Citrus Sinensis ID: 015021

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410----
Protein Sequence
MSKRTHTTEVGSIACTDLSDLGAGKEGWLVNDPNLLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGVLARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDLENSYERLPHQLWNVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVGAILSKVVPATFSTISSLSKMIWRSEQSPKKSEPKPQSFARASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEHLAGMADENWTTSLNYSVRQR
Secondary Structure (PSIPRED)
cccccccEEEEEEEcccccccccccccccccccEEEEcccccHHHHEEccEEEEEEEcccccccEEEEEEcccccccEEEEEEEEEEcccEEEEEEccccEEEEEEcccccHHHHHcccccEEEEEEEcccccccccccccEEEEEEccEEEEEEccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEEEEccccccHHHHcccccccEEEEEccccEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEEEEcccccEEEEEccccEEEEEEccccEEEEEcccccccEEEEEEEEEccccccccccccccccccEEEEEEEccccccHHHHHccccccEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEEHHHHHHHcccccccccccHHHHHHHcHHHHHHHccEEEEEEEcccccccEEEEEEEccccccccEEEEEEEcccccEEEEEEccccEEEEEEccHHHHHHHHcccccEEEEEEEcccccccccccccEEEEEEccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEccccccEEEEEEEccccccHHHHHHccccEEEEEEccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEccccccccEEEEEcccccEEEEEccccEEEEEEHHHcEEEEEEccccccEEEEEEEcccccccccccccccccccEEEEEEEEcccccHHHHHHHHHccccccEEccccccc
Coil and Loop (DISEMBL)
mskrthttevgsiactdlsdlgagkegwlvndpnllcALDMHTIALANRYQTVIINwadpeglvakirpelspiaSEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLvhrqlihpgrilklrvrgsrrdltqdtaeeevCVVMpgvlarfdgSEIQKMLQRWFqdsnsnfwdqkpkqrdsedLENSYerlphqlwnvskygpcadaaitglmppplmevqssqRYFCAVTIGEDSVISAFRLSEDRSRSLVGAILSKVVPATFSTISSLSKMIWrseqspkksepkpqsfaraspltclkdhprkgerltlspsgslAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKdaatssayyapvksdyclclaihapRKGIIEHLAgmadenwttslnysvrqr
Flexible Loop (DISEMBL)
mskrthttevgsiactdlsdlgaGKEGWLVNDPNLLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLvhrqlihpgrilklrvrgsrrdltqdtaeeevcvvMPGVLARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDLENSYERLPHQLWNVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVGAilskvvpatfstiSSLSKMIWRSEqspkksepkpqsfaraspltclkdhprkgerltlspsgsLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEHLAgmadenwttslnysvrqr
Low Complexity Region (SEG)
MSKRTHTTEVGSIACTDLSDLGAGKEGWLVNDPNLLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGVLARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDLENSYERLPHQLWNVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVGAILSKVVPATFSTISSLSKMIWRSEQSPKKSEPKPQSFARASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEHLAGMADENWTTSLNYSVRQR
Disordered region (IsUnstruct)
**********GSIACTDLSDLGAGKEGWLVNDPNLLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGVLARFDGSEIQKMLQRWFQD************************LPHQLWNVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVGAILSKVVPATFSTISSLSKMIW******************************************LAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEHLAGMADENWTTSLN******
Disordered Region (DISOPRED)
*********VGSIACTDLSDLGAGKEGWLVNDPNLLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRV*************EEVCVVMPGVLARFDGSEIQKMLQRWFQDSNSN*******************RLPHQLWNVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVGAILSKVVPATFSTISSLS**************************TCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFME*********************CLCLAIHAPRKGIIEHLAGMADENWTTSLNYS****
Disordered Region (DISEMBL)
**********GSIACTDLSDLGAGKEGWLVNDPNLLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGVLARFDGSEIQKMLQRWFQDSNSNFWD*************SYERLPHQLWNVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVGAILSKVVPATFSTISSLSKMI*******************ASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEHLAGMADENWTTSLNYSVRQR
Disordered Region (DISPRO)
****THTTEVGSIACTDLSDLGAGKEGWLVNDPNLLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGVLARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDLENSYERLPHQLWNVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVGAILSKVVPATFSTISSLSKMIWRS*************FARASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVN************VKSDYCLCLAIHAPRKGIIEHLAGMAD**************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSKRTHTTEVGSIACTDLSDLGAGKEGWLVNDPNLLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGVLARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDLENSYERLPHQLWNVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVGAILSKVVPATFSTISSLSKMIWRSEQSPKKSEPKPQSFARASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEHLAGMADENWTTSLNYSVRQR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	414	2.2.26 [Sep-21-2011]
Q9H2M9	1393	Rab3 GTPase-activating pr	yes	no	0.695	0.206	0.269	7e-19
Q5U1Z0	1386	Rab3 GTPase-activating pr	yes	no	0.693	0.207	0.272	1e-18
Q8BMG7	1366	Rab3 GTPase-activating pr	yes	no	0.700	0.212	0.259	4e-18
Q9VKB9	1341	Rab3 GTPase-activating pr	yes	no	0.753	0.232	0.239	4e-12

>sp|Q9H2M9|RBGPR_HUMAN Rab3 GTPase-activating protein non-catalytic subunit OS=Homo sapiens GN=RAB3GAP2 PE=1 SV=1

 Score = 95.5 bits (236), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 149/334 (44%), Gaps = 46/334 (13%)

Query: 93  LAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSR--RDLTQDTAEEEVCVVMPGV 150
           + VG + GY   Y   G L+  QL++   +L+L+ R     R        EE+ ++ P  
Sbjct: 156 IVVGFTSGYVRFYTENGVLLLAQLLNEDPVLQLKCRTYEIPRHPGVTEQNEELSILYPAA 215

Query: 151 LARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDLENSYERLPHQLWNVSKYGPCADA 210
           +   DG  + + L+           +Q  K   S +       L ++ W +       D 
Sbjct: 216 IVTIDGFSLFQSLRA--------CRNQVAKAAASGNENIQPPPLAYKKWGLQDIDTIIDH 267

Query: 211 AITGLM---PPPLMEVQSSQRYFCA------------VTIGEDSVISAFRLSEDRSRSLV 255
           A  G+M   P   M+  S+   F A            +T+G +     F   E  ++ L+
Sbjct: 268 ASVGIMTLSPFDQMKTASNIGGFNAAIKNSPPAMSQYITVGSNPFTGFFYALEGSTQPLL 327

Query: 256 G----AILSKVVPATFSTISSLSKMIWRS---EQSPKKSEPKPQSFARASPLTC---LKD 305
                A+ SK+  A F+  S    + W+S   E++ +K +PK +    A+PL     L D
Sbjct: 328 SHVALAVASKLTSALFNAASGW--LGWKSKHEEEAVQKQKPKVEP---ATPLAVRFGLPD 382

Query: 306 HPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVN-KDA 364
             R GE + LSP  +LAA+TD  GR++LLD    + +R+WKGYRDA   +++ + +  + 
Sbjct: 383 SRRHGESICLSPCNTLAAVTDDFGRVILLDVARGIAIRMWKGYRDAQIGWIQTVEDLHER 442

Query: 365 ATSSAYYAPVK-----SDYCLCLAIHAPRKGIIE 393
               A ++P       S     L I+APR+GI+E
Sbjct: 443 VPEKADFSPFGNSQGPSRVAQFLVIYAPRRGILE 476

Regulatory subunit of a GTPase activating protein that has specificity for Rab3 subfamily (RAB3A, RAB3B, RAB3C and RAB3D). Rab3 proteins are involved in regulated exocytosis of neurotransmitters and hormones. Rab3 GTPase-activating complex specifically converts active Rab3-GTP to the inactive form Rab3-GDP. Required for normal eye and brain development. May participate in neurodevelopmental processes such as proliferation, migration and differentiation before synapse formation, and non-synaptic vesicular release of neurotransmitters.
Homo sapiens (taxid: 9606)

>sp|Q5U1Z0|RBGPR_RAT Rab3 GTPase-activating protein non-catalytic subunit OS=Rattus norvegicus GN=Rab3gap2 PE=1 SV=2

 Score = 94.4 bits (233), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 150/334 (44%), Gaps = 47/334 (14%)

Query: 93  LAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSR--RDLTQDTAEEEVCVVMPGV 150
           + VG + GY   Y  +G L+  QL++  R+L+L+ R     R        EE+ ++ P  
Sbjct: 155 IVVGFTSGYVRFYT-EGVLLLAQLLNEDRVLQLKCRTYEIPRHPGVTEQNEELSILYPAA 213

Query: 151 LARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDLENSYERLPHQLWNVSKYGPCADA 210
           +   DG  + + L+           +Q  K   S +       L ++ W +       D 
Sbjct: 214 IVTIDGFSLFQSLRA--------CRNQVAKAAASGNENIQPPPLAYKKWGLQDIDTIIDH 265

Query: 211 AITGLM---PPPLMEVQSSQRYFCA------------VTIGEDSVISAFRLSEDRSRSLV 255
           A  G+M   P   M+  S+   F A            +T+G       F   E  ++ L+
Sbjct: 266 ASIGIMTLSPFDQMKTASNIGGFNAAIKNSPPAMSQYITVGSSPFTGFFYALEGSTQPLL 325

Query: 256 G----AILSKVVPATFSTISSLSKMIWRS---EQSPKKSEPKPQSFARASPLTC---LKD 305
                A+ SK+  A FS  S    + W+S   E++ +K +PK +    A+PL     L D
Sbjct: 326 SHVALAVASKLTSALFSAASGW--LGWKSKHEEETVQKQKPKMEP---ATPLAVRFGLPD 380

Query: 306 HPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVN-KDA 364
             R GE + LSP  +LAA+TD  GR++LLD    + +R+WKGYRDA   +++++ +  + 
Sbjct: 381 SRRHGESICLSPCNTLAAVTDDFGRVILLDVARGIAIRMWKGYRDAQIGWIQIVEDLHER 440

Query: 365 ATSSAYYAPV-----KSDYCLCLAIHAPRKGIIE 393
                 ++P       S     L I+APR+GI+E
Sbjct: 441 VPEKGDFSPFGNTQGPSRVAQFLVIYAPRRGILE 474

Regulatory subunit of a GTPase activating protein that has specificity for Rab3 subfamily (RAB3A, RAB3B, RAB3C and RAB3D). Rab3 proteins are involved in regulated exocytosis of neurotransmitters and hormones. Rab3 GTPase-activating complex specifically converts active Rab3-GTP to the inactive form Rab3-GDP. Required for normal eye and brain development. May participate in neurodevelopmental processes such as proliferation, migration and differentiation before synapse formation, and non-synaptic vesicular release of neurotransmitters.

Rattus norvegicus (taxid: 10116)

>sp|Q8BMG7|RBGPR_MOUSE Rab3 GTPase-activating protein non-catalytic subunit OS=Mus musculus GN=Rab3gap2 PE=1 SV=2

 Score = 92.8 bits (229), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 144/331 (43%), Gaps = 41/331 (12%)

Query: 93  LAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSR--RDLTQDTAEEEVCVVMPGV 150
           + VG + GY   Y  +G L+  QL++  ++L+L+ R     R        EE+ ++ P  
Sbjct: 155 IVVGFTSGYVRFYT-EGVLLLAQLLNEDKVLQLKCRTYEIPRHPGVTEQNEELSILYPAA 213

Query: 151 LARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDLENSYERLPHQLWNVSKYGPCADA 210
           +   DG  + + L+           +Q  K   S +       L ++ W +       D 
Sbjct: 214 IVTIDGFSLFQSLRACR--------NQVAKAAASGNENIQPPPLAYKKWGLQDIDTIIDH 265

Query: 211 AITGLM---PPPLMEVQSSQRYFCA------------VTIGEDSVISAFRLSEDRSRSLV 255
           A  G+M   P   M+  S+   F A            +T+G       F   E  ++ L+
Sbjct: 266 ASVGIMTLSPFDQMKTASNIGGFNAAIKNSPPAMSQYITVGSSPFTGFFYALEGSTQPLL 325

Query: 256 G----AILSKVVPATFSTISSLSKMIWRSEQSPKKSEPKPQSFARASPLTC---LKDHPR 308
                A+ SK+  A FS  S    + W+S+      + +      A+PL     L D  R
Sbjct: 326 SHVALAVASKLTSALFSAASGW--LGWKSKHEEDTVQKQKPKMEPATPLAVRFGLPDSRR 383

Query: 309 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVN-KDAATS 367
            GE + LSP  +LAA+TD  GR++LLD    + +R+WKGYRDA   +++++ +  +    
Sbjct: 384 HGESICLSPCNTLAAVTDDFGRVILLDVARGIAIRMWKGYRDAQVGWIQIVEDLHERVPE 443

Query: 368 SAYYAPV-----KSDYCLCLAIHAPRKGIIE 393
              ++P       S     L I+APR+GI+E
Sbjct: 444 KGGFSPFGNTQGPSRVAQFLVIYAPRRGILE 474

Regulatory subunit of a GTPase activating protein that has specificity for Rab3 subfamily (RAB3A, RAB3B, RAB3C and RAB3D). Rab3 proteins are involved in regulated exocytosis of neurotransmitters and hormones. Rab3 GTPase-activating complex specifically converts active Rab3-GTP to the inactive form Rab3-GDP. Required for normal eye and brain development. May participate in neurodevelopmental processes such as proliferation, migration and differentiation before synapse formation, and non-synaptic vesicular release of neurotransmitters.

Mus musculus (taxid: 10090)

>sp|Q9VKB9|RBGPR_DROME Rab3 GTPase-activating protein regulatory subunit OS=Drosophila melanogaster GN=rab3-GAP PE=1 SV=2

 Score = 73.2 bits (178), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 89/372 (23%), Positives = 151/372 (40%), Gaps = 60/372 (16%)

Query: 52  TVIINWA----DPEGLVAKIRPELSPIASEYIT--AIEWLVFEEMRALAVGTSRGYFLVY 105
           T ++ W     DP  +V  +     P+     T  AIEW        +AVG   G    Y
Sbjct: 67  TYVLGWCGELEDPNQIVTSLT--CLPMTQNKSTDGAIEW------TCVAVGLCSGMVTFY 118

Query: 106 DLKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGVLARFDGSEIQKMLQR 165
              G  +  Q      ++ ++++ + R      A+  + ++ P  L    G +I   L  
Sbjct: 119 TDSGVKLFSQCCQEDPVIGVKLQSAPR---HSEADSLLYIIYPRCLCFIQGQDILPTLNN 175

Query: 166 WFQDSNSNFWDQKPKQRDSEDLENSY---ERLPHQLWNV--SKYGPCADAAITGLMPPPL 220
              +           QR + +  +SY   + +P Q +     +     DAAI+    PP 
Sbjct: 176 CRHNV----------QRGALE-RSSYPTADVVPFQKYKFKQEREAVINDAAISTTQRPPT 224

Query: 221 MEVQSSQR----YFCAV-----------TIGEDSVISAFRLSEDRSRSLVGAILSKVVPA 265
            +    Q     YF  V             G +  +  F+  E      +G +   V+  
Sbjct: 225 YDYIVQQTIGLGYFAKVHATPPRSSQVLAAGAEPYLGFFQAEEGYKTMSLGEVAKDVIGI 284

Query: 266 TFSTISSLSKMIWRSEQ---SPKKSE-PKPQSFARASPLTCLKDHPRKGERLTLSPSGSL 321
            +  +  L  +  R+ +   SP++S  P P   A       L D  R G  L+++P G L
Sbjct: 285 AYKNL--LGGIFRRAPEPLPSPEESPLPVPTKEAPMRIRCRLYDGKRDGLTLSVAPGGRL 342

Query: 322 AAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLC 381
           A +TD+L R++L+DT   +++R+WKGYRDA C F+ +   K+ +         K+   L 
Sbjct: 343 AVVTDNLDRVMLVDTHQAIILRVWKGYRDAQCAFVPV---KEKSVRGIKTHKRKA---LF 396

Query: 382 LAIHAPRKGIIE 393
           L I+APR G ++
Sbjct: 397 LVIYAPRMGCLD 408

Probable regulatory subunit of a GTPase activating protein that has specificity for Rab3 subfamily. Rab3 proteins are involved in regulated exocytosis of neurotransmitters and hormones. Rab3 GTPase-activating complex specifically converts active Rab3-GTP to the inactive form Rab3-GDP.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	414
225461677	457	PREDICTED: rab3 GTPase-activating protei	0.949	0.859	0.756	0.0
255567076	484	rab3 gtpase-activating protein non-catal	0.939	0.803	0.746	1e-173
297830038	455	hypothetical protein ARALYDRAFT_478912 [	0.949	0.863	0.711	1e-170
449456579	456	PREDICTED: rab3 GTPase-activating protei	0.949	0.861	0.711	1e-169
15231948	455	uncharacterized protein [Arabidopsis tha	0.949	0.863	0.706	1e-169
449516756	456	PREDICTED: rab3 GTPase-activating protei	0.949	0.861	0.708	1e-168
356514563	460	PREDICTED: rab3 GTPase-activating protei	0.949	0.854	0.685	1e-160
356543215	459	PREDICTED: rab3 GTPase-activating protei	0.944	0.851	0.685	1e-157
224116998	354	predicted protein [Populus trichocarpa]	0.702	0.822	0.749	1e-128
115478506	469	Os09g0315800 [Oryza sativa Japonica Grou	0.942	0.831	0.567	1e-121

>gi|225461677|ref|XP_002285458.1| PREDICTED: rab3 GTPase-activating protein non-catalytic subunit [Vitis vinifera] gi|302142895|emb|CBI20190.3| unnamed protein product [Vitis vinifera]

 Score =  639 bits (1647), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 301/398 (75%), Positives = 353/398 (88%), Gaps = 5/398 (1%)

Query: 1   MSKRTHTTEVGSIACTDLSDLGAGKEGWLVNDPNLLCALDMHTIALANRYQTVIINWA-- 58
           M++R +TTE+G IAC +LS+LGAGKE WLV +P+L+CALD  ++ALANR   +++ W+  
Sbjct: 1   MARRVYTTELGCIACNELSELGAGKEAWLVENPSLICALDTDSLALANRSFVLVLGWSEN 60

Query: 59  -DPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVHRQLI 117
            DP     KIRP LS I +E ITA+EWLVF+E+R LAVGTS GY ++Y L  DL+H+Q+I
Sbjct: 61  GDPYNSPVKIRPTLSQIETERITAVEWLVFDEIRVLAVGTSSGYLMIYSLGADLIHKQMI 120

Query: 118 HPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGVLARFDGSEIQKMLQRWFQDSNSNFWDQ 177
           +PGRILK RVRG++RDLTQ ++ EEVCVVMPGV+ARFDG+++Q MLQRWFQD++S FWD+
Sbjct: 121 NPGRILKFRVRGTKRDLTQGSSSEEVCVVMPGVIARFDGADLQSMLQRWFQDTHSQFWDE 180

Query: 178 KPKQRDSEDLENSYERLPHQLWNVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGE 237
           KPK+RD ED E SY RLP+QLWNVSKYGPCADAAITG MPPPLME+QSSQRY+CAVTIG+
Sbjct: 181 KPKRRDQEDSEKSYGRLPYQLWNVSKYGPCADAAITGTMPPPLMELQSSQRYYCAVTIGD 240

Query: 238 DSVISAFRLSEDRSRSLVGAILSKVVPATFSTISSLSKMIWRSEQ-SPKKSEPKPQSFAR 296
           D+VISAFRLSEDR+RSLVGAILSKVVPATFSTI+S SKMIWRSEQ SPK+SEPKPQ FAR
Sbjct: 241 DAVISAFRLSEDRNRSLVGAILSKVVPATFSTIASFSKMIWRSEQKSPKRSEPKPQPFAR 300

Query: 297 ASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFM 356
           ASPLTCLKDHPRKGE+LTLSPSG+LAAITDSLGRILLLDTQALVVVRLWKGYRDASC+F 
Sbjct: 301 ASPLTCLKDHPRKGEKLTLSPSGTLAAITDSLGRILLLDTQALVVVRLWKGYRDASCLFT 360

Query: 357 EMLVNKD-AATSSAYYAPVKSDYCLCLAIHAPRKGIIE 393
           EMLV+KD AA+SS+YY PVKSDYCLCLAIHAPRKGI+E
Sbjct: 361 EMLVSKDTAASSSSYYEPVKSDYCLCLAIHAPRKGIVE 398

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567076|ref|XP_002524520.1| rab3 gtpase-activating protein non-catalytic subunit, putative [Ricinus communis] gi|223536194|gb|EEF37847.1| rab3 gtpase-activating protein non-catalytic subunit, putative [Ricinus communis]

 Score =  614 bits (1583), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 295/395 (74%), Positives = 348/395 (88%), Gaps = 6/395 (1%)

Query: 2   SKRTHTTEVGSIACTDLSDLGAGKEGWLVNDPNLLCALDMHTIALANRYQTVIINWADPE 61
           SKR+HTTE+G IAC +LSD+GAGKEGWLV++PNL CALD H+IA++NRY  +I  W D  
Sbjct: 3   SKRSHTTELGCIACEELSDVGAGKEGWLVDNPNLKCALDTHSIAISNRYLILITGWDD-- 60

Query: 62  GLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVHRQLIHPGR 121
           G   KIRP+LSPI SE ITA+EWLVF+E+R +AVGTS GYFLVY L G L+H+Q+++PGR
Sbjct: 61  GPRLKIRPDLSPIESESITALEWLVFDEIRVVAVGTSCGYFLVYSLDGHLIHKQMVYPGR 120

Query: 122 ILKLRVRGSRRDLTQDTAE-EEVCVVMPGVLARFDGSEIQKMLQRWFQDSNSNFWDQKPK 180
           ILK+RVRG+++DLTQ T+  EE+ +VMPGV+ARFDGS++Q MLQ W Q+ +S FWD+KP 
Sbjct: 121 ILKIRVRGTKKDLTQQTSSSEEISIVMPGVIARFDGSDLQNMLQEWIQEKHSQFWDEKP- 179

Query: 181 QRDSEDLENSYERLPHQLWNVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSV 240
            RD++ L  +Y+RLP+QLWNV+KYG CADAAITG+MPPPLMEVQSSQRY+CAVTIG+D+V
Sbjct: 180 NRDADGLGITYKRLPYQLWNVNKYGSCADAAITGVMPPPLMEVQSSQRYYCAVTIGDDAV 239

Query: 241 ISAFRLSEDRSRSLVGAILSKVVPATFSTISSLSKMIWRSEQ-SPKKSEPKPQSFARASP 299
           ISA+RLSEDRS+SLVGAILSKVVPATFSTI+SLSKMIWRSE+ SPKKSE KPQSFA+ASP
Sbjct: 240 ISAYRLSEDRSKSLVGAILSKVVPATFSTIASLSKMIWRSEKASPKKSEAKPQSFAKASP 299

Query: 300 LTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEML 359
           LTCLKDHPRKGE+LTLSP G+LAAITDSLGRILLLDTQAL+VVRLWKGYRDASC FMEM 
Sbjct: 300 LTCLKDHPRKGEKLTLSPGGTLAAITDSLGRILLLDTQALIVVRLWKGYRDASCFFMEMQ 359

Query: 360 VNKD-AATSSAYYAPVKSDYCLCLAIHAPRKGIIE 393
           V +D A  SS+YY P KSDYCLCLAIHAPRKGIIE
Sbjct: 360 VKRDNAGASSSYYEPSKSDYCLCLAIHAPRKGIIE 394

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830038|ref|XP_002882901.1| hypothetical protein ARALYDRAFT_478912 [Arabidopsis lyrata subsp. lyrata] gi|297328741|gb|EFH59160.1| hypothetical protein ARALYDRAFT_478912 [Arabidopsis lyrata subsp. lyrata]

 Score =  603 bits (1555), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 281/395 (71%), Positives = 338/395 (85%), Gaps = 2/395 (0%)

Query: 1   MSKRTHTTEVGSIACTDLSDLGAGKEGWLVNDPNLLCALDMHTIALANRYQTVIINWADP 60
           M+KR H TE+G IAC +LS+LGAGKEGWLVN+PNLL ALD H++ALANR+  +I+NW DP
Sbjct: 1   MAKRIHLTELGCIACEELSELGAGKEGWLVNNPNLLSALDSHSLALANRFLILIVNWGDP 60

Query: 61  EGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVHRQLIHPG 120
           +    KIRP+LSPI +E ITAIEWLVF+++R +  GTS GY LVY + GDL+H+Q++HP 
Sbjct: 61  DAPRLKIRPDLSPIEAESITAIEWLVFDDVRVVVAGTSCGYLLVYSVAGDLIHKQMVHPS 120

Query: 121 RILKLRVRGSRRDLTQDTAEEEVCVVMPGVLARFDGSEIQKMLQRWFQDSNSNFWDQKPK 180
           RILK+RVRG+++DL Q+T+ EE+C+V+PG++ARFDGS IQ MLQ+WFQ+ NSNFWDQK +
Sbjct: 121 RILKIRVRGTKKDLMQETSSEEICIVLPGIIARFDGSNIQSMLQKWFQEKNSNFWDQKNR 180

Query: 181 QRDSEDLENSYERLPHQLWNVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSV 240
           + D ED  + Y+RLP+Q+WNV+K G C DA +TG+MPPPL+E+QSSQRY+CAVTIGED+V
Sbjct: 181 KGDVEDSGSLYQRLPYQIWNVNKNGVCVDATVTGVMPPPLLELQSSQRYYCAVTIGEDAV 240

Query: 241 ISAFRLSEDRSRSLVGAILSKVVPATFSTISSLSKMIWRS-EQSPK-KSEPKPQSFARAS 298
           ISA+RLSEDR RSLVGAILSKVVPA  STI+S SK+IWRS +QSPK K E K QSFARAS
Sbjct: 241 ISAYRLSEDRGRSLVGAILSKVVPAAASTIASFSKLIWRSNDQSPKRKPEAKTQSFARAS 300

Query: 299 PLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEM 358
            LTC+KD+PRKGE+LTLSPSG+LAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEM
Sbjct: 301 SLTCIKDYPRKGEKLTLSPSGTLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEM 360

Query: 359 LVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIE 393
           L  KD   S  +  PVKSDYCLCLAIHAPRKGIIE
Sbjct: 361 LAKKDKGKSVIHTEPVKSDYCLCLAIHAPRKGIIE 395

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456579|ref|XP_004146026.1| PREDICTED: rab3 GTPase-activating protein non-catalytic subunit-like [Cucumis sativus]

 Score =  600 bits (1546), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 283/398 (71%), Positives = 343/398 (86%), Gaps = 5/398 (1%)

Query: 1   MSKRTHTTEVGSIACTDLSDLGAGKEGWLVNDPNLLCALDMHTIALANRYQTVIINWADP 60
           M++RT TTE+G IAC DL+D GAGKEGWLV+ PNLLCALD H++ALANR   +++ W+  
Sbjct: 1   MARRTFTTELGCIACEDLADFGAGKEGWLVDSPNLLCALDSHSLALANRSIILVLGWSGS 60

Query: 61  EGLVAKIRP-ELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVHRQLIHP 119
           +G   KIRP +LSPI +EYI+A+EWLV +E++ + VGTS GYFL+Y L+GDL+ +Q+IHP
Sbjct: 61  DGYPLKIRPSDLSPIEAEYISALEWLVLDEIKVILVGTSCGYFLIYSLRGDLILKQMIHP 120

Query: 120 GRILKLRVRGSRRDLTQDTAEEEVCVVMPGVLARFDGSEIQKMLQRWFQDSNSNFWDQKP 179
           GRILK+RV GS+RDL+  ++ EEV + MPGV+AR +GS+IQ  LQ+WFQ+S+S FWD K 
Sbjct: 121 GRILKIRVHGSKRDLSHGSSLEEVSIAMPGVIARIEGSDIQNTLQKWFQESSSQFWDPKS 180

Query: 180 KQRDSEDLENSYERLPHQLWNVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDS 239
            QRD  D ENS E+L +Q+WNVSKYG CADAAITG+MPPPLME+QSS+RYFCAVT+GED+
Sbjct: 181 HQRDMNDSENSVEKLAYQVWNVSKYGACADAAITGVMPPPLMELQSSERYFCAVTVGEDA 240

Query: 240 VISAFRLSEDRSRSLVGAILSKVVPATFSTISSLSKMIWRSE-QSPKKSEPKPQSFARAS 298
           VISAFRLSED+SRSLVGAILSKVVPATFSTI+S SKMIWRSE ++ KK + K Q+FARAS
Sbjct: 241 VISAFRLSEDKSRSLVGAILSKVVPATFSTIASFSKMIWRSEPKTSKKPDAKGQAFARAS 300

Query: 299 PLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEM 358
           PLTCLKDHPRKGE+LTLSPSG+LAAITDSLGRILLLDTQALVVVRLWKGYRDA+C+FMEM
Sbjct: 301 PLTCLKDHPRKGEKLTLSPSGTLAAITDSLGRILLLDTQALVVVRLWKGYRDANCLFMEM 360

Query: 359 LVNKDAATSSAY---YAPVKSDYCLCLAIHAPRKGIIE 393
           LVN+D A+SS+    Y P K+DYCLCLAIHAPRKGI+E
Sbjct: 361 LVNRDTASSSSNSMDYEPAKNDYCLCLAIHAPRKGIVE 398

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231948|ref|NP_188109.1| uncharacterized protein [Arabidopsis thaliana] gi|8777474|dbj|BAA97054.1| unnamed protein product [Arabidopsis thaliana] gi|63147384|gb|AAY34165.1| At3g14910 [Arabidopsis thaliana] gi|115646783|gb|ABJ17116.1| At3g14910 [Arabidopsis thaliana] gi|332642066|gb|AEE75587.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  600 bits (1546), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 279/395 (70%), Positives = 337/395 (85%), Gaps = 2/395 (0%)

Query: 1   MSKRTHTTEVGSIACTDLSDLGAGKEGWLVNDPNLLCALDMHTIALANRYQTVIINWADP 60
           M+KR H TE+G IAC +L++LGAGKEGWLVN+PNLL ALD H++ALANR+  +I+NW DP
Sbjct: 1   MAKRIHLTELGCIACEELTELGAGKEGWLVNNPNLLSALDSHSLALANRFLILIVNWGDP 60

Query: 61  EGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVHRQLIHPG 120
           +    KIRP+LSPI +E ITAIEWLVF+++R +  GTS GY LVY + GDL+H+Q++H  
Sbjct: 61  DAPRVKIRPDLSPIEAESITAIEWLVFDDVRVVVAGTSCGYLLVYSVTGDLIHKQIVHQS 120

Query: 121 RILKLRVRGSRRDLTQDTAEEEVCVVMPGVLARFDGSEIQKMLQRWFQDSNSNFWDQKPK 180
           RILK+RVRG+++DL Q+T+ EE+C+V+PGV+ARFDGS IQ M+Q+W Q+ NSNFWDQK +
Sbjct: 121 RILKIRVRGTKKDLMQETSSEEICIVLPGVIARFDGSNIQSMVQKWVQEKNSNFWDQKNR 180

Query: 181 QRDSEDLENSYERLPHQLWNVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSV 240
           + D+ED  + Y+RLP+Q+WNV+K G C DA +TG+MPPPL+E+QSSQRY+CAVTIGEDSV
Sbjct: 181 KGDAEDTGSLYQRLPYQIWNVNKNGVCVDATVTGVMPPPLLELQSSQRYYCAVTIGEDSV 240

Query: 241 ISAFRLSEDRSRSLVGAILSKVVPATFSTISSLSKMIWRS-EQSPK-KSEPKPQSFARAS 298
           ISA+RLSEDR RSLVGAILSKVVPA  STI+S SK+IWRS +QSPK K E K QSFARAS
Sbjct: 241 ISAYRLSEDRGRSLVGAILSKVVPAAASTIASFSKLIWRSNDQSPKRKPEAKTQSFARAS 300

Query: 299 PLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEM 358
            LTC+KD+PRKGE+LTLSPSG+LAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEM
Sbjct: 301 SLTCIKDYPRKGEKLTLSPSGTLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEM 360

Query: 359 LVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIE 393
           L  KD   S  +  PVKSDYCLCLAIHAPRKGIIE
Sbjct: 361 LAKKDKGKSVIHTEPVKSDYCLCLAIHAPRKGIIE 395

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449516756|ref|XP_004165412.1| PREDICTED: rab3 GTPase-activating protein non-catalytic subunit-like [Cucumis sativus]

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 282/398 (70%), Positives = 343/398 (86%), Gaps = 5/398 (1%)

Query: 1   MSKRTHTTEVGSIACTDLSDLGAGKEGWLVNDPNLLCALDMHTIALANRYQTVIINWADP 60
           M++RT TTE+G IAC DL+D GAGKEGWLV+ PNLLCALD H++ALA+R   +++ W+  
Sbjct: 1   MARRTFTTELGCIACEDLADFGAGKEGWLVDSPNLLCALDSHSLALASRSIILVLGWSGS 60

Query: 61  EGLVAKIRP-ELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVHRQLIHP 119
           +G   KIRP +LSPI +EYI+A+EWLV +E++ + VGTS GYFL+Y L+GDL+ +Q+IHP
Sbjct: 61  DGYPLKIRPSDLSPIEAEYISALEWLVLDEIKVILVGTSCGYFLIYSLRGDLILKQMIHP 120

Query: 120 GRILKLRVRGSRRDLTQDTAEEEVCVVMPGVLARFDGSEIQKMLQRWFQDSNSNFWDQKP 179
           GRILK+RV GS+RDL+  ++ EEV + MPGV+AR +GS+IQ  LQ+WFQ+S+S FWD K 
Sbjct: 121 GRILKIRVHGSKRDLSHGSSLEEVSIAMPGVIARIEGSDIQNTLQKWFQESSSQFWDPKS 180

Query: 180 KQRDSEDLENSYERLPHQLWNVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDS 239
            QRD  D ENS E+L +Q+WNVSKYG CADAAITG+MPPPLME+QSS+RYFCAVT+GED+
Sbjct: 181 HQRDMNDSENSVEKLAYQVWNVSKYGACADAAITGVMPPPLMELQSSERYFCAVTVGEDA 240

Query: 240 VISAFRLSEDRSRSLVGAILSKVVPATFSTISSLSKMIWRSE-QSPKKSEPKPQSFARAS 298
           VISAFRLSED+SRSLVGAILSKVVPATFSTI+S SKMIWRSE ++ KK + K Q+FARAS
Sbjct: 241 VISAFRLSEDKSRSLVGAILSKVVPATFSTIASFSKMIWRSEPKTSKKPDAKGQAFARAS 300

Query: 299 PLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEM 358
           PLTCLKDHPRKGE+LTLSPSG+LAAITDSLGRILLLDTQALVVVRLWKGYRDA+C+FMEM
Sbjct: 301 PLTCLKDHPRKGEKLTLSPSGTLAAITDSLGRILLLDTQALVVVRLWKGYRDANCLFMEM 360

Query: 359 LVNKDAATSSAY---YAPVKSDYCLCLAIHAPRKGIIE 393
           LVN+D A+SS+    Y P K+DYCLCLAIHAPRKGI+E
Sbjct: 361 LVNRDTASSSSNSMDYEPAKNDYCLCLAIHAPRKGIVE 398

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514563|ref|XP_003525975.1| PREDICTED: rab3 GTPase-activating protein non-catalytic subunit-like [Glycine max]

 Score =  572 bits (1473), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 274/400 (68%), Positives = 339/400 (84%), Gaps = 7/400 (1%)

Query: 1   MSKRTHTTEVGSIACTDLSDLGAGKEGWLVNDPNLLCALDMHTIALANRYQTVIINWADP 60
           MS+R++ TE+G IAC +L +LGAGK  WLV  P LLCA+D H++ LANR   ++++W+  
Sbjct: 1   MSRRSYKTELGCIACDELGELGAGKPHWLVETPQLLCAIDTHSLLLANRSTILLLSWSSD 60

Query: 61  EGLVA----KIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVHRQL 116
               A    KIRP+LSPI +E I+A+EWL F + R +  GTS GY L+Y L+G+L+HRQ+
Sbjct: 61  STAAAPPPLKIRPDLSPIDAESISALEWLAFRDHRVIVAGTSSGYLLLYSLQGELIHRQM 120

Query: 117 IHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGVLARFDGSEIQKMLQRWFQDSNSNFWD 176
           I+P R+LKLRVRG+++DL QDT+ EE C++M GV+ARFDGS+IQ MLQ+WF+++NS F D
Sbjct: 121 IYPERVLKLRVRGTKKDLIQDTSSEEFCLIMSGVIARFDGSDIQNMLQKWFEEANSRFSD 180

Query: 177 QKPKQRDSEDLENSYERLPHQLWNVSKYGPCADAAITGLMPPPLME-VQSSQRYFCAVTI 235
           Q PK +DSED EN+  ++P+QLWN+ KYG CADAAITG+MPPPLME  QS+QRY+CAV +
Sbjct: 181 QNPKSQDSEDFENTDVKIPYQLWNIGKYGTCADAAITGIMPPPLMEQQQSNQRYYCAVAV 240

Query: 236 GEDSVISAFRLSEDRSRSLVGAILSKVVPATFSTISSLSKMIWRSEQ-SPKKSEPKPQSF 294
           GED+VISA+RLSE++ RSLVGAILSKVVPATFSTISS SK+IWR+E+ SPKKS+ KP+ F
Sbjct: 241 GEDAVISAYRLSENKGRSLVGAILSKVVPATFSTISSFSKLIWRNERSSPKKSDLKPRPF 300

Query: 295 ARASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCV 354
           ARASPLTCLKDHPRKGE+LTLSPSG+LAAITDSLGRILLLDTQALVVVRLWKGYRDASC+
Sbjct: 301 ARASPLTCLKDHPRKGEKLTLSPSGTLAAITDSLGRILLLDTQALVVVRLWKGYRDASCL 360

Query: 355 FMEMLVNKD-AATSSAYYAPVKSDYCLCLAIHAPRKGIIE 393
           FMEMLVNKD A++SS+Y  P+KSDYCLCLAIHAPRKGIIE
Sbjct: 361 FMEMLVNKDIASSSSSYSEPLKSDYCLCLAIHAPRKGIIE 400

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543215|ref|XP_003540058.1| PREDICTED: rab3 GTPase-activating protein non-catalytic subunit-like [Glycine max]

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 275/401 (68%), Positives = 332/401 (82%), Gaps = 10/401 (2%)

Query: 1   MSKRTHTTEVGSIACTDLSDLGAGKEGWLVNDPNLLCALDMHTIALANR-----YQTVII 55
           M++R++ TE+G IAC +L +LGAGK  WLV  P LLCA+D H++ LANR           
Sbjct: 1   MARRSYKTELGCIACEELGELGAGKPHWLVETPQLLCAIDTHSLILANRSTILLLSWSSD 60

Query: 56  NWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVHRQ 115
           + A P  L  KIRP+LSPI +E I+A+EWL F + R +  GTS G  L Y L+G+L+HRQ
Sbjct: 61  SSAAPPPL--KIRPDLSPIDAESISALEWLAFRDHRVIVAGTSSGNVLFYSLRGELIHRQ 118

Query: 116 LIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGVLARFDGSEIQKMLQRWFQDSNSNFW 175
           +I+P R+LKLRVRG+++DL QDT+ EE C++M GV+A FDGS+IQ MLQ+WF++S+S FW
Sbjct: 119 MIYPSRVLKLRVRGTKKDLIQDTSSEEFCLIMSGVIAHFDGSDIQNMLQKWFEESHSRFW 178

Query: 176 DQKPKQRDSEDLENSYERLPHQLWNVSKYGPCADAAITGLMPPPLME-VQSSQRYFCAVT 234
           DQ PK  DSED  N+  ++P+QLWN+ KYG CA+AAITG+MPPPLME  QSSQRY+CAV 
Sbjct: 179 DQNPKSHDSEDFGNTDVKIPYQLWNIGKYGTCAEAAITGIMPPPLMEQQQSSQRYYCAVA 238

Query: 235 IGEDSVISAFRLSEDRSRSLVGAILSKVVPATFSTISSLSKMIWRSEQ-SPKKSEPKPQS 293
           +GED+VISA+RLSE++ RSLVGAILSKVVPATFSTISS SK+IWRSEQ SPKKS+ KPQ 
Sbjct: 239 VGEDAVISAYRLSENKGRSLVGAILSKVVPATFSTISSFSKLIWRSEQSSPKKSDQKPQP 298

Query: 294 FARASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASC 353
           FARASPLTCLKDHPRKGE+LTLSPSG+LAAITDSLGRILLLDTQALVVVRLWKGYRDASC
Sbjct: 299 FARASPLTCLKDHPRKGEKLTLSPSGTLAAITDSLGRILLLDTQALVVVRLWKGYRDASC 358

Query: 354 VFMEMLVNKD-AATSSAYYAPVKSDYCLCLAIHAPRKGIIE 393
           +FMEMLVNKD A++SS+Y  P+KSDYCLCLAIHAPRKGIIE
Sbjct: 359 LFMEMLVNKDIASSSSSYSEPLKSDYCLCLAIHAPRKGIIE 399

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116998|ref|XP_002331804.1| predicted protein [Populus trichocarpa] gi|222874500|gb|EEF11631.1| predicted protein [Populus trichocarpa]

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 221/295 (74%), Positives = 268/295 (90%), Gaps = 4/295 (1%)

Query: 103 LVYDLKGDLVHRQLIHPGRILKLRVRGSRRDL--TQDTAEEEVCVVMPGVLARFDGSEIQ 160
           +VY L G L+HRQL++PGRILKLRVRG+++D+  + + + EEV VV+PGV+ARFDG++I+
Sbjct: 1   MVYSLDGLLIHRQLVYPGRILKLRVRGTKKDMMSSHEGSSEEVSVVIPGVIARFDGADIR 60

Query: 161 KMLQRWFQDSNSNFWDQKPKQRDSEDLENSYERLPHQLWNVSKYGPCADAAITGLMPPPL 220
            +LQ WFQ++NS+FWD+K K+RD E+L N ++RLPHQLW+V K+G CADAAITG+MPPPL
Sbjct: 61  NILQEWFQETNSHFWDEKSKRRDYEELGNGFKRLPHQLWSVDKFGLCADAAITGIMPPPL 120

Query: 221 MEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVGAILSKVVPATFSTISSLSKMIWRS 280
           ME+QSSQRY+ AVTIGED+VISA+RLSEDRSRSLVGAILSKV+PA FSTISS+SKMIWRS
Sbjct: 121 MEIQSSQRYYRAVTIGEDAVISAYRLSEDRSRSLVGAILSKVMPAAFSTISSVSKMIWRS 180

Query: 281 EQSP-KKSEPKPQSFARASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQAL 339
           E++P KK E KPQSFA+ASPLTCLKDHPRKGE+LTLSPSG+LAAITDSLGRILLLDTQAL
Sbjct: 181 ERTPTKKPEVKPQSFAKASPLTCLKDHPRKGEKLTLSPSGTLAAITDSLGRILLLDTQAL 240

Query: 340 VVVRLWKGYRDASCVFMEMLVNKDAA-TSSAYYAPVKSDYCLCLAIHAPRKGIIE 393
           VVVRLWKGYRDA+C+FMEMLV+ ++A  SS+++ P KSDYCLCLAIHAPRKGIIE
Sbjct: 241 VVVRLWKGYRDANCLFMEMLVSMNSAGASSSHHEPSKSDYCLCLAIHAPRKGIIE 295

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115478506|ref|NP_001062848.1| Os09g0315800 [Oryza sativa Japonica Group] gi|51091645|dbj|BAD36414.1| rab3-GAP regulatory domain-like [Oryza sativa Japonica Group] gi|113631081|dbj|BAF24762.1| Os09g0315800 [Oryza sativa Japonica Group] gi|218201904|gb|EEC84331.1| hypothetical protein OsI_30840 [Oryza sativa Indica Group] gi|222641308|gb|EEE69440.1| hypothetical protein OsJ_28835 [Oryza sativa Japonica Group]

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/412 (56%), Positives = 298/412 (72%), Gaps = 22/412 (5%)

Query: 1   MSKRTHTTEVGSIA-----CTDLSDLGAG-KEGWLVNDPNLLCAL---DMHTIALANRYQ 51
           M++R H   +  +A       DL+ +GAG +EGWL +DP +L +L          +    
Sbjct: 1   MARRGHHHHLAEVALLASASEDLAAVGAGEREGWL-DDPAVLPSLAPRARALAVASAARS 59

Query: 52  TVIINWADPEGLVAKIRPELSPIASEYITAIEW--LVFEEMR-------ALAVGTSRGYF 102
            + +      G    +RP L P     I+A+EW  LV E+         A+AVGT  G+ 
Sbjct: 60  VLAVVPVAGVGGGVTVRPALGPDDGR-ISAVEWVPLVGEDAEEAGGEGVAVAVGTDAGWL 118

Query: 103 LVYDLKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGVLARFDGSEIQKM 162
           L Y L GDL+H+Q I+P +ILKL  R  + +  +D+  +E+ VV PGV+ARFDG+++Q M
Sbjct: 119 LFYSLAGDLLHKQSIYPSKILKLNFRERKENAWEDSGSDELSVVFPGVIARFDGADLQNM 178

Query: 163 LQRWFQDSNSNFWDQKPKQRDSEDLENSYERLPHQLWNVSKYGPCADAAITGLMPPPLME 222
           LQ+   +  S+ W  K +Q D+E+ ++S+ R+P Q+WNVSK+  CADAAI GLMPPPL+E
Sbjct: 179 LQKSLHEVKSHLWKDKSEQEDAEE-DSSFGRIPFQIWNVSKFSSCADAAIVGLMPPPLLE 237

Query: 223 VQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVGAILSKVVPATFSTISSLSKMIWRSEQ 282
           +QSSQR++CA+T+GED+V+SA+RLSEDRSRS+VGAILS+ V ATFSTISSLSK+IWRSE 
Sbjct: 238 LQSSQRHYCAITVGEDAVVSAYRLSEDRSRSIVGAILSRGVAATFSTISSLSKIIWRSEP 297

Query: 283 SP-KKSEPKPQSFARASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVV 341
           SP KKS PKPQSFA+ SPLTCLKD PRKGERLTLSPSG+LAAITDSLGRILLLDT ALV 
Sbjct: 298 SPTKKSRPKPQSFAKTSPLTCLKDSPRKGERLTLSPSGTLAAITDSLGRILLLDTHALVA 357

Query: 342 VRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIE 393
           VRLWKGYRDASC+F+EML+NKD A+SS +    KSDYCLCLAIHAPRKGIIE
Sbjct: 358 VRLWKGYRDASCLFVEMLLNKDKASSSLHTEYTKSDYCLCLAIHAPRKGIIE 409

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	414
TAIR|locus:2086390	455	AT3G14910 "AT3G14910" [Arabido	0.949	0.863	0.706	3.1e-154
ZFIN|ZDB-GENE-030616-610	1373	rab3gap2 "RAB3 GTPase activati	0.705	0.212	0.278	1.5e-18
UNIPROTKB|E1BVG8	1386	RAB3GAP2 "Uncharacterized prot	0.710	0.212	0.269	1.9e-18
UNIPROTKB|D4ABP4	1367	Rab3gap2 "Rab3 GTPase-activati	0.705	0.213	0.260	2e-17
RGD|1311518	1386	Rab3gap2 "RAB3 GTPase activati	0.702	0.209	0.260	7.6e-17
UNIPROTKB|E2R4W9	1540	RAB3GAP2 "Uncharacterized prot	0.702	0.188	0.262	8.7e-17
UNIPROTKB|F1S9J9	1391	RAB3GAP2 "Uncharacterized prot	0.705	0.209	0.260	1e-16
UNIPROTKB|Q9H2M9	1393	RAB3GAP2 "Rab3 GTPase-activati	0.705	0.209	0.257	1.3e-16
MGI|MGI:1916043	1366	Rab3gap2 "RAB3 GTPase activati	0.702	0.213	0.257	2.8e-16
UNIPROTKB|G5E601	1392	RAB3GAP2 "Uncharacterized prot	0.705	0.209	0.254	4.8e-16

TAIR|locus:2086390 AT3G14910 "AT3G14910" [Arabidopsis thaliana (taxid:3702)]

 Score = 1504 (534.5 bits), Expect = 3.1e-154, P = 3.1e-154
 Identities = 279/395 (70%), Positives = 337/395 (85%)

Query:     1 MSKRTHTTEVGSIACTDLSDLGAGKEGWLVNDPNLLCALDMHTIALANRYQTVIINWADP 60
             M+KR H TE+G IAC +L++LGAGKEGWLVN+PNLL ALD H++ALANR+  +I+NW DP
Sbjct:     1 MAKRIHLTELGCIACEELTELGAGKEGWLVNNPNLLSALDSHSLALANRFLILIVNWGDP 60

Query:    61 EGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVHRQLIHPG 120
             +    KIRP+LSPI +E ITAIEWLVF+++R +  GTS GY LVY + GDL+H+Q++H  
Sbjct:    61 DAPRVKIRPDLSPIEAESITAIEWLVFDDVRVVVAGTSCGYLLVYSVTGDLIHKQIVHQS 120

Query:   121 RILKLRVRGSRRDLTQDTAEEEVCVVMPGVLARFDGSEIQKMLQRWFQDSNSNFWDQKPK 180
             RILK+RVRG+++DL Q+T+ EE+C+V+PGV+ARFDGS IQ M+Q+W Q+ NSNFWDQK +
Sbjct:   121 RILKIRVRGTKKDLMQETSSEEICIVLPGVIARFDGSNIQSMVQKWVQEKNSNFWDQKNR 180

Query:   181 QRDSEDLENSYERLPHQLWNVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSV 240
             + D+ED  + Y+RLP+Q+WNV+K G C DA +TG+MPPPL+E+QSSQRY+CAVTIGEDSV
Sbjct:   181 KGDAEDTGSLYQRLPYQIWNVNKNGVCVDATVTGVMPPPLLELQSSQRYYCAVTIGEDSV 240

Query:   241 ISAFRLSEDRSRSLVGAILSKVVPATFSTISSLSKMIWRS-EQSPK-KSEPKPQSFARAS 298
             ISA+RLSEDR RSLVGAILSKVVPA  STI+S SK+IWRS +QSPK K E K QSFARAS
Sbjct:   241 ISAYRLSEDRGRSLVGAILSKVVPAAASTIASFSKLIWRSNDQSPKRKPEAKTQSFARAS 300

Query:   299 PLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEM 358
              LTC+KD+PRKGE+LTLSPSG+LAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEM
Sbjct:   301 SLTCIKDYPRKGEKLTLSPSGTLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEM 360

Query:   359 LVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIE 393
             L  KD   S  +  PVKSDYCLCLAIHAPRKGIIE
Sbjct:   361 LAKKDKGKSVIHTEPVKSDYCLCLAIHAPRKGIIE 395

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-030616-610 rab3gap2 "RAB3 GTPase activating protein subunit 2 (non-catalytic)" [Danio rerio (taxid:7955)]

 Score = 255 (94.8 bits), Expect = 1.5e-18, P = 1.5e-18
 Identities = 90/323 (27%), Positives = 149/323 (46%)

Query:    93 LAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAE--EEVCVVMPGV 150
             + VG S GY   Y   G L+  QL+H   +L+L+ R           E  EE+ ++ P  
Sbjct:   156 IVVGFSSGYVRFYTESGVLLLAQLLHEDPVLRLKCRTYEIPRHPGVTEQHEELSILYPAA 215

Query:   151 LARFDGSEIQKMLQRWFQD------SNSNFWDQKP---KQRDSEDLENSYERLPHQLWNV 201
             L   DG  + + L+           + S+     P   K+   +D++   +     +  +
Sbjct:   216 LVTIDGFSLFQSLRACRNQVARAAAAGSDVIQPPPLAYKKWGLQDMDTIADHSSIGITTL 275

Query:   202 SKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVG----A 257
             S +    +A+I G     +     +   +  +T+G       F   E  S+ L+     A
Sbjct:   276 SVFDQMKNASILGGFHASVKGSPPAMSQY--ITVGGGPYTGFFYAIEGSSQPLLSHVALA 333

Query:   258 ILSKVVPATFSTISSLSKMIWRS---EQSPKKSEPKPQSFARASPLTC-LKDHPRKGERL 313
             + SK+  A FS  S    + W+S   E+S +K +PK +  A A P+   L D  R GE +
Sbjct:   334 VASKLTSALFSAASGW--LGWKSKNEEESVQKQKPKVEP-ATALPVRFGLPDSRRHGESI 390

Query:   314 TLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLV---NKDAATSSAY 370
              LSP  ++A +TD  GR+ LLD    + +R+WKGYRDA   ++++      +D ATS + 
Sbjct:   391 CLSPCNTMAGVTDDFGRVTLLDVARGIAIRMWKGYRDAQLGWVQVSEARGERDIATSPSM 450

Query:   371 YAPVKSDYCLCLAIHAPRKGIIE 393
               P +  +   L I+APR+GI+E
Sbjct:   451 --PRR--HAQFLVIYAPRRGILE 469

GO:0005179 "hormone activity" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0043087 "regulation of GTPase activity" evidence=IEA

UNIPROTKB|E1BVG8 RAB3GAP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 254 (94.5 bits), Expect = 1.9e-18, P = 1.9e-18
 Identities = 89/330 (26%), Positives = 150/330 (45%)

Query:    93 LAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAE--EEVCVVMPGV 150
             + VG + GY   Y   G L+  QL++   +L+L+ R           E  EE+ ++ P  
Sbjct:   156 IVVGFTSGYVRFYTESGVLLLAQLLNEDPVLQLKCRTYEIPRHPGVTEQNEELSILYPAA 215

Query:   151 LARFDGSEIQKMLQ-------RWFQDSNSNFWDQKP----KQRDSEDLENSYERLPHQLW 199
             +   DG  + + L+       R     N N   Q P    K+   +D++   +     + 
Sbjct:   216 IVTIDGFSLFQSLRACRNQVARAAASGNENV--QPPPLAYKKWGLQDVDTIVDHASVGIM 273

Query:   200 NVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVG--- 256
              +S +     A+  G     +     +   +  VT+G +     F   E  S+ L+    
Sbjct:   274 TLSPFDQMKTASNIGGYNAAIKNSPPAMSQY--VTVGSNPFTGFFFALEGSSQPLLSHVA 331

Query:   257 -AILSKVVPATFSTISSLSKMIWRS--EQSP-KKSEPKPQSFARASPLTC---LKDHPRK 309
              A+ SK+  A F   S    + W+S  E+ P +K +PK +    A+PL     + D  R 
Sbjct:   332 LAVASKLTSALFHAASVSGWLGWKSKHEEEPVQKQKPKVEP---ATPLAVRFGIPDSRRH 388

Query:   310 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVN-KDAATSS 368
             GE++ LSP  +LAA+TD  GR++LLD    + +R+WKGYRDA   +++ + +  +  T  
Sbjct:   389 GEKICLSPCNTLAAVTDDFGRVILLDVTRGLAIRMWKGYRDAEVGWIQTVEDLHERETEK 448

Query:   369 AYYAPVKSDYCLC-----LAIHAPRKGIIE 393
               Y+P  +  C       L I+APR+GI+E
Sbjct:   449 IDYSPFGNAQCPSRVAQFLVIYAPRRGILE 478

GO:0043087 "regulation of GTPase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|D4ABP4 Rab3gap2 "Rab3 GTPase-activating protein non-catalytic subunit" [Rattus norvegicus (taxid:10116)]

 Score = 245 (91.3 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 86/330 (26%), Positives = 149/330 (45%)

Query:    93 LAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAE--EEVCVVMPGV 150
             + VG + GY   Y   G L+  QL++  R+L+L+ R           E  EE+ ++ P  
Sbjct:   155 IVVGFTSGYVRFYTESGVLLLAQLLNEDRVLQLKCRTYEIPRHPGVTEQNEELSILYPAA 214

Query:   151 LARFDGSEIQKMLQ-------RWFQDSNSNFWDQKP----KQRDSEDLENSYERLPHQLW 199
             +   DG  + + L+       +     N N   Q P    K+   +D++   +     + 
Sbjct:   215 IVTIDGFSLFQSLRACRNQVAKAAASGNENI--QPPPLAYKKWGLQDIDTIIDHASIGIM 272

Query:   200 NVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVG--- 256
              +S +     A+  G     +     +   +  +T+G       F   E  ++ L+    
Sbjct:   273 TLSPFDQMKTASNIGGFNAAIKNSPPAMSQY--ITVGSSPFTGFFYALEGSTQPLLSHVA 330

Query:   257 -AILSKVVPATFSTISSLSKMIWRS---EQSPKKSEPKPQSFARASPLTC---LKDHPRK 309
              A+ SK+  A FS  S    + W+S   E++ +K +PK +    A+PL     L D  R 
Sbjct:   331 LAVASKLTSALFSAASGW--LGWKSKHEEETVQKQKPKMEP---ATPLAVRFGLPDSRRH 385

Query:   310 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVN-KDAATSS 368
             GE + LSP  +LAA+TD  GR++LLD    + +R+WKGYRDA   +++++ +  +     
Sbjct:   386 GESICLSPCNTLAAVTDDFGRVILLDVARGIAIRMWKGYRDAQIGWIQIVEDLHERVPEK 445

Query:   369 AYYAPV-----KSDYCLCLAIHAPRKGIIE 393
               ++P       S     L I+APR+GI+E
Sbjct:   446 GDFSPFGNTQGPSRVAQFLVIYAPRRGILE 475

GO:0043087 "regulation of GTPase activity" evidence=IEA

RGD|1311518 Rab3gap2 "RAB3 GTPase activating protein subunit 2" [Rattus norvegicus (taxid:10116)]

 Score = 240 (89.5 bits), Expect = 7.6e-17, P = 7.6e-17
 Identities = 86/330 (26%), Positives = 150/330 (45%)

Query:    93 LAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAE--EEVCVVMPGV 150
             + VG + GY   Y  +G L+  QL++  R+L+L+ R           E  EE+ ++ P  
Sbjct:   155 IVVGFTSGYVRFYT-EGVLLLAQLLNEDRVLQLKCRTYEIPRHPGVTEQNEELSILYPAA 213

Query:   151 LARFDGSEIQKMLQ-------RWFQDSNSNFWDQKP----KQRDSEDLENSYERLPHQLW 199
             +   DG  + + L+       +     N N   Q P    K+   +D++   +     + 
Sbjct:   214 IVTIDGFSLFQSLRACRNQVAKAAASGNENI--QPPPLAYKKWGLQDIDTIIDHASIGIM 271

Query:   200 NVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVG--- 256
              +S +     A+  G     +     +   +  +T+G       F   E  ++ L+    
Sbjct:   272 TLSPFDQMKTASNIGGFNAAIKNSPPAMSQY--ITVGSSPFTGFFYALEGSTQPLLSHVA 329

Query:   257 -AILSKVVPATFSTISSLSKMIWRS---EQSPKKSEPKPQSFARASPLTC---LKDHPRK 309
              A+ SK+  A FS  S    + W+S   E++ +K +PK +    A+PL     L D  R 
Sbjct:   330 LAVASKLTSALFSAASGW--LGWKSKHEEETVQKQKPKMEP---ATPLAVRFGLPDSRRH 384

Query:   310 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVN-KDAATSS 368
             GE + LSP  +LAA+TD  GR++LLD    + +R+WKGYRDA   +++++ +  +     
Sbjct:   385 GESICLSPCNTLAAVTDDFGRVILLDVARGIAIRMWKGYRDAQIGWIQIVEDLHERVPEK 444

Query:   369 AYYAPV-----KSDYCLCLAIHAPRKGIIE 393
               ++P       S     L I+APR+GI+E
Sbjct:   445 GDFSPFGNTQGPSRVAQFLVIYAPRRGILE 474

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0030234 "enzyme regulator activity" evidence=IDA

GO:0043087 "regulation of GTPase activity" evidence=IEA;IDA

GO:0046982 "protein heterodimerization activity" evidence=IPI

UNIPROTKB|E2R4W9 RAB3GAP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 240 (89.5 bits), Expect = 8.7e-17, P = 8.7e-17
 Identities = 87/331 (26%), Positives = 152/331 (45%)

Query:    93 LAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAE--EEVCVVMPGV 150
             + VG + GY   Y   G L+  QL++   +L+L+ R           E  EE+ ++ P  
Sbjct:   302 IVVGFTSGYVRFYTENGVLLLAQLLNEELVLQLKCRTYEIPRHPGVTEQNEELSILYPAA 361

Query:   151 LARFDGSEIQKMLQ-------RWFQDSNSNFWDQKP----KQRDSEDLENSYERLPHQLW 199
             +   DG  + + L+       +     N N   Q P    K+   +D++   +     + 
Sbjct:   362 IVTIDGFSLFQSLRACRNQVAKAAASGNENI--QPPPLAYKKWGLQDIDTIIDHASIGIM 419

Query:   200 NVSKYGPCADAA-ITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVG-- 256
              +S +     A+ I G        + +  +Y   +T+G +     F   E  ++ L+   
Sbjct:   420 TLSPFDQMKTASNIGGFNAAIKNSLPAMSQY---ITVGSNPFTGFFYALEGSTQPLLSHV 476

Query:   257 --AILSKVVPATFSTISSLSKMIWRS---EQSPKKSEPKPQSFARASPLTC---LKDHPR 308
               A+ SK+  A F+  S    + W+S   E++ +K +PK +    A+PL     L D  R
Sbjct:   477 ALAVASKLTSALFNAASGW--LGWKSKHEEEAVQKQKPKVEP---ATPLAVRFGLPDSRR 531

Query:   309 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVN-KDAATS 367
              GE + LSP  +LAA+TD  GR++LLD    + +R+WKGYRDA   +++++ +  +    
Sbjct:   532 HGESICLSPCNTLAAVTDDFGRVILLDVARGIAIRMWKGYRDAQIGWIQIVEDLHERVPE 591

Query:   368 SAYYAPV-----KSDYCLCLAIHAPRKGIIE 393
              A ++P       S     L I+APR+GI+E
Sbjct:   592 KADFSPFGNTQGPSRVAQFLVIYAPRRGILE 622

GO:0043087 "regulation of GTPase activity" evidence=IEA

UNIPROTKB|F1S9J9 RAB3GAP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 239 (89.2 bits), Expect = 1.0e-16, P = 1.0e-16
 Identities = 86/330 (26%), Positives = 150/330 (45%)

Query:    93 LAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAE--EEVCVVMPGV 150
             + VG S GY   Y   G L+  QL++   +L+L+ R           E  EE+ ++ P  
Sbjct:   155 IVVGFSSGYLRFYTQNGVLLLAQLLNEDLVLQLKCRTYEIPRHPGVTEQNEELSILYPAA 214

Query:   151 LARFDGSEIQKMLQ-------RWFQDSNSNFWDQKP----KQRDSEDLENSYERLPHQLW 199
             +   DG  + + L+       +     N N   Q P    K+   +D++   +     + 
Sbjct:   215 IVTIDGFSLFQSLRACRNQVAKAAASGNENI--QPPPLAYKKWGLQDIDTIIDHASIGIM 272

Query:   200 NVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVG--- 256
              +S +     A+  G     +     +   +  +T+G +     F   E  ++ L+    
Sbjct:   273 TLSPFDQMKTASNIGGYNAAIKNSPPAMSQY--ITVGSNPFTGFFYALEGSTQPLLSHVA 330

Query:   257 -AILSKVVPATFSTISSLSKMIWRS---EQSPKKSEPKPQSFARASPLTC---LKDHPRK 309
              A+ SK+  A F+  S    + W+S   E++  + +PK +    A+PL     L D  R 
Sbjct:   331 LAVASKLTSALFNAASGW--LGWKSKHEEEAVPRQKPKVEP---ATPLAVRFGLPDSRRH 385

Query:   310 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVN-----KDA 364
             GE + LSP  +LAA+TD  GR++LLD    + +R+WKGYRDA   +++++ +      + 
Sbjct:   386 GESICLSPCNTLAAVTDDFGRVILLDVTRGIAIRMWKGYRDAQTGWIQIVEDLHERVPER 445

Query:   365 ATSSAYYAPV-KSDYCLCLAIHAPRKGIIE 393
             A  S + +P   S     L I+APR+GI+E
Sbjct:   446 ADFSPFGSPQGPSRVAQFLVIYAPRRGILE 475

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0043087 "regulation of GTPase activity" evidence=IEA

UNIPROTKB|Q9H2M9 RAB3GAP2 "Rab3 GTPase-activating protein non-catalytic subunit" [Homo sapiens (taxid:9606)]

 Score = 238 (88.8 bits), Expect = 1.3e-16, P = 1.3e-16
 Identities = 85/330 (25%), Positives = 149/330 (45%)

Query:    93 LAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAE--EEVCVVMPGV 150
             + VG + GY   Y   G L+  QL++   +L+L+ R           E  EE+ ++ P  
Sbjct:   156 IVVGFTSGYVRFYTENGVLLLAQLLNEDPVLQLKCRTYEIPRHPGVTEQNEELSILYPAA 215

Query:   151 LARFDGSEIQKMLQ-------RWFQDSNSNFWDQKP----KQRDSEDLENSYERLPHQLW 199
             +   DG  + + L+       +     N N   Q P    K+   +D++   +     + 
Sbjct:   216 IVTIDGFSLFQSLRACRNQVAKAAASGNENI--QPPPLAYKKWGLQDIDTIIDHASVGIM 273

Query:   200 NVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVG--- 256
              +S +     A+  G     +     +   +  +T+G +     F   E  ++ L+    
Sbjct:   274 TLSPFDQMKTASNIGGFNAAIKNSPPAMSQY--ITVGSNPFTGFFYALEGSTQPLLSHVA 331

Query:   257 -AILSKVVPATFSTISSLSKMIWRS---EQSPKKSEPKPQSFARASPLTC---LKDHPRK 309
              A+ SK+  A F+  S    + W+S   E++ +K +PK +    A+PL     L D  R 
Sbjct:   332 LAVASKLTSALFNAASGW--LGWKSKHEEEAVQKQKPKVEP---ATPLAVRFGLPDSRRH 386

Query:   310 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVN-KDAATSS 368
             GE + LSP  +LAA+TD  GR++LLD    + +R+WKGYRDA   +++ + +  +     
Sbjct:   387 GESICLSPCNTLAAVTDDFGRVILLDVARGIAIRMWKGYRDAQIGWIQTVEDLHERVPEK 446

Query:   369 AYYAPV-----KSDYCLCLAIHAPRKGIIE 393
             A ++P       S     L I+APR+GI+E
Sbjct:   447 ADFSPFGNSQGPSRVAQFLVIYAPRRGILE 476

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0030234 "enzyme regulator activity" evidence=ISS

GO:0046982 "protein heterodimerization activity" evidence=ISS

GO:0043087 "regulation of GTPase activity" evidence=ISS

GO:0006886 "intracellular protein transport" evidence=TAS

GO:0008047 "enzyme activator activity" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0043085 "positive regulation of catalytic activity" evidence=TAS

GO:0043547 "positive regulation of GTPase activity" evidence=TAS

MGI|MGI:1916043 Rab3gap2 "RAB3 GTPase activating protein subunit 2" [Mus musculus (taxid:10090)]

 Score = 235 (87.8 bits), Expect = 2.8e-16, P = 2.8e-16
 Identities = 85/330 (25%), Positives = 149/330 (45%)

Query:    93 LAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAE--EEVCVVMPGV 150
             + VG + GY   Y  +G L+  QL++  ++L+L+ R           E  EE+ ++ P  
Sbjct:   155 IVVGFTSGYVRFYT-EGVLLLAQLLNEDKVLQLKCRTYEIPRHPGVTEQNEELSILYPAA 213

Query:   151 LARFDGSEIQKMLQ-------RWFQDSNSNFWDQKP----KQRDSEDLENSYERLPHQLW 199
             +   DG  + + L+       +     N N   Q P    K+   +D++   +     + 
Sbjct:   214 IVTIDGFSLFQSLRACRNQVAKAAASGNENI--QPPPLAYKKWGLQDIDTIIDHASVGIM 271

Query:   200 NVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVG--- 256
              +S +     A+  G     +     +   +  +T+G       F   E  ++ L+    
Sbjct:   272 TLSPFDQMKTASNIGGFNAAIKNSPPAMSQY--ITVGSSPFTGFFYALEGSTQPLLSHVA 329

Query:   257 -AILSKVVPATFSTISSLSKMIWRS---EQSPKKSEPKPQSFARASPLTC---LKDHPRK 309
              A+ SK+  A FS  S    + W+S   E + +K +PK +    A+PL     L D  R 
Sbjct:   330 LAVASKLTSALFSAASGW--LGWKSKHEEDTVQKQKPKMEP---ATPLAVRFGLPDSRRH 384

