Consensus       137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~-----~-d~-------~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~  203 (282)
T 4f3v_A          137 VAWMKAVVYGAAERWTDVIDQVKSAGKW-----P-DK-------FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAG  203 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTGGGC-----S-CH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhcc-----C-Cc-------ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCC
Confidence            4456677788888888888888766551     1 10       0123578889999999999999999999988544  


Q ss_pred             CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 015006          266 PA-HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAAL  310 (414)
Q Consensus       266 p~-~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l  310 (414)
                      |. .+.+++++|.|+..+|+.++|+..|++++..+|+  ..+...|
T Consensus       204 P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~--~~~~~aL  247 (282)
T 4f3v_A          204 EACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE--PKVAAAL  247 (282)
T ss_dssp             TTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC--HHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--HHHHHHH
Confidence            55 6778999999999999999999999999999987  3444333

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A

Probab=98.56  E-value=2.4e-08  Score=82.47  Aligned_cols=44  Identities=14%  Similarity=0.179  Sum_probs=39.2

Q ss_pred             ccccCCcCcEEEEEEcCCCcCCCCCC------CCCCCCCeeeEEEEeeEE
Q 015006            2 GIGTMTREEKAVIYVTSQYLTPSPLM------PVVEGCEEVHFEVELVHL   45 (414)
Q Consensus         2 ~~~~m~~Ge~~~~~i~~~~~~g~~~~------~~ip~~~~l~~~vel~~~   45 (414)
                      ||.+|++||++.|.|||++|||..+.      +.||||++|+|+|+|+++
T Consensus        79 ~~~~m~~Ge~~~v~ip~~~aYG~~~~~~~~~~~~Ip~~~~l~f~vel~~i  128 (129)
T 1u79_A           79 GIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  128 (129)
T ss_dssp             TBCCCBTTCEEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             cccccCCCCEEEEEEChHHccCCCCCCccccCCcCCCCCeEEEEEEEEEe
Confidence            46779999999999999999998543      589999999999999885

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.56  E-value=1.9e-07  Score=79.31  Aligned_cols=91  Identities=19%  Similarity=0.253  Sum_probs=75.1

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 015006          246 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF----------EEAQRDFEMMMKVDKSSEPDATAALSKLKK  315 (414)
Q Consensus       246 ~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~----------~eA~~~~~~al~l~P~n~~~~~~~l~~~~~  315 (414)
                      -+++.|++|+..+.++++++|+++.+|+++|.++..++++          ++|+..|++||+++|++ .++...+..+..
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~-~~A~~~LG~ay~   91 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK-DEAVWCIGNAYT   91 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHH
Confidence            3567899999999999999999999999999999999876          59999999999999998 678888888876


Q ss_pred             HHH----------HHHHHHHHHHHhhccCCCC
Q 015006          316 QRQ----------EVESKARKQFKGLFDKKPG  337 (414)
Q Consensus       316 ~~~----------~~~~~~~~~~~~~~~~~~~  337 (414)
                      .+.          ..-++....|++.+...+.
T Consensus        92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~  123 (158)
T 1zu2_A           92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPD  123 (158)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HhcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence            553          2444555667766665543

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.54  E-value=1.9e-07  Score=74.72  Aligned_cols=74  Identities=19%  Similarity=0.182  Sum_probs=67.2

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      .+..+...|..++..|+|.+|+..|.+++.    ..|.+           ..+++++|.|+.++|++++|+..+.+++..
T Consensus        26 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   90 (117)
T 3k9i_A           26 LAECYLGLGSTFRTLGEYRKAEAVLANGVK----QFPNH-----------QALRVFYAMVLYNLGRYEQGVELLLKIIAE   90 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCc-----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            467788999999999999999999999999    67776           678999999999999999999999999999


Q ss_pred             CCCcHHHHH
Q 015006          265 NPAHVKGLY  273 (414)
Q Consensus       265 dp~~~ka~~  273 (414)
                      .|+++....
T Consensus        91 ~p~~~~~~~   99 (117)
T 3k9i_A           91 TSDDETIQS   99 (117)
T ss_dssp             HCCCHHHHH
T ss_pred             CCCcHHHHH
Confidence            999987653

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.53  E-value=5.9e-07  Score=71.79  Aligned_cols=98  Identities=11%  Similarity=0.214  Sum_probs=76.6

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHH
Q 015006          235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE------PDATA  308 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~------~~~~~  308 (414)
                      ...+.++|.+++..++|.+|+..+.+++..+|.++.+++.+|.++..+|++++|+..|++++.+.|.+.      ..+..
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999999999987541      23444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcc
Q 015006          309 ALSKLKKQRQEVESKARKQFKGLFD  333 (414)
Q Consensus       309 ~l~~~~~~~~~~~~~~~~~~~~~~~  333 (414)
                      .+..+........ .....+...+.
T Consensus        84 ~la~~~~~~~~~~-~A~~~~~~~~~  107 (131)
T 1elr_A           84 RIGNSYFKEEKYK-DAIHFYNKSLA  107 (131)
T ss_dssp             HHHHHHHHTTCHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHhccHH-HHHHHHHHHHH
Confidence            5555544333222 22334444443

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.53  E-value=8.8e-07  Score=84.03  Aligned_cols=113  Identities=9%  Similarity=-0.092  Sum_probs=91.8

Q ss_pred             HHHHHhhhccccccc--cHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHH----HHc---CCHHHHHH
Q 015006          186 AEKIRVTGNRLFKEG--KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACL----LKL---GECRKSIE  256 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g--~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~----~kl---~~~~~A~~  256 (414)
                      ...+..+|..+...+  .+.+|+..+.++|.    .+|.+           ..++++|+.+.    .++   +++.+++.
T Consensus        67 ~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~----~nPk~-----------y~aW~~R~~iL~~~~~~l~~~~~~~~EL~  131 (306)
T 3dra_A           67 YTIWIYRFNILKNLPNRNLYDELDWCEEIAL----DNEKN-----------YQIWNYRQLIIGQIMELNNNDFDPYREFD  131 (306)
T ss_dssp             HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH----HCTTC-----------CHHHHHHHHHHHHHHHHTTTCCCTHHHHH
T ss_pred             HHHHHHHHHHHHHcccccHHHHHHHHHHHHH----HCccc-----------HHHHHHHHHHHHHHHHhccccCCHHHHHH
Confidence            445667777777777  99999999999998    67777           67888888888    667   78889999


Q ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          257 ACNKVLDANPAHVKGLYRRGMAYMALGEFE--EAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       257 ~~~~al~~dp~~~ka~~r~g~a~~~l~~~~--eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                      .|.++|+.+|.|..|++.|+.++..++.++  ++++.+.++++++|.| -.+......+.
T Consensus       132 ~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N-~sAW~~R~~ll  190 (306)
T 3dra_A          132 ILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKN-NSAWSHRFFLL  190 (306)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence            999999999999999999999999999888  8999999999999988 44555444443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.53  E-value=7.9e-07  Score=79.30  Aligned_cols=78  Identities=13%  Similarity=0.062  Sum_probs=58.0

Q ss_pred             hHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHH
Q 015006          235 NLLHLNVAACLLK----LGECRKSIEACNKVLDANP--AHVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKVDKSSEP  304 (414)
Q Consensus       235 ~~~~~N~a~~~~k----l~~~~~A~~~~~~al~~dp--~~~ka~~r~g~a~~~----l~~~~eA~~~~~~al~l~P~n~~  304 (414)
                      ..+++|+|.+|..    .+++.+|+..+.++++..|  .++.|++++|.+|..    .+++++|+..|++|+++ |.+ .
T Consensus        85 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~-~  162 (212)
T 3rjv_A           85 KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRT-G  162 (212)
T ss_dssp             HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCT-T
T ss_pred             HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCC-H
Confidence            4577788888877    7788888888888888776  357888888888888    77888888888888887 333 3


Q ss_pred             HHHHHHHHHH
Q 015006          305 DATAALSKLK  314 (414)
Q Consensus       305 ~~~~~l~~~~  314 (414)
                      .+...|..+.
T Consensus       163 ~a~~~Lg~~y  172 (212)
T 3rjv_A          163 YAEYWAGMMF  172 (212)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            4555555554

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.53  E-value=4.5e-07  Score=78.89  Aligned_cols=107  Identities=15%  Similarity=0.095  Sum_probs=89.1

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      .+..+...|..++..|+|.+|+..|.+++..+... +.+       ......+++|+|.++..+|++++|+..+.+++.+
T Consensus        65 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~-------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  136 (203)
T 3gw4_A           65 EHRALHQVGMVERMAGNWDAARRCFLEERELLASL-PED-------PLAASANAYEVATVALHFGDLAGARQEYEKSLVY  136 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-CCC-------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-Ccc-------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            56778889999999999999999999999976532 212       1123678999999999999999999999999976


Q ss_pred             CC--C----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015006          265 NP--A----HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  299 (414)
Q Consensus       265 dp--~----~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~  299 (414)
                      .+  .    ...++..+|.++..+|++++|+..|++|+++.
T Consensus       137 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  177 (203)
T 3gw4_A          137 AQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF  177 (203)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence            42  1    24567999999999999999999999999884

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.50  E-value=4.1e-07  Score=78.38  Aligned_cols=107  Identities=15%  Similarity=0.080  Sum_probs=80.4

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHH------------------H------HHhhhhhHHHHHH
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG------------------K------VFVGKRNLLHLNV  241 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~------------------~------~~~~~~~~~~~N~  241 (414)
                      +..+...|..++..|++.+|+..|.+++.    ..| +..-.                  .      ...+....+++++
T Consensus        40 ~~a~~~la~~~~~~g~~~~A~~~~~~a~~----~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~l  114 (176)
T 2r5s_A           40 GDVKLAKADCLLETKQFELAQELLATIPL----EYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACEL  114 (176)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHTTCCG----GGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHhhh----ccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHH
Confidence            34455666666667777777777766655    222 21100                  0      0011225689999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015006          242 AACLLKLGECRKSIEACNKVLDANPAH--VKGLYRRGMAYMALGEFEEAQRDFEMMMK  297 (414)
Q Consensus       242 a~~~~kl~~~~~A~~~~~~al~~dp~~--~ka~~r~g~a~~~l~~~~eA~~~~~~al~  297 (414)
                      |.++..+|++++|+..+.++++++|++  ..+++.+|.++..+|++++|+..|+++|.
T Consensus       115 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          115 AVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            999999999999999999999999976  66999999999999999999999999885

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.50  E-value=1.9e-06  Score=79.17  Aligned_cols=77  Identities=13%  Similarity=0.135  Sum_probs=52.3

Q ss_pred             hHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHH
Q 015006          235 NLLHLNVAACLLK----LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKVDKSSEPDA  306 (414)
Q Consensus       235 ~~~~~N~a~~~~k----l~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~----l~~~~eA~~~~~~al~l~P~n~~~~  306 (414)
                      ..+++|+|.+|..    .+++++|+..+.++++.+  ++.+++++|.++..    .+++++|+..|++++++.+   ..+
T Consensus       110 ~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~---~~a  184 (273)
T 1ouv_A          110 AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKD---SPG  184 (273)
T ss_dssp             HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHH
T ss_pred             ccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC---HHH
Confidence            4567777777777    777777777777777764  56777777777777    7777777777777777642   345


Q ss_pred             HHHHHHHHHH
Q 015006          307 TAALSKLKKQ  316 (414)
Q Consensus       307 ~~~l~~~~~~  316 (414)
                      ...+..+...
T Consensus       185 ~~~lg~~~~~  194 (273)
T 1ouv_A          185 CFNAGNMYHH  194 (273)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            5555555443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.49  E-value=3.4e-07  Score=85.39  Aligned_cols=108  Identities=19%  Similarity=0.195  Sum_probs=91.7

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      .+..+...|..++..|+|.+|+..|.+++.......  +       ......++.++|.++..+|++++|+..+.+++.+
T Consensus       182 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  252 (338)
T 3ro2_A          182 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--D-------KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL  252 (338)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT--C-------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC--C-------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            355677889999999999999999999998654321  1       1233568999999999999999999999999988


Q ss_pred             CCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015006          265 NPAH------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  301 (414)
Q Consensus       265 dp~~------~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~  301 (414)
                      .+..      ..+++.+|.++..+|++++|+..|++++.+.+.
T Consensus       253 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  295 (338)
T 3ro2_A          253 ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE  295 (338)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence            7655      889999999999999999999999999998653

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.49  E-value=6.3e-07  Score=70.67  Aligned_cols=83  Identities=16%  Similarity=0.185  Sum_probs=69.1

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +......|..+|+.++|..|+..|..|+.....-...        ......++.++|.|++++|+++.|+..+.+++.++
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~--------~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~   76 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEIS--------TIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCC--------SSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCC--------cccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence            4556688999999999999999999999865321110        11235789999999999999999999999999999


Q ss_pred             CCcHHHHHHHH
Q 015006          266 PAHVKGLYRRG  276 (414)
Q Consensus       266 p~~~ka~~r~g  276 (414)
                      |++..++.+++
T Consensus        77 P~~~~~~~n~~   87 (104)
T 2v5f_A           77 PEHQRANGNLK   87 (104)
T ss_dssp             TTCHHHHHHHH
T ss_pred             CCCHHHHhhHH
Confidence            99999988876

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.48  E-value=1.9e-07  Score=90.87  Aligned_cols=106  Identities=19%  Similarity=0.242  Sum_probs=90.0

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +..+...|..++..|+|.+|+..|.+++.......  +       ......++.++|.+|+.+|++++|+..+.+++.+.
T Consensus       223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  293 (411)
T 4a1s_A          223 GRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG--D-------RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA  293 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--C-------HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC--C-------cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence            34667789999999999999999999999654311  1       12235689999999999999999999999999988


Q ss_pred             CCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 015006          266 PAH------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK  300 (414)
Q Consensus       266 p~~------~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P  300 (414)
                      +..      ..+++.+|.++..+|++++|+..|++++.+.+
T Consensus       294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  334 (411)
T 4a1s_A          294 VELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ  334 (411)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            744      78999999999999999999999999999854

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.47  E-value=3.6e-06  Score=80.48  Aligned_cols=100  Identities=18%  Similarity=0.105  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 015006          202 FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG--ECRKSIEACNKVLDANPAHVKGLYRRGMAY  279 (414)
Q Consensus       202 y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~--~~~~A~~~~~~al~~dp~~~ka~~r~g~a~  279 (414)
                      +.+++..+..++.    .+|.+           ..++++++.+..+++  .|.+++..|.++|+++|.|..||+.|+.++
T Consensus        90 l~~EL~~~~~~L~----~~PKn-----------y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl  154 (331)
T 3dss_A           90 VKAELGFLESCLR----VNPKS-----------YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVA  154 (331)
T ss_dssp             HHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            7889999999998    67877           789999999999999  499999999999999999999999999999


Q ss_pred             HHcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 015006          280 MALGE-FEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  317 (414)
Q Consensus       280 ~~l~~-~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~  317 (414)
                      ..++. ++++++.+.++++.+|.| ..+...+..+-..+
T Consensus       155 ~~l~~~~~eel~~~~~~I~~~p~N-~SAW~~R~~ll~~l  192 (331)
T 3dss_A          155 AQAAVAPAEELAFTDSLITRNFSN-YSSWHYRSCLLPQL  192 (331)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHCSCC-HHHHHHHHHHHHHH
T ss_pred             HHhCcCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHh
Confidence            99999 699999999999999999 45666666554444

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.46  E-value=3.9e-07  Score=85.38  Aligned_cols=108  Identities=14%  Similarity=0.032  Sum_probs=88.6

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChH-----------------HHH------HHhhhhhHHHHHHH
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDE-----------------EGK------VFVGKRNLLHLNVA  242 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~-----------------e~~------~~~~~~~~~~~N~a  242 (414)
                      +..+...|..+...|++++|+..|.+++.    ..|....                 ...      ...+....+++|+|
T Consensus       151 ~~a~~~la~~~~~~g~~~~A~~~l~~~~~----~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la  226 (287)
T 3qou_A          151 GEIGLLLAETLIALNRSEDAEAVLXTIPL----QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLA  226 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHTTSCG----GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHhCch----hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHH
Confidence            66778889999999999999999988766    3332110                 000      11222356899999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015006          243 ACLLKLGECRKSIEACNKVLDANPAH--VKGLYRRGMAYMALGEFEEAQRDFEMMMK  297 (414)
Q Consensus       243 ~~~~kl~~~~~A~~~~~~al~~dp~~--~ka~~r~g~a~~~l~~~~eA~~~~~~al~  297 (414)
                      .++..+|++++|+..+.++++.+|++  ..++.++|.++..+|+.++|+..|+++|.
T Consensus       227 ~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          227 LQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            99999999999999999999999998  99999999999999999999999999885

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.43  E-value=2.1e-06  Score=81.48  Aligned_cols=103  Identities=11%  Similarity=0.032  Sum_probs=93.3

Q ss_pred             ccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCcHHHHHHHHH
Q 015006          200 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR--KSIEACNKVLDANPAHVKGLYRRGM  277 (414)
Q Consensus       200 g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~--~A~~~~~~al~~dp~~~ka~~r~g~  277 (414)
                      +++.+++..+.+++.    .+|.+           ..++++++.+..+++.|.  +++..|+++|+.+|.|..|+..|+.
T Consensus       124 ~~~~~EL~~~~~~l~----~~pkn-----------y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~  188 (306)
T 3dra_A          124 FDPYREFDILEAMLS----SDPKN-----------HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFF  188 (306)
T ss_dssp             CCTHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            789999999999999    78887           779999999999999999  9999999999999999999999999


Q ss_pred             HHHHcCC------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 015006          278 AYMALGE------FEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  318 (414)
Q Consensus       278 a~~~l~~------~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~  318 (414)
                      ++..++.      ++++++.+.+++.++|+| ..+...+..+-....
T Consensus       189 ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n-~SaW~y~~~ll~~~~  234 (306)
T 3dra_A          189 LLFSKKHLATDNTIDEELNYVKDKIVKCPQN-PSTWNYLLGIHERFD  234 (306)
T ss_dssp             HHHSSGGGCCHHHHHHHHHHHHHHHHHCSSC-HHHHHHHHHHHHHTT
T ss_pred             HHHhccccchhhhHHHHHHHHHHHHHhCCCC-ccHHHHHHHHHHhcC
Confidence            9999998      999999999999999999 567766666654433

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.43  E-value=4.8e-07  Score=70.49  Aligned_cols=80  Identities=13%  Similarity=0.097  Sum_probs=65.5

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +..+...|..++..|+|.+|+..|.+++.    +.|.+           ..+++++|.||.++|++++|+..+.+++++.
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~   71 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVE----TDPDY-----------VGTYYHLGKLYERLDRTDDAIDTYAQGIEVA   71 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTC-----------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            45677889999999999999999999999    67776           6699999999999999999999999999987


Q ss_pred             CCc--HHHHHHHHHHHH
Q 015006          266 PAH--VKGLYRRGMAYM  280 (414)
Q Consensus       266 p~~--~ka~~r~g~a~~  280 (414)
                      |.+  ..+...+..++.
T Consensus        72 ~~~~~~~~~~~l~~~l~   88 (100)
T 3ma5_A           72 REEGTQKDLSELQDAKL   88 (100)
T ss_dssp             HHHSCHHHHHHHHHHHH
T ss_pred             hcCCchhHHHHHHHHHH
Confidence            643  333333343333

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.43  E-value=2.8e-06  Score=68.92  Aligned_cols=101  Identities=12%  Similarity=0.153  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-C-CcHHHHHHHH
Q 015006          202 FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRK---SIEACNKVLDAN-P-AHVKGLYRRG  276 (414)
Q Consensus       202 y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~---A~~~~~~al~~d-p-~~~ka~~r~g  276 (414)
                      ...+...|.+++.    ..+.+           ..+.+|+|.|+.+..+...   ++..+...+..+ | ..-.++|.+|
T Consensus        17 l~~~~~~y~~e~~----~~~~s-----------~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LA   81 (126)
T 1nzn_A           17 LLKFEKKFQSEKA----AGSVS-----------KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA   81 (126)
T ss_dssp             HHHHHHHHHHHHH----HSCCC-----------HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc----cCCCc-----------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence            4455666777665    22222           5688999999999988776   999999988877 5 5788999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 015006          277 MAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  318 (414)
Q Consensus       277 ~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~  318 (414)
                      .+++++|+|+.|+..++.+|+++|+| ..+......++.++.
T Consensus        82 vg~yklg~Y~~A~~~~~~lL~~eP~n-~QA~~Lk~~i~~~i~  122 (126)
T 1nzn_A           82 VGNYRLKEYEKALKYVRGLLQTEPQN-NQAKELERLIDKAMK  122 (126)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHH
Confidence            99999999999999999999999999 667777766665543

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.42  E-value=2.3e-06  Score=76.22  Aligned_cols=112  Identities=10%  Similarity=-0.015  Sum_probs=89.2

Q ss_pred             HHHHHhhhccccc----cccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHH----cCCHHHHHHH
Q 015006          186 AEKIRVTGNRLFK----EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK----LGECRKSIEA  257 (414)
Q Consensus       186 a~~~k~~Gn~~fk----~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~k----l~~~~~A~~~  257 (414)
                      +..+...|..++.    .+++.+|+..|.+|+.    ..+.+         ....+++|+|.+|..    .+++.+|+.+
T Consensus        85 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~----~~~~~---------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~  151 (212)
T 3rjv_A           85 KSGEIVLARVLVNRQAGATDVAHAITLLQDAAR----DSESD---------AAVDAQMLLGLIYASGVHGPEDDVKASEY  151 (212)
T ss_dssp             HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS----STTSH---------HHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH----cCCCc---------chHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence            3445566777776    7888899999988887    33310         115689999999999    8999999999


Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          258 CNKVLDANPAHVKGLYRRGMAYMAL-G-----EFEEAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       258 ~~~al~~dp~~~ka~~r~g~a~~~l-~-----~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                      +.+++++ |.++.+++++|.+|... |     ++++|+.+|++|++...   ..+...|..+.
T Consensus       152 ~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~---~~A~~~l~~l~  210 (212)
T 3rjv_A          152 FKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF---DTGCEEFDRIS  210 (212)
T ss_dssp             HHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC---HHHHHHHHHHH
T ss_pred             HHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHhh
Confidence            9999999 77888999999999875 3     89999999999999864   34666666553

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.39  E-value=4.6e-06  Score=80.23  Aligned_cols=103  Identities=16%  Similarity=0.018  Sum_probs=90.4

Q ss_pred             ccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 015006          200 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG-ECRKSIEACNKVLDANPAHVKGLYRRGMA  278 (414)
Q Consensus       200 g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~-~~~~A~~~~~~al~~dp~~~ka~~r~g~a  278 (414)
                      +..++|+..+.++|.    ++|.+           .+++++++.+...++ .+++++..+..+|..+|.+..+++.|+.+
T Consensus        68 e~se~AL~lt~~~L~----~nP~~-----------ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wl  132 (349)
T 3q7a_A           68 EKSERALELTEIIVR----MNPAH-----------YTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLL  132 (349)
T ss_dssp             CCSHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH----hCchh-----------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            455789999999999    78888           789999999999999 59999999999999999999999999999


Q ss_pred             HHHc-C-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 015006          279 YMAL-G-EFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  318 (414)
Q Consensus       279 ~~~l-~-~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~  318 (414)
                      +..+ + +++++++.+.++|+++|.| -.+.....-+-..+.
T Consensus       133 L~~l~~~~~~~EL~~~~k~L~~dpkN-y~AW~~R~wvl~~l~  173 (349)
T 3q7a_A          133 LDRISPQDPVSEIEYIHGSLLPDPKN-YHTWAYLHWLYSHFS  173 (349)
T ss_dssp             HHHHCCSCCHHHHHHHHHHTSSCTTC-HHHHHHHHHHHHHHH
T ss_pred             HHHhcCCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhc
Confidence            9998 8 9999999999999999998 556655555544443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.37  E-value=3e-06  Score=81.10  Aligned_cols=103  Identities=15%  Similarity=0.115  Sum_probs=89.4

Q ss_pred             ccccHH-HHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCC
Q 015006          198 KEGKFE-LAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE----------CRKSIEACNKVLDANP  266 (414)
Q Consensus       198 k~g~y~-~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~----------~~~A~~~~~~al~~dp  266 (414)
                      +.|.|. +|+..+.++|.    ++|.+           .++++.++.+...++.          +.+++..+..+|..+|
T Consensus        41 ~~~e~s~eaL~~t~~~L~----~nP~~-----------ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P  105 (331)
T 3dss_A           41 QAGELDESVLELTSQILG----ANPDF-----------ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP  105 (331)
T ss_dssp             HTTCCSHHHHHHHHHHHT----TCTTC-----------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HcCCCCHHHHHHHHHHHH----HCchh-----------HHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC
Confidence            566666 79999999999    88888           7888999999888776          7899999999999999


Q ss_pred             CcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 015006          267 AHVKGLYRRGMAYMALGE--FEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  316 (414)
Q Consensus       267 ~~~ka~~r~g~a~~~l~~--~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~  316 (414)
                      .|..+|+.|+.++..++.  +++++..+.++++++|.| -.+......+-..
T Consensus       106 Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprN-y~AW~~R~~vl~~  156 (331)
T 3dss_A          106 KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN-FHCWDYRRFVAAQ  156 (331)
T ss_dssp             TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Confidence            999999999999999994  999999999999999998 5566655555443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.35  E-value=6.9e-07  Score=90.33  Aligned_cols=109  Identities=11%  Similarity=0.071  Sum_probs=92.7

Q ss_pred             hHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015006          183 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  262 (414)
Q Consensus       183 ~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al  262 (414)
                      ...+..+.+.|..+..+|+|++|+..|.++|.+....-+.+       +...+..++|+|.+|..+|+|++|+..+.+||
T Consensus       348 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-------Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al  420 (490)
T 3n71_A          348 LYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN-------NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAY  420 (490)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT-------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC-------CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            34577888999999999999999999999999776555544       45568899999999999999999999999999


Q ss_pred             HhC-----CCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006          263 DAN-----PAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKV  298 (414)
Q Consensus       263 ~~d-----p~~---~ka~~r~g~a~~~l~~~~eA~~~~~~al~l  298 (414)
                      ++-     |++   .+.+-.+++++..++.|.+|...|.+|.+-
T Consensus       421 ~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          421 AILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             HHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            763     444   566778999999999999999999988653

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.33  E-value=8.8e-06  Score=67.40  Aligned_cols=89  Identities=11%  Similarity=-0.031  Sum_probs=79.1

Q ss_pred             hhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCC
Q 015006          192 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK----LGECRKSIEACNKVLDANPA  267 (414)
Q Consensus       192 ~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~k----l~~~~~A~~~~~~al~~dp~  267 (414)
                      .|..++..+.+..|+..|++|...      .+           ..+++|+|.+|..    .+++.+|+.++.+|.+.  .
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~------g~-----------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g   91 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL------NS-----------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--N   91 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT------TC-----------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--T
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC------CC-----------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--C
Confidence            667777778888899999999982      22           5689999999999    89999999999999887  7


Q ss_pred             cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhC
Q 015006          268 HVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKVD  299 (414)
Q Consensus       268 ~~ka~~r~g~a~~~----l~~~~eA~~~~~~al~l~  299 (414)
                      ++.|++++|.+|..    .+++++|+..|++|.++.
T Consensus        92 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           92 DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            89999999999999    999999999999999985

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.28  E-value=3e-06  Score=81.58  Aligned_cols=112  Identities=13%  Similarity=-0.012  Sum_probs=96.4

Q ss_pred             HHHHhhhccccccc-cHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHc-C-CHHHHHHHHHHHHH
Q 015006          187 EKIRVTGNRLFKEG-KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL-G-ECRKSIEACNKVLD  263 (414)
Q Consensus       187 ~~~k~~Gn~~fk~g-~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl-~-~~~~A~~~~~~al~  263 (414)
                      ..+..+|..+...+ .+.+|+..+.++|.    .+|.+           ..++++|+.+..++ + ++.+++..|.++|+
T Consensus        89 taWn~R~~iL~~l~~~l~eEL~~~~~~L~----~nPKn-----------y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~  153 (349)
T 3q7a_A           89 TVWQYRFSLLTSLNKSLEDELRLMNEFAV----QNLKS-----------YQVWHHRLLLLDRISPQDPVSEIEYIHGSLL  153 (349)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHH----TTCCC-----------HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence            34566677777777 59999999999998    78888           78999999999998 7 89999999999999


Q ss_pred             hCCCcHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          264 ANPAHVKGLYRRGMAYMALGEFE--------EAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       264 ~dp~~~ka~~r~g~a~~~l~~~~--------eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                      .+|.|..|++.|+-++..++.++        ++++.+.++++++|.| ..+......+.
T Consensus       154 ~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N-~SAW~~R~~lL  211 (349)
T 3q7a_A          154 PDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRN-NSAWGWRWYLR  211 (349)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence            99999999999999999999888        9999999999999998 44555554443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.26  E-value=2e-06  Score=68.22  Aligned_cols=81  Identities=12%  Similarity=0.060  Sum_probs=65.9

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +..+...|..++..|+|.+|+..|.+++.    ..|.+           ..++.++|.|+..+|++++|+..+.+++.++
T Consensus        19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~   83 (115)
T 2kat_A           19 MLLRFTLGKTYAEHEQFDAALPHLRAALD----FDPTY-----------SVAWKWLGKTLQGQGDRAGARQAWESGLAAA   83 (115)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHH----HCCCc-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            45677889999999999999999999999    56666           6689999999999999999999999999998


