Citrus Sinensis ID: 015024

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410----
MSAFFLFYFVYISASSSLHLRFSQLQVPTDIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAVIESLPYVGAMAVSNLEARQSLVPLGSVEELLATYDSKRNELPPPVTVWEWGWTRSAETWNGRAAMLAVLVLLVLEVTTGEGFLHQWGILPLFQ
cEEEEEEcccccccccHHHHHHHHHccccccccccccHHHHHHHHHHHccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccEEEEEEEcccccHHHHHHHHHHccccEEEEEccccccccccHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHccccccEEEEEEcccccHHcccccccccHHHHHHHHHHHHHHHccccccccEEEEEEccccccccccccHHHHHHHHHHcccccEEEEccccccccHHHHHHHHHHHHHHHHHcccccEEEEccccccHHHHHHHHHHHHHHcccccccccccHHHHccccccccHHHHHHHcccccccccccccccccccccccHHcHHHHHHHHHHHHHHHHHHHccccHHHcccccccc
ccEEEEEEccccccHHHHHHHHHHHHcccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcHHHccEEEEEEEcccccEHHHHHHHHHHccccEEEEEEcccccccccHHHHHHHHHHHHHHHccccccEEEEEccccccHHHHHHHHHHHHHHHccccccccEEEEEEcccccHHHHHHcccccHHHHHHHHHHHHHHHHHccccccEEEEEEcccccccEcccEHHHHHHHHHHccccEEEEEEcccccccHHHHcHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHccccccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHccccccc
MSAFFLFYFVYISassslhlrfsqlqvptdiirlprLFRFLQKPLAQFISVvrapkskegyasigggsplrrITDAQAEELRKSLWeknlpakvyvgmrywhpfTEEAIEQIKRDgitklvvlplypqfsistsgssLRLLESIFREDEYLVnmqhtvipswyqrEGYITAMANLIEKElqnfdspeqVMIFFSAHGvplayveeagdpykAEMEECVDLIMEELEKRKITNAYTLAYqsrvgpvewlkpytdeTIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIekwgrvpalgceatFISDLADAVIESLPYVGAMAVSNLEARQSLVPLGSVEELLATYDskrnelpppvtvwewgwtrsAETWNGRAAMLAVLVLLVLEVttgegflhqwgilplfq
MSAFFLFYFVYISASSSLHLRFSQLQVPTDIIRLPRLFRFLQKPLAQFIsvvrapkskegyasigggsplrrITDAQAEELRKslweknlpakvYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPqfsistsgssLRLLESIFREDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTlayqsrvgpvewlKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAVIESLPYVGAMAVSNLEARQSLVPLGSVEELLAtydskrnelpppvtVWEWGWTRSAETWNGRAAMLAVLVLLVLEVTTGegflhqwgilplfq
MSAFFLFYFVYISASSSLHLRFSQLQVPTDIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAVIESLPYVGAMAVSNLEARQSLVPLGSVEELLATYDSKRNELPPPVTVWEWGWTRSAETWNGRaamlavlvllvlEVTTGEGFLHQWGILPLFQ
**AFFLFYFVYISASSSLHLRFSQLQVPTDIIRLPRLFRFLQKPLAQFISVVRAP*************************LRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAVIESLPYVGAMAVSNLEARQSLVPLGSVEELLATYDSKRNELPPPVTVWEWGWTRSAETWNGRAAMLAVLVLLVLEVTTGEGFLHQWGILPLF*
MSAFFLFYFVYISASSSLHLRFSQLQVPTDIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAVIESLPYV**********************************PPPVTVWEWGWTRSAETWNGRAAMLAVLVLLVLEVTTGEGFLHQWGILPLFQ
MSAFFLFYFVYISASSSLHLRFSQLQVPTDIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAVIESLPYVGAMAVSNLEARQSLVPLGSVEELLATYDSKRNELPPPVTVWEWGWTRSAETWNGRAAMLAVLVLLVLEVTTGEGFLHQWGILPLFQ
MSAFFLFYFVYISASSSLHLRFSQLQVPTDIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAVIESLPYVGAMAVSNLEARQSLVPLGSVEELLATYDSKRNELPPPVTVWEWGWTRSAETWNGRAAMLAVLVLLVLEVTTGEGFLHQWGILPLFQ
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SSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSAFFLFYFVYISASSSLHLRFSQLQVPTDIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAVIESLPYVGAMAVSNLEARQSLVPLGSVEELLATYDSKRNELPPPVTVWEWGWTRSAETWNGRAAMLAVLVLLVLEVTTGEGFLHQWGILPLFQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query414 2.2.26 [Sep-21-2011]
A2Y3Q5526 Ferrochelatase-2, chlorop N/A no 0.929 0.731 0.916 0.0
Q0DIV0526 Ferrochelatase-2, chlorop yes no 0.929 0.731 0.916 0.0
O04921512 Ferrochelatase-2, chlorop yes no 0.922 0.746 0.903 0.0
P42044514 Ferrochelatase-2, chlorop N/A no 0.731 0.589 0.729 1e-135
P42045484 Ferrochelatase-2, chlorop N/A no 0.753 0.644 0.711 1e-134
Q69TB1482 Ferrochelatase-1, chlorop no no 0.763 0.655 0.699 1e-134
P42043466 Ferrochelatase-1, chlorop no no 0.739 0.656 0.702 1e-131
B2J9P0388 Ferrochelatase OS=Nostoc yes no 0.859 0.917 0.545 1e-111
Q10WR6387 Ferrochelatase OS=Trichod yes no 0.859 0.919 0.551 1e-110
Q5N2B2387 Ferrochelatase OS=Synecho yes no 0.859 0.919 0.551 1e-109
>sp|A2Y3Q5|HEMH_ORYSI Ferrochelatase-2, chloroplastic OS=Oryza sativa subsp. indica GN=HEMH PE=2 SV=2 Back     alignment and function desciption
 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/385 (91%), Positives = 369/385 (95%)

Query: 30  DIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQAEELRKSLWEKN 89
           DIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLR+ITDAQAE LRK+L +K+
Sbjct: 142 DIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRQITDAQAEALRKALCDKD 201

Query: 90  LPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDE 149
           +PAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLE IFREDE
Sbjct: 202 IPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLEGIFREDE 261

Query: 150 YLVNMQHTVIPSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDP 209
           YLVNMQHTVIPSWYQREGYI AMA LIEKEL+ F  P++VMIFFSAHGVPLAYVEEAGDP
Sbjct: 262 YLVNMQHTVIPSWYQREGYIKAMATLIEKELRTFSEPQKVMIFFSAHGVPLAYVEEAGDP 321

Query: 210 YKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLA 269
           YKAEMEECVDLIMEELEKR ITN+ TLAYQSRVGPVEWL+PYTDETII+LGQKGVKSLLA
Sbjct: 322 YKAEMEECVDLIMEELEKRGITNSCTLAYQSRVGPVEWLRPYTDETIIELGQKGVKSLLA 381

Query: 270 VPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAVIESLPYVG 329
           VPISFVSEHIETLEEIDVEYKELAL+SGI+ WGRVPALGCE TFI+DLADAVIESLPYVG
Sbjct: 382 VPISFVSEHIETLEEIDVEYKELALESGIKHWGRVPALGCEPTFITDLADAVIESLPYVG 441

Query: 330 AMAVSNLEARQSLVPLGSVEELLATYDSKRNELPPPVTVWEWGWTRSAETWNGRAAMLAV 389
           AMAVSNLEARQ LVPLGSVEELLA YDSKR+ELPPPVTVWEWGWT+SAETWNGRAAMLAV
Sbjct: 442 AMAVSNLEARQPLVPLGSVEELLAAYDSKRDELPPPVTVWEWGWTKSAETWNGRAAMLAV 501

Query: 390 LVLLVLEVTTGEGFLHQWGILPLFQ 414
           L LLVLEVTTGEGFLHQWGILPLF 
Sbjct: 502 LALLVLEVTTGEGFLHQWGILPLFH 526
Catalyzes the ferrous insertion into protoporphyrin IX.
Oryza sativa subsp. indica (taxid: 39946)
EC: 4EC: .EC: 9EC: 9EC: .EC: 1EC: .EC: 1
>sp|Q0DIV0|HEMH2_ORYSJ Ferrochelatase-2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0361200 PE=2 SV=1 Back     alignment and function description
>sp|O04921|HEMH2_ARATH Ferrochelatase-2, chloroplastic OS=Arabidopsis thaliana GN=At2g30390 PE=2 SV=1 Back     alignment and function description
>sp|P42044|HEMH_CUCSA Ferrochelatase-2, chloroplastic OS=Cucumis sativus GN=HEMH PE=2 SV=1 Back     alignment and function description
>sp|P42045|HEMH_HORVU Ferrochelatase-2, chloroplastic OS=Hordeum vulgare GN=HEMH PE=2 SV=1 Back     alignment and function description
>sp|Q69TB1|HEMH1_ORYSJ Ferrochelatase-1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os09g0297000 PE=2 SV=1 Back     alignment and function description
>sp|P42043|HEMH1_ARATH Ferrochelatase-1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=HEM15 PE=2 SV=1 Back     alignment and function description
>sp|B2J9P0|HEMH_NOSP7 Ferrochelatase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=hemH PE=3 SV=1 Back     alignment and function description
>sp|Q10WR6|HEMH_TRIEI Ferrochelatase OS=Trichodesmium erythraeum (strain IMS101) GN=hemH PE=3 SV=1 Back     alignment and function description
>sp|Q5N2B2|HEMH_SYNP6 Ferrochelatase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=hemH PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query414
357520255 527 Ferrochelatase [Medicago truncatula] gi| 0.929 0.730 0.924 0.0
255544441510 ferrochelatase, putative [Ricinus commun 0.929 0.754 0.955 0.0
356512900 531 PREDICTED: ferrochelatase-2, chloroplast 0.929 0.725 0.935 0.0
356527196 531 PREDICTED: ferrochelatase-2, chloroplast 0.929 0.725 0.932 0.0
359480786 524 PREDICTED: ferrochelatase-2, chloroplast 0.929 0.734 0.929 0.0
449444300 522 PREDICTED: ferrochelatase-2, chloroplast 0.929 0.737 0.911 0.0
2429618494 ferrochelatase [Oryza sativa] 0.929 0.779 0.916 0.0
115463419 526 Os05g0361200 [Oryza sativa Japonica Grou 0.929 0.731 0.916 0.0
218196638 580 hypothetical protein OsI_19638 [Oryza sa 0.929 0.663 0.916 0.0
296082661 524 unnamed protein product [Vitis vinifera] 0.929 0.734 0.914 0.0
>gi|357520255|ref|XP_003630416.1| Ferrochelatase [Medicago truncatula] gi|355524438|gb|AET04892.1| Ferrochelatase [Medicago truncatula] Back     alignment and taxonomy information
 Score =  735 bits (1897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/385 (92%), Positives = 373/385 (96%)