Query:   310 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVN-KDAATSS 368
             GE + LSP  +LAA+TD  GR++LLD    + +R+WKGYRDA   +++++ +  +     
Sbjct:   385 GESICLSPCNTLAAVTDDFGRVILLDVARGIAIRMWKGYRDAQVGWIQIVEDLHERVPEK 444

Query:   369 AYYAPV-----KSDYCLCLAIHAPRKGIIE 393
               ++P       S     L I+APR+GI+E
Sbjct:   445 GGFSPFGNTQGPSRVAQFLVIYAPRRGILE 474

GO:0003674 "molecular_function" evidence=ND

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0043087 "regulation of GTPase activity" evidence=IEA

UNIPROTKB|G5E601 RAB3GAP2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 233 (87.1 bits), Expect = 4.8e-16, P = 4.8e-16
 Identities = 84/330 (25%), Positives = 148/330 (44%)

Query:    93 LAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAE--EEVCVVMPGV 150
             + VG + GY   Y   G L+  QL++   +L+L+ R           E  EE+ ++ P  
Sbjct:   155 IVVGFTSGYVRFYTENGVLLLAQLLNEDSVLQLKCRTYEIPRHPGVTEQNEELSILYPAA 214

Query:   151 LARFDGSEIQKMLQ-------RWFQDSNSNFWDQKP----KQRDSEDLENSYERLPHQLW 199
             +   DG  + + L+       +     N N   Q P    K+   +D++   +     + 
Sbjct:   215 IVTIDGFSLFQSLRACRNQVAKAAASGNENI--QPPPLAYKKWGLQDIDTIIDHASIGIM 272

Query:   200 NVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVG--- 256
              +S +     A+  G     +     +   +  +T+G       F   E  ++ L+    
Sbjct:   273 TLSPFDQMKTASNIGGYNAAIKNSPPAMSQY--ITVGSSPFTGFFYALEGSTQPLLSHVA 330

Query:   257 -AILSKVVPATFSTISSLSKMIWRS---EQSPKKSEPKPQSFARASPLTC---LKDHPRK 309
              A+ SK+  A F+  S    + W+S   E++ +K +PK +    A+PL     L D  R 
Sbjct:   331 LAVASKLTSALFNAASGW--LGWKSKHEEEAFQKQKPKVEP---ATPLAVRFGLPDSRRH 385

Query:   310 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVN-KDAATSS 368
             GE + LSP  +LAA+TD  GR++LLD    + +R+WKGYRDA   +++++ +  +     
Sbjct:   386 GESICLSPCNTLAAVTDDFGRVILLDVARGIAIRMWKGYRDAQTGWIQIVEDLHERVPEK 445

Query:   369 AYYAPVKSDY-----CLCLAIHAPRKGIIE 393
               ++P  S          L I+APR+GI+E
Sbjct:   446 GDFSPFGSPQGPSRVAQFLVIYAPRRGILE 475

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0043087 "regulation of GTPase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	414
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	100.0
KOG2727	1244	consensus Rab3 GTPase-activating protein, non-cata	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	97.85
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	97.76
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	97.42
KOG0263	707	consensus Transcription initiation factor TFIID, s	96.89
KOG0266	456	consensus WD40 repeat-containing protein [General	96.66
PTZ00421	493	coronin; Provisional	96.62
KOG1539	910	consensus WD repeat protein [General function pred	96.61
PLN00181	793	protein SPA1-RELATED; Provisional	96.55
KOG0266	456	consensus WD40 repeat-containing protein [General	96.55
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	96.54
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	96.23
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	96.21
KOG0649	325	consensus WD40 repeat protein [General function pr	95.99
KOG0263	707	consensus Transcription initiation factor TFIID, s	95.94
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	95.9
PF12341	27	DUF3639: Protein of unknown function (DUF3639) ; I	95.79
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	95.78
KOG0639	705	consensus Transducin-like enhancer of split protei	94.99
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	94.81
KOG2727	1244	consensus Rab3 GTPase-activating protein, non-cata	94.67
PTZ00421	493	coronin; Provisional	94.5
KOG0315	311	consensus G-protein beta subunit-like protein (con	94.47
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	94.23
KOG0279	315	consensus G protein beta subunit-like protein [Sig	94.12
KOG0316	307	consensus Conserved WD40 repeat-containing protein	94.1
KOG1273	405	consensus WD40 repeat protein [General function pr	93.94
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	93.84
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	93.82
PTZ00420	568	coronin; Provisional	93.79
KOG0295	406	consensus WD40 repeat-containing protein [Function	93.72
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	92.98
PTZ00420	568	coronin; Provisional	92.96
PLN00181	793	protein SPA1-RELATED; Provisional	92.73
PF14727	418	PHTB1_N: PTHB1 N-terminus	91.63
KOG0308	735	consensus Conserved WD40 repeat-containing protein	91.16
KOG1274	933	consensus WD40 repeat protein [General function pr	91.03
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	90.63
KOG0284	464	consensus Polyadenylation factor I complex, subuni	90.55
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	89.89
KOG0646	476	consensus WD40 repeat protein [General function pr	89.83
KOG0279	315	consensus G protein beta subunit-like protein [Sig	88.95
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	88.75
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	88.54
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	88.25
KOG0282	503	consensus mRNA splicing factor [Function unknown]	88.14
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	88.07
KOG0283	712	consensus WD40 repeat-containing protein [Function	87.56
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	86.82
KOG0318	603	consensus WD40 repeat stress protein/actin interac	86.76
KOG1407	313	consensus WD40 repeat protein [Function unknown]	86.67
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	86.29
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	86.28
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	86.21
KOG0288	459	consensus WD40 repeat protein TipD [General functi	85.97
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	85.78
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	84.91
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	84.83
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	84.47
KOG0296	399	consensus Angio-associated migratory cell protein	84.16
KOG0275	508	consensus Conserved WD40 repeat-containing protein	84.08
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	83.83
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	83.76
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	83.5
KOG0318	603	consensus WD40 repeat stress protein/actin interac	83.07
KOG1912	1062	consensus WD40 repeat protein [General function pr	82.61
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	82.15
KOG0316	307	consensus Conserved WD40 repeat-containing protein	81.96
KOG0282	503	consensus mRNA splicing factor [Function unknown]	81.84
COG2319	466	FOG: WD40 repeat [General function prediction only	81.61
KOG2110	391	consensus Uncharacterized conserved protein, conta	80.22
KOG0293	519	consensus WD40 repeat-containing protein [Function	80.18
KOG0646	476	consensus WD40 repeat protein [General function pr	80.12

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=100.00  E-value=2.1e-100  Score=782.62  Aligned_cols=365  Identities=31%  Similarity=0.452  Sum_probs=310.8

Q ss_pred             cccCCCeeeeccCcceeeeeecceEEE--EeecCCC------CCceeecccCCCCCCCeEEEEEeEEe---------CCc
Q 015021           28 WLVNDPNLLCALDMHTIALANRYQTVI--INWADPE------GLVAKIRPELSPIASEYITAIEWLVF---------EEM   90 (414)
Q Consensus        28 WL~~~~~~~~sp~~~~la~A~~~~~v~--~~w~~~~------~~~v~~~g~l~~~~~e~ITs~~~lpl---------~dw   90 (414)
                      ||+| |++++||+||+||+|+++|+||  .+|+.++      .+.+.|+|+|+.+++|+|||++||||         +||
T Consensus         1 WL~~-~~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw   79 (415)
T PF14655_consen    1 WLQD-CSISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDW   79 (415)
T ss_pred             Cccc-ceEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCc
Confidence            9999 9999999999999999999999  5895533      24489999999977799999999999         899


Q ss_pred             EEEEEeccccEEEEEecCCcEEeecccCccceeEEEEecccCCCCCCCCCCeEEEEeCCeEEEEeChhHHHHHHHHHHhc
Q 015021           91 RALAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGVLARFDGSEIQKMLQRWFQDS  170 (414)
Q Consensus        91 ~~I~VG~ssG~vrfyte~G~LL~sQ~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ily~~~iv~IdG~sL~~~Lr~c~~~~  170 (414)
                      +||||||++||||||||+|+|||+|+||++||++||||+++++..++...|||+|+||++||+|||++|+++|++|++|+
T Consensus        80 ~~I~VG~ssG~vrfyte~G~LL~~Q~~h~~pV~~ik~~~~~~~~~~~~~~eel~ily~~~v~~Idg~sL~~~L~~~~~~~  159 (415)
T PF14655_consen   80 TCIAVGTSSGYVRFYTENGVLLLSQLLHEEPVLKIKCRSTKIPRHPGDSSEELSILYPSAVVIIDGFSLFSVLRACRNQV  159 (415)
T ss_pred             EEEEEEecccEEEEEeccchHHHHHhcCccceEEEEecccCCCCCCcccccEEEEEECCEEEEEecHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999866666666999999999999999999999999999999


Q ss_pred             cccccCCCCccCCCcccccccCCccceecccCCCCCceeeEEeCCCCCCchhhh--------------ccccceeEEEeC
Q 015021          171 NSNFWDQKPKQRDSEDLENSYERLPHQLWNVSKYGPCADAAITGLMPPPLMEVQ--------------SSQRYFCAVTIG  236 (414)
Q Consensus       171 ~~~~w~~~~~~~~~~~~~~~~~~L~ykKW~l~~~~~i~Daa~~G~~~p~~~d~~--------------s~~~~~~~i~vG  236 (414)
                      +++.|+.+       + .+.+++|+||||+|++++.|+|++++|+++|++||++              +...++++|++|
T Consensus       160 ~~~~~~~~-------~-~~~~~~L~ykKw~l~~~~~i~D~~~~G~~~~~~fd~l~~aS~~gf~a~~~~s~~~~~~~i~~G  231 (415)
T PF14655_consen  160 ARGAASGS-------D-SPAPPPLSYKKWNLQSQDTINDAAICGPMPPSTFDHLVTASIGGFNAKYRSSPPRMSRYITVG  231 (415)
T ss_pred             hhhhhccc-------c-cCCCCccceeEecCCCCCcEeeEEEecCCCCcHHHHHHhhhcccccceeecCCcceEEEEEec
Confidence            99865321       1 3347889999999999999999999999999999984              335778999999


Q ss_pred             CCceeEEEEeccCCCcchhhhhhhhhhH-HHHHHhhhhhhhhhcC--CCCCC-CC-----CCCCcccccCCCCccccCCC
Q 015021          237 EDSVISAFRLSEDRSRSLVGAILSKVVP-ATFSTISSLSKMIWRS--EQSPK-KS-----EPKPQSFARASPLTCLKDHP  307 (414)
Q Consensus       237 ~~P~la~y~~~~~~~~s~~~al~S~va~-av~S~v~S~ak~~W~~--~~~~~-~~-----e~kp~~~~~a~pl~~l~D~~  307 (414)
                      ++||+|||+.+|+.+++    ++++|+. +|.|+++++++.+|++  .++++ +.     ++++++.++..+.++|+|.+
T Consensus       232 ~~P~v~f~~~~e~~s~~----~ls~va~~aVas~l~sav~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~l~D~~  307 (415)
T PF14655_consen  232 SSPFVSFYYASEGSSQP----LLSDVASSAVASKLTSAVSGWLGWGSWRSEQQPQEKQPPEPKPEPAAPLPMRFGLPDSK  307 (415)
T ss_pred             CCceEEEEEccCCCCcc----cHHHHHHHHHHHHHHhhhHhhcccCCCCCccccccccccccCcCCCcccceEEeeccCC
Confidence            99999999888877765    5667777 8888888876634432  22221 11     22333333333336799999


Q ss_pred             ceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEEEcC
Q 015021          308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP  387 (414)
Q Consensus       308 R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap  387 (414)
                      |++++|++||+|+|||+||++|||+|+|+++++++|||||||||||+|+++.+..+...+..+....+.+++||||||||
T Consensus       308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap  387 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP  387 (415)
T ss_pred             ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence            99999999999999999999999999999999999999999999999999998876432333444445678999999999


Q ss_pred             CCCeEEEeeCCCCcceee
Q 015021          388 RKGIIEHLAGMADENWTT  405 (414)
Q Consensus       388 rRg~lEvW~~~~g~~v~~  405 (414)
                      |||+||||+||||+||++
T Consensus       388 rRg~lEvW~~~~g~Rv~a  405 (415)
T PF14655_consen  388 RRGILEVWSMRQGPRVAA  405 (415)
T ss_pred             cCCeEEEEecCCCCEEEE
Confidence            999999999999999954

>KOG2727 consensus Rab3 GTPase-activating protein, non-catalytic subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-90  Score=739.94  Aligned_cols=381  Identities=44%  Similarity=0.626  Sum_probs=331.8

Q ss_pred             CCCCcccceeeeeeecccccccCCCCCcccCCCeeeeccCcceeeeeecceEEE--EeecCCCCC---ceeecccCCCCC
Q 015021            1 MSKRTHTTEVGSIACTDLSDLGAGKEGWLVNDPNLLCALDMHTIALANRYQTVI--INWADPEGL---VAKIRPELSPIA   75 (414)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~g~~~~~WL~~~~~~~~sp~~~~la~A~~~~~v~--~~w~~~~~~---~v~~~g~l~~~~   75 (414)
                      |.+|.|.+|.||+.|+|+.+.|+++  ||++ |+++++|++|++++|+++||||  .+|.+.+++   .|.|+|+|++++
T Consensus         1 ~w~~w~~~e~g~~e~ee~t~lg~~~--WL~~-cnl~l~s~~d~~~~A~e~rfvfL~~~Wk~pd~p~~~~Vgw~g~l~dpe   77 (1244)
T KOG2727|consen    1 MWKRWHLTELGCIECEELTELGAGK--WLLV-CNLNLLSALDSHSLALENRFVFLIVNWKDPDAPVYKRVGWRGDLSDPE   77 (1244)
T ss_pred             CcccccccccCchhhhhhhcccccc--hHHh-cCcccCcchHHHHHHhhcceEEEEecCCCCCCCceEEEEeccccCCcc
Confidence            7789999999999999999999988  9999 9999999999999999999999  679999866   499999999988


Q ss_pred             CCeEEEEEeEEe--------CCcEEEEEeccccEEEEEecCCcEEeecccCccceeEEEEecccCCCCCCCCCCeEEEEe
Q 015021           76 SEYITAIEWLVF--------EEMRALAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVM  147 (414)
Q Consensus        76 ~e~ITs~~~lpl--------~dw~~I~VG~ssG~vrfyte~G~LL~sQ~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ily  147 (414)
                      +|+|||++|+||        +|||||||||++|||+||||+|.|||+|.+|++||++||||+++.       +++++|+|
T Consensus        78 ~e~ITa~~clpl~n~s~dgr~dwtcVavGt~sGyV~FYTe~Gvllf~Q~~~edPVl~lk~r~~k~-------d~~l~i~y  150 (1244)
T KOG2727|consen   78 AESITAIECLPLDNVSHDGRVDWTCVAVGTSSGYVLFYTETGVLLFKQIVHEDPVLKLKVRGTKK-------DLMLEISY  150 (1244)
T ss_pred             cceeeeeeeeeccccccccccceeEEEEecccceEEEEecccHHHHHHHhccCccceEEEEEeec-------CcEEEEee
Confidence            999999999999        799999999999999999999999999999999999999999976       89999999


Q ss_pred             CCeEEEEeChhHHHHHHHHHHhccccccCCCCccCCCcccccccCCccceeccc-CC-CCCceeeEEeCCCCCCchhhh-
Q 015021          148 PGVLARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDLENSYERLPHQLWNV-SK-YGPCADAAITGLMPPPLMEVQ-  224 (414)
Q Consensus       148 ~~~iv~IdG~sL~~~Lr~c~~~~~~~~w~~~~~~~~~~~~~~~~~~L~ykKW~l-~~-~~~i~Daa~~G~~~p~~~d~~-  224 (414)
                      |.++|+|+|++|++.|++|+++++++.      ..+  +.....++++||||.+ ++ ...|.|+++.+...||++|+. 
T Consensus       151 p~~~~~I~g~sl~~~L~ncq~~Vqkaa------~Ek--nsn~~~~~~~~qk~~l~qdi~~~I~hai~~~~~~ppt~Dq~v  222 (1244)
T KOG2727|consen  151 PEICIVIPGVSLRFDLSNCQSMVQKAA------QEK--NSNFWDQKNRKQKAELTQDIYQRIPHAIWNVNKNPPTVDQTV  222 (1244)
T ss_pred             cceEEEECCchhhhhHHHHHHHHHHHH------Hhc--cCCcCCccchhhhhhcccchhhccchheeecccCCccHHHhh
Confidence            999999999999999999999998873      111  1122457899999999 44 446777777666788989982 


Q ss_pred             --------------ccccceeEEEeCCCceeEEEEeccCCCcchhhhhhhhhhHHHHHHhhhhhhhhhcCCC--CCCCCC
Q 015021          225 --------------SSQRYFCAVTIGEDSVISAFRLSEDRSRSLVGAILSKVVPATFSTISSLSKMIWRSEQ--SPKKSE  288 (414)
Q Consensus       225 --------------s~~~~~~~i~vG~~P~la~y~~~~~~~~s~~~al~S~va~av~S~v~S~ak~~W~~~~--~~~~~e  288 (414)
                                    |-.+|++++++|++||++||+++++.+.+++++++.+|++++.|-+.|....+|+++.  +..+++
T Consensus       223 tas~~~gy~a~~k~SpPrySq~vt~ge~pf~gFf~a~eg~~~~llg~Vak~v~s~A~sn~asg~fgi~~ep~~sp~~kp~  302 (1244)
T KOG2727|consen  223 TASMPPGYLALQKPSPPRYSQAVTIGEDPFIGFFRASEGRGRSLLGAVAKKVVSAAASNIASGSFGIWREPDQSPKRKPE  302 (1244)
T ss_pred             hcccCchhhhhccCCCcceeeeEEecCCceeeeeeeccccccccHHHHHHHhhhhhhhhhhhheeeccCCCCcChhhcCC
Confidence                          2247889999999999999999999999877777777777665544443332444443  446677


Q ss_pred             CCCcccccCCCCccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccc
Q 015021          289 PKPQSFARASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSS  368 (414)
Q Consensus       289 ~kp~~~~~a~pl~~l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~  368 (414)
                      |||++.++++.+.+|+|.+|+|++|++||+|+|||+||++|||+|+|+++++|||||||||||||+|+++.+..++.   
T Consensus       303 pk~~saapa~~R~~i~D~~R~ge~lslSP~gtlAAVTD~lgRVlLlDta~~ivvr~wKGYRDAsc~fv~vkek~~~s---  379 (1244)
T KOG2727|consen  303 PKTQSAAPASSRTCIKDYPRKGEKLSLSPSGTLAAVTDSLGRVLLLDTAALIVVRLWKGYRDASCVFVEVKEKKGKS---  379 (1244)
T ss_pred             CCCCcccccceeeccccCccccceeeeCCCccEEEEecccCcEEEEehhhhhHHHHhcccccceeEEEEcccccCCC---
Confidence            78877665666678999999999999999999999999999999999999999999999999999999988765432   


Q ss_pred             cccCCCCCcceEEEEEEcCCCCeEEEeeCCCCcceee
Q 015021          369 AYYAPVKSDYCLCLAIHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       369 ~~~~~~k~~~~l~LvIyaprRg~lEvW~~~~g~~v~~  405 (414)
                         ++.+.++||||||||||||+||||.||+|++|.+
T Consensus       380 ---~~~~sRvAlFLvIyAPRrgiLEVW~~q~gpRV~A  413 (1244)
T KOG2727|consen  380 ---EPVKSRVALFLVIYAPRRGILEVWQMQTGPRVLA  413 (1244)
T ss_pred             ---ccCcCceeEEEEEecccccHHHHHHhccCCeEEE
Confidence               5677889999999999999999999999999976

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=97.85  E-value=0.018  Score=51.12  Aligned_cols=81  Identities=17%  Similarity=0.138  Sum_probs=58.7

Q ss_pred             CCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEE
Q 015021          305 DHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAI  384 (414)
Q Consensus       305 D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvI  384 (414)
                      ........+..+|+++.++++...|.|.++|+.++..++.++++.+    .+....-.+          .  .   .+++
T Consensus       175 ~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~----~i~~~~~~~----------~--~---~~~~  235 (289)
T cd00200         175 GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN----GVNSVAFSP----------D--G---YLLA  235 (289)
T ss_pred             cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCC----ceEEEEEcC----------C--C---cEEE
Confidence            3344677899999998777777799999999999999999987765    232221111          0  0   2555


Q ss_pred             EcCCCCeEEEeeCCCCccee
Q 015021          385 HAPRKGIIEHLAGMADENWT  404 (414)
Q Consensus       385 yaprRg~lEvW~~~~g~~v~  404 (414)
                      .+..+|.|.+|++++++.+.
T Consensus       236 ~~~~~~~i~i~~~~~~~~~~  255 (289)
T cd00200         236 SGSEDGTIRVWDLRTGECVQ  255 (289)
T ss_pred             EEcCCCcEEEEEcCCceeEE
Confidence            56679999999999877653

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=97.76  E-value=0.00026  Score=74.25  Aligned_cols=53  Identities=21%  Similarity=0.318  Sum_probs=47.0

Q ss_pred             ccCCCCccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecc
Q 015021          295 ARASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKG  347 (414)
Q Consensus       295 ~~a~pl~~l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKG  347 (414)
                      +...|++.|.+++--.-++.-||+|+|.|..+..|+|.++++.++.+++-.+|
T Consensus       440 ~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~  492 (524)
T KOG0273|consen  440 ESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG  492 (524)
T ss_pred             cCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC
Confidence            33557778999999999999999999999999999999999999998876655

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=97.42  E-value=0.0039  Score=64.56  Aligned_cols=79  Identities=15%  Similarity=0.192  Sum_probs=67.6

Q ss_pred             ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccc--eeeEEEEEecccccccccccCCCCCcceE
Q 015021          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA--SCVFMEMLVNKDAATSSAYYAPVKSDYCL  380 (414)
Q Consensus       303 l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdA--q~~wi~~~~~~~~~~~~~~~~~~k~~~~l  380 (414)
                      ..-+......+..|||++|+|.+.-+--|=|+|-.+|+-+-.++|+=+|  ||+|..     |            .    
T Consensus       363 mtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-----D------------s----  421 (480)
T KOG0271|consen  363 MTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-----D------------S----  421 (480)
T ss_pred             hhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-----C------------c----
Confidence            4445667889999999999999999999999999999999999999987  788863     1            1    


Q ss_pred             EEEEEcCCCCeEEEeeCCCCcc
Q 015021          381 CLAIHAPRKGIIEHLAGMADEN  402 (414)
Q Consensus       381 ~LvIyaprRg~lEvW~~~~g~~  402 (414)
                      =|++...++..|+||++++-+.
T Consensus       422 RLlVS~SkDsTLKvw~V~tkKl  443 (480)
T KOG0271|consen  422 RLLVSGSKDSTLKVWDVRTKKL  443 (480)
T ss_pred             cEEEEcCCCceEEEEEeeeeee
Confidence            1888999999999999998654

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=96.89  E-value=0.016  Score=64.01  Aligned_cols=83  Identities=17%  Similarity=0.146  Sum_probs=65.1

Q ss_pred             CCCccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCc
Q 015021          298 SPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSD  377 (414)
Q Consensus       298 ~pl~~l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~  377 (414)
                      ...+.|.-+++.+++++.||+|++.|..|..|+|++||+.+|..+...||+++.- .=+...-  + +            
T Consensus       568 ~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti-~SlsFS~--d-g------------  631 (707)
T KOG0263|consen  568 NSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTI-YSLSFSR--D-G------------  631 (707)
T ss_pred             cEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCce-eEEEEec--C-C------------
Confidence            3345688899999999999999999999999999999999999999999996632 2222211  1 0            


Q ss_pred             ceEEEEEEcCCCCeEEEeeCCC
Q 015021          378 YCLCLAIHAPRKGIIEHLAGMA  399 (414)
Q Consensus       378 ~~l~LvIyaprRg~lEvW~~~~  399 (414)
                         -..+-+.-+..|.+||+..
T Consensus       632 ---~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  632 ---NVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             ---CEEEecCCCCeEEEEEchh
Confidence               1445677789999999865

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.66  E-value=0.011  Score=62.19  Aligned_cols=88  Identities=16%  Similarity=0.156  Sum_probs=73.6

Q ss_pred             CCccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEc-CcceeEeeecccccceeeEEEEEecccccccccccCCCCCc
Q 015021          299 PLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDT-QALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSD  377 (414)
Q Consensus       299 pl~~l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~-~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~  377 (414)
                      .+..+.++.+.+..++.+|++++++.+..++.|-++|+ ..+..+|..|||.+    ++....=.+++            
T Consensus       195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~----~v~~~~f~p~g------------  258 (456)
T KOG0266|consen  195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHST----YVTSVAFSPDG------------  258 (456)
T ss_pred             hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCC----ceEEEEecCCC------------
Confidence            34557889999999999999999999999999999999 77799999999999    66444322211            


Q ss_pred             ceEEEEEEcCCCCeEEEeeCCCCcceee
Q 015021          378 YCLCLAIHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       378 ~~l~LvIyaprRg~lEvW~~~~g~~v~~  405 (414)
                         -|++.+-.++.+.||++++|+++-+
T Consensus       259 ---~~i~Sgs~D~tvriWd~~~~~~~~~  283 (456)
T KOG0266|consen  259 ---NLLVSGSDDGTVRIWDVRTGECVRK  283 (456)
T ss_pred             ---CEEEEecCCCcEEEEeccCCeEEEe
Confidence               2889999999999999999988743

>PTZ00421 coronin; Provisional

Probab=96.62  E-value=0.014  Score=62.30  Aligned_cols=88  Identities=15%  Similarity=0.126  Sum_probs=67.9

Q ss_pred             CCccccCCCceeeEEEECCCC-CEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCc
Q 015021          299 PLTCLKDHPRKGERLTLSPSG-SLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSD  377 (414)
Q Consensus       299 pl~~l~D~~R~~~~i~~sP~~-~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~  377 (414)
                      |+..|..+.+.+..|..+|++ +++|++...|.|.|+|+.++..++.++|+.+    .|....-.+++            
T Consensus       117 ~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~----~V~sla~spdG------------  180 (493)
T PTZ00421        117 PIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSD----QITSLEWNLDG------------  180 (493)
T ss_pred             ceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCC----ceEEEEEECCC------------
Confidence            444577778889999999986 6888888899999999999999999999987    33322111111            


Q ss_pred             ceEEEEEEcCCCCeEEEeeCCCCcceee
Q 015021          378 YCLCLAIHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       378 ~~l~LvIyaprRg~lEvW~~~~g~~v~~  405 (414)
                         -+++.+..+|.|.||++++|+.+.+
T Consensus       181 ---~lLatgs~Dg~IrIwD~rsg~~v~t  205 (493)
T PTZ00421        181 ---SLLCTTSKDKKLNIIDPRDGTIVSS  205 (493)
T ss_pred             ---CEEEEecCCCEEEEEECCCCcEEEE
Confidence               1567788999999999999987743

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=96.61  E-value=0.066  Score=59.99  Aligned_cols=286  Identities=18%  Similarity=0.162  Sum_probs=142.2

Q ss_pred             CeEEEEEeEEeCCcEEEEEeccccEEEEEecCCcEEeecccCc-cceeEEEEecccCCCCCCCCCCeEEEEeCCe-E--E
Q 015021           77 EYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVHRQLIHP-GRILKLRVRGSRRDLTQDTAEEEVCVVMPGV-L--A  152 (414)
Q Consensus        77 e~ITs~~~lpl~dw~~I~VG~ssG~vrfyte~G~LL~sQ~lh~-~pV~~ik~r~~~~~~~~~~~~eel~Ily~~~-i--v  152 (414)
                      .+||+++=-|.-|  |||||+-+|-|.+|...-+.++.-.=|+ ++|.+|.+|+-..        .-+.+--+.+ +  -
T Consensus       203 s~IT~ieqsPaLD--VVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~--------p~las~~~~G~m~~w  272 (910)
T KOG1539|consen  203 SRITAIEQSPALD--VVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGN--------PLLASGRSNGDMAFW  272 (910)
T ss_pred             cceeEeccCCcce--EEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCC--------eeEEeccCCceEEEE
Confidence            5688887666544  8999999999999996544444445565 9999999998553        2244444422 2  3


Q ss_pred             EEeChhHHHHHHHHH-HhccccccCCCCccCCCcccccccCCccceecccCCCCCc--eeeEEeCCCCCCchhh-hcccc
Q 015021          153 RFDGSEIQKMLQRWF-QDSNSNFWDQKPKQRDSEDLENSYERLPHQLWNVSKYGPC--ADAAITGLMPPPLMEV-QSSQR  228 (414)
Q Consensus       153 ~IdG~sL~~~Lr~c~-~~~~~~~w~~~~~~~~~~~~~~~~~~L~ykKW~l~~~~~i--~Daa~~G~~~p~~~d~-~s~~~  228 (414)
                      -+|+-.|..++++.. ..+...     .-..+.+=+-...+.=+.+.|-++..+-.  -==.=-|...||.+=- +-.++
T Consensus       273 DLe~kkl~~v~~nah~~sv~~~-----~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g  347 (910)
T KOG1539|consen  273 DLEKKKLINVTRNAHYGSVTGA-----TFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQG  347 (910)
T ss_pred             EcCCCeeeeeeeccccCCcccc-----eecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCc
Confidence            466777777777532 000000     00000000000112235577777643321  0001123334444322 11233


Q ss_pred             ceeEEEeCCCceeEEEEeccCC-CcchhhhhhhhhhHHH--HHH-------hhhhh----h-hhhcCCCC---C------
Q 015021          229 YFCAVTIGEDSVISAFRLSEDR-SRSLVGAILSKVVPAT--FST-------ISSLS----K-MIWRSEQS---P------  284 (414)
Q Consensus       229 ~~~~i~vG~~P~la~y~~~~~~-~~s~~~al~S~va~av--~S~-------v~S~a----k-~~W~~~~~---~------  284 (414)
                      ++ ++.+|.++.+=.|-..-++ ++++..-...+-++.+  .+.       +..|+    + .-|..-..   .      
T Consensus       348 ~~-ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~t  426 (910)
T KOG1539|consen  348 HF-ILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYT  426 (910)
T ss_pred             EE-EEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEE
Confidence            33 6777777755444222111 1111110000111111  000       00010    0 01200000   0      


Q ss_pred             -----CCC-CC--CCcccccCCCCccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEE
Q 015021          285 -----KKS-EP--KPQSFARASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFM  356 (414)
Q Consensus       285 -----~~~-e~--kp~~~~~a~pl~~l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi  356 (414)
                           +.. +.  +|.+         +.-..-...++++|++|+++.+.-+-|-|-+++.+.|+...-+= -+-|.=  -
T Consensus       427 W~~~n~~~G~~~L~~~~---------~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~-~~~ah~--~  494 (910)
T KOG1539|consen  427 WNFRNKTSGRHVLDPKR---------FKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFG-DSPAHK--G  494 (910)
T ss_pred             EeccCcccccEEecCcc---------ccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccc-cCcccc--C
Confidence                 000 00  1111         22234678999999999999999999999999999998765441 000000  0


Q ss_pred             EEEecccccccccccCCCCCcceEEEEEEcCCCCeEEEeeCCCCcce
Q 015021          357 EMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEHLAGMADENW  403 (414)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEvW~~~~g~~v  403 (414)
                      ++....           .  +..=-++|-+...|+|..|+...+..+
T Consensus       495 ~V~gla-----------~--D~~n~~~vsa~~~Gilkfw~f~~k~l~  528 (910)
T KOG1539|consen  495 EVTGLA-----------V--DGTNRLLVSAGADGILKFWDFKKKVLK  528 (910)
T ss_pred             ceeEEE-----------e--cCCCceEEEccCcceEEEEecCCccee
Confidence            000000           0  111127899999999999999887744

>PLN00181 protein SPA1-RELATED; Provisional

Probab=96.55  E-value=1.2  Score=49.90  Aligned_cols=93  Identities=18%  Similarity=0.191  Sum_probs=62.1

Q ss_pred             CeeeeccCcceeeeeecceEEEEeecCCCC--Cceeec-c--cCCCCCCCeEEEEEeEEeCCcEEEEEeccccEEEEEe-
Q 015021           33 PNLLCALDMHTIALANRYQTVIINWADPEG--LVAKIR-P--ELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYD-  106 (414)
Q Consensus        33 ~~~~~sp~~~~la~A~~~~~v~~~w~~~~~--~~v~~~-g--~l~~~~~e~ITs~~~lpl~dw~~I~VG~ssG~vrfyt-  106 (414)
                      +.++.+|+|++||.|-...-|- -|+....  ...... +  .+.  ....|+++.|-|.. ...++.|-.+|.|++|+ 
T Consensus       487 ~~i~fs~dg~~latgg~D~~I~-iwd~~~~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~-~~~las~~~Dg~v~lWd~  562 (793)
T PLN00181        487 CAIGFDRDGEFFATAGVNKKIK-IFECESIIKDGRDIHYPVVELA--SRSKLSGICWNSYI-KSQVASSNFEGVVQVWDV  562 (793)
T ss_pred             EEEEECCCCCEEEEEeCCCEEE-EEECCcccccccccccceEEec--ccCceeeEEeccCC-CCEEEEEeCCCeEEEEEC
Confidence            4577889999988887765443 2433210  000000 0  111  13568888888763 45688888999999999 


Q ss_pred             cCCcEEeecccCccceeEEEEec
Q 015021          107 LKGDLVHRQLIHPGRILKLRVRG  129 (414)
Q Consensus       107 e~G~LL~sQ~lh~~pV~~ik~r~  129 (414)
                      ++|.++..+.-|..+|..+.+..
T Consensus       563 ~~~~~~~~~~~H~~~V~~l~~~p  585 (793)
T PLN00181        563 ARSQLVTEMKEHEKRVWSIDYSS  585 (793)
T ss_pred             CCCeEEEEecCCCCCEEEEEEcC
Confidence            57888888788999999999753

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.55  E-value=0.014  Score=61.30  Aligned_cols=85  Identities=24%  Similarity=0.217  Sum_probs=68.4

Q ss_pred             CCccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcc
Q 015021          299 PLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDY  378 (414)
Q Consensus       299 pl~~l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~  378 (414)
                      .+..|..+.--..+++.+|.|++.+..+.+|-|-++|+.++..++++||+.+    .|....-..+             .
T Consensus       238 ~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~----~is~~~f~~d-------------~  300 (456)
T KOG0266|consen  238 NLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSD----GISGLAFSPD-------------G  300 (456)
T ss_pred             EEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCC----ceEEEEECCC-------------C
Confidence            4456888888889999999999999999999999999999999999999999    5544322211             1


Q ss_pred             eEEEEEEcCCCCeEEEeeCCCCcc
Q 015021          379 CLCLAIHAPRKGIIEHLAGMADEN  402 (414)
Q Consensus       379 ~l~LvIyaprRg~lEvW~~~~g~~  402 (414)
                      . +| .-+-.+|.|.|||+.+|++
T Consensus       301 ~-~l-~s~s~d~~i~vwd~~~~~~  322 (456)
T KOG0266|consen  301 N-LL-VSASYDGTIRVWDLETGSK  322 (456)
T ss_pred             C-EE-EEcCCCccEEEEECCCCce
Confidence            1 23 3336699999999999994

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=96.54  E-value=0.0039  Score=65.42  Aligned_cols=82  Identities=18%  Similarity=0.113  Sum_probs=64.0

Q ss_pred             CCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEE
Q 015021          305 DHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAI  384 (414)
Q Consensus       305 D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvI  384 (414)
                      .+.++..++++||+|+|+|..+-.-.|.++|..++.-+..|||+|++=.+=.- .               +..-   =.+
T Consensus       200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~f-r---------------~gt~---~ly  260 (479)
T KOG0299|consen  200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAF-R---------------KGTS---ELY  260 (479)
T ss_pred             cccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeee-e---------------cCcc---cee
Confidence            67789999999999999999999999999999999999999999995433221 1               1000   114


Q ss_pred             EcCCCCeEEEeeCCCCcceee
Q 015021          385 HAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       385 yaprRg~lEvW~~~~g~~v~~  405 (414)
                      -+..++.+.||++++-..|.|
T Consensus       261 s~s~Drsvkvw~~~~~s~vet  281 (479)
T KOG0299|consen  261 SASADRSVKVWSIDQLSYVET  281 (479)
T ss_pred             eeecCCceEEEehhHhHHHHH
Confidence            566788899999988776654

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=96.23  E-value=0.41  Score=53.27  Aligned_cols=86  Identities=20%  Similarity=0.189  Sum_probs=74.6

Q ss_pred             CCccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccce--eeEEEEEecccccccccccCCCCC
Q 015021          299 PLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDAS--CVFMEMLVNKDAATSSAYYAPVKS  376 (414)
Q Consensus       299 pl~~l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq--~~wi~~~~~~~~~~~~~~~~~~k~  376 (414)
                      .+..|.-++|..-++..||.-++.|++..++.|=++.+.+...+.-+.|++.|=  +.|+.-               ++ 
T Consensus       497 l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~---------------~~-  560 (775)
T KOG0319|consen  497 LLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRN---------------GK-  560 (775)
T ss_pred             EEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeC---------------Cc-
Confidence            345799999999999999999999999999999999999999999999999973  445530               12 


Q ss_pred             cceEEEEEEcCCCCeEEEeeCCCCcceee
Q 015021          377 DYCLCLAIHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       377 ~~~l~LvIyaprRg~lEvW~~~~g~~v~~  405 (414)
                           -.|.+-.+|+|++|++++++|+.|
T Consensus       561 -----qliS~~adGliKlWnikt~eC~~t  584 (775)
T KOG0319|consen  561 -----QLISAGADGLIKLWNIKTNECEMT  584 (775)
T ss_pred             -----EEEeccCCCcEEEEeccchhhhhh
Confidence                 458999999999999999999865

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=96.21  E-value=0.034  Score=49.36  Aligned_cols=82  Identities=17%  Similarity=0.137  Sum_probs=58.7

Q ss_pred             CCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEE
Q 015021          305 DHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAI  384 (414)
Q Consensus       305 D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvI  384 (414)
                      ........+..+|+++++++++..|.|.++|+.++..++.++++.+    .+....-.++         +   .   .++
T Consensus       133 ~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~----~i~~~~~~~~---------~---~---~l~  193 (289)
T cd00200         133 GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTG----EVNSVAFSPD---------G---E---KLL  193 (289)
T ss_pred             cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCcc----ccceEEECCC---------c---C---EEE
Confidence            3445678899999999999998899999999999999999987664    2221111110         0   0   233


Q ss_pred             EcCCCCeEEEeeCCCCcceee
Q 015021          385 HAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       385 yaprRg~lEvW~~~~g~~v~~  405 (414)
                      .+-.+|.|.+|+++.++.+.+
T Consensus       194 ~~~~~~~i~i~d~~~~~~~~~  214 (289)
T cd00200         194 SSSSDGTIKLWDLSTGKCLGT  214 (289)
T ss_pred             EecCCCcEEEEECCCCceecc
Confidence            444499999999998877643

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=95.99  E-value=0.035  Score=55.03  Aligned_cols=82  Identities=16%  Similarity=0.237  Sum_probs=62.9

Q ss_pred             eeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEEEcCC
Q 015021          309 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPR  388 (414)
Q Consensus       309 ~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyapr  388 (414)
                      ++.++.++|..+-+..+-.+|-++-+|+.+|.+-|.+||+-|    .+......+..               --+....-
T Consensus       116 eINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtD----YvH~vv~R~~~---------------~qilsG~E  176 (325)
T KOG0649|consen  116 EINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTD----YVHSVVGRNAN---------------GQILSGAE  176 (325)
T ss_pred             ccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcc----eeeeeeecccC---------------cceeecCC
Confidence            567899999976444444889999999999999999999999    77665432211               12355677


Q ss_pred             CCeEEEeeCCCCcceeeccce
Q 015021          389 KGIIEHLAGMADENWTTSLNY  409 (414)
Q Consensus       389 Rg~lEvW~~~~g~~v~~~~~~  409 (414)
                      +|.+.||+++++++|-+---|
T Consensus       177 DGtvRvWd~kt~k~v~~ie~y  197 (325)
T KOG0649|consen  177 DGTVRVWDTKTQKHVSMIEPY  197 (325)
T ss_pred             CccEEEEeccccceeEEeccc
Confidence            999999999999999664433

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=95.94  E-value=0.021  Score=63.08  Aligned_cols=88  Identities=18%  Similarity=0.212  Sum_probs=69.6

Q ss_pred             CCccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcc
Q 015021          299 PLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDY  378 (414)
Q Consensus       299 pl~~l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~  378 (414)
                      |++.|-.+--...++..-|+..|.|..-++-+|=+||+.+|..||++-||+.    =|.+..-.+.|           + 
T Consensus       527 PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~----~V~al~~Sp~G-----------r-  590 (707)
T KOG0263|consen  527 PLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKG----PVTALAFSPCG-----------R-  590 (707)
T ss_pred             chhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCC----ceEEEEEcCCC-----------c-
Confidence            5666666667778899999999999999999999999999999999999888    34443322222           1 


Q ss_pred             eEEEEEEcCCCCeEEEeeCCCCcceee
Q 015021          379 CLCLAIHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       379 ~l~LvIyaprRg~lEvW~~~~g~~v~~  405 (414)
                        ||+ -+--.|+|.+||+.+|+.|.+
T Consensus       591 --~La-Sg~ed~~I~iWDl~~~~~v~~  614 (707)
T KOG0263|consen  591 --YLA-SGDEDGLIKIWDLANGSLVKQ  614 (707)
T ss_pred             --eEe-ecccCCcEEEEEcCCCcchhh
Confidence              444 566799999999999988753

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=95.90  E-value=0.026  Score=58.60  Aligned_cols=96  Identities=19%  Similarity=0.165  Sum_probs=76.1

Q ss_pred             CCCCccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcc-eeEeeecccccceeeEEEEEecccccccccccCCCC
Q 015021          297 ASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQAL-VVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVK  375 (414)
Q Consensus       297 a~pl~~l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~-~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k  375 (414)
                      .+|++...-++.-..+|+.||||+++|..--.|-|.|+|-.+| ++.|-.+|++-    ||....=.+-     |..+. 
T Consensus       147 eTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K----~It~Lawep~-----hl~p~-  216 (480)
T KOG0271|consen  147 ETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKK----WITALAWEPL-----HLVPP-  216 (480)
T ss_pred             CCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCccc----ceeEEeeccc-----ccCCC-
Confidence            3577778888889999999999999999999999999998776 57799999999    9987643221     11111 


Q ss_pred             CcceEEEEEEcCCCCeEEEeeCCCCcceeec
Q 015021          376 SDYCLCLAIHAPRKGIIEHLAGMADENWTTS  406 (414)
Q Consensus       376 ~~~~l~LvIyaprRg~lEvW~~~~g~~v~~~  406 (414)
                        ..  ++-.+.++|.+.||++..|.++-+.
T Consensus       217 --~r--~las~skDg~vrIWd~~~~~~~~~l  243 (480)
T KOG0271|consen  217 --CR--RLASSSKDGSVRIWDTKLGTCVRTL  243 (480)
T ss_pred             --cc--ceecccCCCCEEEEEccCceEEEEe
Confidence              11  5567889999999999999998553

>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length

Probab=95.79  E-value=0.014  Score=38.86  Aligned_cols=27  Identities=37%  Similarity=0.455  Sum_probs=20.7

Q ss_pred             CCeEEEEEeEEeCCcEEEEEeccccEEEEEe
Q 015021           76 SEYITAIEWLVFEEMRALAVGTSRGYFLVYD  106 (414)
Q Consensus        76 ~e~ITs~~~lpl~dw~~I~VG~ssG~vrfyt  106 (414)
                      +|.|+++.   + ....|+|+||.+|||+||
T Consensus         1 gE~i~aia---~-g~~~vavaTS~~~lRifs   27 (27)
T PF12341_consen    1 GEEIEAIA---A-GDSWVAVATSAGYLRIFS   27 (27)
T ss_pred             CceEEEEE---c-cCCEEEEEeCCCeEEecC
Confidence            46677664   3 334799999999999997

The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=95.78  E-value=1.7  Score=48.95  Aligned_cols=112  Identities=14%  Similarity=0.146  Sum_probs=72.4

Q ss_pred             eeeeccCcceeeeeecceEEEEeecCCC----CCc--eeecccCCCCCCCeEEEEEeEEeCCcEEEEEeccccEEEEEec
Q 015021           34 NLLCALDMHTIALANRYQTVIINWADPE----GLV--AKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDL  107 (414)
Q Consensus        34 ~~~~sp~~~~la~A~~~~~v~~~w~~~~----~~~--v~~~g~l~~~~~e~ITs~~~lpl~dw~~I~VG~ssG~vrfyte  107 (414)
                      .|..||+|..+|++.+..+-|  |..++    ++|  +--+-.+..  -+.||++.|.  .|..++++|-.+=.+|+|..
T Consensus       101 ~i~fSPng~~fav~~gn~lqi--w~~P~~~~~~~~pFvl~r~~~g~--fddi~si~Ws--~DSr~l~~gsrD~s~rl~~v  174 (893)
T KOG0291|consen  101 AIKFSPNGKFFAVGCGNLLQI--WHAPGEIKNEFNPFVLHRTYLGH--FDDITSIDWS--DDSRLLVTGSRDLSARLFGV  174 (893)
T ss_pred             eEEECCCCcEEEEEecceeEE--EecCcchhcccCcceEeeeecCC--ccceeEEEec--cCCceEEeccccceEEEEEe
Confidence            467899999999999997776  22222    233  112223322  3568988886  68899999999999999996


Q ss_pred             CCcEE---eecccCccceeEEEEecccCCCCCCCCCCeEEEEeCCeEEEEeChhHH
Q 015021          108 KGDLV---HRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGVLARFDGSEIQ  160 (414)
Q Consensus       108 ~G~LL---~sQ~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ily~~~iv~IdG~sL~  160 (414)
                      ++..=   +--.=|.++|+.--+..         .+.+++.+..++.+..=..++.
T Consensus       175 ~~~k~~~~~~l~gHkd~VvacfF~~---------~~~~l~tvskdG~l~~W~~~~~  221 (893)
T KOG0291|consen  175 DGNKNLFTYALNGHKDYVVACFFGA---------NSLDLYTVSKDGALFVWTCDLR  221 (893)
T ss_pred             ccccccceEeccCCCcceEEEEecc---------CcceEEEEecCceEEEEEecCC
Confidence            54432   12234567777654322         1566888888875544444443

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=94.99  E-value=0.027  Score=60.27  Aligned_cols=77  Identities=18%  Similarity=0.219  Sum_probs=57.8

Q ss_pred             ceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeeccccc-ceeeEEEEEecccccccccccCCCCCcceEEEEEEc
Q 015021          308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRD-ASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA  386 (414)
Q Consensus       308 R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRd-Aq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIya  386 (414)
                      --+..++++||-+++-.+=+.|-|.+||+.+-.+||-+|||-| |.|  |.+   .+++            +   -.--.
T Consensus       510 paCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGasc--Idi---s~dG------------t---klWTG  569 (705)
T KOG0639|consen  510 PACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC--IDI---SKDG------------T---KLWTG  569 (705)
T ss_pred             hhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCcee--EEe---cCCC------------c---eeecC
Confidence            4466789999999888888899999999999999999999999 222  111   1111            0   11224


Q ss_pred             CCCCeEEEeeCCCCccee
Q 015021          387 PRKGIIEHLAGMADENWT  404 (414)
Q Consensus       387 prRg~lEvW~~~~g~~v~  404 (414)
                      ..+..|..||+|.|+++.
T Consensus       570 GlDntvRcWDlregrqlq  587 (705)
T KOG0639|consen  570 GLDNTVRCWDLREGRQLQ  587 (705)
T ss_pred             CCccceeehhhhhhhhhh
Confidence            558899999999999874

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=94.81  E-value=0.097  Score=53.01  Aligned_cols=79  Identities=18%  Similarity=0.034  Sum_probs=65.5

Q ss_pred             eeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEEEcCCC
Q 015021          310 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRK  389 (414)
Q Consensus       310 ~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprR  389 (414)
                      +-.+.-.++++-+.++-.+-||..+|+++|..+|=.||+-+    ++....+              .++.+.||.-+.-+
T Consensus        93 VM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~----~vNs~~p--------------~rrg~~lv~SgsdD  154 (338)
T KOG0265|consen   93 VMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTS----FVNSLDP--------------SRRGPQLVCSGSDD  154 (338)
T ss_pred             eEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccc----eeeecCc--------------cccCCeEEEecCCC
Confidence            33456678888888888889999999999999999999999    8877643              23566899999999


Q ss_pred             CeEEEeeCCCCcceeec
Q 015021          390 GIIEHLAGMADENWTTS  406 (414)
Q Consensus       390 g~lEvW~~~~g~~v~~~  406 (414)
                      |.+.+||||..+.+-|-
T Consensus       155 ~t~kl~D~R~k~~~~t~  171 (338)
T KOG0265|consen  155 GTLKLWDIRKKEAIKTF  171 (338)
T ss_pred             ceEEEEeecccchhhcc
Confidence            99999999977776553

>KOG2727 consensus Rab3 GTPase-activating protein, non-catalytic subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.67  E-value=0.039  Score=62.46  Aligned_cols=84  Identities=45%  Similarity=0.833  Sum_probs=72.5

Q ss_pred             CCeEEEEeCCeEEEEeChhHHHHHHHHHHhccccccCCCCccCCCcccccccCCccceecccCCCCCceeeEEeCCCC--
Q 015021          140 EEEVCVVMPGVLARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDLENSYERLPHQLWNVSKYGPCADAAITGLMP--  217 (414)
Q Consensus       140 ~eel~Ily~~~iv~IdG~sL~~~Lr~c~~~~~~~~w~~~~~~~~~~~~~~~~~~L~ykKW~l~~~~~i~Daa~~G~~~--  217 (414)
                      -++.+++-|+...+.++...+.+.+.+..+.++..|.++-..++..........|++..|+.-+..++.|..+.+++.  
T Consensus       150 yp~~~~~I~g~sl~~~L~ncq~~Vqkaa~Eknsn~~~~~~~~qk~~l~qdi~~~I~hai~~~~~~ppt~Dq~vtas~~~g  229 (1244)
T KOG2727|consen  150 YPEICIVIPGVSLRFDLSNCQSMVQKAAQEKNSNFWDQKNRKQKAELTQDIYQRIPHAIWNVNKNPPTVDQTVTASMPPG  229 (1244)
T ss_pred             ecceEEEECCchhhhhHHHHHHHHHHHHHhccCCcCCccchhhhhhcccchhhccchheeecccCCccHHHhhhcccCch
Confidence            456899999999999999999999999999999999999988887665556788999999999888889988887664  


Q ss_pred             --------CCchhh
Q 015021          218 --------PPLMEV  223 (414)
Q Consensus       218 --------p~~~d~  223 (414)
                              ||.+++
T Consensus       230 y~a~~k~SpPrySq  243 (1244)
T KOG2727|consen  230 YLALQKPSPPRYSQ  243 (1244)
T ss_pred             hhhhccCCCcceee
Confidence                    677777

>PTZ00421 coronin; Provisional

Probab=94.50  E-value=0.26  Score=52.86  Aligned_cols=81  Identities=16%  Similarity=0.182  Sum_probs=59.4

Q ss_pred             ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccc---eeeEEEEEecccccccccccCCCCCcce
Q 015021          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA---SCVFMEMLVNKDAATSSAYYAPVKSDYC  379 (414)
Q Consensus       303 l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdA---q~~wi~~~~~~~~~~~~~~~~~~k~~~~  379 (414)
                      +..+...+.+|+.+|+|+++|++...|.|-++|+.++..++-++|+..+   .|.|..     +              ..
T Consensus       164 l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~-----~--------------~~  224 (493)
T PTZ00421        164 IKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAK-----R--------------KD  224 (493)
T ss_pred             EcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcC-----C--------------CC
Confidence            4445566889999999999999999999999999999999999988764   355542     0              01


Q ss_pred             EEEEEE--cCCCCeEEEeeCCCCcc
Q 015021          380 LCLAIH--APRKGIIEHLAGMADEN  402 (414)
Q Consensus       380 l~LvIy--aprRg~lEvW~~~~g~~  402 (414)
                      +++..-  .-.+|.|.+|++++..+
T Consensus       225 ~ivt~G~s~s~Dr~VklWDlr~~~~  249 (493)
T PTZ00421        225 LIITLGCSKSQQRQIMLWDTRKMAS  249 (493)
T ss_pred             eEEEEecCCCCCCeEEEEeCCCCCC
Confidence            122221  13478899999987653

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=94.47  E-value=0.28  Score=48.89  Aligned_cols=87  Identities=15%  Similarity=0.095  Sum_probs=64.4

Q ss_pred             CCccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcc-eeEeeecccccceeeEEEEEecccccccccccCCCCCc
Q 015021          299 PLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQAL-VVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSD  377 (414)
Q Consensus       299 pl~~l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~-~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~  377 (414)
                      |+.-|.-..|++.++-+||++++.|++.+.-.|.++.+.+. ..=+..+|+-.    |+.--.=..           ...
T Consensus       207 P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~r----WvWdc~FS~-----------dg~  271 (311)
T KOG0315|consen  207 PVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQR----WVWDCAFSA-----------DGE  271 (311)
T ss_pred             EhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCc----eEEeeeecc-----------Ccc
Confidence            44447788899999999999999999999999999999987 33345555543    876332111           111


Q ss_pred             ceEEEEEEcCCCCeEEEeeCCCCccee
Q 015021          378 YCLCLAIHAPRKGIIEHLAGMADENWT  404 (414)
Q Consensus       378 ~~l~LvIyaprRg~lEvW~~~~g~~v~  404 (414)
                         |||- |..|+...+|++.+|+.|.
T Consensus       272 ---YlvT-assd~~~rlW~~~~~k~v~  294 (311)
T KOG0315|consen  272 ---YLVT-ASSDHTARLWDLSAGKEVR  294 (311)
T ss_pred             ---EEEe-cCCCCceeecccccCceee
Confidence               6655 5556999999999999874

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=94.23  E-value=0.26  Score=49.89  Aligned_cols=82  Identities=20%  Similarity=0.246  Sum_probs=63.2

Q ss_pred             ceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEEEcC
Q 015021          308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP  387 (414)
Q Consensus       308 R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap  387 (414)
                      -+-..|.-||+|++..++++.+-++|+|.-+|.++.=+-||+.++--=+++.=..|          ++      +|+-.-
T Consensus       188 ~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPd----------s~------Fvl~gs  251 (311)
T KOG1446|consen  188 AEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPD----------SK------FVLSGS  251 (311)
T ss_pred             cceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCC----------Cc------EEEEec
Confidence            34577899999999999999999999999999999999999887611122211111          11      556666


Q ss_pred             CCCeEEEeeCCCCcceee
Q 015021          388 RKGIIEHLAGMADENWTT  405 (414)
Q Consensus       388 rRg~lEvW~~~~g~~v~~  405 (414)
                      -+|.|-||++.+|++|+.
T Consensus       252 ~dg~i~vw~~~tg~~v~~  269 (311)
T KOG1446|consen  252 DDGTIHVWNLETGKKVAV  269 (311)
T ss_pred             CCCcEEEEEcCCCcEeeE
Confidence            789999999999999964

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=94.12  E-value=0.29  Score=49.26  Aligned_cols=88  Identities=11%  Similarity=0.056  Sum_probs=74.1

Q ss_pred             ccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeeccc-ccceeeEEEEEecccccccccccCCCCCcce
Q 015021          301 TCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGY-RDASCVFMEMLVNKDAATSSAYYAPVKSDYC  379 (414)
Q Consensus       301 ~~l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGy-RdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~  379 (414)
                      .-|.-+.+...+++++|+++-++....+--|.|+|+-..+...|=.+. ||    |+....-.+          ++..  
T Consensus        99 ~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~----WVscvrfsP----------~~~~--  162 (315)
T KOG0279|consen   99 RRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHRE----WVSCVRFSP----------NESN--  162 (315)
T ss_pred             EEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcC----cEEEEEEcC----------CCCC--
Confidence            347788899999999999999999999999999999999999999998 99    998764322          2111  


Q ss_pred             EEEEEEcCCCCeEEEeeCCCCcceee
Q 015021          380 LCLAIHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       380 l~LvIyaprRg~lEvW~~~~g~~v~~  405 (414)
                       ..++-+.-++.|+||++++.+.-++
T Consensus       163 -p~Ivs~s~DktvKvWnl~~~~l~~~  187 (315)
T KOG0279|consen  163 -PIIVSASWDKTVKVWNLRNCQLRTT  187 (315)
T ss_pred             -cEEEEccCCceEEEEccCCcchhhc
Confidence             3778999999999999999887654

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=94.10  E-value=0.18  Score=49.88  Aligned_cols=84  Identities=12%  Similarity=0.031  Sum_probs=64.8

Q ss_pred             CCCCccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCC
Q 015021          297 ASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKS  376 (414)
Q Consensus       297 a~pl~~l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~  376 (414)
                      .+.+....-..++...+.++.|+.-+|..-..--|.+||+++|.++|=|.|+ +||+-=+...|+.              
T Consensus        49 g~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH-~aqVNtV~fNees--------------  113 (307)
T KOG0316|consen   49 GALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGH-LAQVNTVRFNEES--------------  113 (307)
T ss_pred             cceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccc-cceeeEEEecCcc--------------
Confidence            3455668888999999999999977777777788999999999999999998 5677666654432              


Q ss_pred             cceEEEEEEcCCCCeEEEeeCCC
Q 015021          377 DYCLCLAIHAPRKGIIEHLAGMA  399 (414)
Q Consensus       377 ~~~l~LvIyaprRg~lEvW~~~~  399 (414)
                          -.|..+.-+..+.+|+.|.
T Consensus       114 ----SVv~SgsfD~s~r~wDCRS  132 (307)
T KOG0316|consen  114 ----SVVASGSFDSSVRLWDCRS  132 (307)
T ss_pred             ----eEEEeccccceeEEEEccc
Confidence                1455566677777777664

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=93.94  E-value=0.18  Score=51.55  Aligned_cols=87  Identities=16%  Similarity=0.163  Sum_probs=66.5

Q ss_pred             ccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceE
Q 015021          301 TCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCL  380 (414)
Q Consensus       301 ~~l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l  380 (414)
                      ++-.|..- .+++..+|+|.+.|+.=..|||.++|..+-.+-||.-||-.+=+.=-.    ..++           +   
T Consensus        18 ~~tld~~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~W----S~dg-----------r---   78 (405)
T KOG1273|consen   18 THTLDNPL-AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCW----SRDG-----------R---   78 (405)
T ss_pred             ceeccCCc-cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEe----cCCC-----------C---
Confidence            34344444 899999999999999999999999999999999999887664332211    1111           1   


Q ss_pred             EEEEEcCCCCeEEEeeCCCCcceeeccceeee
Q 015021          381 CLAIHAPRKGIIEHLAGMADENWTTSLNYSVR  412 (414)
Q Consensus       381 ~LvIyaprRg~lEvW~~~~g~~v~~~~~~~~~  412 (414)
                       +..-+.|+..+..|++..|-++     |.+|
T Consensus        79 -~LltsS~D~si~lwDl~~gs~l-----~rir  104 (405)
T KOG1273|consen   79 -KLLTSSRDWSIKLWDLLKGSPL-----KRIR  104 (405)
T ss_pred             -EeeeecCCceeEEEeccCCCce-----eEEE
Confidence             4567899999999999999877     6665

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=93.84  E-value=0.54  Score=43.74  Aligned_cols=76  Identities=16%  Similarity=0.138  Sum_probs=50.0

Q ss_pred             eeEEEECCCCCEEEEE-cCCCcEEEEEcCcceeEeeec-ccccceeeEEEEEecccccccccccCCCCCcceEEEEEEcC
Q 015021          310 GERLTLSPSGSLAAIT-DSLGRILLLDTQALVVVRLWK-GYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP  387 (414)
Q Consensus       310 ~~~i~~sP~~~laa~t-D~lGRV~L~D~~~~~vvrmwK-GyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap  387 (414)
                      ...|..+|+++++.++ ...++|.++|+.++.+++... |..--.+.|      .+.         ++     +|++-+.
T Consensus       209 ~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~------~~~---------g~-----~l~~~~~  268 (300)
T TIGR03866       209 PVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAF------TPD---------EK-----YLLTTNG  268 (300)
T ss_pred             ccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEE------CCC---------CC-----EEEEEcC
Confidence            3468899999875543 456799999999999887643 321111111      111         11     3444456


Q ss_pred             CCCeEEEeeCCCCcceee
Q 015021          388 RKGIIEHLAGMADENWTT  405 (414)
Q Consensus       388 rRg~lEvW~~~~g~~v~~  405 (414)
                      ..|.|.||++++|+++.+
T Consensus       269 ~~~~i~v~d~~~~~~~~~  286 (300)
T TIGR03866       269 VSNDVSVIDVAALKVIKS  286 (300)
T ss_pred             CCCeEEEEECCCCcEEEE
Confidence            789999999999998754

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=93.82  E-value=0.49  Score=44.02  Aligned_cols=75  Identities=15%  Similarity=0.127  Sum_probs=51.0

Q ss_pred             eEEEECCCCCEE-EEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEEEcCCC
Q 015021          311 ERLTLSPSGSLA-AITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRK  389 (414)
Q Consensus       311 ~~i~~sP~~~la-a~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprR  389 (414)
                      ..+.++|+|+.+ ++....++|.++|+.++.+++.+....+.  ..+.+.   ++         +  +   +|++-....
T Consensus        34 ~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~--~~~~~~---~~---------g--~---~l~~~~~~~   94 (300)
T TIGR03866        34 RGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDP--ELFALH---PN---------G--K---ILYIANEDD   94 (300)
T ss_pred             CceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCc--cEEEEC---CC---------C--C---EEEEEcCCC
Confidence            468999999865 55677899999999999998877653331  122111   10         1  1   355555677


Q ss_pred             CeEEEeeCCCCccee
Q 015021          390 GIIEHLAGMADENWT  404 (414)
Q Consensus       390 g~lEvW~~~~g~~v~  404 (414)
                      +.|.+|++++++.+.
T Consensus        95 ~~l~~~d~~~~~~~~  109 (300)
T TIGR03866        95 NLVTVIDIETRKVLA  109 (300)
T ss_pred             CeEEEEECCCCeEEe
Confidence            899999999877653

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PTZ00420 coronin; Provisional

Probab=93.79  E-value=0.47  Score=51.96  Aligned_cols=87  Identities=10%  Similarity=-0.059  Sum_probs=58.6

Q ss_pred             CCccccCCCceeeEEEECCCCCE-EEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCc
Q 015021          299 PLTCLKDHPRKGERLTLSPSGSL-AAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSD  377 (414)
Q Consensus       299 pl~~l~D~~R~~~~i~~sP~~~l-aa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~  377 (414)
                      |+..+..+.+.+..|+.+|++.. +|++...|.|.|+|+.++..+..++.. + .+.-+...   .++            
T Consensus       117 p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~-~-~V~Slsws---pdG------------  179 (568)
T PTZ00420        117 PQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMP-K-KLSSLKWN---IKG------------  179 (568)
T ss_pred             ceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecC-C-cEEEEEEC---CCC------------
Confidence            33346667788999999999964 566778899999999999877766532 1 22111111   111            


Q ss_pred             ceEEEEEEcCCCCeEEEeeCCCCcceee
Q 015021          378 YCLCLAIHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       378 ~~l~LvIyaprRg~lEvW~~~~g~~v~~  405 (414)
                       .  +++-+-++|.|.||++++|+.+.+
T Consensus       180 -~--lLat~s~D~~IrIwD~Rsg~~i~t  204 (568)
T PTZ00420        180 -N--LLSGTCVGKHMHIIDPRKQEIASS  204 (568)
T ss_pred             -C--EEEEEecCCEEEEEECCCCcEEEE
Confidence             1  334456788999999999887743

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=93.72  E-value=5.8  Score=41.48  Aligned_cols=92  Identities=7%  Similarity=-0.102  Sum_probs=61.2

Q ss_pred             eeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccc--eeeEEEEEecccccccccccCCCCCcceEEEEEEc
Q 015021          309 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA--SCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA  386 (414)
Q Consensus       309 ~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdA--q~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIya  386 (414)
                      -...|.+.-||++.|..++.=+|-++=++++....+..++--.  -.+|..-.+..+    .....+.. ..+.+| .-+
T Consensus       237 wvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~----i~~at~~~-~~~~~l-~s~  310 (406)
T KOG0295|consen  237 WVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPS----ISEATGST-NGGQVL-GSG  310 (406)
T ss_pred             hEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcc----hhhccCCC-CCccEE-Eee
Confidence            5677889999999999999999999999999666665554331  123443222111    00011111 122244 568


Q ss_pred             CCCCeEEEeeCCCCcceeec
Q 015021          387 PRKGIIEHLAGMADENWTTS  406 (414)
Q Consensus       387 prRg~lEvW~~~~g~~v~~~  406 (414)
                      .|+++|++|+|++|.|+-|-
T Consensus       311 SrDktIk~wdv~tg~cL~tL  330 (406)
T KOG0295|consen  311 SRDKTIKIWDVSTGMCLFTL  330 (406)
T ss_pred             cccceEEEEeccCCeEEEEE
Confidence            89999999999999998663

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=92.98  E-value=0.18  Score=33.93  Aligned_cols=36  Identities=25%  Similarity=0.389  Sum_probs=32.7

Q ss_pred             CccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEE
Q 015021          300 LTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLD  335 (414)
Q Consensus       300 l~~l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D  335 (414)
                      +..|......+.+|+.+|+++++|++...|.|.++|
T Consensus         4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            456788889999999999999999999999999987

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PTZ00420 coronin; Provisional

Probab=92.96  E-value=0.99  Score=49.47  Aligned_cols=50  Identities=12%  Similarity=0.143  Sum_probs=42.4

Q ss_pred             ceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccc---eeeEEE
Q 015021          308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA---SCVFME  357 (414)
Q Consensus       308 R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdA---q~~wi~  357 (414)
                      ..+.+++.+|+|+++|++-..|.|.|+|+.++.+++.++||...   .+-|+.
T Consensus       168 ~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~  220 (568)
T PTZ00420        168 KKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWID  220 (568)
T ss_pred             CcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEee
Confidence            35789999999999999888899999999999999999998763   444653

>PLN00181 protein SPA1-RELATED; Provisional

Probab=92.73  E-value=0.66  Score=51.92  Aligned_cols=79  Identities=14%  Similarity=0.024  Sum_probs=57.9

Q ss_pred             eeeEEEECCC-CCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEEEcC
Q 015021          309 KGERLTLSPS-GSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP  387 (414)
Q Consensus       309 ~~~~i~~sP~-~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap  387 (414)
                      ...+++.+|. ++++|+++..|.|.|||+.++..++.++|+.+.    |....-.+          .  +.  -+++-+.
T Consensus       534 ~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~----V~~l~~~p----------~--~~--~~L~Sgs  595 (793)
T PLN00181        534 KLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKR----VWSIDYSS----------A--DP--TLLASGS  595 (793)
T ss_pred             ceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCC----EEEEEEcC----------C--CC--CEEEEEc
Confidence            4567777765 689999999999999999999999999999873    22211100          0  00  1456667


Q ss_pred             CCCeEEEeeCCCCcceee
Q 015021          388 RKGIIEHLAGMADENWTT  405 (414)
Q Consensus       388 rRg~lEvW~~~~g~~v~~  405 (414)
                      .+|.|.+|++++++++.+
T Consensus       596 ~Dg~v~iWd~~~~~~~~~  613 (793)
T PLN00181        596 DDGSVKLWSINQGVSIGT  613 (793)
T ss_pred             CCCEEEEEECCCCcEEEE
Confidence            799999999999887643

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=91.63  E-value=1.3  Score=46.82  Aligned_cols=70  Identities=19%  Similarity=0.301  Sum_probs=50.1

Q ss_pred             EEEEeEEe----CCcEEEEEeccccEEEEEecCC------cEEeecccCccceeEEEEecccCCCCCCCCCCeEEEEeCC
Q 015021           80 TAIEWLVF----EEMRALAVGTSRGYFLVYDLKG------DLVHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPG  149 (414)
Q Consensus        80 Ts~~~lpl----~dw~~I~VG~ssG~vrfyte~G------~LL~sQ~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ily~~  149 (414)
                      -++++-++    .+.-.|+||--+|++|+|..++      +||+...+ ..||++|.+..=..    ......|.||.|.
T Consensus        23 ~~l~v~~~~~~~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l-~~PILqv~~G~F~s----~~~~~~LaVLhP~   97 (418)
T PF14727_consen   23 GSLCVGNLDNSPSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQL-KDPILQVECGKFVS----GSEDLQLAVLHPR   97 (418)
T ss_pred             ceEEEEcccCCCCCccEEEEeccccEEEEEccCCCCCCCccEEEEEec-CCcEEEEEeccccC----CCCcceEEEecCC
Confidence            34545555    2446999999999999999533      47777666 58999999876321    1235689999999


Q ss_pred             eEEEE
Q 015021          150 VLARF  154 (414)
Q Consensus       150 ~iv~I  154 (414)
                      .++..
T Consensus        98 kl~vY  102 (418)
T PF14727_consen   98 KLSVY  102 (418)
T ss_pred             EEEEE
Confidence            86543

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=91.16  E-value=0.73  Score=50.87  Aligned_cols=80  Identities=15%  Similarity=0.150  Sum_probs=66.7

Q ss_pred             CceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEEEc
Q 015021          307 PRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA  386 (414)
Q Consensus       307 ~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIya  386 (414)
                      +-.+-+++.-|+|..++..+.-+-+.|+|-.++.=+-=.+||||    -+.+....+++           .    =++.+
T Consensus       171 k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTd----NVr~ll~~dDG-----------t----~~ls~  231 (735)
T KOG0308|consen  171 KDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTD----NVRVLLVNDDG-----------T----RLLSA  231 (735)
T ss_pred             ccceeeeecCCcceEEEecCcccceEEeccccccceeeeecccc----ceEEEEEcCCC-----------C----eEeec
Confidence            34467889999999999999999999999998875555669999    88777655544           1    24789


Q ss_pred             CCCCeEEEeeCCCCcceee
Q 015021          387 PRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       387 prRg~lEvW~~~~g~~v~~  405 (414)
                      ..+|.|.+|++.+-+|++|
T Consensus       232 sSDgtIrlWdLgqQrCl~T  250 (735)
T KOG0308|consen  232 SSDGTIRLWDLGQQRCLAT  250 (735)
T ss_pred             CCCceEEeeeccccceeee
Confidence            9999999999999999998

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=91.03  E-value=0.7  Score=52.53  Aligned_cols=108  Identities=19%  Similarity=0.131  Sum_probs=65.7

Q ss_pred             eeeeeeecccc-----------cccCCCCCcccCCCeee---eccCcceeee-eecceEEE------EeecCCCCCceee
Q 015021            9 EVGSIACTDLS-----------DLGAGKEGWLVNDPNLL---CALDMHTIAL-ANRYQTVI------INWADPEGLVAKI   67 (414)
Q Consensus         9 ~~~~~~~~~~~-----------~~g~~~~~WL~~~~~~~---~sp~~~~la~-A~~~~~v~------~~w~~~~~~~v~~   67 (414)
                      ++|||-|-+-+           +.|.-+..=+.|.-.+-   +|-.|-++|- +-++|...      ..|++.    -.|
T Consensus       442 ~vGiI~t~~~e~~~ssIdVeFHD~sihr~~H~~d~~~y~lA~ls~~g~llAsp~s~sk~~sil~~~h~~w~s~----seW  517 (933)
T KOG1274|consen  442 EVGIIRTVVNEANDSSIDVEFHDTSIHRAYHFSDLFGYELADLSEKGTLLASPESESKLGSILYRAHFSWDSH----SEW  517 (933)
T ss_pred             ccceEEEEeccCcCceEEEEEeccCccceeeeeccccceeeeccccceEEecccccCCcceEEEEcccCcccc----cce
Confidence            57888853322           23433555554422222   3334433332 33444444      236553    357


Q ss_pred             cccCCCCCCCeEEEEEeEEeCCcEEEEEeccccEEEEEecCCcEEeecccCccceeEEEE
Q 015021           68 RPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRV  127 (414)
Q Consensus        68 ~g~l~~~~~e~ITs~~~lpl~dw~~I~VG~ssG~vrfyte~G~LL~sQ~lh~~pV~~ik~  127 (414)
                      .=.|..  +|.|++|++-+.    .|+|+|+.||||+||..|.-..-- =|+.||+...+
T Consensus       518 tm~lP~--~E~~~~V~~t~~----~Vav~TS~~~lRvFt~gGvq~~I~-t~~gP~vtaag  570 (933)
T KOG1274|consen  518 TMILPL--QESIEAVAATSG----WVAVATSLGYLRVFTIGGVQREIF-TLPGPVVTAAG  570 (933)
T ss_pred             eeecCC--CCceeEEEccCc----EEEEEeccceEEEEEecceeeeEe-ecccceEEeec
Confidence            767744  488999977544    799999999999999999754332 45789998873

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=90.63  E-value=0.93  Score=47.84  Aligned_cols=76  Identities=17%  Similarity=0.147  Sum_probs=58.9

Q ss_pred             CceeeEEEECCCCCEEEEE--cCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEE
Q 015021          307 PRKGERLTLSPSGSLAAIT--DSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAI  384 (414)
Q Consensus       307 ~R~~~~i~~sP~~~laa~t--D~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvI  384 (414)
                      .+...+|+--|||.++++.  |++|||  +|+.+|.-|-...||-+.=++ +..   .+.               -|.+.
T Consensus       303 s~~v~~iaf~~DGSL~~tGGlD~~~Rv--WDlRtgr~im~L~gH~k~I~~-V~f---sPN---------------Gy~lA  361 (459)
T KOG0272|consen  303 SKGVFSIAFQPDGSLAATGGLDSLGRV--WDLRTGRCIMFLAGHIKEILS-VAF---SPN---------------GYHLA  361 (459)
T ss_pred             ccccceeEecCCCceeeccCccchhhe--eecccCcEEEEecccccceee-EeE---CCC---------------ceEEe
Confidence            4667789999999999994  999996  899999999999998772111 111   111               17888


Q ss_pred             EcCCCCeEEEeeCCCCcce
Q 015021          385 HAPRKGIIEHLAGMADENW  403 (414)
Q Consensus       385 yaprRg~lEvW~~~~g~~v  403 (414)
                      -...+++..||+++--..+
T Consensus       362 Tgs~Dnt~kVWDLR~r~~l  380 (459)
T KOG0272|consen  362 TGSSDNTCKVWDLRMRSEL  380 (459)
T ss_pred             ecCCCCcEEEeeecccccc
Confidence            8899999999999876665

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=90.55  E-value=0.44  Score=50.09  Aligned_cols=79  Identities=16%  Similarity=0.120  Sum_probs=62.4

Q ss_pred             eeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccc--cceeeEEEEEecccccccccccCCCCCcceEEEEEEc
Q 015021          309 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYR--DASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA  386 (414)
Q Consensus       309 ~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyR--dAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIya  386 (414)
                      .+..++.||+-..++.+..+|+|.++|.....-=|+..|+=  =-.|.|..                .|     -|+.-+
T Consensus       182 aIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP----------------~k-----gLiasg  240 (464)
T KOG0284|consen  182 AIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP----------------TK-----GLIASG  240 (464)
T ss_pred             hhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCC----------------cc-----ceeEEc
Confidence            45678999988888888889999999999988888887762  11223332                12     488999


Q ss_pred             CCCCeEEEeeCCCCcceeeccc
Q 015021          387 PRKGIIEHLAGMADENWTTSLN  408 (414)
Q Consensus       387 prRg~lEvW~~~~g~~v~~~~~  408 (414)
                      .++..|++||.++|+|++|...
T Consensus       241 skDnlVKlWDprSg~cl~tlh~  262 (464)
T KOG0284|consen  241 SKDNLVKLWDPRSGSCLATLHG  262 (464)
T ss_pred             cCCceeEeecCCCcchhhhhhh
Confidence            9999999999999999998753

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=89.89  E-value=1.9  Score=44.56  Aligned_cols=50  Identities=18%  Similarity=0.180  Sum_probs=36.5

Q ss_pred             ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccce
Q 015021          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDAS  352 (414)
Q Consensus       303 l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq  352 (414)
                      ++-...--..+..+|||+++-++...|.|.+||+.++.+++-.|--.++.
T Consensus        32 i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~   81 (369)
T PF02239_consen   32 IPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPR   81 (369)
T ss_dssp             EE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEE
T ss_pred             EcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcc
Confidence            33333333456789999999999889999999999999999888776653

...