Q ss_pred             CC--cHHHHHHHHHHHHH
Q 015006          266 PA--HVKGLYRRGMAYMA  281 (414)
Q Consensus       266 p~--~~ka~~r~g~a~~~  281 (414)
                      |.  +..++..+..++..
T Consensus        84 ~~~~~~~~~~~l~~~l~~  101 (115)
T 2kat_A           84 QSRGDQQVVKELQVFLRR  101 (115)
T ss_dssp             HHHTCHHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHH
Confidence            74  33444444444333

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.25  E-value=1.7e-06  Score=80.65  Aligned_cols=130  Identities=14%  Similarity=0.047  Sum_probs=96.7

Q ss_pred             hhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--
Q 015006          191 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH--  268 (414)
Q Consensus       191 ~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~--  268 (414)
                      ..+..+...|+|.+|...|..++.    ..|.+           . +++++|.++++.++|.+|+..+..++...+..  
T Consensus       107 ayA~~L~~~g~y~eA~~~l~~~~~----~~p~~-----------~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~  170 (282)
T 4f3v_A          107 GFAACEAAQGNYADAMEALEAAPV----AGSEH-----------L-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLA  170 (282)
T ss_dssp             HHHHHHHHHTCHHHHHHHHTSSCC----TTCHH-----------H-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHh----cCCch-----------H-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccH
Confidence            445566677899999999987765    34432           4 88999999999999999999999887753221  


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 015006          269 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVD--KSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPG  337 (414)
Q Consensus       269 ~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~--P~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (414)
                      ..++|.+|.++..+|++++|+..|++++...  |....++...+..+...+.+ ..+....++++....+.
T Consensus       171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr-~deA~~~l~~a~a~~P~  240 (282)
T 4f3v_A          171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGN-ESAAVALLEWLQTTHPE  240 (282)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCc
Confidence            4589999999999999999999999999654  55334566666666555443 33445667777766554

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.23  E-value=3.5e-06  Score=81.03  Aligned_cols=108  Identities=16%  Similarity=0.075  Sum_probs=84.1

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      .+..+...|..++..|+|..|...|.+++.......  +       ......+++|+|.++..+|+|.+|+..+.+++.+
T Consensus        52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~-------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~  122 (373)
T 1hz4_A           52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD--V-------WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQL  122 (373)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT--C-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcC--c-------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            455667788888889999999999999988543221  1       1122456788999999999999999999998876


Q ss_pred             C--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015006          265 N--------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  301 (414)
Q Consensus       265 d--------p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~  301 (414)
                      .        |....++..+|.++..+|++++|...|++++.+.|.
T Consensus       123 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  167 (373)
T 1hz4_A          123 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS  167 (373)
T ss_dssp             HHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred             HHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence            4        345667888899999999999999999999988764

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.21  E-value=8.8e-06  Score=78.22  Aligned_cols=107  Identities=13%  Similarity=0.119  Sum_probs=88.7

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +..+...|..++..|+|.+|+..|.+++..........       ......++.|+|.++..+|++++|+..+.+++.+.
T Consensus        93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  165 (373)
T 1hz4_A           93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ-------LPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL  165 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTT-------STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc-------CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            34466788999999999999999999998654322110       01235688999999999999999999999999987


Q ss_pred             CC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015006          266 PA-----HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  299 (414)
Q Consensus       266 p~-----~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~  299 (414)
                      +.     ...+++.+|.++...|++++|+..+++++.+.
T Consensus       166 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~  204 (373)
T 1hz4_A          166 SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLL  204 (373)
T ss_dssp             TTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             hccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            75     35689999999999999999999999999874

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.15  E-value=9.7e-06  Score=82.34  Aligned_cols=102  Identities=12%  Similarity=0.039  Sum_probs=78.0

Q ss_pred             HHHHhhhccccc-------cccHH-------HHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHH
Q 015006          187 EKIRVTGNRLFK-------EGKFE-------LAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR  252 (414)
Q Consensus       187 ~~~k~~Gn~~fk-------~g~y~-------~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~  252 (414)
                      ..+...|..+.+       .|++.       +|+..|.+|+..   +.|.+           ..+++++|..+.++|+++
T Consensus       273 ~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~---~~p~~-----------~~l~~~~~~~~~~~g~~~  338 (530)
T 2ooe_A          273 DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST---LLKKN-----------MLLYFAYADYEESRMKYE  338 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT---TCSSC-----------HHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH---hCccc-----------HHHHHHHHHHHHhcCCHH
Confidence            345556666664       68877       899999999962   24555           567888888888888888


Q ss_pred             HHHHHHHHHHHhCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          253 KSIEACNKVLDANPAHV-KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       253 ~A~~~~~~al~~dp~~~-ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      +|+..+.++++++|.++ .+|...|.++..+|++++|+..|++|++..|.+
T Consensus       339 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~  389 (530)
T 2ooe_A          339 KVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR  389 (530)
T ss_dssp             HHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCC
T ss_pred             HHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCc
Confidence            88888888888888774 688888888777777778887787777776654

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.10  E-value=4.3e-05  Score=77.53  Aligned_cols=116  Identities=10%  Similarity=0.111  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-hCCC
Q 015006          203 ELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK-------LGECR-------KSIEACNKVLD-ANPA  267 (414)
Q Consensus       203 ~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~k-------l~~~~-------~A~~~~~~al~-~dp~  267 (414)
                      ..|+..|.+|+.    ..|.+           ..+++++|..+.+       +|+++       +|+..+.+|++ +.|+
T Consensus       255 ~~a~~~y~~al~----~~p~~-----------~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~  319 (530)
T 2ooe_A          255 KRVMFAYEQCLL----VLGHH-----------PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK  319 (530)
T ss_dssp             HHHHHHHHHHHH----HHTTC-----------HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS
T ss_pred             HHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc
Confidence            477888999998    45555           6689999999886       79987       99999999997 8999


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 015006          268 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDK  334 (414)
Q Consensus       268 ~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  334 (414)
                      ++.+++.+|.++..+|++++|+..|++++++.|.+...+...+..+..+... ....+..+.+....
T Consensus       320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~Al~~  385 (530)
T 2ooe_A          320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG-IKSGRMIFKKARED  385 (530)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTC
T ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcC-HHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999998733455555555443332 23334555555443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.07  E-value=3.2e-05  Score=77.66  Aligned_cols=77  Identities=14%  Similarity=0.144  Sum_probs=66.1

Q ss_pred             hHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCC---CH
Q 015006          235 NLLHLNVAACLLK----LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKVDKS---SE  303 (414)
Q Consensus       235 ~~~~~N~a~~~~k----l~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~----l~~~~eA~~~~~~al~l~P~---n~  303 (414)
                      ..+++|+|.+|..    .+++++|+.++.++++.  .++.+++++|.+|..    .+++++|+..|++|++.+|+   + 
T Consensus       363 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~-  439 (490)
T 2xm6_A          363 KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGT-  439 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHH-
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCC-
Confidence            5688999999999    89999999999999886  479999999999999    89999999999999999954   4 


Q ss_pred             HHHHHHHHHHH
Q 015006          304 PDATAALSKLK  314 (414)
Q Consensus       304 ~~~~~~l~~~~  314 (414)
                      ..+...|..+.
T Consensus       440 ~~a~~~l~~~~  450 (490)
T 2xm6_A          440 ENRNITEKKLT  450 (490)
T ss_dssp             HHHHHHHTTSC
T ss_pred             HHHHHHHHhcC
Confidence            45666665553

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.06  E-value=5.6e-05  Score=61.52  Aligned_cols=83  Identities=18%  Similarity=0.239  Sum_probs=71.4

Q ss_pred             hHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 015006          235 NLLHLNVAACLLKLGE---CRKSIEACNKVLDANPA-HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAAL  310 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~---~~~A~~~~~~al~~dp~-~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l  310 (414)
                      ..+.+|.|.|+.+..+   ..+++..+...++.+|. .-..+|.+|.+++++|+|+.|+..++.+|+++|+| ..+....
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N-~QA~~Lk  118 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN-KQVGALK  118 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC-HHHHHHH
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC-HHHHHHH
Confidence            5678999999999876   45689999999998884 57899999999999999999999999999999999 6677777


Q ss_pred             HHHHHHHH
Q 015006          311 SKLKKQRQ  318 (414)
Q Consensus       311 ~~~~~~~~  318 (414)
                      ..++.++.
T Consensus       119 ~~Ie~ki~  126 (134)
T 3o48_A          119 SMVEDKIQ  126 (134)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77766655

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.00  E-value=0.00011  Score=60.63  Aligned_cols=82  Identities=17%  Similarity=0.237  Sum_probs=69.8

Q ss_pred             hHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 015006          235 NLLHLNVAACLLKLGEC---RKSIEACNKVLDANP-AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAAL  310 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~~---~~A~~~~~~al~~dp-~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l  310 (414)
                      ..+.+|.|.|+.+..+-   .+++..++..+...| ..-..+|.+|.+++++|+|++|+..++..|+++|+| ..+....
T Consensus        39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n-~QA~~Lk  117 (144)
T 1y8m_A           39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN-KQVGALK  117 (144)
T ss_dssp             HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC-HHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc-HHHHHHH
Confidence            56889999999998864   468889999999888 467799999999999999999999999999999999 5677666


Q ss_pred             HHHHHHH
Q 015006          311 SKLKKQR  317 (414)
Q Consensus       311 ~~~~~~~  317 (414)
                      ..++.++
T Consensus       118 ~~Ie~~i  124 (144)
T 1y8m_A          118 SMVEDKI  124 (144)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6665444

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.87  E-value=0.00011  Score=70.67  Aligned_cols=109  Identities=13%  Similarity=0.095  Sum_probs=81.7

Q ss_pred             HHhhhccccc---cccHHHHHHHHHHHHhhcccCCCCChHHHH---------------------H------------Hhh
Q 015006          189 IRVTGNRLFK---EGKFELAKAKYEKVLRDFNHVNPQDDEEGK---------------------V------------FVG  232 (414)
Q Consensus       189 ~k~~Gn~~fk---~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~---------------------~------------~~~  232 (414)
                      +.-+|..++.   ...+.+|+.+|.+|+.    ++|....-..                     .            ...
T Consensus       199 l~Lra~~~l~~~~~~~~~~A~~l~e~Al~----lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~  274 (372)
T 3ly7_A          199 NFYQAHDYLLHGDDKSLNRASELLGEIVQ----SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELN  274 (372)
T ss_dssp             HHHHHHHHHHHCSHHHHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCC
Confidence            3444555443   3457899999999998    5666422111                     0            001


Q ss_pred             hhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          233 KRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       233 ~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      ....+|.-+|.+++..|++++|+..+++|+.++| ++-+|.-+|.++...|++++|++.|.+|+.++|..
T Consensus       275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~  343 (372)
T 3ly7_A          275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA  343 (372)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred             cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            1123455566777778999999999999999997 57889999999999999999999999999999985

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.86  E-value=7.3e-05  Score=82.71  Aligned_cols=107  Identities=22%  Similarity=0.309  Sum_probs=85.7

Q ss_pred             HHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-
Q 015006          188 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP-  266 (414)
Q Consensus       188 ~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp-  266 (414)
                      .+...|..++..|+|.+|+..|.+|-                       .|..+|.|+.++|+|+.|++.+.+|...++ 
T Consensus      1197 d~~~iGd~le~eg~YeeA~~~Y~kA~-----------------------ny~rLA~tLvkLge~q~AIEaarKA~n~~aW 1253 (1630)
T 1xi4_A         1197 HIQQVGDRCYDEKMYDAAKLLYNNVS-----------------------NFGRLASTLVHLGEYQAAVDGARKANSTRTW 1253 (1630)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhhh-----------------------HHHHHHHHHHHhCCHHHHHHHHHHhCCHHHH
Confidence            45579999999999999999998863                       467799999999999999999998844332 


Q ss_pred             ------------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 015006          267 ------------------------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  318 (414)
Q Consensus       267 ------------------------~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~  318 (414)
                                              .++..+.+++..|...|.|++|+..|+++|.++|.+ ..+..+|..+..+.+
T Consensus      1254 kev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH-~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A         1254 KEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAH-MGMFTELAILYSKFK 1328 (1630)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhH-hHHHHHHHHHHHhCC
Confidence                                    134455677778889999999999999999999887 567767777655443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.86  E-value=7.4e-05  Score=74.53  Aligned_cols=115  Identities=13%  Similarity=0.074  Sum_probs=64.0

Q ss_pred             HHHhhhccccccc---cHHHHHHHHHHHHhhcccCCCCChH--------------------HH-----HHHhhhhhHHHH
Q 015006          188 KIRVTGNRLFKEG---KFELAKAKYEKVLRDFNHVNPQDDE--------------------EG-----KVFVGKRNLLHL  239 (414)
Q Consensus       188 ~~k~~Gn~~fk~g---~y~~A~~~Y~~al~~~~~~~p~~~~--------------------e~-----~~~~~~~~~~~~  239 (414)
                      .+...|..+.+.|   ++.+|+..|.+++.    ..+....                    ..     +.. .-...+++
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~----~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~~~a~~  252 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVS----RGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGYPASWV  252 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----TTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGSTHHHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCCHHHHH
Confidence            3456677777788   99999999999987    3333311                    00     001 12234555


Q ss_pred             HHHHH-H--HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 015006          240 NVAAC-L--LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG-----EFEEAQRDFEMMMKVDKSSEPDATAALS  311 (414)
Q Consensus       240 N~a~~-~--~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~-----~~~eA~~~~~~al~l~P~n~~~~~~~l~  311 (414)
                      |+|.+ +  ...+++.+|+.++.++++.  .++.|++++|.+|. .|     ++++|+.+|++|+   |.+ ..+...|.
T Consensus       253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~-~~A~~~Lg  325 (452)
T 3e4b_A          253 SLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GRE-VAADYYLG  325 (452)
T ss_dssp             HHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTC-HHHHHHHH
T ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCC-HHHHHHHH
Confidence            55555 2  3455566666666655543  35556666665555 33     5666666666655   444 44555555


Q ss_pred             HHH
Q 015006          312 KLK  314 (414)
Q Consensus       312 ~~~  314 (414)
                      .+.
T Consensus       326 ~~y  328 (452)
T 3e4b_A          326 QIY  328 (452)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.84  E-value=0.00022  Score=58.79  Aligned_cols=94  Identities=13%  Similarity=0.059  Sum_probs=78.7

Q ss_pred             cccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 015006          199 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA  278 (414)
Q Consensus       199 ~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a  278 (414)
                      .+++.+|+..|+++.+    ....             .++  +|.+|.....+++|+.++.++.+.  .++.|++++|.+
T Consensus         8 ~~d~~~A~~~~~~aa~----~g~~-------------~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~   66 (138)
T 1klx_A            8 KKDLKKAIQYYVKACE----LNEM-------------FGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDF   66 (138)
T ss_dssp             HHHHHHHHHHHHHHHH----TTCT-------------THH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHc----CCCH-------------hhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHH
Confidence            3589999999999998    3322             233  999999999999999999999987  789999999999


Q ss_pred             HHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 015006          279 YMA----LGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  316 (414)
Q Consensus       279 ~~~----l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~  316 (414)
                      |..    .+++++|+..|++|.+..  + ..+...|..+...
T Consensus        67 y~~G~g~~~d~~~A~~~~~~Aa~~g--~-~~a~~~Lg~~y~~  105 (138)
T 1klx_A           67 YENGKYVKKDLRKAAQYYSKACGLN--D-QDGCLILGYKQYA  105 (138)
T ss_dssp             HHHCSSSCCCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHH
T ss_pred             HHcCCCCCccHHHHHHHHHHHHcCC--C-HHHHHHHHHHHHC
Confidence            999    899999999999999883  3 5677777776543

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.82  E-value=4.7e-05  Score=75.24  Aligned_cols=105  Identities=23%  Similarity=0.313  Sum_probs=65.4

Q ss_pred             HHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-
Q 015006          188 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP-  266 (414)
Q Consensus       188 ~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp-  266 (414)
                      .+...|+.++..|+|++|...|.++                       .-|.++|.|+.++|+|.+|++.+.++.  +| 
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a-----------------------~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~  178 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV-----------------------SNFGRLASTLVHLGEYQAAVDGARKAN--STR  178 (449)
T ss_dssp             -------------CTTTHHHHHHHT-----------------------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh-----------------------hhHHHHHHHHHHhccHHHHHHHHHHcC--Cch
Confidence            6667778888888888888888754                       135667777777777777777777771  21 


Q ss_pred             --------------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 015006          267 --------------------------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  318 (414)
Q Consensus       267 --------------------------~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~  318 (414)
                                                .++.-+..+...|...|+|++|+..|+++|.+++.+ -.+-.+|..+..+.+
T Consensus       179 ~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah-~~~ftel~il~~ky~  255 (449)
T 1b89_A          179 TWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAH-MGMFTELAILYSKFK  255 (449)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCC-HHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHH-HHHHHHHHHHHHhcC
Confidence                                      122223344577888999999999999999999998 567777777765543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=97.80  E-value=0.00028  Score=70.67  Aligned_cols=93  Identities=11%  Similarity=0.079  Sum_probs=46.5

Q ss_pred             HHHHHhhhccccc----cccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHH----cCCHHHHHHH
Q 015006          186 AEKIRVTGNRLFK----EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK----LGECRKSIEA  257 (414)
Q Consensus       186 a~~~k~~Gn~~fk----~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~k----l~~~~~A~~~  257 (414)
                      +..+...|..++.    .+++.+|+..|++++..      .+           ..+++++|.+|..    .+++.+|+..
T Consensus        39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~------~~-----------~~a~~~Lg~~y~~g~g~~~~~~~A~~~  101 (490)
T 2xm6_A           39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ------GY-----------TPAEYVLGLRYMNGEGVPQDYAQAVIW  101 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------TC-----------HHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC------CC-----------HHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence            3344555666665    67777788777777761      11           2344444444444    4444444444


Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Q 015006          258 CNKVLDANPAHVKGLYRRGMAYMA----LGEFEEAQRDFEMMMK  297 (414)
Q Consensus       258 ~~~al~~dp~~~ka~~r~g~a~~~----l~~~~eA~~~~~~al~  297 (414)
                      +.++++.  .++.+++++|.+|..    .+++++|+..|++|++
T Consensus       102 ~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~  143 (490)
T 2xm6_A          102 YKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAE  143 (490)
T ss_dssp             HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence            4444432  234444444444444    4444444444444443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.79  E-value=0.00015  Score=70.72  Aligned_cols=116  Identities=12%  Similarity=0.142  Sum_probs=86.0

Q ss_pred             HHHHHHHhhhccccccccHHHHHHHHHHHHhhcccC------------------CCCChHHHHHH-------------hh
Q 015006          184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV------------------NPQDDEEGKVF-------------VG  232 (414)
Q Consensus       184 ~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~------------------~p~~~~e~~~~-------------~~  232 (414)
                      .....+...|..+++.|+|++|+..|.+++.+...+                  .+...+....+             ..
T Consensus        53 ~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  132 (434)
T 4b4t_Q           53 EQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVF  132 (434)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCS
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccH
Confidence            345566777777788888888887777766544322                  12221111100             11


Q ss_pred             hhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015006          233 KRNLLHLNVAACLLKLGECRKSIEACNKVLDA------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  299 (414)
Q Consensus       233 ~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~------dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~  299 (414)
                      ++..++.|+|.+|..+|+|.+|+..+.+++..      .+..+.++...|++|..+|+|++|+..|++++.+.
T Consensus       133 ~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~  205 (434)
T 4b4t_Q          133 LKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAA  205 (434)
T ss_dssp             SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence            34678999999999999999999999999875      34457899999999999999999999999999874

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.74  E-value=0.00011  Score=68.32  Aligned_cols=91  Identities=11%  Similarity=0.042  Sum_probs=77.3

Q ss_pred             ccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCc-HHH
Q 015006          198 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL-----GECRKSIEACNKVLDANPAH-VKG  271 (414)
Q Consensus       198 k~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl-----~~~~~A~~~~~~al~~dp~~-~ka  271 (414)
                      ..+....|.....+|++    ++|..         +...+|.-+|..|.+.     |+.++|..++++||+++|+. +.+
T Consensus       175 Al~~l~~A~a~lerAle----LDP~~---------~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~  241 (301)
T 3u64_A          175 LPDTVHAAVMMLERACD----LWPSY---------QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDH  241 (301)
T ss_dssp             CHHHHHHHHHHHHHHHH----HCTTH---------HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHH
T ss_pred             HHHhHHHHHHHHHHHHH----hCCCc---------ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchH
Confidence            33456677777788887    56653         1267899999999996     99999999999999999975 999


Q ss_pred             HHHHHHHHHHc-CCHHHHHHHHHHHHhhCCC
Q 015006          272 LYRRGMAYMAL-GEFEEAQRDFEMMMKVDKS  301 (414)
Q Consensus       272 ~~r~g~a~~~l-~~~~eA~~~~~~al~l~P~  301 (414)
                      ++..|..++.. +++++|.+.|++|+..+|.
T Consensus       242 ~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          242 HITYADALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence            99999999885 9999999999999999776

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.71  E-value=0.00014  Score=80.53  Aligned_cols=108  Identities=18%  Similarity=0.143  Sum_probs=82.3

Q ss_pred             HhhhccccccccHHHHHHHHHHHHhhccc----C-CCCChHHHHHH--hhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015006          190 RVTGNRLFKEGKFELAKAKYEKVLRDFNH----V-NPQDDEEGKVF--VGKRNLLHLNVAACLLKLGECRKSIEACNKVL  262 (414)
Q Consensus       190 k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~----~-~p~~~~e~~~~--~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al  262 (414)
                      .+.|..+...|.|++|+..|+++-.....    + ...+-+....+  +-....+|+++|.++.++|+|++|+..|.+| 
T Consensus      1053 ~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A         1053 PDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence            44588899999999999999986431110    0 00010110011  1123468999999999999999999999887 


Q ss_pred             HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          263 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       263 ~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                          +++.+|++.|.++.++|+|++|++.|.+|.+..++.
T Consensus      1132 ----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~ 1167 (1630)
T 1xi4_A         1132 ----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES 1167 (1630)
T ss_pred             ----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc
Confidence                899999999999999999999999999999988653

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.70  E-value=0.00021  Score=59.96  Aligned_cols=78  Identities=12%  Similarity=0.088  Sum_probs=60.8

Q ss_pred             HHHHhhhccccccc---cHHHHHHHHHHHHhhcccCC-CCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015006          187 EKIRVTGNRLFKEG---KFELAKAKYEKVLRDFNHVN-PQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  262 (414)
Q Consensus       187 ~~~k~~Gn~~fk~g---~y~~A~~~Y~~al~~~~~~~-p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al  262 (414)
                      ....+.|..+.+..   ++.+|+..+...++    .. |.          ....+++|+|.+|+++++|.+|+.+|+++|
T Consensus        33 ~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~----~~~p~----------~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL   98 (152)
T 1pc2_A           33 STQFEYAWCLVRSKYNDDIRKGIVLLEELLP----KGSKE----------EQRDYVFYLAVGNYRLKEYEKALKYVRGLL   98 (152)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH----HSCHH----------HHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh----cCCcc----------chHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            44455666666666   77899999999888    22 21          235689999999999999999999999999


Q ss_pred             HhCCCcHHHHHHHHHH
Q 015006          263 DANPAHVKGLYRRGMA  278 (414)
Q Consensus       263 ~~dp~~~ka~~r~g~a  278 (414)
                      +++|+|..|..-+..+
T Consensus        99 ~ieP~n~QA~~Lk~~i  114 (152)
T 1pc2_A           99 QTEPQNNQAKELERLI  114 (152)
T ss_dssp             HHCTTCHHHHHHHHHH
T ss_pred             hcCCCCHHHHHHHHHH
Confidence            9999998887654433

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.64  E-value=5e-05  Score=75.39  Aligned_cols=93  Identities=11%  Similarity=0.070  Sum_probs=74.7

Q ss_pred             hHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015006          183 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  262 (414)
Q Consensus       183 ~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al  262 (414)
                      ...+..+.+.|..+..+|+|.+|+..|.++|.+.....+.+       +......++|+|.+|..+|+|++|+..+.+|+
T Consensus       326 ~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~-------Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al  398 (429)
T 3qwp_A          326 IYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS-------HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF  398 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS-------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC-------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            34577888899999999999999999999999876655555       45668899999999999999999999999999


Q ss_pred             HhC-----CCc---HHHHHHHHHHHHHc
Q 015006          263 DAN-----PAH---VKGLYRRGMAYMAL  282 (414)
Q Consensus       263 ~~d-----p~~---~ka~~r~g~a~~~l  282 (414)
                      ++-     |++   ...+.+++.++..+
T Consensus       399 ~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          399 DIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            763     554   34445566666544

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.62  E-value=0.00017  Score=70.39  Aligned_cols=105  Identities=13%  Similarity=0.090  Sum_probs=87.0

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      .+..+...|+.++..|+|.+|+..+.+++..+......         .....++++++.+|..+++|.+|...+++++.+
T Consensus       134 ~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  204 (434)
T 4b4t_Q          134 KHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK---------PSLVDVHLLESKVYHKLRNLAKSKASLTAARTA  204 (434)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS---------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc---------hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            35667788999999999999999999999876544332         234678999999999999999999999999877


Q ss_pred             CC---C--c--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006          265 NP---A--H--VKGLYRRGMAYMALGEFEEAQRDFEMMMKV  298 (414)
Q Consensus       265 dp---~--~--~ka~~r~g~a~~~l~~~~eA~~~~~~al~l  298 (414)
                      .+   .  .  ...+...|..+...++|++|..+|..+++.
T Consensus       205 ~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~  245 (434)
T 4b4t_Q          205 ANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES  245 (434)
T ss_dssp             HHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred             hhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            43   2  1  456677899999999999999999999875

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.58  E-value=9.7e-05  Score=73.34  Aligned_cols=75  Identities=11%  Similarity=0.015  Sum_probs=65.0

Q ss_pred             HHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015006          184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  263 (414)
Q Consensus       184 ~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~  263 (414)
                      ..+..+.+.|..+..+|+|++|+..|.++|.+....-+.+       +...+..++|+|.+|..+|+|++|+..+.+||+
T Consensus       338 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-------Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          338 YMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY-------SLNVASMWLKLGRLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS-------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC-------ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            3467788999999999999999999999999876655544       455688999999999999999999999999997


Q ss_pred             hC
Q 015006          264 AN  265 (414)
Q Consensus       264 ~d  265 (414)
                      +-
T Consensus       411 i~  412 (433)
T 3qww_A          411 IM  412 (433)
T ss_dssp             HH
T ss_pred             HH
Confidence            63

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.55  E-value=0.00043  Score=68.96  Aligned_cols=74  Identities=15%  Similarity=0.096  Sum_probs=63.5

Q ss_pred             hHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHH
Q 015006          235 NLLHLNVAACLLKLG-----ECRKSIEACNKVLDANPAHVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKVDKSSEPD  305 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~-----~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~----l~~~~eA~~~~~~al~l~P~n~~~  305 (414)
                      ..+++|+|.+|. .|     ++.+|+.++.+|+   +.++.|++++|.+|..    ..++++|+..|++|.+...   ..
T Consensus       283 ~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~  355 (452)
T 3e4b_A          283 PRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NS  355 (452)
T ss_dssp             HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TT
T ss_pred             HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HH
Confidence            568999999998 45     9999999999998   8999999999999988    4599999999999998653   34


Q ss_pred             HHHHHHHHHH
Q 015006          306 ATAALSKLKK  315 (414)
Q Consensus       306 ~~~~l~~~~~  315 (414)
                      +...|..+..
T Consensus       356 A~~~Lg~~y~  365 (452)
T 3e4b_A          356 ADFAIAQLFS  365 (452)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6777777764

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.50  E-value=0.00039  Score=65.57  Aligned_cols=86  Identities=15%  Similarity=0.045  Sum_probs=71.8

Q ss_pred             ccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCcH
Q 015006          200 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA----------NPAHV  269 (414)
Q Consensus       200 g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~----------dp~~~  269 (414)
                      +++..|...|.++..    ..|..         ....+++|   |++++|+|++|...+..+++.          +|+++
T Consensus       192 ~~~q~A~~~f~El~~----~~p~~---------~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~  255 (310)
T 3mv2_B          192 ETATSNFYYYEELSQ----TFPTW---------KTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKP  255 (310)
T ss_dssp             STTTHHHHHHHHHHT----TSCSH---------HHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHH
T ss_pred             ccHHHHHHHHHHHHH----hCCCc---------ccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCH
Confidence            389999999999877    33321         01335556   899999999999999988876          58999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 015006          270 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  303 (414)
Q Consensus       270 ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~  303 (414)
                      .++.++..+...+|+  +|.+.+.++.+++|++.
T Consensus       256 ~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp  287 (310)
T 3mv2_B          256 TFLANQITLALMQGL--DTEDLTNQLVKLDHEHA  287 (310)
T ss_dssp             HHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred             HHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence            999999999999998  99999999999999993

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.49  E-value=0.00087  Score=56.71  Aligned_cols=101  Identities=15%  Similarity=0.123  Sum_probs=76.7

Q ss_pred             HHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--
Q 015006          189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP--  266 (414)
Q Consensus       189 ~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp--  266 (414)
                      +.+....++..+.|..|+..+..++..... ++.-     ..-.....++..+|.+++..++|..|...|.+||.+..  
T Consensus        23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~-~~~~-----~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l   96 (167)
T 3ffl_A           23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNN-NPEL-----FSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKAL   96 (167)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-STTS-----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhcC-Cccc-----ccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH
Confidence            445666778889999999999998885432 1110     00123466888999999999999999999999975531  


Q ss_pred             -Cc----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015006          267 -AH----------------------VKGLYRRGMAYMALGEFEEAQRDFEMM  295 (414)
Q Consensus       267 -~~----------------------~ka~~r~g~a~~~l~~~~eA~~~~~~a  295 (414)
                       .+                      +...|+.|.||.+++++++|+..++..
T Consensus        97 ~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I  148 (167)
T 3ffl_A           97 SKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI  148 (167)
T ss_dssp             --------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred             hcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence             11                      257799999999999999999987754