Query: 30  DIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQAEELRKSLWEKN 89
           DIIRLPRLF FLQKPLAQF+SV+RAPKSKEGYASIGGGSPLRR+TDAQAEELRKSL+EKN
Sbjct: 143 DIIRLPRLFSFLQKPLAQFVSVLRAPKSKEGYASIGGGSPLRRMTDAQAEELRKSLFEKN 202

Query: 90  LPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDE 149
           +PA VYVGMRYWHPFTEEAIE IKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDE
Sbjct: 203 VPANVYVGMRYWHPFTEEAIELIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDE 262

Query: 150 YLVNMQHTVIPSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDP 209
           YLVNMQHTVIPSWYQREGYI AMANLIEKEL+ FD PE+VMIFFSAHGVP+AYVEEAGDP
Sbjct: 263 YLVNMQHTVIPSWYQREGYIKAMANLIEKELKGFDLPEKVMIFFSAHGVPVAYVEEAGDP 322

Query: 210 YKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLA 269
           YKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETII+LG+KGVKSLLA
Sbjct: 323 YKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIELGKKGVKSLLA 382

Query: 270 VPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAVIESLPYVG 329
           VPISFVSEHIETLEEIDVEYKELAL+SGIE WGRVPALGCE TFISDLADAVIESLPYVG
Sbjct: 383 VPISFVSEHIETLEEIDVEYKELALESGIENWGRVPALGCEPTFISDLADAVIESLPYVG 442

Query: 330 AMAVSNLEARQSLVPLGSVEELLATYDSKRNELPPPVTVWEWGWTRSAETWNGRAAMLAV 389
           AMAVSNLEARQSLVPLGSVEELLA YDS+R ELPPP+ VWEWGWT+SAETWNGRAAM+AV
Sbjct: 443 AMAVSNLEARQSLVPLGSVEELLAAYDSQRRELPPPILVWEWGWTKSAETWNGRAAMIAV 502

Query: 390 LVLLVLEVTTGEGFLHQWGILPLFQ 414
           L+LL LEVTTGEGFLHQWGILPLF+
Sbjct: 503 LLLLFLEVTTGEGFLHQWGILPLFR 527

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255544441|ref|XP_002513282.1| ferrochelatase, putative [Ricinus communis] gi|223547656|gb|EEF49150.1| ferrochelatase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356512900|ref|XP_003525152.1| PREDICTED: ferrochelatase-2, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|356527196|ref|XP_003532198.1| PREDICTED: ferrochelatase-2, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|359480786|ref|XP_002271927.2| PREDICTED: ferrochelatase-2, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449444300|ref|XP_004139913.1| PREDICTED: ferrochelatase-2, chloroplastic-like [Cucumis sativus] gi|12082085|dbj|BAB20760.1| ferrochelatase [Cucumis sativus] Back     alignment and taxonomy information
>gi|2429618|dbj|BAA22284.1| ferrochelatase [Oryza sativa] Back     alignment and taxonomy information
>gi|115463419|ref|NP_001055309.1| Os05g0361200 [Oryza sativa Japonica Group] gi|122169204|sp|Q0DIV0.1|HEMH2_ORYSJ RecName: Full=Ferrochelatase-2, chloroplastic; AltName: Full=Ferrochelatase II; AltName: Full=Heme synthase 2; AltName: Full=Protoheme ferro-lyase 2; Flags: Precursor gi|152032525|sp|A2Y3Q5.2|HEMH_ORYSI RecName: Full=Ferrochelatase-2, chloroplastic; AltName: Full=Ferrochelatase II; AltName: Full=Heme synthase 2; AltName: Full=Protoheme ferro-lyase 2; Flags: Precursor gi|47777462|gb|AAT38095.1| putative ferrochelatase II [Oryza sativa Japonica Group] gi|54287647|gb|AAV31391.1| putative ferrochelatase II [Oryza sativa Japonica Group] gi|113578860|dbj|BAF17223.1| Os05g0361200 [Oryza sativa Japonica Group] gi|215707225|dbj|BAG93685.1| unnamed protein product [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|218196638|gb|EEC79065.1| hypothetical protein OsI_19638 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|296082661|emb|CBI21666.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query414
TAIR|locus:2180642466 FC1 "ferrochelatase 1" [Arabid 0.739 0.656 0.702 3e-117
UNIPROTKB|E1C7D2413 FECH "Ferrochelatase, mitochon 0.698 0.699 0.411 4.4e-52
UNIPROTKB|F1NBT4402 FECH "Ferrochelatase, mitochon 0.698 0.718 0.411 4.4e-52
UNIPROTKB|O42479402 FECH "Ferrochelatase, mitochon 0.698 0.718 0.411 4.4e-52
TIGR_CMR|GSU_3312317 GSU_3312 "ferrochelatase" [Geo 0.676 0.883 0.417 4.4e-52
UNIPROTKB|P22830423 FECH "Ferrochelatase, mitochon 0.698 0.683 0.411 1.2e-51
RGD|1307556388 Fech "ferrochelatase" [Rattus 0.698 0.744 0.417 2.4e-51
UNIPROTKB|F1P9A3423 FECH "Ferrochelatase" [Canis l 0.707 0.692 0.402 2.2e-50
UNIPROTKB|P22600416 FECH "Ferrochelatase, mitochon 0.695 0.692 0.413 3.6e-50
ZFIN|ZDB-GENE-000928-1409 fech "ferrochelatase" [Danio r 0.698 0.706 0.404 5.8e-50
TAIR|locus:2180642 FC1 "ferrochelatase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1155 (411.6 bits), Expect = 3.0e-117, P = 3.0e-117
 Identities = 215/306 (70%), Positives = 263/306 (85%)

Query:    30 DIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQAEELRKSLWEKN 89
             DIIRLPR F+FLQ  +A+FISVVRAPKSKEGYA+IGGGSPLR+ITD QA+ ++ SL  KN
Sbjct:   118 DIIRLPRPFQFLQGTIAKFISVVRAPKSKEGYAAIGGGSPLRKITDEQADAIKMSLQAKN 177

Query:    90 LPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDE 149
             + A VYVGMRYW+PFTEEA++QIK+D IT+LVVLPLYPQ+SIST+GSS+R+L+ +FR+D 
Sbjct:   178 IAANVYVGMRYWYPFTEEAVQQIKKDKITRLVVLPLYPQYSISTTGSSIRVLQDLFRKDP 237

Query:   150 YLVNMQHTVIPSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDP 209
             YL  +   +I SWYQR GY+ +MA+LIEKELQ F  P++VMIFFSAHGVP++YVE AGDP
Sbjct:   238 YLAGVPVAIIKSWYQRRGYVNSMADLIEKELQTFSDPKEVMIFFSAHGVPVSYVENAGDP 297

Query:   210 YKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLA 269
             Y+ +MEEC+DLIMEEL+ R + N + LAYQSRVGPV+WLKPYTDE ++ LG+ GVKSLLA
Sbjct:   298 YQKQMEECIDLIMEELKARGVLNDHKLAYQSRVGPVQWLKPYTDEVLVDLGKSGVKSLLA 357

Query:   270 VPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAVIESLPYVG 329
             VP+SFVSEHIETLEEID+EY+ELAL+SG+E WGRVPALG   +FI+DLADAVIESLP   
Sbjct:   358 VPVSFVSEHIETLEEIDMEYRELALESGVENWGRVPALGLTPSFITDLADAVIESLPSAE 417