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=89.83  E-value=3.6  Score=43.97  Aligned_cols=203  Identities=18%  Similarity=0.187  Sum_probs=114.4

Q ss_pred             CCcEEEEEeccccEEEEEe-cCCcEEeecccCccceeEEEEecccCCCCCCCCCCeEEEEeCCe-EEEEeChhHHHHHHH
Q 015021           88 EEMRALAVGTSRGYFLVYD-LKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGV-LARFDGSEIQKMLQR  165 (414)
Q Consensus        88 ~dw~~I~VG~ssG~vrfyt-e~G~LL~sQ~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ily~~~-iv~IdG~sL~~~Lr~  165 (414)
                      |+-.+++.|+-+|-+.... -+|.||-.-+-|.-+|.+|++-.-..         -+.=--.++ |..-+-.+|.+.   
T Consensus        91 n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs---------~iiTgskDg~V~vW~l~~lv~a---  158 (476)
T KOG0646|consen   91 NLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGS---------HIITGSKDGAVLVWLLTDLVSA---  158 (476)
T ss_pred             CCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCc---------EEEecCCCccEEEEEEEeeccc---
Confidence            6678999999999999999 59999988899999999999654322         111111111 211111222211   


Q ss_pred             HHHhccccccCCCCccCCCcccccccCCccceecccCCCCCceeeEE-eCCCCCCchhhhccccceeEEEeCCCceeEEE
Q 015021          166 WFQDSNSNFWDQKPKQRDSEDLENSYERLPHQLWNVSKYGPCADAAI-TGLMPPPLMEVQSSQRYFCAVTIGEDSVISAF  244 (414)
Q Consensus       166 c~~~~~~~~w~~~~~~~~~~~~~~~~~~L~ykKW~l~~~~~i~Daa~-~G~~~p~~~d~~s~~~~~~~i~vG~~P~la~y  244 (414)
                                          +  +...+.|+.+|+= ..-+|.|.-| .|...            .++++++.+-.+-.|
T Consensus       159 --------------------~--~~~~~~p~~~f~~-HtlsITDl~ig~Gg~~------------~rl~TaS~D~t~k~w  203 (476)
T KOG0646|consen  159 --------------------D--NDHSVKPLHIFSD-HTLSITDLQIGSGGTN------------ARLYTASEDRTIKLW  203 (476)
T ss_pred             --------------------c--cCCCccceeeecc-CcceeEEEEecCCCcc------------ceEEEecCCceEEEE
Confidence                                1  1124466667752 3347888877 33211            125677777666666


Q ss_pred             EeccCCCcchhhhhhhhhhHHHHHHhhhhh--------------hhhhcCC--C-CCCCCCCCCccc-ccCCCCccccCC
Q 015021          245 RLSEDRSRSLVGAILSKVVPATFSTISSLS--------------KMIWRSE--Q-SPKKSEPKPQSF-ARASPLTCLKDH  306 (414)
Q Consensus       245 ~~~~~~~~s~~~al~S~va~av~S~v~S~a--------------k~~W~~~--~-~~~~~e~kp~~~-~~a~pl~~l~D~  306 (414)
                      -++.+.   +    +-.++.-+  .+++++              +..|-.+  + +.+..-.+.+.. +--+....|.-+
T Consensus       204 dlS~g~---L----Llti~fp~--si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh  274 (476)
T KOG0646|consen  204 DLSLGV---L----LLTITFPS--SIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGH  274 (476)
T ss_pred             Eeccce---e----eEEEecCC--cceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccc
Confidence            655442   1    11110000  011110              0011000  0 111110111110 112233446666


Q ss_pred             Cc--eeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeec
Q 015021          307 PR--KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWK  346 (414)
Q Consensus       307 ~R--~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwK  346 (414)
                      ..  .+.+++++-||++.+..|-.|.|.++|+...++||.--
T Consensus       275 ~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~  316 (476)
T KOG0646|consen  275 ENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ  316 (476)
T ss_pred             cCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence            55  79999999999999999999999999999999999643

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=88.95  E-value=2.2  Score=43.10  Aligned_cols=78  Identities=8%  Similarity=0.053  Sum_probs=66.6

Q ss_pred             CceeeEEEECCC--CCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEE
Q 015021          307 PRKGERLTLSPS--GSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAI  384 (414)
Q Consensus       307 ~R~~~~i~~sP~--~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvI  384 (414)
                      +--..++..+|+  +-+++.+-.++-|=++|+.+-++..++=|+-.    -+...+..++|               .|.+
T Consensus       148 ~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~----~v~t~~vSpDG---------------slca  208 (315)
T KOG0279|consen  148 REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSG----YVNTVTVSPDG---------------SLCA  208 (315)
T ss_pred             cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccc----cEEEEEECCCC---------------CEEe
Confidence            566899999999  57888899999999999999999999999766    66666555444               3789


Q ss_pred             EcCCCCeEEEeeCCCCcce
Q 015021          385 HAPRKGIIEHLAGMADENW  403 (414)
Q Consensus       385 yaprRg~lEvW~~~~g~~v  403 (414)
                      |..++|.+-+|++..|+++
T Consensus       209 sGgkdg~~~LwdL~~~k~l  227 (315)
T KOG0279|consen  209 SGGKDGEAMLWDLNEGKNL  227 (315)
T ss_pred             cCCCCceEEEEEccCCcee
Confidence            9999999999999999998

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=88.75  E-value=0.63  Score=46.74  Aligned_cols=43  Identities=30%  Similarity=0.428  Sum_probs=39.5

Q ss_pred             cCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeec
Q 015021          304 KDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWK  346 (414)
Q Consensus       304 ~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwK  346 (414)
                      .+.+-.+-++.+||+|++.|+...-|+|.|+++-+....|-||
T Consensus       226 ~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~  268 (282)
T PF15492_consen  226 GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK  268 (282)
T ss_pred             ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence            4556678899999999999999999999999999999999996

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.54  E-value=1.5  Score=44.05  Aligned_cols=88  Identities=15%  Similarity=0.109  Sum_probs=67.3

Q ss_pred             CCCCccccCCCceeeEEEECCCCC-EEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCC
Q 015021          297 ASPLTCLKDHPRKGERLTLSPSGS-LAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVK  375 (414)
Q Consensus       297 a~pl~~l~D~~R~~~~i~~sP~~~-laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k  375 (414)
                      +.|+.++.+++|++.++--.+..+ -..++.=+|.|=|+|-.+..-|+-++|+++.=.+=.  ..+.             
T Consensus        94 s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~--~sp~-------------  158 (311)
T KOG0277|consen   94 SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAA--FSPH-------------  158 (311)
T ss_pred             CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEe--cCCC-------------
Confidence            458899999999999999999875 445567789999999999999999999998422111  1000             


Q ss_pred             CcceEEEEEEcCCCCeEEEeeCCC-Ccc
Q 015021          376 SDYCLCLAIHAPRKGIIEHLAGMA-DEN  402 (414)
Q Consensus       376 ~~~~l~LvIyaprRg~lEvW~~~~-g~~  402 (414)
                       ..  =|+-++.-+|.+.+|+++. |+.
T Consensus       159 -~~--nlfas~Sgd~~l~lwdvr~~gk~  183 (311)
T KOG0277|consen  159 -IP--NLFASASGDGTLRLWDVRSPGKF  183 (311)
T ss_pred             -CC--CeEEEccCCceEEEEEecCCCce
Confidence             01  2778999999999999886 443

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=88.25  E-value=2.5  Score=42.57  Aligned_cols=76  Identities=18%  Similarity=0.152  Sum_probs=49.0

Q ss_pred             eeeccCcceeeeeecceEEEEeecCCCCCceeecccCCCCCCCeEEEEEeEEeCCcEEEEEeccccEEEEEecCCcEEe
Q 015021           35 LLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVH  113 (414)
Q Consensus        35 ~~~sp~~~~la~A~~~~~v~~~w~~~~~~~v~~~g~l~~~~~e~ITs~~~lpl~dw~~I~VG~ssG~vrfyte~G~LL~  113 (414)
                      ++++.+|.+||+-+++.+-|-.=.++...-+.=|..-.+...| =.=++|  -+|.+.+|.-.++|+|+||+..|..||
T Consensus         3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQ-WRkl~W--SpD~tlLa~a~S~G~i~vfdl~g~~lf   78 (282)
T PF15492_consen    3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQ-WRKLAW--SPDCTLLAYAESTGTIRVFDLMGSELF   78 (282)
T ss_pred             eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCch-heEEEE--CCCCcEEEEEcCCCeEEEEecccceeE
Confidence            6789999999999999988832222211111112211111112 111222  189999999999999999999998888

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=88.14  E-value=1.2  Score=47.67  Aligned_cols=67  Identities=18%  Similarity=0.220  Sum_probs=51.9

Q ss_pred             eeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccc--eeeEEEEEecccccccccccCCCCCcceEEEEEEcC
Q 015021          310 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA--SCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP  387 (414)
Q Consensus       310 ~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdA--q~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap  387 (414)
                      ...+..||||++++..|+.|+|..+|-.+-.++.-||+|-..  +..|+...             +.       -||-+.
T Consensus       435 s~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e-------------~S-------kvat~~  494 (503)
T KOG0282|consen  435 SCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVE-------------PS-------KVATCG  494 (503)
T ss_pred             eeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCC-------------cc-------eeEecc
Confidence            345778999999999999999999999999999999999331  23454321             12       346667


Q ss_pred             CCCeEEEee
Q 015021          388 RKGIIEHLA  396 (414)
Q Consensus       388 rRg~lEvW~  396 (414)
                      =.|.|.||+
T Consensus       495 w~G~Ikiwd  503 (503)
T KOG0282|consen  495 WDGLIKIWD  503 (503)
T ss_pred             cCceeEecC
Confidence            789999995

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=88.07  E-value=2.2  Score=47.79  Aligned_cols=82  Identities=13%  Similarity=0.133  Sum_probs=64.3

Q ss_pred             CCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEE
Q 015021          305 DHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAI  384 (414)
Q Consensus       305 D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvI  384 (414)
                      -+...+.+++++|+.+|+|+..-+--.=++|+.++.++-+.+|||.-  -|-.-+...              +   -++-
T Consensus       461 aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RG--vw~V~Fs~~--------------d---q~la  521 (775)
T KOG0319|consen  461 AHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRG--VWCVSFSKN--------------D---QLLA  521 (775)
T ss_pred             hhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccc--eEEEEeccc--------------c---ceeE
Confidence            34577899999999999999877777778888899999999999982  133222111              1   2666


Q ss_pred             EcCCCCeEEEeeCCCCcceee
Q 015021          385 HAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       385 yaprRg~lEvW~~~~g~~v~~  405 (414)
                      -+.-+..|+||++.++.|+-|
T Consensus       522 T~SgD~TvKIW~is~fSClkT  542 (775)
T KOG0319|consen  522 TCSGDKTVKIWSISTFSCLKT  542 (775)
T ss_pred             eccCCceEEEEEeccceeeee
Confidence            778899999999999999866

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=87.56  E-value=3.1  Score=46.71  Aligned_cols=69  Identities=23%  Similarity=0.370  Sum_probs=49.1

Q ss_pred             CCcEEEEEeccccEEEEEecCCcEEeecc-cCcc--------ceeEEEEecccCCCCCCCCCCeEEEEeCCe-EEEEeC-
Q 015021           88 EEMRALAVGTSRGYFLVYDLKGDLVHRQL-IHPG--------RILKLRVRGSRRDLTQDTAEEEVCVVMPGV-LARFDG-  156 (414)
Q Consensus        88 ~dw~~I~VG~ssG~vrfyte~G~LL~sQ~-lh~~--------pV~~ik~r~~~~~~~~~~~~eel~Ily~~~-iv~IdG-  156 (414)
                      ||-...+||+=.|+.|||+-.|..|..|. ++..        .|..|.+....        .++|.|--.+- |=++|| 
T Consensus       461 PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~--------~~~vLVTSnDSrIRI~d~~  532 (712)
T KOG0283|consen  461 PDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGD--------PDEVLVTSNDSRIRIYDGR  532 (712)
T ss_pred             cCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCC--------CCeEEEecCCCceEEEecc
Confidence            66778999999999999999999888873 3222        45555544433        33788888886 778899 


Q ss_pred             -hhHHHHHH
Q 015021          157 -SEIQKMLQ  164 (414)
Q Consensus       157 -~sL~~~Lr  164 (414)
                       -+|-.-++
T Consensus       533 ~~~lv~KfK  541 (712)
T KOG0283|consen  533 DKDLVHKFK  541 (712)
T ss_pred             chhhhhhhc
Confidence             66654443

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=86.82  E-value=4.7  Score=42.21  Aligned_cols=50  Identities=12%  Similarity=0.062  Sum_probs=44.3

Q ss_pred             ccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeeccccc
Q 015021          301 TCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRD  350 (414)
Q Consensus       301 ~~l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRd  350 (414)
                      +.+.-+-.-+.+|.++|.+.|+|....++-|=++|+++|+..--.-|+-.
T Consensus       145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~  194 (460)
T KOG0285|consen  145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIE  194 (460)
T ss_pred             hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhh
Confidence            45777788899999999999999999999999999999999887777643

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=86.76  E-value=3.3  Score=45.01  Aligned_cols=40  Identities=25%  Similarity=0.343  Sum_probs=37.3

Q ss_pred             ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeE
Q 015021          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVV  342 (414)
Q Consensus       303 l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vv  342 (414)
                      +.+++-....|+.||++.++|++|..+.|+|+|+++..+-
T Consensus       483 ~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~  522 (603)
T KOG0318|consen  483 LLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVK  522 (603)
T ss_pred             eecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCcee
Confidence            6777888999999999999999999999999999999983

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=86.67  E-value=0.58  Score=46.93  Aligned_cols=47  Identities=23%  Similarity=0.377  Sum_probs=40.6

Q ss_pred             CCccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeee
Q 015021          299 PLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLW  345 (414)
Q Consensus       299 pl~~l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmw  345 (414)
                      |+.+|.-++-.+..|..+|+|+++|+.-.+.-|-|+|+..++.+|+.
T Consensus       181 pv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~i  227 (313)
T KOG1407|consen  181 PVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCI  227 (313)
T ss_pred             cccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheee
Confidence            44456666667889999999999999888889999999999999987

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=86.29  E-value=12  Score=42.52  Aligned_cols=88  Identities=16%  Similarity=0.215  Sum_probs=63.9

Q ss_pred             eeeccCcceeeeeecc--eEEEEeecCCCCCceeecccCCCCCCCeEEEEEeEEe-CCcEEEEEeccccEEEEEec-CCc
Q 015021           35 LLCALDMHTIALANRY--QTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVF-EEMRALAVGTSRGYFLVYDL-KGD  110 (414)
Q Consensus        35 ~~~sp~~~~la~A~~~--~~v~~~w~~~~~~~v~~~g~l~~~~~e~ITs~~~lpl-~dw~~I~VG~ssG~vrfyte-~G~  110 (414)
                      +++..+||.||++...  .++|=.|-+. .+-++=-|-.     .+||++   .. ||-..||-|-.+|-|++|.. +|-
T Consensus       313 ~~~N~tGDWiA~g~~klgQLlVweWqsE-sYVlKQQgH~-----~~i~~l---~YSpDgq~iaTG~eDgKVKvWn~~Sgf  383 (893)
T KOG0291|consen  313 VSFNSTGDWIAFGCSKLGQLLVWEWQSE-SYVLKQQGHS-----DRITSL---AYSPDGQLIATGAEDGKVKVWNTQSGF  383 (893)
T ss_pred             EEecccCCEEEEcCCccceEEEEEeecc-ceeeeccccc-----cceeeE---EECCCCcEEEeccCCCcEEEEeccCce
Confidence            4567889999999988  7777778554 2223333333     335544   44 78899999999999999995 777


Q ss_pred             EEeecccCccceeEEEEeccc
Q 015021          111 LVHRQLIHPGRILKLRVRGSR  131 (414)
Q Consensus       111 LL~sQ~lh~~pV~~ik~r~~~  131 (414)
                      ++..=-=|.+-|..+++--..
T Consensus       384 C~vTFteHts~Vt~v~f~~~g  404 (893)
T KOG0291|consen  384 CFVTFTEHTSGVTAVQFTARG  404 (893)
T ss_pred             EEEEeccCCCceEEEEEEecC
Confidence            777666678888888865544

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=86.28  E-value=5.6  Score=37.12  Aligned_cols=75  Identities=15%  Similarity=0.244  Sum_probs=50.6

Q ss_pred             eeEEEECCCCCEEEEE--cCC-CcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEEEc
Q 015021          310 GERLTLSPSGSLAAIT--DSL-GRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA  386 (414)
Q Consensus       310 ~~~i~~sP~~~laa~t--D~l-GRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIya  386 (414)
                      ...|.-||+|+++|++  +++ |.|-++|+.+...+.-.+-..-..|.|-.      ++           ++ +.-..-+
T Consensus       103 ~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsP------dG-----------r~-~~ta~t~  164 (194)
T PF08662_consen  103 RNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWSP------DG-----------RY-LATATTS  164 (194)
T ss_pred             ceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEcC------CC-----------CE-EEEEEec
Confidence            3579999999998886  344 99999999999998877655433444431      11           11 1222334


Q ss_pred             CC---CCeEEEeeCCCCcce
Q 015021          387 PR---KGIIEHLAGMADENW  403 (414)
Q Consensus       387 pr---Rg~lEvW~~~~g~~v  403 (414)
                      ||   +.-+.||+. +|+++
T Consensus       165 ~r~~~dng~~Iw~~-~G~~l  183 (194)
T PF08662_consen  165 PRLRVDNGFKIWSF-QGRLL  183 (194)
T ss_pred             cceeccccEEEEEe-cCeEe
Confidence            54   366899998 58888

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=86.21  E-value=5.3  Score=37.29  Aligned_cols=76  Identities=16%  Similarity=0.163  Sum_probs=48.6

Q ss_pred             eeeEEEECCCCCE-EEEE-cCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEE--
Q 015021          309 KGERLTLSPSGSL-AAIT-DSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAI--  384 (414)
Q Consensus       309 ~~~~i~~sP~~~l-aa~t-D~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvI--  384 (414)
                      .+..++=+|+|+. |+++ +.-++|.|+|+..-.+...=++.++ .+.|=.      .         +   .  +|++  
T Consensus        61 ~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~~~~~n-~i~wsP------~---------G---~--~l~~~g  119 (194)
T PF08662_consen   61 PIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFGTQPRN-TISWSP------D---------G---R--FLVLAG  119 (194)
T ss_pred             ceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeecCCCce-EEEECC------C---------C---C--EEEEEE
Confidence            4889999999964 4553 5567999999973333333344444 233321      1         1   1  3444  


Q ss_pred             EcCCCCeEEEeeCCCCcceee
Q 015021          385 HAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       385 yaprRg~lEvW~~~~g~~v~~  405 (414)
                      +.-..|.|++|+++..++|.+
T Consensus       120 ~~n~~G~l~~wd~~~~~~i~~  140 (194)
T PF08662_consen  120 FGNLNGDLEFWDVRKKKKIST  140 (194)
T ss_pred             ccCCCcEEEEEECCCCEEeec
Confidence            344568899999999998865

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=85.97  E-value=1.5  Score=46.32  Aligned_cols=42  Identities=17%  Similarity=0.186  Sum_probs=39.8

Q ss_pred             eeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccc
Q 015021          310 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA  351 (414)
Q Consensus       310 ~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdA  351 (414)
                      -.+++.||++.|+|+.-..|+|.+|++.+|.+..+.|+-+..
T Consensus       390 wtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~  431 (459)
T KOG0288|consen  390 WTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSN  431 (459)
T ss_pred             cceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCC
Confidence            677899999999999999999999999999999999998886

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=85.78  E-value=4.5  Score=41.95  Aligned_cols=67  Identities=13%  Similarity=0.074  Sum_probs=51.0

Q ss_pred             CCCEEEEEcCC-----CcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEEEcC-----
Q 015021          318 SGSLAAITDSL-----GRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP-----  387 (414)
Q Consensus       318 ~~~laa~tD~l-----GRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap-----  387 (414)
                      +++++-++|.-     |||.+||..++.++.|+..-+..+.  + +.  .|             ..  +|.+=.+     
T Consensus        11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~~--~-~s--pD-------------g~--~lyva~~~~~R~   70 (352)
T TIGR02658        11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPNP--V-VA--SD-------------GS--FFAHASTVYSRI   70 (352)
T ss_pred             CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCce--e-EC--CC-------------CC--EEEEEecccccc
Confidence            56889999987     9999999999999999976665553  2 11  11             11  4556666     


Q ss_pred             ----CCCeEEEeeCCCCccee
Q 015021          388 ----RKGIIEHLAGMADENWT  404 (414)
Q Consensus       388 ----rRg~lEvW~~~~g~~v~  404 (414)
                          |.+.|+|||+++++.+.
T Consensus        71 ~~G~~~d~V~v~D~~t~~~~~   91 (352)
T TIGR02658        71 ARGKRTDYVEVIDPQTHLPIA   91 (352)
T ss_pred             ccCCCCCEEEEEECccCcEEe
Confidence                88999999999998874

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=84.91  E-value=2.6  Score=44.00  Aligned_cols=98  Identities=14%  Similarity=0.012  Sum_probs=68.9

Q ss_pred             ceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEE-----EEEeccccc-------ccc-------
Q 015021          308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFM-----EMLVNKDAA-------TSS-------  368 (414)
Q Consensus       308 R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi-----~~~~~~~~~-------~~~-------  368 (414)
                      -.|..+|+..+.++.+...++..|.++|+++|.++...=|+-||-.+-.     .+.+..|..       +.+       
T Consensus       236 HtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrV  315 (499)
T KOG0281|consen  236 HTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRV  315 (499)
T ss_pred             CCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHH
Confidence            3477899999999999989999999999999999999999998866532     222222211       000       


Q ss_pred             ---cccCCCCCcceEEEEEEcCCCCeEEEeeCCCCcceee
Q 015021          369 ---AYYAPVKSDYCLCLAIHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       369 ---~~~~~~k~~~~l~LvIyaprRg~lEvW~~~~g~~v~~  405 (414)
                         ........++-==+++-|.-+..|+||++.+|+.|-|
T Consensus       316 LvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRt  355 (499)
T KOG0281|consen  316 LVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRT  355 (499)
T ss_pred             HhhhhhheeeeccccceEEEecCCceEEEEeccceeeehh
Confidence               0111111111112778999999999999999999965

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=84.83  E-value=4.8  Score=42.20  Aligned_cols=64  Identities=31%  Similarity=0.435  Sum_probs=37.5

Q ss_pred             eeeeeecc-eEEEEeecCCC-CCceeecc-cCCCCCCCeEEEEEeEEe---CCc---EEEEEeccccEEEEEe
Q 015021           43 TIALANRY-QTVIINWADPE-GLVAKIRP-ELSPIASEYITAIEWLVF---EEM---RALAVGTSRGYFLVYD  106 (414)
Q Consensus        43 ~la~A~~~-~~v~~~w~~~~-~~~v~~~g-~l~~~~~e~ITs~~~lpl---~dw---~~I~VG~ssG~vrfyt  106 (414)
                      .+||||++ .++|.--.... .++...+. -++...++.||+++|-.+   .|-   .|+.|||+.|.|..|.
T Consensus        99 Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fk  171 (395)
T PF08596_consen   99 FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFK  171 (395)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEE
T ss_pred             EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEE
Confidence            45788865 45555442222 12222222 133345689999999877   333   8999999999999996

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=84.47  E-value=1.9  Score=32.06  Aligned_cols=36  Identities=25%  Similarity=0.478  Sum_probs=30.2

Q ss_pred             CCeEEEEEeEEeCCcEEEEEeccccEEEEEecCCcEEe
Q 015021           76 SEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVH  113 (414)
Q Consensus        76 ~e~ITs~~~lpl~dw~~I~VG~ssG~vrfyte~G~LL~  113 (414)
                      .++|+++.|=|-.|  .||+|+.+|.|.+|-.+|..+.
T Consensus        11 ~~~v~~~~w~P~md--LiA~~t~~g~v~v~Rl~~qriw   46 (47)
T PF12894_consen   11 PSRVSCMSWCPTMD--LIALGTEDGEVLVYRLNWQRIW   46 (47)
T ss_pred             CCcEEEEEECCCCC--EEEEEECCCeEEEEECCCcCcc
Confidence            46688888877655  7999999999999999998765

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=84.16  E-value=12  Score=39.17  Aligned_cols=98  Identities=14%  Similarity=0.051  Sum_probs=66.5

Q ss_pred             ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecc-------ccc-------cc-
Q 015021          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNK-------DAA-------TS-  367 (414)
Q Consensus       303 l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~-------~~~-------~~-  367 (414)
                      +..++-....+.-|-+|.|.|+.|-.|.|++++..++...+..- |--..+.|+.-....       +++       .+ 
T Consensus       102 ltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~-~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~  180 (399)
T KOG0296|consen  102 LTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD-QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ  180 (399)
T ss_pred             ecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEee-cccCceEEEEecccccEEEeecCCCcEEEEECCCc
Confidence            56677778999999999999999999999999999998877554 455566676554321       111       00 


Q ss_pred             ---------ccccCCCC--CcceEEEEEEcCCCCeEEEeeCCCCcce
Q 015021          368 ---------SAYYAPVK--SDYCLCLAIHAPRKGIIEHLAGMADENW  403 (414)
Q Consensus       368 ---------~~~~~~~k--~~~~l~LvIyaprRg~lEvW~~~~g~~v  403 (414)
                               +.+-..++  ++.-..+.-|-  +|+|.+|+.++|+.+
T Consensus       181 ~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~--dgti~~Wn~ktg~p~  225 (399)
T KOG0296|consen  181 ALCKVMSGHNSPCTCGEFIPDGKRILTGYD--DGTIIVWNPKTGQPL  225 (399)
T ss_pred             ceeeEecCCCCCcccccccCCCceEEEEec--CceEEEEecCCCcee
Confidence                     01101111  11112455665  999999999999865

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=84.08  E-value=1.2  Score=46.04  Aligned_cols=81  Identities=15%  Similarity=0.160  Sum_probs=62.4

Q ss_pred             CCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEEE
Q 015021          306 HPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIH  385 (414)
Q Consensus       306 ~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIy  385 (414)
                      +.....++..|-|+.-+..+..+-.|-+--+..|..++-++|+-.    ++.-.--++++               .-+|.
T Consensus       305 HtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsS----yvn~a~ft~dG---------------~~iis  365 (508)
T KOG0275|consen  305 HTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSS----YVNEATFTDDG---------------HHIIS  365 (508)
T ss_pred             hccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccc----cccceEEcCCC---------------CeEEE
Confidence            345577889999997666666666677778899999999999988    66422222222               25799


Q ss_pred             cCCCCeEEEeeCCCCcceee
Q 015021          386 APRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       386 aprRg~lEvW~~~~g~~v~~  405 (414)
                      |..+|.++||++++++|+.|
T Consensus       366 aSsDgtvkvW~~KtteC~~T  385 (508)
T KOG0275|consen  366 ASSDGTVKVWHGKTTECLST  385 (508)
T ss_pred             ecCCccEEEecCcchhhhhh
Confidence            99999999999999999987

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=83.83  E-value=2.8  Score=46.33  Aligned_cols=84  Identities=23%  Similarity=0.208  Sum_probs=57.5

Q ss_pred             eeeeccCcceeeeeecc-eEEEEeecCCCCCceeecccCCCCCCCeEE-EEEeEEeCCcEEEEEeccccEEEEEe-cCCc
Q 015021           34 NLLCALDMHTIALANRY-QTVIINWADPEGLVAKIRPELSPIASEYIT-AIEWLVFEEMRALAVGTSRGYFLVYD-LKGD  110 (414)
Q Consensus        34 ~~~~sp~~~~la~A~~~-~~v~~~w~~~~~~~v~~~g~l~~~~~e~IT-s~~~lpl~dw~~I~VG~ssG~vrfyt-e~G~  110 (414)
                      .+-..|--|+||.+.+. .+++-+...+.    -|  +++ +++|.+| +++|=  +|-..+||||.+|-+++.+ |+|.
T Consensus        25 ~~ewnP~~dLiA~~t~~gelli~R~n~qR----lw--tip-~p~~~v~~sL~W~--~DGkllaVg~kdG~I~L~Dve~~~   95 (665)
T KOG4640|consen   25 RIEWNPKMDLIATRTEKGELLIHRLNWQR----LW--TIP-IPGENVTASLCWR--PDGKLLAVGFKDGTIRLHDVEKGG   95 (665)
T ss_pred             EEEEcCccchhheeccCCcEEEEEeccce----eE--ecc-CCCCccceeeeec--CCCCEEEEEecCCeEEEEEccCCC
Confidence            34567889999987776 46664322221    01  122 2477787 66665  4789999999999999999 8999


Q ss_pred             EEeecccC-ccceeEEE
Q 015021          111 LVHRQLIH-PGRILKLR  126 (414)
Q Consensus       111 LL~sQ~lh-~~pV~~ik  126 (414)
                      .|.+..+. +++|.++-
T Consensus        96 ~l~~~~~s~e~~is~~~  112 (665)
T KOG4640|consen   96 RLVSFLFSVETDISKGI  112 (665)
T ss_pred             ceeccccccccchheee
Confidence            99887665 34555544

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.76  E-value=16  Score=40.74  Aligned_cols=211  Identities=17%  Similarity=0.237  Sum_probs=134.7

Q ss_pred             CeEEEEEeEEeCCcEEEEEeccccEEEEEe-cCCcEEeecccCccceeEEEEecccCCCCCCCCCCeEEEEeCCeEEEEe
Q 015021           77 EYITAIEWLVFEEMRALAVGTSRGYFLVYD-LKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGVLARFD  155 (414)
Q Consensus        77 e~ITs~~~lpl~dw~~I~VG~ssG~vrfyt-e~G~LL~sQ~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ily~~~iv~Id  155 (414)
                      .-|.+.-.|+=.+|  |++|-++++||+|. .+|+.+..=--|++-|.+|.+..+.+.           ||-.       
T Consensus        56 ~PvRa~kfiaRknW--iv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~-----------vLts-------  115 (794)
T KOG0276|consen   56 VPVRAAKFIARKNW--IVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPY-----------VLTS-------  115 (794)
T ss_pred             cchhhheeeeccce--EEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCe-----------EEec-------
Confidence            45777777777888  78999999999999 799999888889999999998776651           1110       


Q ss_pred             ChhHHHHHHHHHHhccccccCCCCccCCCcccccccCCccceecccCCCCCceeeEEeCCCCCCchhhhccccceeEEEe
Q 015021          156 GSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDLENSYERLPHQLWNVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTI  235 (414)
Q Consensus       156 G~sL~~~Lr~c~~~~~~~~w~~~~~~~~~~~~~~~~~~L~ykKW~l~~~~~i~Daa~~G~~~p~~~d~~s~~~~~~~i~v  235 (414)
                                                  +.       .+-.|.|+-+..=.|.- .|            .+|..|  |..
T Consensus       116 ----------------------------SD-------Dm~iKlW~we~~wa~~q-tf------------eGH~Hy--VMq  145 (794)
T KOG0276|consen  116 ----------------------------SD-------DMTIKLWDWENEWACEQ-TF------------EGHEHY--VMQ  145 (794)
T ss_pred             ----------------------------CC-------ccEEEEeeccCceeeee-EE------------cCcceE--EEE
Confidence                                        01       15567777765322211 11            123333  321


Q ss_pred             CCCceeEEEEeccCCCcchhhhhhhhhhHHHHHHhhhhhhhhhcCCCCCCCCCCCCcccccCCCCccccCCCceeeEEEE
Q 015021          236 GEDSVISAFRLSEDRSRSLVGAILSKVVPATFSTISSLSKMIWRSEQSPKKSEPKPQSFARASPLTCLKDHPRKGERLTL  315 (414)
Q Consensus       236 G~~P~la~y~~~~~~~~s~~~al~S~va~av~S~v~S~ak~~W~~~~~~~~~e~kp~~~~~a~pl~~l~D~~R~~~~i~~  315 (414)
                           + .|+.....+  |.++-+.           .-.| .|.=.        .      ..|-..|.-+.|...+|.-
T Consensus       146 -----v-~fnPkD~nt--FaS~sLD-----------rTVK-VWslg--------s------~~~nfTl~gHekGVN~Vdy  191 (794)
T KOG0276|consen  146 -----V-AFNPKDPNT--FASASLD-----------RTVK-VWSLG--------S------PHPNFTLEGHEKGVNCVDY  191 (794)
T ss_pred             -----E-EecCCCccc--eeeeecc-----------ccEE-EEEcC--------C------CCCceeeeccccCcceEEe
Confidence                 2 233332222  2221111           1123 55211        0      1233557777888888888


Q ss_pred             CCCC--CEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEEEcCCCCeEE
Q 015021          316 SPSG--SLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIE  393 (414)
Q Consensus       316 sP~~--~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lE  393 (414)
                      =|.|  -+....-.+--|-++|-++...|+-.+||-.    -+....-               |.-|=++|-..-+|.+.
T Consensus       192 y~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~----Nvs~v~f---------------hp~lpiiisgsEDGTvr  252 (794)
T KOG0276|consen  192 YTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN----NVSFVFF---------------HPELPIIISGSEDGTVR  252 (794)
T ss_pred             ccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc----cceEEEe---------------cCCCcEEEEecCCccEE
Confidence            7777  3666654455788999999999999999977    3333211               22334899999999999


Q ss_pred             EeeCCCCcceeeccceee
Q 015021          394 HLAGMADENWTTSLNYSV  411 (414)
Q Consensus       394 vW~~~~g~~v~~~~~~~~  411 (414)
                      ||+..+-+.. ..|||..
T Consensus       253 iWhs~Ty~lE-~tLn~gl  269 (794)
T KOG0276|consen  253 IWNSKTYKLE-KTLNYGL  269 (794)
T ss_pred             EecCcceehh-hhhhcCC
Confidence            9999998766 6688864

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=83.50  E-value=2.8  Score=47.22  Aligned_cols=89  Identities=12%  Similarity=0.104  Sum_probs=72.5

Q ss_pred             CCccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcc
Q 015021          299 PLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDY  378 (414)
Q Consensus       299 pl~~l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~  378 (414)
                      ++-.|+-+++.+..+..+-.|...|..--+|-|+|+|+..-..+-=.+||-|+=.+..-..  .            +   
T Consensus        99 ~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~--~------------~---  161 (888)
T KOG0306|consen   99 ILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLN--G------------D---  161 (888)
T ss_pred             eeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccC--C------------C---
Confidence            4445888999999999999999999999999999999999999999999999644333221  0            1   


Q ss_pred             eEEEEEEcCCCCeEEEeeCCCCcceeec
Q 015021          379 CLCLAIHAPRKGIIEHLAGMADENWTTS  406 (414)
Q Consensus       379 ~l~LvIyaprRg~lEvW~~~~g~~v~~~  406 (414)
                        -++|-..+++.|++|++.+-+|+-|-
T Consensus       162 --~~lvS~sKDs~iK~WdL~tqhCf~Th  187 (888)
T KOG0306|consen  162 --SFLVSVSKDSMIKFWDLETQHCFETH  187 (888)
T ss_pred             --eEEEEeccCceEEEEecccceeeeEE
Confidence              27788899999999999998888553

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=83.07  E-value=8  Score=42.16  Aligned_cols=88  Identities=20%  Similarity=0.139  Sum_probs=62.2

Q ss_pred             cccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEE
Q 015021          302 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLC  381 (414)
Q Consensus       302 ~l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~  381 (414)
                      ++.++.|=..++--+|||.++|.+-++|.|+|+|=.+|..+-...+ -+|.=+=|-...=.+             +.-.|
T Consensus       185 s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~-~~aHkGsIfalsWsP-------------Ds~~~  250 (603)
T KOG0318|consen  185 SFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELED-SDAHKGSIFALSWSP-------------DSTQF  250 (603)
T ss_pred             cccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecC-CCCccccEEEEEECC-------------CCceE
Confidence            4667778889999999999999999999999999999999988865 333332222221111             11114


Q ss_pred             EEEEcCCCCeEEEeeCCCCcceee
Q 015021          382 LAIHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       382 LvIyaprRg~lEvW~~~~g~~v~~  405 (414)
                      |-  +.-+-.++||++-+..++.|
T Consensus       251 ~T--~SaDkt~KIWdVs~~slv~t  272 (603)
T KOG0318|consen  251 LT--VSADKTIKIWDVSTNSLVST  272 (603)
T ss_pred             EE--ecCCceEEEEEeeccceEEE
Confidence            33  34467889999888877755

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=82.61  E-value=2.2  Score=48.28  Aligned_cols=66  Identities=24%  Similarity=0.313  Sum_probs=46.3

Q ss_pred             CEEEEEcCCCcEEEEEcCcceeEeeecccc-c--ceeeEEEEEecccccccccccCCCCCcceEEEEEEcCCCCeEEEee
Q 015021          320 SLAAITDSLGRILLLDTQALVVVRLWKGYR-D--ASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEHLA  396 (414)
Q Consensus       320 ~laa~tD~lGRV~L~D~~~~~vvrmwKGyR-d--Aq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEvW~  396 (414)
                      -+.|++|-.|||+|+|...+.++- |=-.- |  -++.|++....               .+-+.|+||.|  ..|-.|+
T Consensus        80 lliAsaD~~GrIil~d~~~~s~~~-~l~~~~~~~qdl~W~~~rd~---------------Srd~LlaIh~s--s~lvLwn  141 (1062)
T KOG1912|consen   80 LLIASADISGRIILVDFVLASVIN-WLSHSNDSVQDLCWVPARDD---------------SRDVLLAIHGS--STLVLWN  141 (1062)
T ss_pred             eeEEeccccCcEEEEEehhhhhhh-hhcCCCcchhheeeeeccCc---------------chheeEEecCC--cEEEEEE
Confidence            478899999999999999876543 31111 1  23455554321               12457999998  6899999


Q ss_pred             CCCCcce
Q 015021          397 GMADENW  403 (414)
Q Consensus       397 ~~~g~~v  403 (414)
                      +.+|+++
T Consensus       142 tdtG~k~  148 (1062)
T KOG1912|consen  142 TDTGEKF  148 (1062)
T ss_pred             ccCCcee
Confidence            9999987

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.15  E-value=9.8  Score=44.46  Aligned_cols=76  Identities=20%  Similarity=0.268  Sum_probs=58.1

Q ss_pred             ecCCCCCceeecccCCCCCCCeEEEEEeEEeCCc--EEEEEeccccEEEEEecCC-------cEEeecccCccceeEEEE
Q 015021           57 WADPEGLVAKIRPELSPIASEYITAIEWLVFEEM--RALAVGTSRGYFLVYDLKG-------DLVHRQLIHPGRILKLRV  127 (414)
Q Consensus        57 w~~~~~~~v~~~g~l~~~~~e~ITs~~~lpl~dw--~~I~VG~ssG~vrfyte~G-------~LL~sQ~lh~~pV~~ik~  127 (414)
                      |..++.++++-+|.++.  .+|-.-+.|=++.+.  =+||=|+.+|.|-||+..-       .+|..+.-|.++|+.|.+
T Consensus        47 d~~~~~~dlk~~~s~~s--~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDf  124 (1049)
T KOG0307|consen   47 DFSDESSDLKPVGSLQS--SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDF  124 (1049)
T ss_pred             cccCccccccccccccc--cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeec
Confidence            44444556677787766  588888888888444  4899999999999999544       467777899999999998


Q ss_pred             ecccCCC
Q 015021          128 RGSRRDL  134 (414)
Q Consensus       128 r~~~~~~  134 (414)
                      ..-+.++
T Consensus       125 N~~q~nl  131 (1049)
T KOG0307|consen  125 NPFQGNL  131 (1049)
T ss_pred             cccCCce
Confidence            7766543

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=81.96  E-value=3.8  Score=40.90  Aligned_cols=77  Identities=14%  Similarity=0.172  Sum_probs=57.8

Q ss_pred             eeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEEEcCCC
Q 015021          310 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRK  389 (414)
Q Consensus       310 ~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprR  389 (414)
                      +.+++.||+++-..++-..+-+=|+|-.+|.++..+||+-+-+..==-...              +++   --|+-..-+
T Consensus       186 it~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~--------------qsd---thV~sgSED  248 (307)
T KOG0316|consen  186 ITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLN--------------QSD---THVFSGSED  248 (307)
T ss_pred             ceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeec--------------ccc---eeEEeccCC
Confidence            567899999986666666678889999999999999999884432111110              111   267888999


Q ss_pred             CeEEEeeCCCCcce
Q 015021          390 GIIEHLAGMADENW  403 (414)
Q Consensus       390 g~lEvW~~~~g~~v  403 (414)
                      |.+-+|++-.++.+
T Consensus       249 G~Vy~wdLvd~~~~  262 (307)
T KOG0316|consen  249 GKVYFWDLVDETQI  262 (307)
T ss_pred             ceEEEEEeccceee
Confidence            99999999988876

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=81.84  E-value=1.2  Score=47.75  Aligned_cols=85  Identities=14%  Similarity=0.077  Sum_probs=66.5

Q ss_pred             ccccCCCceeeEEEECC-CCCEEEEEcCCCcEEEEEcCc-ceeEeeecccccceeeEEEEEecccccccccccCCCCCcc
Q 015021          301 TCLKDHPRKGERLTLSP-SGSLAAITDSLGRILLLDTQA-LVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDY  378 (414)
Q Consensus       301 ~~l~D~~R~~~~i~~sP-~~~laa~tD~lGRV~L~D~~~-~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~  378 (414)
                      +.+.+++..+.+|...| .+.|+...-.+|.|.|+|+-. +..+|-+.||+.+=      .+..  .        .+ ..
T Consensus       208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~V------rd~~--~--------s~-~g  270 (503)
T KOG0282|consen  208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPV------RDAS--F--------NN-CG  270 (503)
T ss_pred             eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhh------hhhh--c--------cc-cC
Confidence            45889988899999999 889999999999999999998 99999999998731      1100  0        00 00


Q ss_pred             eEEEEEEcCCCCeEEEeeCCCCccee
Q 015021          379 CLCLAIHAPRKGIIEHLAGMADENWT  404 (414)
Q Consensus       379 ~l~LvIyaprRg~lEvW~~~~g~~v~  404 (414)
                        .-..-+.-++.|.+||+.+|+++.
T Consensus       271 --~~fLS~sfD~~lKlwDtETG~~~~  294 (503)
T KOG0282|consen  271 --TSFLSASFDRFLKLWDTETGQVLS  294 (503)
T ss_pred             --CeeeeeecceeeeeeccccceEEE
Confidence              122457779999999999999883

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=81.61  E-value=18  Score=33.25  Aligned_cols=86  Identities=22%  Similarity=0.197  Sum_probs=61.5

Q ss_pred             cccCCCceeeEEEECCCCCEEEEEcC-CCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceE
Q 015021          302 CLKDHPRKGERLTLSPSGSLAAITDS-LGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCL  380 (414)
Q Consensus       302 ~l~D~~R~~~~i~~sP~~~laa~tD~-lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l  380 (414)
                      .+....-.+..+..+|++++.+.... .|.+.++|+..+..++..+|+.+    .+....-.+.+           +   
T Consensus       150 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~-----------~---  211 (466)
T COG2319         150 TLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTD----PVSSLAFSPDG-----------G---  211 (466)
T ss_pred             EEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCC----ceEEEEEcCCc-----------c---
Confidence            35555555669999999987777775 99999999999999999999555    33332211111           1   


Q ss_pred             EEEEEcCCCCeEEEeeCCCCcceee
Q 015021          381 CLAIHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       381 ~LvIyaprRg~lEvW~~~~g~~v~~  405 (414)
                      ++++-...+|.+.+|+.+.++.+.+
T Consensus       212 ~~~~~~~~d~~i~~wd~~~~~~~~~  236 (466)
T COG2319         212 LLIASGSSDGTIRLWDLSTGKLLRS  236 (466)
T ss_pred             eEEEEecCCCcEEEEECCCCcEEee
Confidence            3444468889999999888887754

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=80.22  E-value=12  Score=39.16  Aligned_cols=82  Identities=20%  Similarity=0.220  Sum_probs=56.7

Q ss_pred             ceeeEEEECCCCCEEEE--EcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEEE
Q 015021          308 RKGERLTLSPSGSLAAI--TDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIH  385 (414)
Q Consensus       308 R~~~~i~~sP~~~laa~--tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIy  385 (414)
                      +....+++++.+.|.|.  +-+.|.|+|+|+.+.+.+-+...|++    =+.+..-..+|               -|.--
T Consensus       130 ~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~----~lAalafs~~G---------------~llAT  190 (391)
T KOG2110|consen  130 KGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKG----PLAALAFSPDG---------------TLLAT  190 (391)
T ss_pred             cceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCC----ceeEEEECCCC---------------CEEEE
Confidence            34445555555678887  34589999999999999998877777    34443322222               14445


Q ss_pred             cCCCCe-EEEeeCCCCcceeeccceeeec
Q 015021          386 APRKGI-IEHLAGMADENWTTSLNYSVRQ  413 (414)
Q Consensus       386 aprRg~-lEvW~~~~g~~v~~~~~~~~~~  413 (414)
                      |.-+|. |.|+++.+|+++     |..|.
T Consensus       191 ASeKGTVIRVf~v~~G~kl-----~eFRR  214 (391)
T KOG2110|consen  191 ASEKGTVIRVFSVPEGQKL-----YEFRR  214 (391)
T ss_pred             eccCceEEEEEEcCCccEe-----eeeeC
Confidence            666664 579999999999     88874

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=80.18  E-value=6.5  Score=41.84  Aligned_cols=261  Identities=19%  Similarity=0.215  Sum_probs=156.6

Q ss_pred             ecccccccCC-CCCcccCCCeeeeccCcceeeeeecceEEEE-eecCCCCCceeecccCCCCCCCeEEEEEeEEeCCcEE
Q 015021           15 CTDLSDLGAG-KEGWLVNDPNLLCALDMHTIALANRYQTVII-NWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRA   92 (414)
Q Consensus        15 ~~~~~~~g~~-~~~WL~~~~~~~~sp~~~~la~A~~~~~v~~-~w~~~~~~~v~~~g~l~~~~~e~ITs~~~lpl~dw~~   92 (414)
                      |.|-..+-.- +|.|+     +..|+.|.+||-|-...-++. .-..+.+  ++..-+|-- -.+-|..|.|=| +|-..
T Consensus       214 ~qt~qil~~htdEVWf-----l~FS~nGkyLAsaSkD~Taiiw~v~~d~~--~kl~~tlvg-h~~~V~yi~wSP-DdryL  284 (519)
T KOG0293|consen  214 SQTWQILQDHTDEVWF-----LQFSHNGKYLASASKDSTAIIWIVVYDVH--FKLKKTLVG-HSQPVSYIMWSP-DDRYL  284 (519)
T ss_pred             chhhhhHhhCCCcEEE-----EEEcCCCeeEeeccCCceEEEEEEecCcc--eeeeeeeec-ccCceEEEEECC-CCCeE
Confidence            4555555555 88888     347899999999887755552 2222222  444444411 135688888877 46789


Q ss_pred             EEEeccccEEEEEe-cCCcEEeecccCccceeEEEEecccCCCCCCCCCCeEEEEeCCeEEEEeChhHHHHHHHHHHhcc
Q 015021           93 LAVGTSRGYFLVYD-LKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGVLARFDGSEIQKMLQRWFQDSN  171 (414)
Q Consensus        93 I~VG~ssG~vrfyt-e~G~LL~sQ~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ily~~~iv~IdG~sL~~~Lr~c~~~~~  171 (414)
                      +++|++.- ++..+ .+|++.+.=- | .-=.++.                =+.=||++.-+|-|..=    |.|     
T Consensus       285 laCg~~e~-~~lwDv~tgd~~~~y~-~-~~~~S~~----------------sc~W~pDg~~~V~Gs~d----r~i-----  336 (519)
T KOG0293|consen  285 LACGFDEV-LSLWDVDTGDLRHLYP-S-GLGFSVS----------------SCAWCPDGFRFVTGSPD----RTI-----  336 (519)
T ss_pred             EecCchHh-eeeccCCcchhhhhcc-c-CcCCCcc----------------eeEEccCCceeEecCCC----CcE-----
Confidence            99999887 77777 5777654210 0 0011122                23334444333333221    111     


Q ss_pred             ccccCCCCccCCCcccccccCCccceecccCCCCCceeeEEeCCCCCCchhhhccccceeEEEeCCCceeEEEEeccCCC
Q 015021          172 SNFWDQKPKQRDSEDLENSYERLPHQLWNVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRS  251 (414)
Q Consensus       172 ~~~w~~~~~~~~~~~~~~~~~~L~ykKW~l~~~~~i~Daa~~G~~~p~~~d~~s~~~~~~~i~vG~~P~la~y~~~~~~~  251 (414)
                       ..|+       ..++      + ..+|.-.+.-.+.|.+++            .++.+ +++++.+|-+..|..+.-..
T Consensus       337 -~~wd-------lDgn------~-~~~W~gvr~~~v~dlait------------~Dgk~-vl~v~~d~~i~l~~~e~~~d  388 (519)
T KOG0293|consen  337 -IMWD-------LDGN------I-LGNWEGVRDPKVHDLAIT------------YDGKY-VLLVTVDKKIRLYNREARVD  388 (519)
T ss_pred             -EEec-------CCcc------h-hhcccccccceeEEEEEc------------CCCcE-EEEEecccceeeechhhhhh
Confidence             1121       1111      1 344655544456666664            23444 68888888887775432110


Q ss_pred             cchhhhhhhhhhHHHHHHhhhhhhhhhcCCCCCCCCCCCCcccccCCCCccccCCCceeeEEEECCCCCEEEEEcCCCcE
Q 015021          252 RSLVGAILSKVVPATFSTISSLSKMIWRSEQSPKKSEPKPQSFARASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRI  331 (414)
Q Consensus       252 ~s~~~al~S~va~av~S~v~S~ak~~W~~~~~~~~~e~kp~~~~~a~pl~~l~D~~R~~~~i~~sP~~~laa~tD~lGRV  331 (414)
                      .                                                 .+....-.+.++++|-+|+||.+.=..--|
T Consensus       389 r-------------------------------------------------~lise~~~its~~iS~d~k~~LvnL~~qei  419 (519)
T KOG0293|consen  389 R-------------------------------------------------GLISEEQPITSFSISKDGKLALVNLQDQEI  419 (519)
T ss_pred             h-------------------------------------------------ccccccCceeEEEEcCCCcEEEEEcccCee
Confidence            0                                                 011122335788999999999998777789


Q ss_pred             EEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEEEcCCCCeEEEeeCCCCcceee
Q 015021          332 LLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       332 ~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEvW~~~~g~~v~~  405 (414)
                      -|+|++...++|-++|++--.+-=-.++...+             +   -+|-...-++-|-||+-.+|+.+++
T Consensus       420 ~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~-------------~---~fiaSGSED~kvyIWhr~sgkll~~  477 (519)
T KOG0293|consen  420 HLWDLEENKLVRKYFGHKQGHFIIRSCFGGGN-------------D---KFIASGSEDSKVYIWHRISGKLLAV  477 (519)
T ss_pred             EEeecchhhHHHHhhcccccceEEEeccCCCC-------------c---ceEEecCCCceEEEEEccCCceeEe
Confidence            99999999999999999975443223331111             1   1777888899999999999999875

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=80.12  E-value=3.4  Score=44.10  Aligned_cols=71  Identities=14%  Similarity=0.157  Sum_probs=54.3

Q ss_pred             ceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecc-cccceeeEEEEEecccccccccccCCCCCcceEEEEEEc
Q 015021          308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKG-YRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA  386 (414)
Q Consensus       308 R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKG-yRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIya  386 (414)
                      -....|+.+|+|.|.+..---|.++||.+.+|.++.+|-+ |++     |....-.+++               -.+|-+
T Consensus        82 g~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~-----ITcL~fs~dg---------------s~iiTg  141 (476)
T KOG0646|consen   82 GPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQS-----ITCLKFSDDG---------------SHIITG  141 (476)
T ss_pred             cceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccc-----eeEEEEeCCC---------------cEEEec
Confidence            4467788999999999988899999999999999999954 444     3333222222               156899


Q ss_pred             CCCCeEEEeeCC
Q 015021          387 PRKGIIEHLAGM  398 (414)
Q Consensus       387 prRg~lEvW~~~  398 (414)
                      .++|.|-||.+-
T Consensus       142 skDg~V~vW~l~  153 (476)
T KOG0646|consen  142 SKDGAVLVWLLT  153 (476)
T ss_pred             CCCccEEEEEEE
Confidence            999999999863

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	414
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 4e-06
 Identities = 63/444 (14%), Positives = 127/444 (28%), Gaps = 140/444 (31%)

Query: 45  ALANRYQTVIINWADPEGLVAKIRPEL---SPIASEYITAIEWL-----VFEEM------ 90
            L   Y      +     L++ I+ E    S +   YI   + L     VF +       
Sbjct: 86  VLRINY-----KF-----LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135

Query: 91  ------RALAVGTSRGYFLVYDLKGD----LV-------HRQLIHPGRI--LKLRVRGSR 131
                 +AL         L+  + G     +          Q     +I  L L+   S 
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195

Query: 132 RDLTQDTAEEEVCV-VMPGVLARFDGSEIQKMLQRWFQDSNSNFWDQKPKQR-----DSE 185
             + +    +++   + P   +R D S   K+     Q         KP +         
Sbjct: 196 ETVLE--MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL-- 251

Query: 186 DLENSYERLPHQLWNVSKYGPC------ADAAITGLMPPPLMEVQSSQRYFCAVTIGEDS 239
           +++N+      + WN      C          +T        +  S+      +++   S
Sbjct: 252 NVQNA------KAWNAFNLS-CKILLTTRFKQVT--------DFLSAATT-THISLDHHS 295

Query: 240 VISAFRLSEDRSRSLVGAILSKVVPATFSTISSLSKMIWRSEQSPKKSEPKPQSFARASP 299
           +     L+ D  +SL    L K +                 +  P+     P+     +P
Sbjct: 296 MT----LTPDEVKSL----LLKYL-----------------DCRPQDL---PREVLTTNP 327

Query: 300 LTC------LKDHP--------RKGERLTLSPSGSLAAITDSLGR-------ILLLDTQ- 337
                    ++D             ++LT     SL  +  +  R       +       
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387

Query: 338 -ALVVVRLWKG--YRDASCVFMEM----LVNKDAATSSAYYAPVKSDYCLCL----AIHA 386
             +++  +W      D   V  ++    LV K    S+     +  +  + L    A+H 
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH- 446

Query: 387 PRKGIIEHLAGM-ADENWTTSLNY 409
             + I++H       ++      Y
Sbjct: 447 --RSIVDHYNIPKTFDSDDLIPPY 468

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	414
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	98.58
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	98.52
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	98.45
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	98.35
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	98.35
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	98.32
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	98.28
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	98.24
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	98.23
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	98.23
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	98.2
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	98.19
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	98.16
3jrp_A	379	Fusion protein of protein transport protein SEC13	98.13
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	98.11
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	98.11
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	98.1
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	98.09
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	98.06
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	98.04
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	98.03
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	98.03
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	98.01
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.01
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	98.01
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	98.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	97.98
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	97.96
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	97.96
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	97.94
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	97.93
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	97.91
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	97.91
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	97.88
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.84
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	97.82
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	97.82
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	97.77
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	97.73
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	97.67
3jro_A	753	Fusion protein of protein transport protein SEC13	97.66
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	97.62
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	97.61
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	97.6
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	97.59
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	97.58
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	97.56
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	97.54
3ow8_A	321	WD repeat-containing protein 61; structural genomi	97.48
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	97.48
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	97.44
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	97.43
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	97.42
3ow8_A	321	WD repeat-containing protein 61; structural genomi	97.39
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	97.32
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	97.32
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	97.31
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	97.28
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.26
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	97.24
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	97.22
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	97.19
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	97.18
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	97.14
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	97.1
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	96.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	96.92
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	96.92
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	96.9
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	96.9
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	96.89
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	96.84
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	96.81
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	96.79
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	96.76
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.75
3jro_A	753	Fusion protein of protein transport protein SEC13	96.72
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	96.69
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	96.62
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	96.6
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	96.58
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	96.58
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	96.55
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	96.52
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	96.48
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	96.41
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	96.41
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	96.4
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	96.4
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	96.35
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	96.33
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	96.29
2pm7_B	297	Protein transport protein SEC13, protein transport	96.25
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	96.25
2pm7_B	297	Protein transport protein SEC13, protein transport	96.2
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	96.16
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	96.08
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	96.02
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	96.02
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	95.99
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	95.97
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	95.88
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	95.87
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	95.87
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	95.75
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	95.73
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	95.7
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	95.63
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	95.5
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	95.45
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	95.43
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	95.35
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	95.27
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	95.14
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	95.01
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	94.89
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	94.82
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	94.67
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	94.08
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	94.03
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	93.93
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	93.82
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	93.73
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	93.62
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	93.49
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	92.97
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	92.94
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	92.79
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	92.74
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	92.73
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	92.64
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	92.56
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	91.74
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	91.23
1k32_A	1045	Tricorn protease; protein degradation, substrate g	91.04
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	91.01
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	90.98
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	90.86
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	90.59
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	90.33
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	90.29
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	90.02
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	90.02
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	89.51
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	89.5
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	88.93
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	88.42
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	88.34
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	87.73
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	87.07
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	85.68
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	84.89
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	84.77
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	84.06
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	83.59
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	83.15
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	82.83
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	82.8
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	81.4
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	81.18
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	81.15
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	81.01
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	80.87
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	80.79

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=98.58  E-value=3.5e-05  Score=69.56  Aligned_cols=94  Identities=11%  Similarity=0.124  Sum_probs=62.3

Q ss_pred             eeeeccCcceeeeeecceEE-EEeecCCCCCceeecccCCCCCCCeEEEEEeEEeCCcEEEEEeccccEEEEEec-CC--
Q 015021           34 NLLCALDMHTIALANRYQTV-IINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDL-KG--  109 (414)
Q Consensus        34 ~~~~sp~~~~la~A~~~~~v-~~~w~~~~~~~v~~~g~l~~~~~e~ITs~~~lpl~dw~~I~VG~ssG~vrfyte-~G--  109 (414)
                      .++.+|++++||.+.....| +-..... .........+.. ....|+++.|.|-.|-..++.|..+|.|++|+. .|  
T Consensus        16 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~-~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~   93 (351)
T 3f3f_A           16 DVVYDFYGRHVATCSSDQHIKVFKLDKD-TSNWELSDSWRA-HDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQE   93 (351)
T ss_dssp             EEEECSSSSEEEEEETTSEEEEEEECSS-SCCEEEEEEEEC-CSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSC
T ss_pred             EEEEcCCCCEEEEeeCCCeEEEEECCCC-CCcceecceecc-CCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcc
Confidence            36678999999988766433 3233222 111222223322 246799999988756678999999999999995 44  


Q ss_pred             -------cEEeecccCccceeEEEEec
Q 015021          110 -------DLVHRQLIHPGRILKLRVRG  129 (414)
Q Consensus       110 -------~LL~sQ~lh~~pV~~ik~r~  129 (414)
                             .++..-.-|..+|..+.+-.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~v~~~~~~~  120 (351)
T 3f3f_A           94 ECSGRRWNKLCTLNDSKGSLYSVKFAP  120 (351)
T ss_dssp             TTSSCSEEEEEEECCCSSCEEEEEECC
T ss_pred             cccccCcceeeeecccCCceeEEEEcC
Confidence                   44555567888999888643

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=98.52  E-value=0.00012  Score=67.53  Aligned_cols=81  Identities=10%  Similarity=0.078  Sum_probs=62.0

Q ss_pred             ceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceee-EEEEEecccccccccccCCCCCcceEEEEEEc
Q 015021          308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCV-FMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA  386 (414)
Q Consensus       308 R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~-wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIya  386 (414)
                      .....++.+|++++++++...|.|.++|+.++..++.++|+.+.... +.... ..+          +      -+++-+
T Consensus       193 ~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----------~------~~l~sg  255 (312)
T 4ery_A          193 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFS-VTG----------G------KWIVSG  255 (312)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEE-CSS----------S------CEEEEC
T ss_pred             CceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEE-eCC----------C------cEEEEE
Confidence            34567899999999999999999999999999999999998874322 11111 100          1      145678