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.26  E-value=0.00064  Score=52.10  Aligned_cols=68  Identities=16%  Similarity=0.173  Sum_probs=56.6

Q ss_pred             HHHHHhhhcccccccc---HHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015006          186 AEKIRVTGNRLFKEGK---FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  262 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~---y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al  262 (414)
                      +..+...|..++-.++   ..+|...+.+||.    ++|.+           ..+++.+|..+++.|+|.+|+..+.+++
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~----~dp~~-----------~rA~~~lg~~~~~~g~y~~Ai~~w~~~l   70 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ----LEPYN-----------EAALSLIANDHFISFRFQEAIDTWVLLL   70 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH----HCcCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3445555666653333   7899999999999    78888           7788899999999999999999999999


Q ss_pred             HhCCCc
Q 015006          263 DANPAH  268 (414)
Q Consensus       263 ~~dp~~  268 (414)
                      +.+|..
T Consensus        71 ~~~p~~   76 (93)
T 3bee_A           71 DSNDPN   76 (93)
T ss_dssp             TCCCTT
T ss_pred             hhCCCC
Confidence            999974

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=97.21  E-value=0.0087  Score=58.31  Aligned_cols=126  Identities=16%  Similarity=0.161  Sum_probs=97.3

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCC-C---CC---hHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHH
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVN-P---QD---DEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEAC  258 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~-p---~~---~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~  258 (414)
                      ...+...|......|+...|+..|.+|+..+..-. +   ..   ..+...+.+.+..+...++.+++.+|++.+|+..+
T Consensus       115 f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l  194 (388)
T 2ff4_A          115 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL  194 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            34445556566667899999999999998653211 1   11   22334566777788888999999999999999999


Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------hCCCCHHHHHHHHHHH
Q 015006          259 NKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK-------VDKSSEPDATAALSKL  313 (414)
Q Consensus       259 ~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~-------l~P~n~~~~~~~l~~~  313 (414)
                      ..++..+|-+-.++..+-.||...|+..+|++.|+++-+       ++|.  +..+.....+
T Consensus       195 ~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~--~~l~~l~~~i  254 (388)
T 2ff4_A          195 EALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG--PTLRALNERI  254 (388)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC--HHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHH
Confidence            999999999999999999999999999999999988744       4776  4455544443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.09  E-value=0.0029  Score=59.59  Aligned_cols=64  Identities=17%  Similarity=0.138  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 015006          237 LHLNVAACLLKLGECRKSIEACNKVLDANP--AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK  300 (414)
Q Consensus       237 ~~~N~a~~~~kl~~~~~A~~~~~~al~~dp--~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P  300 (414)
                      .+..+|.++...|++++|+..|.++|..+|  .+..++...+++++.+|+.+.|.+.++++.+.+|
T Consensus       102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~  167 (310)
T 3mv2_B          102 ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIE  167 (310)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence            446799999999999999999999999997  8999999999999999999999999999999998

>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}

Probab=97.07  E-value=9.7e-05  Score=62.96  Aligned_cols=34  Identities=12%  Similarity=-0.130  Sum_probs=27.5

Q ss_pred             CccccCCcCcEEEEEEcCCCcCC---------CCCCCCCCCCC
Q 015006            1 MGIGTMTREEKAVIYVTSQYLTP---------SPLMPVVEGCE   34 (414)
Q Consensus         1 ~~~~~m~~Ge~~~~~i~~~~~~g---------~~~~~~ip~~~   34 (414)
                      .||.+|++||+++|+|||+||||         +...+.+|++.
T Consensus        74 ~gl~~M~~Ge~~~~~ipp~laYG~p~v~~~~r~~~~~~~p~~~  116 (165)
T 2lkn_A           74 TIVCTMREGEIAQFLCDIKHVVLYPLVAKSLRNIAVGKDPLEG  116 (165)
T ss_dssp             HHHTTCCTTCEEEEECCHHHHSSHHHHHHHHTTGGGSSTTTTT
T ss_pred             HHHhcCccCceEEEEECHHHhcCCcchhhhhhhccccCCCccc
Confidence            37899999999999999999999         23346666654

>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A

Probab=96.97  E-value=0.00094  Score=66.12  Aligned_cols=72  Identities=18%  Similarity=0.159  Sum_probs=59.5

Q ss_pred             CCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCCeEEEEecCCCccccCCCCCCCC
Q 015006           75 LHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVP  154 (414)
Q Consensus        75 ~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~~ip  154 (414)
                      ..||.|+|+|+|+.   +|..|..+.    +.++.|.+|.|.  + |+.+|.+|++||...|.+.    |          
T Consensus       156 ~~gD~V~id~~~~~---dG~~~~~~~----~~~~~l~~g~~~--~-fe~~liG~k~Ge~~~~~vt----F----------  211 (433)
T 3gty_X          156 EAGDLVRVNMEVYN---EEGKKLTSR----EYEYVISEDEDR--P-FVKDLVGKKKGDVVEIERE----Y----------  211 (433)
T ss_dssp             CTTSEEEEEEEEEC---TTSCEEEEE----EEEEECCSSCCC--T-THHHHTTCCTTCEEEEEEE----E----------
T ss_pred             CCCCEEEEEEEEEE---CCEECcCCC----CCCeEEEecCCc--h-HHHHhCCCCCCceEEEEEe----e----------
Confidence            47999999999983   488885443    468899999987  3 9999999999999999983    2          


Q ss_pred             CCcceEEEEEEcccCC
Q 015006          155 EGAHIQWEIELLGFEK  170 (414)
Q Consensus       155 ~~~~l~~eieL~~~~~  170 (414)
                      +|.+..|.|+|.++..
T Consensus       212 aGk~a~F~VtV~~Ik~  227 (433)
T 3gty_X          212 EGKKYTYKLEVEEVYK  227 (433)
T ss_dssp             TTEEEEEEEEEEEEEE
T ss_pred             CCCeEEEEEEEEEEEE
Confidence            4678999999998865

>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1

Probab=96.94  E-value=0.00024  Score=56.67  Aligned_cols=39  Identities=23%  Similarity=0.216  Sum_probs=31.2

Q ss_pred             ccccCCcCcEEEEEEc-CCCcCCCCCCCCCCCCCeeeEEEEeeEE
Q 015006            2 GIGTMTREEKAVIYVT-SQYLTPSPLMPVVEGCEEVHFEVELVHL   45 (414)
Q Consensus         2 ~~~~m~~Ge~~~~~i~-~~~~~g~~~~~~ip~~~~l~~~vel~~~   45 (414)
                      ||.+|++||+..|.|+ |+. ||..+    .++++|+|+|+|+++
T Consensus        73 ~L~Gmk~Ge~~~v~i~fP~~-Yg~~~----~~g~~l~F~V~l~~V  112 (113)
T 1hxv_A           73 GLIAMKVNQKKTLALTFPSD-YHVKE----LQSKPVTFEVVLKAI  112 (113)
T ss_dssp             HHHTSCSSEEEEECCCCCTT-SSSSG----GGSCCCEEEEEECCB
T ss_pred             HHCCCCCCCEEEEEEeCchh-hCcCC----CCCCEEEEEEEEEEE
Confidence            6889999999999995 443 77643    356999999999864

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}

Probab=96.88  E-value=0.0015  Score=56.09  Aligned_cols=24  Identities=8%  Similarity=-0.101  Sum_probs=22.5

Q ss_pred             ccccCCcCcEEEEEEcCCCcCCCC
Q 015006            2 GIGTMTREEKAVIYVTSQYLTPSP   25 (414)
Q Consensus         2 ~~~~m~~Ge~~~~~i~~~~~~g~~   25 (414)
                      ||.+|++||+..|.|||+.|||..
T Consensus        48 aL~Gm~~Ge~~~v~ippe~aYG~~   71 (171)
T 2k8i_A           48 ALEGHEVGDKFDVAVGANDAYGQY   71 (171)
T ss_dssp             HHTTCCTTCEEEEEEETTTSSCCC
T ss_pred             HHcCCCCCCEEEEEECcHHhcCCC
Confidence            689999999999999999999975

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.58  E-value=0.016  Score=46.69  Aligned_cols=43  Identities=14%  Similarity=0.150  Sum_probs=37.8

Q ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 015006          234 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRG  276 (414)
Q Consensus       234 ~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g  276 (414)
                      +..+++.+|.+++|+|+|..|+.+|+.+|+++|+|..|.--+.
T Consensus        73 ~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~  115 (126)
T 1nzn_A           73 QRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELER  115 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            3568889999999999999999999999999999988765443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=96.50  E-value=0.00094  Score=65.96  Aligned_cols=52  Identities=15%  Similarity=0.059  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015006          236 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMM  295 (414)
Q Consensus       236 ~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~a  295 (414)
                      ..+.++|.+++..|.|++|+..+.++        ..|.++|.++.++|+|++|++.+++|
T Consensus       123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA  174 (449)
T 1b89_A          123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA  174 (449)
T ss_dssp             --------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc
Confidence            48899999999999999999999977        47899999999999999999999999

>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A

Probab=96.36  E-value=0.0021  Score=57.73  Aligned_cols=25  Identities=12%  Similarity=-0.025  Sum_probs=23.0

Q ss_pred             ccccCCcCcEEEEEEcCCCcCCCCC
Q 015006            2 GIGTMTREEKAVIYVTSQYLTPSPL   26 (414)
Q Consensus         2 ~~~~m~~Ge~~~~~i~~~~~~g~~~   26 (414)
                      ||.+|++||+..|.|||++|||...
T Consensus        60 aL~Gm~vGek~~v~Ippe~AYGe~~   84 (231)
T 3prb_A           60 AILEMDVGEEREVVLPPEKAFGKRD   84 (231)
T ss_dssp             HHHTCCTTCEEEEEECGGGTTCCCC
T ss_pred             HHcCCCCCCEEEEEeCcHHhcCCCC
Confidence            6889999999999999999999854

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.30  E-value=0.011  Score=47.90  Aligned_cols=43  Identities=12%  Similarity=0.062  Sum_probs=37.7

Q ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 015006          234 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRG  276 (414)
Q Consensus       234 ~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g  276 (414)
                      +..+++-+|.+++|+|+|..|+.+|+.+|+++|+|..|.--+.
T Consensus        77 ~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~  119 (134)
T 3o48_A           77 RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  119 (134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence            3568888999999999999999999999999999988764443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.28  E-value=0.018  Score=47.37  Aligned_cols=41  Identities=10%  Similarity=0.024  Sum_probs=36.6

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 015006          235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRR  275 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~  275 (414)
                      ..+++.+|.+++|+|+|..|+.+|+.+|+++|+|..|.--+
T Consensus        77 RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk  117 (144)
T 1y8m_A           77 RECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  117 (144)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            45888899999999999999999999999999998775443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.04  E-value=0.012  Score=49.61  Aligned_cols=94  Identities=13%  Similarity=0.171  Sum_probs=61.6

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCCh--------HHHH--HHhhhhhHHHHHHHHHHHHcCCHHHH
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDD--------EEGK--VFVGKRNLLHLNVAACLLKLGECRKS  254 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~--------~e~~--~~~~~~~~~~~N~a~~~~kl~~~~~A  254 (414)
                      .++.+.-.|+.+|..++|.+|...|++||.....+.-...        ....  .....-..+.+.+|.||++++++.+|
T Consensus        62 ~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~A  141 (167)
T 3ffl_A           62 KYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDA  141 (167)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHH
Confidence            4677788999999999999999999999986653211000        0000  00001135778899999999999999


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHH
Q 015006          255 IEACNKVLDANPAHVKGLYRRGMAY  279 (414)
Q Consensus       255 ~~~~~~al~~dp~~~ka~~r~g~a~  279 (414)
                      +...+.+ -...-+++.-.-+|+.|
T Consensus       142 i~~Le~I-p~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          142 IAILDGI-PSRQRTPKINMLLANLY  165 (167)
T ss_dssp             HHHHHTS-CGGGCCHHHHHHHHHHC
T ss_pred             HHHHhcC-CchhcCHHHHHHHHHHh
Confidence            9887653 11123566666666544

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=95.97  E-value=0.013  Score=54.35  Aligned_cols=62  Identities=18%  Similarity=0.233  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 015006          251 CRKSIEACNKVLDANPA--HVKGLYRRGMAYMAL-----GEFEEAQRDFEMMMKVDKSSEPDATAALSK  312 (414)
Q Consensus       251 ~~~A~~~~~~al~~dp~--~~ka~~r~g~a~~~l-----~~~~eA~~~~~~al~l~P~n~~~~~~~l~~  312 (414)
                      ...|....++||++||+  +..||.-+|..|..+     |+.+.|.+.|++||+++|+....+...+..
T Consensus       179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~  247 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYAD  247 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHH
Confidence            67888999999999999  677999999999996     999999999999999999642444444444

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=95.84  E-value=0.19  Score=41.61  Aligned_cols=109  Identities=6%  Similarity=-0.005  Sum_probs=80.0

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +..+-..|+.+-. +-..+-...|++|+..++   |. .   .......+.++.+.|.- ..+++.++|.+.|+.++.+.
T Consensus        20 l~llE~~g~p~~d-~~l~rlrd~YerAia~~P---p~-k---~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~h   90 (161)
T 4h7y_A           20 LLKLEKNSVPLSD-ALLNKLIGRYSQAIEALP---PD-K---YGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANC   90 (161)
T ss_dssp             HHHHHHHTCSCCH-HHHHHHHHHHHHHHHHSC---GG-G---GTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHC
T ss_pred             HHHHHHcCCCchh-hHHHHHHHHHHHHHHcCC---cc-c---cccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHh
Confidence            3333333554433 444677889999998532   22 1   22233345566666644 66799999999999999988


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 015006          266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  303 (414)
Q Consensus       266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~  303 (414)
                      ...+|.|.-.|+--...|++..|+..+.+|+.+.|...
T Consensus        91 KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~  128 (161)
T 4h7y_A           91 KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL  128 (161)
T ss_dssp             TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred             HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence            88888888889988999999999999999999999863

>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*

Probab=95.56  E-value=0.035  Score=46.75  Aligned_cols=38  Identities=13%  Similarity=-0.094  Sum_probs=32.0

Q ss_pred             ccccCCcCcEEEEEEcCCCcCCCCCCCCCCCCCeeeEEEEeeEEE
Q 015006            2 GIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLI   46 (414)
Q Consensus         2 ~~~~m~~Ge~~~~~i~~~~~~g~~~~~~ip~~~~l~~~vel~~~~   46 (414)
                      ||.+|++||+..|.|||+.|||..       +..++++|.+-.|.
T Consensus        43 aL~Gm~~Ge~~~v~ipp~~aYG~~-------~~~lv~~v~~~~f~   80 (158)
T 3cgm_A           43 ALEGREEGEAFQAHVPAEKAYGPH-------DPEGVQVVPLSAFP   80 (158)
T ss_dssp             HHTTCBTTCEEEEEECGGGTTCCC-------CGGGEEEEEGGGSC
T ss_pred             HHcCCCCCCEEEEEECcHHHcCCC-------CcceEEEEEHHHCC
Confidence            688999999999999999999964       46677888776663

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}

Probab=95.42  E-value=0.011  Score=50.50  Aligned_cols=37  Identities=5%  Similarity=-0.006  Sum_probs=30.1

Q ss_pred             ccccCCcCcEEEEEEcCCCcCCCCCCCCCCCCCeeeEEEEeeEE
Q 015006            2 GIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHL   45 (414)
Q Consensus         2 ~~~~m~~Ge~~~~~i~~~~~~g~~~~~~ip~~~~l~~~vel~~~   45 (414)
                      ||.+|++||++.|.|||++|||..       +..++.+|..-.|
T Consensus        71 aL~gm~~Ge~~~v~Ipp~~AYG~~-------~~~lv~~vp~~~f  107 (169)
T 4dt4_A           71 HLLGLKVGDKTTFSLEPDAAFGVP-------SPDLIQYFSRREF  107 (169)
T ss_dssp             HHTTCCTTCEEEEEECGGGTTCCC-------CGGGEEEEEGGGG
T ss_pred             HHcCCCCCCEEEEEEChHHhcCCC-------ChHHEEEeCHHHC
Confidence            689999999999999999999973       4556666665554

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.40  E-value=0.12  Score=54.41  Aligned_cols=59  Identities=17%  Similarity=0.172  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015006          237 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMM  295 (414)
Q Consensus       237 ~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~a  295 (414)
                      ++.-.|.-++..++|+-|+..+.+|+..-|.....|++++.+|..+|+|+.|+-.+..+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            44445666778899999999999999999999999999999999999999999876655

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}

Probab=95.14  E-value=0.015  Score=50.93  Aligned_cols=37  Identities=11%  Similarity=-0.094  Sum_probs=28.9

Q ss_pred             ccccCCcCcEEEEEEcCCCcCCCCCCCCCCCCCeeeEEEEeeEE
Q 015006            2 GIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHL   45 (414)
Q Consensus         2 ~~~~m~~Ge~~~~~i~~~~~~g~~~~~~ip~~~~l~~~vel~~~   45 (414)
                      ||.+|++||+..|.|||+.|||..       +..+++.|.+-.|
T Consensus        48 aL~Gm~vGe~~~v~Ippe~aYGe~-------~~~lV~~vp~~~f   84 (196)
T 2kfw_A           48 ALEGHEVGDKFDVAVGANDAYGQY-------DENLVQRVPKDVF   84 (196)
T ss_dssp             HHSSSCTTCEEEEECSTTTTSSCC-------CTTTCEEECGGGC
T ss_pred             HHcCCCCCCEEEEEeCcHHhcCCC-------ChhhEEEEEHHHC
Confidence            689999999999999999999974       3345555555544

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}

Probab=95.13  E-value=0.08  Score=44.16  Aligned_cols=37  Identities=8%  Similarity=-0.120  Sum_probs=29.9

Q ss_pred             ccccCCcCcEEEEEEcCCCcCCCCCCCCCCCCCeeeEEEEeeEE
Q 015006            2 GIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHL   45 (414)
Q Consensus         2 ~~~~m~~Ge~~~~~i~~~~~~g~~~~~~ip~~~~l~~~vel~~~   45 (414)
                      ||.+|++||++.|.|||+.|||..       +..+++.|..-.|
T Consensus        53 aL~gm~~Ge~~~v~ipp~~aYG~~-------~~~~v~~v~~~~f   89 (151)
T 2kr7_A           53 AVLKAQIGEWEEVVIAPEEAYGVY-------ESSYLQEVPRDQF   89 (151)
T ss_dssp             HHTTCCBTCEEEEEECGGGTTCSS-------CSCEEEEEEGGGG
T ss_pred             HHcCCCCCCEEEEEEecHHHcCCC-------CcceEEEEcHHHc
Confidence            689999999999999999999974       3456666666555

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=94.84  E-value=0.041  Score=57.54  Aligned_cols=98  Identities=10%  Similarity=0.018  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          237 LHLNVAACLLKLGECRKSIEACNKVLDA-NPAHVKGLYRRGMAYMALGE-FEEAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       237 ~~~N~a~~~~kl~~~~~A~~~~~~al~~-dp~~~ka~~r~g~a~~~l~~-~~eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                      ++...+....+.+..+.|...+.+|+.. .+...+.|...|..-...++ ++.|...|+++|+..|++ .........+.
T Consensus       436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~-~~~w~~y~~fe  514 (679)
T 4e6h_A          436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATD-GEYINKYLDFL  514 (679)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCc-hHHHHHHHHHH
Confidence            3444444445556667777777777665 33445555555555555543 777777777777777766 34432222222


Q ss_pred             HHHHHHHHHHHHHHHhhccCCC
Q 015006          315 KQRQEVESKARKQFKGLFDKKP  336 (414)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~  336 (414)
                      .... ...+.+..|.......+
T Consensus       515 ~~~~-~~~~AR~lferal~~~~  535 (679)
T 4e6h_A          515 IYVN-EESQVKSLFESSIDKIS  535 (679)
T ss_dssp             HHHT-CHHHHHHHHHHHTTTSS
T ss_pred             HhCC-CHHHHHHHHHHHHHhcC
Confidence            2221 23445667776666554

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=94.77  E-value=0.29  Score=51.13  Aligned_cols=102  Identities=11%  Similarity=-0.003  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHH
Q 015006          237 LHLNVAACLLKLG-ECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS--SEPDATAALSKL  313 (414)
Q Consensus       237 ~~~N~a~~~~kl~-~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~--n~~~~~~~l~~~  313 (414)
                      +|...|..-.+.+ +++.|...+..+|+..|+++..+...+......|+.+.|+..|++|+...|+  ....+.......
T Consensus       471 lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~f  550 (679)
T 4e6h_A          471 IYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFF  550 (679)
T ss_dssp             HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            4555555555554 4999999999999999999998888888888999999999999999999884  112333333333


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCCc
Q 015006          314 KKQRQEVESKARKQFKGLFDKKPGEI  339 (414)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (414)
                      +..... ....++.++++....+.+.
T Consensus       551 E~~~G~-~~~~~~v~~R~~~~~P~~~  575 (679)
T 4e6h_A          551 ESKVGS-LNSVRTLEKRFFEKFPEVN  575 (679)
T ss_dssp             HHHTCC-SHHHHHHHHHHHHHSTTCC
T ss_pred             HHHcCC-HHHHHHHHHHHHHhCCCCc
Confidence            333221 2345777788887777653

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=94.74  E-value=0.16  Score=49.25  Aligned_cols=99  Identities=16%  Similarity=0.134  Sum_probs=79.3

Q ss_pred             hhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----
Q 015006          191 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN-----  265 (414)
Q Consensus       191 ~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d-----  265 (414)
                      ..|..++..|+|.+|...+.+.+..+...+.         ..+...+|......|..++++.++...+.+|....     
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd---------~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~  174 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDD---------KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYC  174 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSC---------THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhcccc---------chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCC
Confidence            5788899999999999999999998765432         23557789999999999999999999998886543     


Q ss_pred             CCcHHHH--HHHHHHHH-HcCCHHHHHHHHHHHHhh
Q 015006          266 PAHVKGL--YRRGMAYM-ALGEFEEAQRDFEMMMKV  298 (414)
Q Consensus       266 p~~~ka~--~r~g~a~~-~l~~~~eA~~~~~~al~l  298 (414)
                      |....|.  .--|..++ ..++|..|-..|-.+++-
T Consensus       175 ~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~  210 (394)
T 3txn_A          175 PPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEG  210 (394)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence            1223343  34588888 899999999999999754

>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A

Probab=94.73  E-value=0.007  Score=51.05  Aligned_cols=24  Identities=13%  Similarity=0.029  Sum_probs=22.4

Q ss_pred             ccccCCcCcEEEEEEcCCCcCCCC
Q 015006            2 GIGTMTREEKAVIYVTSQYLTPSP   25 (414)
Q Consensus         2 ~~~~m~~Ge~~~~~i~~~~~~g~~   25 (414)
                      ||.+|++||++.|.|||++|||..
T Consensus        60 aL~gm~~Ge~~~v~Ipp~~aYG~~   83 (157)
T 3pr9_A           60 AILEMDVGEEREVVLPPEKAFGKR   83 (157)
T ss_dssp             HHHHCCTTCEEEEEECGGGTTCCC
T ss_pred             HHcCCCCCCEEEEEECcHHhcCCC
Confidence            688999999999999999999974

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=94.65  E-value=0.27  Score=41.56  Aligned_cols=68  Identities=15%  Similarity=0.103  Sum_probs=54.3

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hC---------------CCcHHHH-HHHHHHHHHcCCHHHHHHHHHHHH
Q 015006          235 NLLHLNVAACLLKLGECRKSIEACNKVLD--AN---------------PAHVKGL-YRRGMAYMALGEFEEAQRDFEMMM  296 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~--~d---------------p~~~ka~-~r~g~a~~~l~~~~eA~~~~~~al  296 (414)
                      ++..+--+.||.++++|..|+...+..|+  ++               |.+-..+ .-+|..+..+|+-++|+..|....
T Consensus        62 ~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf  141 (242)
T 3kae_A           62 CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSF  141 (242)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence            34444578999999999999999999992  22               3344443 446999999999999999999999


Q ss_pred             hhCCCC
Q 015006          297 KVDKSS  302 (414)
Q Consensus       297 ~l~P~n  302 (414)
                      ...|=.
T Consensus       142 ~~~~lf  147 (242)
T 3kae_A          142 GKSFLF  147 (242)
T ss_dssp             HHCCCH
T ss_pred             CCcccc
Confidence            998864

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1

Probab=94.44  E-value=0.013  Score=49.07  Aligned_cols=37  Identities=5%  Similarity=0.012  Sum_probs=30.0

Q ss_pred             ccccCCcCcEEEEEEcCCCcCCCCCCCCCCCCCeeeEEEEeeEE
Q 015006            2 GIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHL   45 (414)
Q Consensus         2 ~~~~m~~Ge~~~~~i~~~~~~g~~~~~~ip~~~~l~~~vel~~~   45 (414)
                      ||.+|++||+..|.|||++|||..       +..++++|.+..|
T Consensus        61 aL~gm~~Ge~~~v~ipp~~aYG~~-------~~~~v~~v~~~~f   97 (151)
T 1ix5_A           61 AVLDMEVGDEKTVKIPAEKAYGNR-------NEMLIQKIPRDAF   97 (151)
T ss_dssp             HHHTCCTTCCCEEEECTTTSSCSC-------CSTTBCCEETHHH
T ss_pred             HHcCCCCCCEEEEEECcHHHCCCC-------CccEEEEEEHHHc
Confidence            688999999999999999999974       3456666666555

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=94.00  E-value=0.38  Score=43.87  Aligned_cols=61  Identities=18%  Similarity=0.158  Sum_probs=57.1

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 015006          244 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP  304 (414)
Q Consensus       244 ~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~  304 (414)
                      ..++.+...+|+..+...++-+|.|++...-+-+.++-.|+|+.|..-++.+.+++|+...
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~   66 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP   66 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence            4578899999999999999999999999999999999999999999999999999998643

>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5

Probab=93.58  E-value=0.074  Score=52.42  Aligned_cols=41  Identities=20%  Similarity=0.088  Sum_probs=35.4

Q ss_pred             ccccCCcCcEEEEEEcCCCcCCCCCCCCCCCCCeeeEEEEeeEEE
Q 015006            2 GIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLI   46 (414)
Q Consensus         2 ~~~~m~~Ge~~~~~i~~~~~~g~~~~~~ip~~~~l~~~vel~~~~   46 (414)
                      ||.+|++||+..|.|++..+||...    .++.+++|+|+|.++.
T Consensus       201 ~L~G~k~Ge~~~v~v~~~~~yg~~~----lag~~~~F~V~v~~v~  241 (432)
T 1w26_A          201 GIKGHKAGEEFTIDVTFPEEYHAEN----LKGKAAKFAINLKKVE  241 (432)
T ss_dssp             HSSSCCSSCEEEEEEECCTTCSCTT----TSSCEEEEEEECCEEC
T ss_pred             HhCCCCCCCEEEEEECCchhhCCCC----CCCceEEEEEEEEEEe
Confidence            6889999999999999999999743    2558999999998864

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=93.43  E-value=0.22  Score=47.85  Aligned_cols=69  Identities=13%  Similarity=0.109  Sum_probs=55.5

Q ss_pred             hhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 015006          191 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK  270 (414)
Q Consensus       191 ~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~k  270 (414)
                      ..|..++..|+++.|+..+++|+.    ++|.            ...|.-+|.++.-.|++++|+..+.+|+.++|... 
T Consensus       282 alal~~l~~gd~d~A~~~l~rAl~----Ln~s------------~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~-  344 (372)
T 3ly7_A          282 IKAVSALVKGKTDESYQAINTGID----LEMS------------WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN-  344 (372)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHH----HCCC------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH-
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHh----cCCC------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC-
Confidence            355556678999999999999999    4432            34667789999999999999999999999999764 


Q ss_pred             HHHHHH
Q 015006          271 GLYRRG  276 (414)
Q Consensus       271 a~~r~g  276 (414)
                      .|+...
T Consensus       345 t~~~~~  350 (372)
T 3ly7_A          345 TLYWIE  350 (372)
T ss_dssp             HHHHHH
T ss_pred             hHHHHh
Confidence            454433

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=92.71  E-value=0.85  Score=45.63  Aligned_cols=80  Identities=9%  Similarity=0.020  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 015006          236 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  315 (414)
Q Consensus       236 ~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~  315 (414)
                      .++.++|....-...+..|..+|.+|+.+.|++..+|..+|......|+.-+|+-.|.++|...... +.++.+|..+-.
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf-~~a~~nL~~~f~  231 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPF-PAASTNLQKALS  231 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCC-HHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCC-hhHHHHHHHHHH
Confidence            4667788777777889999999999999999999999999999999999999999999999887666 567777776654


Q ss_pred             H
Q 015006          316 Q  316 (414)
Q Consensus       316 ~  316 (414)
                      +
T Consensus       232 ~  232 (497)
T 1ya0_A          232 K  232 (497)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A

Probab=92.69  E-value=0.46  Score=44.36  Aligned_cols=114  Identities=16%  Similarity=0.116  Sum_probs=71.4

Q ss_pred             HHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHc-------CCHHHHHHHHHH-
Q 015006          189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL-------GECRKSIEACNK-  260 (414)
Q Consensus       189 ~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl-------~~~~~A~~~~~~-  260 (414)
                      ....|-.+|..|+|.+|+..|+.+|..+.-+.-.+.++..+.+++...+..-+-.+.+.+       .+..+.++.+.. 
T Consensus       117 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELAAYF  196 (325)
T 3mv2_A          117 KMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELAAYF  196 (325)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHG
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence            345899999999999999999999987765555666666666665554432222222222       122222222111 