Query:   330 AMAVSN 335
             AM+  N
Sbjct:   418 AMSNPN 423
GO:0004325 "ferrochelatase activity" evidence=IEA;IGI;ISS
GO:0006783 "heme biosynthetic process" evidence=IEA;ISS;IMP
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0005739 "mitochondrion" evidence=IDA
GO:0009536 "plastid" evidence=IDA
GO:0006979 "response to oxidative stress" evidence=IEP;RCA
GO:0033014 "tetrapyrrole biosynthetic process" evidence=IMP
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0006944 "cellular membrane fusion" evidence=RCA
GO:0009611 "response to wounding" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA
GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA
GO:0043069 "negative regulation of programmed cell death" evidence=RCA
GO:0052542 "defense response by callose deposition" evidence=RCA
UNIPROTKB|E1C7D2 FECH "Ferrochelatase, mitochondrial" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NBT4 FECH "Ferrochelatase, mitochondrial" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|O42479 FECH "Ferrochelatase, mitochondrial" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_3312 GSU_3312 "ferrochelatase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|P22830 FECH "Ferrochelatase, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1307556 Fech "ferrochelatase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1P9A3 FECH "Ferrochelatase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P22600 FECH "Ferrochelatase, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-000928-1 fech "ferrochelatase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q3ALP2HEMH_SYNSC4, ., 9, 9, ., 1, ., 10.51560.86230.9130yesno
P42045HEMH_HORVU4, ., 9, 9, ., 1, ., 10.71150.75360.6446N/Ano
A9BEE9HEMH_PROM44, ., 9, 9, ., 1, ., 10.50780.86230.9130yesno
B8HK77HEMH_CYAP44, ., 9, 9, ., 1, ., 10.55110.85990.9198yesno
A2BVI7HEMH_PROM54, ., 9, 9, ., 1, ., 10.49470.86230.9130yesno
Q8YQR8HEMH_NOSS14, ., 9, 9, ., 1, ., 10.53540.85990.9175yesno
Q10WR6HEMH_TRIEI4, ., 9, 9, ., 1, ., 10.55110.85990.9198yesno
Q2JHZ4HEMH_SYNJB4, ., 9, 9, ., 1, ., 10.55470.69320.8343yesno
A8G3P0HEMH_PROM24, ., 9, 9, ., 1, ., 10.49210.86230.9130yesno
B0JRN7HEMH_MICAN4, ., 9, 9, ., 1, ., 10.53760.85020.9095yesno
Q0DIV0HEMH2_ORYSJ4, ., 9, 9, ., 1, ., 10.91680.92990.7319yesno
Q5N2B2HEMH_SYNP64, ., 9, 9, ., 1, ., 10.55110.85990.9198yesno
Q31S00HEMH_SYNE74, ., 9, 9, ., 1, ., 10.55110.85990.9198yesno
Q7V6C6HEMH_PROMM4, ., 9, 9, ., 1, ., 10.50260.86230.9130yesno
B1XL79HEMH_SYNP24, ., 9, 9, ., 1, ., 10.54850.85740.9196yesno
O04921HEMH2_ARATH4, ., 9, 9, ., 1, ., 10.90310.92270.7460yesno
B7KGB9HEMH_CYAP74, ., 9, 9, ., 1, ., 10.53800.85990.9198yesno
Q8DGU6HEMH_THEEB4, ., 9, 9, ., 1, ., 10.55640.85990.9175yesno
A3PBP9HEMH_PROM04, ., 9, 9, ., 1, ., 10.49470.86230.9130yesno
Q7VD58HEMH_PROMA4, ., 9, 9, ., 1, ., 10.50780.86710.9181yesno
Q7U5G0HEMH_SYNPX4, ., 9, 9, ., 1, ., 10.51820.86230.9130yesno
P54225HEMH_SYNY34, ., 9, 9, ., 1, ., 10.54330.85990.9198N/Ano
A2BQ06HEMH_PROMS4, ., 9, 9, ., 1, ., 10.49470.86230.9130yesno
Q7NMC7HEMH_GLOVI4, ., 9, 9, ., 1, ., 10.58100.70280.8899yesno
A5GJF5HEMH_SYNPW4, ., 9, 9, ., 1, ., 10.51560.86230.9130yesno
Q2JVK5HEMH_SYNJA4, ., 9, 9, ., 1, ., 10.54790.69320.8416yesno
B2J9P0HEMH_NOSP74, ., 9, 9, ., 1, ., 10.54590.85990.9175yesno
Q3MCT9HEMH_ANAVT4, ., 9, 9, ., 1, ., 10.52750.85990.9175yesno
A5GS98HEMH_SYNR34, ., 9, 9, ., 1, ., 10.52480.85500.9147yesno
Q7V2F5HEMH_PROMP4, ., 9, 9, ., 1, ., 10.49610.85500.9053yesno
Q46GQ1HEMH_PROMT4, ., 9, 9, ., 1, ., 10.50260.86710.9181yesno
B7K399HEMH_CYAP84, ., 9, 9, ., 1, ., 10.53540.85990.9198yesno
A2C7Q7HEMH_PROM34, ., 9, 9, ., 1, ., 10.50520.86230.9130yesno
A2Y3Q5HEMH_ORYSI4, ., 9, 9, ., 1, ., 10.91680.92990.7319N/Ano
Q0I8L9HEMH_SYNS34, ., 9, 9, ., 1, ., 10.51820.86230.9130yesno
A2C0Y4HEMH_PROM14, ., 9, 9, ., 1, ., 10.50260.86710.9181yesno
Q31C09HEMH_PROM94, ., 9, 9, ., 1, ., 10.49470.86230.9130yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer4.99.1.10.991
3rd Layer4.99.10.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query414
PLN02449485 PLN02449, PLN02449, ferrochelatase 0.0
PRK00035333 PRK00035, hemH, ferrochelatase; Reviewed 1e-127
pfam00762311 pfam00762, Ferrochelatase, Ferrochelatase 1e-121
COG0276320 COG0276, HemH, Protoheme ferro-lyase (ferrochelata 1e-109
TIGR00109322 TIGR00109, hemH, ferrochelatase 1e-107
cd00419135 cd00419, Ferrochelatase_C, Ferrochelatase, C-termi 3e-57
cd03411159 cd03411, Ferrochelatase_N, Ferrochelatase, N-termi 1e-49
PRK12435311 PRK12435, PRK12435, ferrochelatase; Provisional 4e-36
cd03409101 cd03409, Chelatase_Class_II, Class II Chelatase: a 3e-09
cd03409101 cd03409, Chelatase_Class_II, Class II Chelatase: a 1e-06
>gnl|CDD|178068 PLN02449, PLN02449, ferrochelatase Back     alignment and domain information 
 Score =  732 bits (1891), Expect = 0.0
 Identities = 321/377 (85%), Positives = 345/377 (91%), Gaps = 9/377 (2%)

Query: 30  DIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQAEELRKSLWEKN 89
           DIIRLPRLFRFLQKPLAQFIS +RAPKSKEGYASIGGGSPLR+ITD QAE L K+L  KN
Sbjct: 118 DIIRLPRLFRFLQKPLAQFISNLRAPKSKEGYASIGGGSPLRKITDEQAEALAKALEAKN 177

Query: 90  LPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDE 149
           LPAKVYVGMRYWHPFTEEAI+QIK DGITKLVVLPLYPQFSISTSGSSLRLLESIFREDE
Sbjct: 178 LPAKVYVGMRYWHPFTEEAIDQIKADGITKLVVLPLYPQFSISTSGSSLRLLESIFREDE 237

Query: 150 YLVNMQHTVIPSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDP 209
           YLVNMQHTVIPSWYQREGY+ AMA+LI+KEL  F  PE+V IFFSAHGVP++YVEEAGDP
Sbjct: 238 YLVNMQHTVIPSWYQREGYVKAMADLIKKELAKFSDPEEVHIFFSAHGVPVSYVEEAGDP 297

Query: 210 YKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLA 269
           YKA+MEECVDLIMEEL+ R I N +TLAYQSRVGPVEWLKPYTDETI++LG+KGVKSLLA
Sbjct: 298 YKAQMEECVDLIMEELKARGILNRHTLAYQSRVGPVEWLKPYTDETIVELGKKGVKSLLA 357

Query: 270 VPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAVIESLPYVG 329
           VPISFVSEHIETLEEID+EY+ELAL+SGIE WGRVPALGCE TFISDLADAVIE+LPYVG
Sbjct: 358 VPISFVSEHIETLEEIDMEYRELALESGIENWGRVPALGCEPTFISDLADAVIEALPYVG 417

Query: 330 AMAVSNLEARQSLVPLGSVEELLATYDSKRNELPPPVTVWEWGWTRSAETWNGRAAMLAV 389
           AMAVSNLEARQSLVPLGSVEELLATYDS+R EL PPV VWEWGWT        +AAMLAV
Sbjct: 418 AMAVSNLEARQSLVPLGSVEELLATYDSQRREL-PPVAVWEWGWT--------KAAMLAV 468