Q ss_pred             CCCCeEEEeeCCCCcceee
Q 015021          387 PRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       387 prRg~lEvW~~~~g~~v~~  405 (414)
                      ..+|.|.||++++++.+.+
T Consensus       256 ~~dg~i~vwd~~~~~~~~~  274 (312)
T 4ery_A          256 SEDNLVYIWNLQTKEIVQK  274 (312)
T ss_dssp             CTTSCEEEEETTTCCEEEE
T ss_pred             CCCCEEEEEECCCchhhhh
Confidence            8999999999999988743

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=98.45  E-value=0.00011  Score=69.05  Aligned_cols=83  Identities=11%  Similarity=-0.002  Sum_probs=62.9

Q ss_pred             ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEE
Q 015021          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL  382 (414)
Q Consensus       303 l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~L  382 (414)
                      +.........++.+|++++++++...|.|.++|+.++..++.++++..    .+....-.+             +.   +
T Consensus       243 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~----~i~~~~~~~-------------~~---~  302 (425)
T 1r5m_A          243 LIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQ----SIVSASWVG-------------DD---K  302 (425)
T ss_dssp             ECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSS----CEEEEEEET-------------TT---E
T ss_pred             eccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCc----cEEEEEECC-------------CC---E
Confidence            344556678999999999999999999999999999999999988766    222211111             11   4


Q ss_pred             EEEcCCCCeEEEeeCCCCcceee
Q 015021          383 AIHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       383 vIyaprRg~lEvW~~~~g~~v~~  405 (414)
                      ++.+..+|.|.+|++++++.+.+
T Consensus       303 l~~~~~d~~i~i~d~~~~~~~~~  325 (425)
T 1r5m_A          303 VISCSMDGSVRLWSLKQNTLLAL  325 (425)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEE
T ss_pred             EEEEeCCCcEEEEECCCCcEeEe
Confidence            45667799999999999987744

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=98.35  E-value=5.5e-05  Score=75.32  Aligned_cols=244  Identities=14%  Similarity=0.146  Sum_probs=142.4

Q ss_pred             CeeeeccCcceeeeeecceEEEEeecCCCCCceeecccCCCCCCCe-EEEEEeEEeCCcEEEEEeccccEEEEEec-CC-
Q 015021           33 PNLLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEY-ITAIEWLVFEEMRALAVGTSRGYFLVYDL-KG-  109 (414)
Q Consensus        33 ~~~~~sp~~~~la~A~~~~~v~~~w~~~~~~~v~~~g~l~~~~~e~-ITs~~~lpl~dw~~I~VG~ssG~vrfyte-~G-  109 (414)
                      ..++.||+|++||++.+..+.+-...... ........+.. ..+. |+++.+-|..|-..++.|..+|.|++|+. +| 
T Consensus        22 ~~~~~spdg~~l~~~~~~~v~v~~~~~~~-~~~~~~~~~~~-h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~   99 (615)
T 1pgu_A           22 THLSYDPTTNAIAYPCGKSAFVRCLDDGD-SKVPPVVQFTG-HGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK   99 (615)
T ss_dssp             CCCEEETTTTEEEEEETTEEEEEECCSSC-CSSCSEEEECT-TTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred             eEEEECCCCCEEEEecCCeEEEEECCCCC-CccccceEEec-CCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCc
Confidence            45789999999999998876664433220 00111122222 2466 99998887657778999999999999996 44 


Q ss_pred             -------cEEeecccCccceeEEEEecccCCCCCCCCCCeEEEEeCC-----eEEEEeChhHHHHHHHHHHhccccccCC
Q 015021          110 -------DLVHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPG-----VLARFDGSEIQKMLQRWFQDSNSNFWDQ  177 (414)
Q Consensus       110 -------~LL~sQ~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ily~~-----~iv~IdG~sL~~~Lr~c~~~~~~~~w~~  177 (414)
                             .++..-.-|..+|..+.+-..         .+.|.+...+     .|.                     .|+.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~---------~~~l~~~~~~~~~~~~v~---------------------~~d~  149 (615)
T 1pgu_A          100 ESNSVEVNVKSEFQVLAGPISDISWDFE---------GRRLCVVGEGRDNFGVFI---------------------SWDS  149 (615)
T ss_dssp             GGTEEEEEEEEEEECCSSCEEEEEECTT---------SSEEEEEECCSSCSEEEE---------------------ETTT
T ss_pred             ccccccccccchhhcccccEEEEEEeCC---------CCEEEEeccCCCCccEEE---------------------EEEC
Confidence                   555555568888888885421         2223333222     111                     1110


Q ss_pred             CCccCCCcccccccCCccceeccc-CCCCCceeeEEeCCCCCCchhhhccccceeEEEeCCCceeEEEEeccCCCcchhh
Q 015021          178 KPKQRDSEDLENSYERLPHQLWNV-SKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVG  256 (414)
Q Consensus       178 ~~~~~~~~~~~~~~~~L~ykKW~l-~~~~~i~Daa~~G~~~p~~~d~~s~~~~~~~i~vG~~P~la~y~~~~~~~~s~~~  256 (414)
                             ..          ....+ ...+.+...++.-            .+.+.+++.+.+-.+-+|......      
T Consensus       150 -------~~----------~~~~~~~~~~~v~~~~~~~------------~~~~~l~~~~~d~~v~vwd~~~~~------  194 (615)
T 1pgu_A          150 -------GN----------SLGEVSGHSQRINACHLKQ------------SRPMRSMTVGDDGSVVFYQGPPFK------  194 (615)
T ss_dssp             -------CC----------EEEECCSCSSCEEEEEECS------------SSSCEEEEEETTTEEEEEETTTBE------
T ss_pred             -------CC----------cceeeecCCccEEEEEECC------------CCCcEEEEEeCCCcEEEEeCCCcc------
Confidence                   00          00001 1122344433321            111124555554444444321110      


Q ss_pred             hhhhhhhHHHHHHhhhhhhhhhcCCCCCCCCCCCCcccccCCCCccccCCCc---eeeEEEECCC-CCEEEEEcCCCcEE
Q 015021          257 AILSKVVPATFSTISSLSKMIWRSEQSPKKSEPKPQSFARASPLTCLKDHPR---KGERLTLSPS-GSLAAITDSLGRIL  332 (414)
Q Consensus       257 al~S~va~av~S~v~S~ak~~W~~~~~~~~~e~kp~~~~~a~pl~~l~D~~R---~~~~i~~sP~-~~laa~tD~lGRV~  332 (414)
                                                                ++..+.....   .+.+++.+|+ ++++++....|.|.
T Consensus       195 ------------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  232 (615)
T 1pgu_A          195 ------------------------------------------FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKIS  232 (615)
T ss_dssp             ------------------------------------------EEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEE
T ss_pred             ------------------------------------------eeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEE
Confidence                                                      1111222333   6889999999 99999999999999


Q ss_pred             EEEcCcceeEeee-c---ccccceeeEEEEEecccccccccccCCCCCcceEEEEEEcCCCCeEEEeeCCCCcceee
Q 015021          333 LLDTQALVVVRLW-K---GYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       333 L~D~~~~~vvrmw-K---GyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEvW~~~~g~~v~~  405 (414)
                      ++|+.++..++.+ +   ++.+    .+....-.+          ++      +++-+-.+|.|.+|++++++.+.+
T Consensus       233 vwd~~~~~~~~~~~~~~~~~~~----~v~~~~~~~----------~~------~l~~~~~d~~i~~wd~~~~~~~~~  289 (615)
T 1pgu_A          233 CFDGKSGEFLKYIEDDQEPVQG----GIFALSWLD----------SQ------KFATVGADATIRVWDVTTSKCVQK  289 (615)
T ss_dssp             EEETTTCCEEEECCBTTBCCCS----CEEEEEESS----------SS------EEEEEETTSEEEEEETTTTEEEEE
T ss_pred             EEECCCCCEeEEecccccccCC----ceEEEEEcC----------CC------EEEEEcCCCcEEEEECCCCcEEEE
Confidence            9999999999998 6   6665    222221111          11      345566789999999999987743

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=98.35  E-value=0.00067  Score=63.11  Aligned_cols=88  Identities=14%  Similarity=0.126  Sum_probs=61.0

Q ss_pred             eeeeccCcceeeeeecceEEEEeecCCCCCceeecccCCCCCCCeEEEEEeEEeCCcEEEEEeccccEEEEEe-cCCcEE
Q 015021           34 NLLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYD-LKGDLV  112 (414)
Q Consensus        34 ~~~~sp~~~~la~A~~~~~v~~~w~~~~~~~v~~~g~l~~~~~e~ITs~~~lpl~dw~~I~VG~ssG~vrfyt-e~G~LL  112 (414)
                      .++.||++.+||.+-...-|.+ |+-.....+   ..+.. ....|+++.+.|  +-..++.|-.+|.|++|+ ++|.++
T Consensus        18 ~~~fsp~~~~l~s~~~dg~v~l-Wd~~~~~~~---~~~~~-~~~~v~~~~~~~--~~~~l~s~s~d~~i~vwd~~~~~~~   90 (304)
T 2ynn_A           18 GIDFHPTEPWVLTTLYSGRVEL-WNYETQVEV---RSIQV-TETPVRAGKFIA--RKNWIIVGSDDFRIRVFNYNTGEKV   90 (304)
T ss_dssp             EEEECSSSSEEEEEETTSEEEE-EETTTTEEE---EEEEC-CSSCEEEEEEEG--GGTEEEEEETTSEEEEEETTTCCEE
T ss_pred             EEEECCCCCEEEEEcCCCcEEE-EECCCCcee---EEeec-cCCcEEEEEEeC--CCCEEEEECCCCEEEEEECCCCcEE
Confidence            4678899999888876654332 554432111   11211 235577776654  556799999999999999 689888


Q ss_pred             eecccCccceeEEEEe
Q 015021          113 HRQLIHPGRILKLRVR  128 (414)
Q Consensus       113 ~sQ~lh~~pV~~ik~r  128 (414)
                      ..-.-|.++|..|.+.
T Consensus        91 ~~~~~h~~~v~~~~~~  106 (304)
T 2ynn_A           91 VDFEAHPDYIRSIAVH  106 (304)
T ss_dssp             EEEECCSSCEEEEEEC
T ss_pred             EEEeCCCCcEEEEEEc
Confidence            8777899999998864

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=98.32  E-value=0.00053  Score=63.56  Aligned_cols=256  Identities=11%  Similarity=0.009  Sum_probs=139.7

Q ss_pred             CeeeeccCcceeeeeecc-eEEEEeecCCCCCceeecccCCCCCCCeEEEEEeEEeCCcEEEEEeccccEEEEEe-cCCc
Q 015021           33 PNLLCALDMHTIALANRY-QTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYD-LKGD  110 (414)
Q Consensus        33 ~~~~~sp~~~~la~A~~~-~~v~~~w~~~~~~~v~~~g~l~~~~~e~ITs~~~lpl~dw~~I~VG~ssG~vrfyt-e~G~  110 (414)
                      ..++.+|++++||++... .+.+-.....   .......+.. ....|+++.|-|  +-..++.|..+|.|++|+ +++.
T Consensus        12 ~~~~~s~~~~~l~~~~~d~~v~i~~~~~~---~~~~~~~~~~-h~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~   85 (372)
T 1k8k_C           12 SCHAWNKDRTQIAICPNNHEVHIYEKSGN---KWVQVHELKE-HNGQVTGVDWAP--DSNRIVTCGTDRNAYVWTLKGRT   85 (372)
T ss_dssp             CEEEECTTSSEEEEECSSSEEEEEEEETT---EEEEEEEEEC-CSSCEEEEEEET--TTTEEEEEETTSCEEEEEEETTE
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEeCCCC---cEEeeeeecC-CCCcccEEEEeC--CCCEEEEEcCCCeEEEEECCCCe
Confidence            357788999999998544 4333222221   1112222322 246799998876  566888999999999999 4665


Q ss_pred             EEeec--ccCccceeEEEEecccCCCCCCCCCCeEEEEeCCe-EEEEeChhHHHHHHHHHHhccccccCCCCccCCCccc
Q 015021          111 LVHRQ--LIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGV-LARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDL  187 (414)
Q Consensus       111 LL~sQ--~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ily~~~-iv~IdG~sL~~~Lr~c~~~~~~~~w~~~~~~~~~~~~  187 (414)
                      +....  .-|..+|..+.+...         .+.|.+...+. +...|-.              .+       .    . 
T Consensus        86 ~~~~~~~~~~~~~v~~~~~~~~---------~~~l~~~~~d~~v~i~d~~--------------~~-------~----~-  130 (372)
T 1k8k_C           86 WKPTLVILRINRAARCVRWAPN---------EKKFAVGSGSRVISICYFE--------------QE-------N----D-  130 (372)
T ss_dssp             EEEEEECCCCSSCEEEEEECTT---------SSEEEEEETTSSEEEEEEE--------------TT-------T----T-
T ss_pred             eeeeEEeecCCCceeEEEECCC---------CCEEEEEeCCCEEEEEEec--------------CC-------C----c-
Confidence            44433  346788888875421         23344443332 2211100              00       0    0 


Q ss_pred             ccccCCccceecccCCCCCceeeEEeCCCCCCchhhhccccceeEEEeCCCceeEEEEeccCCCcchhhhhhhhhhHHHH
Q 015021          188 ENSYERLPHQLWNVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVGAILSKVVPATF  267 (414)
Q Consensus       188 ~~~~~~L~ykKW~l~~~~~i~Daa~~G~~~p~~~d~~s~~~~~~~i~vG~~P~la~y~~~~~~~~s~~~al~S~va~av~  267 (414)
                         .  ...+.-.......+.+.++.-            ++.+ +++.+.+-.+-+|.........           .  
T Consensus       131 ---~--~~~~~~~~~~~~~i~~~~~~~------------~~~~-l~~~~~dg~i~~~d~~~~~~~~-----------~--  179 (372)
T 1k8k_C          131 ---W--WVCKHIKKPIRSTVLSLDWHP------------NSVL-LAAGSCDFKCRIFSAYIKEVEE-----------R--  179 (372)
T ss_dssp             ---E--EEEEEECTTCCSCEEEEEECT------------TSSE-EEEEETTSCEEEEECCCTTTSC-----------C--
T ss_pred             ---c--eeeeeeecccCCCeeEEEEcC------------CCCE-EEEEcCCCCEEEEEcccccccc-----------c--
Confidence               0  000000011123344444421            1111 4455555555555432211000           0  


Q ss_pred             HHhhhhhhhhhcCCCCCCCCCCCCcccccCCCCccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecc
Q 015021          268 STISSLSKMIWRSEQSPKKSEPKPQSFARASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKG  347 (414)
Q Consensus       268 S~v~S~ak~~W~~~~~~~~~e~kp~~~~~a~pl~~l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKG  347 (414)
                          .. ...|+..        .+    ...++..+........+++.+|++++++++...|+|.++|+.++..++.+++
T Consensus       180 ----~~-~~~~~~~--------~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  242 (372)
T 1k8k_C          180 ----PA-PTPWGSK--------MP----FGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS  242 (372)
T ss_dssp             ----CC-CBTTBSC--------CC----TTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC
T ss_pred             ----cc-ccccccc--------cc----hhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEcc
Confidence                00 0122111        00    0123334666777889999999999999999999999999999999999998


Q ss_pred             cccc--eeeEEEEEecccccccccccCCCCCcceEEEEEEcCCCCeEEEeeCCC
Q 015021          348 YRDA--SCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEHLAGMA  399 (414)
Q Consensus       348 yRdA--q~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEvW~~~~  399 (414)
                      +...  .+.|.      ++             .. +|+ -+ .+|.|.+|+++.
T Consensus       243 ~~~~v~~~~~~------~~-------------~~-~l~-~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          243 ETLPLLAVTFI------TE-------------SS-LVA-AG-HDCFPVLFTYDS  274 (372)
T ss_dssp             SSCCEEEEEEE------ET-------------TE-EEE-EE-TTSSCEEEEEET
T ss_pred             CCCCeEEEEEe------cC-------------CC-EEE-EE-eCCeEEEEEccC
Confidence            8652  12221      10             01 333 33 899999999998

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=98.28  E-value=0.00029  Score=64.84  Aligned_cols=272  Identities=9%  Similarity=0.028  Sum_probs=143.3

Q ss_pred             eeeccC----cceeeeeecceEEEEeecCCCCCceeecccCCCCCCCeEEEEEeEEeCCcEEEEEeccccEEEEEec-CC
Q 015021           35 LLCALD----MHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDL-KG  109 (414)
Q Consensus        35 ~~~sp~----~~~la~A~~~~~v~~~w~~~~~~~v~~~g~l~~~~~e~ITs~~~lpl~dw~~I~VG~ssG~vrfyte-~G  109 (414)
                      ++.+|+    +.+|+.+.....|. -|+-.....+   ..+.. ....|+++.|-|- +-..++.|..+|.|++|+. +|
T Consensus        75 ~~~~~~~~~~~~~l~~~~~dg~i~-v~d~~~~~~~---~~~~~-~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~  148 (366)
T 3k26_A           75 CAWTYDSNTSHPLLAVAGSRGIIR-IINPITMQCI---KHYVG-HGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTD  148 (366)
T ss_dssp             EEEEECTTTCCEEEEEEETTCEEE-EECTTTCCEE---EEEES-CCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTTT
T ss_pred             EEeccCCCCCCCEEEEecCCCEEE-EEEchhceEe---eeecC-CCCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecC
Confidence            445566    55666666554322 2443321111   11221 2467999888763 5568899999999999994 67


Q ss_pred             cEEeec---ccCccceeEEEEecccCCCCCCCCCCeEEEEeCC-eEEEEeChh--HHHHHHHHHHhccccccCCCCccCC
Q 015021          110 DLVHRQ---LIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPG-VLARFDGSE--IQKMLQRWFQDSNSNFWDQKPKQRD  183 (414)
Q Consensus       110 ~LL~sQ---~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ily~~-~iv~IdG~s--L~~~Lr~c~~~~~~~~w~~~~~~~~  183 (414)
                      ..+..-   .-|..+|..+.+...         .+.|.....+ .|...|-..  ....++..   ..-.        .+
T Consensus       149 ~~~~~~~~~~~~~~~v~~~~~~~~---------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~--------~~  208 (366)
T 3k26_A          149 TLVAIFGGVEGHRDEVLSADYDLL---------GEKIMSCGMDHSLKLWRINSKRMMNAIKES---YDYN--------PN  208 (366)
T ss_dssp             EEEEEECSTTSCSSCEEEEEECTT---------SSEEEEEETTSCEEEEESCSHHHHHHHHHH---HTCC--------GG
T ss_pred             eEEEEecccccccCceeEEEECCC---------CCEEEEecCCCCEEEEECCCCcccccccee---EEec--------CC
Confidence            666654   468999999986431         3345555444 465555443  33333321   1100        00


Q ss_pred             CcccccccCCccceecccC--CCCCceeeEEeCCCCCCchhhhccccceeEEEeCCCceeEEEEeccCCCcchhhhhhhh
Q 015021          184 SEDLENSYERLPHQLWNVS--KYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVGAILSK  261 (414)
Q Consensus       184 ~~~~~~~~~~L~ykKW~l~--~~~~i~Daa~~G~~~p~~~d~~s~~~~~~~i~vG~~P~la~y~~~~~~~~s~~~al~S~  261 (414)
                      ...............+...  ..+.+...++.|              . .+++.+.+-.+-+|........      .  
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------------~-~l~~~~~d~~i~~wd~~~~~~~------~--  265 (366)
T 3k26_A          209 KTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLG--------------D-LILSKSCENAIVCWKPGKMEDD------I--  265 (366)
T ss_dssp             GCSSCCCCEEECCCSEEECSSCSSCCCEEEEET--------------T-EEEEECSSSEEEEEEESSTTCC------G--
T ss_pred             CCcccccceeeccCccccccCCcceEEEEEEcC--------------C-EEEEEecCCEEEEEeCCCcccc------c--
Confidence            0000000000111111111  223444444431              1 1566666777766655433221      0  


Q ss_pred             hhHHHHHHhhhhhhhhhcCCCCCCCCCCCCcccccCCCCccccCCCceeeEEEECCC--CCEEEEEcCCCcEEEEEcCcc
Q 015021          262 VVPATFSTISSLSKMIWRSEQSPKKSEPKPQSFARASPLTCLKDHPRKGERLTLSPS--GSLAAITDSLGRILLLDTQAL  339 (414)
Q Consensus       262 va~av~S~v~S~ak~~W~~~~~~~~~e~kp~~~~~a~pl~~l~D~~R~~~~i~~sP~--~~laa~tD~lGRV~L~D~~~~  339 (414)
                               ..+           ......      ..++..+......+..++.+|+  ++++|+.+..|.|.++|+.++
T Consensus       266 ---------~~~-----------~~~~~~------~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~  319 (366)
T 3k26_A          266 ---------DKI-----------KPSESN------VTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVE  319 (366)
T ss_dssp             ---------GGC-----------CTTCCC------EEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSS
T ss_pred             ---------ccc-----------ccCCcc------hheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCC
Confidence                     000           000000      1122334555556777888888  999999999999999999998


Q ss_pred             e----eEeeecccc-cceeeEEEEEecccccccccccCCCCCcceEEEEEEcCCCCeEEEeeCCC
Q 015021          340 V----VVRLWKGYR-DASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEHLAGMA  399 (414)
Q Consensus       340 ~----vvrmwKGyR-dAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEvW~~~~  399 (414)
                      .    .+..+++++ ...+.-+...   ++         ++      +++-+-.+|.|.||++++
T Consensus       320 ~~~~~~~~~~~~~~~~~~v~~~~~s---~~---------~~------~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          320 DPHKAKCTTLTHHKCGAAIRQTSFS---RD---------SS------ILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             SGGGCEEEEECCTTCCSCEEEEEEC---TT---------SS------EEEEEETTSEEEEEEC--
T ss_pred             CCccccceEEcccccCCceEEEEeC---CC---------CC------eEEEEeCCCEEEEEEecC
Confidence            6    445788875 2222222221   11         11      445677899999999864

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=98.24  E-value=0.00076  Score=60.76  Aligned_cols=235  Identities=8%  Similarity=0.053  Sum_probs=134.0

Q ss_pred             eeeeccCcceeeeeecceEEE-Ee-ecCCCCCceeecccCCCCCCCeEEEEEeEEeCCcEEEEEeccccEEEEEecCCcE
Q 015021           34 NLLCALDMHTIALANRYQTVI-IN-WADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDL  111 (414)
Q Consensus        34 ~~~~sp~~~~la~A~~~~~v~-~~-w~~~~~~~v~~~g~l~~~~~e~ITs~~~lpl~dw~~I~VG~ssG~vrfyte~G~L  111 (414)
                      .++.+|+++.|+.+.....+. -. |..... .  ....+.. ....|+++.+    +...+++|..+|.|++|+ .+..
T Consensus        64 ~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~-~--~~~~~~~-~~~~i~~~~~----~~~~l~~~~~d~~i~~~d-~~~~  134 (313)
T 3odt_A           64 SVCYDSEKELLLFGGKDTMINGVPLFATSGE-D--PLYTLIG-HQGNVCSLSF----QDGVVISGSWDKTAKVWK-EGSL  134 (313)
T ss_dssp             EEEEETTTTEEEEEETTSCEEEEETTCCTTS-C--C-CEECC-CSSCEEEEEE----ETTEEEEEETTSEEEEEE-TTEE
T ss_pred             EEEECCCCCEEEEecCCCeEEEEEeeecCCC-C--cccchhh-cccCEEEEEe----cCCEEEEEeCCCCEEEEc-CCcE
Confidence            356778888888776664432 22 222211 1  1111222 2466888776    455899999999999999 7888


Q ss_pred             EeecccCccceeEEEEecccCCCCCCCCCCeEEEEeCCe-EEEEeChhHHHHHHHHHHhccccccCCCCccCCCcccccc
Q 015021          112 VHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGV-LARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDLENS  190 (414)
Q Consensus       112 L~sQ~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ily~~~-iv~IdG~sL~~~Lr~c~~~~~~~~w~~~~~~~~~~~~~~~  190 (414)
                      +.....|..+|..+.+-...        .+.+.....+. +...|..              +.                 
T Consensus       135 ~~~~~~~~~~v~~~~~~~~~--------~~~l~~~~~d~~i~i~d~~--------------~~-----------------  175 (313)
T 3odt_A          135 VYNLQAHNASVWDAKVVSFS--------ENKFLTASADKTIKLWQND--------------KV-----------------  175 (313)
T ss_dssp             EEEEECCSSCEEEEEEEETT--------TTEEEEEETTSCEEEEETT--------------EE-----------------
T ss_pred             EEecccCCCceeEEEEccCC--------CCEEEEEECCCCEEEEecC--------------ce-----------------
Confidence            88888899999988865422        22344444332 4333300              00                 


Q ss_pred             cCCccceecccCCCCCceeeEEeCCCCCCchhhhccccceeEEEeCCCceeEEEEeccCCCcchhhhhhhhhhHHHHHHh
Q 015021          191 YERLPHQLWNVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVGAILSKVVPATFSTI  270 (414)
Q Consensus       191 ~~~L~ykKW~l~~~~~i~Daa~~G~~~p~~~d~~s~~~~~~~i~vG~~P~la~y~~~~~~~~s~~~al~S~va~av~S~v  270 (414)
                           .+.+.......+...++.-            .+.  +++.+.+-.+-+|.....                     
T Consensus       176 -----~~~~~~~~~~~i~~~~~~~------------~~~--~~~~~~dg~i~i~d~~~~---------------------  215 (313)
T 3odt_A          176 -----IKTFSGIHNDVVRHLAVVD------------DGH--FISCSNDGLIKLVDMHTG---------------------  215 (313)
T ss_dssp             -----EEEECSSCSSCEEEEEEEE------------TTE--EEEEETTSEEEEEETTTC---------------------
T ss_pred             -----EEEEeccCcccEEEEEEcC------------CCe--EEEccCCCeEEEEECCch---------------------
Confidence                 0001111122333333320            111  344444444433322111                     


Q ss_pred             hhhhhhhhcCCCCCCCCCCCCcccccCCCCccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeeccccc
Q 015021          271 SSLSKMIWRSEQSPKKSEPKPQSFARASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRD  350 (414)
Q Consensus       271 ~S~ak~~W~~~~~~~~~e~kp~~~~~a~pl~~l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRd  350 (414)
                                                 .++..+......+.+++.+|+|+ ++++...|+|.++|+.++..++.++++.+
T Consensus       216 ---------------------------~~~~~~~~~~~~i~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~  267 (313)
T 3odt_A          216 ---------------------------DVLRTYEGHESFVYCIKLLPNGD-IVSCGEDRTVRIWSKENGSLKQVITLPAI  267 (313)
T ss_dssp             ---------------------------CEEEEEECCSSCEEEEEECTTSC-EEEEETTSEEEEECTTTCCEEEEEECSSS
T ss_pred             ---------------------------hhhhhhhcCCceEEEEEEecCCC-EEEEecCCEEEEEECCCCceeEEEeccCc
Confidence                                       01122334445678999999996 55667889999999999999999988865


Q ss_pred             ceeeEEEEEecccccccccccCCCCCcceEEEEEEcCCCCeEEEeeCCCCccee
Q 015021          351 ASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEHLAGMADENWT  404 (414)
Q Consensus       351 Aq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEvW~~~~g~~v~  404 (414)
                      .    +....-.++            ..  ++  -+-.+|.|.||++++++.+.
T Consensus       268 ~----i~~~~~~~~------------~~--~~--~~~~dg~i~iw~~~~~~~~~  301 (313)
T 3odt_A          268 S----IWSVDCMSN------------GD--II--VGSSDNLVRIFSQEKSRWAS  301 (313)
T ss_dssp             C----EEEEEECTT------------SC--EE--EEETTSCEEEEESCGGGCCC
T ss_pred             e----EEEEEEccC------------CC--EE--EEeCCCcEEEEeCCCCceee
Confidence            2    222111111            11  33  37789999999999988763

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=98.23  E-value=0.00056  Score=68.14  Aligned_cols=236  Identities=13%  Similarity=0.199  Sum_probs=134.0

Q ss_pred             eeeccCcceeeeeecceEEEEeecCCCCCceeecccCCCCCCCeEEEEEeEEeCCcEEEEEeccccEEEEEecCCcEEee
Q 015021           35 LLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVHR  114 (414)
Q Consensus        35 ~~~sp~~~~la~A~~~~~v~~~w~~~~~~~v~~~g~l~~~~~e~ITs~~~lpl~dw~~I~VG~ssG~vrfyte~G~LL~s  114 (414)
                      ++.+|+++.|+.+.....+- -|+.....-..    +.. ..+.|+++.+-  ||...++.|..+|.|++|+.+|.++..
T Consensus       309 ~~~~~~~~~l~t~~~d~~i~-~w~~~~~~~~~----~~~-~~~~v~~~~~s--~~g~~l~~~~~dg~v~~~~~~~~~~~~  380 (577)
T 2ymu_A          309 VAFSPDGQTIASASDDKTVK-LWNRNGQHLQT----LTG-HSSSVWGVAFS--PDGQTIASASDDKTVKLWNRNGQLLQT  380 (577)
T ss_dssp             EEECTTSSEEEEEETTSCEE-EEETTSCEEEE----ECC-CSSCEEEEEEC--TTSSEEEEEETTSEEEEEETTCCEEEE
T ss_pred             EEECCCCCEEEEEeCCCeEE-EEeCCCCeeEE----EeC-CCCCEEEEEEC--CCCCEEEEEeCCCEEEEEcCCCCEEEE
Confidence            56778888877766554322 25443321111    212 24567776543  577789999999999999999999988


Q ss_pred             cccCccceeEEEEecccCCCCCCCCCCeEEEEeCCeEEEEeChhHHHHHHHHHHhccccccCCCCccCCCcccccccCCc
Q 015021          115 QLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGVLARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDLENSYERL  194 (414)
Q Consensus       115 Q~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ily~~~iv~IdG~sL~~~Lr~c~~~~~~~~w~~~~~~~~~~~~~~~~~~L  194 (414)
                      -.-|..+|..|.+-..         .+-|.....+..++|                    |+. .   +  .  . ...+
T Consensus       381 ~~~~~~~v~~~~~s~d---------g~~l~~~~~d~~v~~--------------------~~~-~---~--~--~-~~~~  422 (577)
T 2ymu_A          381 LTGHSSSVRGVAFSPD---------GQTIASASDDKTVKL--------------------WNR-N---G--Q--L-LQTL  422 (577)
T ss_dssp             EECCSSCEEEEEECTT---------SSCEEEEETTSEEEE--------------------ECT-T---C--C--E-EEEE
T ss_pred             ecCCCCCeEEEEECCC---------CCEEEEEeCCCEEEE--------------------EeC-C---C--C--E-EEEe
Confidence            8889999998875321         223444444332222                    110 0   0  0  0 0000


Q ss_pred             cceecccCCCCCceeeEEeCCCCCCchhhhccccceeEEEeCCCceeEEEEeccCCCcchhhhhhhhhhHHHHHHhhhhh
Q 015021          195 PHQLWNVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVGAILSKVVPATFSTISSLS  274 (414)
Q Consensus       195 ~ykKW~l~~~~~i~Daa~~G~~~p~~~d~~s~~~~~~~i~vG~~P~la~y~~~~~~~~s~~~al~S~va~av~S~v~S~a  274 (414)
                            -.....+.+.++.    |        ++.+ +++++.+-.+-                                
T Consensus       423 ------~~~~~~v~~~~~s----~--------d~~~-l~~~~~d~~v~--------------------------------  451 (577)
T 2ymu_A          423 ------TGHSSSVWGVAFS----P--------DDQT-IASASDDKTVK--------------------------------  451 (577)
T ss_dssp             ------ECCSSCEEEEEEC----T--------TSSE-EEEEETTSEEE--------------------------------
T ss_pred             ------cCCCCCeEEEEEC----C--------CCCE-EEEEcCCCEEE--------------------------------
Confidence                  0011233333331    0        1111 22222222222                                


Q ss_pred             hhhhcCCCCCCCCCCCCcccccCCCCccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceee
Q 015021          275 KMIWRSEQSPKKSEPKPQSFARASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCV  354 (414)
Q Consensus       275 k~~W~~~~~~~~~e~kp~~~~~a~pl~~l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~  354 (414)
                        .|..+.               ..+..+.........++.+|+++++|++...|.|.++|. ++..++.++|+.+.   
T Consensus       452 --~w~~~~---------------~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~---  510 (577)
T 2ymu_A          452 --LWNRNG---------------QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSS---  510 (577)
T ss_dssp             --EEETTS---------------CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSC---
T ss_pred             --EEECCC---------------CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCC---
Confidence              331110               011224445566788999999999999999999999995 78889999998763   


Q ss_pred             EEEEEecccccccccccCCCCCcceEEEEEEcCCCCeEEEeeCCCCcceee
Q 015021          355 FMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       355 wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEvW~~~~g~~v~~  405 (414)
                       +....-.+++         +      +++-+-.+|.|.||+. +|+++.+
T Consensus       511 -v~~l~~s~dg---------~------~l~s~~~dg~v~lwd~-~~~~~~~  544 (577)
T 2ymu_A          511 -VRGVAFSPDG---------Q------TIASASDDKTVKLWNR-NGQLLQT  544 (577)
T ss_dssp             -EEEEEECTTS---------S------CEEEEETTSEEEEECT-TSCEEEE
T ss_pred             -EEEEEEcCCC---------C------EEEEEECcCEEEEEeC-CCCEEEE
Confidence             3222111111         1      2345778999999995 6777754

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=98.23  E-value=0.00024  Score=73.28  Aligned_cols=85  Identities=16%  Similarity=0.080  Sum_probs=65.4

Q ss_pred             cccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeec-------ccccceeeEEEEEecccccccccccCCC
Q 015021          302 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWK-------GYRDASCVFMEMLVNKDAATSSAYYAPV  374 (414)
Q Consensus       302 ~l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwK-------GyRdAq~~wi~~~~~~~~~~~~~~~~~~  374 (414)
                      .|..+...+.+++.+|+|+++|++...|.|.|+|+.++..++.++       |+.+    ++....-.+++         
T Consensus       185 ~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~----~V~~v~~spdg---------  251 (611)
T 1nr0_A          185 TFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSG----SVFGLTWSPDG---------  251 (611)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSS----CEEEEEECTTS---------
T ss_pred             eeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCC----CEEEEEECCCC---------
Confidence            355667788999999999999999999999999999999999884       6665    34332211111         


Q ss_pred             CCcceEEEEEEcCCCCeEEEeeCCCCcceee
Q 015021          375 KSDYCLCLAIHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       375 k~~~~l~LvIyaprRg~lEvW~~~~g~~v~~  405 (414)
                      +      +++-+..+|.|.||++++|+++.+
T Consensus       252 ~------~l~s~s~D~~v~lWd~~~~~~~~~  276 (611)
T 1nr0_A          252 T------KIASASADKTIKIWNVATLKVEKT  276 (611)
T ss_dssp             S------EEEEEETTSEEEEEETTTTEEEEE
T ss_pred             C------EEEEEeCCCeEEEEeCCCCceeee
Confidence            1      346678899999999999987754

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=98.20  E-value=4e-05  Score=76.45  Aligned_cols=87  Identities=16%  Similarity=0.243  Sum_probs=65.1

Q ss_pred             eeeeccCcceeeeeecceEEEEeecCCCCCceeecccCCCCCCCeEEEEEeEEeCCcEEEEEeccccEEEEEecCCcEEe
Q 015021           34 NLLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVH  113 (414)
Q Consensus        34 ~~~~sp~~~~la~A~~~~~v~~~w~~~~~~~v~~~g~l~~~~~e~ITs~~~lpl~dw~~I~VG~ssG~vrfyte~G~LL~  113 (414)
                      .++.||+|.+||.+-+...|.+ |+..++.--++.|-     ...|+++.+-  ||-..++.|-.+|.|++|+.+|.++.
T Consensus        21 ~~a~spdg~~las~~~d~~v~i-Wd~~~~~~~~l~gh-----~~~V~~l~fs--pdg~~las~~~d~~i~vWd~~~~~~~   92 (577)
T 2ymu_A           21 GVAFSPDGQTIASASDDKTVKL-WNRNGQLLQTLTGH-----SSSVWGVAFS--PDGQTIASASDDKTVKLWNRNGQLLQ   92 (577)
T ss_dssp             EEEECTTSSCEEEEETTSEEEE-ECTTSCEEEEEECC-----SSCEEEEEEC--TTSSEEEEEETTSCEEEEETTSCEEE
T ss_pred             EEEECCCCCEEEEEeCCCEEEE-EECCCCEEEEEeCC-----CCCEEEEEEC--CCCCEEEEEeCCCEEEEEECCCCEEE
Confidence            4778999999999877765433 76443211233332     3568887665  47778888999999999999999998


Q ss_pred             ecccCccceeEEEEe
Q 015021          114 RQLIHPGRILKLRVR  128 (414)
Q Consensus       114 sQ~lh~~pV~~ik~r  128 (414)
                      .-.-|..+|..+.+-
T Consensus        93 ~~~~~~~~v~~~~~s  107 (577)
T 2ymu_A           93 TLTGHSSSVRGVAFS  107 (577)
T ss_dssp             EECCCSSCEEEEEEC
T ss_pred             EEECCCCCEEEEEEC
Confidence            888899999998863

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=98.19  E-value=0.0009  Score=64.73  Aligned_cols=81  Identities=9%  Similarity=0.060  Sum_probs=57.5

Q ss_pred             CCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcc------------eeEeeecccccceeeEEEEEecccccccccccCC
Q 015021          306 HPRKGERLTLSPSGSLAAITDSLGRILLLDTQAL------------VVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAP  373 (414)
Q Consensus       306 ~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~------------~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~  373 (414)
                      +...+.+++.+|+|++++++...|.|.|+|+.++            .....+.|+.+    ++....-.+++        
T Consensus       255 h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~----~v~~~~~~~~~--------  322 (393)
T 1erj_A          255 HKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD----FVLSVATTQND--------  322 (393)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSS----CEEEEEECGGG--------
T ss_pred             CCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccC----cEEEEEECCCC--------
Confidence            3456788999999999999999999999999864            44566777776    44333221111        


Q ss_pred             CCCcceEEEEEEcCCCCeEEEeeCCCCcceee
Q 015021          374 VKSDYCLCLAIHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       374 ~k~~~~l~LvIyaprRg~lEvW~~~~g~~v~~  405 (414)
                             -+++-+..+|.|.+|++++|+.+.+
T Consensus       323 -------~~l~sgs~D~~v~iwd~~~~~~~~~  347 (393)
T 1erj_A          323 -------EYILSGSKDRGVLFWDKKSGNPLLM  347 (393)
T ss_dssp             -------CEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             -------CEEEEEeCCCeEEEEECCCCeEEEE
Confidence                   1445677899999999999987743

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=98.16  E-value=0.00057  Score=64.65  Aligned_cols=84  Identities=13%  Similarity=0.085  Sum_probs=64.8

Q ss_pred             ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEE
Q 015021          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL  382 (414)
Q Consensus       303 l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~L  382 (414)
                      +..+...+.+++.+|++++++++...|.|.++|+.++..++.++|+.+    .+....-.+++         +      +
T Consensus       180 ~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~----~v~~v~~~p~~---------~------~  240 (340)
T 1got_B          180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES----DINAICFFPNG---------N------A  240 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSS----CEEEEEECTTS---------S------E
T ss_pred             EcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcC----CEEEEEEcCCC---------C------E
Confidence            444556688999999999999999999999999999999999999987    33332211111         1      3


Q ss_pred             EEEcCCCCeEEEeeCCCCcceee
Q 015021          383 AIHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       383 vIyaprRg~lEvW~~~~g~~v~~  405 (414)
                      ++-+..+|.|.||++++++.+.+
T Consensus       241 l~s~s~d~~v~iwd~~~~~~~~~  263 (340)
T 1got_B          241 FATGSDDATCRLFDLRADQELMT  263 (340)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEE
T ss_pred             EEEEcCCCcEEEEECCCCcEEEE
Confidence            45677899999999999887643

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=98.13  E-value=0.0014  Score=60.56  Aligned_cols=92  Identities=12%  Similarity=0.133  Sum_probs=60.4

Q ss_pred             eeeeccCcceeeeeecce-EEEEeecCCCCCceeecccCCCCCCCeEEEEEeEEeCCcEEEEEeccccEEEEEec-CCc-
Q 015021           34 NLLCALDMHTIALANRYQ-TVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDL-KGD-  110 (414)
Q Consensus        34 ~~~~sp~~~~la~A~~~~-~v~~~w~~~~~~~v~~~g~l~~~~~e~ITs~~~lpl~dw~~I~VG~ssG~vrfyte-~G~-  110 (414)
                      .++.+|++++||.+.... +.+-......   ......+.. ....|+++.|.|-.+-..++.|..+|.|++|+. +|. 
T Consensus        16 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~   91 (379)
T 3jrp_A           16 DAVLDYYGKRLATCSSDKTIKIFEVEGET---HKLIDTLTG-HEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW   91 (379)
T ss_dssp             EEEECSSSSEEEEEETTSCEEEEEEETTE---EEEEEEECC-CSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEE
T ss_pred             EEEEcCCCCEEEEEECCCcEEEEecCCCc---ceeeeEecC-CCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCce
Confidence            366789999999886553 3332222111   111122222 246799998876544678999999999999994 565 


Q ss_pred             -EEeecccCccceeEEEEec
Q 015021          111 -LVHRQLIHPGRILKLRVRG  129 (414)
Q Consensus       111 -LL~sQ~lh~~pV~~ik~r~  129 (414)
                       .+....-|..+|..+.+..
T Consensus        92 ~~~~~~~~~~~~v~~~~~~~  111 (379)
T 3jrp_A           92 SQIAVHAVHSASVNSVQWAP  111 (379)
T ss_dssp             EEEEEECCCSSCEEEEEECC
T ss_pred             eEeeeecCCCcceEEEEeCC
Confidence             5555566889999998643

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=98.11  E-value=0.00077  Score=61.88  Aligned_cols=84  Identities=12%  Similarity=-0.023  Sum_probs=61.3

Q ss_pred             CceeeEEEECC-CCCEEEEEcCCCcEEEEEcCcc------eeEeeecccccce-----eeEEEEEecccccccccccCCC
Q 015021          307 PRKGERLTLSP-SGSLAAITDSLGRILLLDTQAL------VVVRLWKGYRDAS-----CVFMEMLVNKDAATSSAYYAPV  374 (414)
Q Consensus       307 ~R~~~~i~~sP-~~~laa~tD~lGRV~L~D~~~~------~vvrmwKGyRdAq-----~~wi~~~~~~~~~~~~~~~~~~  374 (414)
                      +....+|+.+| ++++++++...|+|.++|+...      ..++.+++++.-.     .+.+....-.++         +
T Consensus       193 ~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---------~  263 (342)
T 1yfq_A          193 KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPR---------H  263 (342)
T ss_dssp             SSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTT---------T
T ss_pred             CCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCC---------C
Confidence            34578899999 9999999999999999999887      8888999987621     123322211111         1


Q ss_pred             CCcceEEEEEEcCCCCeEEEeeCCCCcceee
Q 015021          375 KSDYCLCLAIHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       375 k~~~~l~LvIyaprRg~lEvW~~~~g~~v~~  405 (414)
                        .    +++-+-.+|.|.||++++|+++.+
T Consensus       264 --~----~l~~~~~dg~i~vwd~~~~~~~~~  288 (342)
T 1yfq_A          264 --K----FLYTAGSDGIISCWNLQTRKKIKN  288 (342)
T ss_dssp             --C----CEEEEETTSCEEEEETTTTEEEEE
T ss_pred             --C----EEEEecCCceEEEEcCccHhHhhh
Confidence              1    234566799999999999998855

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=98.11  E-value=0.0013  Score=60.38  Aligned_cols=79  Identities=10%  Similarity=-0.075  Sum_probs=60.6

Q ss_pred             ceeeEEEECCCCCEEEEEcCCCcEEEEEcCc-ceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEEEc
Q 015021          308 RKGERLTLSPSGSLAAITDSLGRILLLDTQA-LVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA  386 (414)
Q Consensus       308 R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~-~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIya  386 (414)
                      .....++.+|+++++++++..|.|.++|+.+ +..++..+++.+    .+....-.+++            .   +++.+
T Consensus       176 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----~v~~~~~~~~~------------~---~l~~~  236 (369)
T 3zwl_B          176 DAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEK----SISDMQFSPDL------------T---YFITS  236 (369)
T ss_dssp             CCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSS----CEEEEEECTTS------------S---EEEEE
T ss_pred             cceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCC----ceeEEEECCCC------------C---EEEEe
Confidence            3788999999999999999999999999999 899999988766    22222111111            1   34566


Q ss_pred             CCCCeEEEeeCCCCcceee
Q 015021          387 PRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       387 prRg~lEvW~~~~g~~v~~  405 (414)
                      -.+|.|.+|++++++.+.+
T Consensus       237 ~~d~~i~v~d~~~~~~~~~  255 (369)
T 3zwl_B          237 SRDTNSFLVDVSTLQVLKK  255 (369)
T ss_dssp             ETTSEEEEEETTTCCEEEE
T ss_pred             cCCceEEEEECCCCceeee
Confidence            7899999999999988743

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=98.10  E-value=0.0015  Score=63.85  Aligned_cols=70  Identities=7%  Similarity=0.057  Sum_probs=53.2

Q ss_pred             CCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEEEcCCCCeEEEee
Q 015021          317 PSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEHLA  396 (414)
Q Consensus       317 P~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEvW~  396 (414)
                      +.|.++++....|.|.++|+.++..++.++|+.+    |+....-.+++           .    +++-+..+|.|.||+
T Consensus       306 ~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~----~v~~v~~~~~g-----------~----~l~s~s~D~~i~vwd  366 (410)
T 1vyh_C          306 KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN----WVRGVLFHSGG-----------K----FILSCADDKTLRVWD  366 (410)
T ss_dssp             --CCEEEEEETTSEEEEEETTTTEEEEEEECCSS----CEEEEEECSSS-----------S----CEEEEETTTEEEEEC
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCceEEEEECCCC----cEEEEEEcCCC-----------C----EEEEEeCCCeEEEEE
Confidence            3478899999999999999999999999999987    55443222111           1    335677899999999


Q ss_pred             CCCCcceee
Q 015021          397 GMADENWTT  405 (414)
Q Consensus       397 ~~~g~~v~~  405 (414)
                      +++++++.+
T Consensus       367 ~~~~~~~~~  375 (410)
T 1vyh_C          367 YKNKRCMKT  375 (410)
T ss_dssp             CTTSCCCEE
T ss_pred             CCCCceEEE
Confidence            999988754

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=98.09  E-value=0.0015  Score=68.00  Aligned_cols=88  Identities=15%  Similarity=0.144  Sum_probs=62.1

Q ss_pred             eeeeccCcceeeeeecceEEEEeecCCCCCceeecccCCCCCCCeEEEEEeEEeCCcEEEEEeccccEEEEEe-cCCcEE
Q 015021           34 NLLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYD-LKGDLV  112 (414)
Q Consensus        34 ~~~~sp~~~~la~A~~~~~v~~~w~~~~~~~v~~~g~l~~~~~e~ITs~~~lpl~dw~~I~VG~ssG~vrfyt-e~G~LL  112 (414)
                      .++.||++..||++..+..|.+ |+-.....+.   .+.. ....|+++.|-|  |-..+++|..+|.|++|+ .+|..+
T Consensus        18 ~i~~sp~~~~la~~~~~g~v~i-wd~~~~~~~~---~~~~-~~~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~   90 (814)
T 3mkq_A           18 GIDFHPTEPWVLTTLYSGRVEI-WNYETQVEVR---SIQV-TETPVRAGKFIA--RKNWIIVGSDDFRIRVFNYNTGEKV   90 (814)
T ss_dssp             EEEECSSSSEEEEEETTSEEEE-EETTTTEEEE---EEEC-CSSCEEEEEEEG--GGTEEEEEETTSEEEEEETTTCCEE
T ss_pred             EEEECCCCCEEEEEeCCCEEEE-EECCCCceEE---EEec-CCCcEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEE
Confidence            4788999999999987643332 4433211111   1111 246689888876  556789999999999999 688888


Q ss_pred             eecccCccceeEEEEe
Q 015021          113 HRQLIHPGRILKLRVR  128 (414)
Q Consensus       113 ~sQ~lh~~pV~~ik~r  128 (414)
                      ..-.-|.++|..+.+.
T Consensus        91 ~~~~~~~~~v~~~~~s  106 (814)
T 3mkq_A           91 VDFEAHPDYIRSIAVH  106 (814)
T ss_dssp             EEEECCSSCEEEEEEC
T ss_pred             EEEecCCCCEEEEEEe
Confidence            7777799999988853

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=98.06  E-value=0.00024  Score=67.16  Aligned_cols=86  Identities=13%  Similarity=-0.015  Sum_probs=65.2

Q ss_pred             cccc-CCCceeeEEEECC-CCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcc
Q 015021          301 TCLK-DHPRKGERLTLSP-SGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDY  378 (414)
Q Consensus       301 ~~l~-D~~R~~~~i~~sP-~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~  378 (414)
                      ..+. .......+++.+| ++++++++...|+|.++|+.++..++.++++.+    ++....-.++         +  . 
T Consensus       255 ~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~----~v~~~~~s~~---------~--~-  318 (416)
T 2pm9_A          255 QTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGN----WCFKTKFAPE---------A--P-  318 (416)
T ss_dssp             BCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSS----CCCCEEECTT---------C--T-
T ss_pred             EEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCC----ceEEEEECCC---------C--C-
Confidence            3455 5667889999999 889999999999999999999999999998876    2221111110         0  0 


Q ss_pred             eEEEEEEcCCCCeEEEeeCCCCccee
Q 015021          379 CLCLAIHAPRKGIIEHLAGMADENWT  404 (414)
Q Consensus       379 ~l~LvIyaprRg~lEvW~~~~g~~v~  404 (414)
                        .+++.+..+|.|.||+++.++...
T Consensus       319 --~~l~s~~~d~~i~iw~~~~~~~~~  342 (416)
T 2pm9_A          319 --DLFACASFDNKIEVQTLQNLTNTL  342 (416)
T ss_dssp             --TEEEECCSSSEEEEEESCCCCCSS
T ss_pred             --CEEEEEecCCcEEEEEccCCCCCc
Confidence              156778889999999999987654

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=98.04  E-value=0.0029  Score=60.96  Aligned_cols=83  Identities=16%  Similarity=0.073  Sum_probs=60.0

Q ss_pred             cccCCCceeeEEEECCCC-CEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceE
Q 015021          302 CLKDHPRKGERLTLSPSG-SLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCL  380 (414)
Q Consensus       302 ~l~D~~R~~~~i~~sP~~-~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l  380 (414)
                      .|..+...+.+|+.+|+| +++|+...+|.|.|+|+.++.+++ .+||.+    +|....=.+.+           +   
T Consensus       252 ~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~~H~~----~V~~v~~sp~~-----------~---  312 (344)
T 4gqb_B          252 SSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQAHRD----FVRDATWSPLN-----------H---  312 (344)
T ss_dssp             EEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-ECCCSS----CEEEEEECSSS-----------T---
T ss_pred             EEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-EcCCCC----CEEEEEEeCCC-----------C---
Confidence            355556678899999998 688888889999999999999887 489988    45433211111           1   


Q ss_pred             EEEEEcCCCCeEEEeeCCCCcce
Q 015021          381 CLAIHAPRKGIIEHLAGMADENW  403 (414)
Q Consensus       381 ~LvIyaprRg~lEvW~~~~g~~v  403 (414)
                      .|+.-+..+|.|.+|++.+.+.-
T Consensus       313 ~llas~s~D~~v~~w~v~~~~~~  335 (344)
T 4gqb_B          313 SLLTTVGWDHQVVHHVVPTEPLP  335 (344)
T ss_dssp             TEEEEEETTSCEEEEECCC----
T ss_pred             eEEEEEcCCCeEEEEECCCCCCC
Confidence            25667788999999999886543

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=98.03  E-value=0.00074  Score=63.87  Aligned_cols=254  Identities=13%  Similarity=0.092  Sum_probs=138.6

Q ss_pred             eeeeccCc-ceeeeeecceEEEEeecCCCCCceeecccCCCCCCCeEEEEEeEEeCCcEEEEEeccccEEEEEecCCcEE
Q 015021           34 NLLCALDM-HTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLV  112 (414)
Q Consensus        34 ~~~~sp~~-~~la~A~~~~~v~~~w~~~~~~~v~~~g~l~~~~~e~ITs~~~lpl~dw~~I~VG~ssG~vrfyte~G~LL  112 (414)
                      .++.+|++ ++||.+.....|. -|+-........ -.+.. ....|+++.|-|. +-..++.|..+|.|++|+.++..+
T Consensus        78 ~~~~~~~~~~~l~s~~~dg~i~-iwd~~~~~~~~~-~~~~~-h~~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~  153 (383)
T 3ei3_B           78 SLEWHPTHPTTVAVGSKGGDII-LWDYDVQNKTSF-IQGMG-PGDAITGMKFNQF-NTNQLFVSSIRGATTLRDFSGSVI  153 (383)
T ss_dssp             EEEECSSCTTEEEEEEBTSCEE-EEETTSTTCEEE-ECCCS-TTCBEEEEEEETT-EEEEEEEEETTTEEEEEETTSCEE
T ss_pred             EEEECCCCCCEEEEEcCCCeEE-EEeCCCccccee-eecCC-cCCceeEEEeCCC-CCCEEEEEeCCCEEEEEECCCCce
Confidence            46778998 8888877654322 143332111111 11111 2467999988663 557899999999999999877766


Q ss_pred             eecccCc---cceeEEEEecccCCCCCCCCCCeEEEEeCCe-EEEEeChhHHHHHHHHHHhccccccCCCCccCCCcccc
Q 015021          113 HRQLIHP---GRILKLRVRGSRRDLTQDTAEEEVCVVMPGV-LARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDLE  188 (414)
Q Consensus       113 ~sQ~lh~---~pV~~ik~r~~~~~~~~~~~~eel~Ily~~~-iv~IdG~sL~~~Lr~c~~~~~~~~w~~~~~~~~~~~~~  188 (414)
                      ....-|.   .+|..+.+...         ...|.....+. |...|- +              +       +    .  
T Consensus       154 ~~~~~~~~~~~~v~~~~~~~~---------~~~l~~~~~d~~i~i~d~-~--------------~-------~----~--  196 (383)
T 3ei3_B          154 QVFAKTDSWDYWYCCVDVSVS---------RQMLATGDSTGRLLLLGL-D--------------G-------H----E--  196 (383)
T ss_dssp             EEEECCCCSSCCEEEEEEETT---------TTEEEEEETTSEEEEEET-T--------------S-------C----E--
T ss_pred             EEEeccCCCCCCeEEEEECCC---------CCEEEEECCCCCEEEEEC-C--------------C-------C----E--
Confidence            5554443   67777775321         22343333332 222221 0              0       0    0  


Q ss_pred             cccCCccceeccc-CCCCCceeeEEeCCCCCCchhhhccccceeEEEeCCCceeEEEEeccCCCcchhhhhhhhhhHHHH
Q 015021          189 NSYERLPHQLWNV-SKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVGAILSKVVPATF  267 (414)
Q Consensus       189 ~~~~~L~ykKW~l-~~~~~i~Daa~~G~~~p~~~d~~s~~~~~~~i~vG~~P~la~y~~~~~~~~s~~~al~S~va~av~  267 (414)
                               ...+ ...+.+.++++.-            .+.+.+++.+.+-.+-+|........               
T Consensus       197 ---------~~~~~~h~~~v~~~~~~~------------~~~~~l~s~~~d~~i~iwd~~~~~~~---------------  240 (383)
T 3ei3_B          197 ---------IFKEKLHKAKVTHAEFNP------------RCDWLMATSSVDATVKLWDLRNIKDK---------------  240 (383)
T ss_dssp             ---------EEEEECSSSCEEEEEECS------------SCTTEEEEEETTSEEEEEEGGGCCST---------------
T ss_pred             ---------EEEeccCCCcEEEEEECC------------CCCCEEEEEeCCCEEEEEeCCCCCcc---------------
Confidence                     0001 1122344444421            11111455555545544433221100               


Q ss_pred             HHhhhhhhhhhcCCCCCCCCCCCCcccccCCCCccccCCCceeeEEEECC-CCCEEEEEcCCCcEEEEEcCcceeEeeec
Q 015021          268 STISSLSKMIWRSEQSPKKSEPKPQSFARASPLTCLKDHPRKGERLTLSP-SGSLAAITDSLGRILLLDTQALVVVRLWK  346 (414)
Q Consensus       268 S~v~S~ak~~W~~~~~~~~~e~kp~~~~~a~pl~~l~D~~R~~~~i~~sP-~~~laa~tD~lGRV~L~D~~~~~vvrmwK  346 (414)
                                                   ..++..+ .......+++.+| ++++++++...|+|.++|+.++..++..+
T Consensus       241 -----------------------------~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  290 (383)
T 3ei3_B          241 -----------------------------NSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQII  290 (383)
T ss_dssp             -----------------------------TCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEE
T ss_pred             -----------------------------cceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccc
Confidence                                         0011112 3456788999999 99999999999999999999999988888


Q ss_pred             ccccceeeEEEEEecccccccccccCCCCCcceEEEEEEc-------CCCCeEEEeeCCCCcceee
Q 015021          347 GYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA-------PRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       347 GyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIya-------prRg~lEvW~~~~g~~v~~  405 (414)
                      |+......+.....        ..-.+   ...+..+-+.       ..+|.|.||++++|+++.+
T Consensus       291 ~~~~~~~~~~~~~~--------~~~~p---~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~~~~  345 (383)
T 3ei3_B          291 IHPHRQFQHLTPIK--------ATWHP---MYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQ  345 (383)
T ss_dssp             ECCBCCCTTSCCCC--------CEECS---SSSEEEEECBCCTTTCTTCCCCEEEEETTTCCEEEE
T ss_pred             cccccccccccceE--------EeccC---CCCceEEEecCCcccccCCCCeEEEEecCCCceeee
Confidence            77653221110000        00000   0111223333       3789999999999998754

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=98.03  E-value=0.00063  Score=62.41  Aligned_cols=43  Identities=16%  Similarity=0.151  Sum_probs=40.0

Q ss_pred             ceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeeccccc
Q 015021          308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRD  350 (414)
Q Consensus       308 R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRd  350 (414)
                      ....+++.+|+++++|+++..|.|.++|+.++..++.++++..
T Consensus       274 ~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  316 (368)
T 3mmy_A          274 YAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQ  316 (368)
T ss_dssp             CCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSS
T ss_pred             cceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCC
Confidence            4578899999999999999999999999999999999999876

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=98.01  E-value=0.0031  Score=60.47  Aligned_cols=78  Identities=15%  Similarity=0.069  Sum_probs=55.0

Q ss_pred             CCceeeEEEECCCC-CEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEE
Q 015021          306 HPRKGERLTLSPSG-SLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAI  384 (414)
Q Consensus       306 ~~R~~~~i~~sP~~-~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvI  384 (414)
                      ....+.+|+.+|++ +++|+....|.|.|+|+.++.+++.. |+++    +|....=.+          .. .   .+++
T Consensus       268 ~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~----~V~~vafsP----------~d-~---~~l~  328 (357)
T 4g56_B          268 HSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRD----FVTGVAWSP----------LD-H---SKFT  328 (357)
T ss_dssp             CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSS----CEEEEEECS----------SS-T---TEEE
T ss_pred             cceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCC----CEEEEEEeC----------CC-C---CEEE
Confidence            34557789999998 68888888999999999999999864 8887    454332111          00 0   1446


Q ss_pred             EcCCCCeEEEeeCCCCcc
Q 015021          385 HAPRKGIIEHLAGMADEN  402 (414)
Q Consensus       385 yaprRg~lEvW~~~~g~~  402 (414)
                      -+..+|.|.+|++....+
T Consensus       329 s~s~Dg~v~iW~~~~~~~  346 (357)
T 4g56_B          329 TVGWDHKVLHHHLPSEGR  346 (357)
T ss_dssp             EEETTSCEEEEECC----
T ss_pred             EEcCCCeEEEEECCCCCc
Confidence            778899999999976433

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.01  E-value=0.0038  Score=60.60  Aligned_cols=50  Identities=10%  Similarity=-0.015  Sum_probs=44.2

Q ss_pred             cccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccc
Q 015021          302 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA  351 (414)
Q Consensus       302 ~l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdA  351 (414)
                      .+......+.+++.+|++++++++...|.|.++|+.++..++.++|+.+.
T Consensus       305 ~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~  354 (464)
T 3v7d_B          305 ILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL  354 (464)
T ss_dssp             EECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred             EecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCc
Confidence            34555667889999999999999999999999999999999999998873

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=98.01  E-value=0.0067  Score=54.95  Aligned_cols=77  Identities=8%  Similarity=-0.039  Sum_probs=54.7

Q ss_pred             ceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEEEcC
Q 015021          308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP  387 (414)
Q Consensus       308 R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap  387 (414)
                      ....+++.+|++++++++...|.|.++|+.++...+ .+++.+    .+....-.++         +   .   +++.+-
T Consensus       225 ~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~~~~~~----~v~~~~~~~~---------~---~---~l~~~~  284 (337)
T 1gxr_A          225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHLHES----CVLSLKFAYC---------G---K---WFVSTG  284 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-ECCCSS----CEEEEEECTT---------S---S---EEEEEE
T ss_pred             CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-EcCCcc----ceeEEEECCC---------C---C---EEEEec
Confidence            346789999999999999999999999999988654 345444    2222211111         1   1   334566


Q ss_pred             CCCeEEEeeCCCCccee
Q 015021          388 RKGIIEHLAGMADENWT  404 (414)
Q Consensus       388 rRg~lEvW~~~~g~~v~  404 (414)
                      .+|.|.+|++++++.+.
T Consensus       285 ~dg~i~~~~~~~~~~~~  301 (337)
T 1gxr_A          285 KDNLLNAWRTPYGASIF  301 (337)
T ss_dssp             TTSEEEEEETTTCCEEE
T ss_pred             CCCcEEEEECCCCeEEE
Confidence            79999999999998873

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=98.00  E-value=0.0014  Score=61.30  Aligned_cols=79  Identities=8%  Similarity=-0.164  Sum_probs=58.9

Q ss_pred             ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEE
Q 015021          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL  382 (414)
Q Consensus       303 l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~L  382 (414)
                      +.........++.+|++ +++++...|+|.++|+.++..++..+++..    .+....-.+++            .   +
T Consensus       285 ~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~----~i~~~~~s~~~------------~---~  344 (425)
T 1r5m_A          285 FYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGV----PIFAGRISQDG------------Q---K  344 (425)
T ss_dssp             ECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTC----CEEEEEECTTS------------S---E
T ss_pred             ecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCc----cEEEEEEcCCC------------C---E
Confidence            44455667899999999 888888899999999999999999998765    23222111111            1   3


Q ss_pred             EEEcCCCCeEEEeeCCCCc
Q 015021          383 AIHAPRKGIIEHLAGMADE  401 (414)
Q Consensus       383 vIyaprRg~lEvW~~~~g~  401 (414)
                      ++.+-.+|.|.||++++++
T Consensus       345 l~~~~~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          345 YAVAFMDGQVNVYDLKKLN  363 (425)
T ss_dssp             EEEEETTSCEEEEECHHHH
T ss_pred             EEEEECCCeEEEEECCCCc
Confidence            4456679999999999987

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=97.98  E-value=0.0032  Score=59.48  Aligned_cols=69  Identities=12%  Similarity=-0.005  Sum_probs=55.0

Q ss_pred             eeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEEEcCC
Q 015021          309 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPR  388 (414)
Q Consensus       309 ~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyapr  388 (414)
                      ...+++.+|+|+++++....|.|.++|+.++..++.++|+.+    ++....-.+++               .+++-+..
T Consensus       272 ~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~----~v~~~~~s~dg---------------~~l~s~s~  332 (340)
T 1got_B          272 GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN----RVSCLGVTDDG---------------MAVATGSW  332 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSS----CEEEEEECTTS---------------SCEEEEET
T ss_pred             ceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCC----cEEEEEEcCCC---------------CEEEEEcC
Confidence            367899999999999999999999999999999999999987    44433322211               14466788


Q ss_pred             CCeEEEee
Q 015021          389 KGIIEHLA  396 (414)
Q Consensus       389 Rg~lEvW~  396 (414)
                      +|.|.||+
T Consensus       333 D~~i~iWd  340 (340)
T 1got_B          333 DSFLKIWN  340 (340)
T ss_dssp             TSCEEEEC
T ss_pred             CccEEecC
Confidence            99999996

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=97.96  E-value=0.0086  Score=55.81  Aligned_cols=226  Identities=9%  Similarity=0.035  Sum_probs=118.3

Q ss_pred             eeeecc-Ccceeeeeecce-EEEEeecCCCC-Cceeecc-------cCCCCCCCeEEEEEeEEeCCcEEEEEeccccEEE
Q 015021           34 NLLCAL-DMHTIALANRYQ-TVIINWADPEG-LVAKIRP-------ELSPIASEYITAIEWLVFEEMRALAVGTSRGYFL  103 (414)
Q Consensus        34 ~~~~sp-~~~~la~A~~~~-~v~~~w~~~~~-~~v~~~g-------~l~~~~~e~ITs~~~lpl~dw~~I~VG~ssG~vr  103 (414)
                      .++.+| ++++||.+.... +.+-....... .......       ... .....|+++.|.|- +-..++.|..+|.|+
T Consensus        48 ~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~-~~~~l~s~~~d~~i~  125 (408)
T 4a11_B           48 TLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPD-VHRYSVETVQWYPH-DTGMFTSSSFDKTLK  125 (408)
T ss_dssp             EEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTT-CCSSCEEEEEECTT-CTTCEEEEETTSEEE
T ss_pred             EEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccc-cCCCcEEEEEEccC-CCcEEEEEeCCCeEE
Confidence            467889 999988887654 33322222211 1111111       111 13577999988774 445788899999999


Q ss_pred             EEecCCcEEeecccCccceeEEEEecccCCCCCCCCCCeEEEEeCCe-EEEEeChhHHHHHHHHHHhccccccCCCCccC
Q 015021          104 VYDLKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGV-LARFDGSEIQKMLQRWFQDSNSNFWDQKPKQR  182 (414)
Q Consensus       104 fyte~G~LL~sQ~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ily~~~-iv~IdG~sL~~~Lr~c~~~~~~~~w~~~~~~~  182 (414)
                      +|+..........-|+.++..+.+-....      ...-+.+...+. |...|-.+              +       +.
T Consensus       126 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~v~~~d~~~--------------~-------~~  178 (408)
T 4a11_B          126 VWDTNTLQTADVFNFEETVYSHHMSPVST------KHCLVAVGTRGPKVQLCDLKS--------------G-------SC  178 (408)
T ss_dssp             EEETTTTEEEEEEECSSCEEEEEECSSCS------SCCEEEEEESSSSEEEEESSS--------------S-------CC
T ss_pred             EeeCCCCccceeccCCCceeeeEeecCCC------CCcEEEEEcCCCeEEEEeCCC--------------c-------ce
Confidence            99964444444444677887777544322      022233333332 32222100              0       00


Q ss_pred             CCcccccccCCccceecccC-CCCCceeeEEeCCCCCCchhhhccccceeEEEeCCCceeEEEEeccCCCcchhhhhhhh
Q 015021          183 DSEDLENSYERLPHQLWNVS-KYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVGAILSK  261 (414)
Q Consensus       183 ~~~~~~~~~~~L~ykKW~l~-~~~~i~Daa~~G~~~p~~~d~~s~~~~~~~i~vG~~P~la~y~~~~~~~~s~~~al~S~  261 (414)
                              .       ..+. ..+.+...++.-            .+.+.+++.+.+-.+-+|.........        
T Consensus       179 --------~-------~~~~~~~~~v~~~~~~~------------~~~~ll~~~~~dg~i~i~d~~~~~~~~--------  223 (408)
T 4a11_B          179 --------S-------HILQGHRQEILAVSWSP------------RYDYILATASADSRVKLWDVRRASGCL--------  223 (408)
T ss_dssp             --------C-------EEECCCCSCEEEEEECS------------SCTTEEEEEETTSCEEEEETTCSSCCS--------
T ss_pred             --------e-------eeecCCCCcEEEEEECC------------CCCcEEEEEcCCCcEEEEECCCCCccc--------
Confidence                    0       0011 122344444421            111224566667777677554433210        