Q ss_pred             -HHHhCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          261 -VLDANPAHV-KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       261 -al~~dp~~~-ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                       -..+.|.+- -++..-=...++.++|--|....++.|++.|..
T Consensus       197 T~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~  240 (325)
T 3mv2_A          197 TKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSG  240 (325)
T ss_dssp             GGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS
T ss_pred             ccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH
Confidence             123344433 333333345678899999999999999999974

>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=92.58  E-value=1  Score=42.07  Aligned_cols=113  Identities=14%  Similarity=0.131  Sum_probs=73.0

Q ss_pred             HHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHc--CCH-----HHHHHHHHHH
Q 015006          189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL--GEC-----RKSIEACNKV  261 (414)
Q Consensus       189 ~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl--~~~-----~~A~~~~~~a  261 (414)
                      ....|-.+|..|+|.+|+..|+.+|..+.-+.-.+.++..+.+++...+..-+-.+.+.+  +..     +.....++-+
T Consensus       105 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~lELA  184 (320)
T 3mkr_B          105 RLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRICEMA  184 (320)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHH
Confidence            446799999999999999999999998776666676666666666555433222222222  211     2222222222


Q ss_pred             -----HHhCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015006          262 -----LDANPAHVK-GLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  301 (414)
Q Consensus       262 -----l~~dp~~~k-a~~r~g~a~~~l~~~~eA~~~~~~al~l~P~  301 (414)
                           ..+.|.+-- ++..-=...++.++|--|....++.|++.|.
T Consensus       185 AYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~  230 (320)
T 3mkr_B          185 AYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK  230 (320)
T ss_dssp             HHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred             HHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence                 233444433 3333334566789999999999999999886

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.34  E-value=0.28  Score=48.16  Aligned_cols=101  Identities=16%  Similarity=0.036  Sum_probs=77.5

Q ss_pred             HHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Q 015006          189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN---  265 (414)
Q Consensus       189 ~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d---  265 (414)
                      +...|.-+++.|++..|++.|.++...+...            .....++++...+++..++|..+.....++..+-   
T Consensus       134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~------------~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~  201 (429)
T 4b4t_R          134 WINLGEYYAQIGDKDNAEKTLGKSLSKAIST------------GAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG  201 (429)
T ss_dssp             CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCC------------CSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCh------------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC
Confidence            4567888889999999999999988865321            1246788889999999999999999999986542   


Q ss_pred             CC-cH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015006          266 PA-HV--KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  301 (414)
Q Consensus       266 p~-~~--ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~  301 (414)
                      ++ ..  +.....|.+++..++|..|...|..++.-...
T Consensus       202 ~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~  240 (429)
T 4b4t_R          202 GDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTS  240 (429)
T ss_dssp             CCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred             CCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCc
Confidence            21 12  33445677788899999999999888766443

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=90.92  E-value=2.8  Score=38.14  Aligned_cols=63  Identities=17%  Similarity=0.263  Sum_probs=52.0

Q ss_pred             ccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 015006          194 NRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG  271 (414)
Q Consensus       194 n~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka  271 (414)
                      ..+++.|+...|+......++    ..|.+           ..+..-+...+.-.|+|++|...++.+.+++|.....
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR----~~P~d-----------a~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~   67 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIK----ASPKD-----------ASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG   67 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHH----TCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHH----hCCcC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence            467899999999999999999    78888           3444445555666899999999999999999987654

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=90.13  E-value=0.25  Score=36.62  Aligned_cols=41  Identities=29%  Similarity=0.296  Sum_probs=35.0

Q ss_pred             Cchhh-hhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcc
Q 015006          177 LSFDG-IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFN  217 (414)
Q Consensus       177 ~~~~e-~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~  217 (414)
                      |+..+ .+..|..+..+|...=+.|+|.+|+.+|..|+.+|.
T Consensus         1 M~~~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~   42 (83)
T 2v6y_A            1 MSAQVMLEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLS   42 (83)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            34444 677899999999999999999999999999999764

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=89.90  E-value=0.44  Score=50.15  Aligned_cols=59  Identities=24%  Similarity=0.297  Sum_probs=50.2

Q ss_pred             HHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015006          188 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV  261 (414)
Q Consensus       188 ~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~a  261 (414)
                      -+..++..+..+|+|+.|+.+-++|+.    +.|.+           ..++..||.||+++++|+.|+-..+-+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~----~aPse-----------F~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTE----LALDS-----------FESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSSC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHh----cCchh-----------hHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            355667777889999999999999999    67776           679999999999999999999766554

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=87.60  E-value=0.57  Score=37.09  Aligned_cols=42  Identities=21%  Similarity=0.275  Sum_probs=36.0

Q ss_pred             CCchh-hhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcc
Q 015006          176 GLSFD-GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFN  217 (414)
Q Consensus       176 ~~~~~-e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~  217 (414)
                      .|+.. ..+..|..+..+|...=+.|+|.+|+.+|..|+.+|.
T Consensus         7 ~m~~~~~~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~   49 (117)
T 2cpt_A            7 GMSSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFL   49 (117)
T ss_dssp             CSCCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             cCCccHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            45555 6788899999999999999999999999999999653

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=87.42  E-value=7.6  Score=38.51  Aligned_cols=108  Identities=13%  Similarity=-0.024  Sum_probs=74.1

Q ss_pred             HHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHH----------HHHh-------------------hhhhHHHH
Q 015006          189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG----------KVFV-------------------GKRNLLHL  239 (414)
Q Consensus       189 ~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~----------~~~~-------------------~~~~~~~~  239 (414)
                      +...+..+...|+...|...|.+|+..     |.+..-.          ..+.                   .....++.
T Consensus       216 W~~ya~~~~~~~~~~~ar~i~erAi~~-----P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~  290 (493)
T 2uy1_A          216 YFFYSEYLIGIGQKEKAKKVVERGIEM-----SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRI  290 (493)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhC-----CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHH
Confidence            455566666788999999999999984     4432110          0000                   01124566


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCC
Q 015006          240 NVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG-EFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       240 N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~-~~~eA~~~~~~al~l~P~n  302 (414)
                      +.+....+.+..+.|...+.+| ...+.....+...|..-..++ +.+.|...|+.+++..|++
T Consensus       291 ~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~  353 (493)
T 2uy1_A          291 NHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDS  353 (493)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCC
Confidence            6666666778899999999999 433335556666666666566 5999999999999999986

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=86.82  E-value=6.5  Score=39.00  Aligned_cols=54  Identities=7%  Similarity=-0.005  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 015006          203 ELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGL  272 (414)
Q Consensus       203 ~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~  272 (414)
                      ..+...|.+|+..    .|..           ..++.+.|..+...++.+.|...+.+|+.. |.+..-+
T Consensus       196 ~Rv~~~ye~al~~----~p~~-----------~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~  249 (493)
T 2uy1_A          196 SRMHFIHNYILDS----FYYA-----------EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLS  249 (493)
T ss_dssp             HHHHHHHHHHHHH----TTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHH
T ss_pred             HHHHHHHHHHHHc----CCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHH
Confidence            3455667777763    2333           568888999999999999999999999999 9875433

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=86.78  E-value=6.8  Score=38.98  Aligned_cols=96  Identities=9%  Similarity=0.027  Sum_probs=68.5

Q ss_pred             hhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHH
Q 015006          192 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN-PAHVK  270 (414)
Q Consensus       192 ~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d-p~~~k  270 (414)
                      .-+.+.+.|++++|...|.+....  .+.|+            ...|+.+-.+|.+.|++++|...+....+.. ..+..
T Consensus       111 lI~~~~~~g~~~~A~~l~~~M~~~--g~~Pd------------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~  176 (501)
T 4g26_A          111 GARLAVAKDDPEMAFDMVKQMKAF--GIQPR------------LRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEP  176 (501)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHT--TCCCC------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHc--CCCCc------------cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHH
Confidence            334566778888888888776651  12222            4567777778888888888888888876543 23567


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCC
Q 015006          271 GLYRRGMAYMALGEFEEAQRDFEMMMKV--DKS  301 (414)
Q Consensus       271 a~~r~g~a~~~l~~~~eA~~~~~~al~l--~P~  301 (414)
                      .|..+-.++.+.|++++|.+.|++.-+.  .|+
T Consensus       177 ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps  209 (501)
T 4g26_A          177 ELAALLKVSMDTKNADKVYKTLQRLRDLVRQVS  209 (501)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBC
T ss_pred             HHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcC
Confidence            7778888888888888888888877653  555

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=85.34  E-value=0.6  Score=34.50  Aligned_cols=38  Identities=24%  Similarity=0.242  Sum_probs=33.9

Q ss_pred             hhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcc
Q 015006          180 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFN  217 (414)
Q Consensus       180 ~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~  217 (414)
                      ...+..|..+..+|...=+.|+|.+|+.+|..|+.+|.
T Consensus        13 ~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~   50 (83)
T 2w2u_A           13 VMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLA   50 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            45667899999999999999999999999999999764

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=84.59  E-value=7.1  Score=38.23  Aligned_cols=105  Identities=13%  Similarity=0.088  Sum_probs=75.9

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD-  263 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~-  263 (414)
                      .|.-....++.++..|+|.+|.........-....  .+       ...+..+++-....|+..++|.+|....+++.. 
T Consensus       136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~--~~-------~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~  206 (445)
T 4b4t_P          136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGS--ME-------MSEKIQFILEQMELSILKGDYSQATVLSRKILKK  206 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS--SC-------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc--cc-------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            45555667788889999999999988876532211  11       223456777788889999999999999998732 


Q ss_pred             --hCCC--cHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006          264 --ANPA--HVKG--LYRRGMAYMALGEFEEAQRDFEMMMKV  298 (414)
Q Consensus       264 --~dp~--~~ka--~~r~g~a~~~l~~~~eA~~~~~~al~l  298 (414)
                        -.+.  ..++  +.-.|..+...++|.+|..+|..++..
T Consensus       207 ~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          207 TFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             hcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence              2222  2344  445688888899999999999988865

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=83.90  E-value=9.8  Score=37.83  Aligned_cols=92  Identities=9%  Similarity=0.061  Sum_probs=72.4

Q ss_pred             ccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHH
Q 015006          196 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN-PAHVKGLYR  274 (414)
Q Consensus       196 ~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d-p~~~ka~~r  274 (414)
                      ..+.+....|...|.+....  .+.|+            ...|+.+-.+|.+.|++++|+..+....... ..+...|--
T Consensus        80 ~~~~~~l~~A~~lf~~M~~~--G~~Pd------------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~  145 (501)
T 4g26_A           80 SSPNPGLSRGFDIFKQMIVD--KVVPN------------EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP  145 (501)
T ss_dssp             SSCCHHHHHHHHHHHHHHHT--TCCCC------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             hhhcchHHHHHHHHHHHHHh--CCCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehH
Confidence            34566788888888876651  12332            5678889999999999999999999887643 236788888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhh--CCC
Q 015006          275 RGMAYMALGEFEEAQRDFEMMMKV--DKS  301 (414)
Q Consensus       275 ~g~a~~~l~~~~eA~~~~~~al~l--~P~  301 (414)
                      +=.+|...|++++|.+.|....+.  .|+
T Consensus       146 lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd  174 (501)
T 4g26_A          146 ALFGFCRKGDADKAYEVDAHMVESEVVPE  174 (501)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCCC
Confidence            889999999999999999998765  565

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=83.69  E-value=0.75  Score=34.07  Aligned_cols=41  Identities=15%  Similarity=0.112  Sum_probs=34.8

Q ss_pred             CchhhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcc
Q 015006          177 LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFN  217 (414)
Q Consensus       177 ~~~~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~  217 (414)
                      |+....+..|..+..+|...=+.|+|.+|+.+|..|+.+|.
T Consensus         4 m~~~~~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~   44 (85)
T 2v6x_A            4 MSTGDFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLM   44 (85)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            44455677888999999999999999999999999999654

>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A

Probab=83.68  E-value=0.77  Score=44.47  Aligned_cols=41  Identities=20%  Similarity=0.068  Sum_probs=31.4

Q ss_pred             ccccCCcCcEEEEEEcCCCcCCCCCCCCCCCCCeeeEEEEeeEEE
Q 015006            2 GIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLI   46 (414)
Q Consensus         2 ~~~~m~~Ge~~~~~i~~~~~~g~~~~~~ip~~~~l~~~vel~~~~   46 (414)
                      ||.+|++||+..|.|+.--.||...    .+|.+++|+|+|.++.
T Consensus       204 ~L~Gmk~Ge~~~v~v~fp~dy~~~~----laGk~~~F~V~v~~i~  244 (392)
T 1t11_A          204 GIVGKTKGMEFVIDVTFPEDYHAEN----LKGKAAKFAIKVNKVE  244 (392)
T ss_dssp             GTTTCCSSCCCCEEEECCTTCSCTT----TSSCEEEECCCEEEEE
T ss_pred             HhCCCCCCCEEEEEEeCccccccCC----CCCCeEEEEEEEEEEE
Confidence            6899999999999996323455422    3578999999998864

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=82.58  E-value=1.4  Score=33.20  Aligned_cols=39  Identities=15%  Similarity=0.117  Sum_probs=33.3

Q ss_pred             hhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhccc
Q 015006          180 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  218 (414)
Q Consensus       180 ~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~  218 (414)
                      ...+..|..+..+|...=+.|+|.+|+.+|..|+.+|..
T Consensus         9 ~~~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~   47 (93)
T 1wfd_A            9 DSDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQ   47 (93)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            345667888899999999999999999999999997643

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=82.26  E-value=2.8  Score=35.65  Aligned_cols=81  Identities=12%  Similarity=-0.013  Sum_probs=44.7

Q ss_pred             HHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 015006          187 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  266 (414)
Q Consensus       187 ~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp  266 (414)
                      ..++..|......|++.-|.++|.++-.+                       ..+...|.-.|+-+.-....+.+..-. 
T Consensus        35 ~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~-----------------------~~L~~Ly~~tg~~e~L~kla~iA~~~g-   90 (177)
T 3mkq_B           35 ITWERLIQEALAQGNASLAEMIYQTQHSF-----------------------DKLSFLYLVTGDVNKLSKMQNIAQTRE-   90 (177)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHTTCH-----------------------HHHHHHHHHHTCHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHhCCH-----------------------HHHHHHHHHhCCHHHHHHHHHHHHHCc-
Confidence            35777777777777777777777765441                       112233333444444333333332221 


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015006          267 AHVKGLYRRGMAYMALGEFEEAQRDFEMM  295 (414)
Q Consensus       267 ~~~ka~~r~g~a~~~l~~~~eA~~~~~~a  295 (414)
                      +    +.....+++.+|+++++++.|.+.
T Consensus        91 ~----~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           91 D----FGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             C----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             c----HHHHHHHHHHcCCHHHHHHHHHHC
Confidence            1    122245677778888887777543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	414
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	2e-17
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	6e-15
d1kt1a3	115	d.26.1.1 (A:139-253) FKBP51, N-terminal domains {M	8e-15
d1r9ha_	118	d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabd	2e-14
d1q1ca1	120	d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Hu	6e-13
d1kt1a2	111	d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Mo	7e-12
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	7e-12
d1q1ca2	117	d.26.1.1 (A:141-257) FKBP52, N-terminal domains {H	8e-12
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	2e-11
d1pbka_	116	d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId:	5e-11
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	1e-10
d1fd9a_	204	d.26.1.1 (A:) Macrophage infectivity potentiator p	3e-10
d1yata_	113	d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeas	1e-09
d2ppna1	107	d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12)	4e-09
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	6e-09
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	1e-08
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	1e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-08
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-07
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	5e-08
d1q6ha_	210	d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	6e-08
d1jvwa_	160	d.26.1.1 (A:) Macrophage infectivity potentiator p	2e-07
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	9e-06
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	2e-05
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	4e-05
d1u79a_	125	d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis tha	5e-05
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	6e-05
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	2e-04
d2ff4a2	179	a.118.8.3 (A:105-283) Probable regulatory protein	3e-04
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	5e-04
d2pqrb1	124	a.118.8.1 (B:5-128) Mitochondria fission protein F	6e-04
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	0.002
d1ix5a_	151	d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcu	0.002
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	0.003

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 77.3 bits (189), Expect = 2e-17
 Identities = 47/160 (29%), Positives = 81/160 (50%), Gaps = 1/160 (0%)

Query: 177 LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNL 236
           +     +++A  ++  G   FK GK+  A  +Y K++          ++E K        
Sbjct: 6   MDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLA 65

Query: 237 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 296
             LN+A C LKL E  K++E C+K L  + A+ KGLYRRG A + + EFE A+ DFE ++
Sbjct: 66  AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL 125

Query: 297 KVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKP 336
           +V+  +   A   +   +K+ +E   + R+ +  +F K  
Sbjct: 126 EVNPQN-KAARLQIFMCQKKAKEHNERDRRTYANMFKKFA 164

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.1 bits (170), Expect = 6e-15
 Identities = 43/158 (27%), Positives = 92/158 (58%), Gaps = 1/158 (0%)

Query: 177 LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNL 236
           ++ +  ++++  ++  G   FKEGK++ A  +Y+K++    + +   +EE +     R  
Sbjct: 4   MNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLA 63

Query: 237 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 296
            HLN+A C LKL     +IE+CNK L+ +  + KGL RRG A++A+ +FE A+ DF+ ++
Sbjct: 64  SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVL 123

Query: 297 KVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDK 334
           ++  ++   A   L+  +++ +   ++ +K +  +F++
Sbjct: 124 QLYPNN-KAAKTQLAVCQQRIRRQLAREKKLYANMFER 160

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 115

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 68.2 bits (166), Expect = 8e-15
 Identities = 25/122 (20%), Positives = 46/122 (37%), Gaps = 11/122 (9%)

Query: 50  DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 109
           D+L DG +I+R  R G+G      P   + + +H +G                 +G+   
Sbjct: 3   DLLEDGGIIRRTKRRGEGY---SNPNEGARVQIHLEGRCGGRVFDCRDVAFTVGEGED-- 57

Query: 110 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAY-DKFLRPANVPEGAHIQWEIELLGF 168
                  +P G +  +  M   E  ++   P Y + +       +   A + +E+ L  F
Sbjct: 58  -----HDIPIGIDKALEKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSF 112

Query: 169 EK 170
           EK
Sbjct: 113 EK 114

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Length = 118

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 67.0 bits (163), Expect = 2e-14
 Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 7/116 (6%)

Query: 53  GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSS 112
            DG ++K   ++G+G      P   + + VHY G L N  K         + G    F+ 
Sbjct: 8   KDGGVLKLIKKEGQGV---VKPTTGTTVKVHYVGTLENGTKFDSSR----DRGDQFSFNL 60

Query: 113 GEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF 168
           G G V +G+++ V  M  GE+A  T   DY Y     P  +P GA + +E+EL  +
Sbjct: 61  GRGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEW 116

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.8 bits (152), Expect = 6e-13
 Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 7/118 (5%)

Query: 53  GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSS 112
            D  ++K   R+G G    + P+    + VHY G LL+  K      R D          
Sbjct: 9   QDEGVLKVIKREGTGT---EMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFD----L 61

Query: 113 GEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEK 170
           G+G V + +++ +  M  GE+  +TC P+YAY     P  +P  A + +E+EL  F+ 
Sbjct: 62  GKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKG 119

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 111

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 59.8 bits (144), Expect = 7e-12
 Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 7/116 (6%)

Query: 54  DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 113
           D  ++K   R G GE   + P+    + VHY G L N +K         +  +P  FS G
Sbjct: 3   DRGVLKIVKRVGHGE---ETPMIGDRVYVHYNGKLANGKKFDSSH----DRNEPFVFSIG 55

Query: 114 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 169
           +G V + +++ V  M  GEI  + C P+YAY        +P  A + +E+ELL F+
Sbjct: 56  KGQVIKAWDIGVATMKKGEICHLLCKPEYAYGATGSLPKIPSNATLFFEVELLDFK 111

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 60.8 bits (146), Expect = 7e-12
 Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 2/144 (1%)

Query: 177 LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNL 236
            + +  +  A  I+  GN  FK+ +   A  KY++ L  F H    DD+          +
Sbjct: 8   YTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 67

Query: 237 -LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMM 295
             +LN+A C  K  +  K+I+  +KVL  +  +VK LY+ G+A M  G  EEA+ +    
Sbjct: 68  SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA 127

Query: 296 MKVDKSSEPDATAALSKLKKQRQE 319
             ++ ++  D   +      + +E
Sbjct: 128 ASLNPNN-LDIRNSYELCVNKLKE 150

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (144), Expect = 8e-12
 Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 11/121 (9%)

Query: 54  DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 113
           DG +I+R    G+G      P   +++ V  +G   ++            +G+ L+    
Sbjct: 7   DGGIIRRIQTRGEGY---AKPNEGAIVEVALEGYYKDKLFDQRELRFEIGEGENLD---- 59

Query: 114 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKF-LRPANVPEGAHIQWEIELLGFEKPK 172
              +P G E  ++ M  GE ++V   P YA+         +P  A +++E+ L  FEK K
Sbjct: 60  ---LPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAK 116

Query: 173 D 173
           +
Sbjct: 117 E 117

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.7 bits (146), Expect = 2e-11
 Identities = 37/201 (18%), Positives = 75/201 (37%), Gaps = 21/201 (10%)

Query: 185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC 244
            A++++  GNRLF   K+  A A Y + +      NP                + N A C
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAIT----RNPLVAV-----------YYTNRALC 47

Query: 245 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP 304
            LK+ +  +++  C + L+ +   VK  +  G   + +  ++EA  + +    + K    
Sbjct: 48  YLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL 107

Query: 305 ----DATAALSKLKKQRQEVESKARKQFKGLFDKKPGEISEVGIENQGED--QAAGKNEN 358
               D  +AL   KK+R     + R   +         +     E + E+  +    +E+
Sbjct: 108 NFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHED 167

Query: 359 DDSEQESDGDEAQEFHEAAAE 379
           D   +        +  +  A+
Sbjct: 168 DGHIRAQQACIEAKHDKYMAD 188

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (137), Expect = 5e-11
 Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 7/118 (5%)

Query: 56  RLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLN---EEKKVFYDTRVDNDGQPLEFSS 112
           +  K  ++ G      + P    ++   Y G L +    +  +    +   + +PL F  
Sbjct: 2   KYTKSVLKKGDKT---NFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKV 58

Query: 113 GEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRP-ANVPEGAHIQWEIELLGFE 169
           G G V  G++  +  M  GE A +   P++AY K  +P A +P  A + +E+EL+  +
Sbjct: 59  GVGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELVDID 116

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.4 bits (137), Expect = 1e-10
 Identities = 39/152 (25%), Positives = 75/152 (49%), Gaps = 2/152 (1%)

Query: 178 SFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNL- 236
             D I+  +E ++  GN  FK   +E+A  KY KVLR         ++     +    L 
Sbjct: 19  DVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALS 78

Query: 237 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 296
             LN+ AC LK+ + + ++++C + L+ +P++ K LYRR   +  L E+++A  D +   
Sbjct: 79  CVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQ 138

Query: 297 KVDKSSEPDATAALSKLKKQRQEVESKARKQF 328
           ++         A L K+K++ +  + K +  +
Sbjct: 139 EIAPED-KAIQAELLKVKQKIKAQKDKEKAAY 169

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Length = 204

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

 Score = 57.6 bits (138), Expect = 3e-10
 Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 12/137 (8%)

Query: 34  EEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEK 93
           +   F  E  +   V  +    +       +G      D       + V Y G L++   
Sbjct: 79  KGEAFLTENKNKPGVVVLPSGLQYKVINSGNGVKPGKSDT------VTVEYTGRLIDGTV 132

Query: 94  KVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANV 153
               +      G+P  F      V  G+   ++LM  G    +  P   AY        +
Sbjct: 133 FDSTE----KTGKPATF--QVSQVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRSVGGPI 186

Query: 154 PEGAHIQWEIELLGFEK 170
                + ++I L+  +K
Sbjct: 187 GPNETLIFKIHLISVKK 203

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.2 bits (127), Expect = 1e-09
 Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 7/114 (6%)

Query: 54  DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 113
           +G +   RI  G G      P    L+ +HY G L N +K         + G P + + G
Sbjct: 5   EGNVKIDRISPGDGA---TFPKTGDLVTIHYTGTLENGQKFDSSV----DRGSPFQCNIG 57

Query: 114 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLG 167
            G V +G+++ +  +  GE A +T P  YAY     P  +P  + + +++ELL 
Sbjct: 58  VGQVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFPGLIPPNSTLVFDVELLK 111

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (123), Expect = 4e-09
 Identities = 34/113 (30%), Positives = 46/113 (40%), Gaps = 7/113 (6%)

Query: 57  LIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL 116
           +    I  G G      P       VHY GML + +K      R       L    G+  
Sbjct: 2   VQVETISPGDGR---TFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFML----GKQE 54

Query: 117 VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 169
           V  G+E  V  M  G+ A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 55  VIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (123), Expect = 6e-09
 Identities = 27/142 (19%), Positives = 53/142 (37%), Gaps = 24/142 (16%)

Query: 185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC 244
           +A K +  GN  +K+  F+ A   Y+K       ++P +                N AA 
Sbjct: 3   QALKEKELGNDAYKKKDFDTALKHYDKA----KELDPTNMT-----------YITNQAAV 47

Query: 245 LLKLGECRKSIEACNKVLDANPAHV-------KGLYRRGMAYMALGEFEEAQRDFEMMMK 297
             + G+  K  E C K ++    +        K   R G +Y    ++++A   +   + 
Sbjct: 48  YFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA 107

Query: 298 VDKSSEPDATAALSKLKKQRQE 319
             ++  PD      + +K  +E
Sbjct: 108 EHRT--PDVLKKCQQAEKILKE 127

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 53.1 bits (127), Expect = 1e-08
 Identities = 16/145 (11%), Positives = 45/145 (31%), Gaps = 16/145 (11%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
                 EG+ + A     + ++     +P+D             L  +    L   G+  
Sbjct: 3   WKNALSEGQLQQALELLIEAIK----ASPKDAS-----------LRSSFIELLCIDGDFE 47

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 312
           ++ E   + +   P ++ G  +      A    ++  +       + ++ E   +     
Sbjct: 48  RADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFN 107

Query: 313 LKKQRQEVESKARKQFKGLFDKKPG 337
           L    Q+ E +  +    + + +  
Sbjct: 108 LSMVSQDYE-QVSELALQIEELRQE 131

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 47.0 bits (111), Expect = 1e-06
 Identities = 23/151 (15%), Positives = 44/151 (29%), Gaps = 13/151 (8%)

Query: 245 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP 304
            L  G+ ++++E   + + A+P                G+FE A       +K+     P
Sbjct: 6   ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 65

Query: 305 DATAALSKLKKQRQEVESKARKQFKGLFDKKPGEISEVGIENQGEDQAAGKNENDDSEQE 364
              + L  L K  Q  +  A+         +             E+        + S   
Sbjct: 66  -GASQLRHLVKAAQARKDFAQGAATAKVLGEN------------EELTKSLVSFNLSMVS 112

Query: 365 SDGDEAQEFHEAAAEAPRKGCSTAFGLPVED 395
            D ++  E      E  ++    A      D
Sbjct: 113 QDYEQVSELALQIEELRQEKGFLANDTSFSD 143

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 2e-08
 Identities = 16/104 (15%), Positives = 35/104 (33%), Gaps = 15/104 (14%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
            +R ++ G FE A+    ++ R      P +             + L +++   +     
Sbjct: 6   AHREYQAGDFEAAERHCMQLWR----QEPDNTG-----------VLLLLSSIHFQCRRLD 50

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 296
           +S       +  NP   +     G  Y   G+ +EA   +   +
Sbjct: 51  RSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHAL 94

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 5e-07
 Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 15/91 (16%)

Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
            N   ++G  E A   Y K L     V P+               H N+A+ L + G+ +
Sbjct: 312 ANIKREQGNIEEAVRLYRKALE----VFPEFAA-----------AHSNLASVLQQQGKLQ 356

Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALG 283
           +++    + +  +P         G     + 
Sbjct: 357 EALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (118), Expect = 5e-08
 Identities = 37/167 (22%), Positives = 70/167 (41%), Gaps = 19/167 (11%)

Query: 180 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHL 239
           DG +  AE+++   N  FK   +E A   Y + +                        + 
Sbjct: 4   DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIY---------------YG 48

Query: 240 NVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 299
           N +   L+      ++    + ++ +  ++KG YRR  + MALG+F  A RD+E ++KV 
Sbjct: 49  NRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK 108

Query: 300 KSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPGEISEVGIEN 346
               P    A  K ++  + V+ KA ++     + K   +  + IE+
Sbjct: 109 ----PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIES 151

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Length = 210

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

 Score = 50.6 bits (120), Expect = 6e-08
 Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 11/113 (9%)

Query: 57  LIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL 116
           L+ + +  GKGE P D       + V+YKG L++ ++     TR    G+P   S     
Sbjct: 109 LVYQVVEAGKGEAPKDSDT----VVVNYKGTLIDGKEFDNSYTR----GEP--LSFRLDG 158

Query: 117 VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 169
           V  G+   ++ +  G    +  PP+ AY K   P  +P  + + +++ELL  +
Sbjct: 159 VIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGVP-GIPPNSTLVFDVELLDVK 210

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]} Length = 160

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 48.3 bits (114), Expect = 2e-07
 Identities = 24/129 (18%), Positives = 46/129 (35%), Gaps = 7/129 (5%)

Query: 61  RIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEG 120
             +          P  D    VHY G L              +  +    +     V +G
Sbjct: 37  VFQRIARGSGKRAPAIDDKCEVHYTGRLR------DGTVFDSSRERGKPTTFRPNEVIKG 90

Query: 121 FEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDW-TGLSF 179
           +   ++LM  G+   +  P D AY        +P  + +++++EL+  +      T    
Sbjct: 91  WTEALQLMREGDRWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELISIKDGGKGRTAEEV 150

Query: 180 DGIMDEAEK 188
           D I+ +AE+
Sbjct: 151 DEILRKAEE 159

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 9e-06
 Identities = 29/133 (21%), Positives = 57/133 (42%), Gaps = 16/133 (12%)

Query: 184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 243
           ++  +++  GN+    G  + A   Y + +     ++P +              + N +A
Sbjct: 1   EQVNELKEKGNKALSVGNIDDALQCYSEAI----KLDPHNHVL-----------YSNRSA 45

Query: 244 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 303
              K G+ +K+ E   K +D  P   KG  R+  A   L  FEEA+R +E  +K + ++ 
Sbjct: 46  AYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN- 104

Query: 304 PDATAALSKLKKQ 316
           P     L  ++ +
Sbjct: 105 PQLKEGLQNMEAR 117

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 2e-05
 Identities = 18/121 (14%), Positives = 42/121 (34%), Gaps = 11/121 (9%)

Query: 195 RLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKS 254
            L+ EG     K  ++  L  F+ V                 +  N+      L    ++
Sbjct: 7   SLWNEGVLAADKKDWKGALDAFSAVQDPHSR-----------ICFNIGCMYTILKNMTEA 55

Query: 255 IEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 314
            +A  + ++ +       ++RGM Y    +++ A +D +  +   + ++      L    
Sbjct: 56  EKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQF 115

Query: 315 K 315
           K
Sbjct: 116 K 116

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (101), Expect = 4e-05
 Identities = 12/146 (8%), Positives = 34/146 (23%), Gaps = 18/146 (12%)

Query: 184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 243
               K    G    K+                      Q                +++  
Sbjct: 118 PCRVKSSQLGIISNKQTHTSAIVKPQSSSCS----YICQH-------------CLVHLGD 160

Query: 244 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 303
                 +  ++           P++ +   +  +   + G+       +   + V     
Sbjct: 161 IARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPF- 219

Query: 304 PDATAALSKLKKQRQEVESKARKQFK 329
           P A+  L K   +  E   + + ++ 
Sbjct: 220 PAASTNLQKALSKALESRDEVKTKWG 245

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 125

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 40.6 bits (94), Expect = 5e-05
 Identities = 29/122 (23%), Positives = 45/122 (36%), Gaps = 19/122 (15%)

Query: 57  LIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL 116
           L       G G   +       L+  HY G L N +          N G+PL F  G G 
Sbjct: 10  LAFCDKVVGYGPEAV----KGQLIKAHYVGKLENGKVFDSSY----NRGKPLTFRIGVGE 61

Query: 117 VPEGFEMCV------RLMLPGEIALVTCPPDYAY-----DKFLRPANVPEGAHIQWEIEL 165
           V +G++  +        ML G    +  PP+ AY             +P  + + ++IE 
Sbjct: 62  VIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEY 121

Query: 166 LG 167
           +G
Sbjct: 122 IG 123

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 40.9 bits (94), Expect = 6e-05
 Identities = 22/150 (14%), Positives = 55/150 (36%), Gaps = 15/150 (10%)

Query: 185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC 244
            A        R    G+++ A A   + +   + + P++  +     G     H  +A  
Sbjct: 8   GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFD---HAGFDAFCHAGLAEA 64

Query: 245 LLKLGECRKSIEACNKVLDANPAHVKG-----------LYRRGMAYMALGEFEEAQRDFE 293
           L  L    +++ + +K L       +            +Y R +A   LG   EA  +F+
Sbjct: 65  LAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFK 124

Query: 294 MMMKVDKSSEPDATAALSKLKKQRQEVESK 323
            ++++ +  +   T    ++ +   +  ++
Sbjct: 125 KVVEMIEERK-GETPGKERMMEVAIDRIAQ 153

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 40.7 bits (93), Expect = 2e-04
 Identities = 9/80 (11%), Positives = 22/80 (27%), Gaps = 5/80 (6%)

Query: 237 LHLNVAACLLKLGECRKSIEACNKVLDANP-----AHVKGLYRRGMAYMALGEFEEAQRD 291
            +   A   +  G   ++       L+  P     + +      G      GE   +   
Sbjct: 14  FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLAL 73

Query: 292 FEMMMKVDKSSEPDATAALS 311
            +   ++ +  +    A  S
Sbjct: 74  MQQTEQMARQHDVWHYALWS 93

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 39.1 bits (90), Expect = 3e-04
 Identities = 17/122 (13%), Positives = 30/122 (24%), Gaps = 7/122 (5%)

Query: 184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLL------ 237
                 +  G      G+FE A       LR++      D  + +        L      
Sbjct: 9   GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVL 68

Query: 238 -HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 296
            H   A   +  G     I     +   +P       +   AY       +A   +  + 
Sbjct: 69  AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 128

Query: 297 KV 298
             
Sbjct: 129 TT 130

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.6 bits (91), Expect = 5e-04
 Identities = 11/103 (10%), Positives = 26/103 (25%)

Query: 197 FKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIE 256
            +    +  +        D N  +        +   +              L    +S +
Sbjct: 204 PENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCK 263

Query: 257 ACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 299
              ++   N   +  +     A   L   +E  + F  +  VD
Sbjct: 264 ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 306

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.4 bits (87), Expect = 6e-04
 Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 12/92 (13%)

Query: 240 NVAACLLK---LGECRKSIEACNKVLDANPAHVK-GLYRRGMAYMALGEFEEAQRDFEMM 295
           N A  L+K   + + R  ++    +     +  +  LY   +    LGE+  A+R  + +
Sbjct: 40  NYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL 99

Query: 296 MKVDKSSEPDATAALSKLKKQRQEVESKARKQ 327
            +     E +     + LK     VE K +K+
Sbjct: 100 FEH----ERNNKQVGA-LKSM---VEDKIQKE 123

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 12/89 (13%), Positives = 32/89 (35%), Gaps = 7/89 (7%)

Query: 215 DFNHVNP--QDDEEGKVFV----GKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 268
           ++  ++P  Q+D    V       K   ++    A L +     ++ +     ++ N A+
Sbjct: 17  EWADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAAN 76

Query: 269 VKGLYRRGMAYMALGE-FEEAQRDFEMMM 296
               + R +   +L +   E       ++
Sbjct: 77  YTVWHFRRVLLKSLQKDLHEEMNYITAII 105

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]} Length = 151

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

 Score = 36.3 bits (83), Expect = 0.002
 Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 9/74 (12%)

Query: 82  VHYKGMLLN---------EEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGE 132
           V Y G L +         E  K       D + +PLEF  GEG + +GFE  V  M  G+
Sbjct: 10  VDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGD 69

Query: 133 IALVTCPPDYAYDK 146
              V  P + AY  
Sbjct: 70  EKTVKIPAEKAYGN 83

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 10/71 (14%), Positives = 25/71 (35%)

Query: 249 GECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATA 308
               +                +  +  G  Y++LG+ + A   F++ +  +  +  +   
Sbjct: 189 TLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRY 248

Query: 309 ALSKLKKQRQE 319
           AL +L    Q+
Sbjct: 249 ALLELSLLGQD 259

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	414
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.95
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.94
d1q1ca1	120	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.93
d1r9ha_	118	FKB-6, N-terminal domain {Caenorhabditis elegans [	99.93
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.92
d1kt1a2	111	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.91
d1yata_	113	Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyc	99.9
d2ppna1	107	FK-506 binding protein (FKBP12), an immunophilin {	99.9
d1pbka_	116	FKBP25 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1kt1a3	115	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.89
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.86
d1jvwa_	160	Macrophage infectivity potentiator protein (MIP) {	99.85
d1fd9a_	204	Macrophage infectivity potentiator protein (MIP) {	99.85
d1q1ca2	117	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.85
d1q6ha_	210	Peptidyl-prolyl cis-trans isomerase FkpA {Escheric	99.84
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.81
d1u79a_	125	FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId:	99.8
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.75
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.72
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.57
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.54
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.5
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.5
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.5
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.44
d1ix5a_	151	Archaeal FKBP {Archaeon Methanococcus thermolithot	99.4
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.33
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.31
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.29
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.28
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.26
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.25
d1hxva_	85	Trigger factor PPIase domain {Mycoplasma genitaliu	99.23
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.21
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.21
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.2
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.2
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.2
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.18
d1r9ha_	118	FKB-6, N-terminal domain {Caenorhabditis elegans [	99.13
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.11
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.11
d1kt1a2	111	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.08
d1kt1a3	115	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.08
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.06
d2ppna1	107	FK-506 binding protein (FKBP12), an immunophilin {	99.05
d1q1ca1	120	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.04
d1q1ca2	117	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.03
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.02
d1yata_	113	Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyc	99.0
d1pbka_	116	FKBP25 {Human (Homo sapiens) [TaxId: 9606]}	98.93
d1jvwa_	160	Macrophage infectivity potentiator protein (MIP) {	98.92
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.91
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.86
d1u79a_	125	FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId:	98.82
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.82
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.78
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.78
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.67
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.64
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.6
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.59
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.57
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.55
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.51
d1l1pa_	106	Trigger factor PPIase domain {Escherichia coli [Ta	98.39
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.35
d1t11a3	113	Trigger factor PPIase domain {Vibrio cholerae [Tax	98.31
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.23
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.21
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.15
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.08
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.91
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.89
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.78
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.7
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.62
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.38
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.26
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	96.93
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.6
d1hxva_	85	Trigger factor PPIase domain {Mycoplasma genitaliu	94.88
d1ix5a_	151	Archaeal FKBP {Archaeon Methanococcus thermolithot	90.43
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	90.04
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	84.53
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	83.57
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	80.61

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.95  E-value=6.2e-27  Score=202.52  Aligned_cols=164  Identities=29%  Similarity=0.458  Sum_probs=153.2

Q ss_pred             CCCCCCchhhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCH
Q 015006          172 KDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC  251 (414)
Q Consensus       172 ~~~~~~~~~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~  251 (414)
                      ++.|.|+.+|+++.|..+++.||.+|+.|+|.+|+..|++||.++................+...+|+|+|.||+++++|
T Consensus         1 ~e~~~m~~~E~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~   80 (168)
T d1kt1a1           1 KESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREY   80 (168)
T ss_dssp             CCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhc
Confidence            36799999999999999999999999999999999999999999887666666666777888889999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015006          252 RKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGL  331 (414)
Q Consensus       252 ~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  331 (414)
                      .+|+.+|+++|.++|.+++++|++|.+|..+|+|++|+.+|++|++++|+| ..+...+..+...+.++.+++++.|++|
T Consensus        81 ~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n-~~~~~~l~~~~~~~~~~~e~~kk~~~~~  159 (168)
T d1kt1a1          81 TKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN-KAARLQIFMCQKKAKEHNERDRRTYANM  159 (168)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998 7899999999999999999999999999


Q ss_pred             ccCCC
Q 015006          332 FDKKP  336 (414)
Q Consensus       332 ~~~~~  336 (414)
                      |.+..
T Consensus       160 f~~~~  164 (168)
T d1kt1a1         160 FKKFA  164 (168)
T ss_dssp             HHHHH
T ss_pred             Hhhhh
Confidence            97653

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.1e-26  Score=197.17  Aligned_cols=161  Identities=27%  Similarity=0.455  Sum_probs=151.6

Q ss_pred             CCCchhhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHH
Q 015006          175 TGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKS  254 (414)
Q Consensus       175 ~~~~~~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A  254 (414)
                      |+|+.+++++.|..+++.||.+|+.|+|.+|+..|++||.++.........+......+...+|+|+|.||+++++|.+|
T Consensus         2 ~~~~~~ek~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A   81 (170)
T d1p5qa1           2 WEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAA   81 (170)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccc
Confidence            78999999999999999999999999999999999999998877666666677778888899999999999999999999


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 015006          255 IEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDK  334 (414)
Q Consensus       255 ~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  334 (414)
                      +.+|++||.++|+++++++++|.++..+|+|++|+.+|++|++++|+| +.+...+..+.+++.++.+++++.|++||++
T Consensus        82 ~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n-~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~  160 (170)
T d1p5qa1          82 IESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN-KAAKTQLAVCQQRIRRQLAREKKLYANMFER  160 (170)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998 7899999999999999999999999999986


Q ss_pred             CC
Q 015006          335 KP  336 (414)
Q Consensus       335 ~~  336 (414)
                      ..
T Consensus       161 ~~  162 (170)
T d1p5qa1         161 LA  162 (170)
T ss_dssp             HH
T ss_pred             Hh
Confidence            53

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.3e-25  Score=182.29  Aligned_cols=115  Identities=31%  Similarity=0.622  Sum_probs=104.9

Q ss_pred             eeeec--CCCceEEEEeecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHh
Q 015006           48 VRDML--GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCV  125 (414)
Q Consensus        48 ~~dv~--~dg~~~k~i~~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l  125 (414)
                      +.|++  +|++|+|+|+++|.|.   .+|..|++|+|||++++.|  |++| +++++ ++.|++|.+|.+.+++||+.+|
T Consensus         2 ~~d~t~~~d~gv~~~i~~~G~G~---~~P~~gd~V~v~y~~~l~d--G~~f-dss~~-~~~p~~f~~g~~~~i~G~~~~l   74 (120)
T d1q1ca1           2 GVDISPKQDEGVLKVIKREGTGT---EMPMIGDRVFVHYTGWLLD--GTKF-DSSLD-RKDKFSFDLGKGEVIKAWDIAI   74 (120)
T ss_dssp             CEECCSSCSSSEEEEEEECCSSS---CCCCTTCEEEEEEEEEETT--SCEE-EESTT-SSSCEEEETTTTSSCHHHHHHH
T ss_pred             ceeccCCCCCCEEEEEEEcccCC---cCCCCCCEEEEEEEEEEcC--CCEE-Eeccc-cccceeeecCCCceeeeeeeee
Confidence            35777  6899999999999996   3467899999999999976  8988 66665 5789999999999999999999


Q ss_pred             hhcCCCCeEEEEecCCCccccCCCCCCCCCCcceEEEEEEcccC
Q 015006          126 RLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE  169 (414)
Q Consensus       126 ~~M~~GE~~~v~i~~~~~yg~~~~~~~ip~~~~l~~eieL~~~~  169 (414)
                      .+|++||++.|.|||++|||+.+.++.|||+++|+|+|+|++|+
T Consensus        75 ~~M~~Ge~~~~~ip~~laYG~~g~~~~IPp~s~LifeIeLl~v~  118 (120)
T d1q1ca1          75 ATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFK  118 (120)
T ss_dssp             TTCCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             ccccCCcEEEEEECHHHhCCCcCCCCCCCcCCcEEEEEEEEEEe
Confidence            99999999999999999999999988999999999999999875

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.93  E-value=1.1e-25  Score=182.19  Aligned_cols=113  Identities=34%  Similarity=0.594  Sum_probs=102.7

Q ss_pred             eec--CCCceEEEEeecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhh
Q 015006           50 DML--GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRL  127 (414)
Q Consensus        50 dv~--~dg~~~k~i~~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~  127 (414)
                      |++  +||+|.++|+++|+|..   .|..|+.|+|||++++.|  |++| +++++ .+.|++|.+|.+.+++||+.+|.+
T Consensus         3 d~t~~~d~Gl~~~il~~G~G~~---~p~~gd~V~v~y~~~l~d--G~v~-dss~~-~~~p~~f~~g~~~vi~G~~~~l~~   75 (118)
T d1r9ha_           3 DITPKKDGGVLKLIKKEGQGVV---KPTTGTTVKVHYVGTLEN--GTKF-DSSRD-RGDQFSFNLGRGNVIKGWDLGVAT   75 (118)
T ss_dssp             ECSTTCCSSEEEEEEECCBSSC---CCCTTCEEEEEEEEEETT--SCEE-EEHHH-HTSCEEEETTTTSSCHHHHHHHTT
T ss_pred             cccccCCCCEEEEEEECcCCCC---CCCCCCEEEEEEEEEEcC--CCEE-EEccc-cceeeeeeccCcceeeeeeeeeee
Confidence            666  79999999999999963   367999999999999876  8988 55554 578999999999999999999999


Q ss_pred             cCCCCeEEEEecCCCccccCCCCCCCCCCcceEEEEEEcccC
Q 015006          128 MLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE  169 (414)
Q Consensus       128 M~~GE~~~v~i~~~~~yg~~~~~~~ip~~~~l~~eieL~~~~  169 (414)
                      |++||++.|.|||++|||+.+.++.|||+++|+|+|+|++|.
T Consensus        76 M~~Ge~~~~~ipp~laYG~~g~~~~IPp~s~l~f~IeLl~f~  117 (118)
T d1r9ha_          76 MTKGEVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEWS  117 (118)
T ss_dssp             CCBTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             ecCCceEEEEECHHHhCCcCCCCCccCcCCcEEEEEEEEEEe
Confidence            999999999999999999999988899999999999999874

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.92  E-value=1.9e-24  Score=183.78  Aligned_cols=149  Identities=26%  Similarity=0.319  Sum_probs=132.8

Q ss_pred             CCCCCCchhhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChH-HHHHHhhhhhHHHHHHHHHHHHcCC
Q 015006          172 KDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDE-EGKVFVGKRNLLHLNVAACLLKLGE  250 (414)
Q Consensus       172 ~~~~~~~~~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~-e~~~~~~~~~~~~~N~a~~~~kl~~  250 (414)
                      ++.|.|+.+++++.|..+++.||.+|+.|+|.+|+..|++||.++......... .......+...+|+|+|.||+++++
T Consensus         3 ~~~~~~~~~e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~   82 (153)
T d2fbna1           3 KSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKD   82 (153)
T ss_dssp             CSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcc
Confidence            567899999999999999999999999999999999999999987655443322 2344556677899999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 015006          251 CRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVE  321 (414)
Q Consensus       251 ~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~  321 (414)
                      |.+|+.+|.+||+++|.+++|||++|.+|..+|+|++|+.+|++|++++|+| ..+...+..+.+++++.+
T Consensus        83 ~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n-~~~~~~l~~~~~kl~~~~  152 (153)
T d2fbna1          83 YPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN-LDIRNSYELCVNKLKEAR  152 (153)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHC
Confidence            9999999999999999999999999999999999999999999999999998 788889998888776543

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.91  E-value=3.5e-25  Score=177.54  Aligned_cols=110  Identities=36%  Similarity=0.631  Sum_probs=84.0

Q ss_pred             CCCceEEEEeecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCC
Q 015006           53 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGE  132 (414)
Q Consensus        53 ~dg~~~k~i~~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE  132 (414)
                      .|++|.++++++|.|.   .+|..|+.|+|||++++.|  |++| +++++ .+.|++|.+|.+.+++||+.+|.+|++||
T Consensus         2 ~d~Gi~~~i~~~G~g~---~~P~~gd~V~v~y~~~l~d--G~~~-dss~~-~~~p~~f~lg~~~~i~G~~~~l~~M~~Ge   74 (111)
T d1kt1a2           2 KDRGVLKIVKRVGHGE---ETPMIGDRVYVHYNGKLAN--GKKF-DSSHD-RNEPFVFSIGKGQVIKAWDIGVATMKKGE   74 (111)
T ss_dssp             CSCSCEEEC----CCS---CCCCTTCEEEEECCCCSCC----------------CEEEETTSSSSCHHHHHSTTTCCTTC
T ss_pred             CCCCeEEEEEEcccCC---cCCCCCCEEEEEEEEEECC--CCEE-EEEEe-cceeeeeecCCCcEEeeeeeeehhccCCc
Confidence            4789999999999996   3478999999999999876  8888 55555 57899999999999999999999999999


Q ss_pred             eEEEEecCCCccccCCCCCCCCCCcceEEEEEEcccC
Q 015006          133 IALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE  169 (414)
Q Consensus       133 ~~~v~i~~~~~yg~~~~~~~ip~~~~l~~eieL~~~~  169 (414)
                      +++|.|||++|||+.|.++.|||+++|+|+|+|++|+
T Consensus        75 ~~~~~ip~~layG~~g~~~~IPp~s~lif~ieLl~ik  111 (111)
T d1kt1a2          75 ICHLLCKPEYAYGATGSLPKIPSNATLFFEVELLDFK  111 (111)
T ss_dssp             CEEEEC----CCCTTTCTTTSCTTCCCEEEEEEEEEE
T ss_pred             EEEEEECHHHhCCCCCCCCcCCcCCeEEEEEEEEEEC
Confidence            9999999999999999888999999999999999873

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=1.2e-23  Score=169.09  Aligned_cols=108  Identities=32%  Similarity=0.571  Sum_probs=99.1

Q ss_pred             CCceEEEEeecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCCe
Q 015006           54 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI  133 (414)
Q Consensus        54 dg~~~k~i~~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~  133 (414)
                      ||+|.++++++|.|..   +|..||.|+|||++++.|  |++| +++++ .+.|+.|.+|.+.+++||+.+|.+|++||+
T Consensus         5 d~gl~~~~l~~G~G~~---~P~~gd~V~v~y~~~~~d--G~~~-ds~~~-~~~~~~~~~~~~~~i~G~~~~l~~M~~G~~   77 (113)
T d1yata_           5 EGNVKIDRISPGDGAT---FPKTGDLVTIHYTGTLEN--GQKF-DSSVD-RGSPFQCNIGVGQVIKGWDVGIPKLSVGEK   77 (113)
T ss_dssp             GGGCEEEEEECCCSSC---CCCTTCEEEEEEEEEETT--SCEE-EESTT-TTCCEEEETTSSSSCHHHHHHGGGCCTTCE
T ss_pred             cCCcEEEEEECccCCc---CCCCCCEEEEEEEEEEec--CcEE-ecccc-CCceEeeeeccCceeeehhhhcccccCCCE
Confidence            7889999999999963   467899999999999976  8987 56655 578999999999999999999999999999


Q ss_pred             EEEEecCCCccccCCCCCCCCCCcceEEEEEEccc
Q 015006          134 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF  168 (414)
Q Consensus       134 ~~v~i~~~~~yg~~~~~~~ip~~~~l~~eieL~~~  168 (414)
                      ++|.|||++|||..|.++.||++++|+|+|+|+++
T Consensus        78 ~~~~iP~~laYG~~g~~~~IP~~s~Lif~ieLl~I  112 (113)
T d1yata_          78 ARLTIPGPYAYGPRGFPGLIPPNSTLVFDVELLKV  112 (113)
T ss_dssp             EEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEE
T ss_pred             EEEEechHHeecCcCCCCccCcCCeEEEEEEEEEe
Confidence            99999999999999998889999999999999976

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=9.2e-24  Score=168.06  Aligned_cols=107  Identities=35%  Similarity=0.537  Sum_probs=96.9

Q ss_pred             ceEEEEeecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCCeEE
Q 015006           56 RLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIAL  135 (414)
Q Consensus        56 ~~~k~i~~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~~  135 (414)
                      +|.++++++|+|..   .|..|+.|+|||+|++.|  |++| +++++ .+.|++|.+|.+.+++||+.+|.+|++||++.
T Consensus         1 Gv~~~~l~~G~G~~---~p~~gd~V~v~y~g~l~d--G~~~-d~s~~-~~~p~~~~~g~~~~i~G~~~~l~~M~~Ge~~~   73 (107)
T d2ppna1           1 GVQVETISPGDGRT---FPKRGQTCVVHYTGMLED--GKKF-DSSRD-RNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAK   73 (107)
T ss_dssp             CEEEEEEECCCSSC---CCCTTCEEEEEEEEEETT--SCEE-EEHHH-HTSCEEEETTSCCSCHHHHHHHTTCCTTCEEE
T ss_pred             CcEEEEEECcCCcc---CCCCCCEEEEEEEEEecC--CeEE-Eeeec-cceeeeEeeCcchhheeehhhhcCccCCCEEE
Confidence            57899999999963   357899999999999976  9998 55554 57899999999999999999999999999999


Q ss_pred             EEecCCCccccCCCCCCCCCCcceEEEEEEcccC
Q 015006          136 VTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE  169 (414)
Q Consensus       136 v~i~~~~~yg~~~~~~~ip~~~~l~~eieL~~~~  169 (414)
                      |.|||++|||+.+.++.||+|++|+|+|+|++++
T Consensus        74 ~~ip~~laYG~~g~~~~IPp~s~lif~ieL~~vk  107 (107)
T d2ppna1          74 LTISPDYAYGATGHPGIIPPHATLVFDVELLKLE  107 (107)
T ss_dssp             EEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEC
T ss_pred             EEECHHHhCCCCCCCCCCCcCCeEEEEEEEEEEC
Confidence            9999999999999888899999999999999874

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.4e-23  Score=167.30  Aligned_cols=108  Identities=30%  Similarity=0.584  Sum_probs=95.6

Q ss_pred             ceEEEEeecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccCC------CCCceEEEcCCCCchHHHHHHhhhcC
Q 015006           56 RLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDN------DGQPLEFSSGEGLVPEGFEMCVRLML  129 (414)
Q Consensus        56 ~~~k~i~~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~------~~~p~~f~lG~~~v~~gle~~l~~M~  129 (414)
                      .+.|+|+++|.|.   ..|..||.|+|||++++.|  |++| |++++.      .++|++|.+|.+.+++||+.+|.+|+
T Consensus         2 ~~~k~vl~~G~G~---~~P~~gd~V~v~y~~~l~d--G~~f-dss~~~~~~~~~~~~p~~f~lg~~~~i~Gl~~~v~~M~   75 (116)
T d1pbka_           2 KYTKSVLKKGDKT---NFPKKGDVVHCWYTGTLQD--GTVF-DTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMS   75 (116)
T ss_dssp             CEEEEEEECCCSS---CCCCTTCEEEEEEEEECTT--SCEE-EECCCSSCCTTTSSCCEEEETTTTSSCHHHHHHHTTCC
T ss_pred             cceEEEEecCCCC---CCCCCCCEEEEEEEEEECC--CCEe-ecccccccccccCCCceeeeecccccccchheechhhc
Confidence            4689999999996   3468999999999999976  9988 555431      45799999999999999999999999


Q ss_pred             CCCeEEEEecCCCccccCCCC-CCCCCCcceEEEEEEcccC
Q 015006          130 PGEIALVTCPPDYAYDKFLRP-ANVPEGAHIQWEIELLGFE  169 (414)
Q Consensus       130 ~GE~~~v~i~~~~~yg~~~~~-~~ip~~~~l~~eieL~~~~  169 (414)
                      +||++.|.|||++|||+.+.+ ..||++++|+|+|+|++++
T Consensus        76 ~Ge~~~~~ip~~~ayG~~g~~~~~Ipp~s~L~feieLl~ve  116 (116)
T d1pbka_          76 KGEKARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELVDID  116 (116)
T ss_dssp             TTCEEEEEECGGGTTTTTCBGGGTBCTTCCEEEEEEEEEEC
T ss_pred             CCcEEEEEECHHHhCCccCCCCCCcCcCCeEEEEEEEEEEC
Confidence            999999999999999999875 5799999999999999874

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.89  E-value=6.2e-23  Score=165.69  Aligned_cols=109  Identities=28%  Similarity=0.527  Sum_probs=95.6

Q ss_pred             eeecCCCceEEEEeecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCC---CchHHHHHHh
Q 015006           49 RDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEG---LVPEGFEMCV  125 (414)
Q Consensus        49 ~dv~~dg~~~k~i~~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~---~v~~gle~~l  125 (414)
                      +||++||+|+|+|+++|.|.   ..|..|++|+|||+|++   +|++|+.+       ++.|.++.+   .+|+||+.+|
T Consensus         2 e~~~~D~gi~k~il~~G~G~---~~p~~gd~V~v~y~g~~---~g~~~~~~-------~~~~~~~~~~~~~vi~G~~~~l   68 (115)
T d1kt1a3           2 EDLLEDGGIIRRTKRRGEGY---SNPNEGARVQIHLEGRC---GGRVFDCR-------DVAFTVGEGEDHDIPIGIDKAL   68 (115)
T ss_dssp             EETTSSSSEEEEEEECCCCS---SCCCTTCEEEEEEEEEE---TTEEEEEE-------EEEEETTCGGGGTCCHHHHHHH
T ss_pred             CccccCCCEEEEEEEeecCC---CCCCCCCEEEEEEEEEe---CCcccccc-------ccCceeeeccccccCchhHhhh
Confidence            68999999999999999995   34679999999999996   37777432       567777764   5899999999


Q ss_pred             hhcCCCCeEEEEecCCCccccCCCCC-CCCCCcceEEEEEEcccCC
Q 015006          126 RLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEK  170 (414)
Q Consensus       126 ~~M~~GE~~~v~i~~~~~yg~~~~~~-~ip~~~~l~~eieL~~~~~  170 (414)
                      .+|++||++.|+|||++|||..+.++ .|||+++|+|+|+|++|++
T Consensus        69 ~~M~~Ge~~~v~ip~~~ayG~~g~~~~~Ipp~a~l~f~ieLl~~~k  114 (115)
T d1kt1a3          69 EKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEK  114 (115)
T ss_dssp             TTCCTTCEEEEEECGGGSSCTTCBTTTTBCTTCCEEEEEEEEEEEC
T ss_pred             ccchhhceeEEEeCHHHCcCCCCCCCCCcCcCCeEEEEEEEEEEEe
Confidence            99999999999999999999999876 6999999999999999864

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.86  E-value=1.6e-21  Score=168.03  Aligned_cols=149  Identities=27%  Similarity=0.473  Sum_probs=129.4

Q ss_pred             CchhhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCC-CChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHH
Q 015006          177 LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNP-QDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSI  255 (414)
Q Consensus       177 ~~~~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p-~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~  255 (414)
                      .+.+..+..+..++..|+.+|+.|+|..|+..|++||.++..... ........+......+++|+|.||+++++|.+|+
T Consensus        18 ~~~~~~~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai   97 (169)
T d1ihga1          18 KDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAV   97 (169)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhh
Confidence            456778888999999999999999999999999999986542211 1122333456677889999999999999999999


Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 015006          256 EACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARK  326 (414)
Q Consensus       256 ~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~~~~  326 (414)
                      .+|++||+++|+++++|+++|.+|..+|+|++|+.+|++|++++|+| ..+...|..+.++++...+++++
T Consensus        98 ~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n-~~~~~~l~~~~~~l~~~~~~~k~  167 (169)
T d1ihga1          98 DSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED-KAIQAELLKVKQKIKAQKDKEKA  167 (169)
T ss_dssp             HHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999998 78999999999888877777654

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.85  E-value=1.4e-21  Score=166.22  Aligned_cols=114  Identities=25%  Similarity=0.355  Sum_probs=97.3

Q ss_pred             CCCceEEEEeecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCC
Q 015006           53 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGE  132 (414)
Q Consensus        53 ~dg~~~k~i~~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE  132 (414)
                      -+.+|.++++++|.|.   .+|..||+|+|||+|++.|  |++|+ ++.+ .+.|  |.++.+.+++||+.+|.+|++||
T Consensus        32 ~~sGl~y~il~~G~G~---~~P~~gd~V~v~Y~g~l~d--G~~fd-s~~~-~~~p--~~~~~~~~i~G~~e~l~~M~~Ge  102 (160)
T d1jvwa_          32 LPSGLVFQRIARGSGK---RAPAIDDKCEVHYTGRLRD--GTVFD-SSRE-RGKP--TTFRPNEVIKGWTEALQLMREGD  102 (160)
T ss_dssp             CTTSCEEEEEECCCCS---BCCCTTCCEEEEEEEECTT--SCEEE-EHHH-HTSC--EEECGGGSCHHHHHHHTTCCTTC
T ss_pred             CCCCCEEEEEECcccc---cCCCCCcceEEEEEEEEcc--CCeee-eecc-ccCc--cccCccccchhHHHHhcCccccc
Confidence            4567899999999996   3467899999999999876  99984 4443 3456  55677789999999999999999


Q ss_pred             eEEEEecCCCccccCCCCCCCCCCcceEEEEEEcccCCCCCCC
Q 015006          133 IALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWT  175 (414)
Q Consensus       133 ~~~v~i~~~~~yg~~~~~~~ip~~~~l~~eieL~~~~~~~~~~  175 (414)
                      +++|+|||++|||..|.++.||++++|+|+|+|++|.....+.
T Consensus       103 ~~~v~iPp~laYG~~g~~~~IPp~s~LifeIeLl~i~~~~~~~  145 (160)
T d1jvwa_         103 RWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELISIKDGGKGR  145 (160)
T ss_dssp             EEEEEECGGGTTTTTCSSSSSCTTCCEEEEEEEEEEGGGCCSC
T ss_pred             eeEEEeCHHHCcCCCCCCCCcCcCCcEEEEEEEEEEecCCCCC
Confidence            9999999999999999888899999999999999997655443

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

Probab=99.85  E-value=1.3e-21  Score=173.53  Aligned_cols=107  Identities=23%  Similarity=0.373  Sum_probs=95.6

Q ss_pred             CCceEEEEeecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCCe
Q 015006           54 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI  133 (414)
Q Consensus        54 dg~~~k~i~~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~  133 (414)
                      +.+|.++++++|.|..|    ..|++|+|||+|++.|  |++|++ ++. ++.|++|.+|  .+|+||+.+|.+|++|++
T Consensus        97 ~sGl~y~v~~~G~G~~p----~~~d~v~v~y~g~l~d--g~~f~~-s~~-~~~p~~~~~~--~~i~G~~e~l~~m~~G~~  166 (204)
T d1fd9a_          97 PSGLQYKVINSGNGVKP----GKSDTVTVEYTGRLID--GTVFDS-TEK-TGKPATFQVS--QVIPGWTEALQLMPAGST  166 (204)
T ss_dssp             TTSCEEEEEECCCSCCC----CTTCEEEEEEEEEETT--SCEEEE-HHH-HCSCEEEEGG--GSCHHHHHHHTTCCTTCE
T ss_pred             cCccEEEEeecCCCccc----CCCCEEEEEEEEEECC--CCEecc-ccc-CCCCceecCC--ccchhHHHHhcCCCCCCE
Confidence            45788999999999754    6899999999999987  999854 443 5789999876  599999999999999999


Q ss_pred             EEEEecCCCccccCCCCCCCCCCcceEEEEEEcccCC
Q 015006          134 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEK  170 (414)
Q Consensus       134 ~~v~i~~~~~yg~~~~~~~ip~~~~l~~eieL~~~~~  170 (414)
                      +.|.|||++|||..|.++.||||++|+|+|+|++|.+
T Consensus       167 ~~~~iP~~laYG~~g~~~~Ipp~s~l~feveL~~i~k  203 (204)
T d1fd9a_         167 WEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLISVKK  203 (204)
T ss_dssp             EEEEECGGGTTTTCCCSSSCCTTCCEEEEEEEEEEEC
T ss_pred             EEEEEChHHCcCCCCCCCCcCcCCcEEEEEEEEEEEc
Confidence            9999999999999999889999999999999999864

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=5.2e-21  Score=154.69  Aligned_cols=110  Identities=32%  Similarity=0.565  Sum_probs=93.5

Q ss_pred             eec--CCCceEEEEeecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCC---CchHHHHHH
Q 015006           50 DML--GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEG---LVPEGFEMC  124 (414)
Q Consensus        50 dv~--~dg~~~k~i~~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~---~v~~gle~~  124 (414)
                      ||+  .||+|+|+|+++|.|.   .+|..|+.|+|||+|++.+  | +|+.+       +..|..+.+   .+++||+.|
T Consensus         1 d~t~~~D~gi~~~il~~G~G~---~~p~~gd~V~v~y~g~~~~--~-~~~~~-------~~~~~~~~~~~~~~i~Gl~~~   67 (117)
T d1q1ca2           1 DLTEEEDGGIIRRIQTRGEGY---AKPNEGAIVEVALEGYYKD--K-LFDQR-------ELRFEIGEGENLDLPYGLERA   67 (117)
T ss_dssp             ECCTTCSSSEEEEEEECCSCS---CCCCTTCEEEEEEEEEETT--E-EEEEE-------EEEEETTCGGGGTCCHHHHHH
T ss_pred             CCCccCCCCEEEEEEeeecCC---CCCCCCCEEEEEEEEEeCC--C-cEeec-------cccceeeecceeeeCcHHHHh
Confidence            566  7899999999999996   3568999999999999854  4 45333       456666654   589999999


Q ss_pred             hhhcCCCCeEEEEecCCCccccCCCCC-CCCCCcceEEEEEEcccCCCC
Q 015006          125 VRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEKPK  172 (414)
Q Consensus       125 l~~M~~GE~~~v~i~~~~~yg~~~~~~-~ip~~~~l~~eieL~~~~~~~  172 (414)
                      |.+|++||+++|.|||++|||..+.++ .|||+++|+|+|+|++|.+.+
T Consensus        68 l~~M~~Ge~~~i~ip~~~ayG~~g~~~~~Ipp~s~l~f~veL~~~~~~k  116 (117)
T d1q1ca2          68 IQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAK  116 (117)
T ss_dssp             HTTCCTTCEEEEEECGGGTTTTTCBGGGTBCTTCCEEEEEEEEEEECCC
T ss_pred             hhcchhhCeEEEEECHHHhCcccCCCCCccCcCCeEEEEEEEEEEEeCC
Confidence            999999999999999999999998764 799999999999999998654

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=5.1e-21  Score=170.37  Aligned_cols=106  Identities=29%  Similarity=0.531  Sum_probs=94.3

Q ss_pred             CCCceEEEEeecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCC
Q 015006           53 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGE  132 (414)
Q Consensus        53 ~dg~~~k~i~~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE  132 (414)
                      ...+|..+++++|+|..|    ..|++|+|||+|++.|  |++| +++++ ++.|+.|.+|  .+|+||+.+|.+|++|+
T Consensus       105 ~~sGl~y~v~~~G~G~~p----~~gd~v~v~y~g~l~d--G~~f-d~s~~-~~~p~~~~~~--~vi~g~~e~l~~m~~G~  174 (210)
T d1q6ha_         105 SSTGLVYQVVEAGKGEAP----KDSDTVVVNYKGTLID--GKEF-DNSYT-RGEPLSFRLD--GVIPGWTEGLKNIKKGG  174 (210)
T ss_dssp             CTTSCEEEEEECCSSCCC----CTTCEEEEEEEEEETT--SCEE-EEGGG-GTSCEEEEGG--GSCHHHHHHGGGSCTTC
T ss_pred             ccCceEEEEeeCCCCCCC----CCCceEEEEEEEEEcC--CCEE-eeccc-CCCcceeccC--ccchhHHHHHhhccCCC
Confidence            356788899999999754    6899999999999986  9998 45544 6889999996  59999999999999999


Q ss_pred             eEEEEecCCCccccCCCCCCCCCCcceEEEEEEcccC
Q 015006          133 IALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE  169 (414)
Q Consensus       133 ~~~v~i~~~~~yg~~~~~~~ip~~~~l~~eieL~~~~  169 (414)
                      ++.|.|||++|||..|.+ .||||++|+|+|+|++|+
T Consensus       175 k~~~~iP~~laYG~~g~~-~Ippns~Lvfevel~~ik  210 (210)
T d1q6ha_         175 KIKLVIPPELAYGKAGVP-GIPPNSTLVFDVELLDVK  210 (210)
T ss_dssp             EEEEEECGGGTTTTTCBT-TBCTTCCEEEEEEEEEEC
T ss_pred             EEEEEECHHHCcCCCCCC-CCCcCCcEEEEEEEEEEC
Confidence            999999999999999975 599999999999999874

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=4.9e-20  Score=148.88  Aligned_cols=115  Identities=26%  Similarity=0.456  Sum_probs=108.3

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      .++.+++.|+.+|+.|+|.+|+..|.++|.    ..|.+           ..+|+|+|.||+++++|.+|+.+|.+++++
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~----~~p~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   66 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIK----LDPHN-----------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDL   66 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCcc-----------hhhhhcccccccccccccccchhhhhHHHh
Confidence            478899999999999999999999999999    67877           779999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 015006          265 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  315 (414)
Q Consensus       265 dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~  315 (414)
                      +|+++.+|+++|.++..+|++++|+..|++|++++|++ +.+...+..++.
T Consensus        67 ~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~l~~l~~  116 (117)
T d1elwa_          67 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN-PQLKEGLQNMEA  116 (117)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC-HHHHHHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHhC
Confidence            99999999999999999999999999999999999998 678888877753

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=4.6e-19  Score=150.77  Aligned_cols=124  Identities=27%  Similarity=0.446  Sum_probs=114.1

Q ss_pred             hhhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHH
Q 015006          179 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEAC  258 (414)
Q Consensus       179 ~~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~  258 (414)
                      .+.-+++|..++.+||.+|+.|+|.+|+..|++|+.    +.|.+           ..+|+|+|.|++.+|++.+|+.+|
T Consensus         3 ~~~~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~~~~~~A~~~~   67 (159)
T d1a17a_           3 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIE----LNPSN-----------AIYYGNRSLAYLRTECYGYALGDA   67 (159)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTC-----------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHcCCHHHHHHHhhhccc----cchhh-----------hhhhhhhHHHHHhccccchHHHHH
Confidence            345678999999999999999999999999999999    67777           789999999999999999999999


Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 015006          259 NKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  318 (414)
Q Consensus       259 ~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~  318 (414)
                      .++|+++|+++.||+++|.++..+|+|++|+.+|+++++++|++ ..+...+..+.....
T Consensus        68 ~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~-~~~~~~l~~~~~~~~  126 (159)
T d1a17a_          68 TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD-KDAKMKYQECNKIVK  126 (159)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998 677777777765443

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.80  E-value=5e-20  Score=150.54  Aligned_cols=107  Identities=30%  Similarity=0.463  Sum_probs=93.1

Q ss_pred             CCceEEEEeecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhh------h
Q 015006           54 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVR------L  127 (414)
Q Consensus        54 dg~~~k~i~~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~------~  127 (414)
                      ..+|..+++++|.|..    |..||.|+|||++++.+  |++| +++++ .+.|+.|.+|.+.+++||+.++.      .
T Consensus         7 psGl~y~~~~~G~G~~----p~~gd~V~v~y~g~l~~--G~~f-dss~~-~~~p~~~~~g~~~~i~g~~~~i~g~~~l~~   78 (125)
T d1u79a_           7 PSGLAFCDKVVGYGPE----AVKGQLIKAHYVGKLEN--GKVF-DSSYN-RGKPLTFRIGVGEVIKGWDQGILGSDGIPP   78 (125)
T ss_dssp             TTSCEEEEEECCSSCB----CCTTCEEEEEEEEECTT--SCEE-EEHHH-HTSCEEEETTSSSSCHHHHHHHHCBTTBCC
T ss_pred             CCCCEEEEEEeccCCC----CCCCCEEEEEEEeeecC--CcEE-ecccc-cCcceeEecCccccccchhhhccchhhccc
Confidence            4468889999999964    47899999999999865  9988 55554 57899999999999999999885      4


Q ss_pred             cCCCCeEEEEecCCCccccCCC-----CCCCCCCcceEEEEEEccc
Q 015006          128 MLPGEIALVTCPPDYAYDKFLR-----PANVPEGAHIQWEIELLGF  168 (414)
Q Consensus       128 M~~GE~~~v~i~~~~~yg~~~~-----~~~ip~~~~l~~eieL~~~  168 (414)
                      |++||+++|.|||++|||+.|.     .+.||++++|+|+|+|+.+
T Consensus        79 M~~G~k~~v~iP~~laYG~~G~~~~~~~~~IPp~s~LifeieLl~~  124 (125)
T d1u79a_          79 MLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  124 (125)
T ss_dssp             CBTTCEEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             ccCCCEEEEEECHHHCCCCCCcCCcCCCCcCCcCCeEEEEEEEEEe
Confidence            9999999999999999999875     2459999999999999875

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=1e-18  Score=153.10  Aligned_cols=102  Identities=25%  Similarity=0.443  Sum_probs=98.0

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      |+.+++.||.+|+.|+|.+|+..|++||.    +.|.+           ..+|+|+|.||+++|+|++|+.+|.+||.++
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~----~~p~~-----------~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~   68 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAIT----RNPLV-----------AVYYTNRALCYLKMQQPEQALADCRRALELD   68 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC
Confidence            78899999999999999999999999999    67877           7899999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      |+++.+|+++|.+|..+|+|++|+..|++|++++|++
T Consensus        69 p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~  105 (201)
T d2c2la1          69 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (201)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            9999999999999999999999999999999998854

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.3e-17  Score=135.11  Aligned_cols=118  Identities=22%  Similarity=0.365  Sum_probs=104.8

Q ss_pred             HHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015006          184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  263 (414)
Q Consensus       184 ~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~  263 (414)
                      ++|..+++.|+.+|..|+|.+|+.+|+++|.    +.|.+           ..+++|+|.||+++++|.+|+.+|.++|+
T Consensus         2 ~~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~----~~p~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~al~   66 (128)
T d1elra_           2 KQALKEKELGNDAYKKKDFDTALKHYDKAKE----LDPTN-----------MTYITNQAAVYFEKGDYNKCRELCEKAIE   66 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCccc-----------HHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence            4688999999999999999999999999999    67776           67999999999999999999999999999


Q ss_pred             hCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 015006          264 ANPAHV-------KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  318 (414)
Q Consensus       264 ~dp~~~-------ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~  318 (414)
                      ++|.+.       ++|+++|.++..+++|++|+..|.+++..+|+  .++...+..+.+.++
T Consensus        67 l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~--~~~~~~l~~~~k~lk  126 (128)
T d1elra_          67 VGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT--PDVLKKCQQAEKILK  126 (128)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHH
T ss_pred             hCcccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHh
Confidence            998764       67888999999999999999999999999886  456666666665554

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3.9e-15  Score=120.48  Aligned_cols=112  Identities=14%  Similarity=0.184  Sum_probs=98.0

Q ss_pred             hhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCC
Q 015006          191 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG---ECRKSIEACNKVLDANPA  267 (414)
Q Consensus       191 ~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~---~~~~A~~~~~~al~~dp~  267 (414)
                      +..|.++..++|.+|.+.|.++|.    +.|.+           ..+++|+|.|+++.+   ++.+|+..++++|..+|.
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~----~~p~~-----------~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~   68 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKA----AGSVS-----------KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK   68 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH----HSCCC-----------HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHh----hCCCC-----------HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCC
Confidence            456778888999999999999999    78887           679999999999754   566799999999999986


Q ss_pred             c--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 015006          268 H--VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  318 (414)
Q Consensus       268 ~--~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~  318 (414)
                      +  +.++|.+|.+|..+|+|++|+..|++||+++|+| ..+...+..+.+++.
T Consensus        69 ~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~-~~A~~l~~~I~~~~~  120 (122)
T d1nzna_          69 EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN-NQAKELERLIDKAMK  120 (122)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHHc
Confidence            6  5599999999999999999999999999999999 678877777766554

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=6.2e-14  Score=126.73  Aligned_cols=114  Identities=21%  Similarity=0.213  Sum_probs=104.3

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      .+..+..+|..+++.|+|++|+..|++||.    ++|.+           ..+|+|+|.||.++|+|++|+.+|.+++++
T Consensus        36 ~a~~~~~~G~~y~~~g~~~~A~~~~~~al~----l~p~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~  100 (259)
T d1xnfa_          36 RAQLLYERGVLYDSLGLRALARNDFSQALA----IRPDM-----------PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL  100 (259)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHhhc----cCCCC-----------HHHHhhhchHHHHHHHHHHhhhhhhHHHHH
Confidence            588899999999999999999999999999    68877           678999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          265 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       265 dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                      +|+++.+++++|.++..+|++++|+..|+++++++|++ ......+..+.
T Consensus       101 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~  149 (259)
T d1xnfa_         101 DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND-PFRSLWLYLAE  149 (259)
T ss_dssp             CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred             HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccc-HHHHHHHHHHH
Confidence            99999999999999999999999999999999999987 44544444443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=7.7e-14  Score=121.86  Aligned_cols=101  Identities=14%  Similarity=0.210  Sum_probs=90.7

Q ss_pred             HHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015006          184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  263 (414)
Q Consensus       184 ~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~  263 (414)
                      ..+..+.++|..++..|+|..|+..|.++       .+.+           ..+++|+|.||+++|+|++|+.+|++||+
T Consensus         3 ~~~~~l~~~g~~~~~~~d~~~Al~~~~~i-------~~~~-----------~~~~~nlG~~~~~~g~~~~A~~~~~kAl~   64 (192)
T d1hh8a_           3 VEAISLWNEGVLAADKKDWKGALDAFSAV-------QDPH-----------SRICFNIGCMYTILKNMTEAEKAFTRSIN   64 (192)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTS-------SSCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHhc-------CCCC-----------HHHHHHHHHHHHHcCCchhHHHHHHHHHH
Confidence            35667889999999999999999999753       2333           45789999999999999999999999999


Q ss_pred             hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          264 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       264 ~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      ++|+++.+|+++|.++..+|+|++|+.+|++|+...|.|
T Consensus        65 ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n  103 (192)
T d1hh8a_          65 RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN  103 (192)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC
T ss_pred             HhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccC
Confidence            999999999999999999999999999999999987654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.50  E-value=1.9e-14  Score=121.42  Aligned_cols=117  Identities=18%  Similarity=0.258  Sum_probs=95.2

Q ss_pred             hHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015006          183 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  262 (414)
Q Consensus       183 ~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al  262 (414)
                      +..+..+...|+.+|..|+|++|+..|++||.+.........   .........+|+|+|.||.++|+|++|+.+|.++|
T Consensus         6 ~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~---~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al   82 (156)
T d2hr2a1           6 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEA---FDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL   82 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSC---CCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhh---cccchhHHHHHHHHHHHHHHcCccchhhHhhhhhh
Confidence            456777778899999999999999999999996654321110   01122346789999999999999999999999999


Q ss_pred             HhCC-----------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          263 DANP-----------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       263 ~~dp-----------~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      .+.|           ...++|+++|.+|..+|++++|+..|++|+++.|+.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          83 HYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             hcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence            8754           236689999999999999999999999999996643

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.50  E-value=4.3e-14  Score=117.80  Aligned_cols=115  Identities=19%  Similarity=0.194  Sum_probs=99.2

Q ss_pred             hhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHc----------CCHHHHHHHHHHH
Q 015006          192 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL----------GECRKSIEACNKV  261 (414)
Q Consensus       192 ~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl----------~~~~~A~~~~~~a  261 (414)
                      .+..+-+.+.|++|+..|++|+.    ++|.+           ..+++|+|.|++.+          +.+++|+..+++|
T Consensus         3 ~~~~~~r~~~fe~A~~~~e~al~----~~P~~-----------~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kA   67 (145)
T d1zu2a1           3 TETEFDRILLFEQIRQDAENTYK----SNPLD-----------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEA   67 (145)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHccHHHHHHHHHHHHh----hCCcc-----------hHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            34556677889999999999999    78888           77999999999865          4568899999999


Q ss_pred             HHhCCCcHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 015006          262 LDANPAHVKGLYRRGMAYMALGE-----------FEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVES  322 (414)
Q Consensus       262 l~~dp~~~ka~~r~g~a~~~l~~-----------~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~  322 (414)
                      |+++|+++.+|+++|.+|..+|+           |++|++.|++|++++|+| ..++..|..+.+......+
T Consensus        68 l~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~-~~~~~~L~~~~ka~~~~~e  138 (145)
T d1zu2a1          68 LLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN-THYLKSLEMTAKAPQLHAE  138 (145)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHTHHHHHHH
T ss_pred             HHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCH-HHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998764           799999999999999998 6788888888766654444

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.44  E-value=2.1e-13  Score=108.32  Aligned_cols=92  Identities=12%  Similarity=0.053  Sum_probs=86.1

Q ss_pred             HhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 015006          190 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV  269 (414)
Q Consensus       190 k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~  269 (414)
                      ...|..+++.|+|.+|+..|++++.    ..|.+           ..+|.++|.|+.+++++.+|+.++.++++++|+++
T Consensus        20 ~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~   84 (112)
T d1hxia_          20 MEEGLSMLKLANLAEAALAFEAVCQ----KEPER-----------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI   84 (112)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH----HSTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhcc----ccccc-----------chhhhhhhhhhhhhhhHHHhhcccccccccccccc
Confidence            4678889999999999999999999    67776           67999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015006          270 KGLYRRGMAYMALGEFEEAQRDFEMMM  296 (414)
Q Consensus       270 ka~~r~g~a~~~l~~~~eA~~~~~~al  296 (414)
                      .+++.+|.+|..+|++++|++.|++.|
T Consensus        85 ~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          85 AVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            999999999999999999999999876

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

Probab=99.40  E-value=1e-13  Score=115.77  Aligned_cols=71  Identities=35%  Similarity=0.486  Sum_probs=62.0

Q ss_pred             CCCCeEEEEEEEEeecCCCceEeeeccC------------CCCCceEEEcCCCCchHHHHHHhhhcCCCCeEEEEecCCC
Q 015006           75 LHDSLLCVHYKGMLLNEEKKVFYDTRVD------------NDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDY  142 (414)
Q Consensus        75 ~~~~~v~v~y~g~~~~~~g~~~~~s~~~------------~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~~v~i~~~~  142 (414)
                      ..|+.|++||++++.|  |++| +|+++            .+.+|++|.+|.|.+++|||.+|.+|++|++..|.|||+.
T Consensus         3 ~~G~~V~v~Y~~~~~~--G~~f-dsT~e~~~~~~~~~~~~~~~~P~~f~~G~g~~ipglE~al~gm~~Ge~~~v~i~p~~   79 (151)
T d1ix5a_           3 DKGVKIKVDYIGKLES--GDVF-DTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEK   79 (151)
T ss_dssp             CTTCEEEECCEECCTT--SCCC-EESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTT
T ss_pred             cCCCEEEEEEEEEECC--CCEE-EeCchHhcccccccccccCCCCEEEEecCCCccHHHHHHHHhhcCCceeEEEeCHHH
Confidence            4799999999999865  9988 55532            1457999999999999999999999999999999999999


Q ss_pred             ccccCC
Q 015006          143 AYDKFL  148 (414)
Q Consensus       143 ~yg~~~  148 (414)
                      |||...
T Consensus        80 ayG~~d   85 (151)
T d1ix5a_          80 AYGNRN   85 (151)
T ss_dssp             SSCSCC
T ss_pred             hccccc
Confidence            999654

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=4.6e-12  Score=110.32  Aligned_cols=102  Identities=9%  Similarity=0.099  Sum_probs=93.2

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +..+.+.|+.+++.|+|++|+..|++||+    ++|.+           ..+|+|+|.||.++|+|.+|+.+|.+|+...
T Consensus        36 ~~~~~nlG~~~~~~g~~~~A~~~~~kAl~----ldp~~-----------~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~  100 (192)
T d1hh8a_          36 SRICFNIGCMYTILKNMTEAEKAFTRSIN----RDKHL-----------AVAYFQRGMLYYQTEKYDLAIKDLKEALIQL  100 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCchhHHHHHHHHHH----Hhhhh-----------hhhHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence            34577999999999999999999999999    67777           7899999999999999999999999999876


Q ss_pred             CCc----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          266 PAH----------------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       266 p~~----------------~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      +.|                ..++|++|.++..+|++++|++.|.+|+++.|+.
T Consensus       101 ~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_         101 RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             ccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            543                5789999999999999999999999999999874

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=3.7e-12  Score=118.58  Aligned_cols=101  Identities=22%  Similarity=0.366  Sum_probs=93.5

Q ss_pred             HHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 015006          187 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  266 (414)
Q Consensus       187 ~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp  266 (414)
                      ..+...|..++..|++.+|+..|++++.    ..|.+           ..++.++|.|+.++|++++|+..|.++++++|
T Consensus       173 ~~~~~l~~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  237 (323)
T d1fcha_         173 DVQCGLGVLFNLSGEYDKAVDCFTAALS----VRPND-----------YLLWNKLGATLANGNQSEEAVAAYRRALELQP  237 (323)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             ccchhhHHHHHHHHHHhhhhcccccccc----ccccc-----------ccchhhhhhcccccccchhHHHHHHHHHHHhh
Confidence            3456778889999999999999999998    56666           67899999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          267 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       267 ~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      +++.+++.+|.++..+|++++|+..|++||+++|++
T Consensus       238 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  273 (323)
T d1fcha_         238 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS  273 (323)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred             ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcC
Confidence            999999999999999999999999999999999987

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=2.6e-11  Score=108.98  Aligned_cols=129  Identities=16%  Similarity=0.154  Sum_probs=101.7

Q ss_pred             ccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 015006          194 NRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLY  273 (414)
Q Consensus       194 n~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~  273 (414)
                      ..+....+++.|+..+.+++..    .+..+       ...+.+|+++|.||.++|+|++|+.++.++|.++|+++.+|+
T Consensus         7 ~~~~~~~~~e~al~~~~e~l~~----~~~~~-------~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~   75 (259)
T d1xnfa_           7 VPLQPTLQQEVILARMEQILAS----RALTD-------DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFN   75 (259)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHTS----SCCCH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred             hcccccHHHHHHHHHHHHHHHh----hhcCC-------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHh
Confidence            3455667888999999998872    22221       224678999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 015006          274 RRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKK  335 (414)
Q Consensus       274 r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  335 (414)
                      ++|.++..+|++++|+..|++|++++|++ ..+...+..+...+.+..+ ....+.+.+...
T Consensus        76 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~~-A~~~~~~al~~~  135 (259)
T d1xnfa_          76 YLGIYLTQAGNFDAAYEAFDSVLELDPTY-NYAHLNRGIALYYGGRDKL-AQDDLLAFYQDD  135 (259)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTC-THHHHHHHHHHHHTTCHHH-HHHHHHHHHHHC
T ss_pred             hhchHHHHHHHHHHhhhhhhHHHHHHhhh-hhhHHHHHHHHHHHhhHHH-HHHHHHHHHhhc
Confidence            99999999999999999999999999998 5677777777654443332 234444444433

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.2e-11  Score=116.10  Aligned_cols=79  Identities=8%  Similarity=0.047  Sum_probs=51.9

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                      ..++.|+|.++.++|++.+|+..+.++++++|.+..+|+.+|.++..++++++|+.+|++|++++|.| ..+...+..+.
T Consensus       112 ~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n-~~a~~~r~~~l  190 (315)
T d2h6fa1         112 YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN-NSVWNQRYFVI  190 (315)
T ss_dssp             HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred             hhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCcc-HHHHHHHHHHH
Confidence            45666666666666666666666666666666666666666666666666666666666666666666 34555555443

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.3e-11  Score=115.88  Aligned_cols=124  Identities=14%  Similarity=0.173  Sum_probs=90.4

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHH-----------------------HHhhhhhHHHHHHH
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGK-----------------------VFVGKRNLLHLNVA  242 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~-----------------------~~~~~~~~~~~N~a  242 (414)
                      +..+...|..+++.|++.+|+..|++++.    +.|.+.+-..                       ...+....++.+++
T Consensus       237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  312 (388)
T d1w3ba_         237 AVVHGNLACVYYEQGLIDLAIDTYRRAIE----LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA  312 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHH
Confidence            45566778888888999999999999888    5665532110                       01112235677778


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          243 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       243 ~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                      .++.++|+|++|+..+.++++++|+++.+++++|.++..+|++++|+..|++|++++|++ ..+...|..+.
T Consensus       313 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~-~~a~~~lg~~~  383 (388)
T d1w3ba_         313 NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF-ADAYSNMGNTL  383 (388)
T ss_dssp             HHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTC-HHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence            888888888888888888888888888888888888888888888888888888888877 56666666554