Query: 390 LVLLVLEVTTGEGFLHQ 406
           L+LLVLEVT+G G LHQ
Sbjct: 469 LLLLVLEVTSGFGNLHQ 485

Length = 485
>gnl|CDD|234585 PRK00035, hemH, ferrochelatase; Reviewed Back     alignment and domain information
>gnl|CDD|216106 pfam00762, Ferrochelatase, Ferrochelatase Back     alignment and domain information
>gnl|CDD|223353 COG0276, HemH, Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|232827 TIGR00109, hemH, ferrochelatase Back     alignment and domain information
>gnl|CDD|238240 cd00419, Ferrochelatase_C, Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway Back     alignment and domain information
>gnl|CDD|239504 cd03411, Ferrochelatase_N, Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway Back     alignment and domain information
>gnl|CDD|183526 PRK12435, PRK12435, ferrochelatase; Provisional Back     alignment and domain information
>gnl|CDD|239503 cd03409, Chelatase_Class_II, Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings Back     alignment and domain information
>gnl|CDD|239503 cd03409, Chelatase_Class_II, Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 414
PLN02449485 ferrochelatase 100.0
COG0276320 HemH Protoheme ferro-lyase (ferrochelatase) [Coenz 100.0
PF00762316 Ferrochelatase: Ferrochelatase; InterPro: IPR00101 100.0
TIGR00109322 hemH ferrochelatase. Human ferrochelatase, found a 100.0
KOG1321395 consensus Protoheme ferro-lyase (ferrochelatase) [ 100.0
PRK12435311 ferrochelatase; Provisional 100.0
PRK00035333 hemH ferrochelatase; Reviewed 100.0
cd03411159 Ferrochelatase_N Ferrochelatase, N-terminal domain 100.0
cd00419135 Ferrochelatase_C Ferrochelatase, C-terminal domain 100.0
PRK02395279 hypothetical protein; Provisional 99.72
PHA0233735 putative high light inducible protein 99.48
COG2138245 Sirohydrochlorin ferrochelatase [Inorganic ion tra 99.31
cd03409101 Chelatase_Class_II Class II Chelatase: a family of 99.25
cd03415125 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelata 99.1
PLN02757154 sirohydrochlorine ferrochelatase 99.08
PRK00923126 sirohydrochlorin cobaltochelatase; Reviewed 99.07
PLN02757154 sirohydrochlorine ferrochelatase 99.03
cd03409101 Chelatase_Class_II Class II Chelatase: a family of 98.99
cd03414117 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (Cbi 98.96
PLN00014250 light-harvesting-like protein 3; Provisional 98.95
PF06180262 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 98.95
PRK05782335 bifunctional sirohydrochlorin cobalt chelatase/pre 98.84
PLN00084214 photosystem II subunit S (PsbS); Provisional 98.81
cd03414117 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (Cbi 98.8
PRK00923126 sirohydrochlorin cobaltochelatase; Reviewed 98.7
PF01903105 CbiX: CbiX; InterPro: IPR002762 Cobalamin (vitamin 98.7
cd03415125 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelata 98.64
cd03412127 CbiK_N Anaerobic cobalamin biosynthetic cobalt che 98.6
cd03416101 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (Cbi 98.35
PF01903105 CbiX: CbiX; InterPro: IPR002762 Cobalamin (vitamin 98.28
PRK05782 335 bifunctional sirohydrochlorin cobalt chelatase/pre 98.25
cd03412127 CbiK_N Anaerobic cobalamin biosynthetic cobalt che 98.25
cd03416101 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (Cbi 98.18
COG4822265 CbiK Cobalamin biosynthesis protein CbiK, Co2+ che 98.1
PRK02395279 hypothetical protein; Provisional 98.04
cd03413103 CbiK_C Anaerobic cobalamin biosynthetic cobalt che 97.98
PRK00035333 hemH ferrochelatase; Reviewed 97.76
TIGR00109322 hemH ferrochelatase. Human ferrochelatase, found a 97.76
COG0276320 HemH Protoheme ferro-lyase (ferrochelatase) [Coenz 97.67
PLN02449485 ferrochelatase 97.65
PRK12435311 ferrochelatase; Provisional 97.59
PF00504156 Chloroa_b-bind: Chlorophyll A-B binding protein; I 97.41
PF00504156 Chloroa_b-bind: Chlorophyll A-B binding protein; I 97.4
PF00762316 Ferrochelatase: Ferrochelatase; InterPro: IPR00101 97.36
cd03413103 CbiK_C Anaerobic cobalamin biosynthetic cobalt che 97.31
COG2138245 Sirohydrochlorin ferrochelatase [Inorganic ion tra 97.22
PF06180262 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 97.07
PLN00147252 light-harvesting complex I chlorophyll-a/b binding 96.95
PLN00100246 light-harvesting complex chlorophyll-a/b protein o 96.91
PLN00089209 fucoxanthin-chlorophyll a/c binding protein; Provi 96.89
cd00419135 Ferrochelatase_C Ferrochelatase, C-terminal domain 96.58
PLN00120202 fucoxanthin-chlorophyll a-c binding protein; Provi 96.56
PLN00099243 light-harvesting complex IChlorophyll A-B binding 96.56
PLN00048 262 photosystem I light harvesting chlorophyll a/b bin 96.54
PLN00025262 photosystem II light harvesting chlorophyll a/b bi 96.54
PLN00101250 Photosystem I light-harvesting complex type 4 prot 96.46
PLN00048262 photosystem I light harvesting chlorophyll a/b bin 96.44
PLN00097244 photosystem I light harvesting complex Lhca2/4, ch 96.38
PLN00171324 photosystem light-harvesting complex -chlorophyll 96.35
PLN00098267 light-harvesting complex I chlorophyll a/b-binding 96.34
PLN00187286 photosystem II light-harvesting complex II protein 96.29
PLN00101 250 Photosystem I light-harvesting complex type 4 prot 96.23
PLN00098 267 light-harvesting complex I chlorophyll a/b-binding 95.67
PLN00187 286 photosystem II light-harvesting complex II protein 95.5
PLN00170 255 photosystem II light-harvesting-Chl-binding protei 95.25
PLN00097 244 photosystem I light harvesting complex Lhca2/4, ch 95.2
PLN00025 262 photosystem II light harvesting chlorophyll a/b bi 95.15
PLN00147 252 light-harvesting complex I chlorophyll-a/b binding 95.02
PLN00170255 photosystem II light-harvesting-Chl-binding protei 94.91
cd03411159 Ferrochelatase_N Ferrochelatase, N-terminal domain 94.79
KOG1321395 consensus Protoheme ferro-lyase (ferrochelatase) [ 94.74
PLN00171 324 photosystem light-harvesting complex -chlorophyll 94.56
PLN00100 246 light-harvesting complex chlorophyll-a/b protein o 93.34
COG4822265 CbiK Cobalamin biosynthesis protein CbiK, Co2+ che 93.13
PLN00089209 fucoxanthin-chlorophyll a/c binding protein; Provi 92.85
PLN00099 243 light-harvesting complex IChlorophyll A-B binding 92.65
PRK10481224 hypothetical protein; Provisional 85.98
COG1453391 Predicted oxidoreductases of the aldo/keto reducta 84.88
PLN00120202 fucoxanthin-chlorophyll a-c binding protein; Provi 82.57
>PLN02449 ferrochelatase Back     alignment and domain information 
Probab=100.00  E-value=1.2e-105  Score=826.48  Aligned_cols=396  Identities=82%  Similarity=1.247  Sum_probs=369.2

Q ss_pred             ceEEEEeccccCCcchHHHHHHhhcCCCCcccCCcchhhhHHHHHHHhcCCCchhHHHHHhccCCCCCchHHHHHHHHHH
Q 015024            2 SAFFLFYFVYISASSSLHLRFSQLQVPTDIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQAEEL   81 (414)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~fL~~flsD~rVi~lp~~~~~~~~~L~~~I~~~R~~k~~~~Y~~IgggSPL~~~T~~qa~~L   81 (414)
                      +||||.|+|+|++.++|++||+|||+||+||++|+++|++|++|+++|+++|++|++++|++|||||||+.+|++|+++|
T Consensus        90 ~gVLLlNlGgPes~~dV~pFL~nlfsD~~II~lP~~~~~~~~~La~~Ia~~R~~ks~~~Y~~IGGgSPL~~iT~~Qa~~L  169 (485)
T PLN02449         90 VGVLLLNLGGPETLDDVQPFLYNLFADPDIIRLPRLFRFLQKPLAQFISNLRAPKSKEGYASIGGGSPLRKITDEQAEAL  169 (485)
T ss_pred             eEEEEEeCCCCCChhHHHHHHHHhcCCCCeeeCchhhhHHHHHHHHHHhccCcHHHHHHHHHCCCCCchHHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHHHHHhccccCCcceEEeCC
Q 015024           82 RKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVIPS  161 (414)
Q Consensus        82 ~~~L~~~~~~~~V~~amry~~P~i~e~l~~l~~~G~~~IivlPLyPqyS~~Ttgs~~~~~~e~~~~~~~~~~~~~~~i~~  161 (414)
                      ++.|++.+.+++|++|||||+|+++|++++|+++|+++||+||||||||.+||||+++.+.+..++......+++++|++
T Consensus       170 q~~L~~~~~~~~V~~aMRY~~P~iedal~~l~~~G~~~iVvLPLYPQyS~sTtgSs~~~l~~~~~~~~~~~~~~~~~I~~  249 (485)
T PLN02449        170 AKALEAKNLPAKVYVGMRYWHPFTEEAIDQIKADGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVIPS  249 (485)
T ss_pred             HHHHhccCCCeEEEEhhhcCCCCHHHHHHHHHhcCCCeEEEEECCcccccccHHHHHHHHHHHHhhcccccCCeeEEecc
Confidence            99998777789999999999999999999999999999999999999999999999999988886544333568899999


Q ss_pred             CCCChHHHHHHHHHHHHHHHhCCCCCceEEEEeecCChhhhhcccCCchHHHHHHHHHHHHHHhccccCCCCEEEEEecC
Q 015024          162 WYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSR  241 (414)
Q Consensus       162 ~~~~p~yI~a~a~~I~~~l~~~~~~~~~~LlfSaHgiP~~~i~~~GDpY~~~~~~t~~~l~e~l~~~~~~~~~~lafQSr  241 (414)
                      ||+||.||+|++++|++++++.+.+++++|||||||+|+++++++||||++||++|+++|+++|+.++..++|.++||||
T Consensus       250 ~~~~p~yI~A~a~~I~~~l~~~~~~~~~~LlFSAHGlP~~~v~~~GDpY~~q~~~ta~lI~~~L~~~~~~~~~~layQSR  329 (485)
T PLN02449        250 WYQREGYVKAMADLIKKELAKFSDPEEVHIFFSAHGVPVSYVEEAGDPYKAQMEECVDLIMEELKARGILNRHTLAYQSR  329 (485)
T ss_pred             ccCChHHHHHHHHHHHHHHHhccCcCCcEEEEecCCChhhhhhhcCCChHHHHHHHHHHHHHHhCCCCCCCCeEEEEeCC
Confidence            99999999999999999998876566789999999999999966799999999999999999998754224699999999


Q ss_pred             cCCCCCCCCcHHHHHHHHhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHhcCCeeEEEcCCCCCCHHHHHHHHHHH
Q 015024          242 VGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAV  321 (414)
Q Consensus       242 ~G~~~WL~P~t~d~L~~L~~~G~k~VvVvP~gFvsD~lETl~Eid~e~~e~a~~~G~~~~~~vp~lNd~p~fi~~La~lV  321 (414)
                      +||.+||+|+|+|+|++|+++|+|+|+||||||++||+|||||||+|++++|+++|+++|.|+||||+||.||++|+++|
T Consensus       330 ~Gp~eWL~P~t~d~L~~L~~~Gvk~VlvvPigFvSDhiETL~EiDiE~re~a~e~G~~~~~rVP~LN~~p~FI~~La~lV  409 (485)
T PLN02449        330 VGPVEWLKPYTDETIVELGKKGVKSLLAVPISFVSEHIETLEEIDMEYRELALESGIENWGRVPALGCEPTFISDLADAV  409 (485)
T ss_pred             CCCCCCCCCCHHHHHHHHHHcCCCeEEEECCcccccchHHHHHHHHHHHHHHHHcCCceEEEcCCCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCCcccccchhhhhccccCcchhhhhhcchhhccCCCCCCcccccCCcchhhhhhhHHHHHHHHHHHHHHHHhCc
Q 015024          322 IESLPYVGAMAVSNLEARQSLVPLGSVEELLATYDSKRNELPPPVTVWEWGWTRSAETWNGRAAMLAVLVLLVLEVTTGE  401 (414)
Q Consensus       322 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~E~~ngR~Am~g~~~~~~~e~~~g~  401 (414)
                      .+++....+...+..+.+..+++.+.|++.+.+++..++.+. |...|.||++.        +||+||++++..|++||+
T Consensus       410 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~  480 (485)
T PLN02449        410 IEALPYVGAMAVSNLEARQSLVPLGSVEELLATYDSQRRELP-PVAVWEWGWTK--------AAMLAVLLLLVLEVTSGF  480 (485)
T ss_pred             HHHhhcccccccccCCCcccchhhcchHHHHhhhhhccccCC-Cchhhhhcccc--------hHHHHHHHHHHHHHHcCC
Confidence            999876444455666677778888999999999998888887 99999999997        999999999999999999