Q ss_pred             hhHHHHHHhhhhhhhhhcCCCCCCCCCCCCcccccCCCCccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCccee
Q 015021          262 VVPATFSTISSLSKMIWRSEQSPKKSEPKPQSFARASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVV  341 (414)
Q Consensus       262 va~av~S~v~S~ak~~W~~~~~~~~~e~kp~~~~~a~pl~~l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~v  341 (414)
                               ..     +...    .. ...     ..+...+......+.+++.+|++++++++...|.|.++|+.++..
T Consensus       224 ---------~~-----~~~~----~~-~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~  279 (408)
T 4a11_B          224 ---------IT-----LDQH----NG-KKS-----QAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGEN  279 (408)
T ss_dssp             ---------EE-----CCTT----TT-CSC-----CCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCB
T ss_pred             ---------cc-----cccc----cc-ccc-----eeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCcc
Confidence                     00     0000    00 000     011122445566788999999999999999999999999998876


Q ss_pred             Eeeecc
Q 015021          342 VRLWKG  347 (414)
Q Consensus       342 vrmwKG  347 (414)
                      ++...+
T Consensus       280 ~~~~~~  285 (408)
T 4a11_B          280 TLVNYG  285 (408)
T ss_dssp             CCCCCC
T ss_pred             ceeccc
Confidence            655544

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=97.96  E-value=0.01  Score=54.06  Aligned_cols=80  Identities=20%  Similarity=0.107  Sum_probs=58.3

Q ss_pred             cCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEE
Q 015021          304 KDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLA  383 (414)
Q Consensus       304 ~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~Lv  383 (414)
                      ......+.+|+.+|+|++++++...|.|.++|+.++..++..++.....+...     .+          .  ..  ++ 
T Consensus       212 ~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~-----~~----------~--~~--~~-  271 (340)
T 4aow_A          212 IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCF-----SP----------N--RY--WL-  271 (340)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEE-----CS----------S--SS--EE-
T ss_pred             cCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeec-----CC----------C--Cc--ee-
Confidence            33445678899999999999999999999999999999999988654222111     11          1  11  22 


Q ss_pred             EEcCCCCeEEEeeCCCCccee
Q 015021          384 IHAPRKGIIEHLAGMADENWT  404 (414)
Q Consensus       384 IyaprRg~lEvW~~~~g~~v~  404 (414)
                       -+..+|.|.||+++.+..+.
T Consensus       272 -~~~~d~~i~iwd~~~~~~~~  291 (340)
T 4aow_A          272 -CAATGPSIKIWDLEGKIIVD  291 (340)
T ss_dssp             -EEEETTEEEEEETTTTEEEE
T ss_pred             -eccCCCEEEEEECCCCeEEE
Confidence             34468999999999877663

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=97.94  E-value=0.0015  Score=59.05  Aligned_cols=85  Identities=22%  Similarity=0.346  Sum_probs=57.9

Q ss_pred             eeeccCcceeeeeecceEEEEeecCCCCCceeecccCCCCCCCeEEEEEeEEeCCcEEEEEeccccEEEEEe-cCCcEEe
Q 015021           35 LLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYD-LKGDLVH  113 (414)
Q Consensus        35 ~~~sp~~~~la~A~~~~~v~~~w~~~~~~~v~~~g~l~~~~~e~ITs~~~lpl~dw~~I~VG~ssG~vrfyt-e~G~LL~  113 (414)
                      ++=|+++ +||+|....+-+  |+.... ++.-.-.+.. .++.|+++.+-|  +-..++.|..+|.|++|+ ++|.++.
T Consensus        31 l~WS~~~-~lAvg~D~tV~i--Wd~~tg-~~~~~~~~~~-~~~~V~~v~~~~--~~~~l~sgs~Dg~v~iw~~~~~~~~~  103 (318)
T 4ggc_A           31 VDWSSGN-VLAVALDNSVYL--WSASSG-DILQLLQMEQ-PGEYISSVAWIK--EGNYLAVGTSSAEVQLWDVQQQKRLR  103 (318)
T ss_dssp             EEECTTS-EEEEEETTEEEE--EETTTC-CEEEEEECCS-TTCCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             EEECCCC-EEEEEeCCEEEE--EECCCC-CEEEEEEecC-CCCeEEEEEECC--CCCEEEEEECCCcEEEeecCCceeEE
Confidence            5567776 889998776443  655432 2111111222 356788887765  556889999999999999 6888887


Q ss_pred             ecccCccceeEEE
Q 015021          114 RQLIHPGRILKLR  126 (414)
Q Consensus       114 sQ~lh~~pV~~ik  126 (414)
                      ...-|..++..+.
T Consensus       104 ~~~~h~~~~~~~~  116 (318)
T 4ggc_A          104 NMTSHSARVGSLS  116 (318)
T ss_dssp             EEECCSSCEEEEE
T ss_pred             EecCccceEEEee
Confidence            7777777777655

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=97.93  E-value=0.018  Score=55.78  Aligned_cols=85  Identities=21%  Similarity=0.316  Sum_probs=59.1

Q ss_pred             eeeccCcceeeeeecceEEEEeecCCCCCceeecccCCCCCCCeEEEEEeEEeCCcEEEEEeccccEEEEEe-cCCcEEe
Q 015021           35 LLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYD-LKGDLVH  113 (414)
Q Consensus        35 ~~~sp~~~~la~A~~~~~v~~~w~~~~~~~v~~~g~l~~~~~e~ITs~~~lpl~dw~~I~VG~ssG~vrfyt-e~G~LL~  113 (414)
                      ++=|++ ++||+|.+..+-+  |+... +++.-.-.+.. .++.||++.|-|  |-..+++|..+|.|++|+ ++|.++.
T Consensus       111 l~wS~~-n~lAvgld~tV~l--Wd~~t-g~~~~~~~~~~-~~~~V~sv~fsp--dg~~lasgs~Dg~v~iWd~~~~~~~~  183 (420)
T 4gga_A          111 VDWSSG-NVLAVALDNSVYL--WSASS-GDILQLLQMEQ-PGEYISSVAWIK--EGNYLAVGTSSAEVQLWDVQQQKRLR  183 (420)
T ss_dssp             EEECTT-SEEEEEETTEEEE--EETTT-CCEEEEEECCS-TTCCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             EEECCC-CEEEEEeCCEEEE--EECCC-CCEEEEEEecC-CCCcEEEEEECC--CCCEEEEEECCCeEEEEEcCCCcEEE
Confidence            444554 5889998876444  65443 22221112222 357799999865  677899999999999999 6888888


Q ss_pred             ecccCccceeEEE
Q 015021          114 RQLIHPGRILKLR  126 (414)
Q Consensus       114 sQ~lh~~pV~~ik  126 (414)
                      .-.-|..+|..+.
T Consensus       184 ~~~~h~~~v~~~s  196 (420)
T 4gga_A          184 NMTSHSARVGSLS  196 (420)
T ss_dssp             EECCCSSCEEEEE
T ss_pred             EEeCCCCceEEEe
Confidence            7777888877765

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=97.91  E-value=0.0062  Score=57.78  Aligned_cols=89  Identities=11%  Similarity=0.082  Sum_probs=60.4

Q ss_pred             CeeeeccCcceeeeeecceEEEEeecCCCCCceeecccCCCCCCCeEEEEEeEEeCCcEEEEEeccccEEEEEe-cCCcE
Q 015021           33 PNLLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYD-LKGDL  111 (414)
Q Consensus        33 ~~~~~sp~~~~la~A~~~~~v~~~w~~~~~~~v~~~g~l~~~~~e~ITs~~~lpl~dw~~I~VG~ssG~vrfyt-e~G~L  111 (414)
                      +....+|+++.||.+.....|. -|+-... ..  ...+.. ....|+++.|-|  +-..++.|..+|.|++|+ ++|..
T Consensus       101 ~~~~~~~~~~~l~~~~~dg~i~-iwd~~~~-~~--~~~~~~-h~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~  173 (420)
T 3vl1_A          101 AVDTAKLQMRRFILGTTEGDIK-VLDSNFN-LQ--REIDQA-HVSEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSN  173 (420)
T ss_dssp             EEEEECSSSCEEEEEETTSCEE-EECTTSC-EE--EEETTS-SSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCC
T ss_pred             EEEEEecCCCEEEEEECCCCEE-EEeCCCc-ce--eeeccc-ccCccEEEEECC--CCCEEEEEeCCCeEEEEeCCCCcC
Confidence            3445788999988886654332 2443321 11  112222 346799888865  566889999999999999 57777


Q ss_pred             EeecccCccceeEEEEe
Q 015021          112 VHRQLIHPGRILKLRVR  128 (414)
Q Consensus       112 L~sQ~lh~~pV~~ik~r  128 (414)
                      +..-.-|..+|..+.+.
T Consensus       174 ~~~~~~h~~~v~~~~~~  190 (420)
T 3vl1_A          174 PRTLIGHRATVTDIAII  190 (420)
T ss_dssp             CEEEECCSSCEEEEEEE
T ss_pred             ceEEcCCCCcEEEEEEc
Confidence            76666788999998864

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=97.91  E-value=0.0045  Score=59.16  Aligned_cols=78  Identities=10%  Similarity=0.072  Sum_probs=59.9

Q ss_pred             CCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCc-ceeEeeecccccce-----------------eeEEEEEecccccc
Q 015021          305 DHPRKGERLTLSPSGSLAAITDSLGRILLLDTQA-LVVVRLWKGYRDAS-----------------CVFMEMLVNKDAAT  366 (414)
Q Consensus       305 D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~-~~vvrmwKGyRdAq-----------------~~wi~~~~~~~~~~  366 (414)
                      .....+.+++.+|+|+++++++. |.|.++|+.+ +..++.++|+....                 +.|-.     +   
T Consensus       283 ~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~-----~---  353 (447)
T 3dw8_B          283 EIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNG-----S---  353 (447)
T ss_dssp             HHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECT-----T---
T ss_pred             ccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECC-----C---
Confidence            33447889999999999888877 9999999998 99999999886311                 23320     0   


Q ss_pred             cccccCCCCCcceEEEEEEcCCCCeEEEeeCCCCccee
Q 015021          367 SSAYYAPVKSDYCLCLAIHAPRKGIIEHLAGMADENWT  404 (414)
Q Consensus       367 ~~~~~~~~k~~~~l~LvIyaprRg~lEvW~~~~g~~v~  404 (414)
                             +   .  +| +-+-.+|.|.||++++|+.+.
T Consensus       354 -------~---~--~l-~s~s~dg~v~iwd~~~~~~~~  378 (447)
T 3dw8_B          354 -------D---S--VV-MTGSYNNFFRMFDRNTKRDIT  378 (447)
T ss_dssp             -------S---S--EE-EEECSTTEEEEEETTTCCEEE
T ss_pred             -------C---C--EE-EEeccCCEEEEEEcCCCccee
Confidence                   1   1  33 677889999999999998874

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=97.88  E-value=0.0067  Score=57.25  Aligned_cols=89  Identities=11%  Similarity=0.175  Sum_probs=57.2

Q ss_pred             eeecc-CcceeeeeecceEEEEeecCCCCCceeecccCCCCCCCeEEEEEeEEeCCcEEEEEeccccEEEEEecCCcEEe
Q 015021           35 LLCAL-DMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVH  113 (414)
Q Consensus        35 ~~~sp-~~~~la~A~~~~~v~~~w~~~~~~~v~~~g~l~~~~~e~ITs~~~lpl~dw~~I~VG~ssG~vrfyte~G~LL~  113 (414)
                      ++.+| +++.|+.+.....|. -|+-.......+.+.- . ....|+++.|-|  +-..+++|..+|.|++|+.+|..+.
T Consensus       124 ~~~~~~~~~~l~s~~~d~~i~-iwd~~~~~~~~~~~~~-~-~~~~v~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~  198 (383)
T 3ei3_B          124 MKFNQFNTNQLFVSSIRGATT-LRDFSGSVIQVFAKTD-S-WDYWYCCVDVSV--SRQMLATGDSTGRLLLLGLDGHEIF  198 (383)
T ss_dssp             EEEETTEEEEEEEEETTTEEE-EEETTSCEEEEEECCC-C-SSCCEEEEEEET--TTTEEEEEETTSEEEEEETTSCEEE
T ss_pred             EEeCCCCCCEEEEEeCCCEEE-EEECCCCceEEEeccC-C-CCCCeEEEEECC--CCCEEEEECCCCCEEEEECCCCEEE
Confidence            44556 556666555443322 2433321111222211 1 236688887764  6668999999999999999999988


Q ss_pred             ecccCccceeEEEEe
Q 015021          114 RQLIHPGRILKLRVR  128 (414)
Q Consensus       114 sQ~lh~~pV~~ik~r  128 (414)
                      .-.-|..+|..+.+-
T Consensus       199 ~~~~h~~~v~~~~~~  213 (383)
T 3ei3_B          199 KEKLHKAKVTHAEFN  213 (383)
T ss_dssp             EEECSSSCEEEEEEC
T ss_pred             EeccCCCcEEEEEEC
Confidence            888899999998863

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.84  E-value=0.0084  Score=58.30  Aligned_cols=86  Identities=19%  Similarity=0.286  Sum_probs=58.8

Q ss_pred             CeeeeccCcceeeeeecceEEEEeecCCCCCceeecccCCCCCCCeEEEEEeEEeCCcEEEEEeccccEEEEEe-cCCcE
Q 015021           33 PNLLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYD-LKGDL  111 (414)
Q Consensus        33 ~~~~~sp~~~~la~A~~~~~v~~~w~~~~~~~v~~~g~l~~~~~e~ITs~~~lpl~dw~~I~VG~ssG~vrfyt-e~G~L  111 (414)
                      .+.+++++++.|+.+.....|. -|+.... ..  ...+.. ....|+++.+    |-..+++|..+|.|++|+ ++|.+
T Consensus       135 ~v~~~~~d~~~l~~g~~dg~i~-iwd~~~~-~~--~~~~~~-h~~~v~~l~~----~~~~l~sg~~dg~i~vwd~~~~~~  205 (435)
T 1p22_A          135 GVYCLQYDDQKIVSGLRDNTIK-IWDKNTL-EC--KRILTG-HTGSVLCLQY----DERVIITGSSDSTVRVWDVNTGEM  205 (435)
T ss_dssp             CEEEEECCSSEEEEEESSSCEE-EEESSSC-CE--EEEECC-CSSCEEEEEC----CSSEEEEEETTSCEEEEESSSCCE
T ss_pred             cEEEEEECCCEEEEEeCCCeEE-EEeCCCC-eE--EEEEcC-CCCcEEEEEE----CCCEEEEEcCCCeEEEEECCCCcE
Confidence            5778888888888776654332 2433221 11  111222 2456887766    667999999999999999 68888


Q ss_pred             EeecccCccceeEEEE
Q 015021          112 VHRQLIHPGRILKLRV  127 (414)
Q Consensus       112 L~sQ~lh~~pV~~ik~  127 (414)
                      +..-.-|.++|..+.+
T Consensus       206 ~~~~~~h~~~v~~l~~  221 (435)
T 1p22_A          206 LNTLIHHCEAVLHLRF  221 (435)
T ss_dssp             EEEECCCCSCEEEEEC
T ss_pred             EEEEcCCCCcEEEEEE
Confidence            8777778889988885

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=97.82  E-value=0.0056  Score=58.47  Aligned_cols=69  Identities=14%  Similarity=0.003  Sum_probs=54.5

Q ss_pred             eeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEEEcCC
Q 015021          309 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPR  388 (414)
Q Consensus       309 ~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyapr  388 (414)
                      ...+++.+|+|+++++....|.|.++|+.++..+..++|+.+    ++....-.+++         +      +++-+..
T Consensus       286 ~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~----~v~~l~~spdg---------~------~l~sgs~  346 (354)
T 2pbi_B          286 GASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHEN----RVSTLRVSPDG---------T------AFCSGSW  346 (354)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSS----CEEEEEECTTS---------S------CEEEEET
T ss_pred             ceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCC----cEEEEEECCCC---------C------EEEEEcC
Confidence            356789999999999999999999999999999999999987    55443322211         1      3456778


Q ss_pred             CCeEEEee
Q 015021          389 KGIIEHLA  396 (414)
Q Consensus       389 Rg~lEvW~  396 (414)
                      +|.|.||+
T Consensus       347 D~~v~vW~  354 (354)
T 2pbi_B          347 DHTLRVWA  354 (354)
T ss_dssp             TSEEEEEC
T ss_pred             CCCEEecC
Confidence            99999995

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=97.82  E-value=0.0019  Score=59.84  Aligned_cols=80  Identities=6%  Similarity=-0.093  Sum_probs=60.0

Q ss_pred             CceeeEEEECCCCCEEEEEcCCCcEEEEEc------------------CcceeEeeecccccceeeEEEEEecccccccc
Q 015021          307 PRKGERLTLSPSGSLAAITDSLGRILLLDT------------------QALVVVRLWKGYRDASCVFMEMLVNKDAATSS  368 (414)
Q Consensus       307 ~R~~~~i~~sP~~~laa~tD~lGRV~L~D~------------------~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~  368 (414)
                      ...+.+++.+|++++++++...|.|.++|+                  ..+..++.++++.+    .+....-.+++   
T Consensus       142 ~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~---  214 (372)
T 1k8k_C          142 RSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG----WVHGVCFSANG---  214 (372)
T ss_dssp             CSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS----CEEEEEECSSS---
T ss_pred             CCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCC----eEEEEEECCCC---
Confidence            456789999999999999999999999995                  47889999987766    33322211111   


Q ss_pred             cccCCCCCcceEEEEEEcCCCCeEEEeeCCCCcceee
Q 015021          369 AYYAPVKSDYCLCLAIHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       369 ~~~~~~k~~~~l~LvIyaprRg~lEvW~~~~g~~v~~  405 (414)
                              .    +++.+-.+|.|.+|++++++.+.+
T Consensus       215 --------~----~l~~~~~d~~i~i~d~~~~~~~~~  239 (372)
T 1k8k_C          215 --------S----RVAWVSHDSTVCLADADKKMAVAT  239 (372)
T ss_dssp             --------S----EEEEEETTTEEEEEEGGGTTEEEE
T ss_pred             --------C----EEEEEeCCCEEEEEECCCCceeEE
Confidence                    1    445667899999999999987743

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=97.77  E-value=0.0035  Score=58.76  Aligned_cols=228  Identities=10%  Similarity=-0.002  Sum_probs=118.7

Q ss_pred             eeeeccCcceeeeeecc-eEEEEeecCCCCCceeecccCCCCCCCeEEEEEeEEeCCcEEEEEeccccEEEEEec-CCc-
Q 015021           34 NLLCALDMHTIALANRY-QTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDL-KGD-  110 (414)
Q Consensus        34 ~~~~sp~~~~la~A~~~-~~v~~~w~~~~~~~v~~~g~l~~~~~e~ITs~~~lpl~dw~~I~VG~ssG~vrfyte-~G~-  110 (414)
                      .++.+|++++||.+... .+.+-.....   .......+.. ....|+++.|-|  |-..++.|..+|.|++|+. +|. 
T Consensus        16 ~~~~s~~g~~l~~~~~d~~i~iw~~~~~---~~~~~~~~~~-h~~~v~~~~~s~--~~~~l~s~s~d~~v~vwd~~~~~~   89 (377)
T 3dwl_C           16 EHAFNSQRTEFVTTTATNQVELYEQDGN---GWKHARTFSD-HDKIVTCVDWAP--KSNRIVTCSQDRNAYVYEKRPDGT   89 (377)
T ss_dssp             CCEECSSSSEEECCCSSSCBCEEEEETT---EEEECCCBCC-CSSCEEEEEECT--TTCCEEEEETTSSEEEC------C
T ss_pred             EEEECCCCCEEEEecCCCEEEEEEccCC---ceEEEEEEec-CCceEEEEEEeC--CCCEEEEEeCCCeEEEEEcCCCCc
Confidence            46788999999988444 3333222211   1112223322 246788887764  5567899999999999994 554 


Q ss_pred             --EEeecccCccceeEEEEecccCCCCCCCCCCeEEEEeCCeEEEEeChhHHHHHHHHHHhccccccCCCCccCCCcccc
Q 015021          111 --LVHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGVLARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDLE  188 (414)
Q Consensus       111 --LL~sQ~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ily~~~iv~IdG~sL~~~Lr~c~~~~~~~~w~~~~~~~~~~~~~  188 (414)
                        .+..-.-|..+|..+.+...         .+.|.....+..+++                    |+-...+    .  
T Consensus        90 ~~~~~~~~~~~~~v~~~~~~~~---------~~~l~~~~~d~~i~i--------------------wd~~~~~----~--  134 (377)
T 3dwl_C           90 WKQTLVLLRLNRAATFVRWSPN---------EDKFAVGSGARVISV--------------------CYFEQEN----D--  134 (377)
T ss_dssp             CCCEEECCCCSSCEEEEECCTT---------SSCCEEEESSSCEEE--------------------CCC-----------
T ss_pred             eeeeeEecccCCceEEEEECCC---------CCEEEEEecCCeEEE--------------------EEECCcc----c--
Confidence              34444457888888875331         222333333332211                    2100000    0  


Q ss_pred             cccCCccceecccCCCCCceeeEEeCCCCCCchhhhccccceeEEEeCCCceeEEEEeccCCCcchhhhhhhhhhHHHHH
Q 015021          189 NSYERLPHQLWNVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVGAILSKVVPATFS  268 (414)
Q Consensus       189 ~~~~~L~ykKW~l~~~~~i~Daa~~G~~~p~~~d~~s~~~~~~~i~vG~~P~la~y~~~~~~~~s~~~al~S~va~av~S  268 (414)
                        .  -..+...-...+.+.+.++.-            ++. .+++.+.+-.+-+|......-..           .   
T Consensus       135 --~--~~~~~~~~~h~~~v~~~~~~~------------~~~-~l~~~~~d~~i~iwd~~~~~~~~-----------~---  183 (377)
T 3dwl_C          135 --W--WVSKHLKRPLRSTILSLDWHP------------NNV-LLAAGCADRKAYVLSAYVRDVDA-----------K---  183 (377)
T ss_dssp             --C--CCCEEECSSCCSCEEEEEECT------------TSS-EEEEEESSSCEEEEEECCSSCC------------C---
T ss_pred             --c--eeeeEeecccCCCeEEEEEcC------------CCC-EEEEEeCCCEEEEEEEEecccCC-----------C---
Confidence              0  000001101233455554421            111 14555666666666443211000           0   


Q ss_pred             HhhhhhhhhhcCCCCCCCCCCCCcccccCCCCccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCccee----Eee
Q 015021          269 TISSLSKMIWRSEQSPKKSEPKPQSFARASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVV----VRL  344 (414)
Q Consensus       269 ~v~S~ak~~W~~~~~~~~~e~kp~~~~~a~pl~~l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~v----vrm  344 (414)
                          .....|+.        ..+.    ..++..+ .....+.+++.+|+|+++|++...|.|.++|+.++..    ++.
T Consensus       184 ----~~~~~~~~--------~~~~----~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  246 (377)
T 3dwl_C          184 ----PEASVWGS--------RLPF----NTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALIT  246 (377)
T ss_dssp             ----CCSCSSCS--------CCCE----EEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCC
T ss_pred             ----cccccccc--------ccch----hhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEe
Confidence                00001100        0010    1122334 6667789999999999999999999999999999988    888


Q ss_pred             eccccc
Q 015021          345 WKGYRD  350 (414)
Q Consensus       345 wKGyRd  350 (414)
                      ++|+.+
T Consensus       247 ~~~~~~  252 (377)
T 3dwl_C          247 VKLSQL  252 (377)
T ss_dssp             EECSSS
T ss_pred             ecCCCC
Confidence            999877

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=97.73  E-value=0.023  Score=51.93  Aligned_cols=81  Identities=10%  Similarity=-0.027  Sum_probs=55.6

Q ss_pred             CCCceeeEEEECCCCC-EEEEEcCCCcEEEEEcCcc-------------------eeEeeecccccceeeEEEEEecccc
Q 015021          305 DHPRKGERLTLSPSGS-LAAITDSLGRILLLDTQAL-------------------VVVRLWKGYRDASCVFMEMLVNKDA  364 (414)
Q Consensus       305 D~~R~~~~i~~sP~~~-laa~tD~lGRV~L~D~~~~-------------------~vvrmwKGyRdAq~~wi~~~~~~~~  364 (414)
                      .....+.+++.+|+++ +++++...|.|.++|+.++                   ..++.++++.+    .+....-.++
T Consensus       257 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~v~~~~~s~~  332 (357)
T 3i2n_A          257 AHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQ----PISSLDWSPD  332 (357)
T ss_dssp             CCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSS----CEEEEEECSS
T ss_pred             CCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCC----CeeEEEEcCC
Confidence            4456678899999998 8999999999999999864                   45666777765    2222211111


Q ss_pred             cccccccCCCCCcceEEEEEEcCCCCeEEEeeCCCCcce
Q 015021          365 ATSSAYYAPVKSDYCLCLAIHAPRKGIIEHLAGMADENW  403 (414)
Q Consensus       365 ~~~~~~~~~~k~~~~l~LvIyaprRg~lEvW~~~~g~~v  403 (414)
                               +  .   +|++-+..+|.|.||++.++++|
T Consensus       333 ---------~--~---~l~~s~~~d~~i~iw~~~~~~~i  357 (357)
T 3i2n_A          333 ---------K--R---GLCVCSSFDQTVRVLIVTKLNKI  357 (357)
T ss_dssp             ---------S--T---TEEEEEETTSEEEEEEECC----
T ss_pred             ---------C--C---eEEEEecCCCcEEEEECCCcccC
Confidence                     1  1   35556888999999999998875

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=97.67  E-value=0.0003  Score=64.66  Aligned_cols=85  Identities=11%  Similarity=-0.028  Sum_probs=68.4

Q ss_pred             cccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEE
Q 015021          302 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLC  381 (414)
Q Consensus       302 ~l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~  381 (414)
                      .|..+...+.+++.+|+|+++|+++..|.|.++|+.++..++.++|+.+.    +....-.++         ++      
T Consensus        27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~----v~~~~~~~~---------~~------   87 (369)
T 3zwl_B           27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGT----IWSIDVDCF---------TK------   87 (369)
T ss_dssp             EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSC----EEEEEECTT---------SS------
T ss_pred             EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCc----EEEEEEcCC---------CC------
Confidence            48889999999999999999999999999999999999999999998873    332221111         11      


Q ss_pred             EEEEcCCCCeEEEeeCCCCcceee
Q 015021          382 LAIHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       382 LvIyaprRg~lEvW~~~~g~~v~~  405 (414)
                      +++.+-.+|.|.||++++++.+.+
T Consensus        88 ~l~s~~~dg~i~iwd~~~~~~~~~  111 (369)
T 3zwl_B           88 YCVTGSADYSIKLWDVSNGQCVAT  111 (369)
T ss_dssp             EEEEEETTTEEEEEETTTCCEEEE
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEE
Confidence            345667899999999999988744

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=97.66  E-value=0.0059  Score=64.99  Aligned_cols=93  Identities=13%  Similarity=0.144  Sum_probs=60.2

Q ss_pred             eeeeccCcceeeeeecceEEEEeecCCCCCceeecccCCCCCCCeEEEEEeEEeCCcEEEEEeccccEEEEEec-CCc--
Q 015021           34 NLLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDL-KGD--  110 (414)
Q Consensus        34 ~~~~sp~~~~la~A~~~~~v~~~w~~~~~~~v~~~g~l~~~~~e~ITs~~~lpl~dw~~I~VG~ssG~vrfyte-~G~--  110 (414)
                      .++.+|+++.||.+.....|.+ |+-.. ........+.. ....|+++.|.|-.+-..++.|..+|.|++|+. +|.  
T Consensus        14 ~l~~s~dg~~latg~~dg~I~v-wd~~~-~~~~~~~~l~~-h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~   90 (753)
T 3jro_A           14 DAVLDYYGKRLATCSSDKTIKI-FEVEG-ETHKLIDTLTG-HEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWS   90 (753)
T ss_dssp             EECCCSSSCCEEEEETTTEEEE-EEEET-TEEEEEEEECC-CSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEE
T ss_pred             EEEECCCCCeEEEEECCCcEEE-EecCC-CCCccceeccC-CcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCccc
Confidence            3567789999888866543321 22111 11112222322 246699998877655778999999999999995 554  


Q ss_pred             EEeecccCccceeEEEEec
Q 015021          111 LVHRQLIHPGRILKLRVRG  129 (414)
Q Consensus       111 LL~sQ~lh~~pV~~ik~r~  129 (414)
                      .+..-.-|..+|..+.+..
T Consensus        91 ~~~~~~~h~~~V~~v~~sp  109 (753)
T 3jro_A           91 QIAVHAVHSASVNSVQWAP  109 (753)
T ss_dssp             EEEEECCCSSCEEEEEECC
T ss_pred             ccccccCCCCCeEEEEECC
Confidence            5555566889999998643

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=97.62  E-value=0.026  Score=53.36  Aligned_cols=91  Identities=13%  Similarity=0.073  Sum_probs=57.0

Q ss_pred             eeeeccCcceeeeeecceEEEEeecCCCCCceeecccCCCCCCCeEEEEEeEEeCCcEEEEEeccccEEEEEec-CCc--
Q 015021           34 NLLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDL-KGD--  110 (414)
Q Consensus        34 ~~~~sp~~~~la~A~~~~~v~~~w~~~~~~~v~~~g~l~~~~~e~ITs~~~lpl~dw~~I~VG~ssG~vrfyte-~G~--  110 (414)
                      .++.||+|.+||.+-....|-+ |+.... .......+...-...|+++.|-|  |-..++.|-.+|.+++|+. .+.  
T Consensus        21 ~l~~sp~g~~las~~~D~~i~i-w~~~~~-~~~~~~~~~~~h~~~v~~~~~sp--~g~~l~s~s~D~~v~iw~~~~~~~~   96 (345)
T 3fm0_A           21 FLAWNPAGTLLASCGGDRRIRI-WGTEGD-SWICKSVLSEGHQRTVRKVAWSP--CGNYLASASFDATTCIWKKNQDDFE   96 (345)
T ss_dssp             EEEECTTSSCEEEEETTSCEEE-EEEETT-EEEEEEEECSSCSSCEEEEEECT--TSSEEEEEETTSCEEEEEECCC-EE
T ss_pred             EEEECCCCCEEEEEcCCCeEEE-EEcCCC-cceeeeeeccccCCcEEEEEECC--CCCEEEEEECCCcEEEEEccCCCeE
Confidence            4788999999998876644331 332211 11111222222246688887764  6678999999999999985 343  


Q ss_pred             EEeecccCccceeEEEEe
Q 015021          111 LVHRQLIHPGRILKLRVR  128 (414)
Q Consensus       111 LL~sQ~lh~~pV~~ik~r  128 (414)
                      .+..-.-|..+|..+.+.
T Consensus        97 ~~~~~~~h~~~v~~v~~s  114 (345)
T 3fm0_A           97 CVTTLEGHENEVKSVAWA  114 (345)
T ss_dssp             EEEEECCCSSCEEEEEEC
T ss_pred             EEEEccCCCCCceEEEEe
Confidence            334434578888888753

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=97.61  E-value=0.016  Score=55.38  Aligned_cols=83  Identities=12%  Similarity=0.075  Sum_probs=61.5

Q ss_pred             ccCCCceeeEEEECC--CCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceE
Q 015021          303 LKDHPRKGERLTLSP--SGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCL  380 (414)
Q Consensus       303 l~D~~R~~~~i~~sP--~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l  380 (414)
                      +..+......+.++|  +|++++++...|.|.++|+.++..++.++|+.+    .+....-.+++           .   
T Consensus       192 ~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~----~v~~v~~~p~~-----------~---  253 (354)
T 2pbi_B          192 FHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHES----DVNSVRYYPSG-----------D---  253 (354)
T ss_dssp             EECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSS----CEEEEEECTTS-----------S---
T ss_pred             EcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC----CeEEEEEeCCC-----------C---
Confidence            334444566777777  578999999999999999999999999999887    44433221111           1   


Q ss_pred             EEEEEcCCCCeEEEeeCCCCccee
Q 015021          381 CLAIHAPRKGIIEHLAGMADENWT  404 (414)
Q Consensus       381 ~LvIyaprRg~lEvW~~~~g~~v~  404 (414)
                       +++-+..+|.|.+|+++.++.+.
T Consensus       254 -~l~s~s~D~~v~lwd~~~~~~~~  276 (354)
T 2pbi_B          254 -AFASGSDDATCRLYDLRADREVA  276 (354)
T ss_dssp             -EEEEEETTSCEEEEETTTTEEEE
T ss_pred             -EEEEEeCCCeEEEEECCCCcEEE
Confidence             44667789999999999887654

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=97.60  E-value=0.013  Score=56.22  Aligned_cols=80  Identities=6%  Similarity=-0.003  Sum_probs=52.0

Q ss_pred             ceeeEEEECCCCCEEEEE--cCCCcEEEEEcCcceeEee--ecccccceeeEEEEEecccccccccccCCCCCcceEEEE
Q 015021          308 RKGERLTLSPSGSLAAIT--DSLGRILLLDTQALVVVRL--WKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLA  383 (414)
Q Consensus       308 R~~~~i~~sP~~~laa~t--D~lGRV~L~D~~~~~vvrm--wKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~Lv  383 (414)
                      ....+++.+|++++++++  ...|.|.++|+.++...++  .+|+... +.-+...   ++         ++      ++
T Consensus       304 ~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~-v~~~~~s---~d---------g~------~l  364 (401)
T 4aez_A          304 SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTR-VLYSALS---PD---------GR------IL  364 (401)
T ss_dssp             SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSC-CCEEEEC---TT---------SS------EE
T ss_pred             CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCC-EEEEEEC---CC---------CC------EE
Confidence            457889999999988885  4899999999999877776  4466542 1111111   10         11      45


Q ss_pred             EEcCCCCeEEEeeCCCCcceeec
Q 015021          384 IHAPRKGIIEHLAGMADENWTTS  406 (414)
Q Consensus       384 IyaprRg~lEvW~~~~g~~v~~~  406 (414)
                      +.+-.+|.|.+|++.+|+++...
T Consensus       365 ~s~~~dg~i~iw~~~~~~~~~~~  387 (401)
T 4aez_A          365 STAASDENLKFWRVYDGDHVKRP  387 (401)
T ss_dssp             EEECTTSEEEEEECCC-------
T ss_pred             EEEeCCCcEEEEECCCCcccccc
Confidence            66788999999999999988554

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=97.59  E-value=0.00042  Score=66.92  Aligned_cols=85  Identities=12%  Similarity=0.052  Sum_probs=67.3

Q ss_pred             ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEE
Q 015021          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL  382 (414)
Q Consensus       303 l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~L  382 (414)
                      +..+...+.+|+.+|+|+++|+....|.|.++|+.++..++.++|+.+    .|....-...+           .   .+
T Consensus       123 ~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~----~V~~~~~~~~~-----------~---~~  184 (344)
T 4gqb_B          123 KYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA----QVTCVAASPHK-----------D---SV  184 (344)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS----CEEEEEECSSC-----------T---TE
T ss_pred             ccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCC----ceEEEEecCCC-----------C---Cc
Confidence            455677789999999999999999999999999999999999999987    44333221111           1   14


Q ss_pred             EEEcCCCCeEEEeeCCCCcceee
Q 015021          383 AIHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       383 vIyaprRg~lEvW~~~~g~~v~~  405 (414)
                      ++-+..+|.|.||++++++.+.+
T Consensus       185 l~s~s~D~~v~iwd~~~~~~~~~  207 (344)
T 4gqb_B          185 FLSCSEDNRILLWDTRCPKPASQ  207 (344)
T ss_dssp             EEEEETTSCEEEEETTSSSCEEE
T ss_pred             eeeeccccccccccccccceeee
Confidence            45678899999999999987754

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=97.58  E-value=0.03  Score=58.19  Aligned_cols=81  Identities=20%  Similarity=0.124  Sum_probs=57.5

Q ss_pred             ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEE
Q 015021          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL  382 (414)
Q Consensus       303 l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~L  382 (414)
                      +..+...+.+|+.+|+|++++++...|.|.|+|+.++..++..++...     +....-.+          .  ..  +|
T Consensus       557 ~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~-----v~~~~~sp----------~--~~--~l  617 (694)
T 3dm0_A          557 LAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSV-----IHALCFSP----------N--RY--WL  617 (694)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSC-----EEEEEECS----------S--SS--EE
T ss_pred             EcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCc-----EEEEEEcC----------C--Cc--EE
Confidence            455566788999999999999999999999999999998887765322     22211111          1  11  33


Q ss_pred             EEEcCCCCeEEEeeCCCCccee
Q 015021          383 AIHAPRKGIIEHLAGMADENWT  404 (414)
Q Consensus       383 vIyaprRg~lEvW~~~~g~~v~  404 (414)
                      +.  ..++.|.||++++++.+.
T Consensus       618 ~~--~~~~~i~iwd~~~~~~~~  637 (694)
T 3dm0_A          618 CA--ATEHGIKIWDLESKSIVE  637 (694)
T ss_dssp             EE--EETTEEEEEETTTTEEEE
T ss_pred             EE--EcCCCEEEEECCCCCChh
Confidence            32  346679999999988763

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=97.56  E-value=0.025  Score=51.76  Aligned_cols=79  Identities=10%  Similarity=-0.057  Sum_probs=57.1

Q ss_pred             CceeeEEEECC---CCCEEEEEcCCCcEEEEEcCcceeEeeec-----ccccceeeEEEEEecccccccccccCCCCCcc
Q 015021          307 PRKGERLTLSP---SGSLAAITDSLGRILLLDTQALVVVRLWK-----GYRDASCVFMEMLVNKDAATSSAYYAPVKSDY  378 (414)
Q Consensus       307 ~R~~~~i~~sP---~~~laa~tD~lGRV~L~D~~~~~vvrmwK-----GyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~  378 (414)
                      ...+.+++.+|   ++++++++...|+|.++|+.++..++.++     ++.+    .+....-.+.              
T Consensus       209 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~--------------  270 (357)
T 3i2n_A          209 KNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKS----TVWQVRHLPQ--------------  270 (357)
T ss_dssp             SSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSS----CEEEEEEETT--------------
T ss_pred             CCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcC----CEEEEEECCC--------------
Confidence            35678899999   89999999999999999999988777665     6655    2222111110              


Q ss_pred             eEEEEEEcCCCCeEEEeeCCCCcce
Q 015021          379 CLCLAIHAPRKGIIEHLAGMADENW  403 (414)
Q Consensus       379 ~l~LvIyaprRg~lEvW~~~~g~~v  403 (414)
                      .-.+++-+..+|.|.||+++++...
T Consensus       271 ~~~~l~~~~~dg~i~iwd~~~~~~~  295 (357)
T 3i2n_A          271 NRELFLTAGGAGGLHLWKYEYPIQR  295 (357)
T ss_dssp             EEEEEEEEETTSEEEEEEEECCSCC
T ss_pred             CCcEEEEEeCCCcEEEeecCCCccc
Confidence            1136677788999999999976543

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=97.54  E-value=0.0065  Score=66.92  Aligned_cols=89  Identities=16%  Similarity=0.170  Sum_probs=64.1

Q ss_pred             eeeeccCcceeeeeecceEEEEeecCCCCCc-eeecccCCCCCCCeEEEEEeEEeCCcEEEEEeccccEEEEEe-cCCcE
Q 015021           34 NLLCALDMHTIALANRYQTVIINWADPEGLV-AKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYD-LKGDL  111 (414)
Q Consensus        34 ~~~~sp~~~~la~A~~~~~v~~~w~~~~~~~-v~~~g~l~~~~~e~ITs~~~lpl~dw~~I~VG~ssG~vrfyt-e~G~L  111 (414)
                      .++.||++++||.+....-|. =|+-..... -++.+     ....|+++.+.|-.+..+++.|..+|.|++|+ ++|..
T Consensus       662 ~~~~s~~~~~l~s~~~d~~v~-vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~  735 (1249)
T 3sfz_A          662 CCAFSSDDSYIATCSADKKVK-IWDSATGKLVHTYDE-----HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC  735 (1249)
T ss_dssp             EEEECTTSSEEEEEETTSEEE-EEETTTCCEEEEEEC-----CSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE
T ss_pred             EEEEecCCCEEEEEeCCCeEE-EEECCCCceEEEEcC-----CCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch
Confidence            367788998888877654322 244332111 12222     25679999888877788999999999999999 68888


Q ss_pred             EeecccCccceeEEEEe
Q 015021          112 VHRQLIHPGRILKLRVR  128 (414)
Q Consensus       112 L~sQ~lh~~pV~~ik~r  128 (414)
                      +..-.-|..+|..+.+-
T Consensus       736 ~~~~~~h~~~v~~~~~s  752 (1249)
T 3sfz_A          736 RNTMFGHTNSVNHCRFS  752 (1249)
T ss_dssp             EEEECCCSSCEEEEEEC
T ss_pred             hheecCCCCCEEEEEEe
Confidence            87777889999988853

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=97.48  E-value=0.0004  Score=65.76  Aligned_cols=85  Identities=15%  Similarity=0.083  Sum_probs=66.9

Q ss_pred             ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEE
Q 015021          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL  382 (414)
Q Consensus       303 l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~L  382 (414)
                      +......+.+++.+|+++++|++...|.|.++|+.++..++.++|+.+    ++....-.+++            .   +
T Consensus       202 ~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~----~v~~~~~sp~~------------~---~  262 (321)
T 3ow8_A          202 LEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS----WVLNVAFCPDD------------T---H  262 (321)
T ss_dssp             ECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSS----CEEEEEECTTS------------S---E
T ss_pred             EcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCC----ceEEEEECCCC------------C---E
Confidence            444555678899999999999999999999999999999999999987    55433221111            1   3


Q ss_pred             EEEcCCCCeEEEeeCCCCcceeec
Q 015021          383 AIHAPRKGIIEHLAGMADENWTTS  406 (414)
Q Consensus       383 vIyaprRg~lEvW~~~~g~~v~~~  406 (414)
                      ++.+..+|.|.||++++++++.+-
T Consensus       263 l~s~s~D~~v~iwd~~~~~~~~~~  286 (321)
T 3ow8_A          263 FVSSSSDKSVKVWDVGTRTCVHTF  286 (321)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EEEEeCCCcEEEEeCCCCEEEEEE
Confidence            456788999999999999988653

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=97.48  E-value=0.00045  Score=64.30  Aligned_cols=86  Identities=13%  Similarity=0.049  Sum_probs=67.2

Q ss_pred             ccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceE
Q 015021          301 TCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCL  380 (414)
Q Consensus       301 ~~l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l  380 (414)
                      ..|..+...+.+|+.+|+|+++|++...|.|.|+|+.++..++.++++...    +....-.+++         +     
T Consensus         7 ~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~----v~~~~~~~~~---------~-----   68 (304)
T 2ynn_A            7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETP----VRAGKFIARK---------N-----   68 (304)
T ss_dssp             EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC----EEEEEEEGGG---------T-----
T ss_pred             EeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCc----EEEEEEeCCC---------C-----
Confidence            357777788999999999999999999999999999999999999988762    2221111111         1     


Q ss_pred             EEEEEcCCCCeEEEeeCCCCcceee
Q 015021          381 CLAIHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       381 ~LvIyaprRg~lEvW~~~~g~~v~~  405 (414)
                       +++-+..+|.|.||++++|+++.+
T Consensus        69 -~l~s~s~d~~i~vwd~~~~~~~~~   92 (304)
T 2ynn_A           69 -WIIVGSDDFRIRVFNYNTGEKVVD   92 (304)
T ss_dssp             -EEEEEETTSEEEEEETTTCCEEEE
T ss_pred             -EEEEECCCCEEEEEECCCCcEEEE
Confidence             456678899999999999998743

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=97.44  E-value=0.0093  Score=55.56  Aligned_cols=87  Identities=14%  Similarity=0.048  Sum_probs=56.2

Q ss_pred             ccCCCceeeEEEECCCCC-EEEEEcCCCcEEEEEcCcce-eEeeecccccc-----------eeeEEEEEeccccccccc
Q 015021          303 LKDHPRKGERLTLSPSGS-LAAITDSLGRILLLDTQALV-VVRLWKGYRDA-----------SCVFMEMLVNKDAATSSA  369 (414)
Q Consensus       303 l~D~~R~~~~i~~sP~~~-laa~tD~lGRV~L~D~~~~~-vvrmwKGyRdA-----------q~~wi~~~~~~~~~~~~~  369 (414)
                      +......+.+++.+|+++ ++++++..|.|.++|+.++. .++.+++....           .-+.+....-.+      
T Consensus       182 ~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------  255 (408)
T 4a11_B          182 LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS------  255 (408)
T ss_dssp             ECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT------
T ss_pred             ecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC------
Confidence            444556688999999997 68899999999999998876 55555333211           001221111100      


Q ss_pred             ccCCCCCcceEEEEEEcCCCCeEEEeeCCCCccee
Q 015021          370 YYAPVKSDYCLCLAIHAPRKGIIEHLAGMADENWT  404 (414)
Q Consensus       370 ~~~~~k~~~~l~LvIyaprRg~lEvW~~~~g~~v~  404 (414)
                             +..  +++-+-.+|.|.+|++++++.+.
T Consensus       256 -------~~~--~l~~~~~dg~i~vwd~~~~~~~~  281 (408)
T 4a11_B          256 -------DGL--HLLTVGTDNRMRLWNSSNGENTL  281 (408)
T ss_dssp             -------TSS--EEEEEETTSCEEEEETTTCCBCC
T ss_pred             -------CCC--EEEEecCCCeEEEEECCCCccce
Confidence                   001  34456679999999999998764

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=97.43  E-value=0.0008  Score=61.93  Aligned_cols=86  Identities=13%  Similarity=0.095  Sum_probs=68.0

Q ss_pred             ccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceE
Q 015021          301 TCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCL  380 (414)
Q Consensus       301 ~~l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l  380 (414)
                      ..+..+...+.+++.+|+|+++|++...|.|.++|+.++..++..+|+...    +....-.++         ++     
T Consensus        17 ~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~----v~~~~~~~~---------~~-----   78 (312)
T 4ery_A           17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG----ISDVAWSSD---------SN-----   78 (312)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC----EEEEEECTT---------SS-----
T ss_pred             EEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCc----eEEEEEcCC---------CC-----
Confidence            457788889999999999999999999999999999999999999998873    221111111         11     


Q ss_pred             EEEEEcCCCCeEEEeeCCCCcceee
Q 015021          381 CLAIHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       381 ~LvIyaprRg~lEvW~~~~g~~v~~  405 (414)
                       +++.+-.+|.|.||++++++++.+
T Consensus        79 -~l~s~~~d~~i~vwd~~~~~~~~~  102 (312)
T 4ery_A           79 -LLVSASDDKTLKIWDVSSGKCLKT  102 (312)
T ss_dssp             -EEEEEETTSEEEEEETTTCCEEEE
T ss_pred             -EEEEECCCCEEEEEECCCCcEEEE
Confidence             456677899999999999987743

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=97.42  E-value=0.00071  Score=65.31  Aligned_cols=83  Identities=8%  Similarity=0.043  Sum_probs=64.4

Q ss_pred             cccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEee-ecccccceeeEEEEEecccccccccccCCCCCcceE
Q 015021          302 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRL-WKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCL  380 (414)
Q Consensus       302 ~l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrm-wKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l  380 (414)
                      .+......+.+++.||+|+++|++...|.|.|+|+.++..++- .+||.+    +|....=.+++         +     
T Consensus       264 ~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~----~V~~v~fSpdg---------~-----  325 (365)
T 4h5i_A          264 QVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSF----AITEVTISPDS---------T-----  325 (365)
T ss_dssp             EEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSS----CEEEEEECTTS---------C-----
T ss_pred             eecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccC----CEEEEEECCCC---------C-----
Confidence            3566667789999999999999999999999999999999875 689988    45443322221         1     


Q ss_pred             EEEEEcCCCCeEEEeeCCCCcce
Q 015021          381 CLAIHAPRKGIIEHLAGMADENW  403 (414)
Q Consensus       381 ~LvIyaprRg~lEvW~~~~g~~v  403 (414)
                       +++-+..+|.|.||++...-.-
T Consensus       326 -~laS~S~D~tvrvw~ip~~~~~  347 (365)
T 4h5i_A          326 -YVASVSAANTIHIIKLPLNYAN  347 (365)
T ss_dssp             -EEEEEETTSEEEEEECCTTTTC
T ss_pred             -EEEEEeCCCeEEEEEcCCCCcC
Confidence             4567899999999999765433

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=97.39  E-value=0.00071  Score=64.02  Aligned_cols=84  Identities=18%  Similarity=0.107  Sum_probs=63.7

Q ss_pred             ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEE
Q 015021          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL  382 (414)
Q Consensus       303 l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~L  382 (414)
                      +........+++.+|+|+++|+....|.|.++|+.++..++.++|+...    +....-.++         +      -+
T Consensus       160 ~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~----v~~l~~spd---------~------~~  220 (321)
T 3ow8_A          160 LDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMP----IRSLTFSPD---------S------QL  220 (321)
T ss_dssp             EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC----CCEEEECTT---------S------CE
T ss_pred             ecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCc----eeEEEEcCC---------C------CE
Confidence            3334456788999999999999999999999999999999999998762    211111111         1      14


Q ss_pred             EEEcCCCCeEEEeeCCCCcceee
Q 015021          383 AIHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       383 vIyaprRg~lEvW~~~~g~~v~~  405 (414)
                      ++.+..+|.|.||++++++++.+
T Consensus       221 l~s~s~dg~i~iwd~~~~~~~~~  243 (321)
T 3ow8_A          221 LVTASDDGYIKIYDVQHANLAGT  243 (321)
T ss_dssp             EEEECTTSCEEEEETTTCCEEEE
T ss_pred             EEEEcCCCeEEEEECCCcceeEE
Confidence            56788899999999999887644

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=97.32  E-value=0.00088  Score=65.43  Aligned_cols=86  Identities=13%  Similarity=0.203  Sum_probs=69.7

Q ss_pred             ccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceE
Q 015021          301 TCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCL  380 (414)
Q Consensus       301 ~~l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l  380 (414)
                      ..+..+...+.+++.+|++++++++...|.|.++|+.++..++.++|+++    |+......+++               
T Consensus       186 ~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~----~v~~~~~~~~g---------------  246 (410)
T 1vyh_C          186 RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE----WVRMVRPNQDG---------------  246 (410)
T ss_dssp             ECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSS----CEEEEEECTTS---------------
T ss_pred             EEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCc----cEEEEEECCCC---------------
Confidence            34566677899999999999999999999999999999999999999998    66655432211               


Q ss_pred             EEEEEcCCCCeEEEeeCCCCcceee
Q 015021          381 CLAIHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       381 ~LvIyaprRg~lEvW~~~~g~~v~~  405 (414)
                      -+++-+..+|.|.||++++++++.+
T Consensus       247 ~~l~s~s~D~~v~vwd~~~~~~~~~  271 (410)
T 1vyh_C          247 TLIASCSNDQTVRVWVVATKECKAE  271 (410)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             CEEEEEcCCCeEEEEECCCCceeeE
Confidence            1456677899999999999987643

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=97.32  E-value=0.025  Score=55.22  Aligned_cols=78  Identities=13%  Similarity=-0.057  Sum_probs=43.4

Q ss_pred             CCceeeEEEECCCCCEEEEE-cCCCcEEEEEcCcceeEeeec-ccccceeeEEEEEecccccccccccCCCCCcceEEEE
Q 015021          306 HPRKGERLTLSPSGSLAAIT-DSLGRILLLDTQALVVVRLWK-GYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLA  383 (414)
Q Consensus       306 ~~R~~~~i~~sP~~~laa~t-D~lGRV~L~D~~~~~vvrmwK-GyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~Lv  383 (414)
                      .......+..+|++++.+++ ...+.|-++|+.+|.++.... |+... +.-+....  ++         +  .   +|+
T Consensus       354 ~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~-v~s~~~fs--pd---------g--~---~la  416 (435)
T 4e54_B          354 PRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSG-ISSLNEFN--PM---------G--D---TLA  416 (435)
T ss_dssp             SSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCC-CCCEEEEC--TT---------S--S---CEE
T ss_pred             CCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCc-EEEEEEEC--CC---------C--C---EEE
Confidence            33444556677888665554 445568899999999887654 44432 11111110  10         1  1   343


Q ss_pred             EEcCCCCeEEEeeCCCCcc
Q 015021          384 IHAPRKGIIEHLAGMADEN  402 (414)
Q Consensus       384 IyaprRg~lEvW~~~~g~~  402 (414)
                       -+ .++.|.||+++.|+.
T Consensus       417 -sg-~d~~i~iW~~~~gk~  433 (435)
T 4e54_B          417 -SA-MGYHILIWSQQEART  433 (435)
T ss_dssp             -EE-CSSEEEECCCC----
T ss_pred             -EE-cCCcEEEEECCcCee
Confidence             34 488999999999874

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=97.31  E-value=0.043  Score=50.12  Aligned_cols=44  Identities=16%  Similarity=0.175  Sum_probs=39.9

Q ss_pred             CceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeeccc-cc
Q 015021          307 PRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGY-RD  350 (414)
Q Consensus       307 ~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGy-Rd  350 (414)
                      ...+.+++.+|+++++++++..|+|.++|+.++..++.++++ .+
T Consensus       251 ~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~  295 (342)
T 1yfq_A          251 AYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNED  295 (342)
T ss_dssp             CCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSS
T ss_pred             ceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCC
Confidence            346788999999999999999999999999999999999998 55

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=97.28  E-value=0.0012  Score=61.86  Aligned_cols=86  Identities=16%  Similarity=0.154  Sum_probs=66.7

Q ss_pred             CCccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcc
Q 015021          299 PLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDY  378 (414)
Q Consensus       299 pl~~l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~  378 (414)
                      |+..|..+...+..++.+|+|++++++...|.|.|+|+.++..++.++|+.+.    +....-.+++             
T Consensus        57 ~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~----v~~~~~~~~~-------------  119 (319)
T 3frx_A           57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSD----VMSVDIDKKA-------------  119 (319)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC----EEEEEECTTS-------------
T ss_pred             cceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCc----EEEEEEcCCC-------------
Confidence            34557778888999999999999999999999999999999999999999873    3222211111             


Q ss_pred             eEEEEEEcCCCCeEEEeeCCCCccee
Q 015021          379 CLCLAIHAPRKGIIEHLAGMADENWT  404 (414)
Q Consensus       379 ~l~LvIyaprRg~lEvW~~~~g~~v~  404 (414)
                        -+++-+..+|.|.||+++ ++++.
T Consensus       120 --~~l~s~s~D~~i~vwd~~-~~~~~  142 (319)
T 3frx_A          120 --SMIISGSRDKTIKVWTIK-GQCLA  142 (319)
T ss_dssp             --CEEEEEETTSCEEEEETT-SCEEE
T ss_pred             --CEEEEEeCCCeEEEEECC-CCeEE
Confidence              156778899999999996 44443

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.26  E-value=0.049  Score=52.78  Aligned_cols=73  Identities=10%  Similarity=0.009  Sum_probs=55.1

Q ss_pred             eeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEEEcCCC
Q 015021          310 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRK  389 (414)
Q Consensus       310 ~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprR  389 (414)
                      +.++..  ++++++++...|.|.++|+.++..++.++|+...-..+-.    .           ++      +++-+..+
T Consensus       282 v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~----~-----------~~------~l~~~~~d  338 (445)
T 2ovr_B          282 VYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL----K-----------DN------ILVSGNAD  338 (445)
T ss_dssp             EEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE----E-----------TT------EEEEEETT
T ss_pred             eEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE----e-----------CC------EEEEEeCC
Confidence            444444  7889999999999999999999999999998874332211    0           01      34556689


Q ss_pred             CeEEEeeCCCCcceee
Q 015021          390 GIIEHLAGMADENWTT  405 (414)
Q Consensus       390 g~lEvW~~~~g~~v~~  405 (414)
                      |.|.+|++++|+++.+
T Consensus       339 g~i~vwd~~~~~~~~~  354 (445)
T 2ovr_B          339 STVKIWDIKTGQCLQT  354 (445)
T ss_dssp             SCEEEEETTTCCEEEE
T ss_pred             CeEEEEECCCCcEEEE
Confidence            9999999999988754

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=97.24  E-value=0.0015  Score=63.08  Aligned_cols=80  Identities=13%  Similarity=0.058  Sum_probs=62.5

Q ss_pred             CCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEEE
Q 015021          306 HPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIH  385 (414)
Q Consensus       306 ~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIy  385 (414)
                      ....+.+++.+|+|+++|++...|.|.|+|+.++..++.++|+.+.    +....-.+++           .    +++.
T Consensus       122 ~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~----v~~~~~~p~~-----------~----~l~s  182 (393)
T 1erj_A          122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQD----IYSLDYFPSG-----------D----KLVS  182 (393)
T ss_dssp             CCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC----EEEEEECTTS-----------S----EEEE
T ss_pred             CceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCC----EEEEEEcCCC-----------C----EEEE
Confidence            3445789999999999999999999999999999999999999873    3322211111           1    3467


Q ss_pred             cCCCCeEEEeeCCCCccee
Q 015021          386 APRKGIIEHLAGMADENWT  404 (414)
Q Consensus       386 aprRg~lEvW~~~~g~~v~  404 (414)
                      +..+|.|.+|++++|+++.
T Consensus       183 ~s~d~~v~iwd~~~~~~~~  201 (393)
T 1erj_A          183 GSGDRTVRIWDLRTGQCSL  201 (393)
T ss_dssp             EETTSEEEEEETTTTEEEE
T ss_pred             ecCCCcEEEEECCCCeeEE
Confidence            7889999999999998763

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=97.22  E-value=0.012  Score=57.49  Aligned_cols=84  Identities=11%  Similarity=-0.017  Sum_probs=56.6

Q ss_pred             cCCCceeeEEEECCCCC-EEEEEcCCCcEEEEEcCcceeEee---ecccccceeeEEEEEecccccccccccCCCCCcce
Q 015021          304 KDHPRKGERLTLSPSGS-LAAITDSLGRILLLDTQALVVVRL---WKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYC  379 (414)
Q Consensus       304 ~D~~R~~~~i~~sP~~~-laa~tD~lGRV~L~D~~~~~vvrm---wKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~  379 (414)
                      .-+...+.+|+.+|++. +++++...|.|.++|+.++.....   ..|+.+    .|....-.++         +    .
T Consensus       247 ~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~----~v~~~~~spd---------g----~  309 (435)
T 4e54_B          247 RMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRH----PVNAACFSPD---------G----A  309 (435)
T ss_dssp             BCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSS----CEEECCBCTT---------S----S
T ss_pred             ecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccc----cccceeECCC---------C----C
Confidence            33455678999999985 788888899999999988764433   245554    3322211111         1    1


Q ss_pred             EEEEEEcCCCCeEEEeeCCCCcceeec
Q 015021          380 LCLAIHAPRKGIIEHLAGMADENWTTS  406 (414)
Q Consensus       380 l~LvIyaprRg~lEvW~~~~g~~v~~~  406 (414)
                        +++-+-.+|.|.||++++|++..+.
T Consensus       310 --~l~s~~~D~~i~iwd~~~~~~~~~~  334 (435)
T 4e54_B          310 --RLLTTDQKSEIRVYSASQWDCPLGL  334 (435)
T ss_dssp             --EEEEEESSSCEEEEESSSSSSEEEE
T ss_pred             --eeEEEcCCCEEEEEECCCCccceEE
Confidence              3355778999999999999877543

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=97.19  E-value=0.0018  Score=62.18  Aligned_cols=84  Identities=12%  Similarity=0.077  Sum_probs=64.6

Q ss_pred             ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEE
Q 015021          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL  382 (414)
Q Consensus       303 l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~L  382 (414)
                      +..+...+.+|+.+|+|++++++...|.|.++|+.++..++.++|+.+.    +....-...+           +   .+
T Consensus       135 ~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~----v~~v~~s~~~-----------~---~~  196 (357)
T 4g56_B          135 KYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSE----VNCVAACPGK-----------D---TI  196 (357)
T ss_dssp             ECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC----EEEEEECTTC-----------S---SC
T ss_pred             cCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCC----EEEEEEccCC-----------C---ce
Confidence            4455677889999999999999999999999999999999999998873    3322211110           1   13


Q ss_pred             EEEcCCCCeEEEeeCCCCccee
Q 015021          383 AIHAPRKGIIEHLAGMADENWT  404 (414)
Q Consensus       383 vIyaprRg~lEvW~~~~g~~v~  404 (414)
                      ++.+..+|.|.||++++++.+.
T Consensus       197 ~~s~~~dg~v~~wd~~~~~~~~  218 (357)
T 4g56_B          197 FLSCGEDGRILLWDTRKPKPAT  218 (357)
T ss_dssp             EEEEETTSCEEECCTTSSSCBC
T ss_pred             eeeeccCCceEEEECCCCceee
Confidence            4566789999999999988764

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=97.18  E-value=0.0012  Score=62.66  Aligned_cols=84  Identities=15%  Similarity=0.091  Sum_probs=66.2

Q ss_pred             ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEE
Q 015021          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL  382 (414)
Q Consensus       303 l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~L  382 (414)
                      +..+...+.+++.+|++++++++...|.|.++|+.++..++.++|+.+    .+....-.+++         +      +
T Consensus       135 ~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~----~v~~~~~~~~~---------~------~  195 (420)
T 3vl1_A          135 DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRA----TVTDIAIIDRG---------R------N  195 (420)
T ss_dssp             TTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSS----CEEEEEEETTT---------T------E
T ss_pred             cccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCC----cEEEEEEcCCC---------C------E
Confidence            456667889999999999999999999999999999999999999887    33322211111         1      3


Q ss_pred             EEEcCCCCeEEEeeCCCCcceee
Q 015021          383 AIHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       383 vIyaprRg~lEvW~~~~g~~v~~  405 (414)
                      ++.+-.+|.|.+|++++|+.+.+
T Consensus       196 l~s~~~d~~v~iwd~~~~~~~~~  218 (420)
T 3vl1_A          196 VLSASLDGTIRLWECGTGTTIHT  218 (420)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEE
T ss_pred             EEEEcCCCcEEEeECCCCceeEE
Confidence            45778899999999999988754

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=97.14  E-value=0.0022  Score=61.36  Aligned_cols=83  Identities=19%  Similarity=0.197  Sum_probs=63.7

Q ss_pred             CccccCCCceeeEEEECCCCCEEEEEcCCCc-EEEEEcCcceeEeeec-c-cccceeeEEEEEecccccccccccCCCCC
Q 015021          300 LTCLKDHPRKGERLTLSPSGSLAAITDSLGR-ILLLDTQALVVVRLWK-G-YRDASCVFMEMLVNKDAATSSAYYAPVKS  376 (414)
Q Consensus       300 l~~l~D~~R~~~~i~~sP~~~laa~tD~lGR-V~L~D~~~~~vvrmwK-G-yRdAq~~wi~~~~~~~~~~~~~~~~~~k~  376 (414)
                      +..+..+...+.+|+.+|+|+++|++...|. |.|+|+.++..++.++ | +.+ .+.-+..   .+++         + 
T Consensus       188 ~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~-~v~~~~~---s~~~---------~-  253 (355)
T 3vu4_A          188 GVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRA-DVVDMKW---STDG---------S-  253 (355)
T ss_dssp             CEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCS-CEEEEEE---CTTS---------C-
T ss_pred             cEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCC-cEEEEEE---CCCC---------C-
Confidence            4557778888999999999999999999998 9999999999999998 7 654 2222222   1111         1 


Q ss_pred             cceEEEEEEcCCCCeEEEeeCCCCc
Q 015021          377 DYCLCLAIHAPRKGIIEHLAGMADE  401 (414)
Q Consensus       377 ~~~l~LvIyaprRg~lEvW~~~~g~  401 (414)
                           +++-+..+|.|.||+++++.
T Consensus       254 -----~l~s~s~d~~v~iw~~~~~~  273 (355)
T 3vu4_A          254 -----KLAVVSDKWTLHVFEIFNDQ  273 (355)
T ss_dssp             -----EEEEEETTCEEEEEESSCCS
T ss_pred             -----EEEEEECCCEEEEEEccCCC
Confidence                 34566779999999998764

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=97.10  E-value=0.003  Score=57.30  Aligned_cols=84  Identities=14%  Similarity=0.106  Sum_probs=62.9

Q ss_pred             ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEE
Q 015021          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL  382 (414)
Q Consensus       303 l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~L  382 (414)
                      +.........++.+|+++++++++..|.|.++|+.++..++.++++.+    .+....-.+++           .    +
T Consensus       137 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~----~i~~~~~~~~~-----------~----~  197 (337)
T 1gxr_A          137 LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD----GASCIDISNDG-----------T----K  197 (337)
T ss_dssp             EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS----CEEEEEECTTS-----------S----E
T ss_pred             cccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccC----ceEEEEECCCC-----------C----E
Confidence            344455678899999999999999999999999999999999998776    23322211111           1    3


Q ss_pred             EEEcCCCCeEEEeeCCCCcceee
Q 015021          383 AIHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       383 vIyaprRg~lEvW~~~~g~~v~~  405 (414)
                      ++.+-.+|.|.+|++++++.+.+
T Consensus       198 l~~~~~dg~i~~~d~~~~~~~~~  220 (337)
T 1gxr_A          198 LWTGGLDNTVRSWDLREGRQLQQ  220 (337)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEE
T ss_pred             EEEEecCCcEEEEECCCCceEee
Confidence            34566899999999999987743

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=96.97  E-value=0.0046  Score=55.54  Aligned_cols=83  Identities=10%  Similarity=0.012  Sum_probs=62.2

Q ss_pred             cccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcc----eeEeeecccccceeeEEEEEecccccccccccCCCCCc
Q 015021          302 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQAL----VVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSD  377 (414)
Q Consensus       302 ~l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~----~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~  377 (414)
                      .+..+...+.+|+.+|+++++|++...|.|.++|+.++    ..++.++|+.+.    |....-.+          .. +
T Consensus         6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~----v~~~~~~~----------~~-d   70 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSS----IVAIDWAS----------PE-Y   70 (351)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSC----EEEEEECC----------GG-G
T ss_pred             cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCc----EEEEEEcC----------CC-C
Confidence            36677888999999999999999999999999999987    688888998873    32221111          00 0


Q ss_pred             ceEEEEEEcCCCCeEEEeeCCCCc
Q 015021          378 YCLCLAIHAPRKGIIEHLAGMADE  401 (414)
Q Consensus       378 ~~l~LvIyaprRg~lEvW~~~~g~  401 (414)
                      .  -+++-+-.+|.|.||+++.++
T Consensus        71 ~--~~l~s~~~dg~v~vwd~~~~~   92 (351)
T 3f3f_A           71 G--RIIASASYDKTVKLWEEDPDQ   92 (351)
T ss_dssp             C--SEEEEEETTSCEEEEEECTTS
T ss_pred             C--CEEEEEcCCCeEEEEecCCCc
Confidence            0  144566779999999999874

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=96.92  E-value=0.0029  Score=58.41  Aligned_cols=84  Identities=11%  Similarity=-0.005  Sum_probs=63.8

Q ss_pred             ccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcC--cceeEeeecccccceeeEEEEEecccccccccccCCCCCcc
Q 015021          301 TCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQ--ALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDY  378 (414)
Q Consensus       301 ~~l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~--~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~  378 (414)
                      ..+..+...+.+|+.+|+|+++|++...|.|.++|+.  ++..++.++|+.+.    +....-..+          . +.
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~----v~~~~~~~~----------~-~~   69 (379)
T 3jrp_A            5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGP----VWRVDWAHP----------K-FG   69 (379)
T ss_dssp             CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC----EEEEEECCG----------G-GC
T ss_pred             EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCc----EEEEEeCCC----------C-CC
Confidence            4467778889999999999999999999999999998  88899999998773    322211110          0 00


Q ss_pred             eEEEEEEcCCCCeEEEeeCCCCc
Q 015021          379 CLCLAIHAPRKGIIEHLAGMADE  401 (414)
Q Consensus       379 ~l~LvIyaprRg~lEvW~~~~g~  401 (414)
                        -+++-+-.+|.|.||++++++
T Consensus        70 --~~l~s~~~dg~v~iwd~~~~~   90 (379)
T 3jrp_A           70 --TILASCSYDGKVLIWKEENGR   90 (379)
T ss_dssp             --SEEEEEETTSCEEEEEEETTE
T ss_pred             --CEEEEeccCCEEEEEEcCCCc
Confidence              144566779999999999986

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=96.92  E-value=0.0027  Score=59.70  Aligned_cols=81  Identities=22%  Similarity=0.149  Sum_probs=61.4