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.1e-11  Score=116.42  Aligned_cols=118  Identities=9%  Similarity=0.024  Sum_probs=105.3

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG-ECRKSIEACNKVLD  263 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~-~~~~A~~~~~~al~  263 (414)
                      .+..+...|..+.+.+.+++|+..|.+||.    ++|.+           ..+|+|+|.|+.+++ ++++|+.++.++|+
T Consensus        42 ~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~----lnP~~-----------~~a~~~r~~~l~~l~~~~~eal~~~~~al~  106 (315)
T d2h6fa1          42 FRDVYDYFRAVLQRDERSERAFKLTRDAIE----LNAAN-----------YTVWHFRRVLLKSLQKDLHEEMNYITAIIE  106 (315)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHHHH----HCCCC-----------hHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence            455666678888889999999999999999    78888           789999999999987 59999999999999


Q ss_pred             hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 015006          264 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  318 (414)
Q Consensus       264 ~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~  318 (414)
                      ++|++..+|+++|.++..+|++++|+..|.+|++++|.| ..+...+..+...+.
T Consensus       107 ~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n-~~a~~~~~~~~~~~~  160 (315)
T d2h6fa1         107 EQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN-YHAWQHRQWVIQEFK  160 (315)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHT
T ss_pred             HHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcc-hHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998 667777776665544

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

Probab=99.23  E-value=1.2e-11  Score=92.79  Aligned_cols=83  Identities=14%  Similarity=0.244  Sum_probs=71.5

Q ss_pred             CCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCCeEEEEecCCCccccCCCCCCCC
Q 015006           75 LHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVP  154 (414)
Q Consensus        75 ~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~~ip  154 (414)
                      ..||.|+|+|+|++ |  |+.| +++   ..+.+.|.+|.+.++|||+.+|.+|++||+..|.+++...|+....     
T Consensus         3 a~GD~V~idy~g~~-d--G~~~-~~~---~~~~~~~~lg~~~~ipgf~~~l~g~~~Ge~~~~~i~~p~~y~~~~l-----   70 (85)
T d1hxva_           3 ANGDIAIIDFTGIV-D--NKKL-ASA---SAQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSDYHVKEL-----   70 (85)
T ss_dssp             CSSEEEEEEEEEEE-T--TEEC-STT---CCSEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTTSSSSGG-----
T ss_pred             CCCCEEEEEEEEEE-C--CEEc-ccc---cccCCCEEECCcccCchHHHHhccCcCCCeEEEEEEChhhcCcccC-----
Confidence            47999999999996 4  8887 433   3457999999999999999999999999999999998888887553     


Q ss_pred             CCcceEEEEEEcccC
Q 015006          155 EGAHIQWEIELLGFE  169 (414)
Q Consensus       155 ~~~~l~~eieL~~~~  169 (414)
                      .|.++.|+|+|.+++
T Consensus        71 aGk~~~f~V~v~~Vk   85 (85)
T d1hxva_          71 QSKPVTFEVVLKAIK   85 (85)
T ss_dssp             GSCCCEEEEEECCBC
T ss_pred             CCCcEEEEEEEEEeC
Confidence            688999999998763

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=4.4e-11  Score=112.17  Aligned_cols=99  Identities=16%  Similarity=0.269  Sum_probs=93.0

Q ss_pred             HhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 015006          190 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV  269 (414)
Q Consensus       190 k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~  269 (414)
                      .+.|+.+|+.|+|.+|+..|++++.    ..|.+           ..++.++|.||+++|+|++|+..+.++++++|+++
T Consensus         3 l~la~~~~~~G~~~~A~~~~~~~l~----~~p~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~   67 (388)
T d1w3ba_           3 MELAHREYQAGDFEAAERHCMQLWR----QEPDN-----------TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLA   67 (388)
T ss_dssp             CTHHHHHHHHTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            4678899999999999999999999    57776           56899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 015006          270 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  303 (414)
Q Consensus       270 ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~  303 (414)
                      .+++++|.++..+|++++|+..+..+++.+|.+.
T Consensus        68 ~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  101 (388)
T d1w3ba_          68 EAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFI  101 (388)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHhhhhccccccccccccccccccccc
Confidence            9999999999999999999999999999999873

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.21  E-value=2.1e-10  Score=98.48  Aligned_cols=119  Identities=15%  Similarity=0.160  Sum_probs=101.3

Q ss_pred             hHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCC----C---ChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHH
Q 015006          183 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNP----Q---DDEEGKVFVGKRNLLHLNVAACLLKLGECRKSI  255 (414)
Q Consensus       183 ~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p----~---~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~  255 (414)
                      +.....+...|+.++..|++++|+..|.+||.+...-..    .   -..+...+......++.+++.+++++|+|.+|+
T Consensus         8 ~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al   87 (179)
T d2ff4a2           8 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI   87 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence            346778889999999999999999999999996532110    0   122334556677789999999999999999999


Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HhhCCC
Q 015006          256 EACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMM-------MKVDKS  301 (414)
Q Consensus       256 ~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~a-------l~l~P~  301 (414)
                      .+|.++|.++|.+..+|.+++.+|..+|++.+|+..|+++       |-++|.
T Consensus        88 ~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~  140 (179)
T d2ff4a2          88 AELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG  140 (179)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence            9999999999999999999999999999999999999998       557887

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=3.2e-11  Score=92.43  Aligned_cols=89  Identities=15%  Similarity=0.158  Sum_probs=74.1

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +....+.|+.+++.|+|..|+..|++|+.........        ......++.|+|.|+.++|+|++|+.+++++|+++
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~--------~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~   76 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEIS--------TIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCC--------SSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhcc--------CccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence            5566789999999999999999999999965432211        12236789999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHc
Q 015006          266 PAHVKGLYRRGMAYMAL  282 (414)
Q Consensus       266 p~~~ka~~r~g~a~~~l  282 (414)
                      |+++.|+++++.....+
T Consensus        77 P~~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          77 PEHQRANGNLKYFEYIM   93 (95)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHh
Confidence            99999999988766544

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=5.3e-11  Score=91.15  Aligned_cols=83  Identities=11%  Similarity=0.028  Sum_probs=73.4

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 015006          235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAH-------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDAT  307 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~-------~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~  307 (414)
                      +.-++++|.++++.|+|.+|+.++.+|+++.|.+       +.+|+++|.++..+|++++|+..|++||+++|++ ..+.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~-~~a~   83 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH-QRAN   83 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCC-HHHH
Confidence            3456799999999999999999999999986543       7889999999999999999999999999999999 6788


Q ss_pred             HHHHHHHHHHH
Q 015006          308 AALSKLKKQRQ  318 (414)
Q Consensus       308 ~~l~~~~~~~~  318 (414)
                      .++..+++.+.
T Consensus        84 ~Nl~~~~~~l~   94 (95)
T d1tjca_          84 GNLKYFEYIMA   94 (95)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhC
Confidence            88888776553

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=5.7e-11  Score=110.32  Aligned_cols=98  Identities=13%  Similarity=0.132  Sum_probs=93.2

Q ss_pred             HhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 015006          190 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV  269 (414)
Q Consensus       190 k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~  269 (414)
                      .++|..+++.|+|.+|+..|+++++    .+|.+           ..+|.++|.|+..+|+|++|+..+.++++++|+++
T Consensus        23 ~~~g~~~~~~g~~~~A~~~~~~al~----~~P~~-----------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~   87 (323)
T d1fcha_          23 FEEGLRRLQEGDLPNAVLLFEAAVQ----QDPKH-----------MEAWQYLGTTQAENEQELLAISALRRCLELKPDNQ   87 (323)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH----SCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCChHHHHHHHHhhhccccccc
Confidence            3678999999999999999999999    78887           67999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          270 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       270 ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      .+++++|.++..+|++++|+..|++++.++|.+
T Consensus        88 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  120 (323)
T d1fcha_          88 TALMALAVSFTNESLQRQACEILRDWLRYTPAY  120 (323)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT
T ss_pred             cccccccccccccccccccccchhhHHHhccch
Confidence            999999999999999999999999999999875

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.18  E-value=2.5e-10  Score=90.01  Aligned_cols=87  Identities=14%  Similarity=0.088  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 015006          236 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  315 (414)
Q Consensus       236 ~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~  315 (414)
                      ..++++|.++++.|++.+|+..+++++.++|+++.+|+.+|.++..++++++|+..|++|++++|++ ..+...|..+..
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~a~~~la~~y~   95 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD-IAVHAALAVSHT   95 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhccccccccccccc-ccchHHHHHHHH
Confidence            3467899999999999999999999999999999999999999999999999999999999999998 678888888877


Q ss_pred             HHHHHHHH
Q 015006          316 QRQEVESK  323 (414)
Q Consensus       316 ~~~~~~~~  323 (414)
                      ......+.
T Consensus        96 ~~g~~~~A  103 (112)
T d1hxia_          96 NEHNANAA  103 (112)
T ss_dssp             HHHHHHHH
T ss_pred             HCCCHHHH
Confidence            76655544

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.13  E-value=1.6e-11  Score=97.93  Aligned_cols=45  Identities=33%  Similarity=0.409  Sum_probs=41.8

Q ss_pred             ccccCCcCcEEEEEEcCCCcCCCCC-CCCCCCCCeeeEEEEeeEEE
Q 015006            2 GIGTMTREEKAVIYVTSQYLTPSPL-MPVVEGCEEVHFEVELVHLI   46 (414)
Q Consensus         2 ~~~~m~~Ge~~~~~i~~~~~~g~~~-~~~ip~~~~l~~~vel~~~~   46 (414)
                      ||.+|++||+++|+|||++|||+.+ ++.||||++|+|+|||++|.
T Consensus        72 ~l~~M~~Ge~~~~~ipp~laYG~~g~~~~IPp~s~l~f~IeLl~f~  117 (118)
T d1r9ha_          72 GVATMTKGEVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEWS  117 (118)
T ss_dssp             HHTTCCBTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             eeeeecCCceEEEEECHHHhCCcCCCCCccCcCCcEEEEEEEEEEe
Confidence            7899999999999999999999855 46799999999999999986

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=4.1e-10  Score=89.44  Aligned_cols=98  Identities=11%  Similarity=0.166  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 015006          238 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  317 (414)
Q Consensus       238 ~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~  317 (414)
                      +.+.|..+++.|+|++|+..|+++|.++|.++.+|+.+|.+|..+|++++|+..|.++++++|++ ..+...+..+...+
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~g~~~~~~   84 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW-GKGYSRKAAALEFL   84 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccch-hhHHHHHHHHHHHc
Confidence            45789999999999999999999999999999999999999999999999999999999999998 67888888877666


Q ss_pred             HHHHHHHHHHHHhhccCCCC
Q 015006          318 QEVESKARKQFKGLFDKKPG  337 (414)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~  337 (414)
                      ....+ ....+.+.+...+.
T Consensus        85 ~~~~~-A~~~~~~a~~~~p~  103 (117)
T d1elwa_          85 NRFEE-AKRTYEEGLKHEAN  103 (117)
T ss_dssp             TCHHH-HHHHHHHHHTTCTT
T ss_pred             cCHHH-HHHHHHHHHHhCCC
Confidence            64443 34455555555443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.11  E-value=2.6e-10  Score=98.30  Aligned_cols=86  Identities=14%  Similarity=0.145  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 015006          236 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  315 (414)
Q Consensus       236 ~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~  315 (414)
                      .-+.+.|.++++.|+|++|+..|.+||+++|.++.+|+++|.||..+|+|++|+.+|++|++++|++ ..+...+..+..
T Consensus         5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~-~~a~~~lg~~~~   83 (201)
T d2c2la1           5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS-VKAHFFLGQCQL   83 (201)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCc-HHHHHHHHHHHH
Confidence            3466899999999999999999999999999999999999999999999999999999999999998 678888888776


Q ss_pred             HHHHHHH
Q 015006          316 QRQEVES  322 (414)
Q Consensus       316 ~~~~~~~  322 (414)
                      .+....+
T Consensus        84 ~l~~~~~   90 (201)
T d2c2la1          84 EMESYDE   90 (201)
T ss_dssp             HTTCHHH
T ss_pred             HCCCHHH
Confidence            6654443

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.08  E-value=4.1e-11  Score=94.50  Aligned_cols=44  Identities=25%  Similarity=0.482  Sum_probs=37.1

Q ss_pred             ccccCCcCcEEEEEEcCCCcCCCC-CCCCCCCCCeeeEEEEeeEE
Q 015006            2 GIGTMTREEKAVIYVTSQYLTPSP-LMPVVEGCEEVHFEVELVHL   45 (414)
Q Consensus         2 ~~~~m~~Ge~~~~~i~~~~~~g~~-~~~~ip~~~~l~~~vel~~~   45 (414)
                      ||.+|++||+++|+|||++|||.. .++.||||++|+|+|+|+++
T Consensus        66 ~l~~M~~Ge~~~~~ip~~layG~~g~~~~IPp~s~lif~ieLl~i  110 (111)
T d1kt1a2          66 GVATMKKGEICHLLCKPEYAYGATGSLPKIPSNATLFFEVELLDF  110 (111)
T ss_dssp             STTTCCTTCCEEEEC----CCCTTTCTTTSCTTCCCEEEEEEEEE
T ss_pred             eehhccCCcEEEEEECHHHhCCCCCCCCcCCcCCeEEEEEEEEEE
Confidence            789999999999999999999985 45789999999999999987

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.08  E-value=3.7e-11  Score=95.48  Aligned_cols=46  Identities=22%  Similarity=0.276  Sum_probs=41.5

Q ss_pred             ccccCCcCcEEEEEEcCCCcCCCCC-CC-CCCCCCeeeEEEEeeEEEe
Q 015006            2 GIGTMTREEKAVIYVTSQYLTPSPL-MP-VVEGCEEVHFEVELVHLIQ   47 (414)
Q Consensus         2 ~~~~m~~Ge~~~~~i~~~~~~g~~~-~~-~ip~~~~l~~~vel~~~~~   47 (414)
                      ||.+|++||+++|+|||+||||+.+ ++ .||||++|+|+|+|++|.+
T Consensus        67 ~l~~M~~Ge~~~v~ip~~~ayG~~g~~~~~Ipp~a~l~f~ieLl~~~k  114 (115)
T d1kt1a3          67 ALEKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEK  114 (115)
T ss_dssp             HHTTCCTTCEEEEEECGGGSSCTTCBTTTTBCTTCCEEEEEEEEEEEC
T ss_pred             hhccchhhceeEEEeCHHHCcCCCCCCCCCcCcCCeEEEEEEEEEEEe
Confidence            7899999999999999999999854 33 6999999999999999863

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=8.5e-10  Score=92.25  Aligned_cols=86  Identities=14%  Similarity=0.097  Sum_probs=75.6

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                      +..+...|.++++.|+|++|+..+.++|+++|+++.+|+++|.+++.+|++++|+.+|++|++++|++ ..+...+..+.
T Consensus        10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~-~~a~~~~g~~~   88 (159)
T d1a17a_          10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY-IKGYYRRAASN   88 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccc-hHHHHHHHHHH
Confidence            34456789999999999999999999999999999999999999999999999999999999999998 56777777766


Q ss_pred             HHHHHHH
Q 015006          315 KQRQEVE  321 (414)
Q Consensus       315 ~~~~~~~  321 (414)
                      ..+....
T Consensus        89 ~~~g~~~   95 (159)
T d1a17a_          89 MALGKFR   95 (159)
T ss_dssp             HHTTCHH
T ss_pred             HHcCCHH
Confidence            5554433

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=5.1e-11  Score=93.31  Aligned_cols=44  Identities=20%  Similarity=0.385  Sum_probs=40.7

Q ss_pred             ccccCCcCcEEEEEEcCCCcCCCCC-CCCCCCCCeeeEEEEeeEE
Q 015006            2 GIGTMTREEKAVIYVTSQYLTPSPL-MPVVEGCEEVHFEVELVHL   45 (414)
Q Consensus         2 ~~~~m~~Ge~~~~~i~~~~~~g~~~-~~~ip~~~~l~~~vel~~~   45 (414)
                      ||.+|++||+++|+|||++|||..+ ++.||||++|+|+|+|+++
T Consensus        62 ~l~~M~~Ge~~~~~ip~~laYG~~g~~~~IPp~s~lif~ieL~~v  106 (107)
T d2ppna1          62 GVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKL  106 (107)
T ss_dssp             HHTTCCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEE
T ss_pred             hhcCccCCCEEEEEECHHHhCCCCCCCCCCCcCCeEEEEEEEEEE
Confidence            7899999999999999999999865 4679999999999999986

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=7.3e-11  Score=94.29  Aligned_cols=45  Identities=29%  Similarity=0.293  Sum_probs=41.7

Q ss_pred             ccccCCcCcEEEEEEcCCCcCCCCC-CCCCCCCCeeeEEEEeeEEE
Q 015006            2 GIGTMTREEKAVIYVTSQYLTPSPL-MPVVEGCEEVHFEVELVHLI   46 (414)
Q Consensus         2 ~~~~m~~Ge~~~~~i~~~~~~g~~~-~~~ip~~~~l~~~vel~~~~   46 (414)
                      ||.+|++||+++|+|||++|||..+ ++.||||++|+|+|||+++.
T Consensus        73 ~l~~M~~Ge~~~~~ip~~laYG~~g~~~~IPp~s~LifeIeLl~v~  118 (120)
T d1q1ca1          73 AIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFK  118 (120)
T ss_dssp             HHTTCCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             eeccccCCcEEEEEECHHHhCCCcCCCCCCCcCCcEEEEEEEEEEe
Confidence            7899999999999999999999854 57899999999999999985

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=6.4e-11  Score=94.38  Aligned_cols=49  Identities=18%  Similarity=0.327  Sum_probs=43.5

Q ss_pred             ccccCCcCcEEEEEEcCCCcCCCCCC--CCCCCCCeeeEEEEeeEEEeeee
Q 015006            2 GIGTMTREEKAVIYVTSQYLTPSPLM--PVVEGCEEVHFEVELVHLIQVRD   50 (414)
Q Consensus         2 ~~~~m~~Ge~~~~~i~~~~~~g~~~~--~~ip~~~~l~~~vel~~~~~~~d   50 (414)
                      ||.+|++||+++|+|||++|||..+.  ..|||+++|+|+|+|++|.+.+|
T Consensus        67 ~l~~M~~Ge~~~i~ip~~~ayG~~g~~~~~Ipp~s~l~f~veL~~~~~~kd  117 (117)
T d1q1ca2          67 AIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKE  117 (117)
T ss_dssp             HHTTCCTTCEEEEEECGGGTTTTTCBGGGTBCTTCCEEEEEEEEEEECCCC
T ss_pred             hhhcchhhCeEEEEECHHHhCcccCCCCCccCcCCeEEEEEEEEEEEeCCC
Confidence            68999999999999999999998553  47999999999999999986543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=5.4e-10  Score=90.21  Aligned_cols=68  Identities=12%  Similarity=0.269  Sum_probs=64.6

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      +..+-|+|.++++.++|++|+.+++++|+++|+++.+++++|.+|..+|+|++|+.+|++|++++|.+
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~   71 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN   71 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCccc
Confidence            34567899999999999999999999999999999999999999999999999999999999999876

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.00  E-value=1.2e-10  Score=92.16  Aligned_cols=44  Identities=23%  Similarity=0.320  Sum_probs=40.6

Q ss_pred             ccccCCcCcEEEEEEcCCCcCCCCC-CCCCCCCCeeeEEEEeeEE
Q 015006            2 GIGTMTREEKAVIYVTSQYLTPSPL-MPVVEGCEEVHFEVELVHL   45 (414)
Q Consensus         2 ~~~~m~~Ge~~~~~i~~~~~~g~~~-~~~ip~~~~l~~~vel~~~   45 (414)
                      ||.+|++||+++|+|||++|||..+ ++.||||++|+|+|+|++.
T Consensus        68 ~l~~M~~G~~~~~~iP~~laYG~~g~~~~IP~~s~Lif~ieLl~I  112 (113)
T d1yata_          68 GIPKLSVGEKARLTIPGPYAYGPRGFPGLIPPNSTLVFDVELLKV  112 (113)
T ss_dssp             HGGGCCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEE
T ss_pred             hcccccCCCEEEEEechHHeecCcCCCCccCcCCeEEEEEEEEEe
Confidence            7899999999999999999999965 4679999999999999985

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2.5e-10  Score=90.67  Aligned_cols=44  Identities=25%  Similarity=0.332  Sum_probs=40.3

Q ss_pred             ccccCCcCcEEEEEEcCCCcCCCCCC--CCCCCCCeeeEEEEeeEE
Q 015006            2 GIGTMTREEKAVIYVTSQYLTPSPLM--PVVEGCEEVHFEVELVHL   45 (414)
Q Consensus         2 ~~~~m~~Ge~~~~~i~~~~~~g~~~~--~~ip~~~~l~~~vel~~~   45 (414)
                      ||.+|++||+++|+|||++|||+.+.  +.||||++|+|+|+|+++
T Consensus        70 ~v~~M~~Ge~~~~~ip~~~ayG~~g~~~~~Ipp~s~L~feieLl~v  115 (116)
T d1pbka_          70 ALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELVDI  115 (116)
T ss_dssp             HHTTCCTTCEEEEEECGGGTTTTTCBGGGTBCTTCCEEEEEEEEEE
T ss_pred             echhhcCCcEEEEEECHHHhCCccCCCCCCcCcCCeEEEEEEEEEE
Confidence            78999999999999999999998554  579999999999999985

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.92  E-value=3.7e-10  Score=94.78  Aligned_cols=46  Identities=11%  Similarity=0.210  Sum_probs=41.9

Q ss_pred             ccccCCcCcEEEEEEcCCCcCCCC-CCCCCCCCCeeeEEEEeeEEEe
Q 015006            2 GIGTMTREEKAVIYVTSQYLTPSP-LMPVVEGCEEVHFEVELVHLIQ   47 (414)
Q Consensus         2 ~~~~m~~Ge~~~~~i~~~~~~g~~-~~~~ip~~~~l~~~vel~~~~~   47 (414)
                      ||.+|++||+++|+|||++|||.. .++.||||++|+|+|+|+++.+
T Consensus        94 ~l~~M~~Ge~~~v~iPp~laYG~~g~~~~IPp~s~LifeIeLl~i~~  140 (160)
T d1jvwa_          94 ALQLMREGDRWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELISIKD  140 (160)
T ss_dssp             HHTTCCTTCEEEEEECGGGTTTTTCSSSSSCTTCCEEEEEEEEEEGG
T ss_pred             HhcCccccceeEEEeCHHHCcCCCCCCCCcCcCCcEEEEEEEEEEec
Confidence            789999999999999999999985 4577999999999999999853

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.91  E-value=2.7e-09  Score=90.12  Aligned_cols=90  Identities=11%  Similarity=0.055  Sum_probs=81.7

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      .+..+.++|..+++.|+|.+|+..|++||.    +.|.+           ..+|+++|.||..+++|++|+.++.+++++
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~----~~p~~-----------~~a~~~~g~~~~~l~~~~~A~~~~~~al~l  140 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALE----IDPSN-----------TKALYRRAQGWQGLKEYDQALADLKKAQEI  140 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----TCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhh----hhhhh-----------hhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence            466777899999999999999999999999    78877           679999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHH
Q 015006          265 NPAHVKGLYRRGMAYMALGEFEEAQ  289 (414)
Q Consensus       265 dp~~~ka~~r~g~a~~~l~~~~eA~  289 (414)
                      +|++..++..++.+...+..+.++.
T Consensus       141 ~p~n~~~~~~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         141 APEDKAIQAELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988877766654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.86  E-value=5.9e-09  Score=87.95  Aligned_cols=88  Identities=16%  Similarity=0.096  Sum_probs=79.0

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      .+..+.+.|..+++.|+|.+|+..|+++|.    ++|.+           ..+|+++|.||..+|+|.+|+.++.+++.+
T Consensus        63 ~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~----l~p~~-----------~~a~~~~~~~~~~l~~~~~A~~~~~~al~l  127 (168)
T d1kt1a1          63 LLAAFLNLAMCYLKLREYTKAVECCDKALG----LDSAN-----------EKGLYRRGEAQLLMNEFESAKGDFEKVLEV  127 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             HHHHHHhHHHHHHHhhhcccchhhhhhhhh----cccch-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            355677899999999999999999999999    67877           789999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHH
Q 015006          265 NPAHVKGLYRRGMAYMALGEFEE  287 (414)
Q Consensus       265 dp~~~ka~~r~g~a~~~l~~~~e  287 (414)
                      +|+|..++..++.+...++.+.+
T Consensus       128 ~P~n~~~~~~l~~~~~~~~~~~e  150 (168)
T d1kt1a1         128 NPQNKAARLQIFMCQKKAKEHNE  150 (168)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHhHHH
Confidence            99999999999888777766544

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.82  E-value=6.1e-10  Score=89.60  Aligned_cols=44  Identities=14%  Similarity=0.174  Sum_probs=39.3

Q ss_pred             ccccCCcCcEEEEEEcCCCcCCCCC------CCCCCCCCeeeEEEEeeEE
Q 015006            2 GIGTMTREEKAVIYVTSQYLTPSPL------MPVVEGCEEVHFEVELVHL   45 (414)
Q Consensus         2 ~~~~m~~Ge~~~~~i~~~~~~g~~~------~~~ip~~~~l~~~vel~~~   45 (414)
                      ||..|++||+++|+|||++|||+.+      ++.||||++|+|+|||+.+
T Consensus        75 ~l~~M~~G~k~~v~iP~~laYG~~G~~~~~~~~~IPp~s~LifeieLl~~  124 (125)
T d1u79a_          75 GIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  124 (125)
T ss_dssp             TBCCCBTTCEEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             hcccccCCCEEEEEECHHHCCCCCCcCCcCCCCcCCcCCeEEEEEEEEEe
Confidence            6789999999999999999999743      3669999999999999974

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.1e-08  Score=86.60  Aligned_cols=89  Identities=11%  Similarity=0.034  Sum_probs=80.3

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +..+.+.|..+++.|+|.+|+..|.+||.    ++|.+           ..+++++|.||..+|+|++|+.++.+|++++
T Consensus        62 ~~~~~nla~~y~k~~~~~~A~~~~~~al~----~~p~~-----------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  126 (170)
T d1p5qa1          62 LASHLNLAMCHLKLQAFSAAIESCNKALE----LDSNN-----------EKGLSRRGEAHLAVNDFELARADFQKVLQLY  126 (170)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhhhcccccchhhhhhh----ccccc-----------hhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence            45566789999999999999999999999    68877           7799999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHH
Q 015006          266 PAHVKGLYRRGMAYMALGEFEEAQ  289 (414)
Q Consensus       266 p~~~ka~~r~g~a~~~l~~~~eA~  289 (414)
                      |+|+.+...++.++..+.++.+..
T Consensus       127 P~n~~~~~~l~~~~~~~~~~~~~e  150 (170)
T d1p5qa1         127 PNNKAAKTQLAVCQQRIRRQLARE  150 (170)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988877666543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.78  E-value=7.8e-09  Score=85.84  Aligned_cols=84  Identities=14%  Similarity=0.076  Sum_probs=76.0

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      .+..+.+.|..+++.|+|.+|+..|.+||.    ++|.+           ..+|+++|.||..+|+|.+|+.++.+++++
T Consensus        66 ~~~~~~Nla~~~~~l~~~~~Al~~~~~al~----~~p~~-----------~ka~~~~g~~~~~lg~~~~A~~~~~~al~l  130 (153)
T d2fbna1          66 EISCNLNLATCYNKNKDYPKAIDHASKVLK----IDKNN-----------VKALYKLGVANMYFGFLEEAKENLYKAASL  130 (153)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHhcccchhhhhhhcccc----ccchh-----------hhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence            345677899999999999999999999999    67877           779999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcC
Q 015006          265 NPAHVKGLYRRGMAYMALG  283 (414)
Q Consensus       265 dp~~~ka~~r~g~a~~~l~  283 (414)
                      +|+|..+...++.+...+.
T Consensus       131 ~P~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1         131 NPNNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             STTCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHH
Confidence            9999999988888776553

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=9.7e-09  Score=101.89  Aligned_cols=113  Identities=9%  Similarity=-0.037  Sum_probs=79.6

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      +..+...|..+.+.|++..|+..|.+++...                 ...++.|+|.++..+++|++|+.+|.+|+.++
T Consensus       120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----------------~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~  182 (497)
T d1ya0a1         120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYI-----------------CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV  182 (497)
T ss_dssp             -----------------------CCHHHHHH-----------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC-----------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence            3345566777777777777777777777621                 13588999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 015006          266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  316 (414)
Q Consensus       266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~  316 (414)
                      |++..+|+++|.++...|++.+|+..|.+||.++|.. ..++.+|..+-.+
T Consensus       183 P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~-~~a~~nL~~~~~~  232 (497)
T d1ya0a1         183 PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPF-PAASTNLQKALSK  232 (497)
T ss_dssp             TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCC-HHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998 6788888766443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.67  E-value=2.4e-08  Score=91.51  Aligned_cols=107  Identities=9%  Similarity=0.089  Sum_probs=90.4

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  264 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~  264 (414)
                      .+..+...|+.+...|+|.+|+..|.+|+.+.....  +       ......+|.|+|.||.++++|++|+..+.+++++
T Consensus        36 Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~--~-------~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~  106 (290)
T d1qqea_          36 AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAG--N-------EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI  106 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTT--C-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC--C-------CHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHH
Confidence            466788999999999999999999999999654322  1       1123679999999999999999999999999988


Q ss_pred             CCCc------HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCC
Q 015006          265 NPAH------VKGLYRRGMAYMA-LGEFEEAQRDFEMMMKVDK  300 (414)
Q Consensus       265 dp~~------~ka~~r~g~a~~~-l~~~~eA~~~~~~al~l~P  300 (414)
                      .+.+      ..++.++|.++.. ++++++|+..|++|+++.+
T Consensus       107 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~  149 (290)
T d1qqea_         107 FTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYA  149 (290)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             hhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHH
Confidence            6554      7889999999865 7999999999999998854

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.64  E-value=2.1e-07  Score=73.32  Aligned_cols=83  Identities=18%  Similarity=0.239  Sum_probs=71.5

Q ss_pred             hHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 015006          235 NLLHLNVAACLLKLGE---CRKSIEACNKVLDANPAHV-KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAAL  310 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~---~~~A~~~~~~al~~dp~~~-ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l  310 (414)
                      ....+|.|.|+.+..+   ..+|+..+..+++.+|.+. .++|.+|.+|+++|+|++|+..++++|+++|+| ..+....
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n-~qA~~L~  113 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN-KQVGALK  113 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCc-HHHHHHH
Confidence            4577899999998754   5789999999999999775 799999999999999999999999999999999 6677777


Q ss_pred             HHHHHHHH
Q 015006          311 SKLKKQRQ  318 (414)
Q Consensus       311 ~~~~~~~~  318 (414)
                      ..++.++.
T Consensus       114 ~~Ie~~~~  121 (124)
T d2pqrb1         114 SMVEDKIQ  121 (124)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            76766554

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=5.4e-08  Score=77.50  Aligned_cols=84  Identities=12%  Similarity=0.105  Sum_probs=67.8

Q ss_pred             HHHHHhhhccccc---cccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015006          186 AEKIRVTGNRLFK---EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  262 (414)
Q Consensus       186 a~~~k~~Gn~~fk---~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al  262 (414)
                      +..+.+.|..+++   .+++.+|+..|++++.    ..|.+         ....+++|+|.||.++|+|++|+.+++++|
T Consensus        33 ~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~----~~~~~---------~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL   99 (122)
T d1nzna_          33 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP----KGSKE---------EQRDYVFYLAVGNYRLKEYEKALKYVRGLL   99 (122)
T ss_dssp             HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT----TSCHH---------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHh----ccCCc---------hHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            4456677888776   4467789999999998    44432         124589999999999999999999999999


Q ss_pred             HhCCCcHHHHHHHHHHHHHc
Q 015006          263 DANPAHVKGLYRRGMAYMAL  282 (414)
Q Consensus       263 ~~dp~~~ka~~r~g~a~~~l  282 (414)
                      +++|++..|+..++.+...+
T Consensus       100 ~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_         100 QTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             HHCTTCHHHHHHHHHHHHHH
T ss_pred             HhCcCCHHHHHHHHHHHHHH
Confidence            99999999998887766543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.59  E-value=9.1e-08  Score=78.50  Aligned_cols=72  Identities=17%  Similarity=0.207  Sum_probs=62.6

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          245 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMAL----------GEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       245 ~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l----------~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                      +-+++.|++|+..+++|++++|+++.+++++|.++..+          +.+++|+..|++|++++|++ ..+...+..+.
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~-~~a~~~lG~~y   85 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK-DEAVWCIGNAY   85 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchh-hHHHhhHHHHH
Confidence            45677899999999999999999999999999999865          55689999999999999998 67887887775


Q ss_pred             HHH
Q 015006          315 KQR  317 (414)
Q Consensus       315 ~~~  317 (414)
                      ..+
T Consensus        86 ~~~   88 (145)
T d1zu2a1          86 TSF   88 (145)
T ss_dssp             HHH
T ss_pred             HHc
Confidence            443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.57  E-value=2.2e-07  Score=86.35  Aligned_cols=116  Identities=20%  Similarity=0.128  Sum_probs=100.2

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCC--HHHHHHHHHHHHH
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE--CRKSIEACNKVLD  263 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~--~~~A~~~~~~al~  263 (414)
                      ...+...|+.+...|.+.+|+..|++++.    ..|.+           ..++.+++.++..+++  +.+|+..+.++++
T Consensus        73 l~~l~~~~~~~~~~~~~~~al~~~~~~l~----~~pk~-----------~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~  137 (334)
T d1dcea1          73 LQHLETEKSPEESAALVKAELGFLESCLR----VNPKS-----------YGTWHHRCWLLSRLPEPNWARELELCARFLE  137 (334)
T ss_dssp             HHHHHTTSCHHHHHHHHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred             HHHHhhhcchHHHHHHHHHHHHHHHHHHH----hCCCc-----------HHHHHHhhHHHHHhccccHHHHHHHHHHHHh
Confidence            45566777788888999999999999999    67777           6788999999888775  8999999999999


Q ss_pred             hCCCcHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 015006          264 ANPAHVKGL-YRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  317 (414)
Q Consensus       264 ~dp~~~ka~-~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~  317 (414)
                      ++|.+..++ +++|.++...+.+++|+..++++++++|++ ..+...+..+...+
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~-~~a~~~l~~~~~~~  191 (334)
T d1dcea1         138 ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN-YSSWHYRSCLLPQL  191 (334)
T ss_dssp             HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC-HHHHHHHHHHHHHH
T ss_pred             hCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHh
Confidence            999999986 578899999999999999999999999998 66777777765443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.55  E-value=1.2e-07  Score=86.77  Aligned_cols=109  Identities=13%  Similarity=0.107  Sum_probs=91.3

Q ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 015006          185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK-LGECRKSIEACNKVLD  263 (414)
Q Consensus       185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~k-l~~~~~A~~~~~~al~  263 (414)
                      .+..+.+.|+.+.+.|++.+|+..|.+++.++.....         ......++.++|.++.. +++|++|+..+.+|++
T Consensus        76 ~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~  146 (290)
T d1qqea_          76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ---------FRRGANFKFELGEILENDLHDYAKAIDCYELAGE  146 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhccc---------chhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Confidence            5778899999999999999999999999997654321         11235678899988865 6999999999999998


Q ss_pred             hCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          264 ANPA------HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       264 ~dp~------~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      +.+.      ...++.++|.++..+|+|++|+..|++++.+.|.+
T Consensus       147 l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~  191 (290)
T d1qqea_         147 WYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN  191 (290)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred             HHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccc
Confidence            7432      36679999999999999999999999999998876

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.51  E-value=3.4e-07  Score=82.86  Aligned_cols=92  Identities=13%  Similarity=0.114  Sum_probs=81.6

Q ss_pred             hccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 015006          193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGL  272 (414)
Q Consensus       193 Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~  272 (414)
                      +..+++.|++.+|+..|+++++    ..|.+           ..++.+++.++...|+|++|+..++++++++|++..++
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~----~~P~d-----------~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~   67 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIK----ASPKD-----------ASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA   67 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHH----TCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHH
Confidence            4567899999999999999999    88988           77999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015006          273 YRRGMAYMALGEFEEAQRDFEMMMKVD  299 (414)
Q Consensus       273 ~r~g~a~~~l~~~~eA~~~~~~al~l~  299 (414)
                      ..++.++...+..+++...+.++..+.
T Consensus        68 ~~l~~ll~a~~~~~~a~~~~~~~~~~~   94 (264)
T d1zbpa1          68 SQLRHLVKAAQARKDFAQGAATAKVLG   94 (264)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCCEECCC
T ss_pred             HHHHHHHHhccccHHHHHHhhhhhccc
Confidence            999999988888877776655544443

>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Escherichia coli [TaxId: 562]

Probab=98.39  E-value=2.9e-07  Score=71.06  Aligned_cols=85  Identities=16%  Similarity=0.266  Sum_probs=65.7

Q ss_pred             CCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCCeEEEEecCCCccccCCCCCCCC
Q 015006           75 LHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVP  154 (414)
Q Consensus        75 ~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~~ip  154 (414)
                      ..||.|+|+|+|+.   +|..+...    ..+.+.|.+|.+.+++||+.+|.+|++||...|.+.--..|..     .--
T Consensus        16 ~~GD~v~id~~~~~---dG~~~~~~----~~~~~~~~lg~~~~~~gf~~~L~G~k~Ge~~~~~~~~P~d~~~-----~~l   83 (106)
T d1l1pa_          16 EAEDRVTIDFTGSV---DGEEFEGG----KASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHA-----ENL   83 (106)
T ss_dssp             CTTEEEEEEEECCS---SSSCCSTT----EEEEEEEEETTSCCCTTHHHHTTSCCTTCCEEEEECCCSSCCC-----TTT
T ss_pred             cCCCEEEEEEEEEE---CCEECCCC----cccceEEEecCCCccchHHHHhcCCCCCceEEEEEEeCCCCCc-----hhh
Confidence            47999999999985   37776322    2346999999999999999999999999999998852222322     123


Q ss_pred             CCcceEEEEEEcccCCC
Q 015006          155 EGAHIQWEIELLGFEKP  171 (414)
Q Consensus       155 ~~~~l~~eieL~~~~~~  171 (414)
                      .|.++.|.|+|.++...
T Consensus        84 aGK~v~f~V~v~~i~~~  100 (106)
T d1l1pa_          84 KGKAAKFAINLKKVEER  100 (106)
T ss_dssp             TTCCEEEEEEEEEEECC
T ss_pred             CCCEEEEEEEEEEeccc
Confidence            57889999999998664

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.35  E-value=2.3e-06  Score=79.23  Aligned_cols=121  Identities=12%  Similarity=-0.002  Sum_probs=88.3

Q ss_pred             cHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHH----------HcCCHHHHHHHHHHHHHhCCCcHH
Q 015006          201 KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLL----------KLGECRKSIEACNKVLDANPAHVK  270 (414)
Q Consensus       201 ~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~----------kl~~~~~A~~~~~~al~~dp~~~k  270 (414)
                      .+++|+..|.++|.    .+|.+           ..++++++.++.          ..+.+.+|+..++++++.+|.+..
T Consensus        44 ~~~~al~~~~~~l~----~~P~~-----------~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~  108 (334)
T d1dcea1          44 LDESVLELTSQILG----ANPDF-----------ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG  108 (334)
T ss_dssp             CSHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             ccHHHHHHHHHHHH----HCCCc-----------HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHH
Confidence            35899999999999    78887           445555555544          445589999999999999999999


Q ss_pred             HHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 015006          271 GLYRRGMAYMALGE--FEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPG  337 (414)
Q Consensus       271 a~~r~g~a~~~l~~--~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (414)
                      +++.+|.++..+++  +++|+..++++++++|.+.......+..+..... ........+...+...+.
T Consensus       109 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~-~~~~Al~~~~~~i~~~p~  176 (334)
T d1dcea1         109 TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAV-APAEELAFTDSLITRNFS  176 (334)
T ss_dssp             HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCC-CHHHHHHHHHTTTTTTCC
T ss_pred             HHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhcc-ccHHHHHHHHHHHHcCCC
Confidence            99999999999875  8999999999999999984322233333332222 223334455666665543

>d1t11a3 d.26.1.1 (A:135-247) Trigger factor PPIase domain {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Vibrio cholerae [TaxId: 666]

Probab=98.31  E-value=1.6e-07  Score=73.59  Aligned_cols=84  Identities=14%  Similarity=0.186  Sum_probs=64.5

Q ss_pred             CCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCCeEEEEecCCCccccCCCCCCCC
Q 015006           75 LHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVP  154 (414)
Q Consensus        75 ~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~~ip  154 (414)
                      ..||.|+|+|.|++   +|..+...    ....+.|.+|.+.+++||+.+|.+|++||...|.+.--..|....     -
T Consensus        25 ~~gD~v~id~~~~~---dG~~~~~~----~~~~~~~~lg~~~~~~~f~~~L~G~k~Ge~~~~~~~~Ped~~~~~-----l   92 (113)
T d1t11a3          25 ENGKRVSIDFVGSI---DGVEFEGG----KAENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAEN-----L   92 (113)
T ss_dssp             CTTCEEEEEEEEES---SSSCCTTC----EEEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTT-----T
T ss_pred             cCCCEEEEEEEEEE---CCEEccCC----ccceEEEEeccccccccHHHhhcCCcCCCEEEEEEeCCCcCCccc-----c
Confidence            58999999999996   37776332    245799999999999999999999999999887774222232211     1


Q ss_pred             CCcceEEEEEEcccCC
Q 015006          155 EGAHIQWEIELLGFEK  170 (414)
Q Consensus       155 ~~~~l~~eieL~~~~~  170 (414)
                      .|.++.|.|++.++..
T Consensus        93 aGk~~~f~v~v~~Ik~  108 (113)
T d1t11a3          93 KGKAAKFAIKVNKVEA  108 (113)
T ss_dssp             SSCEEEECCCEEEEEE
T ss_pred             CCCeEEEEEEEEEEEe
Confidence            5778999999988764

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.23  E-value=1.4e-06  Score=79.40  Aligned_cols=104  Identities=14%  Similarity=0.040  Sum_probs=86.8

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA-  264 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~-  264 (414)
                      +..+...|..+...|++..|...|.+++.    ..+.+       .......+.|+|.+++.+|++.+|+..+.+++.. 
T Consensus       213 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  281 (366)
T d1hz4a_         213 SNANKVRVIYWQMTGDKAAAANWLRHTAK----PEFAN-------NHFLQGQWRNIARAQILLGEFEPAEIVLEELNENA  281 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHSCC----CCCTT-------CGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHH----hcccc-------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            44566778888899999999999999887    33333       1233567889999999999999999999999844 


Q ss_pred             -----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 015006          265 -----NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK  300 (414)
Q Consensus       265 -----dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P  300 (414)
                           .|..+.+++.+|.+|..+|++++|+..|++|+++.+
T Consensus       282 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         282 RSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             hhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence                 466789999999999999999999999999999854

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.21  E-value=4e-06  Score=76.17  Aligned_cols=104  Identities=15%  Similarity=0.064  Sum_probs=87.4

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      ++...-+|..++..|++++|+..|++++.    ..|.++.      .....++.++|.+|..+|+|++|+..+.+++.+.
T Consensus        12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~----~~~~~~~------~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~   81 (366)
T d1hz4a_          12 AEFNALRAQVAINDGNPDEAERLAKLALE----ELPPGWF------YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA   81 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TCCTTCH------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHh----hCcCCCc------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            44555578889999999999999999999    4555422      2235689999999999999999999999999876


Q ss_pred             CC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015006          266 PA------HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  299 (414)
Q Consensus       266 p~------~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~  299 (414)
                      +.      ...+++.++.++...+++..|...+.+++.+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~  121 (366)
T d1hz4a_          82 RQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI  121 (366)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            43      36788999999999999999999999999863

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.15  E-value=1.9e-06  Score=71.04  Aligned_cols=61  Identities=16%  Similarity=0.166  Sum_probs=54.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCc------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 015006          240 NVAACLLKLGECRKSIEACNKVLDANPAH------------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK  300 (414)
Q Consensus       240 N~a~~~~kl~~~~~A~~~~~~al~~dp~~------------~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P  300 (414)
                      ..|..++..|+|++|+..|++||++.|++            +.+|.++|.+|..+|+|++|+.++++++++.|
T Consensus        14 ~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1          14 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence            34888889999999999999999998864            46899999999999999999999999998754

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.08  E-value=7.7e-06  Score=73.59  Aligned_cols=70  Identities=17%  Similarity=0.142  Sum_probs=62.3

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          244 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       244 ~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                      -.++.|++++|+..+.++++.+|.++.++..+|++|+..|++++|+..|+++++++|++ ..+...+..+.
T Consensus         5 ~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~-~~~~~~l~~ll   74 (264)
T d1zbpa1           5 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY-LPGASQLRHLV   74 (264)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG-HHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999997 45555555543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=1.3e-05  Score=78.74  Aligned_cols=83  Identities=10%  Similarity=-0.026  Sum_probs=76.8

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  265 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d  265 (414)
                      ...+...|..+..+++|.+|+..|.+|+.    +.|.+           ..+|+|+|.++...|++.+|+.+|.+||.++
T Consensus       152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~----l~P~~-----------~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~  216 (497)
T d1ya0a1         152 QHCLVHLGDIARYRNQTSQAESYYRHAAQ----LVPSN-----------GQPYNQLAILASSKGDHLTTIFYYCRSIAVK  216 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTB-----------SHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHH----HCCCc-----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence            45677899999999999999999999999    67877           7799999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcC
Q 015006          266 PAHVKGLYRRGMAYMALG  283 (414)
Q Consensus       266 p~~~ka~~r~g~a~~~l~  283 (414)
                      |..+.|+.+++.++....
T Consensus       217 ~~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         217 FPFPAASTNLQKALSKAL  234 (497)
T ss_dssp             BCCHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHhh
Confidence            999999999999987654

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.89  E-value=5.2e-05  Score=63.81  Aligned_cols=81  Identities=10%  Similarity=-0.027  Sum_probs=70.5

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----------------------HHHHHHHHHHHHHcCCHHHHHHHH
Q 015006          235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAH----------------------VKGLYRRGMAYMALGEFEEAQRDF  292 (414)
Q Consensus       235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~----------------------~ka~~r~g~a~~~l~~~~eA~~~~  292 (414)
                      ...+.+.|......|++++|+..|.+||.+.+..                      ..++.+++.++..+|++++|+..+
T Consensus        11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~   90 (179)
T d2ff4a2          11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL   90 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            4578889999999999999999999999987533                      478999999999999999999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHH
Q 015006          293 EMMMKVDKSSEPDATAALSKLKKQ  316 (414)
Q Consensus       293 ~~al~l~P~n~~~~~~~l~~~~~~  316 (414)
                      ++++.++|.+ ..+...+..+...
T Consensus        91 ~~al~~~P~~-e~~~~~l~~al~~  113 (179)
T d2ff4a2          91 EALTFEHPYR-EPLWTQLITAYYL  113 (179)
T ss_dssp             HHHHHHSTTC-HHHHHHHHHHHHT
T ss_pred             HHHHHhCCcc-HHHHHHHHHHHHH
Confidence            9999999998 5677777666543

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.78  E-value=3.6e-05  Score=60.16  Aligned_cols=65  Identities=11%  Similarity=0.070  Sum_probs=51.5

Q ss_pred             ccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 015006          200 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA  278 (414)
Q Consensus       200 g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a  278 (414)
                      .+..+|+..+..+++    ..|..          ...+++++|.+|+++|+|.+|+.+|.++|+++|+|..|..-+-.+
T Consensus        52 ~d~~~gI~lLe~~~~----~~p~~----------~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~~I  116 (124)
T d2pqrb1          52 NDERLGVKILTDIYK----EAESR----------RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV  116 (124)
T ss_dssp             HHHHHHHHHHHHHHH----HCGGG----------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh----cCchh----------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHHHH
Confidence            456677888877776    23322          246899999999999999999999999999999999987655444

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.70  E-value=0.00012  Score=66.68  Aligned_cols=66  Identities=8%  Similarity=-0.047  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCC
Q 015006          237 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA-LGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       237 ~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~-l~~~~eA~~~~~~al~l~P~n  302 (414)
                      ++...+....+.++++.|+..+.+++...|.+...+...|..... .++.+.|...|+++++..|++
T Consensus       136 ~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~  202 (308)
T d2onda1         136 VYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI  202 (308)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhh
Confidence            344444444555555555555555555555555555544443322 345555555555555555554

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.62  E-value=0.0004  Score=62.92  Aligned_cols=97  Identities=7%  Similarity=-0.088  Sum_probs=77.9

Q ss_pred             hhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCcH
Q 015006          191 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK-LGECRKSIEACNKVLDANPAHV  269 (414)
Q Consensus       191 ~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~k-l~~~~~A~~~~~~al~~dp~~~  269 (414)
                      ..++...+.|++..|...|.+|+.    ..|.+           ..++.+.|..... .++.+.|...+++++...|.++
T Consensus       139 ~~~~~~~~~~~~~~ar~i~~~al~----~~~~~-----------~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~  203 (308)
T d2onda1         139 QYMKFARRAEGIKSGRMIFKKARE----DARTR-----------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP  203 (308)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHT----STTCC-----------THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhH
Confidence            344444555677777777777777    44444           4466677765444 5899999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006          270 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  302 (414)
Q Consensus       270 ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n  302 (414)
                      ..+...+..+...|+++.|+..|++|++..|.+
T Consensus       204 ~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~  236 (308)
T d2onda1         204 EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP  236 (308)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999999999987754

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.38  E-value=0.00092  Score=58.64  Aligned_cols=97  Identities=18%  Similarity=0.205  Sum_probs=82.1

Q ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 015006          186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK----LGECRKSIEACNKV  261 (414)
Q Consensus       186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~k----l~~~~~A~~~~~~a  261 (414)
                      ++.+...|..++.+++|.+|+..|++|.+    .  .+           ..++.++|.+|..    .+++..|...+..+
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~----~--g~-----------~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a   64 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACD----L--KE-----------NSGCFNLGVLYYQGQGVEKNLKKAASFYAKA   64 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----T--TC-----------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----C--CC-----------HHHHHHHHHHHHcCCCcchhHHHHHHhhccc
Confidence            45677889999999999999999999987    2  22           5688999999998    77999999999988


Q ss_pred             HHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCC
Q 015006          262 LDANPAHVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKVDKS  301 (414)
Q Consensus       262 l~~dp~~~ka~~r~g~a~~~----l~~~~eA~~~~~~al~l~P~  301 (414)
                      ...  .++.+.+.+|..+..    ..+.+.|...|+.+.+..+.
T Consensus        65 ~~~--~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~  106 (265)
T d1ouva_          65 CDL--NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA  106 (265)
T ss_dssp             HHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             ccc--cccchhhccccccccccccchhhHHHHHHHhhhhhhhhh
Confidence            765  578999999988876    46889999999999987654

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.26  E-value=0.0021  Score=50.40  Aligned_cols=82  Identities=12%  Similarity=0.028  Sum_probs=60.1

Q ss_pred             ccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 015006          200 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK----LGECRKSIEACNKVLDANPAHVKGLYRR  275 (414)
Q Consensus       200 g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~k----l~~~~~A~~~~~~al~~dp~~~ka~~r~  275 (414)
                      .++++|+..|.++.+    .  .+           ..+++++|.+|..    ..++.+|+.++.++.+.  .++.|.+++
T Consensus        37 ~~~~~a~~~~~~aa~----~--g~-----------~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~L   97 (133)
T d1klxa_          37 INKQKLFQYLSKACE----L--NS-----------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLIL   97 (133)
T ss_dssp             SCHHHHHHHHHHHHH----T--TC-----------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             cCHHHHHHHHhhhhc----c--cc-----------hhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHH
Confidence            456677777776665    1  11           4567788888876    46788888888888765  578888888


Q ss_pred             HHHHHH----cCCHHHHHHHHHHHHhhCC
Q 015006          276 GMAYMA----LGEFEEAQRDFEMMMKVDK  300 (414)
Q Consensus       276 g~a~~~----l~~~~eA~~~~~~al~l~P  300 (414)
                      |.+|..    ..++.+|+..|++|.++..
T Consensus        98 g~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          98 GYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            888877    4678888888888887753

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=96.93  E-value=0.0018  Score=56.70  Aligned_cols=74  Identities=14%  Similarity=0.146  Sum_probs=61.7

Q ss_pred             hHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHH
Q 015006          235 NLLHLNVAACLLK----LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKVDKSSEPDA  306 (414)
Q Consensus       235 ~~~~~N~a~~~~k----l~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~----l~~~~eA~~~~~~al~l~P~n~~~~  306 (414)
                      ..+++|+|.+|..    .+++..|+.++.++.+.  .++.|+|++|.+|..    ..++++|+.+|++|..+.+.   .+
T Consensus       178 ~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~---~A  252 (265)
T d1ouva_         178 SPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK---GA  252 (265)
T ss_dssp             HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH---HH
T ss_pred             cccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH---HH
Confidence            5688999999998    67999999999999887  579999999999986    45899999999999999754   35


Q ss_pred             HHHHHHH
Q 015006          307 TAALSKL  313 (414)
Q Consensus       307 ~~~l~~~  313 (414)
                      ...|..+
T Consensus       253 ~~~l~~l  259 (265)
T d1ouva_         253 CDILKQL  259 (265)
T ss_dssp             HHHHHTC
T ss_pred             HHHHHHH
Confidence            5555544

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.60  E-value=0.012  Score=45.83  Aligned_cols=91  Identities=14%  Similarity=0.103  Sum_probs=70.6

Q ss_pred             ccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 015006          200 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAY  279 (414)
Q Consensus       200 g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~  279 (414)
                      .++.+|+..|++|.+    ..  +           ..++.+++.  ....++++|+..+.++.+.  .++.|++++|..|
T Consensus         7 kd~~~A~~~~~kaa~----~g--~-----------~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y   65 (133)
T d1klxa_           7 KDLKKAIQYYVKACE----LN--E-----------MFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFY   65 (133)
T ss_dssp             HHHHHHHHHHHHHHH----TT--C-----------TTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHH----CC--C-----------hhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhh
Confidence            589999999999987    22  1           234555653  4467899999999999875  6899999999999


Q ss_pred             HH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006          280 MA----LGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  314 (414)
Q Consensus       280 ~~----l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~  314 (414)
                      ..    ..++++|+..|+++.+...   +.+...|..+.
T Consensus        66 ~~g~~~~~d~~~A~~~~~~aa~~g~---~~a~~~Lg~~y  101 (133)
T d1klxa_          66 ENGKYVKKDLRKAAQYYSKACGLND---QDGCLILGYKQ  101 (133)
T ss_dssp             HHCSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHH
T ss_pred             hhccccchhhHHHHHHHhhhhccCc---chHHHHHHHHH
Confidence            87    5679999999999998753   44666666554

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

Probab=94.88  E-value=0.0049  Score=44.45  Aligned_cols=40  Identities=23%  Similarity=0.155  Sum_probs=33.9

Q ss_pred             ccccCCcCcEEEEEEcCCCcCCCCCCCCCCCCCeeeEEEEeeEE
Q 015006            2 GIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHL   45 (414)
Q Consensus         2 ~~~~m~~Ge~~~~~i~~~~~~g~~~~~~ip~~~~l~~~vel~~~   45 (414)
                      +|.+|++||+..|.|++...|+...    .+|.++.|+|+|.+.
T Consensus        45 ~l~g~~~Ge~~~~~i~~p~~y~~~~----laGk~~~f~V~v~~V   84 (85)
T d1hxva_          45 GLIAMKVNQKKTLALTFPSDYHVKE----LQSKPVTFEVVLKAI   84 (85)
T ss_dssp             HHHTSCSSEEEEECCCCCTTSSSSG----GGSCCCEEEEEECCB
T ss_pred             HhccCcCCCeEEEEEEChhhcCccc----CCCCcEEEEEEEEEe
Confidence            5789999999999999998888632    467899999999764

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

Probab=90.43  E-value=0.045  Score=43.69  Aligned_cols=25  Identities=4%  Similarity=0.020  Sum_probs=22.7

Q ss_pred             ccccCCcCcEEEEEEcCCCcCCCCC
Q 015006            2 GIGTMTREEKAVIYVTSQYLTPSPL   26 (414)
Q Consensus         2 ~~~~m~~Ge~~~~~i~~~~~~g~~~   26 (414)
                      ||.+|++||+..|.|+|+.|||...
T Consensus        61 al~gm~~Ge~~~v~i~p~~ayG~~d   85 (151)
T d1ix5a_          61 AVLDMEVGDEKTVKIPAEKAYGNRN   85 (151)
T ss_dssp             HHHTCCTTCCCEEEECTTTSSCSCC
T ss_pred             HHHhhcCCceeEEEeCHHHhccccc
Confidence            6789999999999999999999743

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.04  E-value=0.19  Score=36.34  Aligned_cols=39  Identities=15%  Similarity=0.117  Sum_probs=34.0

Q ss_pred             hhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhccc
Q 015006          180 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  218 (414)
Q Consensus       180 ~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~  218 (414)
                      +..+..|..+..++..+-+.|+|.+|+.+|..|+.+|..
T Consensus         9 ~~~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~   47 (93)
T d1wfda_           9 DSDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQ   47 (93)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            345678899999999999999999999999999997654

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.53  E-value=0.33  Score=33.57  Aligned_cols=35  Identities=23%  Similarity=0.283  Sum_probs=30.8

Q ss_pred             hHHHHHHHhhhccccccccHHHHHHHHHHHHhhcc
Q 015006          183 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFN  217 (414)
Q Consensus       183 ~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~  217 (414)
                      +..|..+-.++..+.+.|.|++||.++.+|..++.
T Consensus         5 LN~AH~~~RrAer~l~~~rydeAIech~kA~~yl~   39 (83)
T d2crba1           5 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLS   39 (83)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            56788888889999999999999999999998764

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.57  E-value=0.25  Score=34.18  Aligned_cols=39  Identities=21%  Similarity=0.276  Sum_probs=33.8

Q ss_pred             hhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhccc
Q 015006          180 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  218 (414)
Q Consensus       180 ~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~  218 (414)
                      ...++.|..+..+|..+=+.|+|..|+.+|..|+.+|..
T Consensus         5 ~~~l~~A~~l~~~Av~~D~~~~y~~A~~~Y~~a~~~l~~   43 (77)
T d1wr0a1           5 SPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLH   43 (77)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            455778899999999999999999999999999997643

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.61  E-value=6.6  Score=26.79  Aligned_cols=28  Identities=25%  Similarity=0.255  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015006          269 VKGLYRRGMAYMALGEFEEAQRDFEMMM  296 (414)
Q Consensus       269 ~ka~~r~g~a~~~l~~~~eA~~~~~~al  296 (414)
                      +..+-|+|..++..|+|++|+++.++|.
T Consensus         8 AH~~~RrAer~l~~~rydeAIech~kA~   35 (83)
T d2crba1           8 AHQQSRRADRLLAAGKYEEAISCHRKAT   35 (83)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3455677788888888888777665554