Q ss_pred             chhhh
Q 015024          402 GFLHQ  406 (414)
Q Consensus       402 ~~~~~  406 (414)
                      |.+++
T Consensus       481 ~~~~~  485 (485)
T PLN02449        481 GNLHQ  485 (485)
T ss_pred             CcCCC
Confidence            99874

>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism] Back     alignment and domain information
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc Back     alignment and domain information
>TIGR00109 hemH ferrochelatase Back     alignment and domain information
>KOG1321 consensus Protoheme ferro-lyase (ferrochelatase) [Coenzyme transport and metabolism] Back     alignment and domain information
>PRK12435 ferrochelatase; Provisional Back     alignment and domain information
>PRK00035 hemH ferrochelatase; Reviewed Back     alignment and domain information
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway Back     alignment and domain information
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway Back     alignment and domain information
>PRK02395 hypothetical protein; Provisional Back     alignment and domain information
>PHA02337 putative high light inducible protein Back     alignment and domain information
>COG2138 Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings Back     alignment and domain information
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain Back     alignment and domain information
>PLN02757 sirohydrochlorine ferrochelatase Back     alignment and domain information
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed Back     alignment and domain information
>PLN02757 sirohydrochlorine ferrochelatase Back     alignment and domain information
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings Back     alignment and domain information
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain Back     alignment and domain information
>PLN00014 light-harvesting-like protein 3; Provisional Back     alignment and domain information
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ] Back     alignment and domain information
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated Back     alignment and domain information
>PLN00084 photosystem II subunit S (PsbS); Provisional Back     alignment and domain information
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain Back     alignment and domain information
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed Back     alignment and domain information
>PF01903 CbiX: CbiX; InterPro: IPR002762 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt Back     alignment and domain information
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain Back     alignment and domain information
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain Back     alignment and domain information
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain Back     alignment and domain information
>PF01903 CbiX: CbiX; InterPro: IPR002762 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt Back     alignment and domain information
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated Back     alignment and domain information
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain Back     alignment and domain information
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain Back     alignment and domain information
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism] Back     alignment and domain information
>PRK02395 hypothetical protein; Provisional Back     alignment and domain information
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain Back     alignment and domain information
>PRK00035 hemH ferrochelatase; Reviewed Back     alignment and domain information
>TIGR00109 hemH ferrochelatase Back     alignment and domain information
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism] Back     alignment and domain information
>PLN02449 ferrochelatase Back     alignment and domain information
>PRK12435 ferrochelatase; Provisional Back     alignment and domain information
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein Back     alignment and domain information
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein Back     alignment and domain information
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc Back     alignment and domain information
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain Back     alignment and domain information
>COG2138 Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ] Back     alignment and domain information
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional Back     alignment and domain information
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional Back     alignment and domain information
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional Back     alignment and domain information
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway Back     alignment and domain information
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional Back     alignment and domain information
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional Back     alignment and domain information
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional Back     alignment and domain information
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional Back     alignment and domain information
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional Back     alignment and domain information
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional Back     alignment and domain information
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional Back     alignment and domain information
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional Back     alignment and domain information
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional Back     alignment and domain information
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional Back     alignment and domain information
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional Back     alignment and domain information
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional Back     alignment and domain information
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional Back     alignment and domain information
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional Back     alignment and domain information
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional Back     alignment and domain information
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional Back     alignment and domain information
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional Back     alignment and domain information
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional Back     alignment and domain information
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway Back     alignment and domain information
>KOG1321 consensus Protoheme ferro-lyase (ferrochelatase) [Coenzyme transport and metabolism] Back     alignment and domain information
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional Back     alignment and domain information
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional Back     alignment and domain information
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism] Back     alignment and domain information
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional Back     alignment and domain information
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional Back     alignment and domain information
>PRK10481 hypothetical protein; Provisional Back     alignment and domain information
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only] Back     alignment and domain information
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query414
2qd3_A359 Wild Type Human Ferrochelatase Crystallized With Am 4e-54
2hre_A359 Structure Of Human Ferrochelatase Variant E343k Wit 1e-53
3aqi_A359 H240a Variant Of Human Ferrochelatase Length = 359 3e-53
1hrk_A359 Crystal Structure Of Human Ferrochelatase Length = 4e-53
2qd2_A359 F110a Variant Of Human Ferrochelatase With Protohem 4e-53
4f4d_A359 F337r Variant Of Human Ferrochelatase Length = 359 5e-53
2po7_A359 Crystal Structure Of Human Ferrochelatase Mutant Wi 2e-52
2pnj_A359 Crystal Structure Of Human Ferrochelatase Mutant Wi 4e-52
2po5_A359 Crystal Structure Of Human Ferrochelatase Mutant Wi 6e-52
1l8x_A362 Crystal Structure Of Ferrochelatase From The Yeast, 3e-44
2ac2_A309 Crystal Structure Of The Tyr13phe Mutant Variant Of 6e-26
3goq_A310 Crystal Structure Of The Tyr13met Variant Of Bacill 7e-26
1c1h_A310 Crystal Structure Of Bacillus Subtilis Ferrochelata 7e-26
1c9e_A306 Structure Of Ferrochelatase With Copper(Ii) N- Meth 7e-26
1doz_A309 Crystal Structure Of Ferrochelatase Length = 309 8e-26
2h1v_A310 Crystal Structure Of The Lys87ala Mutant Variant Of 2e-25
2q3j_A309 Crystal Structure Of The His183ala Variant Of Bacil 1e-24
2h1w_A310 Crystal Structure Of The His183ala Mutant Variant O 1e-24
2ac4_A309 Crystal Structure Of The His183cys Mutant Variant O 1e-24
2c8j_A311 Crystal Structure Of Ferrochelatase Hemh-1 From Bac 2e-21
>pdb|2QD3|A Chain A, Wild Type Human Ferrochelatase Crystallized With Ammonium Sulfate Length = 359 Back     alignment and structure 
Iteration: 1

 Score =  208 bits (530), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 121/287 (42%), Positives = 167/287 (58%), Gaps = 10/287 (3%)
Query: 41  LQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQAEELRKSLWE---KNLPAKVYVG 97
           +Q  LA FI+  R PK +E Y  IGGGSP++  T  Q E + K L E      P K Y+G
Sbjct: 39  IQNKLAPFIAKRRTPKIQEQYRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIG 98
Query: 98  MRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHT 157
            RY HP TEEAIE+++RDG+ + +    YPQ+S ST+GSSL  +   + +      M+ +
Sbjct: 99  FRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWS 158
Query: 158 VIPSWYQREGYITAMANLIEKELQNF--DSPEQVMIFFSAHGVPLAYVEEAGDPYKAEME 215
            I  W      I   A+ I KEL +F  +   +V+I FSAH +P++ V   GDPY  E+ 
Sbjct: 159 TIDRWPTHHLLIQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNR-GDPYPQEVS 217
Query: 216 ECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFV 275
             V  +ME LE     N Y L +QS+VGP+ WL P TDE+I  L ++G K++L VPI+F 
Sbjct: 218 ATVQKVMERLE---YCNPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFT 274
Query: 276 SEHIETLEEIDVEYKE-LALKSGIEKWGRVPALGCEATFISDLADAV 321
           S+HIETL E+D+EY + LA + G+E   R  +L     F   LAD V
Sbjct: 275 SDHIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLV 321
>pdb|2HRE|A Chain A, Structure Of Human Ferrochelatase Variant E343k With Protoporphyrin Ix Bound Length = 359 Back     alignment and structure
>pdb|3AQI|A Chain A, H240a Variant Of Human Ferrochelatase Length = 359 Back     alignment and structure
>pdb|1HRK|A Chain A, Crystal Structure Of Human Ferrochelatase Length = 359 Back     alignment and structure
>pdb|2QD2|A Chain A, F110a Variant Of Human Ferrochelatase With Protoheme Bound Length = 359 Back     alignment and structure
>pdb|4F4D|A Chain A, F337r Variant Of Human Ferrochelatase Length = 359 Back     alignment and structure
>pdb|2PO7|A Chain A, Crystal Structure Of Human Ferrochelatase Mutant With His 341 Replaced By Cys Length = 359 Back     alignment and structure
>pdb|2PNJ|A Chain A, Crystal Structure Of Human Ferrochelatase Mutant With Phe 337 Replaced By Ala Length = 359 Back     alignment and structure
>pdb|2PO5|A Chain A, Crystal Structure Of Human Ferrochelatase Mutant With His 263 Replaced By Cys Length = 359 Back     alignment and structure
>pdb|1L8X|A Chain A, Crystal Structure Of Ferrochelatase From The Yeast, Saccharomyces Cerevisiae, With Cobalt(Ii) As The Substrate Ion Length = 362 Back     alignment and structure
>pdb|2AC2|A Chain A, Crystal Structure Of The Tyr13phe Mutant Variant Of Bacillus Subtilis Ferrochelatase With Zn(2+) Bound At The Active Site Length = 309 Back     alignment and structure
>pdb|3GOQ|A Chain A, Crystal Structure Of The Tyr13met Variant Of Bacillus Subtilis Ferrochelatase Length = 310 Back     alignment and structure
>pdb|1C1H|A Chain A, Crystal Structure Of Bacillus Subtilis Ferrochelatase In Complex With N-Methyl Mesoporphyrin Length = 310 Back     alignment and structure
>pdb|1C9E|A Chain A, Structure Of Ferrochelatase With Copper(Ii) N- Methylmesoporphyrin Complex Bound At The Active Site Length = 306 Back     alignment and structure
>pdb|1DOZ|A Chain A, Crystal Structure Of Ferrochelatase Length = 309 Back     alignment and structure
>pdb|2H1V|A Chain A, Crystal Structure Of The Lys87ala Mutant Variant Of Bacillus Subtilis Ferrochelatase Length = 310 Back     alignment and structure
>pdb|2Q3J|A Chain A, Crystal Structure Of The His183ala Variant Of Bacillus Subtilis Ferrochelatase In Complex With N-Methyl Mesoporphyrin Length = 309 Back     alignment and structure
>pdb|2H1W|A Chain A, Crystal Structure Of The His183ala Mutant Variant Of Bacillus Subtilis Ferrochelatase Length = 310 Back     alignment and structure
>pdb|2AC4|A Chain A, Crystal Structure Of The His183cys Mutant Variant Of Bacillus Subtilis Ferrochelatase Length = 309 Back     alignment and structure
>pdb|2C8J|A Chain A, Crystal Structure Of Ferrochelatase Hemh-1 From Bacillus Anthracis, Str. Ames Length = 311 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query414
1lbq_A362 Ferrochelatase; rossmann fold, PI-helix, lyase; 2. 1e-142
3hcn_A359 Ferrochelatase, mitochondrial; metal selectivity, 1e-141
2h1v_A310 Ferrochelatase; rossman fold, PI-helix, lyase; 1.2 1e-124
2xvy_A269 Chelatase, putative; metal binding protein; HET: H 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>1lbq_A Ferrochelatase; rossmann fold, PI-helix, lyase; 2.40A {Saccharomyces cerevisiae} SCOP: c.92.1.1 PDB: 1l8x_A Length = 362 Back     alignment and structure
 Score =  408 bits (1051), Expect = e-142
 Identities = 114/301 (37%), Positives = 162/301 (53%), Gaps = 15/301 (4%)