Q ss_pred             CceeeEEEECCCCCEEEEEcCC---CcEEEEEcCcceeEeeecc-------------cccceeeEEEEEecccccccccc
Q 015021          307 PRKGERLTLSPSGSLAAITDSL---GRILLLDTQALVVVRLWKG-------------YRDASCVFMEMLVNKDAATSSAY  370 (414)
Q Consensus       307 ~R~~~~i~~sP~~~laa~tD~l---GRV~L~D~~~~~vvrmwKG-------------yRdAq~~wi~~~~~~~~~~~~~~  370 (414)
                      .....+|+.+|++++++++...   |.|.++|+.++..++.+++             +.+    .+....-.++      
T Consensus       233 ~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~------  302 (397)
T 1sq9_A          233 SNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS----WVMSLSFNDS------  302 (397)
T ss_dssp             CCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS----CEEEEEECSS------
T ss_pred             CCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCC----cEEEEEECCC------
Confidence            5668899999999999998777   9999999999999999998             655    3332221111      


Q ss_pred             cCCCCCcceEEEEEEcCCCCeEEEeeCCCCcceeec
Q 015021          371 YAPVKSDYCLCLAIHAPRKGIIEHLAGMADENWTTS  406 (414)
Q Consensus       371 ~~~~k~~~~l~LvIyaprRg~lEvW~~~~g~~v~~~  406 (414)
                         +   .   +++-+..+|.|.||++++++++.+-
T Consensus       303 ---~---~---~l~~~~~dg~i~iwd~~~~~~~~~~  329 (397)
T 1sq9_A          303 ---G---E---TLCSAGWDGKLRFWDVKTKERITTL  329 (397)
T ss_dssp             ---S---S---EEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ---C---C---EEEEEeCCCeEEEEEcCCCceeEEE
Confidence               1   1   3445668999999999999888553

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=96.90  E-value=0.0041  Score=59.58  Aligned_cols=88  Identities=13%  Similarity=0.077  Sum_probs=66.9

Q ss_pred             CCccccCCCceeeEEEECCCC-CEEEEEcCCCcEEEEEcCcceeEeee--cccccceeeEEEEEecccccccccccCCCC
Q 015021          299 PLTCLKDHPRKGERLTLSPSG-SLAAITDSLGRILLLDTQALVVVRLW--KGYRDASCVFMEMLVNKDAATSSAYYAPVK  375 (414)
Q Consensus       299 pl~~l~D~~R~~~~i~~sP~~-~laa~tD~lGRV~L~D~~~~~vvrmw--KGyRdAq~~wi~~~~~~~~~~~~~~~~~~k  375 (414)
                      ++..+..+...+..|+.+|++ +++++++..|.|.++|+.++..++.+  +++.+    .+....-.+++          
T Consensus       123 ~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~----~v~~~~~~~~~----------  188 (402)
T 2aq5_A          123 PVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPD----TIYSVDWSRDG----------  188 (402)
T ss_dssp             CSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCS----CEEEEEECTTS----------
T ss_pred             ceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCC----ceEEEEECCCC----------
Confidence            445577778889999999998 69999999999999999999999999  77776    33322211111          


Q ss_pred             CcceEEEEEEcCCCCeEEEeeCCCCcceee
Q 015021          376 SDYCLCLAIHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       376 ~~~~l~LvIyaprRg~lEvW~~~~g~~v~~  405 (414)
                       .    +++.+-.+|.|.||++++|+.+.+
T Consensus       189 -~----~l~~~~~d~~i~iwd~~~~~~~~~  213 (402)
T 2aq5_A          189 -A----LICTSCRDKRVRVIEPRKGTVVAE  213 (402)
T ss_dssp             -S----CEEEEETTSEEEEEETTTTEEEEE
T ss_pred             -C----EEEEEecCCcEEEEeCCCCceeee
Confidence             1    334566899999999999988754

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=96.90  E-value=0.0044  Score=59.64  Aligned_cols=85  Identities=12%  Similarity=0.139  Sum_probs=63.3

Q ss_pred             CCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeec-ccccceeeEEEEEecccccccccccCCCCCcceEEEEE
Q 015021          306 HPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWK-GYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAI  384 (414)
Q Consensus       306 ~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwK-GyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvI  384 (414)
                      ....+.+++.+|++++++++...|.|.++|+.++..++.|+ ++.. .+.-+.....-.           . +.  .+++
T Consensus       213 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~s-----------~-~~--~~l~  277 (437)
T 3gre_A          213 RHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHA-PITHVEVCQFYG-----------K-NS--VIVV  277 (437)
T ss_dssp             GGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCE-EEEEEEECTTTC-----------T-TE--EEEE
T ss_pred             CCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCC-ceEEEEeccccC-----------C-Cc--cEEE
Confidence            44678899999999999999999999999999999999997 6554 222222110000           0 11  3566


Q ss_pred             EcCCCCeEEEeeCCCCcceee
Q 015021          385 HAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       385 yaprRg~lEvW~~~~g~~v~~  405 (414)
                      -+-.+|.|.||++++|+++.+
T Consensus       278 s~~~dg~i~iwd~~~~~~~~~  298 (437)
T 3gre_A          278 GGSSKTFLTIWNFVKGHCQYA  298 (437)
T ss_dssp             EESTTEEEEEEETTTTEEEEE
T ss_pred             EEcCCCcEEEEEcCCCcEEEE
Confidence            788899999999999997754

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=96.89  E-value=0.0063  Score=55.71  Aligned_cols=83  Identities=7%  Similarity=0.059  Sum_probs=60.5

Q ss_pred             ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccc--eeeEEEEEecccccccccccCCCCCcceE
Q 015021          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA--SCVFMEMLVNKDAATSSAYYAPVKSDYCL  380 (414)
Q Consensus       303 l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdA--q~~wi~~~~~~~~~~~~~~~~~~k~~~~l  380 (414)
                      +..+...+.+++.+|+++++++++..|.|.++|+.++..+++ .++.+.  .+.|..   . +             +.  
T Consensus        82 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~v~~~~~~~---~-~-------------~~--  141 (368)
T 3mmy_A           82 QQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQI-AQHDAPVKTIHWIK---A-P-------------NY--  141 (368)
T ss_dssp             EEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEEEE---C-S-------------SC--
T ss_pred             eccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceee-ccccCceEEEEEEe---C-C-------------CC--
Confidence            445566788999999999999999999999999999998885 445442  122221   1 1             01  


Q ss_pred             EEEEEcCCCCeEEEeeCCCCcceee
Q 015021          381 CLAIHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       381 ~LvIyaprRg~lEvW~~~~g~~v~~  405 (414)
                      -+++.+-.+|.|.+|++++++.+.+
T Consensus       142 ~~l~~~~~dg~i~vwd~~~~~~~~~  166 (368)
T 3mmy_A          142 SCVMTGSWDKTLKFWDTRSSNPMMV  166 (368)
T ss_dssp             EEEEEEETTSEEEEECSSCSSCSEE
T ss_pred             CEEEEccCCCcEEEEECCCCcEEEE
Confidence            2456777889999999999887643

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=96.84  E-value=0.0059  Score=57.42  Aligned_cols=79  Identities=9%  Similarity=-0.069  Sum_probs=59.9

Q ss_pred             CceeeEEEECC--CCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEE
Q 015021          307 PRKGERLTLSP--SGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAI  384 (414)
Q Consensus       307 ~R~~~~i~~sP--~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvI  384 (414)
                      ...+..++.+|  ++++++++...|.|.++|+.++..+++.++..+..+.-+...   ++         +      -+++
T Consensus       125 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~---pd---------g------~~la  186 (343)
T 3lrv_A          125 ANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLH---KD---------S------LLLA  186 (343)
T ss_dssp             SSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEEC---TT---------S------CEEE
T ss_pred             CCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEEC---CC---------C------CEEE
Confidence            35688999999  999999999999999999999999888866655443323221   11         1      1445


Q ss_pred             EcCCCCeEEEeeCCCCcce
Q 015021          385 HAPRKGIIEHLAGMADENW  403 (414)
Q Consensus       385 yaprRg~lEvW~~~~g~~v  403 (414)
                      -+-.+|.|.||++++++++
T Consensus       187 sg~~dg~i~iwd~~~~~~~  205 (343)
T 3lrv_A          187 LYSPDGILDVYNLSSPDQA  205 (343)
T ss_dssp             EECTTSCEEEEESSCTTSC
T ss_pred             EEcCCCEEEEEECCCCCCC
Confidence            5678999999999999987

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=96.81  E-value=0.0068  Score=60.17  Aligned_cols=93  Identities=17%  Similarity=0.040  Sum_probs=63.9

Q ss_pred             ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecc-cccceeeEEEEEecccccccccccCCCCCcceEE
Q 015021          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKG-YRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLC  381 (414)
Q Consensus       303 l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKG-yRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~  381 (414)
                      +......+.+++.+|+|+++|+++..|.|.++|+.++..++..+| +.+ .+.-+....... .   ... ..+ +.  -
T Consensus       484 ~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~-~v~~~~~sp~~~-~---~~~-~~~-~~--~  554 (615)
T 1pgu_A          484 KTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTS-KINAISWKPAEK-G---ANE-EEI-EE--D  554 (615)
T ss_dssp             SSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSS-CEEEEEECCCC-----------CC-SC--C
T ss_pred             cCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCC-ceeEEEEcCccc-c---ccc-ccc-CC--C
Confidence            455667789999999999999999999999999999999999988 544 333332211000 0   000 000 01  1


Q ss_pred             EEEEcCCCCeEEEeeCCCC-ccee
Q 015021          382 LAIHAPRKGIIEHLAGMAD-ENWT  404 (414)
Q Consensus       382 LvIyaprRg~lEvW~~~~g-~~v~  404 (414)
                      +++-+-.+|.|.||+++++ +++.
T Consensus       555 ~l~~~~~dg~i~iw~~~~~~~~~~  578 (615)
T 1pgu_A          555 LVATGSLDTNIFIYSVKRPMKIIK  578 (615)
T ss_dssp             EEEEEETTSCEEEEESSCTTCCEE
T ss_pred             EEEEEcCCCcEEEEECCCCceech
Confidence            4556778999999999998 5554

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=96.79  E-value=0.0042  Score=56.99  Aligned_cols=83  Identities=12%  Similarity=0.043  Sum_probs=62.9

Q ss_pred             cccCCCceeeEEEECC-CCCEEEEEcCCCcEEEEEcCcceeEeee---cccccceeeEEEEEecccccccccccCCCCCc
Q 015021          302 CLKDHPRKGERLTLSP-SGSLAAITDSLGRILLLDTQALVVVRLW---KGYRDASCVFMEMLVNKDAATSSAYYAPVKSD  377 (414)
Q Consensus       302 ~l~D~~R~~~~i~~sP-~~~laa~tD~lGRV~L~D~~~~~vvrmw---KGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~  377 (414)
                      .+......+..|+.+| ++++++++...|.|.++|+.++..++.+   +++.+    .+....-.+++           .
T Consensus       110 ~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~-----------~  174 (366)
T 3k26_A          110 HYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD----EVLSADYDLLG-----------E  174 (366)
T ss_dssp             EEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSS----CEEEEEECTTS-----------S
T ss_pred             eecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccC----ceeEEEECCCC-----------C
Confidence            4556677889999999 8899999999999999999999999999   56655    33322211111           1


Q ss_pred             ceEEEEEEcCCCCeEEEeeCCCCcce
Q 015021          378 YCLCLAIHAPRKGIIEHLAGMADENW  403 (414)
Q Consensus       378 ~~l~LvIyaprRg~lEvW~~~~g~~v  403 (414)
                          +++.+-.+|.|.+|++++++.+
T Consensus       175 ----~l~~~~~dg~i~i~d~~~~~~~  196 (366)
T 3k26_A          175 ----KIMSCGMDHSLKLWRINSKRMM  196 (366)
T ss_dssp             ----EEEEEETTSCEEEEESCSHHHH
T ss_pred             ----EEEEecCCCCEEEEECCCCccc
Confidence                3456667999999999988765

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=96.76  E-value=0.0087  Score=57.28  Aligned_cols=86  Identities=10%  Similarity=0.026  Sum_probs=65.0

Q ss_pred             cccCCCceeeEEEECC-CCCEEEEEcCCCcEEEEEcCcc-------eeEeeecccccceeeEEEEEecccccccccccCC
Q 015021          302 CLKDHPRKGERLTLSP-SGSLAAITDSLGRILLLDTQAL-------VVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAP  373 (414)
Q Consensus       302 ~l~D~~R~~~~i~~sP-~~~laa~tD~lGRV~L~D~~~~-------~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~  373 (414)
                      .+..+...+..++.+| +++++|++...|.|.++|+.++       ..++.++|+.+    .+....-.+.+        
T Consensus        76 ~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~----~v~~~~~~p~~--------  143 (402)
T 2aq5_A           76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTK----RVGIVAWHPTA--------  143 (402)
T ss_dssp             CBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSS----CEEEEEECSSB--------
T ss_pred             eEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCC----eEEEEEECcCC--------
Confidence            3556677899999999 8899999999999999999998       67888888876    23222211110        


Q ss_pred             CCCcceEEEEEEcCCCCeEEEeeCCCCcceee
Q 015021          374 VKSDYCLCLAIHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       374 ~k~~~~l~LvIyaprRg~lEvW~~~~g~~v~~  405 (414)
                       +     .+++-+..+|.|.||++++|+.+.+
T Consensus       144 -~-----~~l~s~~~dg~i~iwd~~~~~~~~~  169 (402)
T 2aq5_A          144 -Q-----NVLLSAGCDNVILVWDVGTGAAVLT  169 (402)
T ss_dssp             -T-----TEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             -C-----CEEEEEcCCCEEEEEECCCCCccEE
Confidence             0     1456677899999999999988744

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.75  E-value=0.0047  Score=64.26  Aligned_cols=86  Identities=12%  Similarity=0.045  Sum_probs=65.9

Q ss_pred             ccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceE
Q 015021          301 TCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCL  380 (414)
Q Consensus       301 ~~l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l  380 (414)
                      ..|..+...+.+|+.+|+|+++|++...|.|.++|+.++..++..+|+...    +....-.+++         +     
T Consensus         7 ~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~----v~~~~~s~~~---------~-----   68 (814)
T 3mkq_A            7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETP----VRAGKFIARK---------N-----   68 (814)
T ss_dssp             EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC----EEEEEEEGGG---------T-----
T ss_pred             eeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCc----EEEEEEeCCC---------C-----
Confidence            346667778999999999999999999999999999999999999988763    2222111111         1     


Q ss_pred             EEEEEcCCCCeEEEeeCCCCcceee
Q 015021          381 CLAIHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       381 ~LvIyaprRg~lEvW~~~~g~~v~~  405 (414)
                       +++.+..+|.|.||++++|+++.+
T Consensus        69 -~l~~~~~dg~i~vw~~~~~~~~~~   92 (814)
T 3mkq_A           69 -WIIVGSDDFRIRVFNYNTGEKVVD   92 (814)
T ss_dssp             -EEEEEETTSEEEEEETTTCCEEEE
T ss_pred             -EEEEEeCCCeEEEEECCCCcEEEE
Confidence             334456699999999999998754

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=96.72  E-value=0.22  Score=52.91  Aligned_cols=68  Identities=4%  Similarity=-0.073  Sum_probs=48.4

Q ss_pred             CCCEEEEEcCCCcEEEEEcCcc----eeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEEEcCCCCeEE
Q 015021          318 SGSLAAITDSLGRILLLDTQAL----VVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIE  393 (414)
Q Consensus       318 ~~~laa~tD~lGRV~L~D~~~~----~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lE  393 (414)
                      ++++++++...|.|.++|+.++    .+++..+|+.+    .+....-.+.          ....  -+++.+..+|.|.
T Consensus       169 d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~----~V~~l~~sp~----------~~~~--~~l~s~s~Dg~I~  232 (753)
T 3jro_A          169 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD----WVRDVAWSPT----------VLLR--SYLASVSQDRTCI  232 (753)
T ss_dssp             GGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS----CEEEEEECCC----------CSSS--EEEEEEESSSCEE
T ss_pred             CCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCC----cEEEEEeccC----------CCCC--CEEEEEecCCEEE
Confidence            6889999999999999999887    77788888876    2322221111          0001  2556778899999


Q ss_pred             EeeCCCCc
Q 015021          394 HLAGMADE  401 (414)
Q Consensus       394 vW~~~~g~  401 (414)
                      ||+++.++
T Consensus       233 iwd~~~~~  240 (753)
T 3jro_A          233 IWTQDNEQ  240 (753)
T ss_dssp             EEEESSSS
T ss_pred             EecCCCCC
Confidence            99999874

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=96.69  E-value=0.0078  Score=56.48  Aligned_cols=41  Identities=15%  Similarity=0.142  Sum_probs=38.2

Q ss_pred             CCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeec
Q 015021          306 HPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWK  346 (414)
Q Consensus       306 ~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwK  346 (414)
                      ....+.+++.+|++++++++...|+|.++|+.++..++.++
T Consensus       290 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  330 (397)
T 1sq9_A          290 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN  330 (397)
T ss_dssp             BSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             cCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence            45678899999999999999999999999999999999999

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=96.62  E-value=0.0062  Score=57.27  Aligned_cols=77  Identities=9%  Similarity=0.000  Sum_probs=57.4

Q ss_pred             eeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeE-eeecc-cccceeeEEEEEecccccccccccCCCCCcceEEEEEEc
Q 015021          309 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVV-RLWKG-YRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA  386 (414)
Q Consensus       309 ~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vv-rmwKG-yRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIya  386 (414)
                      ...+++.+|+|+++|+....|.|.++|+.++..+ ..+++ +.+    .+....-.+++            .  +|+.-.
T Consensus       172 ~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~----~v~~l~fs~~g------------~--~l~s~~  233 (343)
T 3lrv_A          172 EYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEA----KIKEVKFADNG------------Y--WMVVEC  233 (343)
T ss_dssp             CCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTS----CEEEEEECTTS------------S--EEEEEE
T ss_pred             ceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCC----CEEEEEEeCCC------------C--EEEEEe
Confidence            3678999999999999999999999999999988 88888 665    34333211111            1  344444


Q ss_pred             CCCCeEEEeeCCCCcceee
Q 015021          387 PRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       387 prRg~lEvW~~~~g~~v~~  405 (414)
                        ++.|.||++++++.+.+
T Consensus       234 --~~~v~iwd~~~~~~~~~  250 (343)
T 3lrv_A          234 --DQTVVCFDLRKDVGTLA  250 (343)
T ss_dssp             --SSBEEEEETTSSTTCBS
T ss_pred             --CCeEEEEEcCCCCccee
Confidence              56999999999987643

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=96.60  E-value=0.0086  Score=56.08  Aligned_cols=86  Identities=15%  Similarity=0.102  Sum_probs=66.4

Q ss_pred             ccccCCCceeeEEEECCCC-CEEEEEcCCCcEEEEEcCc-----ceeEeeecccccceeeEEEEEecccccccccccCCC
Q 015021          301 TCLKDHPRKGERLTLSPSG-SLAAITDSLGRILLLDTQA-----LVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPV  374 (414)
Q Consensus       301 ~~l~D~~R~~~~i~~sP~~-~laa~tD~lGRV~L~D~~~-----~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~  374 (414)
                      ..|..+...+.+|+.+|++ ++++++..+|.|.++|+..     +..++.++|+.+    .+....-.+++         
T Consensus        11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~----~v~~~~~s~dg---------   77 (319)
T 3frx_A           11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH----IVQDCTLTADG---------   77 (319)
T ss_dssp             EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSS----CEEEEEECTTS---------
T ss_pred             EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcc----cEEEEEECCCC---------
Confidence            4577888899999999976 8999999999999999864     567889999988    44332221111         


Q ss_pred             CCcceEEEEEEcCCCCeEEEeeCCCCcceee
Q 015021          375 KSDYCLCLAIHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       375 k~~~~l~LvIyaprRg~lEvW~~~~g~~v~~  405 (414)
                      +      +++-+..+|.|.||++++|+++.+
T Consensus        78 ~------~l~s~s~D~~v~~wd~~~~~~~~~  102 (319)
T 3frx_A           78 A------YALSASWDKTLRLWDVATGETYQR  102 (319)
T ss_dssp             S------EEEEEETTSEEEEEETTTTEEEEE
T ss_pred             C------EEEEEeCCCEEEEEECCCCCeeEE
Confidence            1      456778899999999999988743

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=96.58  E-value=0.008  Score=66.20  Aligned_cols=84  Identities=8%  Similarity=-0.030  Sum_probs=66.3

Q ss_pred             ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEE
Q 015021          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL  382 (414)
Q Consensus       303 l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~L  382 (414)
                      +..+...+..++.+|+|+++|++...|.|.++|+.++..++.++|+.+    ++....-.+++         +      +
T Consensus       611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~----~v~~~~~s~~~---------~------~  671 (1249)
T 3sfz_A          611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHED----EVLCCAFSSDD---------S------Y  671 (1249)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSS----CEEEEEECTTS---------S------E
T ss_pred             EecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCC----CEEEEEEecCC---------C------E
Confidence            556677889999999999999999999999999999999999999887    44433222211         1      3


Q ss_pred             EEEcCCCCeEEEeeCCCCcceee
Q 015021          383 AIHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       383 vIyaprRg~lEvW~~~~g~~v~~  405 (414)
                      ++-+-.+|.|.||++.+|+.+.+
T Consensus       672 l~s~~~d~~v~vwd~~~~~~~~~  694 (1249)
T 3sfz_A          672 IATCSADKKVKIWDSATGKLVHT  694 (1249)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEE
T ss_pred             EEEEeCCCeEEEEECCCCceEEE
Confidence            34456799999999999988754

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=96.58  E-value=0.0056  Score=59.95  Aligned_cols=84  Identities=14%  Similarity=0.061  Sum_probs=63.8

Q ss_pred             cccCCCceeeEEEECCC---CCEEEEEcCCCcEEEEEcCcceeEee-ecccccceeeEEEEEecccccccccccCCCCCc
Q 015021          302 CLKDHPRKGERLTLSPS---GSLAAITDSLGRILLLDTQALVVVRL-WKGYRDASCVFMEMLVNKDAATSSAYYAPVKSD  377 (414)
Q Consensus       302 ~l~D~~R~~~~i~~sP~---~~laa~tD~lGRV~L~D~~~~~vvrm-wKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~  377 (414)
                      .+......+.+|+.+|+   ++++++++..|.|.++|+.++..++. ..|+.+    ++....-.+          ++  
T Consensus       190 ~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~----~v~~~~~sd----------~~--  253 (450)
T 2vdu_B          190 PILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKH----FVSSICCGK----------DY--  253 (450)
T ss_dssp             CSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSS----CEEEEEECS----------TT--
T ss_pred             eeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCC----ceEEEEECC----------CC--
Confidence            34556677889999999   99999999999999999999988877 557775    443322111          11  


Q ss_pred             ceEEEEEEcCCCCeEEEeeCCCCcceee
Q 015021          378 YCLCLAIHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       378 ~~l~LvIyaprRg~lEvW~~~~g~~v~~  405 (414)
                          +++.+..+|.|.||++++|+++.+
T Consensus       254 ----~l~s~~~d~~v~vwd~~~~~~~~~  277 (450)
T 2vdu_B          254 ----LLLSAGGDDKIFAWDWKTGKNLST  277 (450)
T ss_dssp             ----EEEEEESSSEEEEEETTTCCEEEE
T ss_pred             ----EEEEEeCCCeEEEEECCCCcEeee
Confidence                445677899999999999998744

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=96.55  E-value=0.0091  Score=56.25  Aligned_cols=79  Identities=14%  Similarity=0.056  Sum_probs=61.4

Q ss_pred             cccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEE
Q 015021          302 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLC  381 (414)
Q Consensus       302 ~l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~  381 (414)
                      .+..+...+..++.+|++++++++...|.|.|+|+.++..++.++|+.+    .+....-.+++           .    
T Consensus        71 ~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~----~v~~v~~sp~~-----------~----  131 (343)
T 2xzm_R           71 ALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQS----EVYSVAFSPDN-----------R----  131 (343)
T ss_dssp             EECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCS----CEEEEEECSST-----------T----
T ss_pred             hhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCC----cEEEEEECCCC-----------C----
Confidence            4566677789999999999999999999999999999999999999987    33322211111           1    


Q ss_pred             EEEEcCCCCeEEEeeCCC
Q 015021          382 LAIHAPRKGIIEHLAGMA  399 (414)
Q Consensus       382 LvIyaprRg~lEvW~~~~  399 (414)
                      +++-+..+|.|.+|++..
T Consensus       132 ~l~s~~~d~~i~~wd~~~  149 (343)
T 2xzm_R          132 QILSAGAEREIKLWNILG  149 (343)
T ss_dssp             EEEEEETTSCEEEEESSS
T ss_pred             EEEEEcCCCEEEEEeccC
Confidence            345677899999999973

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=96.52  E-value=0.012  Score=56.96  Aligned_cols=80  Identities=15%  Similarity=0.094  Sum_probs=60.0

Q ss_pred             ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEE
Q 015021          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL  382 (414)
Q Consensus       303 l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~L  382 (414)
                      +..+...+.+|+.+|+|+++|+....|.|.|+|+.++..++.++|+...-..+-.    .           .      .+
T Consensus       143 ~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~----~-----------~------~~  201 (420)
T 4gga_A          143 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW----N-----------S------YI  201 (420)
T ss_dssp             CCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE----E-----------T------TE
T ss_pred             ecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEee----C-----------C------CE
Confidence            4455667899999999999999999999999999999999999999874333211    0           0      13


Q ss_pred             EEEcCCCCeEEEeeCCCCcce
Q 015021          383 AIHAPRKGIIEHLAGMADENW  403 (414)
Q Consensus       383 vIyaprRg~lEvW~~~~g~~v  403 (414)
                      +.-+.+++.+.+|+.+.....
T Consensus       202 l~sgs~d~~i~~~d~~~~~~~  222 (420)
T 4gga_A          202 LSSGSRSGHIHHHDVRVAEHH  222 (420)
T ss_dssp             EEEEETTSEEEEEETTSSSCE
T ss_pred             EEEEeCCCceeEeeeccccee
Confidence            445666777777777764443

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=96.48  E-value=0.0097  Score=53.41  Aligned_cols=79  Identities=14%  Similarity=0.098  Sum_probs=59.9

Q ss_pred             CCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEEE
Q 015021          306 HPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIH  385 (414)
Q Consensus       306 ~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIy  385 (414)
                      .......++.+|+++ ++++...|.|.++|+.++..++.++++.+    .+....-.++            .    .++.
T Consensus       183 ~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~i~~~~~~~~------------~----~l~~  241 (313)
T 3odt_A          183 HNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHES----FVYCIKLLPN------------G----DIVS  241 (313)
T ss_dssp             CSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSS----CEEEEEECTT------------S----CEEE
T ss_pred             CcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCc----eEEEEEEecC------------C----CEEE
Confidence            456688999999999 66778899999999999999999998876    3333221110            1    1345


Q ss_pred             cCCCCeEEEeeCCCCcceee
Q 015021          386 APRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       386 aprRg~lEvW~~~~g~~v~~  405 (414)
                      +-.+|.|.+|++++++.+.+
T Consensus       242 ~~~dg~v~iwd~~~~~~~~~  261 (313)
T 3odt_A          242 CGEDRTVRIWSKENGSLKQV  261 (313)
T ss_dssp             EETTSEEEEECTTTCCEEEE
T ss_pred             EecCCEEEEEECCCCceeEE
Confidence            67799999999999987743

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=96.41  E-value=0.017  Score=55.12  Aligned_cols=84  Identities=13%  Similarity=0.094  Sum_probs=59.5

Q ss_pred             ccCCCceeeEEEECCCC-CEEEEEcCCCcEEEEEcCccee----Eeeecccccc-----------eeeEEEEEecccccc
Q 015021          303 LKDHPRKGERLTLSPSG-SLAAITDSLGRILLLDTQALVV----VRLWKGYRDA-----------SCVFMEMLVNKDAAT  366 (414)
Q Consensus       303 l~D~~R~~~~i~~sP~~-~laa~tD~lGRV~L~D~~~~~v----vrmwKGyRdA-----------q~~wi~~~~~~~~~~  366 (414)
                      +......+.+++.+|++ ++++++...|.|.++|+.++..    ++.++++.+-           .+.-+...   ++  
T Consensus       222 ~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---~~--  296 (447)
T 3dw8_B          222 MEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFS---HS--  296 (447)
T ss_dssp             GGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEEC---TT--
T ss_pred             ccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEEC---CC--
Confidence            44455678899999999 9999999999999999999998    8999998762           22222221   10  


Q ss_pred             cccccCCCCCcceEEEEEEcCCCCeEEEeeCCC-Ccceee
Q 015021          367 SSAYYAPVKSDYCLCLAIHAPRKGIIEHLAGMA-DENWTT  405 (414)
Q Consensus       367 ~~~~~~~~k~~~~l~LvIyaprRg~lEvW~~~~-g~~v~~  405 (414)
                             ++     +|+. +-. |.|.||++++ ++.+.+
T Consensus       297 -------g~-----~l~~-~~~-~~v~iwd~~~~~~~~~~  322 (447)
T 3dw8_B          297 -------GR-----YMMT-RDY-LSVKVWDLNMENRPVET  322 (447)
T ss_dssp             -------SS-----EEEE-EES-SEEEEEETTCCSSCSCC
T ss_pred             -------CC-----EEEE-eeC-CeEEEEeCCCCccccce
Confidence                   11     3443 344 9999999998 776643

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=96.41  E-value=0.0089  Score=57.40  Aligned_cols=79  Identities=14%  Similarity=-0.026  Sum_probs=57.3

Q ss_pred             eeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEEEcCCC
Q 015021          310 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRK  389 (414)
Q Consensus       310 ~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprR  389 (414)
                      ..+++.+|+|+++++....|.|.++|+.++..++-.+....+.-++|....-.+++         +      +++-+..+
T Consensus       301 v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg---------~------~l~sgs~D  365 (380)
T 3iz6_a          301 VTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDG---------S------ALCTGSWD  365 (380)
T ss_dssp             CSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSS---------S------EEEEECTT
T ss_pred             eEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCC---------C------EEEEeeCC
Confidence            67899999999999999999999999999988877632222222244332211111         1      45678899


Q ss_pred             CeEEEeeCCCCcce
Q 015021          390 GIIEHLAGMADENW  403 (414)
Q Consensus       390 g~lEvW~~~~g~~v  403 (414)
                      |.|.||++..++++
T Consensus       366 ~~i~iW~~~~~~~i  379 (380)
T 3iz6_a          366 KNLKIWAFSGHRKI  379 (380)
T ss_dssp             SCEEEEECCSSSSC
T ss_pred             CCEEEEecCCCccc
Confidence            99999999988775

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=96.40  E-value=0.018  Score=55.38  Aligned_cols=85  Identities=12%  Similarity=0.014  Sum_probs=63.1

Q ss_pred             ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEE
Q 015021          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL  382 (414)
Q Consensus       303 l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~L  382 (414)
                      +......+..++.+|++++++++...|.|.++|+.++..++.++++.++    +....-.+.+           .   .|
T Consensus       213 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~----v~~~~~~p~~-----------~---~l  274 (401)
T 4aez_A          213 LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAA----VKAVAWCPWQ-----------S---NL  274 (401)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSC----CCEEEECTTS-----------T---TE
T ss_pred             EcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcce----EEEEEECCCC-----------C---CE
Confidence            5556677889999999999999999999999999999999999887762    2222111110           1   13


Q ss_pred             EEEc--CCCCeEEEeeCCCCcceee
Q 015021          383 AIHA--PRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       383 vIya--prRg~lEvW~~~~g~~v~~  405 (414)
                      ++-+  ..+|.|.+|++++|+++.+
T Consensus       275 l~~~~gs~d~~i~i~d~~~~~~~~~  299 (401)
T 4aez_A          275 LATGGGTMDKQIHFWNAATGARVNT  299 (401)
T ss_dssp             EEEECCTTTCEEEEEETTTCCEEEE
T ss_pred             EEEecCCCCCEEEEEECCCCCEEEE
Confidence            3443  3799999999999988743

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.40  E-value=0.011  Score=55.59  Aligned_cols=80  Identities=9%  Similarity=0.118  Sum_probs=56.3

Q ss_pred             cccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCc----ceeEeeecccccceeeEEEEEecccccccccccCCCCCc
Q 015021          302 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQA----LVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSD  377 (414)
Q Consensus       302 ~l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~----~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~  377 (414)
                      .|..+...+.+++.+|+|+++|++...|.|.++|+..    ...++..+|+.+    .+....-.+++            
T Consensus       102 ~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~----~v~~v~~~p~~------------  165 (330)
T 2hes_X          102 IIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQ----DVKHVIWHPSE------------  165 (330)
T ss_dssp             EEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSS----CEEEEEECSSS------------
T ss_pred             EEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCC----ceEEEEECCCC------------
Confidence            4566677889999999999999999999999999942    357788888876    33322211111            


Q ss_pred             ceEEEEEEcCCCCeEEEeeCCCC
Q 015021          378 YCLCLAIHAPRKGIIEHLAGMAD  400 (414)
Q Consensus       378 ~~l~LvIyaprRg~lEvW~~~~g  400 (414)
                         -+++-+..+|.|.+|+++.+
T Consensus       166 ---~~l~s~s~D~~i~iW~~~~~  185 (330)
T 2hes_X          166 ---ALLASSSYDDTVRIWKDYDD  185 (330)
T ss_dssp             ---SEEEEEETTSCEEEEEEETT
T ss_pred             ---CEEEEEcCCCeEEEEECCCC
Confidence               14567788999999998766

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=96.35  E-value=0.02  Score=53.90  Aligned_cols=86  Identities=9%  Similarity=0.110  Sum_probs=65.5

Q ss_pred             ccccCCCceeeEEEE-----CC-CCCEEEEEcCCCcEEEEEcCc-------ceeEeeecccccceeeEEEEEeccccccc
Q 015021          301 TCLKDHPRKGERLTL-----SP-SGSLAAITDSLGRILLLDTQA-------LVVVRLWKGYRDASCVFMEMLVNKDAATS  367 (414)
Q Consensus       301 ~~l~D~~R~~~~i~~-----sP-~~~laa~tD~lGRV~L~D~~~-------~~vvrmwKGyRdAq~~wi~~~~~~~~~~~  367 (414)
                      ..|..+...+.+|+.     +| +++++|++...|.|.|+|+.+       +..++..+|+.+    .+....-.+++  
T Consensus        15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~----~V~~~~~~~~~--   88 (343)
T 2xzm_R           15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNH----FVSDLALSQEN--   88 (343)
T ss_dssp             EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSS----CEEEEEECSST--
T ss_pred             eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCC----ceEEEEECCCC--
Confidence            457778888999998     77 899999999999999999974       567788889887    34332211111  


Q ss_pred             ccccCCCCCcceEEEEEEcCCCCeEEEeeCCCCcceee
Q 015021          368 SAYYAPVKSDYCLCLAIHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       368 ~~~~~~~k~~~~l~LvIyaprRg~lEvW~~~~g~~v~~  405 (414)
                                   .+++-+..+|.|.||++++|+++.+
T Consensus        89 -------------~~l~s~s~D~~v~lwd~~~~~~~~~  113 (343)
T 2xzm_R           89 -------------CFAISSSWDKTLRLWDLRTGTTYKR  113 (343)
T ss_dssp             -------------TEEEEEETTSEEEEEETTSSCEEEE
T ss_pred             -------------CEEEEEcCCCcEEEEECCCCcEEEE
Confidence                         1456788899999999999988744

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=96.33  E-value=0.024  Score=54.38  Aligned_cols=89  Identities=11%  Similarity=0.028  Sum_probs=62.8

Q ss_pred             ccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccce---eeEEEEEecccccccccccCCCCCc
Q 015021          301 TCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDAS---CVFMEMLVNKDAATSSAYYAPVKSD  377 (414)
Q Consensus       301 ~~l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq---~~wi~~~~~~~~~~~~~~~~~~k~~  377 (414)
                      ..+..+...+.+|+.+|+|+++|++...|.|.|+|+.++..++.+++..+..   ..++....-.+          .   
T Consensus       243 ~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~----------~---  309 (380)
T 3iz6_a          243 RTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSI----------S---  309 (380)
T ss_dssp             EEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECS----------S---
T ss_pred             EEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECC----------C---
Confidence            3455566778899999999999999999999999999999999998764421   11111110000          0   


Q ss_pred             ceEEEEEEcCCCCeEEEeeCCCCccee
Q 015021          378 YCLCLAIHAPRKGIIEHLAGMADENWT  404 (414)
Q Consensus       378 ~~l~LvIyaprRg~lEvW~~~~g~~v~  404 (414)
                      ..  +++-+-.+|.|.||++.+++.+.
T Consensus       310 g~--~l~~g~~dg~i~vwd~~~~~~~~  334 (380)
T 3iz6_a          310 GR--LLFAGYSNGDCYVWDTLLAEMVL  334 (380)
T ss_dssp             SS--EEEEECTTSCEEEEETTTCCEEE
T ss_pred             CC--EEEEEECCCCEEEEECCCCceEE
Confidence            11  33446679999999999888763

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=96.29  E-value=0.026  Score=50.88  Aligned_cols=53  Identities=13%  Similarity=0.075  Sum_probs=46.4

Q ss_pred             ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeE
Q 015021          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVF  355 (414)
Q Consensus       303 l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~w  355 (414)
                      +..+...+.+++.+|+|+++|++...|.|.|+|+.++..++.++|+......+
T Consensus        63 ~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~  115 (318)
T 4ggc_A           63 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSL  115 (318)
T ss_dssp             CCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred             ecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEe
Confidence            44566778999999999999999999999999999999999999998855443

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=96.25  E-value=0.69  Score=42.39  Aligned_cols=67  Identities=3%  Similarity=-0.087  Sum_probs=47.7

Q ss_pred             CCCEEEEEcCCCcEEEEEcCcce----eEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEEEcCCCCeEE
Q 015021          318 SGSLAAITDSLGRILLLDTQALV----VVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIE  393 (414)
Q Consensus       318 ~~~laa~tD~lGRV~L~D~~~~~----vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lE  393 (414)
                      +++++|++...|.|.|+|+.++.    .++.++|+.+    ++....-.+.+         . ..  .+++-+..+|.|.
T Consensus       169 ~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~----~V~~v~~sp~~---------~-~~--~~las~s~D~~v~  232 (297)
T 2pm7_B          169 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD----WVRDVAWSPTV---------L-LR--SYMASVSQDRTCI  232 (297)
T ss_dssp             -CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS----CEEEEEECCCC---------S-SS--EEEEEEETTSCEE
T ss_pred             CcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCC----ceEEEEECCCC---------C-Cc--eEEEEEECCCcEE
Confidence            36789999999999999998876    7778899988    55543321110         0 00  2456788899999


Q ss_pred             EeeCCCC
Q 015021          394 HLAGMAD  400 (414)
Q Consensus       394 vW~~~~g  400 (414)
                      ||+++++
T Consensus       233 iWd~~~~  239 (297)
T 2pm7_B          233 IWTQDNE  239 (297)
T ss_dssp             EEEESST
T ss_pred             EEEeCCC
Confidence            9998875

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=96.25  E-value=0.02  Score=58.92  Aligned_cols=84  Identities=11%  Similarity=0.128  Sum_probs=66.8

Q ss_pred             ccCCCceeeEEEECCCCC-EEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEE
Q 015021          303 LKDHPRKGERLTLSPSGS-LAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLC  381 (414)
Q Consensus       303 l~D~~R~~~~i~~sP~~~-laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~  381 (414)
                      |..+.+.+.+++.+|++. ++|++...|.|.|+|..++..++.++|+.+    ++....-.+++         +      
T Consensus       143 l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~----~V~~v~fspdg---------~------  203 (611)
T 1nr0_A          143 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTK----FVHSVRYNPDG---------S------  203 (611)
T ss_dssp             CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSS----CEEEEEECTTS---------S------
T ss_pred             ecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccC----ceEEEEECCCC---------C------
Confidence            556677899999999996 588888899999999999999999999998    56544322211         1      


Q ss_pred             EEEEcCCCCeEEEeeCCCCcceee
Q 015021          382 LAIHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       382 LvIyaprRg~lEvW~~~~g~~v~~  405 (414)
                      +++-+..+|.|.+|++++|+++.+
T Consensus       204 ~las~s~D~~i~lwd~~~g~~~~~  227 (611)
T 1nr0_A          204 LFASTGGDGTIVLYNGVDGTKTGV  227 (611)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEE
T ss_pred             EEEEEECCCcEEEEECCCCcEeee
Confidence            456788899999999999887754

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=96.20  E-value=0.023  Score=52.50  Aligned_cols=82  Identities=9%  Similarity=-0.012  Sum_probs=60.6

Q ss_pred             ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCc--ceeEeeecccccceeeEEEEEecccccccccccCCCCCcceE
Q 015021          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQA--LVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCL  380 (414)
Q Consensus       303 l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~--~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l  380 (414)
                      +.-+...+.+++.+|+|+++|++...|.|.|+|+..  +..++.++|+.+    .|....-..+         ...    
T Consensus         5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~----~V~~v~~s~~---------~~g----   67 (297)
T 2pm7_B            5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEG----PVWRVDWAHP---------KFG----   67 (297)
T ss_dssp             CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSS----CEEEEEECCG---------GGC----
T ss_pred             ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccC----CeEEEEecCC---------CcC----
Confidence            445667788999999999999999999999999974  478899999987    3332211100         000    


Q ss_pred             EEEEEcCCCCeEEEeeCCCCc
Q 015021          381 CLAIHAPRKGIIEHLAGMADE  401 (414)
Q Consensus       381 ~LvIyaprRg~lEvW~~~~g~  401 (414)
                      -+++-+..+|.|.||++++|+
T Consensus        68 ~~l~s~s~D~~v~iWd~~~~~   88 (297)
T 2pm7_B           68 TILASCSYDGKVMIWKEENGR   88 (297)
T ss_dssp             SEEEEEETTTEEEEEEBSSSC
T ss_pred             CEEEEEcCCCEEEEEEcCCCc
Confidence            145677889999999999874

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=96.16  E-value=0.014  Score=57.07  Aligned_cols=83  Identities=11%  Similarity=0.103  Sum_probs=61.0

Q ss_pred             CceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEe----eecccccceeeEEEEEecccccccccccCCCCCcceEEE
Q 015021          307 PRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVR----LWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL  382 (414)
Q Consensus       307 ~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvr----mwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~L  382 (414)
                      ...+.+|+.+|+|+++++++..|+|.++|+.++...+    .++|+.+. +.-+....+.+         ++      -+
T Consensus       149 ~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~sp~~~---------~~------~~  212 (450)
T 2vdu_B          149 SKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSM-LTDVHLIKDSD---------GH------QF  212 (450)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSC-EEEEEEEECTT---------SC------EE
T ss_pred             CCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCc-eEEEEEcCCCC---------CC------cE
Confidence            3557789999999999999999999999999988665    77887752 22222111100         00      25


Q ss_pred             EEEcCCCCeEEEeeCCCCcceee
Q 015021          383 AIHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       383 vIyaprRg~lEvW~~~~g~~v~~  405 (414)
                      ++.+-.+|.|.||++++|+.+.+
T Consensus       213 l~s~~~d~~i~vwd~~~~~~~~~  235 (450)
T 2vdu_B          213 IITSDRDEHIKISHYPQCFIVDK  235 (450)
T ss_dssp             EEEEETTSCEEEEEESCTTCEEE
T ss_pred             EEEEcCCCcEEEEECCCCceeee
Confidence            57788899999999999988755

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=96.08  E-value=0.02  Score=59.59  Aligned_cols=81  Identities=21%  Similarity=0.170  Sum_probs=61.9

Q ss_pred             cccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEE
Q 015021          302 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLC  381 (414)
Q Consensus       302 ~l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~  381 (414)
                      .+..+...+.+++++|+|++++++...|.|.|+|+.++..++.++||.+.    |....-.+++           +    
T Consensus       425 ~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~----v~~~~~s~~~-----------~----  485 (694)
T 3dm0_A          425 RLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKD----VLSVAFSLDN-----------R----  485 (694)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC----EEEEEECTTS-----------S----
T ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCC----EEEEEEeCCC-----------C----
Confidence            35556677889999999999999999999999999999999999999873    3222211111           1    


Q ss_pred             EEEEcCCCCeEEEeeCCCCc
Q 015021          382 LAIHAPRKGIIEHLAGMADE  401 (414)
Q Consensus       382 LvIyaprRg~lEvW~~~~g~  401 (414)
                      +++-+..+|.|.||++....
T Consensus       486 ~l~s~s~D~~i~iwd~~~~~  505 (694)
T 3dm0_A          486 QIVSASRDRTIKLWNTLGEC  505 (694)
T ss_dssp             CEEEEETTSCEEEECTTSCE
T ss_pred             EEEEEeCCCEEEEEECCCCc
Confidence            34677889999999986543

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=96.02  E-value=0.029  Score=53.89  Aligned_cols=72  Identities=15%  Similarity=0.268  Sum_probs=55.9

Q ss_pred             ECCCCCEEEEEcCCCcEEEEEcCcceeEeeecc--cccceeeEEEEEecccccccccccCCCCCcceEEEEEEcCCCCeE
Q 015021          315 LSPSGSLAAITDSLGRILLLDTQALVVVRLWKG--YRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGII  392 (414)
Q Consensus       315 ~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKG--yRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~l  392 (414)
                      .+|++++++++...|.|.++|+.++..++.+++  +.+    .+....-.+++               -+++-+-.+|.|
T Consensus       178 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~----~v~~~~~s~~~---------------~~l~s~~~dg~i  238 (437)
T 3gre_A          178 VNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHG----AVSSICIDEEC---------------CVLILGTTRGII  238 (437)
T ss_dssp             ECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGC----CEEEEEECTTS---------------CEEEEEETTSCE
T ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCC----ceEEEEECCCC---------------CEEEEEcCCCeE
Confidence            779999999999999999999999999999998  444    34333221111               145667889999


Q ss_pred             EEeeCCCCcceee
Q 015021          393 EHLAGMADENWTT  405 (414)
Q Consensus       393 EvW~~~~g~~v~~  405 (414)
                      .||++++++.+.+
T Consensus       239 ~iwd~~~~~~~~~  251 (437)
T 3gre_A          239 DIWDIRFNVLIRS  251 (437)
T ss_dssp             EEEETTTTEEEEE
T ss_pred             EEEEcCCccEEEE
Confidence            9999999988754

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=96.02  E-value=0.021  Score=55.26  Aligned_cols=82  Identities=9%  Similarity=-0.079  Sum_probs=60.1

Q ss_pred             ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEE
Q 015021          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL  382 (414)
Q Consensus       303 l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~L  382 (414)
                      |..+...... ++++++++++++...|.|.++|+.++..++.++|+.+    .|....-.+             +.   +
T Consensus       117 l~~h~~~v~~-~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~----~V~~l~~~~-------------~~---~  175 (464)
T 3v7d_B          117 LRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDG----GVWALKYAH-------------GG---I  175 (464)
T ss_dssp             EECCSSSCEE-EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS----CEEEEEECS-------------TT---E
T ss_pred             EcCCCCCcEE-EEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCc----CEEEEEEcC-------------CC---E
Confidence            4444443322 5666788999999999999999999999999999987    333322111             11   4


Q ss_pred             EEEcCCCCeEEEeeCCCCcceee
Q 015021          383 AIHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       383 vIyaprRg~lEvW~~~~g~~v~~  405 (414)
                      ++-+..+|.|.||++++|+++.+
T Consensus       176 l~s~s~dg~i~vwd~~~~~~~~~  198 (464)
T 3v7d_B          176 LVSGSTDRTVRVWDIKKGCCTHV  198 (464)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEE
T ss_pred             EEEEeCCCCEEEEECCCCcEEEE
Confidence            56677899999999999987754

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=95.99  E-value=0.016  Score=63.64  Aligned_cols=90  Identities=12%  Similarity=0.104  Sum_probs=64.7

Q ss_pred             CccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEe-----eec-ccccceeeEEEEEecc-----cccccc
Q 015021          300 LTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVR-----LWK-GYRDASCVFMEMLVNK-----DAATSS  368 (414)
Q Consensus       300 l~~l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvr-----mwK-GyRdAq~~wi~~~~~~-----~~~~~~  368 (414)
                      +..|..+...+.+|+.||+| ++|+++..|.|.|+|+.++.++.     -|+ |+.+    ||...+=.     +++   
T Consensus       568 ~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~----~V~sv~Fs~~~~~~Dg---  639 (902)
T 2oaj_A          568 STAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSA----CVTCIEFVIMEYGDDG---  639 (902)
T ss_dssp             EEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCC----CEEEEEEEEEECTTSS---
T ss_pred             eEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhcccccc----ceEEEEEEEEecCCCC---
Confidence            34466677889999999999 99999999999999999988764     343 6655    44333211     111   


Q ss_pred             cccCCCCCcceEEEEEEcCCCCeEEEeeC---CCCcceeec
Q 015021          369 AYYAPVKSDYCLCLAIHAPRKGIIEHLAG---MADENWTTS  406 (414)
Q Consensus       369 ~~~~~~k~~~~l~LvIyaprRg~lEvW~~---~~g~~v~~~  406 (414)
                            . . . -.++-+..+|.|.+|++   ++|+++++-
T Consensus       640 ------~-~-~-~~l~sgs~D~tv~~wd~~p~~~g~~~~~~  671 (902)
T 2oaj_A          640 ------Y-S-S-ILMVCGTDMGEVITYKILPASGGKFDVQL  671 (902)
T ss_dssp             ------S-E-E-EEEEEEETTSEEEEEEEEECGGGCEEEEE
T ss_pred             ------C-c-c-eEEEEEecCCcEEEEEEecCCCCcEEEEe
Confidence                  0 0 1 14466788999999999   899877653

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=95.97  E-value=0.027  Score=54.65  Aligned_cols=38  Identities=16%  Similarity=0.085  Sum_probs=34.7

Q ss_pred             EEECCCCCEEEEEcCCCcEEEEEcCcceeEeeeccccc
Q 015021          313 LTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRD  350 (414)
Q Consensus       313 i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRd  350 (414)
                      .++++++++++++...|.|.++|+.++..++..+|+.+
T Consensus       137 ~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~  174 (435)
T 1p22_A          137 YCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTG  174 (435)
T ss_dssp             EEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSS
T ss_pred             EEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCC
Confidence            46677999999999999999999999999999999987

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=95.88  E-value=0.019  Score=53.69  Aligned_cols=82  Identities=7%  Similarity=-0.030  Sum_probs=57.6

Q ss_pred             ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcce--eEeeecccccceeeEEEEEecccccccccccCCCCCcceE
Q 015021          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALV--VVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCL  380 (414)
Q Consensus       303 l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~--vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l  380 (414)
                      +..+...+.+++.+|+|+++|++...|.|.|+|+.++.  .++.++|+.+    .|....-.++         ....   
T Consensus         9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~----~V~~v~~~~~---------~~~~---   72 (316)
T 3bg1_A            9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEG----PVWQVAWAHP---------MYGN---   72 (316)
T ss_dssp             -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSS----CEEEEEECCG---------GGSS---
T ss_pred             cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCc----cEEEEEeCCC---------CCCC---
Confidence            45667788999999999999999999999999998874  5778899987    3333221100         0001   


Q ss_pred             EEEEEcCCCCeEEEeeCCCCc
Q 015021          381 CLAIHAPRKGIIEHLAGMADE  401 (414)
Q Consensus       381 ~LvIyaprRg~lEvW~~~~g~  401 (414)
                       +++-+..+|.|.||++++|+
T Consensus        73 -~l~s~s~D~~v~iWd~~~~~   92 (316)
T 3bg1_A           73 -ILASCSYDRKVIIWREENGT   92 (316)
T ss_dssp             -CEEEEETTSCEEEECCSSSC
T ss_pred             -EEEEEECCCEEEEEECCCCc
Confidence             44567789999999999874

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=95.87  E-value=0.04  Score=52.08  Aligned_cols=79  Identities=13%  Similarity=0.113  Sum_probs=59.0

Q ss_pred             CCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcc--eeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEE
Q 015021          305 DHPRKGERLTLSPSGSLAAITDSLGRILLLDTQAL--VVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL  382 (414)
Q Consensus       305 D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~--~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~L  382 (414)
                      .+...+.+|+.+|+|+++|++...|.|.|+|+.++  ..++..+|+.+    .|....-.+++         +      +
T Consensus        59 ~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~----~v~~v~~sp~~---------~------~  119 (345)
T 3fm0_A           59 GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHEN----EVKSVAWAPSG---------N------L  119 (345)
T ss_dssp             SCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSS----CEEEEEECTTS---------S------E
T ss_pred             ccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCC----CceEEEEeCCC---------C------E
Confidence            45667889999999999999999999999999876  46788899887    33322211111         1      4


Q ss_pred             EEEcCCCCeEEEeeCCCCcc
Q 015021          383 AIHAPRKGIIEHLAGMADEN  402 (414)
Q Consensus       383 vIyaprRg~lEvW~~~~g~~  402 (414)
                      ++-+..+|.|.||+++.++.
T Consensus       120 l~s~s~D~~v~iwd~~~~~~  139 (345)
T 3fm0_A          120 LATCSRDKSVWVWEVDEEDE  139 (345)
T ss_dssp             EEEEETTSCEEEEEECTTSC
T ss_pred             EEEEECCCeEEEEECCCCCC
Confidence            45677899999999987643

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=95.87  E-value=0.077  Score=49.78  Aligned_cols=79  Identities=11%  Similarity=0.112  Sum_probs=57.7

Q ss_pred             ceeeEEEECCCCCEEEEEc---CCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEE
Q 015021          308 RKGERLTLSPSGSLAAITD---SLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAI  384 (414)
Q Consensus       308 R~~~~i~~sP~~~laa~tD---~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvI  384 (414)
                      .....++.+|+|+++++++   ..|+|.++|+.++..++..++..+..+  +..   .++         ++     +|++
T Consensus       200 ~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~--~~~---s~d---------g~-----~l~~  260 (391)
T 1l0q_A          200 AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAG--IAV---TPD---------GK-----KVYV  260 (391)
T ss_dssp             SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEE--EEE---CTT---------SS-----EEEE
T ss_pred             CCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccE--EEE---ccC---------CC-----EEEE
Confidence            4567899999998777766   789999999999999998887654211  111   111         11     4555


Q ss_pred             EcCCCCeEEEeeCCCCcceee
Q 015021          385 HAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       385 yaprRg~lEvW~~~~g~~v~~  405 (414)
                      -....|.|.+|++++|+.+.+
T Consensus       261 s~~~d~~v~v~d~~~~~~~~~  281 (391)
T 1l0q_A          261 ALSFXNTVSVIDTATNTITAT  281 (391)
T ss_dssp             EETTTTEEEEEETTTTEEEEE
T ss_pred             EcCCCCEEEEEECCCCcEEEE
Confidence            567889999999999987643

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=95.75  E-value=0.03  Score=54.23  Aligned_cols=38  Identities=11%  Similarity=0.024  Sum_probs=35.0

Q ss_pred             EECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccc
Q 015021          314 TLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA  351 (414)
Q Consensus       314 ~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdA  351 (414)
                      +++|+|+++++++..|.|.++|+.++..++.++|+.+.
T Consensus       124 ~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~  161 (445)
T 2ovr_B          124 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG  161 (445)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSC
T ss_pred             EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCC
Confidence            57788999999999999999999999999999999874

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=95.73  E-value=0.025  Score=52.84  Aligned_cols=77  Identities=12%  Similarity=-0.015  Sum_probs=56.1

Q ss_pred             CCceeeEEEECCCCCEEEEEcCCCcEEEEEcC------------------cceeEeeecccccceeeEEEEEeccccccc
Q 015021          306 HPRKGERLTLSPSGSLAAITDSLGRILLLDTQ------------------ALVVVRLWKGYRDASCVFMEMLVNKDAATS  367 (414)
Q Consensus       306 ~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~------------------~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~  367 (414)
                      ....+.+|+.+|++++++++...|.|.++|+.                  .+..++.+ ++.+    ++....-.+++  
T Consensus       145 h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~v~~~~~sp~~--  217 (377)
T 3dwl_C          145 LRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGG----WVHAVGFSPSG--  217 (377)
T ss_dssp             CCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSS----SEEEEEECTTS--
T ss_pred             cCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCc----eEEEEEECCCC--
Confidence            55678899999999999999999999999995                  46666666 6665    33332211111  


Q ss_pred             ccccCCCCCcceEEEEEEcCCCCeEEEeeCCCCcc
Q 015021          368 SAYYAPVKSDYCLCLAIHAPRKGIIEHLAGMADEN  402 (414)
Q Consensus       368 ~~~~~~~k~~~~l~LvIyaprRg~lEvW~~~~g~~  402 (414)
                             +      +++.+..+|.|.||+++++++
T Consensus       218 -------~------~l~~~~~d~~i~iwd~~~~~~  239 (377)
T 3dwl_C          218 -------N------ALAYAGHDSSVTIAYPSAPEQ  239 (377)
T ss_dssp             -------S------CEEEEETTTEEC-CEECSTTS
T ss_pred             -------C------EEEEEeCCCcEEEEECCCCCC
Confidence                   1      445677899999999999987

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=95.70  E-value=0.061  Score=50.50  Aligned_cols=78  Identities=10%  Similarity=0.013  Sum_probs=55.7

Q ss_pred             eeeEEEECCCCCEE-EEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEEEcC
Q 015021          309 KGERLTLSPSGSLA-AITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP  387 (414)
Q Consensus       309 ~~~~i~~sP~~~la-a~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap  387 (414)
                      ....++++|+|+++ ++....|.|.++|+.++.+++..++..  .+.-+...   ++         +   .  +|++-..
T Consensus        33 ~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~--~v~~~~~s---pd---------g---~--~l~~~~~   93 (391)
T 1l0q_A           33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS--SPQGVAVS---PD---------G---K--QVYVTNM   93 (391)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS--SEEEEEEC---TT---------S---S--EEEEEET
T ss_pred             CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC--CccceEEC---CC---------C---C--EEEEEEC
Confidence            46889999999866 455578999999999999999887655  22222211   11         1   1  4555566


Q ss_pred             CCCeEEEeeCCCCcceee
Q 015021          388 RKGIIEHLAGMADENWTT  405 (414)
Q Consensus       388 rRg~lEvW~~~~g~~v~~  405 (414)
                      ..|.|.+|++.+|+.+.+
T Consensus        94 ~~~~v~v~d~~~~~~~~~  111 (391)
T 1l0q_A           94 ASSTLSVIDTTSNTVAGT  111 (391)
T ss_dssp             TTTEEEEEETTTTEEEEE
T ss_pred             CCCEEEEEECCCCeEEEE
Confidence            779999999999887643

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=95.63  E-value=0.07  Score=48.48  Aligned_cols=85  Identities=13%  Similarity=0.154  Sum_probs=62.5

Q ss_pred             ccccCCCceeeEEEECCC-CCEEEEEcCCCcEEEEEcCcc-----eeEeeecccccceeeEEEEEecccccccccccCCC
Q 015021          301 TCLKDHPRKGERLTLSPS-GSLAAITDSLGRILLLDTQAL-----VVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPV  374 (414)
Q Consensus       301 ~~l~D~~R~~~~i~~sP~-~~laa~tD~lGRV~L~D~~~~-----~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~  374 (414)
                      ..|.-+...+.+|+.+|+ ++++|++..+|.|.|+|+.++     ..++.++|+.+    +|....-.+++         
T Consensus        32 ~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~----~V~~~~~s~dg---------   98 (340)
T 4aow_A           32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSH----FVSDVVISSDG---------   98 (340)
T ss_dssp             EEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSS----CEEEEEECTTS---------
T ss_pred             EEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCC----CEEEEEECCCC---------
Confidence            357778889999999998 589999989999999998764     46788899887    44433222111         


Q ss_pred             CCcceEEEEEEcCCCCeEEEeeCCCCccee
Q 015021          375 KSDYCLCLAIHAPRKGIIEHLAGMADENWT  404 (414)
Q Consensus       375 k~~~~l~LvIyaprRg~lEvW~~~~g~~v~  404 (414)
                      +      +++-+..+|.|.+|+...+....
T Consensus        99 ~------~l~s~~~d~~i~~~~~~~~~~~~  122 (340)
T 4aow_A           99 Q------FALSGSWDGTLRLWDLTTGTTTR  122 (340)
T ss_dssp             S------EEEEEETTSEEEEEETTTTEEEE
T ss_pred             C------EEEEEcccccceEEeecccceee
Confidence            1      34556778888888888776653

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=95.50  E-value=0.037  Score=52.79  Aligned_cols=78  Identities=14%  Similarity=0.037  Sum_probs=56.6

Q ss_pred             eeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEe-----eecccccceeeEEEEEecccccccccccCCCCCcceEEEE
Q 015021          309 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVR-----LWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLA  383 (414)
Q Consensus       309 ~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvr-----mwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~Lv  383 (414)
                      ....++.+|+++++++....|.|.++|+.++..++     .++|+..    ++....-.+.+               .++
T Consensus       124 ~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~----~v~~~~~~~~~---------------~~~  184 (433)
T 3bws_A          124 QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLG----FVETISIPEHN---------------ELW  184 (433)
T ss_dssp             CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCC----EEEEEEEGGGT---------------EEE
T ss_pred             CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCC----ceeEEEEcCCC---------------EEE
Confidence            34578999988888888888999999999999998     5556654    34332221111               245


Q ss_pred             EEcCCCCeEEEeeCCCCcceee
Q 015021          384 IHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       384 IyaprRg~lEvW~~~~g~~v~~  405 (414)
                      +-...+|.|.+|++++++.+.+
T Consensus       185 ~s~~~d~~v~~~d~~~~~~~~~  206 (433)
T 3bws_A          185 VSQMQANAVHVFDLKTLAYKAT  206 (433)
T ss_dssp             EEEGGGTEEEEEETTTCCEEEE
T ss_pred             EEECCCCEEEEEECCCceEEEE
Confidence            5667789999999999887743

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=95.45  E-value=0.064  Score=51.09  Aligned_cols=84  Identities=6%  Similarity=0.028  Sum_probs=50.4

Q ss_pred             CccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcce
Q 015021          300 LTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYC  379 (414)
Q Consensus       300 l~~l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~  379 (414)
                      +..+..+...+.+++.+|+|+++|++...| +.++|+.++..+...... .  ...+.....             . .  
T Consensus        12 ~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~-~--~~~~~~~~~-------------~-~--   71 (355)
T 3vu4_A           12 IVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR-H--LSKVRMLHR-------------T-N--   71 (355)
T ss_dssp             -------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS-C--CCEEEECTT-------------S-S--
T ss_pred             ccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC-C--eEEEEEcCC-------------C-C--
Confidence            334566778899999999999888876666 679999888766543211 1  112221100             0 1  


Q ss_pred             EEEEEEcCCCCeEEEeeCCCCccee
Q 015021          380 LCLAIHAPRKGIIEHLAGMADENWT  404 (414)
Q Consensus       380 l~LvIyaprRg~lEvW~~~~g~~v~  404 (414)
                       ++++-.-.++.|.||++++|+.+.
T Consensus        72 -~~~~~~~~d~~v~iWd~~~~~~~~   95 (355)
T 3vu4_A           72 -YVAFVTGVKEVVHIWDDVKKQDVS   95 (355)
T ss_dssp             -EEEEECSSTTEEEEEETTTTEEEE
T ss_pred             -EEEEEECCccEEEEEECCCCcEEE
Confidence             355556667788888888887764

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=95.43  E-value=0.04  Score=60.43  Aligned_cols=35  Identities=9%  Similarity=0.161  Sum_probs=31.3

Q ss_pred             CCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcc
Q 015021          305 DHPRKGERLTLSPSGSLAAITDSLGRILLLDTQAL  339 (414)
Q Consensus       305 D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~  339 (414)
                      .+...+.+|+.||+|+++|++...|.|.|+|+.++
T Consensus       486 ~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~  520 (902)
T 2oaj_A          486 AKELAVDKISFAAETLELAVSIETGDVVLFKYEVN  520 (902)
T ss_dssp             SSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEEC
T ss_pred             CCCCceeEEEecCCCCeEEEEecCcEEEEEEecCc
Confidence            34456899999999999999999999999999877

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=95.35  E-value=0.049  Score=51.10  Aligned_cols=82  Identities=12%  Similarity=0.074  Sum_probs=60.2

Q ss_pred             cccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcc--eeEeeecccccceeeEEEEEecccccccccccCCCCCcce
Q 015021          302 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQAL--VVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYC  379 (414)
Q Consensus       302 ~l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~--~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~  379 (414)
                      .+..+...+.+|+.+|+++++|++...|.|.|+|+.++  ..++.++|+.+    ++....-.+..           .. 
T Consensus       148 ~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~----~v~~~~~~~~~-----------~~-  211 (330)
T 2hes_X          148 VLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEG----TVWSSDFDKTE-----------GV-  211 (330)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS----CEEEEEECCSS-----------SS-
T ss_pred             EeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCC----cEEEEEecCCC-----------Ce-
Confidence            35555667889999999999999999999999999876  67889999987    44332211110           00 


Q ss_pred             EEEEEEcCCCCeEEEeeCCCC
Q 015021          380 LCLAIHAPRKGIIEHLAGMAD  400 (414)
Q Consensus       380 l~LvIyaprRg~lEvW~~~~g  400 (414)
                       .+++-+..+|.|.||+++.+
T Consensus       212 -~~l~s~s~D~~v~iw~~~~~  231 (330)
T 2hes_X          212 -FRLCSGSDDSTVRVWKYMGD  231 (330)
T ss_dssp             -CEEEEEETTSCEEEEEEEEE
T ss_pred             -eEEEEEeCCCeEEEEEecCC
Confidence             24556778999999998765

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=95.27  E-value=0.067  Score=50.24  Aligned_cols=83  Identities=12%  Similarity=-0.103  Sum_probs=58.2

Q ss_pred             cCCCceeeEEEECCC-CCEEEEEcCCCcEEEEEcCcceeEeeecccc-----cceeeEEEEEecccccccccccCCCCCc
Q 015021          304 KDHPRKGERLTLSPS-GSLAAITDSLGRILLLDTQALVVVRLWKGYR-----DASCVFMEMLVNKDAATSSAYYAPVKSD  377 (414)
Q Consensus       304 ~D~~R~~~~i~~sP~-~~laa~tD~lGRV~L~D~~~~~vvrmwKGyR-----dAq~~wi~~~~~~~~~~~~~~~~~~k~~  377 (414)
                      ......+.+++.+|+ +++++++...|.|.++|+.++..++..+...     ...+.-+...   +.+           .
T Consensus       162 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~-----------~  227 (416)
T 2pm9_A          162 MSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWH---PKN-----------S  227 (416)
T ss_dssp             CCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEEC---SSC-----------T
T ss_pred             cCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEEC---CCC-----------C
Confidence            444566789999999 6899999999999999999999999988764     2222222221   100           1


Q ss_pred             ceEEEEEEcCCCC---eEEEeeCCCCcce
Q 015021          378 YCLCLAIHAPRKG---IIEHLAGMADENW  403 (414)
Q Consensus       378 ~~l~LvIyaprRg---~lEvW~~~~g~~v  403 (414)
                         .+++.+-.+|   .|.+|+++++++.
T Consensus       228 ---~~l~~~~~d~~~~~i~~~d~~~~~~~  253 (416)
T 2pm9_A          228 ---TRVATATGSDNDPSILIWDLRNANTP  253 (416)
T ss_dssp             ---TEEEEEECCSSSCCCCEEETTSTTSC
T ss_pred             ---CEEEEEECCCCCceEEEEeCCCCCCC
Confidence               1344555666   9999999997543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=95.14  E-value=0.091  Score=47.92  Aligned_cols=76  Identities=11%  Similarity=-0.100  Sum_probs=52.9

Q ss_pred             ceeeEEEECC-CCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEEEc
Q 015021          308 RKGERLTLSP-SGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA  386 (414)
Q Consensus       308 R~~~~i~~sP-~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIya  386 (414)
                      .....++++| +|++++++  .|+|.++|+.++.+++.++.-...  ..+...   ++         +  .   +|++ +
T Consensus       255 ~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~--~~~~~s---~d---------g--~---~l~~-~  312 (349)
T 1jmx_B          255 ELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTY--YCVAFD---KK---------G--D---KLYL-G  312 (349)
T ss_dssp             SCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCC--CEEEEC---SS---------S--S---CEEE-E
T ss_pred             CcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCc--cceEEC---CC---------C--C---EEEE-e
Confidence            4567899999 99988888  789999999999998887532211  111111   00         1  1   2444 5


Q ss_pred             CCCCeEEEeeCCCCcceee
Q 015021          387 PRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       387 prRg~lEvW~~~~g~~v~~  405 (414)
                      -..|.|.||++++++.+.+
T Consensus       313 ~~~~~v~v~d~~~~~~~~~  331 (349)
T 1jmx_B          313 GTFNDLAVFNPDTLEKVKN  331 (349)
T ss_dssp             SBSSEEEEEETTTTEEEEE
T ss_pred             cCCCeEEEEeccccceeee
Confidence            6679999999999988743

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=95.01  E-value=0.11  Score=49.48  Aligned_cols=84  Identities=7%  Similarity=-0.116  Sum_probs=61.2

Q ss_pred             ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEE
Q 015021          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL  382 (414)
Q Consensus       303 l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~L  382 (414)
                      +.........++.+|+|+++++....|+|.++|+.++..++.+++.... ...+...   ++         +   .  .|
T Consensus       165 ~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~-~~~~~~~---~~---------~---~--~l  226 (433)
T 3bws_A          165 YKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKW-SKILLYD---PI---------R---D--LV  226 (433)
T ss_dssp             HHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSS-EEEEEEE---TT---------T---T--EE
T ss_pred             ccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCC-eeEEEEc---CC---------C---C--EE
Confidence            4455567788999999999999989999999999999999998865542 2222221   11         1   1  34


Q ss_pred             EEEcCCCCeEEEeeCCCCccee
Q 015021          383 AIHAPRKGIIEHLAGMADENWT  404 (414)
Q Consensus       383 vIyaprRg~lEvW~~~~g~~v~  404 (414)
                      ++-...+|.|.+|++++|+.+.
T Consensus       227 ~~~~~~~~~i~~~d~~~~~~~~  248 (433)
T 3bws_A          227 YCSNWISEDISVIDRKTKLEIR  248 (433)
T ss_dssp             EEEETTTTEEEEEETTTTEEEE
T ss_pred             EEEecCCCcEEEEECCCCcEEE
Confidence            4455578999999999988764

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=94.89  E-value=0.16  Score=46.46  Aligned_cols=81  Identities=15%  Similarity=0.084  Sum_probs=53.1

Q ss_pred             eeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEEEcCCC
Q 015021          310 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRK  389 (414)
Q Consensus       310 ~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprR  389 (414)
                      ...++++|+|+++++++..|+|.++|+.++.+++.++.-.+..-.+.....-.++         +   .  +|++-....
T Consensus       187 ~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~d---------g---~--~l~~~~~~~  252 (353)
T 3vgz_A          187 STGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTA---------R---Q--RAFITDSKA  252 (353)
T ss_dssp             CCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETT---------T---T--EEEEEESSS
T ss_pred             cceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCC---------C---C--EEEEEeCCC
Confidence            3457899999999999999999999999999998876522211111111110010         1   1  244444556


Q ss_pred             CeEEEeeCCCCccee
Q 015021          390 GIIEHLAGMADENWT  404 (414)
Q Consensus       390 g~lEvW~~~~g~~v~  404 (414)
                      +.|-+|++++|+.+.
T Consensus       253 ~~v~~~d~~~~~~~~  267 (353)
T 3vgz_A          253 AEVLVVDTRNGNILA  267 (353)
T ss_dssp             SEEEEEETTTCCEEE
T ss_pred             CEEEEEECCCCcEEE
Confidence            899999999888764

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=94.82  E-value=0.16  Score=45.82  Aligned_cols=75  Identities=7%  Similarity=-0.129  Sum_probs=51.3

Q ss_pred             ceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEEEcC
Q 015021          308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP  387 (414)
Q Consensus       308 R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap  387 (414)
                      .....++++|+|++++++|  |+|.++|+.++..++.++.-..  ..-+...   ++         +   .  +|++ +-
T Consensus       241 ~~~~~~~~s~dg~~l~~~~--~~v~~~d~~~~~~~~~~~~~~~--~~~~~~s---~d---------g---~--~l~~-~~  298 (337)
T 1pby_B          241 VFYFSTAVNPAKTRAFGAY--NVLESFDLEKNASIKRVPLPHS--YYSVNVS---TD---------G---S--TVWL-GG  298 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEE--SEEEEEETTTTEEEEEEECSSC--CCEEEEC---TT---------S---C--EEEE-ES
T ss_pred             CceeeEEECCCCCEEEEeC--CeEEEEECCCCcCcceecCCCc--eeeEEEC---CC---------C---C--EEEE-Ec
Confidence            4556799999999888884  9999999999998887753211  1111111   10         1   1  2333 35


Q ss_pred             CCCeEEEeeCCCCccee
Q 015021          388 RKGIIEHLAGMADENWT  404 (414)
Q Consensus       388 rRg~lEvW~~~~g~~v~  404 (414)
                      ..|.|.||++.+|+.+.
T Consensus       299 ~~~~i~v~d~~~~~~~~  315 (337)
T 1pby_B          299 ALGDLAAYDAETLEKKG  315 (337)
T ss_dssp             BSSEEEEEETTTCCEEE
T ss_pred             CCCcEEEEECcCCcEEE
Confidence            68999999999998774

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=94.67  E-value=0.21  Score=45.63  Aligned_cols=76  Identities=16%  Similarity=0.109  Sum_probs=53.3

Q ss_pred             eeeEEEECCCCCEEEEEcC-CCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEEEcC
Q 015021          309 KGERLTLSPSGSLAAITDS-LGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP  387 (414)
Q Consensus       309 ~~~~i~~sP~~~laa~tD~-lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap  387 (414)
                      ....++++|+|+++.+++. .|+|.++|+.++.+++..+.-....+.|-      ++         ++     +|.+-..
T Consensus       232 ~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s------~d---------g~-----~l~v~~~  291 (353)
T 3vgz_A          232 FFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLAVLFN------PA---------RN-----EAYVTHR  291 (353)
T ss_dssp             CEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCEEEE------TT---------TT-----EEEEEET
T ss_pred             ccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCceEEEC------CC---------CC-----EEEEEEC
Confidence            3567999999987666655 49999999999999888765332222221      00         11     3455566


Q ss_pred             CCCeEEEeeCCCCccee
Q 015021          388 RKGIIEHLAGMADENWT  404 (414)
Q Consensus       388 rRg~lEvW~~~~g~~v~  404 (414)
                      ..|.|.+|++.+|+.+.
T Consensus       292 ~~~~v~~~d~~~~~~~~  308 (353)
T 3vgz_A          292 QAGKVSVIDAKSYKVVK  308 (353)
T ss_dssp             TTTEEEEEETTTTEEEE
T ss_pred             CCCeEEEEECCCCeEEE
Confidence            68999999999988764

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=94.08  E-value=0.28  Score=47.04  Aligned_cols=92  Identities=9%  Similarity=0.005  Sum_probs=59.3

Q ss_pred             eeeeccCcceeeeeecc---eEEEEeecCCCCC-ceeecccCCCCCCCeEEEEEeEEeCCcEEEEEeccccEEEEEe-cC
Q 015021           34 NLLCALDMHTIALANRY---QTVIINWADPEGL-VAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYD-LK  108 (414)
Q Consensus        34 ~~~~sp~~~~la~A~~~---~~v~~~w~~~~~~-~v~~~g~l~~~~~e~ITs~~~lpl~dw~~I~VG~ssG~vrfyt-e~  108 (414)
                      .++.+|++..++.+-..   .+.+..|+..... ...-...+.. ....|+++.+=  ||-..||+|..+|.|++|+ ++
T Consensus       224 ~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~V~~~~~S--pdg~~lasgs~D~~V~iwd~~~  300 (365)
T 4h5i_A          224 KINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTN-RFKGITSMDVD--MKGELAVLASNDNSIALVKLKD  300 (365)
T ss_dssp             EEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEES-SCSCEEEEEEC--TTSCEEEEEETTSCEEEEETTT
T ss_pred             EEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecC-CCCCeEeEEEC--CCCCceEEEcCCCEEEEEECCC
Confidence            35667888887776433   3344445433211 1111112222 23557776553  6888999999999999999 58


Q ss_pred             CcEEee-cccCccceeEEEEe
Q 015021          109 GDLVHR-QLIHPGRILKLRVR  128 (414)
Q Consensus       109 G~LL~s-Q~lh~~pV~~ik~r  128 (414)
                      |.++.. ..-|..+|..|.+-
T Consensus       301 ~~~~~~~~~gH~~~V~~v~fS  321 (365)
T 4h5i_A          301 LSMSKIFKQAHSFAITEVTIS  321 (365)
T ss_dssp             TEEEEEETTSSSSCEEEEEEC
T ss_pred             CcEEEEecCcccCCEEEEEEC
Confidence            888876 45799999999973

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=94.03  E-value=0.31  Score=47.40  Aligned_cols=81  Identities=10%  Similarity=-0.004  Sum_probs=56.7

Q ss_pred             ccCCCceeeEEEECC-CCCEEEEEcCCCcEEEEEcCcc---eeEeeecccccceeeEEEEEecccccccccccCCCCCcc
Q 015021          303 LKDHPRKGERLTLSP-SGSLAAITDSLGRILLLDTQAL---VVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDY  378 (414)
Q Consensus       303 l~D~~R~~~~i~~sP-~~~laa~tD~lGRV~L~D~~~~---~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~  378 (414)
                      +......+..|+.+| ++.++|++...|.|.++|+.++   ..+...+++..    -+....-.+.           .. 
T Consensus       227 ~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~----~v~~i~~~p~-----------~~-  290 (430)
T 2xyi_A          227 FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTA----EVNCLSFNPY-----------SE-  290 (430)
T ss_dssp             ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSS----CEEEEEECSS-----------CT-
T ss_pred             ecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCC----CeEEEEeCCC-----------CC-
Confidence            444556789999999 5689999999999999999987   56666776654    2222211110           01 


Q ss_pred             eEEEEEEcCCCCeEEEeeCCCCc
Q 015021          379 CLCLAIHAPRKGIIEHLAGMADE  401 (414)
Q Consensus       379 ~l~LvIyaprRg~lEvW~~~~g~  401 (414)
                        ++++-+-.+|.|.||+++++.
T Consensus       291 --~~l~tg~~dg~v~vwd~~~~~  311 (430)
T 2xyi_A          291 --FILATGSADKTVALWDLRNLK  311 (430)
T ss_dssp             --TEEEEEETTSEEEEEETTCTT
T ss_pred             --CEEEEEeCCCeEEEEeCCCCC
Confidence              245556779999999999844

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=93.93  E-value=0.27  Score=47.79  Aligned_cols=85  Identities=15%  Similarity=0.113  Sum_probs=58.9

Q ss_pred             CCccccCCCceeeEEEECCCCC-EEEEEcCCCcEEEEEcCccee-------EeeecccccceeeEEEEEecccccccccc
Q 015021          299 PLTCLKDHPRKGERLTLSPSGS-LAAITDSLGRILLLDTQALVV-------VRLWKGYRDASCVFMEMLVNKDAATSSAY  370 (414)
Q Consensus       299 pl~~l~D~~R~~~~i~~sP~~~-laa~tD~lGRV~L~D~~~~~v-------vrmwKGyRdAq~~wi~~~~~~~~~~~~~~  370 (414)
                      ++..+..+...+..|+.+|+++ ++++++..|.|.++|+.++..       .+.++++...    +....-.+       
T Consensus       173 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~----v~~v~~~p-------  241 (430)
T 2xyi_A          173 PDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAV----VEDVAWHL-------  241 (430)
T ss_dssp             CSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSC----EEEEEECS-------
T ss_pred             CcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCC----EeeeEEeC-------
Confidence            4455677777899999999998 999999999999999998322       4566666542    22111111       


Q ss_pred             cCCCCCcceEEEEEEcCCCCeEEEeeCCCCc
Q 015021          371 YAPVKSDYCLCLAIHAPRKGIIEHLAGMADE  401 (414)
Q Consensus       371 ~~~~k~~~~l~LvIyaprRg~lEvW~~~~g~  401 (414)
                         ..  .  .+++-+-.+|.|.||++++++
T Consensus       242 ---~~--~--~~l~s~~~dg~i~i~d~~~~~  265 (430)
T 2xyi_A          242 ---LH--E--SLFGSVADDQKLMIWDTRNNN  265 (430)
T ss_dssp             ---SC--T--TEEEEEETTSEEEEEETTCSC
T ss_pred             ---CC--C--CEEEEEeCCCeEEEEECCCCC
Confidence               00  1  144556678999999999873

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=93.82  E-value=0.14  Score=49.45  Aligned_cols=85  Identities=7%  Similarity=-0.079  Sum_probs=59.8

Q ss_pred             cccCCCceeeEEEECC--------CCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCC
Q 015021          302 CLKDHPRKGERLTLSP--------SGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAP  373 (414)
Q Consensus       302 ~l~D~~R~~~~i~~sP--------~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~  373 (414)
                      .+.-+...+.+|+.+|        +++++|.+-.++.|.|+|+.++..+...+++++.    +....-.+.+        
T Consensus       131 ~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~----v~~v~~~p~~--------  198 (393)
T 4gq1_A          131 GKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSP----GISVQFRPSN--------  198 (393)
T ss_dssp             TTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSC----EEEEEEETTE--------
T ss_pred             ccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCC----cEEEEECCCC--------
Confidence            3555667789999998        7899999988999999999887776666666663    2211110100        


Q ss_pred             CCCcceEEEEEEcCCCCeEEEeeCCCCccee
Q 015021          374 VKSDYCLCLAIHAPRKGIIEHLAGMADENWT  404 (414)
Q Consensus       374 ~k~~~~l~LvIyaprRg~lEvW~~~~g~~v~  404 (414)
                          .  .+++-+..+|.|.+|++++++...
T Consensus       199 ----~--~~l~~~~~d~~v~~wd~~t~~~~~  223 (393)
T 4gq1_A          199 ----P--NQLIVGERNGNIRIFDWTLNLSAE  223 (393)
T ss_dssp             ----E--EEEEEEETTSEEEEEETTCCC---
T ss_pred             ----C--ceEEecCCCCEEEEEECCCCcccc
Confidence                1  356778899999999999987653

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=93.73  E-value=0.33  Score=49.96  Aligned_cols=80  Identities=18%  Similarity=-0.038  Sum_probs=53.6

Q ss_pred             eeEEEECCCCCEEEEEcCCCcEEEEEc--CcceeEeeecccccceeeEEEEEeccc-ccccccccCCCCCcceEEEEEEc
Q 015021          310 GERLTLSPSGSLAAITDSLGRILLLDT--QALVVVRLWKGYRDASCVFMEMLVNKD-AATSSAYYAPVKSDYCLCLAIHA  386 (414)
Q Consensus       310 ~~~i~~sP~~~laa~tD~lGRV~L~D~--~~~~vvrmwKGyRdAq~~wi~~~~~~~-~~~~~~~~~~~k~~~~l~LvIya  386 (414)
                      ...+.+||+|+++++++..|.|.+||+  .++.+++..+.-.+.  .-+.+..... +         +   .  +|++-.
T Consensus       181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p--~~va~sp~~~~d---------g---~--~l~v~~  244 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEA--RSVESSKFKGYE---------D---R--YTIAGA  244 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEE--EEEEECCSTTCT---------T---T--EEEEEE
T ss_pred             cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCc--ceEEeCCCcCCC---------C---C--EEEEEE
Confidence            567889999999999888899999999  899988877754331  1111110000 1         1   1  233333


Q ss_pred             CCCCeEEEeeCCCCcceee
Q 015021          387 PRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       387 prRg~lEvW~~~~g~~v~~  405 (414)
                      -..+.|.||+.++++.+.+
T Consensus       245 ~~~~~v~v~D~~t~~~~~~  263 (543)
T 1nir_A          245 YWPPQFAIMDGETLEPKQI  263 (543)
T ss_dssp             EESSEEEEEETTTCCEEEE
T ss_pred             ccCCeEEEEecccccccee
Confidence            3468899999999987754

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=93.62  E-value=0.17  Score=53.97  Aligned_cols=78  Identities=12%  Similarity=0.071  Sum_probs=59.8

Q ss_pred             ceeeEEEECCCCCEEEEEcCCCcEEEEEcCcce-------eEeeecccccceeeEEEEEecccccccccccCCCCCcceE
Q 015021          308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALV-------VVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCL  380 (414)
Q Consensus       308 R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~-------vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l  380 (414)
                      +...+++.||+|++.|++...|.|-|+|+.++.       .++.++++...+-.||....-.+             + . 
T Consensus       130 ~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-------------d-g-  194 (588)
T 2j04_A          130 RTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE-------------D-V-  194 (588)
T ss_dssp             TCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-------------T-E-
T ss_pred             ccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC-------------C-c-
Confidence            457799999999999999999999999999995       58888655544445887664321             1 1 


Q ss_pred             EEEEEcCCCCeEEEeeCCCCcc
Q 015021          381 CLAIHAPRKGIIEHLAGMADEN  402 (414)
Q Consensus       381 ~LvIyaprRg~lEvW~~~~g~~  402 (414)
                        ++-+..++.+.+|+++.++.
T Consensus       195 --Laass~D~tVrlWd~~~~~~  214 (588)
T 2j04_A          195 --LVAALSNNSVFSMTVSASSH  214 (588)
T ss_dssp             --EEEEETTCCEEEECCCSSSS
T ss_pred             --EEEEeCCCeEEEEECCCCcc
Confidence              24456699999999988774

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=93.49  E-value=0.35  Score=44.07  Aligned_cols=80  Identities=10%  Similarity=-0.016  Sum_probs=49.0

Q ss_pred             CceeeEEEECCCCCEEEEE-cCCCcEEEEEcCccee-EeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEE
Q 015021          307 PRKGERLTLSPSGSLAAIT-DSLGRILLLDTQALVV-VRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAI  384 (414)
Q Consensus       307 ~R~~~~i~~sP~~~laa~t-D~lGRV~L~D~~~~~v-vrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvI  384 (414)
                      .+.. .++++|+|+++.++ ...++|.++|+.++.+ ++...+......+ +...   +          .  ..  +|+.
T Consensus        40 ~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~s---~----------d--g~--~l~~  100 (331)
T 3u4y_A           40 YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMAD-VDIT---P----------D--DQ--FAVT  100 (331)
T ss_dssp             CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCC-EEEC---T----------T--SS--EEEE
T ss_pred             CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccc-eEEC---C----------C--CC--EEEE
Confidence            3445 89999999855555 4589999999999987 6666544332110 1110   0          0  11  2332


Q ss_pred             EcCCCC--eEEEeeCCCCcceee
Q 015021          385 HAPRKG--IIEHLAGMADENWTT  405 (414)
Q Consensus       385 yaprRg--~lEvW~~~~g~~v~~  405 (414)
                      .....+  .|.+|++.+|+.+.+
T Consensus       101 ~~~~~~~~~i~v~d~~~~~~~~~  123 (331)
T 3u4y_A          101 VTGLNHPFNMQSYSFLKNKFIST  123 (331)
T ss_dssp             CCCSSSSCEEEEEETTTTEEEEE
T ss_pred             ecCCCCcccEEEEECCCCCeEEE
Confidence            222223  999999999987653

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=92.97  E-value=0.3  Score=48.60  Aligned_cols=79  Identities=19%  Similarity=0.105  Sum_probs=54.6

Q ss_pred             ccCCCceeeEEEECCC-CCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEE
Q 015021          303 LKDHPRKGERLTLSPS-GSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLC  381 (414)
Q Consensus       303 l~D~~R~~~~i~~sP~-~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~  381 (414)
                      +..+...+..|+.+|+ ++++|++...|.|.++|+.++..+...+|+++    .+....=.+++         +     +
T Consensus       145 ~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~----~v~~v~wspdg---------~-----~  206 (434)
T 2oit_A          145 LKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTV----AVTSVCWSPKG---------K-----Q  206 (434)
T ss_dssp             CCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGG----CEEEEEECTTS---------S-----C
T ss_pred             cCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCC----ceeEEEEcCCC---------C-----E
Confidence            3445567889999998 78999999999999999999977766677655    22221111111         1     2


Q ss_pred             EEEEcCCCCeEEEeeCCCCc
Q 015021          382 LAIHAPRKGIIEHLAGMADE  401 (414)
Q Consensus       382 LvIyaprRg~lEvW~~~~g~  401 (414)
                      |+ -+-.+|.|.+|+++ |+
T Consensus       207 la-sgs~dg~v~iwd~~-~~  224 (434)
T 2oit_A          207 LA-VGKQNGTVVQYLPT-LQ  224 (434)
T ss_dssp             EE-EEETTSCEEEECTT-CC
T ss_pred             EE-EEcCCCcEEEEccC-Cc
Confidence            33 34578999999998 44

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=92.94  E-value=0.25  Score=50.89  Aligned_cols=84  Identities=8%  Similarity=-0.094  Sum_probs=59.7

Q ss_pred             cccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcc-eeEeeecccccceeeEEEEEe--cccccccccccCCCCCcc
Q 015021          302 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQAL-VVVRLWKGYRDASCVFMEMLV--NKDAATSSAYYAPVKSDY  378 (414)
Q Consensus       302 ~l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~-~vvrmwKGyRdAq~~wi~~~~--~~~~~~~~~~~~~~k~~~  378 (414)
                      .|.-....+.+++.+|++ .+|++...|.|.|+|+.++ ..+..++|+.+    .|....  ..+.         +  . 
T Consensus       261 ~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~----~V~sv~~~~s~~---------g--~-  323 (524)
T 2j04_B          261 TLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDS----YILSVSTAYSDF---------E--D-  323 (524)
T ss_dssp             EECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSS----CEEEEEEECCTT---------S--C-
T ss_pred             EEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccc----cEEEEEEEcCCC---------C--C-
Confidence            455555678889999875 6777788899999999987 45566888876    444321  1110         0  0 


Q ss_pred             eEEEEEEcCCCCeEEEeeCCCCccee
Q 015021          379 CLCLAIHAPRKGIIEHLAGMADENWT  404 (414)
Q Consensus       379 ~l~LvIyaprRg~lEvW~~~~g~~v~  404 (414)
                        .+++-+..+|.|.||++++++++.
T Consensus       324 --~~laS~S~D~tvklWD~~~~~~~~  347 (524)
T 2j04_B          324 --TVVSTVAVDGYFYIFNPKDIATTK  347 (524)
T ss_dssp             --CEEEEEETTSEEEEECGGGHHHHC
T ss_pred             --eEEEEeccCCeEEEEECCCCCccc
Confidence              266788999999999999887654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=92.79  E-value=0.33  Score=44.16  Aligned_cols=75  Identities=11%  Similarity=-0.092  Sum_probs=51.1

Q ss_pred             EEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEEEcCCCCeE
Q 015021          313 LTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGII  392 (414)
Q Consensus       313 i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~l  392 (414)
                      +++++++++.++....|.|.++|+.++.+++.++.-..-...-+.+.   ++         +   .  ++++-....+.|
T Consensus         5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s---~d---------g---~--~~~v~~~~~~~i   67 (349)
T 1jmx_B            5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMA---PD---------N---R--TAYVLNNHYGDI   67 (349)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEEC---TT---------S---S--EEEEEETTTTEE
T ss_pred             ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEEC---CC---------C---C--EEEEEeCCCCcE
Confidence            45788888888888889999999999999988875431011111111   10         1   1  344555678999


Q ss_pred             EEeeCCCCccee
Q 015021          393 EHLAGMADENWT  404 (414)
Q Consensus       393 EvW~~~~g~~v~  404 (414)
                      .+|++.+|+.+.
T Consensus        68 ~~~d~~t~~~~~   79 (349)
T 1jmx_B           68 YGIDLDTCKNTF   79 (349)
T ss_dssp             EEEETTTTEEEE
T ss_pred             EEEeCCCCcEEE
Confidence            999999988763

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=92.74  E-value=0.39  Score=43.27  Aligned_cols=38  Identities=26%  Similarity=0.323  Sum_probs=31.6

Q ss_pred             eeEEEECCCCCEEEEEc------------CCCcEEEEEcCcceeEeeecc
Q 015021          310 GERLTLSPSGSLAAITD------------SLGRILLLDTQALVVVRLWKG  347 (414)
Q Consensus       310 ~~~i~~sP~~~laa~tD------------~lGRV~L~D~~~~~vvrmwKG  347 (414)
                      ...++++|+|+++++++            ..++|.++|+.++.+++..+.
T Consensus        84 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~  133 (337)
T 1pby_B           84 LFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA  133 (337)
T ss_dssp             TTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC
T ss_pred             ccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC
Confidence            34688999998888875            569999999999999887764

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=92.73  E-value=0.13  Score=51.20  Aligned_cols=79  Identities=13%  Similarity=-0.000  Sum_probs=54.9

Q ss_pred             CceeeEEEECCCCCEEE----EEcCCCcEEEEEcCcc-----------eeEeeecccccceeeEEEEEeccccccccccc
Q 015021          307 PRKGERLTLSPSGSLAA----ITDSLGRILLLDTQAL-----------VVVRLWKGYRDASCVFMEMLVNKDAATSSAYY  371 (414)
Q Consensus       307 ~R~~~~i~~sP~~~laa----~tD~lGRV~L~D~~~~-----------~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~  371 (414)
                      +..+.+++.+|+|+++|    .....|.|.++|+.++           ..++.++|+.+.    +....-.+        
T Consensus        92 ~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~----V~~v~~~p--------  159 (434)
T 2oit_A           92 KFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGM----VIDMKWNP--------  159 (434)
T ss_dssp             SSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGS----EEEEEECS--------
T ss_pred             CCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCc----eEEEEECC--------
Confidence            45688999999998888    4577899999999876           126778887662    22211111        


Q ss_pred             CCCCCcceEEEEEEcCCCCeEEEeeCCCCcce
Q 015021          372 APVKSDYCLCLAIHAPRKGIIEHLAGMADENW  403 (414)
Q Consensus       372 ~~~k~~~~l~LvIyaprRg~lEvW~~~~g~~v  403 (414)
                        ..  .  .+++-+..+|.|.||++++++++
T Consensus       160 --~~--~--~~las~s~Dg~v~iwD~~~~~~~  185 (434)
T 2oit_A          160 --TV--P--SMVAVCLADGSIAVLQVTETVKV  185 (434)
T ss_dssp             --SC--T--TEEEEEETTSCEEEEEESSSEEE
T ss_pred             --CC--C--CEEEEEECCCeEEEEEcCCCcce
Confidence              00  1  14455677999999999998665

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=92.64  E-value=0.29  Score=45.46  Aligned_cols=83  Identities=10%  Similarity=0.046  Sum_probs=57.2

Q ss_pred             cccCCCceeeEEEECCC--CCEEEEEcCCCcEEEEEcCcc--eeEeeecccccceeeEEEEEecccccccccccCCCCCc
Q 015021          302 CLKDHPRKGERLTLSPS--GSLAAITDSLGRILLLDTQAL--VVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSD  377 (414)
Q Consensus       302 ~l~D~~R~~~~i~~sP~--~~laa~tD~lGRV~L~D~~~~--~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~  377 (414)
                      .|..+...+..|+.+|.  ++++|++...|.|.++|+.++  ..++..+|+.+.    +....-.+          .. .
T Consensus        52 ~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~----V~~v~~~p----------~~-~  116 (316)
T 3bg1_A           52 DLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSS----VNSVCWAP----------HD-Y  116 (316)
T ss_dssp             EEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSC----CCEEEECC----------TT-T
T ss_pred             EEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCc----eEEEEECC----------CC-C
Confidence            35566677888999864  788888889999999999987  356677887762    22111111          00 0


Q ss_pred             ceEEEEEEcCCCCeEEEeeCCCCc
Q 015021          378 YCLCLAIHAPRKGIIEHLAGMADE  401 (414)
Q Consensus       378 ~~l~LvIyaprRg~lEvW~~~~g~  401 (414)
                      .  .+++-+-.+|.|.+|+++.+.
T Consensus       117 g--~~lasgs~D~~i~lwd~~~~~  138 (316)
T 3bg1_A          117 G--LILACGSSDGAISLLTYTGEG  138 (316)
T ss_dssp             C--SCEEEECSSSCEEEEEECSSS
T ss_pred             C--cEEEEEcCCCCEEEEecCCCC
Confidence            0  144667789999999998864

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=92.56  E-value=0.33  Score=48.75  Aligned_cols=95  Identities=7%  Similarity=-0.089  Sum_probs=54.6

Q ss_pred             CCceeeEEEECCC----CCEEEEEcCCCcEEEEEcCcceeEee-ecccccceeeEEEEEeccccccc----ccccCCCCC
Q 015021          306 HPRKGERLTLSPS----GSLAAITDSLGRILLLDTQALVVVRL-WKGYRDASCVFMEMLVNKDAATS----SAYYAPVKS  376 (414)
Q Consensus       306 ~~R~~~~i~~sP~----~~laa~tD~lGRV~L~D~~~~~vvrm-wKGyRdAq~~wi~~~~~~~~~~~----~~~~~~~k~  376 (414)
                      +.|.+.+|+.||+    +++.+.+...  +-++++.+|..+.- ..||-.    +|++..-.+++..    ..+......
T Consensus       110 ~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~g~d~----~V~~~~~s~dG~~~~s~~~~~~~v~~  183 (356)
T 2w18_A          110 EIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGTLSDQ----QVEVMTFAEDGGGKENQFLMPPEETI  183 (356)
T ss_dssp             SEEEEEEECC------CCEEEEEEEEE--EEEEEETTTEEEEEESSSTTC----EEEEEEECTTSCEEEEEEECCCSSCE
T ss_pred             cccceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEEEecccCCCC----cEEEEEECCCCceeeeeccCCCceee
Confidence            3578889999999    8877775444  44567777887776 466655    5555443222200    000000000


Q ss_pred             -cce-----EEEEEEcCCCCeEEEeeCCCCcceeec
Q 015021          377 -DYC-----LCLAIHAPRKGIIEHLAGMADENWTTS  406 (414)
Q Consensus       377 -~~~-----l~LvIyaprRg~lEvW~~~~g~~v~~~  406 (414)
                       .++     .=+++-+..++.|.||++++|+++.|-
T Consensus       184 l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL  219 (356)
T 2w18_A          184 LTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKM  219 (356)
T ss_dssp             EEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             EEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEE
Confidence             000     014567788999999999999988663

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=91.74  E-value=0.15  Score=51.47  Aligned_cols=84  Identities=19%  Similarity=0.091  Sum_probs=54.6

Q ss_pred             ccCCCceeeEEEECCCCCEEEEEcCCC--cEEEEEcCcceeEeeecccccc--eee-EEEEEecccccccccccCCCCCc
Q 015021          303 LKDHPRKGERLTLSPSGSLAAITDSLG--RILLLDTQALVVVRLWKGYRDA--SCV-FMEMLVNKDAATSSAYYAPVKSD  377 (414)
Q Consensus       303 l~D~~R~~~~i~~sP~~~laa~tD~lG--RV~L~D~~~~~vvrmwKGyRdA--q~~-wi~~~~~~~~~~~~~~~~~~k~~  377 (414)
                      |.+.......++.||||+++|.+|..|  +|.++|+.++... +..++...  .+. +-...   .      .-.|   +
T Consensus       190 l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~---~------~~sp---d  256 (582)
T 3o4h_A          190 FDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITW---L------GYLP---D  256 (582)
T ss_dssp             ECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEE---E------EECT---T
T ss_pred             eecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccc---e------eEcC---C
Confidence            444455668899999999888889889  9999999999887 77665331  011 00000   0      0001   1


Q ss_pred             ceEEEEEEcCCCCeEEEeeCCCCcce
Q 015021          378 YCLCLAIHAPRKGIIEHLAGMADENW  403 (414)
Q Consensus       378 ~~l~LvIyaprRg~lEvW~~~~g~~v  403 (414)
                      .  .+++.+-++|.+.+|.+  |+.+
T Consensus       257 g--~~~~~~~~~g~~~l~~~--g~~~  278 (582)
T 3o4h_A          257 G--RLAVVARREGRSAVFID--GERV  278 (582)
T ss_dssp             S--CEEEEEEETTEEEEEET--TEEE
T ss_pred             C--cEEEEEEcCCcEEEEEE--CCee
Confidence            1  25566677899999998  6655

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=91.23  E-value=0.55  Score=40.92  Aligned_cols=46  Identities=17%  Similarity=0.203  Sum_probs=37.9

Q ss_pred             ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCc-ceeEeeecccc
Q 015021          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQA-LVVVRLWKGYR  349 (414)
Q Consensus       303 l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~-~~vvrmwKGyR  349 (414)
                      +.........++.+|+|++++++. .|.|.++|+.+ +...++.++..
T Consensus        37 ~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~   83 (297)
T 2ojh_A           37 VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFA   83 (297)
T ss_dssp             EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTC
T ss_pred             eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccc
Confidence            334456788999999999888765 68999999999 99999888774

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=91.04  E-value=0.52  Score=51.76  Aligned_cols=46  Identities=9%  Similarity=0.083  Sum_probs=39.6

Q ss_pred             CCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeeccccc
Q 015021          305 DHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRD  350 (414)
Q Consensus       305 D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRd  350 (414)
                      ........++.||+|+++|.+...++|.++|+.++.+.++.+++..
T Consensus       376 ~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~  421 (1045)
T 1k32_A          376 ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREA  421 (1045)
T ss_dssp             CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSS
T ss_pred             CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCC
Confidence            3445678899999999999998999999999999999999877654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=91.01  E-value=0.55  Score=47.14  Aligned_cols=68  Identities=16%  Similarity=0.022  Sum_probs=47.9

Q ss_pred             EEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEEEcCCCCe
Q 015021          312 RLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGI  391 (414)
Q Consensus       312 ~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~  391 (414)
                      .+..+.++.++|+....|.|-|+|+.+|..++..+|+.+.-+.-+...   ++         ++      +++-+-.+|.
T Consensus       288 ~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafS---PD---------G~------~LaSGS~D~T  349 (356)
T 2w18_A          288 FLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWS---GT---------DS------HLLAGQKDGN  349 (356)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEEC---SS---------SS------EEEEECTTSC
T ss_pred             eEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEEC---CC---------CC------EEEEEECCCc
Confidence            344555577899988889999999999999999999987432222111   11         11      4567889999


Q ss_pred             EEEeeC
Q 015021          392 IEHLAG  397 (414)
Q Consensus       392 lEvW~~  397 (414)
                      |.||++
T Consensus       350 IklWd~  355 (356)
T 2w18_A          350 IFVYHY  355 (356)
T ss_dssp             EEEEEE
T ss_pred             EEEecC
Confidence            999985

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=90.98  E-value=0.66  Score=41.86  Aligned_cols=33  Identities=12%  Similarity=0.048  Sum_probs=25.3

Q ss_pred             ceeeEEEECCCCCEEEEEcCC-CcEEEEEcC--cce
Q 015021          308 RKGERLTLSPSGSLAAITDSL-GRILLLDTQ--ALV  340 (414)
Q Consensus       308 R~~~~i~~sP~~~laa~tD~l-GRV~L~D~~--~~~  340 (414)
                      .....++++|+|+++++++.. |+|.++|+.  ++.
T Consensus        38 ~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~   73 (343)
T 1ri6_A           38 GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA   73 (343)
T ss_dssp             SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred             CCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCc
Confidence            345669999999977776555 999999987  554

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=90.86  E-value=0.56  Score=45.14  Aligned_cols=100  Identities=13%  Similarity=0.061  Sum_probs=53.3

Q ss_pred             ccCCCceeeEEEECCCC-CEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccc---cccccCCC----
Q 015021          303 LKDHPRKGERLTLSPSG-SLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAAT---SSAYYAPV----  374 (414)
Q Consensus       303 l~D~~R~~~~i~~sP~~-~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~---~~~~~~~~----  374 (414)
                      +......+.+++.+|++ +++++++..|.|.|+|+.++....--.+..+....|...........   ...+....    
T Consensus       182 ~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~  261 (393)
T 4gq1_A          182 GYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVR  261 (393)
T ss_dssp             EEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEE
T ss_pred             ecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeee
Confidence            33445567889999998 58899999999999999999988877777777666766554322110   00000000    


Q ss_pred             --CCcceEEEEEEcCCCCeEEEeeCCCCccee
Q 015021          375 --KSDYCLCLAIHAPRKGIIEHLAGMADENWT  404 (414)
Q Consensus       375 --k~~~~l~LvIyaprRg~lEvW~~~~g~~v~  404 (414)
                        ..+..  .++-+..++.+.||+++.++...
T Consensus       262 ~~~~dg~--~l~s~s~d~~i~vwd~~~~~~~~  291 (393)
T 4gq1_A          262 WIGSDGS--GILAMCKSGAWLRWNLFANNDYN  291 (393)
T ss_dssp             EETTTTC--EEEEECTTSEEEEEEC-------
T ss_pred             eecCCCC--EEEEEeCCCCEEEEECccCCCCc
Confidence              00111  34556788999999999887653

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=90.59  E-value=1.1  Score=40.85  Aligned_cols=74  Identities=11%  Similarity=-0.022  Sum_probs=47.5

Q ss_pred             eeEEEECCCCCEEEEE-cCCCcEEEEEcCccee---EeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEEE
Q 015021          310 GERLTLSPSGSLAAIT-DSLGRILLLDTQALVV---VRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIH  385 (414)
Q Consensus       310 ~~~i~~sP~~~laa~t-D~lGRV~L~D~~~~~v---vrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIy  385 (414)
                      ...++++|+|+++.++ ...++|.++|+.++.+   ++.+.+-..  ..-+.+.   ++         +   .  +|++-
T Consensus       178 ~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~--~~~~~~s---pd---------g---~--~l~v~  238 (331)
T 3u4y_A          178 PFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNL--PGTIVVS---RD---------G---S--TVYVL  238 (331)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSC--CCCEEEC---TT---------S---S--EEEEE
T ss_pred             ccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCC--CceEEEC---CC---------C---C--EEEEE
Confidence            4788999999865554 5678999999999988   655543211  1111110   00         1   1  34444


Q ss_pred             cCCCCeEEEeeCCCCcc
Q 015021          386 APRKGIIEHLAGMADEN  402 (414)
Q Consensus       386 aprRg~lEvW~~~~g~~  402 (414)
                      ....+.|.+|++++|+.
T Consensus       239 ~~~~~~i~~~d~~~~~~  255 (331)
T 3u4y_A          239 TESTVDVFNFNQLSGTL  255 (331)
T ss_dssp             CSSEEEEEEEETTTTEE
T ss_pred             EcCCCEEEEEECCCCce
Confidence            45678899999998877

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=90.33  E-value=1.7  Score=39.12  Aligned_cols=31  Identities=16%  Similarity=0.288  Sum_probs=25.3

Q ss_pred             CceeeEEEECCCCCEEEEEc-CCCcEEEEEcC
Q 015021          307 PRKGERLTLSPSGSLAAITD-SLGRILLLDTQ  337 (414)
Q Consensus       307 ~R~~~~i~~sP~~~laa~tD-~lGRV~L~D~~  337 (414)
                      .+....|+.+|+|+++++++ ..|+|.++|+.
T Consensus       230 ~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~  261 (343)
T 1ri6_A          230 TRWAADIHITPDGRHLYACDRTASLITVFSVS  261 (343)
T ss_dssp             CCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             cCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence            35567899999998776654 78999999998

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=90.29  E-value=0.78  Score=48.96  Aligned_cols=75  Identities=8%  Similarity=0.100  Sum_probs=48.9

Q ss_pred             CceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeeccccc----ceeeEEEEEecccccccccccCCCCCcceEEE
Q 015021          307 PRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRD----ASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL  382 (414)
Q Consensus       307 ~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRd----Aq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~L  382 (414)
                      ...+..++-||+|+++|++++.|.|.|+|..+  .+...+ +-.    .++.=+..   .++         ++     +|
T Consensus        85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svaf---SPD---------G~-----~L  144 (588)
T 2j04_A           85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEW---NPI---------ES-----SI  144 (588)
T ss_dssp             SCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEE---CSS---------SS-----CE
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEE---cCC---------CC-----EE
Confidence            35688999999999999999999999999665  333333 111    01111111   111         11     23


Q ss_pred             EEEcCCCCeEEEeeCCCCcc
Q 015021          383 AIHAPRKGIIEHLAGMADEN  402 (414)
Q Consensus       383 vIyaprRg~lEvW~~~~g~~  402 (414)
                       .-+..+|.|+||+++.|+.
T Consensus       145 -Asgs~DGtVkIWd~~~~~l  163 (588)
T 2j04_A          145 -VVGNEDGELQFFSIRKNSE  163 (588)
T ss_dssp             -EEEETTSEEEEEECCCCTT
T ss_pred             -EEEcCCCEEEEEECCCCcc
Confidence             3467799999999999863

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=90.02  E-value=2.5  Score=39.30  Aligned_cols=77  Identities=12%  Similarity=0.068  Sum_probs=44.9

Q ss_pred             eeEEEECCCCCEEEEEcCC--CcEEEEEcC--cce--eEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEE
Q 015021          310 GERLTLSPSGSLAAITDSL--GRILLLDTQ--ALV--VVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLA  383 (414)
Q Consensus       310 ~~~i~~sP~~~laa~tD~l--GRV~L~D~~--~~~--vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~Lv  383 (414)
                      ...|++||+|+++++++..  ++|.++|+.  ++.  .+.....  .....-+.+.   ++         ++     +|+
T Consensus       261 ~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~--g~~~~~~~~s---pd---------g~-----~l~  321 (361)
T 3scy_A          261 SGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT--GIHPRNFIIT---PN---------GK-----YLL  321 (361)
T ss_dssp             EEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC--SSCCCEEEEC---TT---------SC-----EEE
T ss_pred             cccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC--CCCCceEEEC---CC---------CC-----EEE
Confidence            3689999999988777665  899999885  454  3332222  1111111110   10         11     455


Q ss_pred             EEcCCCCeEEEe--eCCCCcceee
Q 015021          384 IHAPRKGIIEHL--AGMADENWTT  405 (414)
Q Consensus       384 IyaprRg~lEvW--~~~~g~~v~~  405 (414)
                      +-....+.|.||  +..+|+...+
T Consensus       322 ~~~~~~~~v~v~~~d~~~g~~~~~  345 (361)
T 3scy_A          322 VACRDTNVIQIFERDQATGLLTDI  345 (361)
T ss_dssp             EEETTTTEEEEEEECTTTCCEEEC
T ss_pred             EEECCCCCEEEEEEECCCCcEeec
Confidence            555567899995  5557776544

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=90.02  E-value=1.6  Score=42.68  Aligned_cols=48  Identities=15%  Similarity=0.151  Sum_probs=35.8

Q ss_pred             cccCCCceeeEEEECCCCCEEEEEcCC---CcEEEEEcCcceeEeeeccccc
Q 015021          302 CLKDHPRKGERLTLSPSGSLAAITDSL---GRILLLDTQALVVVRLWKGYRD  350 (414)
Q Consensus       302 ~l~D~~R~~~~i~~sP~~~laa~tD~l---GRV~L~D~~~~~vvrmwKGyRd  350 (414)
                      .|..+......++.||+|+++|.+...   .+|.++|+.++...++ .++.+
T Consensus       173 ~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l-~~~~~  223 (415)
T 2hqs_A          173 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPR  223 (415)
T ss_dssp             EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEE-ECCSS
T ss_pred             EEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEe-ecCCC
Confidence            355556678899999999877776544   4999999999988654 44443

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=89.51  E-value=1.4  Score=42.44  Aligned_cols=71  Identities=13%  Similarity=0.029  Sum_probs=48.8

Q ss_pred             EEECCCCCEEEEEcC-----------CCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEE
Q 015021          313 LTLSPSGSLAAITDS-----------LGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLC  381 (414)
Q Consensus       313 i~~sP~~~laa~tD~-----------lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~  381 (414)
                      ++++|+++.+-++..           -++|.+||+.++.+++-+++..   ..-+.+..+            +   .  +
T Consensus       259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~---p~~ia~spd------------g---~--~  318 (361)
T 2oiz_A          259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD---ALSMTIDQQ------------R---N--L  318 (361)
T ss_dssp             EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT---CCEEEEETT------------T---T--E
T ss_pred             EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC---eeEEEECCC------------C---C--E
Confidence            678999865555422           3589999999999999998776   333332211            1   1  2


Q ss_pred             EEEEcCCCCeEEEeeCCCC--cceee
Q 015021          382 LAIHAPRKGIIEHLAGMAD--ENWTT  405 (414)
Q Consensus       382 LvIyaprRg~lEvW~~~~g--~~v~~  405 (414)
                      |+  +..++.|-||++++|  +.+.+
T Consensus       319 l~--v~n~~~v~v~D~~t~~l~~~~~  342 (361)
T 2oiz_A          319 ML--TLDGGNVNVYDISQPEPKLLRT  342 (361)
T ss_dssp             EE--EECSSCEEEEECSSSSCEEEEE
T ss_pred             EE--EeCCCeEEEEECCCCcceeeEE
Confidence            33  333499999999999  88865

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=89.50  E-value=0.42  Score=49.26  Aligned_cols=72  Identities=7%  Similarity=-0.015  Sum_probs=54.1

Q ss_pred             eeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEEEcCCC
Q 015021          310 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRK  389 (414)
Q Consensus       310 ~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprR  389 (414)
                      ..+|+.+|+++.+|+++..+.|-|+|+.++..++...|+.+    +|....-.+.+            .   +++-+..+
T Consensus       358 v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~----~V~sva~Sp~g------------~---~l~Sgs~D  418 (524)
T 2j04_B          358 LVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRET----TITAIGVSRLH------------P---MVLAGSAD  418 (524)
T ss_dssp             CCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSS----CEEEEECCSSC------------C---BCEEEETT
T ss_pred             ccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCC----ceEEEEeCCCC------------C---eEEEEECC
Confidence            46789999999999999999999999999999899999887    55544322211            1   23456778


Q ss_pred             CeEEEeeCCCC
Q 015021          390 GIIEHLAGMAD  400 (414)
Q Consensus       390 g~lEvW~~~~g  400 (414)
                      |.|.+|++..+
T Consensus       419 gtv~lwd~~~~  429 (524)
T 2j04_B          419 GSLIITNAARR  429 (524)
T ss_dssp             TEEECCBSCSS
T ss_pred             CEEEEEechHh
Confidence            88888887543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=88.93  E-value=0.7  Score=47.55  Aligned_cols=70  Identities=16%  Similarity=0.248  Sum_probs=50.0

Q ss_pred             ECCCCCEEEEEcCCCcEEEEEcCcceeEeeec-ccccceeeEEEEEecccccccccccCCCCCcceEEEEEEcCCCCeEE
Q 015021          315 LSPSGSLAAITDSLGRILLLDTQALVVVRLWK-GYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIE  393 (414)
Q Consensus       315 ~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwK-GyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lE  393 (414)
                      ++|++++.++....|.|.+||..++.+++.++ |+.   . +.-...  +++            .  +|++ +-+.|.|.
T Consensus       145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~---~-~~v~~s--pdg------------~--~l~v-~~~d~~V~  203 (543)
T 1nir_A          145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA---V-HISRMS--ASG------------R--YLLV-IGRDARID  203 (543)
T ss_dssp             CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT---E-EEEEEC--TTS------------C--EEEE-EETTSEEE
T ss_pred             cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc---c-ceEEEC--CCC------------C--EEEE-ECCCCeEE
Confidence            78999888888888999999999999999998 765   2 222121  111            1  2322 23459999


Q ss_pred             EeeC--CCCcceee
Q 015021          394 HLAG--MADENWTT  405 (414)
Q Consensus       394 vW~~--~~g~~v~~  405 (414)
                      +|++  ++++.+.+
T Consensus       204 v~D~~~~t~~~~~~  217 (543)
T 1nir_A          204 MIDLWAKEPTKVAE  217 (543)
T ss_dssp             EEETTSSSCEEEEE
T ss_pred             EEECcCCCCcEEEE
Confidence            9999  88887754

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=88.42  E-value=0.84  Score=42.57  Aligned_cols=70  Identities=16%  Similarity=0.062  Sum_probs=48.2

Q ss_pred             EEECCCCCEEEE-EcCCC--cEEEEEcCcceeEeeecccccce--eeEEEEEecccccccccccCCCCCcceEEEEEEcC
Q 015021          313 LTLSPSGSLAAI-TDSLG--RILLLDTQALVVVRLWKGYRDAS--CVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP  387 (414)
Q Consensus       313 i~~sP~~~laa~-tD~lG--RV~L~D~~~~~vvrmwKGyRdAq--~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap  387 (414)
                      .+.||+|+++|. ++..|  +|.++|+.++.+.++-.|..+..  ..|-      ++         ++      .++|+.
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~s------pd---------g~------~l~~~~   99 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLS------PD---------DD------ALFYVK   99 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEEC------TT---------SS------EEEEEE
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEc------CC---------CC------EEEEEe
Confidence            678999986665 55567  59999999999999998876643  2221      11         11      234444


Q ss_pred             CCCeEEEeeCCCCcce
Q 015021          388 RKGIIEHLAGMADENW  403 (414)
Q Consensus       388 rRg~lEvW~~~~g~~v  403 (414)
                      .++.|-+|++.+|+..
T Consensus       100 ~~~~l~~~d~~~g~~~  115 (388)
T 3pe7_A          100 DGRNLMRVDLATLEEN  115 (388)
T ss_dssp             TTTEEEEEETTTCCEE
T ss_pred             CCCeEEEEECCCCcce
Confidence            5678888888888753

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=88.34  E-value=1  Score=41.56  Aligned_cols=73  Identities=14%  Similarity=0.090  Sum_probs=43.5

Q ss_pred             ceeeEEEECCCCCEEEEEc--CCCcEEEEEcCcceeEeeec--ccccceeeEEEEEecccccccccccCCCCCcceEEEE
Q 015021          308 RKGERLTLSPSGSLAAITD--SLGRILLLDTQALVVVRLWK--GYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLA  383 (414)
Q Consensus       308 R~~~~i~~sP~~~laa~tD--~lGRV~L~D~~~~~vvrmwK--GyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~Lv  383 (414)
                      .....+++||+|+++++.+  ..|+|.++|+.++..-.+-.  +. .....++.+..+            ++     +|+
T Consensus        40 ~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~-~~~p~~~a~spd------------g~-----~l~  101 (347)
T 3hfq_A           40 QNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAP-GTPPAYVAVDEA------------RQ-----LVY  101 (347)
T ss_dssp             SCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEE-SCCCSEEEEETT------------TT-----EEE
T ss_pred             CCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecC-CCCCEEEEECCC------------CC-----EEE
Confidence            3345699999999665553  36999999998776433321  11 122233332211            11     344


Q ss_pred             EEcCCCCeEEEeeCC
Q 015021          384 IHAPRKGIIEHLAGM  398 (414)
Q Consensus       384 IyaprRg~lEvW~~~  398 (414)
                      +-....|.+.+|++.
T Consensus       102 ~~~~~~~~v~v~~~~  116 (347)
T 3hfq_A          102 SANYHKGTAEVMKIA  116 (347)
T ss_dssp             EEETTTTEEEEEEEC
T ss_pred             EEeCCCCEEEEEEeC
Confidence            445567889999985

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=87.73  E-value=3.8  Score=37.64  Aligned_cols=30  Identities=10%  Similarity=0.249  Sum_probs=24.1

Q ss_pred             ceeeEEEECCCCCEEEEE-cCCCcEEEEEcC
Q 015021          308 RKGERLTLSPSGSLAAIT-DSLGRILLLDTQ  337 (414)
Q Consensus       308 R~~~~i~~sP~~~laa~t-D~lGRV~L~D~~  337 (414)
                      .....++++|+|+++.++ ...++|.++|+.
T Consensus       240 ~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~  270 (347)
T 3hfq_A          240 NGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT  270 (347)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred             CcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence            346789999999976554 557999999997

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=87.07  E-value=2.2  Score=44.03  Aligned_cols=44  Identities=11%  Similarity=-0.033  Sum_probs=36.3

Q ss_pred             CceeeEEEECCCCCEEEEEcC-CC-----cEEEEEcCcceeEeeeccccc
Q 015021          307 PRKGERLTLSPSGSLAAITDS-LG-----RILLLDTQALVVVRLWKGYRD  350 (414)
Q Consensus       307 ~R~~~~i~~sP~~~laa~tD~-lG-----RV~L~D~~~~~vvrmwKGyRd  350 (414)
                      .+....++.||+|+++|.+.. .|     .|.++|+.++...++..+...
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~   85 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVV   85 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGT
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhc
Confidence            456788999999998877655 77     999999999999998876543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=85.68  E-value=4.5  Score=37.47  Aligned_cols=77  Identities=12%  Similarity=0.032  Sum_probs=44.7

Q ss_pred             ceeeEEEECCCCCEEEEEcCC----CcEEEEEcCc--ceeEeeeccc-ccceeeEEEEEecccccccccccCCCCCcceE
Q 015021          308 RKGERLTLSPSGSLAAITDSL----GRILLLDTQA--LVVVRLWKGY-RDASCVFMEMLVNKDAATSSAYYAPVKSDYCL  380 (414)
Q Consensus       308 R~~~~i~~sP~~~laa~tD~l----GRV~L~D~~~--~~vvrmwKGy-RdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l  380 (414)
                      .....+++||+|+++++++..    |+|.++++..  |.+-++-... -.....++..    +          ++     
T Consensus        50 ~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~----d----------g~-----  110 (361)
T 3scy_A           50 ANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT----N----------GK-----  110 (361)
T ss_dssp             SCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE----C----------SS-----
T ss_pred             CCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE----C----------CC-----
Confidence            444568999999877776553    8998877655  5554433211 1122233332    1          11     


Q ss_pred             EEEEEcCCCCeEEEeeCCCCcce
Q 015021          381 CLAIHAPRKGIIEHLAGMADENW  403 (414)
Q Consensus       381 ~LvIyaprRg~lEvW~~~~g~~v  403 (414)
                      +|++-.-..|.|.+|++.....+
T Consensus       111 ~l~~~~~~~~~v~~~~~~~~g~~  133 (361)
T 3scy_A          111 NIVTANYSGGSITVFPIGQDGAL  133 (361)
T ss_dssp             EEEEEETTTTEEEEEEBCTTSCB
T ss_pred             EEEEEECCCCEEEEEEeCCCCcC
Confidence            34455556789999998754433

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=84.89  E-value=3  Score=40.63  Aligned_cols=44  Identities=16%  Similarity=0.090  Sum_probs=33.7

Q ss_pred             CCCceeeEEEECCCCCEEEEEcC---CCcEEEEEcCcceeEeeeccc
Q 015021          305 DHPRKGERLTLSPSGSLAAITDS---LGRILLLDTQALVVVRLWKGY  348 (414)
Q Consensus       305 D~~R~~~~i~~sP~~~laa~tD~---lGRV~L~D~~~~~vvrmwKGy  348 (414)
                      ........++.||+|++++.+..   .++|.++|+.++.+.++..+.
T Consensus       308 ~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~  354 (415)
T 2hqs_A          308 WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF  354 (415)
T ss_dssp             CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS
T ss_pred             cCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCC
Confidence            34456778999999987777533   368999999999987766554

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=84.77  E-value=5.7  Score=37.41  Aligned_cols=37  Identities=8%  Similarity=-0.007  Sum_probs=29.8

Q ss_pred             CceeeEEEECCCCCEEEEEcC-CCcEEEEEcC-cceeEe
Q 015021          307 PRKGERLTLSPSGSLAAITDS-LGRILLLDTQ-ALVVVR  343 (414)
Q Consensus       307 ~R~~~~i~~sP~~~laa~tD~-lGRV~L~D~~-~~~vvr  343 (414)
                      ......+++||+|++++++|. .++|.++|+. +|.+..
T Consensus       144 ~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~  182 (365)
T 1jof_A          144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVEL  182 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEE
T ss_pred             CCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEE
Confidence            356778999999998888875 5899999998 776543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=84.06  E-value=3  Score=42.71  Aligned_cols=40  Identities=20%  Similarity=0.071  Sum_probs=31.3

Q ss_pred             ceeeEEEECCCCCEEEEEc---------------------------------CCCcEEEEEcCcceeEeeecc
Q 015021          308 RKGERLTLSPSGSLAAITD---------------------------------SLGRILLLDTQALVVVRLWKG  347 (414)
Q Consensus       308 R~~~~i~~sP~~~laa~tD---------------------------------~lGRV~L~D~~~~~vvrmwKG  347 (414)
                      .....+..||+|+++|.+.                                 ..++|.++|+.++...++..+
T Consensus       181 ~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~  253 (706)
T 2z3z_A          181 GIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTG  253 (706)
T ss_dssp             TCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCC
T ss_pred             CCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccC
Confidence            3456788999998777753                                 457899999999998877644

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=83.59  E-value=6.9  Score=36.41  Aligned_cols=82  Identities=13%  Similarity=0.118  Sum_probs=49.7

Q ss_pred             eeeEEEECC-CCCEEEEEc-CCCcEEEEEcCcceeEeeecccc------cceeeEEEEEecccccccccccCCCCCcceE
Q 015021          309 KGERLTLSP-SGSLAAITD-SLGRILLLDTQALVVVRLWKGYR------DASCVFMEMLVNKDAATSSAYYAPVKSDYCL  380 (414)
Q Consensus       309 ~~~~i~~sP-~~~laa~tD-~lGRV~L~D~~~~~vvrmwKGyR------dAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l  380 (414)
                      .-..|+++| +|++.++-- ..+||.++| ..|..++.+.+.-      .+++.+..-..-.++            ..  
T Consensus       144 ~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~------------~g--  208 (329)
T 3fvz_A          144 QPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPH------------LD--  208 (329)
T ss_dssp             SEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETT------------TT--
T ss_pred             CCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECC------------CC--
Confidence            356799999 566554432 489999999 6788888775332      233333322211111            01  


Q ss_pred             EEEEEcCCCCeEEEeeCCCCcceee
Q 015021          381 CLAIHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       381 ~LvIyaprRg~lEvW~~~~g~~v~~  405 (414)
                      .|.+=....+.|.+|+..+|+.+.+
T Consensus       209 ~l~v~d~~~~~I~~~~~~~G~~~~~  233 (329)
T 3fvz_A          209 QLCVADRENGRIQCFKTDTKEFVRE  233 (329)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEE
T ss_pred             EEEEEECCCCEEEEEECCCCcEEEE
Confidence            2445556678888999887877644

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=83.15  E-value=2.3  Score=42.76  Aligned_cols=73  Identities=7%  Similarity=-0.135  Sum_probs=47.6

Q ss_pred             eEEEECCCCCEEEEEcCC----CcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEEEc
Q 015021          311 ERLTLSPSGSLAAITDSL----GRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA  386 (414)
Q Consensus       311 ~~i~~sP~~~laa~tD~l----GRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIya  386 (414)
                      .++..||||+++|.+.+.    +.|.++|+.++...++ .+..+    ++..+.=.+++         +     .|+ .+
T Consensus       153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l-~~~~~----~~~~~~~SpDG---------~-----~l~-~~  212 (582)
T 3o4h_A          153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVF-DSGEG----SFSSASISPGM---------K-----VTA-GL  212 (582)
T ss_dssp             CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEE-CCSSC----EEEEEEECTTS---------C-----EEE-EE
T ss_pred             ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEe-ecCCC----ccccceECCCC---------C-----EEE-Ec
Confidence            688999999887754322    6799999999987765 44433    22222111211         1     344 55


Q ss_pred             CCCC--eEEEeeCCCCcce
Q 015021          387 PRKG--IIEHLAGMADENW  403 (414)
Q Consensus       387 prRg--~lEvW~~~~g~~v  403 (414)
                      -+.|  .|.+|++.+|+..
T Consensus       213 ~~~~~~~i~~~d~~~~~~~  231 (582)
T 3o4h_A          213 ETAREARLVTVDPRDGSVE  231 (582)
T ss_dssp             ECSSCEEEEEECTTTCCEE
T ss_pred             cCCCeeEEEEEcCCCCcEE
Confidence            5677  8999999988765

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=82.83  E-value=2.5  Score=43.36  Aligned_cols=71  Identities=20%  Similarity=0.103  Sum_probs=46.6

Q ss_pred             eeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeeccc-ccceeeEEEEEecccccccccccCCCCCcceEEEEEEcC
Q 015021          309 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGY-RDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP  387 (414)
Q Consensus       309 ~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGy-RdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap  387 (414)
                      ...++++||++++++++|  |.|.++|+.++...++-.+- +...+.|-      ++         +  +   .| +|. 
T Consensus        83 ~v~~~~~spd~~~~~~~~--~~i~~~d~~~~~~~~l~~~~~~~~~~~~S------pd---------G--~---~l-a~~-  138 (706)
T 2z3z_A           83 PSFRTLDAGRGLVVLFTQ--GGLVGFDMLARKVTYLFDTNEETASLDFS------PV---------G--D---RV-AYV-  138 (706)
T ss_dssp             CCEEEEETTTTEEEEEET--TEEEEEETTTTEEEEEECCTTCCTTCEEC------TT---------S--S---EE-EEE-
T ss_pred             CceeEEECCCCeEEEEEC--CEEEEEECCCCceEEccCCcccccCCcCC------CC---------C--C---EE-EEE-
Confidence            467899999966666666  99999999999887765431 11112221      11         1  1   22 233 


Q ss_pred             CCCeEEEeeCCC-----Ccce
Q 015021          388 RKGIIEHLAGMA-----DENW  403 (414)
Q Consensus       388 rRg~lEvW~~~~-----g~~v  403 (414)
                      +++.|-+|++.+     |+..
T Consensus       139 ~~~~i~v~~~~~~~~~~g~~~  159 (706)
T 2z3z_A          139 RNHNLYIARGGKLGEGMSRAI  159 (706)
T ss_dssp             ETTEEEEEECBCTTSCCCCCE
T ss_pred             ECCeEEEEecCcccccCCCcE
Confidence            679999999998     7654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=82.80  E-value=0.76  Score=47.19  Aligned_cols=40  Identities=10%  Similarity=0.083  Sum_probs=34.4

Q ss_pred             eeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeeccccc
Q 015021          310 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRD  350 (414)
Q Consensus       310 ~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRd  350 (414)
                      ..+++.+|+|++++. +..|.|.++|+.++...++..+...
T Consensus        19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~   58 (723)
T 1xfd_A           19 DPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKI   58 (723)
T ss_dssp             CCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTT
T ss_pred             ccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccc
Confidence            566788999998765 7889999999999999999988764

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=81.40  E-value=9.7  Score=35.37  Aligned_cols=39  Identities=13%  Similarity=0.170  Sum_probs=31.4

Q ss_pred             ceeeEEEECCCCCEEEEEcCC------------------------CcEEEEEcCcceeEeeec
Q 015021          308 RKGERLTLSPSGSLAAITDSL------------------------GRILLLDTQALVVVRLWK  346 (414)
Q Consensus       308 R~~~~i~~sP~~~laa~tD~l------------------------GRV~L~D~~~~~vvrmwK  346 (414)
                      .....|+++|+|++.++....                        |+|+++|..+|.+++.|.
T Consensus        24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~   86 (329)
T 3fvz_A           24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG   86 (329)
T ss_dssp             SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC
T ss_pred             CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC
Confidence            457889999999988664333                        479999999999988775

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=81.18  E-value=6  Score=34.20  Aligned_cols=40  Identities=28%  Similarity=0.268  Sum_probs=29.6

Q ss_pred             ceeeEEEECCCCCEEEEEc----CCCcEEEEEcCcceeEeeecc
Q 015021          308 RKGERLTLSPSGSLAAITD----SLGRILLLDTQALVVVRLWKG  347 (414)
Q Consensus       308 R~~~~i~~sP~~~laa~tD----~lGRV~L~D~~~~~vvrmwKG  347 (414)
                      .....++.+|+|++++++.    ...+|..+|+.++...++-.+
T Consensus        85 ~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  128 (297)
T 2ojh_A           85 ICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKN  128 (297)
T ss_dssp             CBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSS
T ss_pred             ccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecC
Confidence            3456789999998777765    368999999988876555443

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=81.15  E-value=3.7  Score=37.95  Aligned_cols=72  Identities=13%  Similarity=0.013  Sum_probs=45.4

Q ss_pred             eeEEEECCCCCEEEEE-cC--CCcEEEEEcCcceeEeeecccccce--eeEEEEEecccccccccccCCCCCcceEEEEE
Q 015021          310 GERLTLSPSGSLAAIT-DS--LGRILLLDTQALVVVRLWKGYRDAS--CVFMEMLVNKDAATSSAYYAPVKSDYCLCLAI  384 (414)
Q Consensus       310 ~~~i~~sP~~~laa~t-D~--lGRV~L~D~~~~~vvrmwKGyRdAq--~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvI  384 (414)
                      ...+++||+|+++|.+ +.  ..+|.++|+.++...++-.+.....  +.|-      ++         +  +    .++
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~s------pd---------g--~----~l~   96 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFIS------TD---------E--R----AFF   96 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEEC------TT---------S--S----EEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceEC------CC---------C--C----EEE
Confidence            3457899999876654 43  3479999999999877765543211  2221      00         1  1    234


Q ss_pred             EcCCCCeEEEeeCCCCcc
Q 015021          385 HAPRKGIIEHLAGMADEN  402 (414)
Q Consensus       385 yaprRg~lEvW~~~~g~~  402 (414)
                      |.-.++.|-+|++..|+.
T Consensus        97 ~~~~~~~l~~~d~~~~~~  114 (396)
T 3c5m_A           97 YVKNELNLMKVDLETLEE  114 (396)
T ss_dssp             EEETTTEEEEEETTTCCE
T ss_pred             EEEcCCcEEEEECCCCCc
Confidence            555566788898888763

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=81.01  E-value=1.8  Score=44.58  Aligned_cols=32  Identities=13%  Similarity=0.160  Sum_probs=27.6

Q ss_pred             eeEEEECCCCCEEEEEcC---------CCcEEEEEcCccee
Q 015021          310 GERLTLSPSGSLAAITDS---------LGRILLLDTQALVV  341 (414)
Q Consensus       310 ~~~i~~sP~~~laa~tD~---------lGRV~L~D~~~~~v  341 (414)
                      ..+++.||||+++|.+.+         .|.|.++|+.++..
T Consensus        62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~  102 (719)
T 1z68_A           62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEF  102 (719)
T ss_dssp             CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE
T ss_pred             eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcc
Confidence            678999999998777543         68999999999988

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=80.87  E-value=5.1  Score=41.22  Aligned_cols=43  Identities=14%  Similarity=0.149  Sum_probs=34.0

Q ss_pred             CCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccc
Q 015021          306 HPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYR  349 (414)
Q Consensus       306 ~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyR  349 (414)
                      .......++.||+|+++|.+.. +.|.++|+.++...++-.+..
T Consensus       150 ~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~  192 (741)
T 2ecf_A          150 GEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGS  192 (741)
T ss_dssp             SSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCCCC
T ss_pred             CCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCc
Confidence            3455788999999987666542 599999999999998876543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=80.79  E-value=8.2  Score=40.23  Aligned_cols=81  Identities=17%  Similarity=-0.004  Sum_probs=50.5

Q ss_pred             eeEEEECCCCCEEEEEcCCCcEEEEEcC--cceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEEEcC
Q 015021          310 GERLTLSPSGSLAAITDSLGRILLLDTQ--ALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP  387 (414)
Q Consensus       310 ~~~i~~sP~~~laa~tD~lGRV~L~D~~--~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap  387 (414)
                      ...+.+||+|+++.+++..|.|.+||+.  ++.+++-.+.-.+..  =+.+  ..      .   +....+.+|..=|. 
T Consensus       199 p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~--~ia~--s~------~---~~pDGk~l~v~n~~-  264 (567)
T 1qks_A          199 VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR--SIET--SK------M---EGWEDKYAIAGAYW-  264 (567)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE--EEEE--CC------S---TTCTTTEEEEEEEE-
T ss_pred             ccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCc--eeEE--cc------c---cCCCCCEEEEEEcc-
Confidence            4579999999998888889999999996  887776554322210  0111  00      0   00001233444444 


Q ss_pred             CCCeEEEeeCCCCcceee
Q 015021          388 RKGIIEHLAGMADENWTT  405 (414)
Q Consensus       388 rRg~lEvW~~~~g~~v~~  405 (414)
                       .+.|-|++..+++.+.+
T Consensus       265 -~~~v~ViD~~t~~~~~~  281 (567)
T 1qks_A          265 -PPQYVIMDGETLEPKKI  281 (567)
T ss_dssp             -TTEEEEEETTTCCEEEE
T ss_pred             -CCeEEEEECCCCcEEEE
Confidence             48888999988887754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	414
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	98.66
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	98.57
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	98.54
d1tbga_	340	beta1-subunit of the signal-transducing G protein	97.97
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	97.9
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	97.88
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	97.79
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	97.76
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	97.55
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	97.54
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	97.45
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	97.4
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	97.37
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	97.14
d1tbga_	340	beta1-subunit of the signal-transducing G protein	96.99
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	96.9
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	96.66
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	96.6
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	96.58
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	96.47
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	96.31
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	96.29
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	96.28
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	96.24
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	96.1
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	95.64
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	95.51
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	95.48
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	95.29
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	95.08
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	95.04
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	94.93
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	94.93
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	93.29
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	92.39
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	92.08
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	91.96
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	91.53
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	91.51
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	91.47
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	91.19
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	91.08
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	90.9
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	90.69
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	87.62
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	84.99
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	80.94

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.66  E-value=6.4e-06  Score=75.41  Aligned_cols=246  Identities=13%  Similarity=0.065  Sum_probs=139.5

Q ss_pred             CeeeeccCcceeeeeecceEEEEeecCCCCCceeecccCCCCCCCeEEEEEeEEeCCcEEEEEeccccEEEEEe-cCCcE
Q 015021           33 PNLLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYD-LKGDL  111 (414)
Q Consensus        33 ~~~~~sp~~~~la~A~~~~~v~~~w~~~~~~~v~~~g~l~~~~~e~ITs~~~lpl~dw~~I~VG~ssG~vrfyt-e~G~L  111 (414)
                      ..++.+|+|+.||.+.+..+++-...... ..-.+.|     -.+.||++.|-  ||...+|+|..+|.|++|+ .++..
T Consensus        21 ~~~a~~~~g~~l~~~~~~~v~i~~~~~~~-~~~~~~~-----H~~~v~~~~~s--p~g~~latg~~dg~i~iwd~~~~~~   92 (311)
T d1nr0a1          21 VVLGNTPAGDKIQYCNGTSVYTVPVGSLT-DTEIYTE-----HSHQTTVAKTS--PSGYYCASGDVHGNVRIWDTTQTTH   92 (311)
T ss_dssp             CCCEECTTSSEEEEEETTEEEEEETTCSS-CCEEECC-----CSSCEEEEEEC--TTSSEEEEEETTSEEEEEESSSTTC
T ss_pred             EEEEEcCCCCEEEEEeCCEEEEEECCCCc-eeEEEcC-----CCCCEEEEEEe--CCCCeEeccccCceEeeeeeecccc
Confidence            57899999999999988876653322211 1112222     13669998885  4777899999999999998 45555


Q ss_pred             Eeec--ccCccceeEEEEecccCCCCCCCCCCeEEEEeCCe--EEEEeChhHHHHHHHHHHhccccccCCCCccCCCccc
Q 015021          112 VHRQ--LIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGV--LARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDL  187 (414)
Q Consensus       112 L~sQ--~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ily~~~--iv~IdG~sL~~~Lr~c~~~~~~~~w~~~~~~~~~~~~  187 (414)
                      ++..  ..|..+|..+.+...         ...|.+...+.  .+.|                    |+-...+.     
T Consensus        93 ~~~~~~~~~~~~v~~v~~s~d---------~~~l~~~~~~~~~~~~v--------------------~~~~~~~~-----  138 (311)
T d1nr0a1          93 ILKTTIPVFSGPVKDISWDSE---------SKRIAAVGEGRERFGHV--------------------FLFDTGTS-----  138 (311)
T ss_dssp             CEEEEEECSSSCEEEEEECTT---------SCEEEEEECCSSCSEEE--------------------EETTTCCB-----
T ss_pred             ccccccccccCcccccccccc---------ccccccccccccccccc--------------------cccccccc-----
Confidence            5443  457889988875321         22233332211  1111                    10000000     


Q ss_pred             ccccCCccceecccC-CCCCceeeEEeCCCCCCchhhhccccceeEEEeCCCceeEEEEeccCCCcchhhhhhhhhhHHH
Q 015021          188 ENSYERLPHQLWNVS-KYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVGAILSKVVPAT  266 (414)
Q Consensus       188 ~~~~~~L~ykKW~l~-~~~~i~Daa~~G~~~p~~~d~~s~~~~~~~i~vG~~P~la~y~~~~~~~~s~~~al~S~va~av  266 (414)
                                +..+. ..+.+.++++.    |        .+.+.+++.+.+-.+-+|-..+..                
T Consensus       139 ----------~~~l~~h~~~v~~v~~~----~--------~~~~~l~sgs~d~~i~i~d~~~~~----------------  180 (311)
T d1nr0a1         139 ----------NGNLTGQARAMNSVDFK----P--------SRPFRIISGSDDNTVAIFEGPPFK----------------  180 (311)
T ss_dssp             ----------CBCCCCCSSCEEEEEEC----S--------SSSCEEEEEETTSCEEEEETTTBE----------------
T ss_pred             ----------ccccccccccccccccc----c--------cceeeecccccccccccccccccc----------------
Confidence                      01111 12234444431    1        122223444444444333221110                


Q ss_pred             HHHhhhhhhhhhcCCCCCCCCCCCCcccccCCCCccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeec
Q 015021          267 FSTISSLSKMIWRSEQSPKKSEPKPQSFARASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWK  346 (414)
Q Consensus       267 ~S~v~S~ak~~W~~~~~~~~~e~kp~~~~~a~pl~~l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwK  346 (414)
                                                      +...+.+....+.++..+|++++++++...|.|.|+|+.++..++.++
T Consensus       181 --------------------------------~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~  228 (311)
T d1nr0a1         181 --------------------------------FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFE  228 (311)
T ss_dssp             --------------------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECB
T ss_pred             --------------------------------cccccccccccccccccCcccccccccccccccccccccccccccccc
Confidence                                            011233345567899999999999999999999999999999888776


Q ss_pred             ccccc---eeeEEEEEecccccccccccCCCCCcceEEEEEEcCCCCeEEEeeCCCCcceee
Q 015021          347 GYRDA---SCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       347 GyRdA---q~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEvW~~~~g~~v~~  405 (414)
                      ..+.-   .-++|....-.++         +  .   +|+ -+-.+|.|.||++++|+++.|
T Consensus       229 ~~~~~~~~h~~~V~~~~~s~~---------~--~---~l~-tgs~Dg~v~iwd~~t~~~~~~  275 (311)
T d1nr0a1         229 DDSLKNVAHSGSVFGLTWSPD---------G--T---KIA-SASADKTIKIWNVATLKVEKT  275 (311)
T ss_dssp             CTTSSSCSSSSCEEEEEECTT---------S--S---EEE-EEETTSEEEEEETTTTEEEEE
T ss_pred             ccccccccccccccccccCCC---------C--C---EEE-EEeCCCeEEEEECCCCcEEEE
Confidence            43321   1123432211110         1  1   344 366799999999999998754

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.57  E-value=2.3e-05  Score=71.39  Aligned_cols=251  Identities=14%  Similarity=0.131  Sum_probs=142.9

Q ss_pred             CeeeeccCcceeeeeecceEEEEeecCCCC---CceeecccCCCCCCCeEEEEEeEEeCCcEEEEEeccccEEEEEec-C
Q 015021           33 PNLLCALDMHTIALANRYQTVIINWADPEG---LVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDL-K  108 (414)
Q Consensus        33 ~~~~~sp~~~~la~A~~~~~v~~~w~~~~~---~~v~~~g~l~~~~~e~ITs~~~lpl~dw~~I~VG~ssG~vrfyte-~  108 (414)
                      ..++.+|.|+.||+|.+...++-.|+....   ......|.    .+..||++.+-|..+-..|+.|-.+|.|++++. .
T Consensus        21 t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh----~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~   96 (325)
T d1pgua1          21 THLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGH----GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTF   96 (325)
T ss_dssp             CCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTT----TTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEE
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCC----CCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecC
Confidence            467889999999999988877777765442   12344443    246799999998877788999999999999984 3


Q ss_pred             CcEEeec--------ccCccceeEEEEecccCCCCCCCCCCeEEEEeCCe---EEEEeChhHHHHHHHHHHhccccccCC
Q 015021          109 GDLVHRQ--------LIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGV---LARFDGSEIQKMLQRWFQDSNSNFWDQ  177 (414)
Q Consensus       109 G~LL~sQ--------~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ily~~~---iv~IdG~sL~~~Lr~c~~~~~~~~w~~  177 (414)
                      +..+...        ..|..||..|..-.         ..+.|.++-.+.   +..++                   |+ 
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~~v~~s~---------~~~~l~~~~~~~~~~~~~~~-------------------~~-  147 (325)
T d1pgua1          97 DKESNSVEVNVKSEFQVLAGPISDISWDF---------EGRRLCVVGEGRDNFGVFIS-------------------WD-  147 (325)
T ss_dssp             EGGGTEEEEEEEEEEECCSSCEEEEEECT---------TSSEEEEEECCSSCSEEEEE-------------------TT-
T ss_pred             CcceeeeecccccccccccCcEEEEEECC---------CCCccceeeccccceEEEEe-------------------ec-
Confidence            3322221        24555666665311         122233322110   11000                   00 


Q ss_pred             CCccCCCcccccccCCccceecccC-CCCCceeeEEeCCCCCCchhhhccccceeEEEeCCCceeEEEEeccCCCcchhh
Q 015021          178 KPKQRDSEDLENSYERLPHQLWNVS-KYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVG  256 (414)
Q Consensus       178 ~~~~~~~~~~~~~~~~L~ykKW~l~-~~~~i~Daa~~G~~~p~~~d~~s~~~~~~~i~vG~~P~la~y~~~~~~~~s~~~  256 (414)
                       .        ..       ....+. ....+...++.-            .+.+.++++|.+-.+-+|.....+..    
T Consensus       148 -~--------~~-------~~~~~~~h~~~v~~~~~~~------------~~~~~~~~~~~d~~v~~~d~~~~~~~----  195 (325)
T d1pgua1         148 -S--------GN-------SLGEVSGHSQRINACHLKQ------------SRPMRSMTVGDDGSVVFYQGPPFKFS----  195 (325)
T ss_dssp             -T--------CC-------EEEECCSCSSCEEEEEECS------------SSSCEEEEEETTTEEEEEETTTBEEE----
T ss_pred             -c--------cc-------cceeeeecccccccccccc------------cccceEEEeecccccccccccccccc----
Confidence             0        00       001111 122344443321            11122456666655554432111000    


Q ss_pred             hhhhhhhHHHHHHhhhhhhhhhcCCCCCCCCCCCCcccccCCCCccccCCCceeeEEEECCC-CCEEEEEcCCCcEEEEE
Q 015021          257 AILSKVVPATFSTISSLSKMIWRSEQSPKKSEPKPQSFARASPLTCLKDHPRKGERLTLSPS-GSLAAITDSLGRILLLD  335 (414)
Q Consensus       257 al~S~va~av~S~v~S~ak~~W~~~~~~~~~e~kp~~~~~a~pl~~l~D~~R~~~~i~~sP~-~~laa~tD~lGRV~L~D  335 (414)
                                                               .....+........+++.+|+ ++++|++...|.|.++|
T Consensus       196 -----------------------------------------~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd  234 (325)
T d1pgua1         196 -----------------------------------------ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFD  234 (325)
T ss_dssp             -----------------------------------------EEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEE
T ss_pred             -----------------------------------------eecccccCCCCccEEeeeccccceeccccccccceeeee
Confidence                                                     000012222334678999997 58888888899999999


Q ss_pred             cCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEEEcCCCCeEEEeeCCCCcceee
Q 015021          336 TQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       336 ~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEvW~~~~g~~v~~  405 (414)
                      +.++..++.++|+.+.-.+-+......+          ++      +++-+-.+|.|.||++++|+.+.+
T Consensus       235 ~~~~~~~~~l~~~~~~v~~~~~s~~~~d----------g~------~l~s~s~D~~i~iwd~~~~~~~~~  288 (325)
T d1pgua1         235 GKSGEFLKYIEDDQEPVQGGIFALSWLD----------SQ------KFATVGADATIRVWDVTTSKCVQK  288 (325)
T ss_dssp             TTTCCEEEECCBTTBCCCSCEEEEEESS----------SS------EEEEEETTSEEEEEETTTTEEEEE
T ss_pred             eccccccccccccccccccceeeeeccC----------CC------EEEEEeCCCeEEEEECCCCCEEEE
Confidence            9999999999998774322111111001          11      234567899999999999998754

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.54  E-value=7.9e-06  Score=74.00  Aligned_cols=83  Identities=8%  Similarity=0.046  Sum_probs=60.6

Q ss_pred             ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEE
Q 015021          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL  382 (414)
Q Consensus       303 l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~L  382 (414)
                      .......+.+++.+|+|++++++...|.|.++|+.++..++.++|+++.    +.........    .-.|   +.  -+
T Consensus       304 ~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~----V~~~~~~~~~----~~sp---d~--~~  370 (388)
T d1erja_         304 YIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNS----VISVAVANGS----SLGP---EY--NV  370 (388)
T ss_dssp             EECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSC----EEEEEECSSC----TTCT---TC--EE
T ss_pred             cccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCC----EEEEEEecCc----ccCC---CC--CE
Confidence            4455667889999999999999999999999999999999999999883    2221111000    0000   11  24


Q ss_pred             EEEcCCCCeEEEeeCC
Q 015021          383 AIHAPRKGIIEHLAGM  398 (414)
Q Consensus       383 vIyaprRg~lEvW~~~  398 (414)
                      ++-+..+|.|.||+++
T Consensus       371 l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         371 FATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEEEETTSEEEEEEEE
T ss_pred             EEEEeCCCEEEEEeee
Confidence            5668899999999985

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.97  E-value=0.00019  Score=62.43  Aligned_cols=86  Identities=9%  Similarity=0.009  Sum_probs=61.4

Q ss_pred             cccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeeccccc-ceeeEEEEEecccccccccccCCCCCcceE
Q 015021          302 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRD-ASCVFMEMLVNKDAATSSAYYAPVKSDYCL  380 (414)
Q Consensus       302 ~l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRd-Aq~~wi~~~~~~~~~~~~~~~~~~k~~~~l  380 (414)
                      .+......+.+|+.+|++++++++...|.|.++|+.....++.+..... ..+..+...   ++         +  .   
T Consensus       221 ~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s---~~---------~--~---  283 (340)
T d1tbga_         221 TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS---KS---------G--R---  283 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC---SS---------S--C---
T ss_pred             EEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEEC---CC---------C--C---
Confidence            3555556788999999999999999999999999999988877643332 122222211   10         1  1   


Q ss_pred             EEEEEcCCCCeEEEeeCCCCcceee
Q 015021          381 CLAIHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       381 ~LvIyaprRg~lEvW~~~~g~~v~~  405 (414)
                       +++-+-.+|.|.||++++|+++.+
T Consensus       284 -~l~~g~~dg~i~iwd~~~~~~~~~  307 (340)
T d1tbga_         284 -LLLAGYDDFNCNVWDALKADRAGV  307 (340)
T ss_dssp             -EEEEEETTSCEEEEETTTCCEEEE
T ss_pred             -EEEEEECCCEEEEEECCCCcEEEE
Confidence             344567789999999999998854

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.90  E-value=0.0032  Score=53.07  Aligned_cols=102  Identities=10%  Similarity=-0.032  Sum_probs=64.4

Q ss_pred             ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEeccccc--ccccccCCCCCcceE
Q 015021          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAA--TSSAYYAPVKSDYCL  380 (414)
Q Consensus       303 l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~--~~~~~~~~~k~~~~l  380 (414)
                      +.........++.+|+++++++++..|.|.++|+.++..++.++++++.-. .+.........  ..............-
T Consensus       139 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (317)
T d1vyhc1         139 FTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE-CISWAPESSYSSISEATGSETKKSGKPG  217 (317)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE-EEEECCSCGGGGGGGCCSCC-------C
T ss_pred             EccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCce-EEEEeeccccceeeccccceeeeeccCC
Confidence            333445567789999999999999999999999999999999999988422 22211111100  000000000000000


Q ss_pred             EEEEEcCCCCeEEEeeCCCCcceee
Q 015021          381 CLAIHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       381 ~LvIyaprRg~lEvW~~~~g~~v~~  405 (414)
                      .+++-+..+|.|.+|++++|+.+.+
T Consensus       218 ~~~~~~~~d~~i~~~~~~~~~~~~~  242 (317)
T d1vyhc1         218 PFLLSGSRDKTIKMWDVSTGMCLMT  242 (317)
T ss_dssp             CEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             ceeEeccCCCEEEEEECCCCcEEEE
Confidence            1344566789999999999998754

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.88  E-value=0.0044  Score=55.83  Aligned_cols=92  Identities=15%  Similarity=0.108  Sum_probs=56.6

Q ss_pred             CeeeeccCcceeeeeecceEEEEeecCCCCCceeecccCCCCCCCeEEEEEeEEeCCcEEEEEec-cccEEEEEe-cCCc
Q 015021           33 PNLLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGT-SRGYFLVYD-LKGD  110 (414)
Q Consensus        33 ~~~~~sp~~~~la~A~~~~~v~~~w~~~~~~~v~~~g~l~~~~~e~ITs~~~lpl~dw~~I~VG~-ssG~vrfyt-e~G~  110 (414)
                      ..++.||+|++||.+-...-|.+ |+-..... ..+-.+.. -...|+++.|-| .+..++++|. .+.+++++. ++|.
T Consensus        62 ~~~~~sp~g~~latg~~dg~i~i-wd~~~~~~-~~~~~~~~-~~~~v~~v~~s~-d~~~l~~~~~~~~~~~~v~~~~~~~  137 (311)
T d1nr0a1          62 TVAKTSPSGYYCASGDVHGNVRI-WDTTQTTH-ILKTTIPV-FSGPVKDISWDS-ESKRIAAVGEGRERFGHVFLFDTGT  137 (311)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEE-EESSSTTC-CEEEEEEC-SSSCEEEEEECT-TSCEEEEEECCSSCSEEEEETTTCC
T ss_pred             EEEEEeCCCCeEeccccCceEee-eeeecccc-cccccccc-ccCccccccccc-ccccccccccccccccccccccccc
Confidence            34667999999998877654432 54443211 11122222 245688887754 2334444443 245677887 6788


Q ss_pred             EEeecccCccceeEEEEe
Q 015021          111 LVHRQLIHPGRILKLRVR  128 (414)
Q Consensus       111 LL~sQ~lh~~pV~~ik~r  128 (414)
                      .+.....|.++|..+.+.
T Consensus       138 ~~~~l~~h~~~v~~v~~~  155 (311)
T d1nr0a1         138 SNGNLTGQARAMNSVDFK  155 (311)
T ss_dssp             BCBCCCCCSSCEEEEEEC
T ss_pred             cccccccccccccccccc
Confidence            777777889999988863

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=0.011  Score=52.70  Aligned_cols=79  Identities=10%  Similarity=0.004  Sum_probs=56.4

Q ss_pred             CceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEEEc
Q 015021          307 PRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA  386 (414)
Q Consensus       307 ~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIya  386 (414)
                      ...+.+++.+|++++++++...|.|.++|+.++..... +++.+    .+....-.++         ++      +++-+
T Consensus       224 ~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~----~i~~v~~s~~---------g~------~l~s~  283 (337)
T d1gxra_         224 TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL-HLHES----CVLSLKFAYC---------GK------WFVST  283 (337)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE-CCCSS----CEEEEEECTT---------SS------EEEEE
T ss_pred             ccceEEEEEcccccccceeccccccccccccccccccc-ccccc----ccceEEECCC---------CC------EEEEE
Confidence            34577899999999999999999999999999987654 44544    2222111111         11      23446


Q ss_pred             CCCCeEEEeeCCCCcceee
Q 015021          387 PRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       387 prRg~lEvW~~~~g~~v~~  405 (414)
                      -.+|.|.+|++.+|+++.+
T Consensus       284 s~Dg~i~iwd~~~~~~~~~  302 (337)
T d1gxra_         284 GKDNLLNAWRTPYGASIFQ  302 (337)
T ss_dssp             ETTSEEEEEETTTCCEEEE
T ss_pred             eCCCeEEEEECCCCCEEEE
Confidence            6789999999999998854

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.76  E-value=0.0012  Score=60.52  Aligned_cols=50  Identities=16%  Similarity=0.306  Sum_probs=38.1

Q ss_pred             CeEEEEEeEEeCCcEEEEEeccccEEEEEec-CCcEEeeccc--CccceeEEEEe
Q 015021           77 EYITAIEWLVFEEMRALAVGTSRGYFLVYDL-KGDLVHRQLI--HPGRILKLRVR  128 (414)
Q Consensus        77 e~ITs~~~lpl~dw~~I~VG~ssG~vrfyte-~G~LL~sQ~l--h~~pV~~ik~r  128 (414)
                      |.||++.|=  +|-..+|+|..+|.|++|+. +|.+...+.|  |..+|..|.+-
T Consensus         8 ~pIt~~~~s--~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fs   60 (371)
T d1k8kc_           8 EPISCHAWN--KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA   60 (371)
T ss_dssp             SCCCEEEEC--TTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEE
T ss_pred             CCeEEEEEC--CCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEEC
Confidence            557776553  57789999999999999995 4665555544  78999999864

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.55  E-value=0.00014  Score=67.43  Aligned_cols=84  Identities=23%  Similarity=0.243  Sum_probs=62.3

Q ss_pred             ccCCCceeeEEEECCCCCEEEEE--c-CCCcEEEEEcCcceeEeeec-------------ccccceeeEEEEEecccccc
Q 015021          303 LKDHPRKGERLTLSPSGSLAAIT--D-SLGRILLLDTQALVVVRLWK-------------GYRDASCVFMEMLVNKDAAT  366 (414)
Q Consensus       303 l~D~~R~~~~i~~sP~~~laa~t--D-~lGRV~L~D~~~~~vvrmwK-------------GyRdAq~~wi~~~~~~~~~~  366 (414)
                      +..+...+.+|+.+|+|+++|+.  | +.|.|-|+|+.++..++.++             ||++    ||....-.+++ 
T Consensus       227 l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~----~V~~l~fspd~-  301 (393)
T d1sq9a_         227 MINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS----WVMSLSFNDSG-  301 (393)
T ss_dssp             --CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS----CEEEEEECSSS-
T ss_pred             cccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccC----ceeeeccCCCC-
Confidence            45566778999999999887775  3 35789999999999988775             5665    55443322111 


Q ss_pred             cccccCCCCCcceEEEEEEcCCCCeEEEeeCCCCcceee
Q 015021          367 SSAYYAPVKSDYCLCLAIHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       367 ~~~~~~~~k~~~~l~LvIyaprRg~lEvW~~~~g~~v~~  405 (414)
                                +    +++-+..+|.|.||++++|+++.|
T Consensus       302 ----------~----~l~S~s~D~~v~vWd~~~g~~~~~  326 (393)
T d1sq9a_         302 ----------E----TLCSAGWDGKLRFWDVKTKERITT  326 (393)
T ss_dssp             ----------S----EEEEEETTSEEEEEETTTTEEEEE
T ss_pred             ----------C----eeEEECCCCEEEEEECCCCCEEEE
Confidence                      1    567889999999999999999865

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.54  E-value=0.0032  Score=57.53  Aligned_cols=48  Identities=15%  Similarity=0.010  Sum_probs=41.7

Q ss_pred             ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeeccccc
Q 015021          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRD  350 (414)
Q Consensus       303 l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRd  350 (414)
                      +..+.....+++.+|+|+++|+....|.|.++|+.++..+..++++..
T Consensus       197 ~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  244 (371)
T d1k8kc_         197 SSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL  244 (371)
T ss_dssp             CCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSC
T ss_pred             ccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccc
Confidence            445556678899999999888888899999999999999999998876

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.45  E-value=0.024  Score=47.78  Aligned_cols=89  Identities=10%  Similarity=0.045  Sum_probs=56.1

Q ss_pred             eeeeccCcceeeeeecceEEEEeecCCC-CCceeecccCCCCCCCeEEEEEeEEeCCcEEEEEeccccEEEEEec-CCcE
Q 015021           34 NLLCALDMHTIALANRYQTVIINWADPE-GLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDL-KGDL  111 (414)
Q Consensus        34 ~~~~sp~~~~la~A~~~~~v~~~w~~~~-~~~v~~~g~l~~~~~e~ITs~~~lpl~dw~~I~VG~ssG~vrfyte-~G~L  111 (414)
                      .++.||++++||.|-...-|-+ |+-+. .........+.-  ...|+++.|.|- +-..|+.|..+|.|+++.. .+..
T Consensus        16 ~l~fsp~~~~L~s~s~Dg~v~i-wd~~~~~~~~~~~~~~~h--~~~V~~v~f~~~-~~~~l~sg~~d~~v~~w~~~~~~~   91 (342)
T d1yfqa_          16 DIKIIPSKSLLLITSWDGSLTV-YKFDIQAKNVDLLQSLRY--KHPLLCCNFIDN-TDLQIYVGTVQGEILKVDLIGSPS   91 (342)
T ss_dssp             EEEEEGGGTEEEEEETTSEEEE-EEEETTTTEEEEEEEEEC--SSCEEEEEEEES-SSEEEEEEETTSCEEEECSSSSSS
T ss_pred             EEEEeCCCCEEEEEECCCeEEE-EEccCCCcceEEEEecCC--CCCEEEEEEeCC-CCCEEEEcccccceeeeecccccc
Confidence            5788999999999876654332 43222 122333333322  356999988874 5578999999999999995 4444


Q ss_pred             EeecccCccceeEEE
Q 015021          112 VHRQLIHPGRILKLR  126 (414)
Q Consensus       112 L~sQ~lh~~pV~~ik  126 (414)
                      ......+...+....
T Consensus        92 ~~~~~~~~~~~~~~~  106 (342)
T d1yfqa_          92 FQALTNNEANLGICR  106 (342)
T ss_dssp             EEECBSCCCCSCEEE
T ss_pred             ccccccccccccccc
Confidence            444444444444433

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=0.00043  Score=58.17  Aligned_cols=82  Identities=15%  Similarity=0.114  Sum_probs=61.0

Q ss_pred             ccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceE
Q 015021          301 TCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCL  380 (414)
Q Consensus       301 ~~l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l  380 (414)
                      .++.+..+.+.  |++|+|+++|++..+|.|.|+|+.++..++.++|+.+.    |..... +          .+     
T Consensus         9 ~~~~~~~~~V~--c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~----V~~v~~-~----------~~-----   66 (293)
T d1p22a2           9 HCRSETSKGVY--CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGS----VLCLQY-D----------ER-----   66 (293)
T ss_dssp             ECCCSSCCCEE--EEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSC----EEEEEC-C----------SS-----
T ss_pred             eccCCCCCCEE--EEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCC----Eeeeec-c----------cc-----
Confidence            45555555555  57899999999999999999999999999999999883    333221 1          11     


Q ss_pred             EEEEEcCCCCeEEEeeCCCCcceee
Q 015021          381 CLAIHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       381 ~LvIyaprRg~lEvW~~~~g~~v~~  405 (414)
                       +++-+..+|.+.+|+++.+.....
T Consensus        67 -~l~s~s~D~~i~~~~~~~~~~~~~   90 (293)
T d1p22a2          67 -VIITGSSDSTVRVWDVNTGEMLNT   90 (293)
T ss_dssp             -EEEEEETTSCEEEEESSSCCEEEE
T ss_pred             -eeeccccccccccccccccccccc
Confidence             345677888888888888876643

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.37  E-value=0.00022  Score=61.80  Aligned_cols=83  Identities=10%  Similarity=-0.067  Sum_probs=62.6

Q ss_pred             ccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceE
Q 015021          301 TCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCL  380 (414)
Q Consensus       301 ~~l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l  380 (414)
                      ..|.-+...... |++|+|+++|++...|.|.|+|+.++..++.++|+.+    .|....-.+          .  .   
T Consensus         6 ~tL~GH~~~vit-c~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~----~V~~l~~s~----------~--~---   65 (355)
T d1nexb2           6 TTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDG----GVWALKYAH----------G--G---   65 (355)
T ss_dssp             EEEECCSSSCEE-EEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSS----CEEEEEEET----------T--T---
T ss_pred             EEECCcCCCcEE-EEEECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCC----CEEEEEEcC----------C--C---
Confidence            346666665543 6889999999999999999999999999999999987    444332111          1  1   


Q ss_pred             EEEEEcCCCCeEEEeeCCCCccee
Q 015021          381 CLAIHAPRKGIIEHLAGMADENWT  404 (414)
Q Consensus       381 ~LvIyaprRg~lEvW~~~~g~~v~  404 (414)
                       +++-+..+|.|.+|++..++++.
T Consensus        66 -~l~s~s~D~~i~iw~~~~~~~~~   88 (355)
T d1nexb2          66 -ILVSGSTDRTVRVWDIKKGCCTH   88 (355)
T ss_dssp             -EEEEEETTCCEEEEETTTTEEEE
T ss_pred             -EEEEEeccccccccccccccccc
Confidence             34567889999999999887663

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.14  E-value=0.0009  Score=56.59  Aligned_cols=50  Identities=22%  Similarity=0.174  Sum_probs=46.6

Q ss_pred             ccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeeccccc
Q 015021          301 TCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRD  350 (414)
Q Consensus       301 ~~l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRd  350 (414)
                      .+|.-++..+.+|+.+|+++++|++..+|.|.|+|+.++..++.++|+.+
T Consensus        11 ~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~   60 (317)
T d1vyhc1          11 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTD   60 (317)
T ss_dssp             CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSS
T ss_pred             EEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCC
Confidence            46888888999999999999999999999999999999999999999987

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.99  E-value=0.0028  Score=54.70  Aligned_cols=84  Identities=11%  Similarity=0.046  Sum_probs=63.8

Q ss_pred             CccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcce
Q 015021          300 LTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYC  379 (414)
Q Consensus       300 l~~l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~  379 (414)
                      .+.|.-++..+.+|+.+|+++++|++...|.|.++|+.++..++.++++-+    +|....-.+.+         +    
T Consensus        48 ~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~----~v~~v~~~~~~---------~----  110 (340)
T d1tbga_          48 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSS----WVMTCAYAPSG---------N----  110 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCS----CEEEEEECTTS---------S----
T ss_pred             eEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccc----cEEeeEeeccc---------e----
Confidence            356888999999999999999999999999999999999999999998765    33332211111         1    


Q ss_pred             EEEEEEcCCCCeEEEeeCCCCcc
Q 015021          380 LCLAIHAPRKGIIEHLAGMADEN  402 (414)
Q Consensus       380 l~LvIyaprRg~lEvW~~~~g~~  402 (414)
                        +++.+..++.+.+|+......
T Consensus       111 --~l~~~~~d~~i~~~~~~~~~~  131 (340)
T d1tbga_         111 --YVACGGLDNICSIYNLKTREG  131 (340)
T ss_dssp             --EEEEEETTCCEEEEESSSSCS
T ss_pred             --eeeeecccceeeccccccccc
Confidence              445566778888887766543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=96.90  E-value=0.0012  Score=57.46  Aligned_cols=76  Identities=11%  Similarity=-0.073  Sum_probs=55.9

Q ss_pred             EEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEEEcCCCCeE
Q 015021          313 LTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGII  392 (414)
Q Consensus       313 i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~l  392 (414)
                      ++++|+|+|++++...+.|.+||+.++.+++..+.--.-...-+.+.   ++         ++     +|.+-..+.|.|
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~s---pD---------G~-----~l~v~~~~~~~v   64 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMA---PD---------NR-----TAYVLNNHYGDI   64 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEEC---TT---------SS-----EEEEEETTTTEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEEC---CC---------CC-----EEEEEECCCCcE
Confidence            46799999999999999999999999999998873222112222221   11         11     466777889999


Q ss_pred             EEeeCCCCcceee
Q 015021          393 EHLAGMADENWTT  405 (414)
Q Consensus       393 EvW~~~~g~~v~~  405 (414)
                      .+|++++|+.+.+
T Consensus        65 ~~~d~~t~~~~~~   77 (346)
T d1jmxb_          65 YGIDLDTCKNTFH   77 (346)
T ss_dssp             EEEETTTTEEEEE
T ss_pred             EEEeCccCeeeee
Confidence            9999999988753

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.0028  Score=54.17  Aligned_cols=75  Identities=8%  Similarity=0.082  Sum_probs=54.1

Q ss_pred             EEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEEEcCCCCeE
Q 015021          313 LTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGII  392 (414)
Q Consensus       313 i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~l  392 (414)
                      .+++|+++++++....|+|.++|+......+..+++..-...-..+.-+            .  +    +++-+..+|.|
T Consensus       221 ~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~------------~--~----~~~s~s~Dg~i  282 (342)
T d2ovrb2         221 SGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN------------K--N----FVITSSDDGTV  282 (342)
T ss_dssp             EEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC------------S--S----EEEEEETTSEE
T ss_pred             eEEecCCCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC------------C--C----eeEEEcCCCEE
Confidence            3456677889998899999999999999999888876532221111111            0  1    44667789999


Q ss_pred             EEeeCCCCcceee
Q 015021          393 EHLAGMADENWTT  405 (414)
Q Consensus       393 EvW~~~~g~~v~~  405 (414)
                      .||++++|+++.+
T Consensus       283 ~iwd~~tg~~i~~  295 (342)
T d2ovrb2         283 KLWDLKTGEFIRN  295 (342)
T ss_dssp             EEEETTTCCEEEE
T ss_pred             EEEECCCCCEEEE
Confidence            9999999998743

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.60  E-value=0.0045  Score=53.52  Aligned_cols=48  Identities=19%  Similarity=0.122  Sum_probs=42.2

Q ss_pred             ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeec-cccc
Q 015021          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWK-GYRD  350 (414)
Q Consensus       303 l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwK-GyRd  350 (414)
                      +.=+.+.+.+|+.+|+|+++|+++..|.|.++|+.++..++.+. ++.+
T Consensus         8 ~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~   56 (299)
T d1nr0a2           8 RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHAT   56 (299)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSS
T ss_pred             cCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCC
Confidence            55567889999999999999999999999999999999999885 5554

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.58  E-value=0.0079  Score=51.72  Aligned_cols=87  Identities=22%  Similarity=0.150  Sum_probs=56.6

Q ss_pred             ceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEe-eecccccceeeEEEEEecccccccccccCCCCCcceEEEEEEc
Q 015021          308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVR-LWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA  386 (414)
Q Consensus       308 R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvr-mwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIya  386 (414)
                      -...+++.+|+|+++|+.+..|+|.++|+.++..+. .|.++.+    .+....-.+.+.. .... .. +.  -+++-+
T Consensus       163 ~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~----~v~~~~~~p~~~~-~~~~-~~-~~--~~l~sg  233 (287)
T d1pgua2         163 AKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTS----KINAISWKPAEKG-ANEE-EI-EE--DLVATG  233 (287)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSS----CEEEEEECCCC--------CC-SC--CEEEEE
T ss_pred             CceeEEEeccCccccccccccccccceeeccccccccccccccc----ccceeeecccccc-cccc-cC-CC--CeeEee
Confidence            347889999999999999999999999999998765 5777765    2222211110000 0000 00 11  144577


Q ss_pred             CCCCeEEEeeCCCCcce
Q 015021          387 PRKGIIEHLAGMADENW  403 (414)
Q Consensus       387 prRg~lEvW~~~~g~~v  403 (414)
                      ..+|.|.||+++++.+.
T Consensus       234 s~D~~i~iw~~~~~~~~  250 (287)
T d1pgua2         234 SLDTNIFIYSVKRPMKI  250 (287)
T ss_dssp             ETTSCEEEEESSCTTCC
T ss_pred             cCCCeEEEEECCCCCeE
Confidence            78999999999885544

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.47  E-value=0.0082  Score=53.44  Aligned_cols=82  Identities=11%  Similarity=0.021  Sum_probs=60.2

Q ss_pred             ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEE
Q 015021          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL  382 (414)
Q Consensus       303 l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~L  382 (414)
                      .......+.+|+.+|+|++++++...|.|.++|...+..++.++|+.+.    +....-...+               ..
T Consensus       117 ~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~----v~~~~~~~~~---------------~~  177 (388)
T d1erja_         117 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQD----IYSLDYFPSG---------------DK  177 (388)
T ss_dssp             --CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC----EEEEEECTTS---------------SE
T ss_pred             ccCCCCCEEEEEECCCCCcceeccccccccccccccccccccccccccc----cccccccccc---------------cc
Confidence            4445567889999999999999999999999999999999999998873    3222211111               13


Q ss_pred             EEEcCCCCeEEEeeCCCCcce
Q 015021          383 AIHAPRKGIIEHLAGMADENW  403 (414)
Q Consensus       383 vIyaprRg~lEvW~~~~g~~v  403 (414)
                      ++.+-..|.+.+|+++++..+
T Consensus       178 ~~~~~~~~~i~~~d~~~~~~~  198 (388)
T d1erja_         178 LVSGSGDRTVRIWDLRTGQCS  198 (388)
T ss_dssp             EEEEETTSEEEEEETTTTEEE
T ss_pred             ccccccceeeeeeeccccccc
Confidence            355667788888888876655

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.31  E-value=0.0048  Score=52.68  Aligned_cols=50  Identities=14%  Similarity=0.064  Sum_probs=42.5

Q ss_pred             ccccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccc
Q 015021          301 TCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA  351 (414)
Q Consensus       301 ~~l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdA  351 (414)
                      ..|.-+...+.+ +++|+|+++|++..+|.|.|+|+.++..++.++|+.+.
T Consensus        10 ~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~   59 (342)
T d2ovrb2          10 KVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG   59 (342)
T ss_dssp             EEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSC
T ss_pred             EEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCC
Confidence            346666666655 68999999999999999999999999999999999874

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.29  E-value=0.33  Score=42.82  Aligned_cols=64  Identities=11%  Similarity=0.048  Sum_probs=45.6

Q ss_pred             CCCCEEEEEcCCCcEEEEEcCcceeEeeecccccce-eeEEEEEecccccccccccCCCCCcceEEEEEEcCCCCeEEEe
Q 015021          317 PSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDAS-CVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEHL  395 (414)
Q Consensus       317 P~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq-~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEvW  395 (414)
                      |+|++++++...|.|-|+|+.++..++.|++....- +..+.+....              +.   .++-+..+|.|.||
T Consensus       261 ~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~---~l~s~s~dg~i~vw  323 (325)
T d1pgua1         261 LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATG--------------NG---RIISLSLDGTLNFY  323 (325)
T ss_dssp             SSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEE--------------TT---EEEEEETTSCEEEE
T ss_pred             cCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECC--------------CC---EEEEEECCCEEEEE
Confidence            678888888889999999999999999998877641 1111111110              01   34567889999999


Q ss_pred             eC
Q 015021          396 AG  397 (414)
Q Consensus       396 ~~  397 (414)
                      ++
T Consensus       324 dl  325 (325)
T d1pgua1         324 EL  325 (325)
T ss_dssp             ET
T ss_pred             EC
Confidence            86

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.28  E-value=0.007  Score=52.28  Aligned_cols=78  Identities=8%  Similarity=0.029  Sum_probs=55.5

Q ss_pred             CceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEe---eecccccceeeEEEEEecccccccccccCCCCCcceEEEE
Q 015021          307 PRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVR---LWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLA  383 (414)
Q Consensus       307 ~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvr---mwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~Lv  383 (414)
                      +..+.+++.+|+++++++++..|+|.++|+.++..+.   .++|+.+    .+....-.+++         +      ++
T Consensus       179 ~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~----~v~~l~~s~~~---------~------~l  239 (299)
T d1nr0a2         179 PAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTA----KVACVSWSPDN---------V------RL  239 (299)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSS----CEEEEEECTTS---------S------EE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccc----ccccccccccc---------c------ce
Confidence            4567889999999999999999999999999876554   5556554    33332211111         1      34


Q ss_pred             EEcCCCCeEEEeeCCCCcce
Q 015021          384 IHAPRKGIIEHLAGMADENW  403 (414)
Q Consensus       384 IyaprRg~lEvW~~~~g~~v  403 (414)
                      +.+..+|.|.||+++.+...
T Consensus       240 ~sgs~dg~i~iwd~~~~~~~  259 (299)
T d1nr0a2         240 ATGSLDNSVIVWNMNKPSDH  259 (299)
T ss_dssp             EEEETTSCEEEEETTCTTSC
T ss_pred             EEEcCCCEEEEEECCCCCcc
Confidence            55678899999999887543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=96.24  E-value=0.018  Score=48.88  Aligned_cols=77  Identities=10%  Similarity=0.069  Sum_probs=53.5

Q ss_pred             eeeEEEECCCCCEEEEE-cCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEEEcC
Q 015021          309 KGERLTLSPSGSLAAIT-DSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP  387 (414)
Q Consensus       309 ~~~~i~~sP~~~laa~t-D~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap  387 (414)
                      ....|++||+|++++++ ...|+|.++|+.++..++.+++..+..  .+...  .+          ++     ++++...
T Consensus        33 ~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~--~~~~~--~~----------~~-----~~~~~~~   93 (301)
T d1l0qa2          33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQ--GVAVS--PD----------GK-----QVYVTNM   93 (301)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEE--EEEEC--TT----------SS-----EEEEEET
T ss_pred             CceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccccc--ccccc--cc----------cc-----ccccccc
Confidence            35679999999876554 567999999999999999988876532  12111  11          11     3556666


Q ss_pred             CCCeEEEeeCCCCccee
Q 015021          388 RKGIIEHLAGMADENWT  404 (414)
Q Consensus       388 rRg~lEvW~~~~g~~v~  404 (414)
                      ..+.+.+|+.++++.+.
T Consensus        94 ~~~~~~~~~~~~~~~~~  110 (301)
T d1l0qa2          94 ASSTLSVIDTTSNTVAG  110 (301)
T ss_dssp             TTTEEEEEETTTTEEEE
T ss_pred             ccceeeecccccceeee
Confidence            67777888887776653

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.016  Score=51.65  Aligned_cols=83  Identities=13%  Similarity=0.083  Sum_probs=62.7

Q ss_pred             cCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEE
Q 015021          304 KDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLA  383 (414)
Q Consensus       304 ~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~Lv  383 (414)
                      .........++.+|++.+++++...+.|.++|+.++...+..+++.+    .+....-...+            .   ++
T Consensus       138 ~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~----~v~~l~~s~~~------------~---~~  198 (337)
T d1gxra_         138 TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD----GASCIDISNDG------------T---KL  198 (337)
T ss_dssp             ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS----CEEEEEECTTS------------S---EE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccc----ccccccccccc------------c---cc
Confidence            33445567888999999999999999999999999999999998877    23322211111            1   34


Q ss_pred             EEcCCCCeEEEeeCCCCcceee
Q 015021          384 IHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       384 IyaprRg~lEvW~~~~g~~v~~  405 (414)
                      +.+-.+|.+.+|++++|+.+.+
T Consensus       199 ~~~~~d~~v~i~d~~~~~~~~~  220 (337)
T d1gxra_         199 WTGGLDNTVRSWDLREGRQLQQ  220 (337)
T ss_dssp             EEEETTSEEEEEETTTTEEEEE
T ss_pred             ccccccccccccccccceeecc
Confidence            5677899999999999988743

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.64  E-value=0.022  Score=48.61  Aligned_cols=49  Identities=10%  Similarity=-0.008  Sum_probs=42.2

Q ss_pred             ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccc
Q 015021          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA  351 (414)
Q Consensus       303 l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdA  351 (414)
                      +.........+..+|+++++++....|.|.++|+.++..+...+|+.+.
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~  245 (355)
T d1nexb2         197 LSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL  245 (355)
T ss_dssp             ECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred             eeccccccccccccccceeeecccccceEEeeecccccccccccccccc
Confidence            3444556778899999999999999999999999999999999998764

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.51  E-value=0.021  Score=53.18  Aligned_cols=79  Identities=14%  Similarity=-0.029  Sum_probs=53.2

Q ss_pred             eeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeee-----cccccceeeEEEEEecccccccccccCCCCCcceEEEE
Q 015021          309 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLW-----KGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLA  383 (414)
Q Consensus       309 ~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmw-----KGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~Lv  383 (414)
                      ....|+.||||+++++++..|.|.++|+.++......     .|.++    ++....-.++         ++     +|+
T Consensus        63 ~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~----~~~s~~~spD---------G~-----~l~  124 (426)
T d1hzua2          63 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARS----VESSKFKGYE---------DR-----YTI  124 (426)
T ss_dssp             SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEE----EEECCSTTCT---------TT-----EEE
T ss_pred             CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcc----eEEeeeecCC---------CC-----EEE
Confidence            4678999999999999988999999999988754333     23333    3221111111         11     344


Q ss_pred             EEcCCCCeEEEeeCCCCcceee
Q 015021          384 IHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       384 IyaprRg~lEvW~~~~g~~v~~  405 (414)
                      +-....+.+.+|+..+++.+.+
T Consensus       125 v~~~~~~~v~i~d~~~~~~~~~  146 (426)
T d1hzua2         125 AGAYWPPQFAIMDGETLEPKQI  146 (426)
T ss_dssp             EEEEESSEEEEEETTTCCEEEE
T ss_pred             EeecCCCeEEEEcCCccceeEE
Confidence            5555678999999999887643

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.48  E-value=0.02  Score=54.52  Aligned_cols=84  Identities=14%  Similarity=-0.006  Sum_probs=56.7

Q ss_pred             ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCccee-----EeeecccccceeeEEEEEecccccccccccCCCCCc
Q 015021          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVV-----VRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSD  377 (414)
Q Consensus       303 l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~v-----vrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~  377 (414)
                      |+-+ .....|+.||||++++++...|.|.++|+.++..     |++-++.|+    .+....-.++         +|  
T Consensus        58 ~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~----~~~s~~~SpD---------G~--  121 (432)
T d1qksa2          58 LDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARS----IETSKMEGWE---------DK--  121 (432)
T ss_dssp             EECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEE----EEECCSTTCT---------TT--
T ss_pred             EeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCC----eEEecccCCC---------CC--
Confidence            4434 3578999999999999998899999999887652     233334443    2221111111         11  


Q ss_pred             ceEEEEEEcCCCCeEEEeeCCCCcceee
Q 015021          378 YCLCLAIHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       378 ~~l~LvIyaprRg~lEvW~~~~g~~v~~  405 (414)
                         +|+.-+-..+.|.||+..+|+.+.+
T Consensus       122 ---~l~vs~~~~~~v~i~d~~t~~~~~~  146 (432)
T d1qksa2         122 ---YAIAGAYWPPQYVIMDGETLEPKKI  146 (432)
T ss_dssp             ---EEEEEEEETTEEEEEETTTCCEEEE
T ss_pred             ---EEEEEcCCCCeEEEEeCccccceee
Confidence               4656666789999999999987754

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=95.29  E-value=0.073  Score=44.87  Aligned_cols=78  Identities=12%  Similarity=0.069  Sum_probs=54.8

Q ss_pred             eeeEEEECCCCCEEEE--Ec-CCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEEE
Q 015021          309 KGERLTLSPSGSLAAI--TD-SLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIH  385 (414)
Q Consensus       309 ~~~~i~~sP~~~laa~--tD-~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIy  385 (414)
                      ....+.++|+|+.+.+  .| ..++|.++|+.++.+++.+..-.+  ...+.+.   ++         ++     +|++-
T Consensus       201 ~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~--~~~va~s---pd---------g~-----~l~va  261 (301)
T d1l0qa2         201 APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD--PAGIAVT---PD---------GK-----KVYVA  261 (301)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSS--EEEEEEC---TT---------SS-----EEEEE
T ss_pred             CcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCCCC--EEEEEEe---CC---------CC-----EEEEE
Confidence            3456889999975554  33 458899999999999887765333  2222221   11         11     46677


Q ss_pred             cCCCCeEEEeeCCCCcceee
Q 015021          386 APRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       386 aprRg~lEvW~~~~g~~v~~  405 (414)
                      ....|.|.||++.+|+.++|
T Consensus       262 ~~~~~~i~v~D~~t~~~~~~  281 (301)
T d1l0qa2         262 LSFCNTVSVIDTATNTITAT  281 (301)
T ss_dssp             ETTTTEEEEEETTTTEEEEE
T ss_pred             ECCCCeEEEEECCCCeEEEE
Confidence            78899999999999998865

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=95.08  E-value=0.035  Score=49.28  Aligned_cols=78  Identities=13%  Similarity=0.045  Sum_probs=51.8

Q ss_pred             eeEEEECCCCCEEEEE-----cCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEE-
Q 015021          310 GERLTLSPSGSLAAIT-----DSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLA-  383 (414)
Q Consensus       310 ~~~i~~sP~~~laa~t-----D~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~Lv-  383 (414)
                      ...++++|+|+.++++     +..++|.++|..++.++....+--...+.|-      +++            ..++.+ 
T Consensus        23 ~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~~~a~S------pDG------------~~l~va~   84 (373)
T d2madh_          23 TNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLPNPVAA------HSG------------SEFALAS   84 (373)
T ss_pred             ccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCccEEEc------CCC------------CEEEEEe
Confidence            3456689999776665     5668999999999999988765444333322      111            111221 


Q ss_pred             ------EEcCCCCeEEEeeCCCCcceee
Q 015021          384 ------IHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       384 ------IyaprRg~lEvW~~~~g~~v~~  405 (414)
                            ....++|.|.||++++|+.+.+
T Consensus        85 ~~~~~~~~~~~~~~v~v~D~~t~~~~~~  112 (373)
T d2madh_          85 TSFSRIAKGKRTDYVEVFDPVTFLPIAD  112 (373)
T ss_pred             ecCCcccccccceEEEEEECCCCcEEEE
Confidence                  2235678999999999998743

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.04  E-value=0.018  Score=52.74  Aligned_cols=48  Identities=15%  Similarity=0.055  Sum_probs=44.2

Q ss_pred             ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeeccccc
Q 015021          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRD  350 (414)
Q Consensus       303 l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRd  350 (414)
                      +.-+...+.+|+.+|+|+++|++..+|.|.|+|+.+|..++..+||.+
T Consensus       285 ~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~  332 (393)
T d1sq9a_         285 EFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCD  332 (393)
T ss_dssp             CBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGG
T ss_pred             eecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCC
Confidence            445667789999999999999999999999999999999999999988

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.93  E-value=0.036  Score=48.51  Aligned_cols=81  Identities=19%  Similarity=0.189  Sum_probs=53.3

Q ss_pred             CCCceeeEEEECCCCCEEEEEc-----CCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcce
Q 015021          305 DHPRKGERLTLSPSGSLAAITD-----SLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYC  379 (414)
Q Consensus       305 D~~R~~~~i~~sP~~~laa~tD-----~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~  379 (414)
                      |++|...  +++|+|+.+.++|     ..+.|.++|..++.+++..++-....++|-      +++         +   .
T Consensus         1 ~~p~~~~--a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~~~a~S------pDg---------~---~   60 (355)
T d2bbkh_           1 DEPRILE--APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVA------DDG---------S---F   60 (355)
T ss_dssp             CCCCBCC--CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCEEEEC------TTS---------S---C
T ss_pred             CCCcEeE--eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCCceEEc------CCC---------C---E
Confidence            3444444  5689998777775     245699999999999998886555444431      111         1   1


Q ss_pred             EEEEEE-------cCCCCeEEEeeCCCCcceee
Q 015021          380 LCLAIH-------APRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       380 l~LvIy-------aprRg~lEvW~~~~g~~v~~  405 (414)
                      ++.+-.       ..+.|.|.||++.+|+.+.+
T Consensus        61 l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~   93 (355)
T d2bbkh_          61 IAHASTVFSRIARGERTDYVEVFDPVTLLPTAD   93 (355)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEECTTTCCEEEE
T ss_pred             EEEEeCCCccccccCCCCEEEEEECCCCCEEEE
Confidence            122221       24578999999999988754

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.93  E-value=0.052  Score=45.58  Aligned_cols=79  Identities=18%  Similarity=0.211  Sum_probs=55.3

Q ss_pred             CceeeEEEECCCCCEEEEEcCCCcEEEEEcCcce---eEeeecccccc--eeeEEEEEecccccccccccCCCCCcceEE
Q 015021          307 PRKGERLTLSPSGSLAAITDSLGRILLLDTQALV---VVRLWKGYRDA--SCVFMEMLVNKDAATSSAYYAPVKSDYCLC  381 (414)
Q Consensus       307 ~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~---vvrmwKGyRdA--q~~wi~~~~~~~~~~~~~~~~~~k~~~~l~  381 (414)
                      +..+.+|+.+|+|+++|++..+|.|-|+|+.++.   .++.-.|+.++  .+.|..   .             . .   .
T Consensus        11 ~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~---~-------------~-~---~   70 (342)
T d1yfqa_          11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID---N-------------T-D---L   70 (342)
T ss_dssp             SSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEE---S-------------S-S---E
T ss_pred             CCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeC---C-------------C-C---C
Confidence            4458899999999999999999999999987543   23333356553  223321   0             0 0   2


Q ss_pred             EEEEcCCCCeEEEeeCCCCcceee
Q 015021          382 LAIHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       382 LvIyaprRg~lEvW~~~~g~~v~~  405 (414)
                      +++-+..+|.|.+|+++.+.....
T Consensus        71 ~l~sg~~d~~v~~w~~~~~~~~~~   94 (342)
T d1yfqa_          71 QIYVGTVQGEILKVDLIGSPSFQA   94 (342)
T ss_dssp             EEEEEETTSCEEEECSSSSSSEEE
T ss_pred             EEEEcccccceeeeeccccccccc
Confidence            556778899999999998777644

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=93.29  E-value=0.15  Score=43.85  Aligned_cols=48  Identities=8%  Similarity=0.102  Sum_probs=41.3

Q ss_pred             ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeeccccc
Q 015021          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRD  350 (414)
Q Consensus       303 l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRd  350 (414)
                      +.........++.+|+|++++++...+.+.++|+.++...+..++...
T Consensus        81 ~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (360)
T d1k32a3          81 FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREA  128 (360)
T ss_dssp             CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSS
T ss_pred             eeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccc
Confidence            334556678999999999999999999999999999999999887654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=92.39  E-value=0.44  Score=40.27  Aligned_cols=81  Identities=6%  Similarity=-0.125  Sum_probs=55.4

Q ss_pred             ccCCCceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEE
Q 015021          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL  382 (414)
Q Consensus       303 l~D~~R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~L  382 (414)
                      +....+....+..+|+++++++.|  +.|.++|+.++..++-.+--..  ...+.+.   ++         +   .  +|
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~--~~i~v~d~~~~~~~~~~~~~~~--~~~~~~s---~d---------G---~--~l  294 (337)
T d1pbyb_         236 VRIMDVFYFSTAVNPAKTRAFGAY--NVLESFDLEKNASIKRVPLPHS--YYSVNVS---TD---------G---S--TV  294 (337)
T ss_dssp             EEECSSCEEEEEECTTSSEEEEEE--SEEEEEETTTTEEEEEEECSSC--CCEEEEC---TT---------S---C--EE
T ss_pred             ecCCCcceEEEEecccceEEEEcc--ccEEEEECCCCcEEEEEcCCCC--EEEEEEC---CC---------C---C--EE
Confidence            344456677788999999998887  7899999999998875542211  1122221   11         1   1  34


Q ss_pred             EEEcCCCCeEEEeeCCCCcceee
Q 015021          383 AIHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       383 vIyaprRg~lEvW~~~~g~~v~~  405 (414)
                      ++ +-..|.|.||+.++++.+.+
T Consensus       295 ~v-~~~~~~i~v~D~~t~~~v~~  316 (337)
T d1pbyb_         295 WL-GGALGDLAAYDAETLEKKGQ  316 (337)
T ss_dssp             EE-ESBSSEEEEEETTTCCEEEE
T ss_pred             EE-EeCCCcEEEEECCCCcEEEE
Confidence            33 56789999999999999865

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=92.08  E-value=0.092  Score=44.73  Aligned_cols=39  Identities=18%  Similarity=0.172  Sum_probs=34.1

Q ss_pred             ceeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeec
Q 015021          308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWK  346 (414)
Q Consensus       308 R~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwK  346 (414)
                      ....+|+++|+|+++++++..|.|.++|+.++..+...|
T Consensus       280 ~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~  318 (337)
T d1pbyb_         280 HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEE
Confidence            456789999999999999999999999999998877654

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.96  E-value=0.2  Score=42.46  Aligned_cols=63  Identities=8%  Similarity=0.083  Sum_probs=44.5

Q ss_pred             EEECCCCCEEEEEcCCCcEEEEEcCc-ceeEeeecccccce--eeEEEEEecccccccccccCCCCCcceEEEEEEcCCC
Q 015021          313 LTLSPSGSLAAITDSLGRILLLDTQA-LVVVRLWKGYRDAS--CVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRK  389 (414)
Q Consensus       313 i~~sP~~~laa~tD~lGRV~L~D~~~-~~vvrmwKGyRdAq--~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprR  389 (414)
                      ...++++.++|+....|.|.++|+.+ +..++.++|+++.=  +.|.      ++             .   .++-+..+
T Consensus       221 ~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~------~~-------------~---~l~s~g~D  278 (287)
T d1pgua2         221 NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWE------TP-------------S---TLVSSGAD  278 (287)
T ss_dssp             ---CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEE------ET-------------T---EEEEEETT
T ss_pred             ccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEEC------CC-------------C---EEEEEECC
Confidence            33455677899988999999999977 77899999999831  2221      10             1   13557789


Q ss_pred             CeEEEeeC
Q 015021          390 GIIEHLAG  397 (414)
Q Consensus       390 g~lEvW~~  397 (414)
                      |.|.+|++
T Consensus       279 ~~v~iW~i  286 (287)
T d1pgua2         279 ACIKRWNV  286 (287)
T ss_dssp             SCEEEEEE
T ss_pred             CeEEEEEE
Confidence            99999986

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.53  E-value=0.16  Score=47.00  Aligned_cols=48  Identities=13%  Similarity=0.178  Sum_probs=40.5

Q ss_pred             cccCCCceeeEEEECCCCCEEEEE-----cCCCcEEEEEcCcceeEeeecccc
Q 015021          302 CLKDHPRKGERLTLSPSGSLAAIT-----DSLGRILLLDTQALVVVRLWKGYR  349 (414)
Q Consensus       302 ~l~D~~R~~~~i~~sP~~~laa~t-----D~lGRV~L~D~~~~~vvrmwKGyR  349 (414)
                      .+.++.+...+++.||||+++.++     +..|+|.|+|..++.++++-||.+
T Consensus       356 ~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~  408 (426)
T d1hzua2         356 DLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR  408 (426)
T ss_dssp             CCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT
T ss_pred             ccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCCC
Confidence            366777888899999999855432     678999999999999999999986

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=91.51  E-value=0.1  Score=44.58  Aligned_cols=38  Identities=11%  Similarity=0.149  Sum_probs=33.8

Q ss_pred             eeeEEEECCCCCEEEEEcCCCcEEEEEcCcceeEeeec
Q 015021          309 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWK  346 (414)
Q Consensus       309 ~~~~i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwK  346 (414)
                      ....+++||||++++++...|.|.++|+.++..++..+
T Consensus       293 ~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~  330 (346)
T d1jmxb_         293 TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK  330 (346)
T ss_dssp             CCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEE
Confidence            46689999999999998888999999999999998664

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.47  E-value=0.12  Score=42.41  Aligned_cols=68  Identities=18%  Similarity=0.112  Sum_probs=48.5

Q ss_pred             EEECCCCCEEEEEcCCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEEEcCCCCeE
Q 015021          313 LTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGII  392 (414)
Q Consensus       313 i~~sP~~~laa~tD~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~l  392 (414)
                      ..++|++.++++....|.|.++|+.++..++.++|+.+.-.    .... +             ..   +++-+..+|.|
T Consensus       182 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~----~~~~-~-------------~~---~l~sg~~dg~i  240 (293)
T d1p22a2         182 ACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR----CIRF-D-------------NK---RIVSGAYDGKI  240 (293)
T ss_dssp             EEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE----EEEC-C-------------SS---EEEEEETTSCE
T ss_pred             ccccCCCCeEEEecCCCEEEEEecccceeeeeecccceeee----eccc-c-------------ce---EEEEEcCCCEE
Confidence            34556677888889999999999999999999999888432    2111 1             01   23445678999


Q ss_pred             EEeeCCCCc
Q 015021          393 EHLAGMADE  401 (414)
Q Consensus       393 EvW~~~~g~  401 (414)
                      .||++..+.
T Consensus       241 ~iwd~~~~~  249 (293)
T d1p22a2         241 KVWDLVAAL  249 (293)
T ss_dssp             EEEEHHHHT
T ss_pred             EEEECCCCc
Confidence            999876543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=91.19  E-value=0.18  Score=47.50  Aligned_cols=47  Identities=13%  Similarity=0.212  Sum_probs=40.0

Q ss_pred             ccCCCceeeEEEECCCCCEEEEE-----cCCCcEEEEEcCcceeEeeecccc
Q 015021          303 LKDHPRKGERLTLSPSGSLAAIT-----DSLGRILLLDTQALVVVRLWKGYR  349 (414)
Q Consensus       303 l~D~~R~~~~i~~sP~~~laa~t-----D~lGRV~L~D~~~~~vvrmwKGyR  349 (414)
                      |.++.++..+++-||+|+++.++     |..|||.|+|..++.+.+.-||.+
T Consensus       363 l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~~  414 (432)
T d1qksa2         363 ITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDER  414 (432)
T ss_dssp             CCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCTT
T ss_pred             cCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEEeEecCCC
Confidence            55667778889999999877665     678999999999999999999974

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=91.08  E-value=0.16  Score=44.24  Aligned_cols=41  Identities=12%  Similarity=0.128  Sum_probs=34.0

Q ss_pred             ceeeEEEECCCCC--EEEEEcCCCcEEEEEcCcceeEeeeccc
Q 015021          308 RKGERLTLSPSGS--LAAITDSLGRILLLDTQALVVVRLWKGY  348 (414)
Q Consensus       308 R~~~~i~~sP~~~--laa~tD~lGRV~L~D~~~~~vvrmwKGy  348 (414)
                      +....++++|+|+  ++++....|.|.++|+.+|.++|-.++.
T Consensus       300 ~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~  342 (355)
T d2bbkh_         300 HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL  342 (355)
T ss_dssp             EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred             CCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCc
Confidence            4577899999997  4455566799999999999999988764

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=90.90  E-value=0.18  Score=44.47  Aligned_cols=42  Identities=12%  Similarity=0.077  Sum_probs=35.8

Q ss_pred             CceeeEEEECCCCC--EEEEEcCCCcEEEEEcCcceeEeeeccc
Q 015021          307 PRKGERLTLSPSGS--LAAITDSLGRILLLDTQALVVVRLWKGY  348 (414)
Q Consensus       307 ~R~~~~i~~sP~~~--laa~tD~lGRV~L~D~~~~~vvrmwKGy  348 (414)
                      .+....+++||||+  |.++....|.|.+||+.+|..++..+++
T Consensus       317 ~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~  360 (373)
T d2madh_         317 GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVEL  360 (373)
T ss_pred             CCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCC
Confidence            45577899999997  4566788899999999999999999865

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=90.69  E-value=0.78  Score=39.14  Aligned_cols=76  Identities=9%  Similarity=-0.072  Sum_probs=48.9

Q ss_pred             eeeEEEECCCCCEEEE-EcCC-CcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEEEEEEc
Q 015021          309 KGERLTLSPSGSLAAI-TDSL-GRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA  386 (414)
Q Consensus       309 ~~~~i~~sP~~~laa~-tD~l-GRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIya  386 (414)
                      .+..++.||+|+++++ ++.. ..|.++|+.++.+.++.. +...    +....-.+++         +      .++..
T Consensus        44 ~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~-~~~~----v~~~~~spdg---------~------~l~~~  103 (360)
T d1k32a3          44 RIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEE-NLGN----VFAMGVDRNG---------K------FAVVA  103 (360)
T ss_dssp             CEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCC-CCCS----EEEEEECTTS---------S------EEEEE
T ss_pred             CEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeC-CCce----EEeeeecccc---------c------cccee
Confidence            4678999999976665 4444 468899999999887654 3332    1111111111         1      34466


Q ss_pred             CCCCeEEEeeCCCCccee
Q 015021          387 PRKGIIEHLAGMADENWT  404 (414)
Q Consensus       387 prRg~lEvW~~~~g~~v~  404 (414)
                      -.++.+.+|++.+++...
T Consensus       104 ~~~~~~~~~~~~~~~~~~  121 (360)
T d1k32a3         104 NDRFEIMTVDLETGKPTV  121 (360)
T ss_dssp             ETTSEEEEEETTTCCEEE
T ss_pred             ccccccccccccccceee
Confidence            678888899988887653

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=87.62  E-value=0.77  Score=40.86  Aligned_cols=77  Identities=4%  Similarity=-0.108  Sum_probs=50.9

Q ss_pred             eEEEECCCCCEEEEE-c--------CCCcEEEEEcCcceeEeeecccccceeeEEEEEecccccccccccCCCCCcceEE
Q 015021          311 ERLTLSPSGSLAAIT-D--------SLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLC  381 (414)
Q Consensus       311 ~~i~~sP~~~laa~t-D--------~lGRV~L~D~~~~~vvrmwKGyRdAq~~wi~~~~~~~~~~~~~~~~~~k~~~~l~  381 (414)
                      +.++++|+++.+.++ +        ...+|.++|..++..++-+..-+.  ...+.+.   ++         ++  .  +
T Consensus       267 ~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~--~~~~a~s---pD---------G~--~--~  328 (368)
T d1mdah_         267 QMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHD--SDAIIAA---QD---------GA--S--D  328 (368)
T ss_dssp             SCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEE--ECEEEEC---CS---------SS--C--E
T ss_pred             eeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCc--eeEEEEC---CC---------CC--E--E
Confidence            347788888654443 2        224799999999999988764322  2223221   11         11  1  4


Q ss_pred             EEEEcCCCCeEEEeeCCCCcceee
Q 015021          382 LAIHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       382 LvIyaprRg~lEvW~~~~g~~v~~  405 (414)
                      |++.....+.|.|||..+|+.+.+
T Consensus       329 ly~s~~~~~~v~v~D~~tgk~~~~  352 (368)
T d1mdah_         329 NYANSAGTEVLDIYDAASDQDQSS  352 (368)
T ss_dssp             EEEEETTTTEEEEEESSSCEEEEE
T ss_pred             EEEEeCCCCeEEEEECCCCCEEEE
Confidence            667778889999999999998843

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=84.99  E-value=0.66  Score=41.33  Aligned_cols=77  Identities=10%  Similarity=0.015  Sum_probs=48.8

Q ss_pred             EEEECCCCCEEEEEcC----------CCcEEEEEcCcceeEeeecccccceee------EEEEEecccccccccccCCCC
Q 015021          312 RLTLSPSGSLAAITDS----------LGRILLLDTQALVVVRLWKGYRDASCV------FMEMLVNKDAATSSAYYAPVK  375 (414)
Q Consensus       312 ~i~~sP~~~laa~tD~----------lGRV~L~D~~~~~vvrmwKGyRdAq~~------wi~~~~~~~~~~~~~~~~~~k  375 (414)
                      .+.++|+|+.++++..          .+.|.+||..++..+.-...-+.....      .+.+.   ++         +|
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~S---pD---------Gk  136 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNC---AS---------SA  136 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEEC---TT---------SS
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEEC---CC---------CC
Confidence            5889999987776542          345999999999887765443221110      01000   00         11


Q ss_pred             CcceEEEEEEcCCCCeEEEeeCCCCcceee
Q 015021          376 SDYCLCLAIHAPRKGIIEHLAGMADENWTT  405 (414)
Q Consensus       376 ~~~~l~LvIyaprRg~lEvW~~~~g~~v~~  405 (414)
                           +|++.....|.+-+|++..++.+.+
T Consensus       137 -----~l~va~~~~~~v~~~d~~~~~~~~~  161 (368)
T d1mdah_         137 -----CLLFFLFGSSAAAGLSVPGASDDQL  161 (368)
T ss_dssp             -----CEEEEECSSSCEEEEEETTTEEEEE
T ss_pred             -----EEEEEeCCCCeEEEEECCCCcEeEE
Confidence                 3566666779999999999877643

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=80.94  E-value=1.9  Score=36.27  Aligned_cols=36  Identities=17%  Similarity=0.167  Sum_probs=28.0

Q ss_pred             cCCCceeeEEEECCCCCEEEE-EcCCCcEEEEEcCcc
Q 015021          304 KDHPRKGERLTLSPSGSLAAI-TDSLGRILLLDTQAL  339 (414)
Q Consensus       304 ~D~~R~~~~i~~sP~~~laa~-tD~lGRV~L~D~~~~  339 (414)
                      .+.......|++||||+++.+ ....|+|.++|+...
T Consensus        33 ~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~   69 (333)
T d1ri6a_          33 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPD   69 (333)
T ss_dssp             EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCC
Confidence            456677889999999986655 456899999988754