Query: 30  DIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQAEELRKSL---W 86
           D+I +   +   QK +A++I+  R PK ++ Y  IGGGSP+R+ ++ QA E+ K L    
Sbjct: 36  DLIPISAKY---QKTIAKYIAKFRTPKIEKQYREIGGGSPIRKWSEYQATEVCKILDKTC 92

Query: 87  EKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFR 146
            +  P K YV  RY  P T E  +Q+ +DG+ K V    YP FS ST+GSS+  L    +
Sbjct: 93  PETAPHKPYVAFRYAKPLTAETYKQMLKDGVKKAVAFSQYPHFSYSTTGSSINELWRQIK 152

Query: 147 EDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNFDSPEQ--VMIFFSAHGVPLAYVE 204
             +   ++  +VI  W   EG I A +  I K+LQ F  P +  V++ FSAH +P+  V 
Sbjct: 153 ALDSERSISWSVIDRWPTNEGLIKAFSENITKKLQEFPQPVRDKVVLLFSAHSLPMDVVN 212

Query: 205 EAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGV 264
             GD Y AE+   V  IM++L   K  N Y L +QS+VGP  WL   T E    LG   V
Sbjct: 213 T-GDAYPAEVAATVYNIMQKL---KFKNPYRLVWQSQVGPKPWLGAQTAEIAEFLG-PKV 267

Query: 265 KSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAVIES 324
             L+ +PI+F S+HIETL EID+     +     +K+ R  +L    TFI  +AD V   
Sbjct: 268 DGLMFIPIAFTSDHIETLHEIDLGVIGES--EYKDKFKRCESLNGNQTFIEGMADLVKSH 325

Query: 325 L 325
           L
Sbjct: 326 L 326
>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, disease mutation, heme biosynthesis, iron, iron-sulfur, lyase, membrane, metal-BIN mitochondrion; HET: CHD HEM GOL; 1.60A {Homo sapiens} PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A* 2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 3aqi_A* 2pnj_A* 2po5_A* 2po7_A* Length = 359 Back     alignment and structure
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A 3goq_A 1doz_A 2q2n_A* 3m4z_A 2h1w_A 2ac2_A 2q3j_A* 2ac4_A 2q2o_A* 1c9e_A* 2c8j_A Length = 310 Back     alignment and structure
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A* Length = 269 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query414
3hcn_A359 Ferrochelatase, mitochondrial; metal selectivity, 100.0
1lbq_A362 Ferrochelatase; rossmann fold, PI-helix, lyase; 2. 100.0
2h1v_A310 Ferrochelatase; rossman fold, PI-helix, lyase; 1.2 100.0
2xvy_A269 Chelatase, putative; metal binding protein; HET: H 100.0
2jh3_A 474 Ribosomal protein S2-related protein; CBIX, SAD ph 99.97
2xwp_A264 Sirohydrochlorin cobaltochelatase; lyase, beta-alp 99.94
3lyh_A126 Cobalamin (vitamin B12) biosynthesis CBIX protein; 99.13
2xws_A133 Sirohydrochlorin cobaltochelatase; lyase, beta-alp 99.08
1tjn_A156 Sirohydrochlorin cobaltochelatase; AF0721, APC5049 99.08
3lyh_A126 Cobalamin (vitamin B12) biosynthesis CBIX protein; 98.91
2xws_A133 Sirohydrochlorin cobaltochelatase; lyase, beta-alp 98.74
1tjn_A156 Sirohydrochlorin cobaltochelatase; AF0721, APC5049 98.49
2xwp_A264 Sirohydrochlorin cobaltochelatase; lyase, beta-alp 98.38
2xvy_A269 Chelatase, putative; metal binding protein; HET: H 98.35
2h1v_A310 Ferrochelatase; rossman fold, PI-helix, lyase; 1.2 98.03
2jh3_A 474 Ribosomal protein S2-related protein; CBIX, SAD ph 97.75
2bhw_A232 Chlorophyll A-B binding protein AB80; LHC-II, phot 97.73
1lbq_A362 Ferrochelatase; rossmann fold, PI-helix, lyase; 2. 97.73
3pl9_A243 Chlorophyll A-B binding protein; CP29, light-harve 97.63
3hcn_A359 Ferrochelatase, mitochondrial; metal selectivity, 97.47
2wsc_2269 LHCA2, type II chlorophyll A/B binding protein fro 97.47
2wsc_3276 LHCA3, type II chlorophyll A/B binding protein fro 97.34
2wsc_1241 AT3G54890, LHCA1; photosynthesis, electron transfe 97.05
2wsc_4 251 Chlorophyll A-B binding protein P4, chloroplastic; 96.83
3pl9_A 243 Chlorophyll A-B binding protein; CP29, light-harve 96.49
2wsc_3 276 LHCA3, type II chlorophyll A/B binding protein fro 96.07
2wsc_4251 Chlorophyll A-B binding protein P4, chloroplastic; 95.82
2wsc_2 269 LHCA2, type II chlorophyll A/B binding protein fro 95.56
2bhw_A 232 Chlorophyll A-B binding protein AB80; LHC-II, phot 94.46
2wsc_1 241 AT3G54890, LHCA1; photosynthesis, electron transfe 80.19
>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, disease mutation, heme biosynthesis, iron, iron-sulfur, lyase, membrane, metal-BIN mitochondrion; HET: CHD HEM GOL; 1.60A {Homo sapiens} SCOP: c.92.1.1 PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A* 2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 4f4d_A* 3aqi_A* 2pnj_A* 2po5_A* 2po7_A* Back     alignment and structure
Probab=100.00  E-value=2.8e-93  Score=717.18  Aligned_cols=329  Identities=39%  Similarity=0.618  Sum_probs=303.1

Q ss_pred             ceEEEEeccccCCcchHHHHHHhhcCCCCcccCCcchhhhHHHHHHHhcCCCchhHHHHHhccCCCCCchHHHHHHHHHH
Q 015024            2 SAFFLFYFVYISASSSLHLRFSQLQVPTDIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQAEEL   81 (414)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~fL~~flsD~rVi~lp~~~~~~~~~L~~~I~~~R~~k~~~~Y~~IgggSPL~~~T~~qa~~L   81 (414)
                      .|+||.|||||++.++|.+||+|||+|||||++|.     |++|+++|+++|++|++++|++|||||||+.+|++|+++|
T Consensus         5 ~gVLL~nlG~P~~~~~V~~fL~~~~~d~~Vi~~P~-----~~~L~~~I~~~R~~k~~~~Y~~igggSPL~~~t~~Q~~~L   79 (359)
T 3hcn_A            5 TGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLPI-----QNKLAPFIAKRRTPKIQEQYRRIGGGSPIKIWTSKQGEGM   79 (359)
T ss_dssp             EEEEEEECCCCSSGGGHHHHHHHHHTCTTTCCCTT-----HHHHHHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCCHHHHHHHHHHHccCCcccccch-----HHHHhHHhcccchHHHHHHHHHcCCCCcHHHHHHHHHHHH
Confidence            58999999999999999999999999999999982     6799999999999999999999999999999999999999


Q ss_pred             HHHhhccC---CCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHHHHHhccccCCcceEE
Q 015024           82 RKSLWEKN---LPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTV  158 (414)
Q Consensus        82 ~~~L~~~~---~~~~V~~amry~~P~i~e~l~~l~~~G~~~IivlPLyPqyS~~Ttgs~~~~~~e~~~~~~~~~~~~~~~  158 (414)
                      ++.|++.+   .+++|++|||||+|++++++++|+++|+++|+++|||||||++||||+++++.+.+++....+.+++++
T Consensus        80 ~~~L~~~~~~~~~~~V~~amry~~P~i~~~l~~l~~~G~~~ivvlPlyPqyS~~Ttgs~~~~~~~~~~~~~~~~~~~~~~  159 (359)
T 3hcn_A           80 VKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWST  159 (359)
T ss_dssp             HHHHHHHCGGGCSEEEEEEESSSSSBHHHHHHHHHHTTCSEEEEEESCSSCCTTTHHHHHHHHHHHHHHTTCCCSSEEEE
T ss_pred             HHHHhhhcccccCceEEEEEeeCCCCHHHHHHHHHhcCCCeEEEEECCccccccchhhHHHHHHHHHHHhccCCCCceEE
Confidence            99997643   358999999999999999999999999999999999999999999999999998887655556778999


Q ss_pred             eCCCCCChHHHHHHHHHHHHHHHhCCCC--CceEEEEeecCChhhhhcccCCchHHHHHHHHHHHHHHhccccCCCCEEE
Q 015024          159 IPSWYQREGYITAMANLIEKELQNFDSP--EQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTL  236 (414)
Q Consensus       159 i~~~~~~p~yI~a~a~~I~~~l~~~~~~--~~~~LlfSaHgiP~~~i~~~GDpY~~~~~~t~~~l~e~l~~~~~~~~~~l  236 (414)
                      |++||+||.||+|++++|++++++++.+  ++++|||||||+|++++ ++||||++||++|+++|+++||+.   ++|.+
T Consensus       160 i~~~~~~p~yI~a~a~~I~~~l~~~~~~~~~~~~LlfSaHgiP~~~~-~~GDpY~~q~~~t~~lv~e~Lg~~---~~~~l  235 (359)
T 3hcn_A          160 IDRWPTHHLLIQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVV-NRGDPYPQEVSATVQKVMERLEYC---NPYRL  235 (359)
T ss_dssp             ECCCTTCHHHHHHHHHHHHHHHTTSCTTTGGGCEEEEEEECCBHHHH-TTTCSHHHHHHHHHHHHHHHTTTC---SCEEE
T ss_pred             eCCccCCHHHHHHHHHHHHHHHHhCCccccCCcEEEEEcCCChHhhc-ccCCCHHHHHHHHHHHHHHHcCCC---CCEEE
Confidence            9999999999999999999999887532  45689999999999999 799999999999999999999874   35999


Q ss_pred             EEecCcCCCCCCCCcHHHHHHHHhhcCCceEEEEcccccccchhhHHHHHHHH-HHHHHhcCCeeEEEcCCCCCCHHHHH
Q 015024          237 AYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEY-KELALKSGIEKWGRVPALGCEATFIS  315 (414)
Q Consensus       237 afQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvP~gFvsD~lETl~Eid~e~-~e~a~~~G~~~~~~vp~lNd~p~fi~  315 (414)
                      +||||+|+.+||+|+|+|+|++|+++|+|+|+|+||||++||+|||||||+|+ ++.|.++|+++|.|+|||||||.||+
T Consensus       236 ~~QSr~G~~~WL~P~t~d~l~~L~~~G~k~vvv~P~gFvsD~lETL~Eid~E~~~e~a~e~G~~~~~rip~LNd~p~fi~  315 (359)
T 3hcn_A          236 VWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDHIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSK  315 (359)
T ss_dssp             EEECCSCSSCBSSSBHHHHHHHHHHTTCCEEEEECTTCCSCCCCCHHHHCHHHHHHHHHHTCCCEEEECCCSTTCHHHHH
T ss_pred             EEEcCCCCCCCCCCCHHHHHHHHHHcCCCeEEEECCccchhhHHhHHHHHHHHHHHHHHhCCCceEEEcCCCCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999 58999999988999999999999999


Q ss_pred             HHHHHHHHhCCCCCcccccchhhhh
Q 015024          316 DLADAVIESLPYVGAMAVSNLEARQ  340 (414)
Q Consensus       316 ~La~lV~~~l~~~~~~~~~~~~~~~  340 (414)
                      +|+++|.+++++-. ..+.+...+|
T Consensus       316 ~La~lv~~~l~~~~-~~~~~~~~~c  339 (359)
T 3hcn_A          316 ALADLVHSHIQSNE-LCSKQLTLSC  339 (359)
T ss_dssp             HHHHHHHHHHHHTC-SSCGGGGSCC
T ss_pred             HHHHHHHHHHhcCC-ccCcccCCCC
Confidence            99999999887532 2334454554
>1lbq_A Ferrochelatase; rossmann fold, PI-helix, lyase; 2.40A {Saccharomyces cerevisiae} SCOP: c.92.1.1 PDB: 1l8x_A Back     alignment and structure
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A 3goq_A 1doz_A 2q2n_A* 3m4z_A 2h1w_A 2ac2_A 2q3j_A* 2ac4_A 2q2o_A* 1c9e_A* 2c8j_A Back     alignment and structure
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A* Back     alignment and structure
>2jh3_A Ribosomal protein S2-related protein; CBIX, SAD phasing, structural genomics, chelatase super-family fold, 4Fe-4S iron-sulphur cluster; 1.9A {Deinococcus radiodurans} Back     alignment and structure
>2xwp_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; HET: SIR; 1.90A {Salmonella enterica} PDB: 1qgo_A* Back     alignment and structure
>3lyh_A Cobalamin (vitamin B12) biosynthesis CBIX protein; structural genomics, joint center for structural genomics, protein structure initiative; HET: MSE; 1.60A {Marinobacter aquaeolei} Back     alignment and structure
>2xws_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; 1.60A {Archaeoglobus fulgidus} PDB: 2dj5_A* 2xwq_A Back     alignment and structure
>1tjn_A Sirohydrochlorin cobaltochelatase; AF0721, APC5049, midwest consortium for structural genomics, structure initiative, A. fulgidus; 2.01A {Archaeoglobus fulgidus} SCOP: c.92.1.3 Back     alignment and structure
>3lyh_A Cobalamin (vitamin B12) biosynthesis CBIX protein; structural genomics, joint center for structural genomics, protein structure initiative; HET: MSE; 1.60A {Marinobacter aquaeolei} Back     alignment and structure
>2xws_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; 1.60A {Archaeoglobus fulgidus} PDB: 2dj5_A* 2xwq_A Back     alignment and structure
>1tjn_A Sirohydrochlorin cobaltochelatase; AF0721, APC5049, midwest consortium for structural genomics, structure initiative, A. fulgidus; 2.01A {Archaeoglobus fulgidus} SCOP: c.92.1.3 Back     alignment and structure
>2xwp_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; HET: SIR; 1.90A {Salmonella enterica} PDB: 1qgo_A* Back     alignment and structure
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A* Back     alignment and structure
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A 3goq_A 1doz_A 2q2n_A* 3m4z_A 2h1w_A 2ac2_A 2q3j_A* 2ac4_A 2q2o_A* 1c9e_A* 2c8j_A Back     alignment and structure
>2jh3_A Ribosomal protein S2-related protein; CBIX, SAD phasing, structural genomics, chelatase super-family fold, 4Fe-4S iron-sulphur cluster; 1.9A {Deinococcus radiodurans} Back     alignment and structure
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* Back     alignment and structure
>1lbq_A Ferrochelatase; rossmann fold, PI-helix, lyase; 2.40A {Saccharomyces cerevisiae} SCOP: c.92.1.1 PDB: 1l8x_A Back     alignment and structure
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea} Back     alignment and structure
>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, disease mutation, heme biosynthesis, iron, iron-sulfur, lyase, membrane, metal-BIN mitochondrion; HET: CHD HEM GOL; 1.60A {Homo sapiens} SCOP: c.92.1.1 PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A* 2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 4f4d_A* 3aqi_A* 2pnj_A* 2po5_A* 2po7_A* Back     alignment and structure
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Back     alignment and structure
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3* Back     alignment and structure
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1* Back     alignment and structure
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4* Back     alignment and structure
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea} Back     alignment and structure
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3* Back     alignment and structure
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4* Back     alignment and structure
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Back     alignment and structure
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* Back     alignment and structure
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 414
d2hrca1359 c.92.1.1 (A:65-423) Ferrochelatase {Human (Homo sa 8e-66
d1lbqa_356 c.92.1.1 (A:) Ferrochelatase {Baker's yeast (Sacch 2e-62
d2hk6a1309 c.92.1.1 (A:2-310) Ferrochelatase {Bacillus subtil 3e-58
d1qgoa_257 c.92.1.2 (A:) Cobalt chelatase CbiK {Salmonella ty 2e-10
>d2hrca1 c.92.1.1 (A:65-423) Ferrochelatase {Human (Homo sapiens) [TaxId: 9606]} Length = 359 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Chelatase-like
superfamily: Chelatase
family: Ferrochelatase
domain: Ferrochelatase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  212 bits (539), Expect = 8e-66
 Identities = 121/302 (40%), Positives = 173/302 (57%), Gaps = 15/302 (4%)

Query: 30  DIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQAEELRKSLWEKN 89
           D++ LP     +Q  LA FI+    PK +E Y  IGGGSP++  T  Q E + K L E +
Sbjct: 33  DLMTLP-----IQNKLAPFIAKRLTPKIQEQYRRIGGGSPIKIWTSKQGEGMVKLLDELS 87

Query: 90  ---LPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFR 146
               P K Y+G RY HP TEEAIE+++RDG+ + +    YPQ+S ST+GSSL  +   + 
Sbjct: 88  PNTAPHKYYIGFRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYN 147

Query: 147 EDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNF--DSPEQVMIFFSAHGVPLAYVE 204
           +      M+ + I  W      I   A+ I KEL +F  +   +V+I FSAH +P++ V 
Sbjct: 148 QVGRKPTMKWSTIDRWPTHHLLIQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVN 207

Query: 205 EAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGV 264
             GDPY  E+   V  +ME   + +  N Y L +QS+VGP+ WL P TDE+I  L ++G 
Sbjct: 208 R-GDPYPQEVSATVQKVME---RLEYCNPYRLVWQSKVGPMPWLGPQTDESIKGLCERGR 263

Query: 265 KSLLAVPISFVSEHIETLEEIDVEYKE-LALKSGIEKWGRVPALGCEATFISDLADAVIE 323
           K++L VPI+F S+HIETL E+D+EY + LA + G+E   R  +L     F   LAD V  
Sbjct: 264 KNILLVPIAFTSDHIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLVHS 323

Query: 324 SL 325
            +
Sbjct: 324 HI 325
>d1lbqa_ c.92.1.1 (A:) Ferrochelatase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 356 Back     information, alignment and structure
>d2hk6a1 c.92.1.1 (A:2-310) Ferrochelatase {Bacillus subtilis [TaxId: 1423]} Length = 309 Back     information, alignment and structure
>d1qgoa_ c.92.1.2 (A:) Cobalt chelatase CbiK {Salmonella typhimurium [TaxId: 90371]} Length = 257 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query414
d1lbqa_356 Ferrochelatase {Baker's yeast (Saccharomyces cerev 100.0
d2hrca1359 Ferrochelatase {Human (Homo sapiens) [TaxId: 9606] 100.0
d2hk6a1309 Ferrochelatase {Bacillus subtilis [TaxId: 1423]} 100.0
d1qgoa_257 Cobalt chelatase CbiK {Salmonella typhimurium [Tax 99.89
d1tjna_125 Sirohydrochlorin cobaltochelatase CbiX {Archaeon A 98.49
d1tjna_125 Sirohydrochlorin cobaltochelatase CbiX {Archaeon A 98.16
d1qgoa_257 Cobalt chelatase CbiK {Salmonella typhimurium [Tax 97.97
d2hk6a1309 Ferrochelatase {Bacillus subtilis [TaxId: 1423]} 97.79
d2hrca1359 Ferrochelatase {Human (Homo sapiens) [TaxId: 9606] 97.69
d1rwta_218 Chlorophyll a-b binding protein {Spinach (Spinacia 97.61
d1lbqa_356 Ferrochelatase {Baker's yeast (Saccharomyces cerev 97.48
d1rwta_ 218 Chlorophyll a-b binding protein {Spinach (Spinacia 94.48
>d1lbqa_ c.92.1.1 (A:) Ferrochelatase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Chelatase-like
superfamily: Chelatase
family: Ferrochelatase
domain: Ferrochelatase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.5e-90  Score=693.26  Aligned_cols=331  Identities=36%  Similarity=0.543  Sum_probs=299.5

Q ss_pred             ceEEEEeccccCCcchHHHHHHhhcCCCCcccCCcchhhhHHHHHHHhcCCCchhHHHHHhccCCCCCchHHHHHHHHHH
Q 015024            2 SAFFLFYFVYISASSSLHLRFSQLQVPTDIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRRITDAQAEEL   81 (414)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~fL~~flsD~rVi~lp~~~~~~~~~L~~~I~~~R~~k~~~~Y~~IgggSPL~~~T~~qa~~L   81 (414)
                      +||||.|+|+|.+.++|++||++||+|||||++|+++   |++|+++|+++|++|++++|++|||||||+.+|++|+++|
T Consensus         4 tgVLL~nlGtP~s~~~V~~yL~~fl~D~~vi~~p~~~---~~~l~~~I~~~R~~k~a~~Y~~IgggSPL~~~t~~qa~~l   80 (356)
T d1lbqa_           4 TGIVLMNMGGPSKVEETYDFLYQLFADNDLIPISAKY---QKTIAKYIAKFRTPKIEKQYREIGGGSPIRKWSEYQATEV   80 (356)
T ss_dssp             EEEEEEECCCCSSGGGHHHHHHHHTTCCSSSCCCSSS---HHHHHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHH
T ss_pred             eEEEEEECCCCCChHHHHHHHHHHcCCCccccCCHHH---HHHHhhhcCccCCHHHHHHHHHcCCCChhHHHHHHHHHHH
Confidence            5899999999999999999999999999999999754   5678889999999999999999999999999999999999


Q ss_pred             HHHhhcc---CCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEEecCCcccccchHHHHHHHHHHHHhccccCCcceEE
Q 015024           82 RKSLWEK---NLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTV  158 (414)
Q Consensus        82 ~~~L~~~---~~~~~V~~amry~~P~i~e~l~~l~~~G~~~IivlPLyPqyS~~Ttgs~~~~~~e~~~~~~~~~~~~~~~  158 (414)
                      ++.|++.   +.++.|++|||||+|+|+++|++|+++||++|+++|||||||.+||||+++++.+.+++....+.+.+++
T Consensus        81 ~~~L~~~~~~~~~~~V~~amry~~P~i~~~l~~l~~~G~~~ilvlPlyPqyS~sTt~s~~~~v~~~l~~~~~~~~~~~~~  160 (356)
T d1lbqa_          81 CKILDKTCPETAPHKPYVAFRYAKPLTAETYKQMLKDGVKKAVAFSQYPHFSYSTTGSSINELWRQIKALDSERSISWSV  160 (356)
T ss_dssp             HHHHHHHCGGGCCEEEEEEESSSSSCHHHHHHHHHTTTCCEEEEEESCSSCCTTTHHHHHHHHHHHHHHHCTTCCSEEEE
T ss_pred             HHHhhccccccCCceeEEEeccccccHHHHHHHHHhCCCcceEEEecchhhhHHHHHHHHHHHHHHHHHhhhhcccccee
Confidence            9999764   3468999999999999999999999999999999999999999999999999998887655556778999


Q ss_pred             eCCCCCChHHHHHHHHHHHHHHHhCCCC--CceEEEEeecCChhhhhcccCCchHHHHHHHHHHHHHHhccccCCCCEEE
Q 015024          159 IPSWYQREGYITAMANLIEKELQNFDSP--EQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTL  236 (414)
Q Consensus       159 i~~~~~~p~yI~a~a~~I~~~l~~~~~~--~~~~LlfSaHgiP~~~i~~~GDpY~~~~~~t~~~l~e~l~~~~~~~~~~l  236 (414)
                      |++||+||.||+|++++|+++++..+.+  ++++|||||||||++++ ++||||..||.+|+++++++++..   ++|.+
T Consensus       161 I~~~~~~p~yI~a~a~~i~~~l~~~~~~~~~~~~LlfS~HgiP~~~~-~~gdpY~~q~~~t~~~v~~~l~~~---~~~~~  236 (356)
T d1lbqa_         161 IDRWPTNEGLIKAFSENITKKLQEFPQPVRDKVVLLFSAHSLPMDVV-NTGDAYPAEVAATVYNIMQKLKFK---NPYRL  236 (356)
T ss_dssp             ECCCTTCHHHHHHHHHHHHHHHHTSCSTTGGGCEEEEEEECCBHHHH-TTTCSHHHHHHHHHHHHHHHTTTC---SCEEE
T ss_pred             ecccccchhHHHHHHHHHHHHHHHcCcccccCcEEEEecCCcccchh-hcCCCchHHHHHHHHHHhhhcccc---cceEE
Confidence            9999999999999999999999987643  45789999999999999 899999999999999999999864   46999


Q ss_pred             EEecCcCCCCCCCCcHHHHHHHHhhcCCceEEEEcccccccchhhHHHHHHHHHHHHHhcCCeeEEEcCCCCCCHHHHHH
Q 015024          237 AYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISD  316 (414)
Q Consensus       237 afQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvP~gFvsD~lETl~Eid~e~~e~a~~~G~~~~~~vp~lNd~p~fi~~  316 (414)
                      +||||+|+.+||+|+|+|+++.+++ |+|+|+|+||||++||+|||||||+|+++.  +.|+.+|.|+||||+||.||++
T Consensus       237 ~fQSr~g~~~WL~P~t~~~le~l~~-g~k~v~v~p~gFvsD~lETL~Eidie~~~~--~~gg~~f~~vp~lN~~p~fi~~  313 (356)
T d1lbqa_         237 VWQSQVGPKPWLGAQTAEIAEFLGP-KVDGLMFIPIAFTSDHIETLHEIDLGVIGE--SEYKDKFKRCESLNGNQTFIEG  313 (356)
T ss_dssp             EEECCCSSSCBCSCBHHHHHHHHGG-GCSCEEEECTTCSSCCHHHHTCCCCCCCTT--CTTGGGEEECCCCTTCHHHHHH
T ss_pred             EeeccccCCCCCCCchHHHHHHhcc-CCCeEEEECCcccccchhhHHHHHHHHHHH--HhCCCeEEEcCCCCCCHHHHHH
Confidence            9999999999999999999988864 999999999999999999999999998764  5678889999999999999999


Q ss_pred             HHHHHHHhCCCCCcccccchhhhhccc
Q 015024          317 LADAVIESLPYVGAMAVSNLEARQSLV  343 (414)
Q Consensus       317 La~lV~~~l~~~~~~~~~~~~~~~~~~  343 (414)
                      |+++|++++++....+ .++-.+++++
T Consensus       314 La~lV~~~l~~~~~~s-~~~~~~~~~~  339 (356)
T d1lbqa_         314 MADLVKSHLQSNQLYS-NQLPLDFALG  339 (356)
T ss_dssp             HHHHHHHHHHHCCSSC-TTHHHHHHHC
T ss_pred             HHHHHHHHhccCcccC-cccccccccC
Confidence            9999999998754333 3444444433
>d2hrca1 c.92.1.1 (A:65-423) Ferrochelatase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hk6a1 c.92.1.1 (A:2-310) Ferrochelatase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1qgoa_ c.92.1.2 (A:) Cobalt chelatase CbiK {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1tjna_ c.92.1.3 (A:) Sirohydrochlorin cobaltochelatase CbiX {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1tjna_ c.92.1.3 (A:) Sirohydrochlorin cobaltochelatase CbiX {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1qgoa_ c.92.1.2 (A:) Cobalt chelatase CbiK {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2hk6a1 c.92.1.1 (A:2-310) Ferrochelatase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2hrca1 c.92.1.1 (A:65-423) Ferrochelatase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure
>d1lbqa_ c.92.1.1 (A:) Ferrochelatase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure